Query 018938
Match_columns 348
No_of_seqs 489 out of 2749
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 08:23:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018938.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018938hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 9.6E-54 3.3E-58 409.5 26.0 229 28-269 22-259 (366)
2 3gfo_A Cobalt import ATP-bindi 100.0 8.1E-54 2.8E-58 397.6 24.6 221 28-265 5-235 (275)
3 4g1u_C Hemin import ATP-bindin 100.0 3E-53 1E-57 392.3 26.3 216 28-263 9-237 (266)
4 3fvq_A Fe(3+) IONS import ATP- 100.0 5.3E-53 1.8E-57 404.1 26.9 219 30-266 4-231 (359)
5 3rlf_A Maltose/maltodextrin im 100.0 1.4E-52 4.7E-57 403.8 26.0 216 30-267 3-227 (381)
6 2olj_A Amino acid ABC transpor 100.0 2.4E-52 8.2E-57 385.4 26.5 218 29-265 23-250 (263)
7 1g6h_A High-affinity branched- 100.0 1.5E-52 5.1E-57 386.1 24.7 213 28-260 5-239 (257)
8 3tif_A Uncharacterized ABC tra 100.0 2.1E-52 7E-57 380.2 22.4 220 30-262 1-233 (235)
9 1b0u_A Histidine permease; ABC 100.0 8.6E-52 2.9E-56 381.9 26.1 227 29-265 5-244 (262)
10 2yyz_A Sugar ABC transporter, 100.0 1.5E-51 5.1E-56 394.9 26.6 215 30-266 3-226 (359)
11 1ji0_A ABC transporter; ATP bi 100.0 1.4E-51 4.7E-56 375.9 24.7 216 28-263 4-228 (240)
12 1z47_A CYSA, putative ABC-tran 100.0 1.7E-51 5.9E-56 393.6 26.0 219 27-266 11-238 (355)
13 1vpl_A ABC transporter, ATP-bi 100.0 1.7E-51 5.7E-56 378.5 24.8 213 29-263 14-235 (256)
14 2pcj_A ABC transporter, lipopr 100.0 8.3E-52 2.8E-56 373.6 21.8 210 29-257 3-222 (224)
15 2it1_A 362AA long hypothetical 100.0 4E-51 1.4E-55 392.3 26.7 215 30-266 3-226 (362)
16 1oxx_K GLCV, glucose, ABC tran 100.0 1.4E-51 4.9E-56 394.8 23.4 220 30-266 3-233 (353)
17 3d31_A Sulfate/molybdate ABC t 100.0 3.9E-51 1.3E-55 390.7 25.8 214 30-266 1-220 (348)
18 1v43_A Sugar-binding transport 100.0 3.9E-51 1.3E-55 393.7 25.5 215 30-266 11-234 (372)
19 2onk_A Molybdate/tungstate ABC 100.0 5.8E-51 2E-55 371.5 24.7 211 30-265 1-218 (240)
20 1g29_1 MALK, maltose transport 100.0 8E-51 2.8E-55 392.0 26.1 221 30-266 3-232 (372)
21 2yz2_A Putative ABC transporte 100.0 4.3E-50 1.5E-54 371.4 25.6 213 30-264 2-228 (266)
22 2ihy_A ABC transporter, ATP-bi 100.0 7.1E-51 2.4E-55 378.8 20.2 217 28-263 19-252 (279)
23 2ff7_A Alpha-hemolysin translo 100.0 1E-49 3.4E-54 365.0 26.0 213 30-264 7-233 (247)
24 2ixe_A Antigen peptide transpo 100.0 8.3E-50 2.8E-54 370.3 23.5 217 29-264 15-246 (271)
25 3nh6_A ATP-binding cassette SU 100.0 1.7E-49 5.8E-54 373.3 23.9 214 29-264 52-278 (306)
26 2nq2_C Hypothetical ABC transp 100.0 1.8E-49 6E-54 364.6 22.0 201 30-263 4-217 (253)
27 1mv5_A LMRA, multidrug resista 100.0 1.6E-49 5.5E-54 362.9 20.8 211 30-263 1-226 (243)
28 2d2e_A SUFC protein; ABC-ATPas 100.0 3.7E-49 1.2E-53 362.0 22.6 210 30-259 3-229 (250)
29 2zu0_C Probable ATP-dependent 100.0 7.6E-49 2.6E-53 363.1 23.9 214 28-262 18-253 (267)
30 2qi9_C Vitamin B12 import ATP- 100.0 6.8E-49 2.3E-53 359.7 23.3 208 30-263 4-222 (249)
31 2ghi_A Transport protein; mult 100.0 3.3E-48 1.1E-52 357.6 24.5 214 29-264 16-243 (260)
32 2pjz_A Hypothetical protein ST 100.0 2.1E-48 7.3E-53 359.0 22.1 207 30-263 1-215 (263)
33 3gd7_A Fusion complex of cysti 100.0 6.5E-48 2.2E-52 373.4 21.7 216 29-267 18-246 (390)
34 2cbz_A Multidrug resistance-as 100.0 9.7E-48 3.3E-52 349.8 20.3 199 30-264 3-218 (237)
35 2pze_A Cystic fibrosis transme 100.0 2.5E-47 8.7E-52 345.4 22.6 199 29-263 5-218 (229)
36 1sgw_A Putative ABC transporte 100.0 6E-48 2E-52 345.7 17.3 196 29-252 9-210 (214)
37 3qf4_A ABC transporter, ATP-bi 100.0 6E-45 2.1E-49 371.5 25.2 215 29-264 340-567 (587)
38 4a82_A Cystic fibrosis transme 100.0 5.1E-45 1.7E-49 371.6 23.8 215 29-264 338-565 (578)
39 3b5x_A Lipid A export ATP-bind 100.0 5.1E-45 1.7E-49 371.9 23.8 214 29-264 340-568 (582)
40 3b60_A Lipid A export ATP-bind 100.0 6E-45 2E-49 371.4 24.3 215 29-264 340-568 (582)
41 2yl4_A ATP-binding cassette SU 100.0 1.3E-44 4.3E-49 369.9 23.2 212 31-263 342-570 (595)
42 3qf4_B Uncharacterized ABC tra 100.0 5.1E-45 1.8E-49 372.8 19.6 214 29-264 353-579 (598)
43 2bbs_A Cystic fibrosis transme 100.0 1.2E-44 4E-49 338.5 17.6 196 28-263 38-247 (290)
44 1yqt_A RNAse L inhibitor; ATP- 100.0 2.5E-42 8.7E-47 348.3 18.4 202 28-263 285-493 (538)
45 3bk7_A ABC transporter ATP-bin 100.0 4.6E-42 1.6E-46 350.2 19.3 202 28-263 355-563 (607)
46 3ozx_A RNAse L inhibitor; ATP 100.0 6.6E-42 2.3E-46 344.8 19.4 202 28-262 267-476 (538)
47 4f4c_A Multidrug resistance pr 100.0 1.2E-41 4.2E-46 373.9 20.8 216 30-265 1076-1306(1321)
48 3g5u_A MCG1178, multidrug resi 100.0 6.5E-41 2.2E-45 367.4 24.6 216 30-265 387-615 (1284)
49 4f4c_A Multidrug resistance pr 100.0 1E-40 3.4E-45 366.7 24.1 216 30-265 415-643 (1321)
50 3g5u_A MCG1178, multidrug resi 100.0 1.5E-40 5.2E-45 364.5 19.8 216 30-265 1030-1260(1284)
51 3j16_B RLI1P; ribosome recycli 100.0 2E-40 6.9E-45 337.7 17.0 199 34-264 350-560 (608)
52 3bk7_A ABC transporter ATP-bin 100.0 6.3E-40 2.2E-44 334.4 14.5 198 30-250 83-304 (607)
53 2iw3_A Elongation factor 3A; a 100.0 1.3E-39 4.3E-44 343.7 16.8 219 28-257 669-981 (986)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 5.7E-40 1.9E-44 331.2 13.2 197 31-250 21-234 (538)
55 2iw3_A Elongation factor 3A; a 100.0 9.6E-38 3.3E-42 329.5 23.4 195 30-263 435-635 (986)
56 3ux8_A Excinuclease ABC, A sub 100.0 5.9E-38 2E-42 324.7 17.0 209 51-265 30-300 (670)
57 3j16_B RLI1P; ribosome recycli 100.0 1.1E-37 3.8E-42 317.5 18.2 207 35-253 82-300 (608)
58 3ux8_A Excinuclease ABC, A sub 100.0 1.8E-36 6E-41 313.7 21.3 108 155-264 522-641 (670)
59 3ozx_A RNAse L inhibitor; ATP 100.0 3.7E-37 1.3E-41 310.1 11.7 198 34-251 3-214 (538)
60 2vf7_A UVRA2, excinuclease ABC 100.0 1.8E-34 6.3E-39 301.7 17.6 110 154-265 708-829 (842)
61 3pih_A Uvrabc system protein A 100.0 2.4E-33 8.2E-38 295.5 21.9 110 154-265 783-904 (916)
62 2r6f_A Excinuclease ABC subuni 100.0 5.1E-33 1.7E-37 291.7 20.8 108 155-264 824-943 (972)
63 2ygr_A Uvrabc system protein A 100.0 1.4E-32 4.6E-37 289.3 21.6 108 155-264 842-961 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 2.7E-36 9.4E-41 298.3 -11.3 194 28-262 116-337 (460)
65 4aby_A DNA repair protein RECN 100.0 2.3E-31 7.9E-36 260.0 15.6 80 174-256 296-381 (415)
66 4gp7_A Metallophosphoesterase; 100.0 3.4E-31 1.2E-35 228.7 4.2 146 57-240 1-165 (171)
67 3qf7_A RAD50; ABC-ATPase, ATPa 100.0 1.1E-29 3.7E-34 244.8 13.4 85 168-254 274-364 (365)
68 3b85_A Phosphate starvation-in 100.0 3.4E-31 1.2E-35 236.0 -5.7 157 51-251 12-171 (208)
69 1e69_A Chromosome segregation 99.9 6.6E-27 2.3E-31 221.6 16.8 90 168-260 214-310 (322)
70 1tq4_A IIGP1, interferon-induc 99.9 2.4E-29 8E-34 245.0 -10.3 174 52-250 36-254 (413)
71 1ye8_A Protein THEP1, hypothet 99.9 4.1E-27 1.4E-31 204.6 4.9 148 67-254 2-159 (178)
72 2v9p_A Replication protein E1; 99.9 3.7E-29 1.3E-33 234.5 -15.5 163 30-261 101-264 (305)
73 1znw_A Guanylate kinase, GMP k 99.9 6.3E-28 2.2E-32 214.2 -7.6 171 50-248 7-202 (207)
74 2o5v_A DNA replication and rep 99.9 4.2E-25 1.4E-29 211.7 9.7 84 170-261 261-354 (359)
75 1cr0_A DNA primase/helicase; R 99.9 9.5E-25 3.3E-29 203.9 9.1 182 52-252 22-237 (296)
76 1z6g_A Guanylate kinase; struc 99.9 1.5E-27 5.1E-32 213.8 -10.3 155 52-222 10-176 (218)
77 3qkt_A DNA double-strand break 99.9 6.3E-24 2.1E-28 202.5 14.0 78 169-248 244-327 (339)
78 3b9q_A Chloroplast SRP recepto 99.9 2.3E-26 7.9E-31 215.9 -4.5 179 54-253 89-285 (302)
79 2obl_A ESCN; ATPase, hydrolase 99.9 9.8E-27 3.4E-31 222.3 -7.8 203 28-263 43-255 (347)
80 2dpy_A FLII, flagellum-specifi 99.9 1.5E-26 5E-31 227.5 -7.2 200 29-263 130-344 (438)
81 1tf7_A KAIC; homohexamer, hexa 99.9 5.1E-26 1.8E-30 229.1 -5.7 181 28-249 10-209 (525)
82 2pt7_A CAG-ALFA; ATPase, prote 99.9 2E-25 6.7E-30 212.2 -2.1 133 54-252 160-292 (330)
83 2o8b_B DNA mismatch repair pro 99.9 1.2E-23 4.2E-28 224.9 9.3 175 28-259 748-938 (1022)
84 2og2_A Putative signal recogni 99.9 2.5E-25 8.7E-30 213.0 -4.2 177 56-253 148-342 (359)
85 1tf7_A KAIC; homohexamer, hexa 99.9 2.9E-23 9.9E-28 209.0 9.3 151 59-251 275-444 (525)
86 3thx_A DNA mismatch repair pro 99.9 8.5E-24 2.9E-28 223.8 4.6 153 51-261 648-811 (934)
87 2ehv_A Hypothetical protein PH 99.9 7.6E-24 2.6E-28 191.7 1.4 183 30-249 6-207 (251)
88 1f2t_B RAD50 ABC-ATPase; DNA d 99.9 4.7E-22 1.6E-26 167.5 11.1 83 168-252 52-142 (148)
89 2w0m_A SSO2452; RECA, SSPF, un 99.9 6.2E-22 2.1E-26 176.8 10.2 173 51-251 8-193 (235)
90 3pih_A Uvrabc system protein A 99.9 1E-21 3.5E-26 207.2 13.1 107 158-266 446-563 (916)
91 3thx_B DNA mismatch repair pro 99.9 3.8E-22 1.3E-26 210.7 7.7 143 51-243 659-804 (918)
92 3aez_A Pantothenate kinase; tr 99.8 1.6E-24 5.5E-29 204.2 -10.4 174 29-251 42-246 (312)
93 4a74_A DNA repair and recombin 99.8 2.9E-21 9.9E-26 172.5 9.5 150 61-251 21-201 (231)
94 2ygr_A Uvrabc system protein A 99.8 1.2E-20 4E-25 198.9 13.5 104 159-264 504-618 (993)
95 2r6f_A Excinuclease ABC subuni 99.8 7.5E-21 2.6E-25 199.8 12.0 103 159-263 487-600 (972)
96 1w1w_A Structural maintenance 99.8 2.4E-20 8.2E-25 183.2 15.0 75 172-248 332-410 (430)
97 3sop_A Neuronal-specific septi 99.8 1.4E-23 4.7E-28 194.1 -8.2 146 67-237 4-153 (270)
98 2jeo_A Uridine-cytidine kinase 99.8 3.5E-22 1.2E-26 181.7 0.3 161 50-251 10-180 (245)
99 2eyu_A Twitching motility prot 99.8 4.1E-22 1.4E-26 183.2 0.5 131 53-248 15-146 (261)
100 2vf7_A UVRA2, excinuclease ABC 99.8 3.2E-20 1.1E-24 194.3 12.6 104 159-264 362-476 (842)
101 1ewq_A DNA mismatch repair pro 99.8 2.6E-20 9E-25 193.9 5.9 133 51-241 565-704 (765)
102 1wb9_A DNA mismatch repair pro 99.8 2.4E-20 8.4E-25 195.1 4.8 156 51-256 594-751 (800)
103 1pui_A ENGB, probable GTP-bind 99.8 5.3E-21 1.8E-25 168.5 -0.4 178 30-222 3-199 (210)
104 2qnr_A Septin-2, protein NEDD5 99.8 4.4E-22 1.5E-26 186.7 -8.3 165 34-235 2-168 (301)
105 1nlf_A Regulatory protein REPA 99.8 6.6E-19 2.3E-23 163.0 11.6 152 61-238 26-185 (279)
106 2cvh_A DNA repair and recombin 99.8 3.8E-19 1.3E-23 157.7 9.5 155 52-250 6-185 (220)
107 1pzn_A RAD51, DNA repair and r 99.8 8.8E-20 3E-24 174.5 4.6 166 52-257 117-309 (349)
108 3szr_A Interferon-induced GTP- 99.8 7E-21 2.4E-25 194.5 -3.7 196 28-259 8-233 (608)
109 2i3b_A HCR-ntpase, human cance 99.8 2.4E-21 8.3E-26 169.7 -7.1 156 65-255 1-168 (189)
110 3jvv_A Twitching mobility prot 99.7 2.3E-19 8E-24 171.8 2.6 136 52-250 103-246 (356)
111 3asz_A Uridine kinase; cytidin 99.7 4E-21 1.4E-25 170.1 -9.0 143 62-235 3-162 (211)
112 4ad8_A DNA repair protein RECN 99.7 5E-18 1.7E-22 170.5 9.5 78 170-250 393-473 (517)
113 3kta_B Chromosome segregation 99.7 1.4E-17 4.7E-22 143.6 10.9 82 168-252 59-146 (173)
114 1rj9_A FTSY, signal recognitio 99.7 9.5E-19 3.2E-23 164.2 1.9 155 64-235 101-259 (304)
115 1n0w_A DNA repair protein RAD5 99.7 2E-16 6.7E-21 142.2 13.9 149 61-250 20-209 (243)
116 1lw7_A Transcriptional regulat 99.7 1.2E-19 4.1E-24 174.5 -10.0 170 55-249 158-343 (365)
117 2qag_C Septin-7; cell cycle, c 99.7 2.2E-18 7.4E-23 168.2 -2.9 166 29-237 10-180 (418)
118 1s96_A Guanylate kinase, GMP k 99.6 5.2E-17 1.8E-21 145.4 2.7 148 59-262 10-159 (219)
119 2bdt_A BH3686; alpha-beta prot 99.6 6.3E-19 2.2E-23 153.4 -12.4 164 65-262 2-183 (189)
120 2ewv_A Twitching motility prot 99.6 6.9E-17 2.4E-21 155.7 0.5 128 55-247 128-256 (372)
121 3auy_A DNA double-strand break 99.6 1.8E-15 6.1E-20 145.7 9.5 77 169-248 276-359 (371)
122 3lda_A DNA repair protein RAD5 99.6 7.6E-15 2.6E-19 142.4 13.6 62 190-251 272-364 (400)
123 2gza_A Type IV secretion syste 99.6 3.1E-17 1.1E-21 157.5 -4.4 139 55-251 165-303 (361)
124 2qag_B Septin-6, protein NEDD5 99.6 3.9E-16 1.3E-20 152.0 0.9 171 30-234 16-219 (427)
125 3ec2_A DNA replication protein 99.6 5.4E-16 1.9E-20 133.7 1.3 47 189-236 98-145 (180)
126 2bbw_A Adenylate kinase 4, AK4 99.5 3.9E-16 1.3E-20 141.6 -0.7 137 64-222 26-199 (246)
127 1zp6_A Hypothetical protein AT 99.5 2.3E-15 7.8E-20 130.6 1.8 134 61-220 5-148 (191)
128 2qm8_A GTPase/ATPase; G protei 99.5 2.1E-16 7.1E-21 150.4 -6.1 66 30-104 29-94 (337)
129 1udx_A The GTP-binding protein 99.5 2.5E-15 8.4E-20 146.5 0.9 162 55-240 147-315 (416)
130 2kjq_A DNAA-related protein; s 99.5 2.4E-14 8.3E-19 120.3 6.4 44 188-233 80-124 (149)
131 1htw_A HI0065; nucleotide-bind 99.5 1.8E-16 6E-21 134.8 -7.6 63 31-103 8-70 (158)
132 3e70_C DPA, signal recognition 99.5 8.4E-14 2.9E-18 131.7 9.0 170 61-253 125-307 (328)
133 1p9r_A General secretion pathw 99.5 2.7E-16 9.3E-21 153.4 -9.4 139 53-197 157-315 (418)
134 1nij_A Hypothetical protein YJ 99.5 1.6E-15 5.6E-20 143.0 -3.9 163 66-242 5-197 (318)
135 2f1r_A Molybdopterin-guanine d 99.4 9.9E-16 3.4E-20 131.8 -6.4 137 66-222 3-162 (171)
136 2oap_1 GSPE-2, type II secreti 99.4 2.3E-17 7.8E-22 165.0 -20.0 177 53-242 248-458 (511)
137 2yhs_A FTSY, cell division pro 99.4 7.3E-14 2.5E-18 137.9 3.9 165 55-237 283-451 (503)
138 1sxj_E Activator 1 40 kDa subu 99.4 6.7E-13 2.3E-17 126.0 9.1 144 67-244 38-185 (354)
139 2dr3_A UPF0273 protein PH0284; 99.4 1.9E-12 6.6E-17 116.1 11.4 60 190-249 127-196 (247)
140 1lvg_A Guanylate kinase, GMP k 99.4 1.4E-15 4.8E-20 133.7 -9.5 56 184-248 116-172 (198)
141 2rcn_A Probable GTPase ENGC; Y 99.4 7.2E-13 2.5E-17 126.4 7.1 116 54-188 205-328 (358)
142 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 1.4E-14 4.9E-19 139.9 -6.3 175 61-258 16-208 (392)
143 1in4_A RUVB, holliday junction 99.3 6.1E-16 2.1E-20 146.9 -16.8 171 30-243 18-211 (334)
144 1ls1_A Signal recognition part 99.3 2.6E-12 9E-17 119.8 8.2 132 31-219 77-209 (295)
145 1vma_A Cell division protein F 99.3 1E-12 3.4E-17 123.2 5.3 114 57-220 96-212 (306)
146 1odf_A YGR205W, hypothetical 3 99.3 1.1E-13 3.6E-18 128.9 -1.9 124 63-207 29-168 (290)
147 1sq5_A Pantothenate kinase; P- 99.3 1.8E-14 6.2E-19 135.2 -7.4 62 29-101 36-121 (308)
148 3lnc_A Guanylate kinase, GMP k 99.3 3.8E-15 1.3E-19 133.7 -12.0 39 52-90 14-53 (231)
149 2px0_A Flagellar biosynthesis 99.3 3.3E-12 1.1E-16 119.2 5.9 141 63-255 103-247 (296)
150 3euj_A Chromosome partition pr 99.3 1.7E-12 5.9E-17 128.3 3.9 52 52-104 17-68 (483)
151 3c8u_A Fructokinase; YP_612366 99.3 5.5E-14 1.9E-18 124.2 -6.4 138 62-243 19-168 (208)
152 2r6a_A DNAB helicase, replicat 99.2 1.4E-11 4.7E-16 121.6 9.2 176 52-252 190-401 (454)
153 2x8a_A Nuclear valosin-contain 99.2 1.4E-14 4.7E-19 133.9 -13.0 144 52-216 33-190 (274)
154 2ius_A DNA translocase FTSK; n 99.2 1E-12 3.5E-17 130.7 -0.6 174 57-246 159-361 (512)
155 2zr9_A Protein RECA, recombina 99.2 9.2E-11 3.1E-15 111.8 11.5 77 180-256 126-236 (349)
156 2yv5_A YJEQ protein; hydrolase 99.1 2.1E-12 7.1E-17 120.9 -2.2 115 60-186 160-300 (302)
157 1oix_A RAS-related protein RAB 98.9 7.4E-10 2.5E-14 95.9 5.8 37 180-218 152-188 (191)
158 1jjv_A Dephospho-COA kinase; P 98.9 1.2E-09 4.1E-14 95.6 5.7 126 67-248 4-131 (206)
159 1qhl_A Protein (cell division 98.9 2.1E-11 7.2E-16 109.3 -5.9 57 30-103 9-65 (227)
160 3tr0_A Guanylate kinase, GMP k 98.9 9.9E-10 3.4E-14 95.8 4.8 41 59-103 1-41 (205)
161 3hr8_A Protein RECA; alpha and 98.9 2.7E-09 9.1E-14 101.8 7.8 48 53-100 47-97 (356)
162 3nwj_A ATSK2; P loop, shikimat 98.9 1.2E-10 4E-15 106.0 -1.7 52 29-88 16-71 (250)
163 1t9h_A YLOQ, probable GTPase E 98.9 1E-10 3.5E-15 109.4 -2.4 44 60-103 168-214 (307)
164 1iy2_A ATP-dependent metallopr 98.8 1.8E-12 6.1E-17 119.5 -16.4 58 32-102 51-108 (278)
165 2ce7_A Cell division protein F 98.8 3.5E-09 1.2E-13 104.8 5.5 117 53-238 39-168 (476)
166 2f9l_A RAB11B, member RAS onco 98.8 6.9E-10 2.4E-14 96.5 -0.7 37 182-220 130-166 (199)
167 3k1j_A LON protease, ATP-depen 98.8 1.8E-09 6.1E-14 110.2 2.1 162 50-218 45-227 (604)
168 1u0l_A Probable GTPase ENGC; p 98.8 2.6E-09 9E-14 99.6 3.1 45 60-104 164-211 (301)
169 3kta_A Chromosome segregation 98.7 7.1E-09 2.4E-13 88.8 4.4 39 56-95 18-56 (182)
170 2xau_A PRE-mRNA-splicing facto 98.7 9.9E-09 3.4E-13 107.5 5.5 73 170-243 187-261 (773)
171 3uie_A Adenylyl-sulfate kinase 98.7 1E-09 3.6E-14 95.9 -2.2 58 34-101 3-62 (200)
172 1v5w_A DMC1, meiotic recombina 98.7 1.3E-07 4.3E-12 89.8 11.4 56 180-235 204-275 (343)
173 3a00_A Guanylate kinase, GMP k 98.6 8E-09 2.7E-13 89.2 2.1 28 65-92 1-28 (186)
174 2z43_A DNA repair and recombin 98.6 1.7E-07 5.7E-12 88.2 11.1 57 179-235 188-259 (324)
175 4a1f_A DNAB helicase, replicat 98.6 4.7E-08 1.6E-12 92.5 7.1 129 52-232 33-164 (338)
176 2j41_A Guanylate kinase; GMP, 98.6 2.4E-08 8.1E-13 86.9 3.3 35 60-94 1-35 (207)
177 2qtf_A Protein HFLX, GTP-bindi 98.6 1.3E-07 4.3E-12 90.6 8.5 62 157-222 282-354 (364)
178 3t34_A Dynamin-related protein 98.5 1.4E-07 4.6E-12 90.0 8.0 60 172-232 153-212 (360)
179 4eun_A Thermoresistant glucoki 98.5 2.6E-08 8.8E-13 86.9 2.6 45 54-102 18-62 (200)
180 2e87_A Hypothetical protein PH 98.5 2.3E-07 8E-12 88.3 8.8 65 169-236 227-294 (357)
181 1fnn_A CDC6P, cell division co 98.5 3.7E-07 1.3E-11 86.8 9.9 51 190-241 124-176 (389)
182 3vaa_A Shikimate kinase, SK; s 98.5 6.7E-08 2.3E-12 84.2 3.8 38 51-88 11-48 (199)
183 4e22_A Cytidylate kinase; P-lo 98.4 3.5E-08 1.2E-12 89.5 -0.0 41 54-97 19-62 (252)
184 3kl4_A SRP54, signal recogniti 98.4 6.8E-07 2.3E-11 87.2 8.9 39 64-102 96-134 (433)
185 1kgd_A CASK, peripheral plasma 98.3 1.6E-07 5.5E-12 80.5 2.9 27 64-90 4-30 (180)
186 2vp4_A Deoxynucleoside kinase; 98.3 1.3E-07 4.5E-12 84.4 2.4 40 59-102 14-53 (230)
187 1ixz_A ATP-dependent metallopr 98.3 1.3E-08 4.4E-13 92.0 -4.7 59 31-102 26-84 (254)
188 3tqc_A Pantothenate kinase; bi 98.3 1.1E-08 3.6E-13 96.3 -5.6 50 51-100 72-129 (321)
189 1rz3_A Hypothetical protein rb 98.3 1.2E-07 4E-12 82.9 1.1 42 61-102 18-59 (201)
190 2z4s_A Chromosomal replication 98.3 5.7E-07 2E-11 88.1 5.2 68 190-258 193-263 (440)
191 1zu4_A FTSY; GTPase, signal re 98.3 1.5E-07 5.3E-12 88.4 0.8 49 55-103 95-143 (320)
192 2qby_A CDC6 homolog 1, cell di 98.2 3.9E-07 1.3E-11 86.3 3.3 27 63-89 43-69 (386)
193 3ney_A 55 kDa erythrocyte memb 98.2 3.9E-07 1.3E-11 79.6 2.8 31 59-89 13-43 (197)
194 3tau_A Guanylate kinase, GMP k 98.2 5.1E-07 1.7E-11 79.2 3.6 29 63-91 6-34 (208)
195 2dy1_A Elongation factor G; tr 98.2 4.5E-07 1.5E-11 93.4 3.1 38 59-96 3-42 (665)
196 1svm_A Large T antigen; AAA+ f 98.2 1.8E-07 6E-12 89.9 0.1 43 52-97 156-198 (377)
197 3bh0_A DNAB-like replicative h 98.2 1.6E-06 5.4E-11 81.2 6.4 130 52-233 55-190 (315)
198 1ega_A Protein (GTP-binding pr 98.2 2.4E-06 8.1E-11 79.5 7.6 65 174-245 101-170 (301)
199 1u94_A RECA protein, recombina 98.2 1.5E-05 5E-10 75.9 13.1 71 181-251 129-233 (356)
200 1knq_A Gluconate kinase; ALFA/ 98.2 4.6E-07 1.6E-11 76.8 2.0 35 63-101 6-40 (175)
201 3cr8_A Sulfate adenylyltranfer 98.1 3.9E-07 1.4E-11 91.6 1.1 41 61-101 365-407 (552)
202 2p67_A LAO/AO transport system 98.1 2.6E-08 8.8E-13 94.5 -7.6 64 30-102 30-93 (341)
203 3b9p_A CG5977-PA, isoform A; A 98.1 7E-06 2.4E-10 75.5 7.9 62 175-236 97-171 (297)
204 1f2t_A RAD50 ABC-ATPase; DNA d 98.0 2.5E-06 8.6E-11 71.0 3.6 31 56-87 15-45 (149)
205 1ypw_A Transitional endoplasmi 98.0 3.9E-06 1.3E-10 88.2 5.8 30 60-89 233-262 (806)
206 1kag_A SKI, shikimate kinase I 98.0 1.6E-06 5.6E-11 73.0 2.3 26 64-89 3-28 (173)
207 3ice_A Transcription terminati 98.0 1E-06 3.5E-11 84.3 0.9 52 30-89 133-198 (422)
208 2q6t_A DNAB replication FORK h 98.0 6E-05 2E-09 73.7 13.2 172 52-249 187-397 (444)
209 2i1q_A DNA repair and recombin 98.0 2.1E-05 7.3E-10 73.4 9.4 35 53-87 85-120 (322)
210 3cf0_A Transitional endoplasmi 97.9 1.3E-05 4.4E-10 74.3 6.8 29 60-88 44-72 (301)
211 2qt1_A Nicotinamide riboside k 97.9 4.3E-06 1.5E-10 72.8 2.6 33 57-89 13-45 (207)
212 2www_A Methylmalonic aciduria 97.9 3.5E-06 1.2E-10 80.1 1.8 41 63-103 72-112 (349)
213 2pez_A Bifunctional 3'-phospho 97.9 3.6E-06 1.2E-10 71.6 1.6 29 63-91 3-31 (179)
214 1cke_A CK, MSSA, protein (cyti 97.8 2.1E-06 7.3E-11 75.6 -0.2 25 65-89 5-29 (227)
215 4eaq_A DTMP kinase, thymidylat 97.8 6.9E-06 2.4E-10 73.2 2.5 43 53-96 11-56 (229)
216 3qks_A DNA double-strand break 97.8 1.1E-05 3.6E-10 70.6 3.6 30 57-87 16-45 (203)
217 3lxx_A GTPase IMAP family memb 97.8 0.00026 9E-09 62.8 12.2 44 189-232 110-154 (239)
218 3bgw_A DNAB-like replicative h 97.8 0.00021 7.1E-09 70.0 12.4 36 52-87 184-219 (444)
219 3m6a_A ATP-dependent protease 97.7 3E-06 1E-10 85.2 -1.2 48 52-100 96-143 (543)
220 1xp8_A RECA protein, recombina 97.7 0.00021 7.1E-09 68.2 11.0 27 61-87 70-96 (366)
221 3auy_A DNA double-strand break 97.7 4E-05 1.4E-09 73.2 5.8 32 54-86 15-46 (371)
222 4ad8_A DNA repair protein RECN 97.7 6E-06 2.1E-10 82.4 0.1 35 53-88 49-83 (517)
223 2ffh_A Protein (FFH); SRP54, s 97.7 1.1E-05 3.8E-10 78.5 1.9 179 33-252 79-275 (425)
224 1y63_A LMAJ004144AAA protein; 97.7 2.1E-05 7.1E-10 67.3 3.1 31 57-87 2-32 (184)
225 1m7g_A Adenylylsulfate kinase; 97.6 6.8E-06 2.3E-10 72.0 -0.0 41 60-100 20-62 (211)
226 1f6b_A SAR1; gtpases, N-termin 97.6 1.2E-05 4E-10 69.5 1.0 36 51-87 12-47 (198)
227 2w58_A DNAI, primosome compone 97.6 0.00011 3.8E-09 63.4 6.8 23 66-88 55-77 (202)
228 2dhr_A FTSH; AAA+ protein, hex 97.6 1.4E-05 4.8E-10 79.4 1.2 48 52-103 53-100 (499)
229 1l8q_A Chromosomal replication 97.6 0.00012 4.2E-09 68.1 7.5 42 190-232 97-139 (324)
230 1j8m_F SRP54, signal recogniti 97.6 1E-05 3.4E-10 75.2 -0.2 58 33-102 77-135 (297)
231 2qag_A Septin-2, protein NEDD5 97.6 5.9E-06 2E-10 78.8 -1.8 50 30-94 17-66 (361)
232 2qor_A Guanylate kinase; phosp 97.6 3.1E-05 1.1E-09 67.3 3.0 29 61-89 8-36 (204)
233 2if2_A Dephospho-COA kinase; a 97.5 2.7E-05 9.4E-10 67.3 2.5 21 67-87 3-23 (204)
234 3io5_A Recombination and repai 97.5 0.00042 1.4E-08 64.6 10.2 59 177-235 93-173 (333)
235 2yvu_A Probable adenylyl-sulfa 97.5 2.2E-05 7.6E-10 67.0 1.4 36 61-96 9-44 (186)
236 1mky_A Probable GTP-binding pr 97.5 7.8E-05 2.7E-09 72.8 5.3 36 67-102 182-229 (439)
237 1m2o_B GTP-binding protein SAR 97.5 5.2E-05 1.8E-09 64.9 3.3 34 53-87 12-45 (190)
238 2gj8_A MNME, tRNA modification 97.5 5.1E-05 1.7E-09 63.9 2.9 26 64-89 3-28 (172)
239 1q57_A DNA primase/helicase; d 97.4 0.00067 2.3E-08 67.2 11.0 69 180-249 341-441 (503)
240 3h4m_A Proteasome-activating n 97.4 0.00022 7.6E-09 64.8 6.7 55 184-238 103-170 (285)
241 3cmw_A Protein RECA, recombina 97.4 0.00074 2.5E-08 75.5 11.8 28 61-88 728-755 (1706)
242 2ohf_A Protein OLA1, GTP-bindi 97.4 8.2E-05 2.8E-09 71.6 3.3 40 61-100 18-68 (396)
243 2wji_A Ferrous iron transport 97.3 0.00014 4.8E-09 60.5 4.3 23 67-89 5-27 (165)
244 2ga8_A Hypothetical 39.9 kDa p 97.3 2E-05 6.8E-10 74.7 -1.2 37 53-89 10-48 (359)
245 2wjg_A FEOB, ferrous iron tran 97.3 0.00014 4.7E-09 61.5 3.9 22 67-88 9-30 (188)
246 1sxj_C Activator 1 40 kDa subu 97.3 2E-05 6.7E-10 74.2 -1.6 44 51-94 30-75 (340)
247 3cm0_A Adenylate kinase; ATP-b 97.3 9.8E-05 3.4E-09 62.7 2.7 25 63-87 2-26 (186)
248 2zts_A Putative uncharacterize 97.3 0.00085 2.9E-08 59.2 8.9 61 188-248 132-206 (251)
249 2v1u_A Cell division control p 97.3 0.00016 5.6E-09 68.1 4.3 26 63-88 42-67 (387)
250 3t61_A Gluconokinase; PSI-biol 97.3 0.00012 4.2E-09 63.2 3.0 24 65-88 18-41 (202)
251 2zej_A Dardarin, leucine-rich 97.2 0.00016 5.5E-09 61.2 3.6 23 67-89 4-26 (184)
252 1q3t_A Cytidylate kinase; nucl 97.2 0.00013 4.4E-09 64.9 3.1 25 63-87 14-38 (236)
253 3kb2_A SPBC2 prophage-derived 97.1 0.00022 7.7E-09 59.3 3.4 22 67-88 3-24 (173)
254 3r20_A Cytidylate kinase; stru 97.1 9.4E-05 3.2E-09 66.1 1.0 24 64-87 8-31 (233)
255 1np6_A Molybdopterin-guanine d 97.1 0.00017 5.7E-09 61.6 2.3 26 66-91 7-32 (174)
256 1lv7_A FTSH; alpha/beta domain 97.1 0.00013 4.4E-09 65.5 1.7 34 54-89 36-69 (257)
257 1qhx_A CPT, protein (chloramph 97.1 0.00029 9.8E-09 59.3 3.8 24 65-88 3-26 (178)
258 3dm5_A SRP54, signal recogniti 97.1 0.0046 1.6E-07 60.2 12.2 27 64-90 99-125 (443)
259 4ag6_A VIRB4 ATPase, type IV s 97.0 0.00029 9.9E-09 67.5 3.4 48 190-238 261-311 (392)
260 2p5t_B PEZT; postsegregational 97.0 0.0002 6.9E-09 64.4 2.1 39 61-101 28-66 (253)
261 1kht_A Adenylate kinase; phosp 97.0 0.00037 1.3E-08 59.1 3.6 23 65-87 3-25 (192)
262 3cmw_A Protein RECA, recombina 97.0 0.0064 2.2E-07 68.1 13.8 35 52-87 368-405 (1706)
263 3lw7_A Adenylate kinase relate 97.0 0.00039 1.3E-08 57.7 3.3 19 67-85 3-21 (179)
264 2b8t_A Thymidine kinase; deoxy 97.0 0.00057 2E-08 60.6 4.4 53 190-248 88-150 (223)
265 1vht_A Dephospho-COA kinase; s 96.9 0.0004 1.4E-08 60.6 3.2 23 65-87 4-26 (218)
266 2rhm_A Putative kinase; P-loop 96.9 0.00033 1.1E-08 59.5 2.7 25 63-87 3-27 (193)
267 3iij_A Coilin-interacting nucl 96.9 0.00028 9.7E-09 59.6 1.8 25 63-87 9-33 (180)
268 2jaq_A Deoxyguanosine kinase; 96.9 0.00049 1.7E-08 58.9 3.3 22 67-88 2-23 (205)
269 2v54_A DTMP kinase, thymidylat 96.9 0.00056 1.9E-08 58.7 3.6 26 64-89 3-28 (204)
270 1via_A Shikimate kinase; struc 96.9 0.00043 1.5E-08 58.3 2.8 22 67-88 6-27 (175)
271 1ex7_A Guanylate kinase; subst 96.9 0.0005 1.7E-08 59.2 3.1 20 68-87 4-23 (186)
272 3trf_A Shikimate kinase, SK; a 96.9 0.00061 2.1E-08 57.6 3.6 24 64-87 4-27 (185)
273 3d8b_A Fidgetin-like protein 1 96.9 0.0021 7.2E-08 60.7 7.7 26 63-88 115-140 (357)
274 2ze6_A Isopentenyl transferase 96.8 0.00056 1.9E-08 61.6 3.3 22 67-88 3-24 (253)
275 3cmu_A Protein RECA, recombina 96.8 0.01 3.6E-07 67.3 14.0 70 181-250 449-552 (2050)
276 1ly1_A Polynucleotide kinase; 96.8 0.00062 2.1E-08 57.0 3.3 22 66-87 3-24 (181)
277 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.0031 1.1E-07 58.8 8.2 28 60-87 118-145 (331)
278 1nn5_A Similar to deoxythymidy 96.8 0.0007 2.4E-08 58.5 3.4 26 62-87 6-31 (215)
279 3k53_A Ferrous iron transport 96.8 0.00062 2.1E-08 61.7 3.1 48 200-247 144-191 (271)
280 3euj_A Chromosome partition pr 96.8 0.0027 9.3E-08 62.5 7.8 71 171-248 377-464 (483)
281 1gtv_A TMK, thymidylate kinase 96.8 0.00033 1.1E-08 60.7 1.1 24 67-90 2-25 (214)
282 2wwf_A Thymidilate kinase, put 96.7 0.00078 2.7E-08 58.2 3.4 25 63-87 8-32 (212)
283 1uf9_A TT1252 protein; P-loop, 96.7 0.00069 2.4E-08 58.0 3.0 22 66-87 9-30 (203)
284 2c95_A Adenylate kinase 1; tra 96.7 0.0008 2.7E-08 57.2 3.4 25 63-87 7-31 (196)
285 1jal_A YCHF protein; nucleotid 96.7 0.001 3.5E-08 63.2 4.4 36 65-100 2-48 (363)
286 2plr_A DTMP kinase, probable t 96.7 0.00079 2.7E-08 57.9 3.2 25 64-88 3-27 (213)
287 1gvn_B Zeta; postsegregational 96.7 0.00067 2.3E-08 62.3 2.9 35 64-100 32-66 (287)
288 1tev_A UMP-CMP kinase; ploop, 96.7 0.00086 2.9E-08 56.8 3.1 23 65-87 3-25 (196)
289 3hu3_A Transitional endoplasmi 96.6 0.0033 1.1E-07 62.2 7.6 27 62-88 235-261 (489)
290 1nks_A Adenylate kinase; therm 96.6 0.00093 3.2E-08 56.5 3.0 22 67-88 3-24 (194)
291 2vli_A Antibiotic resistance p 96.6 0.00075 2.6E-08 56.8 2.4 24 64-87 4-27 (183)
292 2z0h_A DTMP kinase, thymidylat 96.6 0.0011 3.6E-08 56.5 3.3 22 67-88 2-23 (197)
293 2bwj_A Adenylate kinase 5; pho 96.6 0.00038 1.3E-08 59.5 0.3 26 62-87 9-34 (199)
294 3ake_A Cytidylate kinase; CMP 96.6 0.0011 3.8E-08 56.9 3.3 22 67-88 4-25 (208)
295 3llm_A ATP-dependent RNA helic 96.6 0.00078 2.7E-08 59.7 2.3 26 61-86 72-97 (235)
296 1xjc_A MOBB protein homolog; s 96.6 0.0013 4.3E-08 55.8 3.3 25 66-90 5-29 (169)
297 1aky_A Adenylate kinase; ATP:A 96.5 0.0015 5.3E-08 57.0 3.8 24 64-87 3-26 (220)
298 3ihw_A Centg3; RAS, centaurin, 96.5 0.003 1E-07 53.4 5.4 21 67-87 22-42 (184)
299 3b1v_A Ferrous iron uptake tra 96.5 0.0014 4.8E-08 59.7 3.5 23 67-89 5-27 (272)
300 1zd8_A GTP:AMP phosphotransfer 96.5 0.0014 4.9E-08 57.5 3.4 25 63-87 5-29 (227)
301 1xx6_A Thymidine kinase; NESG, 96.5 0.003 1E-07 54.5 5.2 52 191-248 81-142 (191)
302 3fb4_A Adenylate kinase; psych 96.5 0.0015 5.1E-08 56.7 3.3 21 67-87 2-22 (216)
303 2ged_A SR-beta, signal recogni 96.4 0.0013 4.5E-08 55.6 2.8 23 66-88 49-71 (193)
304 2pbr_A DTMP kinase, thymidylat 96.4 0.0016 5.6E-08 55.1 3.3 21 67-87 2-22 (195)
305 1fzq_A ADP-ribosylation factor 96.4 0.0015 5.1E-08 55.1 3.0 22 67-88 18-39 (181)
306 2cdn_A Adenylate kinase; phosp 96.4 0.002 6.7E-08 55.4 3.8 24 64-87 19-42 (201)
307 2r8r_A Sensor protein; KDPD, P 96.4 0.00021 7.2E-09 63.4 -2.4 44 188-232 81-125 (228)
308 3q72_A GTP-binding protein RAD 96.4 0.0015 5.3E-08 53.5 3.0 22 67-88 4-25 (166)
309 1e6c_A Shikimate kinase; phosp 96.4 0.0014 4.9E-08 54.5 2.8 22 66-87 3-24 (173)
310 2pt5_A Shikimate kinase, SK; a 96.4 0.0018 6.3E-08 53.6 3.4 21 67-87 2-22 (168)
311 2nzj_A GTP-binding protein REM 96.4 0.002 6.8E-08 53.2 3.5 22 67-88 6-27 (175)
312 3dl0_A Adenylate kinase; phosp 96.4 0.0018 6.2E-08 56.2 3.3 21 67-87 2-22 (216)
313 2erx_A GTP-binding protein DI- 96.4 0.0021 7.1E-08 52.8 3.5 22 67-88 5-26 (172)
314 1qf9_A UMP/CMP kinase, protein 96.3 0.0018 6.1E-08 54.7 3.0 22 66-87 7-28 (194)
315 3q85_A GTP-binding protein REM 96.3 0.0021 7.3E-08 52.8 3.4 22 67-88 4-25 (169)
316 1zak_A Adenylate kinase; ATP:A 96.3 0.0016 5.5E-08 56.9 2.8 24 64-87 4-27 (222)
317 3lxw_A GTPase IMAP family memb 96.3 0.002 6.8E-08 57.7 3.4 59 177-236 88-151 (247)
318 2iyv_A Shikimate kinase, SK; t 96.3 0.0017 5.8E-08 54.9 2.8 22 66-87 3-24 (184)
319 3tw8_B RAS-related protein RAB 96.3 0.0021 7.1E-08 53.3 3.3 22 67-88 11-32 (181)
320 1zuh_A Shikimate kinase; alpha 96.3 0.0023 7.8E-08 53.3 3.5 22 66-87 8-29 (168)
321 1z2a_A RAS-related protein RAB 96.3 0.0018 6E-08 53.1 2.7 22 67-88 7-28 (168)
322 1ukz_A Uridylate kinase; trans 96.3 0.0021 7.2E-08 55.2 3.3 23 65-87 15-37 (203)
323 2grj_A Dephospho-COA kinase; T 96.3 0.0021 7.3E-08 55.4 3.3 22 66-87 13-34 (192)
324 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.002 6.9E-08 58.1 3.2 24 64-87 3-26 (260)
325 3cmu_A Protein RECA, recombina 96.3 0.026 9E-07 64.1 12.7 36 54-89 719-756 (2050)
326 2lkc_A Translation initiation 96.3 0.0028 9.5E-08 52.5 3.9 25 64-88 7-31 (178)
327 2dyk_A GTP-binding protein; GT 96.3 0.0019 6.6E-08 52.5 2.8 22 67-88 3-24 (161)
328 4fcw_A Chaperone protein CLPB; 96.3 0.0013 4.6E-08 60.2 2.0 43 52-94 23-76 (311)
329 1svi_A GTP-binding protein YSX 96.3 0.002 6.9E-08 54.4 2.9 23 66-88 24-46 (195)
330 2ce2_X GTPase HRAS; signaling 96.2 0.0018 6.1E-08 52.7 2.4 22 67-88 5-26 (166)
331 1uj2_A Uridine-cytidine kinase 96.2 0.0023 7.7E-08 57.3 3.3 22 66-87 23-44 (252)
332 3pqc_A Probable GTP-binding pr 96.2 0.0021 7.2E-08 54.1 2.9 22 67-88 25-46 (195)
333 1moz_A ARL1, ADP-ribosylation 96.2 0.0016 5.4E-08 54.4 2.0 22 66-87 19-40 (183)
334 1kao_A RAP2A; GTP-binding prot 96.2 0.0021 7.2E-08 52.4 2.8 22 67-88 5-26 (167)
335 1u8z_A RAS-related protein RAL 96.2 0.0022 7.4E-08 52.3 2.7 22 67-88 6-27 (168)
336 1z0j_A RAB-22, RAS-related pro 96.2 0.0022 7.5E-08 52.6 2.8 22 67-88 8-29 (170)
337 1z08_A RAS-related protein RAB 96.2 0.0022 7.6E-08 52.6 2.8 22 67-88 8-29 (170)
338 3bos_A Putative DNA replicatio 96.2 0.0029 1E-07 55.1 3.7 25 64-88 51-75 (242)
339 1ky3_A GTP-binding protein YPT 96.2 0.0023 7.7E-08 53.1 2.8 22 67-88 10-31 (182)
340 2cxx_A Probable GTP-binding pr 96.2 0.0024 8.3E-08 53.5 2.9 22 67-88 3-24 (190)
341 2xb4_A Adenylate kinase; ATP-b 96.2 0.0027 9.3E-08 55.7 3.3 21 67-87 2-22 (223)
342 1ek0_A Protein (GTP-binding pr 96.2 0.0023 8E-08 52.3 2.7 22 67-88 5-26 (170)
343 1c1y_A RAS-related protein RAP 96.1 0.0024 8.3E-08 52.2 2.7 22 67-88 5-26 (167)
344 4b4t_K 26S protease regulatory 96.1 0.0077 2.6E-07 58.4 6.6 27 62-88 203-229 (428)
345 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.0024 8.4E-08 52.8 2.8 22 67-88 9-30 (177)
346 1wf3_A GTP-binding protein; GT 96.1 0.0028 9.7E-08 58.5 3.4 22 67-88 9-30 (301)
347 4b4t_J 26S protease regulatory 96.1 0.0066 2.3E-07 58.3 6.1 55 184-238 234-301 (405)
348 1g16_A RAS-related protein SEC 96.1 0.0022 7.6E-08 52.6 2.4 22 67-88 5-26 (170)
349 1a7j_A Phosphoribulokinase; tr 96.1 0.0015 5E-08 60.2 1.4 24 64-87 4-27 (290)
350 4b4t_L 26S protease subunit RP 96.1 0.011 3.6E-07 57.6 7.5 57 182-238 265-334 (437)
351 3tlx_A Adenylate kinase 2; str 96.1 0.0029 9.8E-08 56.5 3.2 24 64-87 28-51 (243)
352 2f6r_A COA synthase, bifunctio 96.1 0.0027 9.2E-08 58.0 3.0 21 66-86 76-96 (281)
353 2fn4_A P23, RAS-related protei 96.1 0.0024 8.1E-08 53.0 2.5 22 67-88 11-32 (181)
354 3iby_A Ferrous iron transport 96.1 0.0029 9.9E-08 57.0 3.1 22 67-88 3-24 (256)
355 3cbq_A GTP-binding protein REM 96.0 0.0028 9.6E-08 54.2 2.8 22 67-88 25-46 (195)
356 2hxs_A RAB-26, RAS-related pro 96.0 0.0033 1.1E-07 52.0 3.2 22 67-88 8-29 (178)
357 2oil_A CATX-8, RAS-related pro 96.0 0.0029 9.7E-08 53.5 2.7 22 67-88 27-48 (193)
358 4dsu_A GTPase KRAS, isoform 2B 96.0 0.0029 9.9E-08 52.9 2.8 22 67-88 6-27 (189)
359 1r2q_A RAS-related protein RAB 96.0 0.0029 1E-07 51.7 2.7 21 67-87 8-28 (170)
360 3clv_A RAB5 protein, putative; 96.0 0.0029 9.9E-08 53.3 2.8 22 67-88 9-30 (208)
361 1upt_A ARL1, ADP-ribosylation 96.0 0.0029 1E-07 52.0 2.7 21 67-87 9-29 (171)
362 3iev_A GTP-binding protein ERA 96.0 0.0034 1.2E-07 58.1 3.4 24 64-88 10-33 (308)
363 3v9p_A DTMP kinase, thymidylat 96.0 0.0031 1E-07 56.0 2.9 27 62-88 22-48 (227)
364 3t5d_A Septin-7; GTP-binding p 96.0 0.0031 1.1E-07 57.2 3.0 22 67-88 10-31 (274)
365 3bc1_A RAS-related protein RAB 96.0 0.003 1E-07 52.9 2.7 22 67-88 13-34 (195)
366 3cf2_A TER ATPase, transitiona 96.0 0.015 5.2E-07 60.7 8.5 27 62-88 235-261 (806)
367 3t1o_A Gliding protein MGLA; G 96.0 0.003 1E-07 53.1 2.7 23 67-89 16-38 (198)
368 2xtp_A GTPase IMAP family memb 96.0 0.0034 1.2E-07 56.1 3.2 22 67-88 24-45 (260)
369 2dby_A GTP-binding protein; GD 96.0 0.0026 9E-08 60.6 2.5 22 67-88 3-24 (368)
370 1ko7_A HPR kinase/phosphatase; 96.0 0.0051 1.7E-07 57.2 4.4 35 52-87 132-166 (314)
371 1r8s_A ADP-ribosylation factor 96.0 0.0033 1.1E-07 51.3 2.7 21 67-87 2-22 (164)
372 3be4_A Adenylate kinase; malar 96.0 0.0038 1.3E-07 54.4 3.3 24 64-87 4-27 (217)
373 1e4v_A Adenylate kinase; trans 96.0 0.0035 1.2E-07 54.5 3.0 21 67-87 2-22 (214)
374 1ksh_A ARF-like protein 2; sma 96.0 0.0041 1.4E-07 52.1 3.4 23 66-88 19-41 (186)
375 3con_A GTPase NRAS; structural 95.9 0.0033 1.1E-07 52.9 2.7 22 67-88 23-44 (190)
376 1z0f_A RAB14, member RAS oncog 95.9 0.0034 1.2E-07 51.9 2.7 22 67-88 17-38 (179)
377 2a9k_A RAS-related protein RAL 95.9 0.0034 1.2E-07 52.3 2.7 22 67-88 20-41 (187)
378 2y8e_A RAB-protein 6, GH09086P 95.9 0.0031 1.1E-07 52.1 2.4 22 67-88 16-37 (179)
379 3a1s_A Iron(II) transport prot 95.9 0.0042 1.4E-07 56.0 3.5 23 67-89 7-29 (258)
380 2g6b_A RAS-related protein RAB 95.9 0.0035 1.2E-07 52.1 2.7 22 67-88 12-33 (180)
381 4dhe_A Probable GTP-binding pr 95.9 0.0024 8.1E-08 55.4 1.6 23 66-88 30-52 (223)
382 1jbk_A CLPB protein; beta barr 95.9 0.0053 1.8E-07 51.1 3.7 25 64-88 42-66 (195)
383 1nrj_B SR-beta, signal recogni 95.9 0.0037 1.2E-07 54.0 2.7 23 67-89 14-36 (218)
384 3i8s_A Ferrous iron transport 95.9 0.0042 1.4E-07 56.5 3.2 22 67-88 5-26 (274)
385 2efe_B Small GTP-binding prote 95.9 0.0039 1.3E-07 51.8 2.8 22 67-88 14-35 (181)
386 2il1_A RAB12; G-protein, GDP, 95.8 0.0047 1.6E-07 52.4 3.3 22 67-88 28-49 (192)
387 4edh_A DTMP kinase, thymidylat 95.8 0.0044 1.5E-07 54.3 3.2 26 64-89 5-30 (213)
388 1njg_A DNA polymerase III subu 95.8 0.001 3.5E-08 57.7 -1.0 45 190-237 125-169 (250)
389 1ltq_A Polynucleotide kinase; 95.8 0.0045 1.5E-07 56.6 3.3 22 66-87 3-24 (301)
390 2h57_A ADP-ribosylation factor 95.8 0.0037 1.3E-07 52.7 2.6 22 67-88 23-44 (190)
391 2bme_A RAB4A, RAS-related prot 95.8 0.0036 1.2E-07 52.3 2.4 22 67-88 12-33 (186)
392 1zbd_A Rabphilin-3A; G protein 95.8 0.0052 1.8E-07 52.3 3.4 22 67-88 10-31 (203)
393 4bas_A ADP-ribosylation factor 95.8 0.0051 1.7E-07 52.0 3.4 22 67-88 19-40 (199)
394 1ak2_A Adenylate kinase isoenz 95.8 0.0057 1.9E-07 53.9 3.8 24 64-87 15-38 (233)
395 1vg8_A RAS-related protein RAB 95.8 0.0041 1.4E-07 53.0 2.8 22 67-88 10-31 (207)
396 3lv8_A DTMP kinase, thymidylat 95.8 0.0051 1.7E-07 54.9 3.4 26 64-89 26-51 (236)
397 2qu8_A Putative nucleolar GTP- 95.8 0.0051 1.7E-07 53.8 3.4 22 67-88 31-52 (228)
398 3tkl_A RAS-related protein RAB 95.8 0.0041 1.4E-07 52.4 2.7 22 67-88 18-39 (196)
399 3kkq_A RAS-related protein M-R 95.8 0.0042 1.4E-07 51.8 2.7 22 67-88 20-41 (183)
400 2gf9_A RAS-related protein RAB 95.8 0.0042 1.4E-07 52.3 2.7 22 67-88 24-45 (189)
401 1m7b_A RND3/RHOE small GTP-bin 95.8 0.0038 1.3E-07 52.4 2.4 22 67-88 9-30 (184)
402 2bov_A RAla, RAS-related prote 95.8 0.0042 1.4E-07 52.8 2.7 22 67-88 16-37 (206)
403 3d3q_A TRNA delta(2)-isopenten 95.8 0.0048 1.6E-07 58.0 3.3 22 67-88 9-30 (340)
404 3zvl_A Bifunctional polynucleo 95.8 0.0054 1.8E-07 59.3 3.7 28 60-87 253-280 (416)
405 1zj6_A ADP-ribosylation factor 95.8 0.0051 1.7E-07 51.7 3.1 22 67-88 18-39 (187)
406 1jwy_B Dynamin A GTPase domain 95.8 0.0047 1.6E-07 56.8 3.1 23 67-89 26-48 (315)
407 2o52_A RAS-related protein RAB 95.7 0.0051 1.8E-07 52.5 3.1 22 67-88 27-48 (200)
408 2fg5_A RAB-22B, RAS-related pr 95.7 0.0041 1.4E-07 52.7 2.5 22 67-88 25-46 (192)
409 2cjw_A GTP-binding protein GEM 95.7 0.0045 1.5E-07 52.7 2.7 21 67-87 8-28 (192)
410 4tmk_A Protein (thymidylate ki 95.7 0.0059 2E-07 53.6 3.5 26 64-89 2-27 (213)
411 1mh1_A RAC1; GTP-binding, GTPa 95.7 0.0046 1.6E-07 51.5 2.7 22 67-88 7-28 (186)
412 2gf0_A GTP-binding protein DI- 95.7 0.0042 1.4E-07 52.5 2.5 22 67-88 10-31 (199)
413 2wsm_A Hydrogenase expression/ 95.7 0.0042 1.5E-07 53.8 2.5 22 67-88 32-53 (221)
414 2h17_A ADP-ribosylation factor 95.7 0.0048 1.6E-07 51.7 2.7 22 67-88 23-44 (181)
415 1z06_A RAS-related protein RAB 95.7 0.005 1.7E-07 51.9 2.8 22 67-88 22-43 (189)
416 1sky_E F1-ATPase, F1-ATP synth 95.7 0.0058 2E-07 59.9 3.5 37 52-89 139-175 (473)
417 2h92_A Cytidylate kinase; ross 95.7 0.0054 1.9E-07 53.2 3.1 24 65-88 3-26 (219)
418 3oes_A GTPase rhebl1; small GT 95.7 0.0044 1.5E-07 52.9 2.4 22 67-88 26-47 (201)
419 3cnl_A YLQF, putative uncharac 95.7 0.0062 2.1E-07 55.1 3.5 25 66-90 100-124 (262)
420 2a5j_A RAS-related protein RAB 95.7 0.005 1.7E-07 52.0 2.7 22 67-88 23-44 (191)
421 2f7s_A C25KG, RAS-related prot 95.7 0.0065 2.2E-07 52.3 3.5 22 67-88 27-48 (217)
422 3dz8_A RAS-related protein RAB 95.6 0.0046 1.6E-07 52.3 2.4 22 67-88 25-46 (191)
423 1sxj_D Activator 1 41 kDa subu 95.6 0.0021 7.1E-08 59.9 0.2 43 191-236 133-175 (353)
424 2q3h_A RAS homolog gene family 95.6 0.0069 2.3E-07 51.5 3.4 22 67-88 22-43 (201)
425 3reg_A RHO-like small GTPase; 95.6 0.0053 1.8E-07 51.9 2.7 22 67-88 25-46 (194)
426 2ew1_A RAS-related protein RAB 95.6 0.0048 1.6E-07 53.1 2.4 22 67-88 28-49 (201)
427 1zd9_A ADP-ribosylation factor 95.6 0.0055 1.9E-07 51.7 2.7 22 67-88 24-45 (188)
428 2qmh_A HPR kinase/phosphorylas 95.6 0.0086 2.9E-07 52.0 3.9 35 52-87 22-56 (205)
429 3tmk_A Thymidylate kinase; pho 95.6 0.007 2.4E-07 53.2 3.4 27 63-89 3-29 (216)
430 3llu_A RAS-related GTP-binding 95.6 0.0063 2.2E-07 51.7 3.1 23 67-89 22-44 (196)
431 3t5g_A GTP-binding protein RHE 95.6 0.0062 2.1E-07 50.6 3.0 21 67-87 8-28 (181)
432 2j1l_A RHO-related GTP-binding 95.6 0.0065 2.2E-07 52.5 3.2 22 67-88 36-57 (214)
433 1x3s_A RAS-related protein RAB 95.6 0.0057 2E-07 51.4 2.7 22 67-88 17-38 (195)
434 2p5s_A RAS and EF-hand domain 95.6 0.0058 2E-07 52.1 2.7 22 67-88 30-51 (199)
435 2atv_A RERG, RAS-like estrogen 95.6 0.0059 2E-07 51.8 2.8 22 67-88 30-51 (196)
436 3def_A T7I23.11 protein; chlor 95.5 0.0065 2.2E-07 54.6 3.2 22 67-88 38-59 (262)
437 3crm_A TRNA delta(2)-isopenten 95.5 0.0068 2.3E-07 56.6 3.3 22 67-88 7-28 (323)
438 2p65_A Hypothetical protein PF 95.5 0.0064 2.2E-07 50.5 2.9 25 64-88 42-66 (187)
439 3cph_A RAS-related protein SEC 95.5 0.006 2E-07 52.2 2.7 22 67-88 22-43 (213)
440 1h65_A Chloroplast outer envel 95.5 0.0066 2.3E-07 54.8 3.1 22 67-88 41-62 (270)
441 3ld9_A DTMP kinase, thymidylat 95.5 0.007 2.4E-07 53.5 3.2 27 63-89 19-45 (223)
442 3bwd_D RAC-like GTP-binding pr 95.5 0.0072 2.5E-07 50.2 3.1 22 67-88 10-31 (182)
443 2bcg_Y Protein YP2, GTP-bindin 95.5 0.0054 1.9E-07 52.4 2.4 22 67-88 10-31 (206)
444 1ypw_A Transitional endoplasmi 95.5 0.002 7E-08 67.6 -0.4 32 58-89 504-535 (806)
445 2ocp_A DGK, deoxyguanosine kin 95.5 0.0065 2.2E-07 53.8 3.0 24 65-88 2-25 (241)
446 2iwr_A Centaurin gamma 1; ANK 95.5 0.0048 1.6E-07 51.2 1.9 22 67-88 9-30 (178)
447 2b6h_A ADP-ribosylation factor 95.5 0.0068 2.3E-07 51.4 2.9 21 67-87 31-51 (192)
448 2aka_B Dynamin-1; fusion prote 95.5 0.0064 2.2E-07 55.3 2.9 23 67-89 28-50 (299)
449 2fu5_C RAS-related protein RAB 95.5 0.0048 1.6E-07 51.5 1.9 22 67-88 10-31 (183)
450 2fv8_A H6, RHO-related GTP-bin 95.5 0.0059 2E-07 52.4 2.5 22 67-88 27-48 (207)
451 3a8t_A Adenylate isopentenyltr 95.4 0.0073 2.5E-07 56.7 3.2 26 64-89 39-64 (339)
452 1gwn_A RHO-related GTP-binding 95.4 0.0059 2E-07 52.7 2.4 22 67-88 30-51 (205)
453 3c5c_A RAS-like protein 12; GD 95.4 0.0068 2.3E-07 51.2 2.8 22 67-88 23-44 (187)
454 3exa_A TRNA delta(2)-isopenten 95.4 0.0076 2.6E-07 56.0 3.2 24 65-88 3-26 (322)
455 2g3y_A GTP-binding protein GEM 95.4 0.0089 3E-07 52.1 3.5 22 67-88 39-60 (211)
456 3umf_A Adenylate kinase; rossm 95.4 0.0058 2E-07 53.8 2.2 27 61-87 25-51 (217)
457 2fh5_B SR-beta, signal recogni 95.4 0.0069 2.4E-07 52.1 2.7 22 67-88 9-30 (214)
458 4djt_A GTP-binding nuclear pro 95.4 0.0043 1.5E-07 53.6 1.3 22 67-88 13-34 (218)
459 2qz4_A Paraplegin; AAA+, SPG7, 95.4 0.0096 3.3E-07 52.9 3.6 26 63-88 37-62 (262)
460 1p5z_B DCK, deoxycytidine kina 95.3 0.0056 1.9E-07 55.0 1.9 27 63-89 22-48 (263)
461 2gco_A H9, RHO-related GTP-bin 95.3 0.007 2.4E-07 51.7 2.4 22 67-88 27-48 (201)
462 4dcu_A GTP-binding protein ENG 95.3 0.007 2.4E-07 59.1 2.6 22 67-88 25-46 (456)
463 2atx_A Small GTP binding prote 95.2 0.0079 2.7E-07 50.8 2.5 22 67-88 20-41 (194)
464 2r62_A Cell division protease 95.2 0.0025 8.5E-08 57.2 -0.8 30 57-88 38-67 (268)
465 2x77_A ADP-ribosylation factor 95.2 0.007 2.4E-07 50.9 2.0 21 67-87 24-44 (189)
466 2hf9_A Probable hydrogenase ni 95.2 0.0098 3.3E-07 51.6 3.0 22 67-88 40-61 (226)
467 3foz_A TRNA delta(2)-isopenten 95.1 0.011 3.9E-07 54.8 3.3 23 66-88 11-33 (316)
468 3sr0_A Adenylate kinase; phosp 95.1 0.012 4E-07 51.3 3.3 21 67-87 2-22 (206)
469 2yc2_C IFT27, small RAB-relate 95.1 0.0048 1.6E-07 52.5 0.6 22 67-88 22-43 (208)
470 2hup_A RAS-related protein RAB 95.0 0.0096 3.3E-07 50.9 2.5 22 67-88 31-52 (201)
471 4gzl_A RAS-related C3 botulinu 95.0 0.01 3.4E-07 50.9 2.4 21 67-87 32-52 (204)
472 4hlc_A DTMP kinase, thymidylat 95.0 0.013 4.4E-07 50.9 3.1 25 65-89 2-26 (205)
473 3tqf_A HPR(Ser) kinase; transf 95.0 0.018 6.1E-07 48.8 3.8 34 52-86 4-37 (181)
474 3cpj_B GTP-binding protein YPT 95.0 0.011 3.9E-07 51.2 2.8 22 67-88 15-36 (223)
475 2orw_A Thymidine kinase; TMTK, 94.9 0.015 5.1E-07 49.6 3.4 53 190-248 75-137 (184)
476 3q3j_B RHO-related GTP-binding 94.9 0.012 4E-07 51.0 2.7 22 67-88 29-50 (214)
477 3n70_A Transport activator; si 94.9 0.014 4.6E-07 47.5 2.9 25 64-88 23-47 (145)
478 2v3c_C SRP54, signal recogniti 94.8 0.0068 2.3E-07 58.9 1.0 31 60-90 92-124 (432)
479 2chg_A Replication factor C sm 94.7 0.016 5.5E-07 49.3 3.0 43 190-235 101-143 (226)
480 1puj_A YLQF, conserved hypothe 94.7 0.016 5.4E-07 53.0 3.1 24 66-89 121-144 (282)
481 2j0v_A RAC-like GTP-binding pr 94.7 0.013 4.5E-07 50.2 2.4 22 67-88 11-32 (212)
482 1wxq_A GTP-binding protein; st 94.6 0.017 5.8E-07 55.5 3.2 41 155-197 181-221 (397)
483 3gmt_A Adenylate kinase; ssgci 94.5 0.02 7E-07 50.7 3.3 22 66-87 9-30 (230)
484 3syl_A Protein CBBX; photosynt 94.5 0.02 7E-07 52.2 3.5 25 64-88 66-90 (309)
485 3eph_A TRNA isopentenyltransfe 94.4 0.018 6.2E-07 55.3 2.9 22 66-87 3-24 (409)
486 3p32_A Probable GTPase RV1496/ 94.4 0.021 7.3E-07 53.7 3.3 25 65-89 79-103 (355)
487 3l0i_B RAS-related protein RAB 94.4 0.0051 1.7E-07 52.4 -1.0 22 67-88 35-56 (199)
488 2hjg_A GTP-binding protein ENG 94.4 0.018 6E-07 55.9 2.7 22 67-88 5-26 (436)
489 3gj0_A GTP-binding nuclear pro 94.3 0.014 4.7E-07 50.5 1.6 21 67-87 17-38 (221)
490 3th5_A RAS-related C3 botulinu 93.3 0.0078 2.7E-07 51.4 0.0 21 67-87 32-52 (204)
491 1d2n_A N-ethylmaleimide-sensit 94.3 0.022 7.6E-07 51.1 3.0 24 64-87 63-86 (272)
492 2x2e_A Dynamin-1; nitration, h 94.3 0.016 5.5E-07 54.5 2.1 23 67-89 33-55 (353)
493 2qgz_A Helicase loader, putati 94.3 0.028 9.5E-07 51.9 3.7 24 65-88 152-175 (308)
494 2orv_A Thymidine kinase; TP4A 94.2 0.31 1.1E-05 43.1 10.2 52 190-248 89-150 (234)
495 1xwi_A SKD1 protein; VPS4B, AA 94.2 0.027 9.2E-07 52.3 3.4 26 63-88 43-68 (322)
496 3r7w_A Gtpase1, GTP-binding pr 94.1 0.023 7.8E-07 52.4 2.8 23 66-88 4-26 (307)
497 1ofh_A ATP-dependent HSL prote 94.1 0.026 9E-07 51.2 3.2 25 65-89 50-74 (310)
498 3hws_A ATP-dependent CLP prote 94.1 0.026 8.8E-07 53.1 3.2 26 64-89 50-75 (363)
499 3ec1_A YQEH GTPase; atnos1, at 94.0 0.021 7.3E-07 54.2 2.5 25 64-88 161-185 (369)
500 3t15_A Ribulose bisphosphate c 94.0 0.028 9.7E-07 51.4 3.2 23 66-88 37-59 (293)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=9.6e-54 Score=409.51 Aligned_cols=229 Identities=21% Similarity=0.257 Sum_probs=189.8
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++|+++||+|+|+... +...+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++....
T Consensus 22 ~~mi~v~~ls~~y~~~~-----~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~ 96 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGT-----RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLS 96 (366)
T ss_dssp -CCEEEEEEEEEEECSS-----SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCC
T ss_pred CceEEEEeEEEEeCCCC-----CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC
Confidence 46899999999996310 1356999999999999999999999999999999999999999999999998764211
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
.. . ...+++.++|++|...++..+++.+++ ++ ..+... +++.++++.+++. .++++.+|||||
T Consensus 97 ~~----~----~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGq 168 (366)
T 3tui_C 97 ES----E----LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQ 168 (366)
T ss_dssp HH----H----HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHH
T ss_pred HH----H----HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHH
Confidence 10 0 012345688887776666666665433 32 123332 3567889999986 478899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||+||||++++..+||||++|++|++++.|++
T Consensus 169 kQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~ 248 (366)
T 3tui_C 169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTV 248 (366)
T ss_dssp HHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999999999999877799999999999999999999999999999999999
Q ss_pred hHHHHhhhhhh
Q 018938 259 DKVKEASKLSL 269 (348)
Q Consensus 259 ~~~~~~~~~~~ 269 (348)
++++..+....
T Consensus 249 ~ev~~~p~~~~ 259 (366)
T 3tui_C 249 SEVFSHPKTPL 259 (366)
T ss_dssp HHHHSSCCSHH
T ss_pred HHHHhCCCcHH
Confidence 99987655443
No 2
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=8.1e-54 Score=397.57 Aligned_cols=221 Identities=22% Similarity=0.287 Sum_probs=181.1
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++|+++||+|+|++ ...+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....
T Consensus 5 ~~~l~i~~ls~~y~~--------~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~ 76 (275)
T 3gfo_A 5 DYILKVEELNYNYSD--------GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSR 76 (275)
T ss_dssp CEEEEEEEEEEECTT--------SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSH
T ss_pred CcEEEEEEEEEEECC--------CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCccc
Confidence 458999999999952 356999999999999999999999999999999999999999999999998752100
Q ss_pred cccccCcccccchhhhhhhhhcCCCcc-ccccchHHH-HHhcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVP-IQMDVSAEK-MIFGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDG 177 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgG 177 (348)
.....+++.++|++|... .....++.+ +.++. .+... +++.++++.+++. .++++.+||||
T Consensus 77 ---------~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG 147 (275)
T 3gfo_A 77 ---------KGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFG 147 (275)
T ss_dssp ---------HHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHH
T ss_pred ---------ccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHH
Confidence 001134566777766532 122344443 33322 22232 3567789999986 46789999999
Q ss_pred HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
|||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||+||||++++..+||+|++|++|++++.|+
T Consensus 148 qkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~ 227 (275)
T 3gfo_A 148 QKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227 (275)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999974449999999999999999999999999999999999
Q ss_pred hhHHHHhh
Q 018938 258 MDKVKEAS 265 (348)
Q Consensus 258 ~~~~~~~~ 265 (348)
++++....
T Consensus 228 ~~~~~~~~ 235 (275)
T 3gfo_A 228 PKEVFAEK 235 (275)
T ss_dssp HHHHTHHH
T ss_pred HHHHhcCH
Confidence 99987643
No 3
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3e-53 Score=392.26 Aligned_cols=216 Identities=25% Similarity=0.332 Sum_probs=182.5
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++|+++||++.|+ ++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....
T Consensus 9 ~~~l~~~~l~~~~~---------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 79 (266)
T 4g1u_C 9 VALLEASHLHYHVQ---------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQ 79 (266)
T ss_dssp CCEEEEEEEEEEET---------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSC
T ss_pred cceEEEEeEEEEeC---------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCC
Confidence 36899999999994 468999999999999999999999999999999999999999999999998753211
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC--C--CCHHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA--G--IDPQRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~--~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
...+++.++|+++.......+++.+++ ++.. . ...+++.++++.+++. .++++.+|||||||
T Consensus 80 -----------~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~Q 148 (266)
T 4g1u_C 80 -----------PKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQ 148 (266)
T ss_dssp -----------HHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHH
T ss_pred -----------HHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHH
Confidence 112344567776655554555665543 3321 1 1235677889999986 46789999999999
Q ss_pred HHHHHHHHcc------CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938 181 RVQICMGLLK------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 254 (348)
Q Consensus 181 Rv~lAraL~~------~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 254 (348)
||+|||||++ +|++|||||||+|||+.++..++++|++++++.++|||+||||++++..+||||++|++|++++
T Consensus 149 Rv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~ 228 (266)
T 4g1u_C 149 RVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVA 228 (266)
T ss_dssp HHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999 9999999999999999999999999999987767899999999999999999999999999999
Q ss_pred ecChhHHHH
Q 018938 255 AMPMDKVKE 263 (348)
Q Consensus 255 ~g~~~~~~~ 263 (348)
.|+++++..
T Consensus 229 ~g~~~~~~~ 237 (266)
T 4g1u_C 229 CGTPEEVLN 237 (266)
T ss_dssp EECHHHHCC
T ss_pred EcCHHHHhC
Confidence 999998865
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5.3e-53 Score=404.07 Aligned_cols=219 Identities=20% Similarity=0.357 Sum_probs=186.2
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+|+|+ +..+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.....
T Consensus 4 ~l~i~~ls~~y~---------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~- 73 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNT- 73 (359)
T ss_dssp CEEEEEEEEEET---------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSC-
T ss_pred EEEEEeEEEEEC---------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECccccc-
Confidence 699999999994 4789999999999999999999999999999999999999999999999987632111
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccC--CCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVA--GID----PQRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
.. ...++.++|++|+..+++.+++.++ .++.. +.. .+++.++++.+++. .++++.+|||||||
T Consensus 74 ----~~----~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~Q 145 (359)
T 3fvq_A 74 ----NL----PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQ 145 (359)
T ss_dssp ----BC----CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHH
T ss_pred ----cc----chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHH
Confidence 00 1123567787777666666676654 34432 111 24567889999986 47889999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
||+|||||+.+|++|||||||++||+..+..+++.|.++.++.|.|||+||||++++..+||||++|++|+|+..|++++
T Consensus 146 RValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~e 225 (359)
T 3fvq_A 146 RAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHE 225 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999999999988877789999999999999999999999999999999999999
Q ss_pred HHHhhh
Q 018938 261 VKEASK 266 (348)
Q Consensus 261 ~~~~~~ 266 (348)
+...+.
T Consensus 226 l~~~p~ 231 (359)
T 3fvq_A 226 LYRQPA 231 (359)
T ss_dssp HHHSCS
T ss_pred HHhCcc
Confidence 887543
No 5
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.4e-52 Score=403.84 Aligned_cols=216 Identities=23% Similarity=0.321 Sum_probs=185.7
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+|+|+ +..+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.....
T Consensus 3 ~l~~~~l~~~yg---------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~- 72 (381)
T 3rlf_A 3 SVQLQNVTKAWG---------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP- 72 (381)
T ss_dssp CEEEEEEEEEET---------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG-
T ss_pred EEEEEeEEEEEC---------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH-
Confidence 599999999994 4689999999999999999999999999999999999999999999999987632111
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
.++.++|++|+..+++.+++.+++ ++. .+... +++.++++.+++. .++++.+|||||||
T Consensus 73 ------------~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQ 140 (381)
T 3rlf_A 73 ------------AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQ 140 (381)
T ss_dssp ------------GGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHH
T ss_pred ------------HHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHH
Confidence 124567777766666666665543 322 23332 4567889999986 47889999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|+|+||||++++..+||||++|++|+++..|++++
T Consensus 141 RVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~ 220 (381)
T 3rlf_A 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220 (381)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999999999999987779999999999999999999999999999999999999
Q ss_pred HHHhhhh
Q 018938 261 VKEASKL 267 (348)
Q Consensus 261 ~~~~~~~ 267 (348)
+...+..
T Consensus 221 l~~~p~~ 227 (381)
T 3rlf_A 221 LYHYPAD 227 (381)
T ss_dssp HHHCCSB
T ss_pred HHhCCcc
Confidence 9876543
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.4e-52 Score=385.42 Aligned_cols=218 Identities=18% Similarity=0.264 Sum_probs=181.6
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|+ ++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++. ...
T Consensus 23 ~~l~i~~l~~~y~---------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~-~~~ 92 (263)
T 2olj_A 23 QMIDVHQLKKSFG---------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK-AKD 92 (263)
T ss_dssp CSEEEEEEEEEET---------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS-STT
T ss_pred heEEEEeEEEEEC---------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC-Ccc
Confidence 4799999999994 467999999999999999999999999999999999999999999999998652 100
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc---cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG---VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
.. ...+++.++|+++...++..+++.+.+ ++ ..+.. .+++.++++.+++. .++++.+|||||
T Consensus 93 ----~~----~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq 164 (263)
T 2olj_A 93 ----TN----LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQ 164 (263)
T ss_dssp ----CC----HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHH
T ss_pred ----cc----HHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHH
Confidence 00 112345678887765555555555433 32 12222 23466789999985 467899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+|||+||||++++..+||++++|++|++++.|++
T Consensus 165 kQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 243 (263)
T 2olj_A 165 AQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKP 243 (263)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999765 99999999999999999999999999999999999
Q ss_pred hHHHHhh
Q 018938 259 DKVKEAS 265 (348)
Q Consensus 259 ~~~~~~~ 265 (348)
+++....
T Consensus 244 ~~~~~~~ 250 (263)
T 2olj_A 244 EDLFDRP 250 (263)
T ss_dssp HHHHHSC
T ss_pred HHHHhCc
Confidence 9887543
No 7
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.5e-52 Score=386.06 Aligned_cols=213 Identities=15% Similarity=0.241 Sum_probs=178.2
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++|+++||+++|+ ++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....
T Consensus 5 ~~~l~i~~l~~~y~---------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~ 75 (257)
T 1g6h_A 5 MEILRTENIVKYFG---------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE 75 (257)
T ss_dssp CEEEEEEEEEEEET---------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC
T ss_pred CcEEEEeeeEEEEC---------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC
Confidence 45799999999994 467999999999999999999999999999999999999999999999998652210
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC----C-----------CC----HHHHHHHHHHcCCC-
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA----G-----------ID----PQRRAELIKVLDID- 166 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~-----------~~----~~~~~~~l~~l~l~- 166 (348)
. ...+++.++|++++..++..+++.+.+ ++.. + .. .+++.++++.+++.
T Consensus 76 ~----------~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 145 (257)
T 1g6h_A 76 P----------AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH 145 (257)
T ss_dssp H----------HHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG
T ss_pred H----------HHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCch
Confidence 0 012344577877766555555665543 3211 1 11 23456788999986
Q ss_pred -cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEE
Q 018938 167 -LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV 245 (348)
Q Consensus 167 -~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~ 245 (348)
.++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+|||+||||++++..+||+++
T Consensus 146 ~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~ 224 (257)
T 1g6h_A 146 LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLY 224 (257)
T ss_dssp GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEE
T ss_pred hhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEE
Confidence 46789999999999999999999999999999999999999999999999998755 9999999999999999999999
Q ss_pred EEcCCEEeeecChhH
Q 018938 246 YVAHGKLQLAMPMDK 260 (348)
Q Consensus 246 ~l~~G~i~~~g~~~~ 260 (348)
+|++|++++.|++++
T Consensus 225 ~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 225 VMFNGQIIAEGRGEE 239 (257)
T ss_dssp EEETTEEEEEEESHH
T ss_pred EEECCEEEEEeCHHH
Confidence 999999999998887
No 8
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.1e-52 Score=380.19 Aligned_cols=220 Identities=20% Similarity=0.311 Sum_probs=174.7
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+|+|++.. ...++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++......
T Consensus 1 ~l~~~~l~~~y~~~~-----~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~ 75 (235)
T 3tif_A 1 MVKLKNVTKTYKMGE-----EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDD 75 (235)
T ss_dssp CEEEEEEEEEEEETT-----EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH
T ss_pred CEEEEEEEEEeCCCC-----cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHH
Confidence 489999999996310 124699999999999999999999999999999999999999999999999875321110
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--C---CCCH----HHHHHHHHHcCCC--c-CccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--A---GIDP----QRRAELIKVLDID--L-SWRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~---~~~~----~~~~~~l~~l~l~--~-~~~~~~LSg 176 (348)
. .....++.++|++|...++..+++.+.+ ++. . .... +++.++++.+++. . ++++.+|||
T Consensus 76 ----~---~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 148 (235)
T 3tif_A 76 ----E---LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSG 148 (235)
T ss_dssp ----H---HHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCH
T ss_pred ----H---HHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCH
Confidence 0 0011234578887776666665655433 221 1 2222 3456778888885 2 678999999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||+||||++.+ .+||+|++|++|++++.+
T Consensus 149 Gq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~ 227 (235)
T 3tif_A 149 GQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREE 227 (235)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999999999999999999766699999999999965 789999999999999998
Q ss_pred ChhHHH
Q 018938 257 PMDKVK 262 (348)
Q Consensus 257 ~~~~~~ 262 (348)
+++++.
T Consensus 228 ~~~~~~ 233 (235)
T 3tif_A 228 KLRGFD 233 (235)
T ss_dssp ECC---
T ss_pred Chhhhc
Confidence 877654
No 9
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=8.6e-52 Score=381.90 Aligned_cols=227 Identities=22% Similarity=0.264 Sum_probs=181.7
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|+ ++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....
T Consensus 5 ~~l~i~~l~~~y~---------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~ 75 (262)
T 1b0u_A 5 NKLHVIDLHKRYG---------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRD 75 (262)
T ss_dssp CCEEEEEEEEEET---------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEEC
T ss_pred ceEEEeeEEEEEC---------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccc
Confidence 4799999999994 4679999999999999999999999999999999999999999999999986531000
Q ss_pred cccc-Ccccc-cchhhhhhhhhcCCCccccccchHHHHH-hc---cCCCC----HHHHHHHHHHcCCC---cCccCCCCC
Q 018938 109 LTSS-GDLSY-LGGEWRREVAFAGFEVPIQMDVSAEKMI-FG---VAGID----PQRRAELIKVLDID---LSWRMHKVS 175 (348)
Q Consensus 109 ~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~----~~~~~~~l~~l~l~---~~~~~~~LS 175 (348)
.... ..... ....+++.++|+++...++..+++.+.+ ++ ..+.. .+++.++++.+++. .++++.+||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LS 155 (262)
T 1b0u_A 76 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLS 155 (262)
T ss_dssp TTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSC
T ss_pred ccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCC
Confidence 0000 00000 0012345678887765555555655433 21 12222 23466789999985 367899999
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
|||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+|||+||||++++..+||++++|++|++++.
T Consensus 156 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (262)
T 1b0u_A 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 234 (262)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999765 99999999999999999999999999999999
Q ss_pred cChhHHHHhh
Q 018938 256 MPMDKVKEAS 265 (348)
Q Consensus 256 g~~~~~~~~~ 265 (348)
|+++++....
T Consensus 235 g~~~~~~~~~ 244 (262)
T 1b0u_A 235 GDPEQVFGNP 244 (262)
T ss_dssp ECHHHHHHSC
T ss_pred CCHHHHHhCc
Confidence 9999887643
No 10
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-51 Score=394.89 Aligned_cols=215 Identities=25% Similarity=0.288 Sum_probs=184.3
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+|+|+ ++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++....
T Consensus 3 ~l~~~~l~~~y~---------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-- 71 (359)
T 2yyz_A 3 SIRVVNLKKYFG---------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP-- 71 (359)
T ss_dssp CEEEEEEEEEET---------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--
T ss_pred EEEEEEEEEEEC---------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCC--
Confidence 599999999994 467999999999999999999999999999999999999999999999998753211
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC--CCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA--GID----PQRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
..++.++|++|+..++..+++.+++ ++.. +.. .+++.++++.+++. .++++.+|||||||
T Consensus 72 -----------~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~Q 140 (359)
T 2yyz_A 72 -----------PKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQ 140 (359)
T ss_dssp -----------GGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHH
T ss_pred -----------hhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHH
Confidence 1134577777766666666665543 4332 222 23567889999986 47889999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|++++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~ 220 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDE 220 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987779999999999999999999999999999999999999
Q ss_pred HHHhhh
Q 018938 261 VKEASK 266 (348)
Q Consensus 261 ~~~~~~ 266 (348)
+...+.
T Consensus 221 l~~~p~ 226 (359)
T 2yyz_A 221 VYDSPK 226 (359)
T ss_dssp HHHSCS
T ss_pred HHhCcc
Confidence 876543
No 11
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-51 Score=375.90 Aligned_cols=216 Identities=19% Similarity=0.246 Sum_probs=178.0
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....
T Consensus 4 ~~~l~~~~l~~~y~---------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 74 (240)
T 1ji0_A 4 DIVLEVQSLHVYYG---------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKP 74 (240)
T ss_dssp SEEEEEEEEEEEET---------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC
T ss_pred CceEEEEeEEEEEC---------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC
Confidence 35799999999994 367999999999999999999999999999999999999999999999998653211
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc-CC--CC--HHHHHHHHHHcC-CC--cCccCCCCCHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV-AG--ID--PQRRAELIKVLD-ID--LSWRMHKVSDGQ 178 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~--~~--~~~~~~~l~~l~-l~--~~~~~~~LSgGq 178 (348)
. ....++.++|+++...++..+++.+.+ ++. .. .. .+.+.++++.++ +. .++++.+|||||
T Consensus 75 ~----------~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq 144 (240)
T 1ji0_A 75 A----------HVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGE 144 (240)
T ss_dssp H----------HHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHH
T ss_pred H----------HHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHH
Confidence 0 001123477777766555555665543 322 11 11 234567788784 63 467899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
||||+|||||+.+|++|||||||+|||+.++..++++|+++++ .|+|||+||||++++..+||++++|++|++++.|++
T Consensus 145 ~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 223 (240)
T 1ji0_A 145 QQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKA 223 (240)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999875 589999999999999999999999999999999998
Q ss_pred hHHHH
Q 018938 259 DKVKE 263 (348)
Q Consensus 259 ~~~~~ 263 (348)
+++..
T Consensus 224 ~~~~~ 228 (240)
T 1ji0_A 224 SELLD 228 (240)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 88764
No 12
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.7e-51 Score=393.62 Aligned_cols=219 Identities=23% Similarity=0.362 Sum_probs=184.4
Q ss_pred CCCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938 27 SKPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD 106 (348)
Q Consensus 27 ~~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~ 106 (348)
..++|+++||+|+|+ +++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...
T Consensus 11 ~~~~l~~~~l~~~y~--------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~ 82 (355)
T 1z47_A 11 GSMTIEFVGVEKIYP--------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDL 82 (355)
T ss_dssp CCEEEEEEEEEECCT--------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC
T ss_pred CCceEEEEEEEEEEc--------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcC
Confidence 456899999999993 135799999999999999999999999999999999999999999999999875321
Q ss_pred ccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHH
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDG 177 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgG 177 (348)
. ..++.++|++|+..++..+++.+++ ++. .+.. .+++.++++.+++. .++++.+||||
T Consensus 83 ~-------------~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGG 149 (355)
T 1z47_A 83 P-------------PQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGG 149 (355)
T ss_dssp C-------------GGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHH
T ss_pred C-------------hhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHH
Confidence 1 1234566766665555566665433 322 2223 23567889999986 47889999999
Q ss_pred HHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 178 QRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 178 qrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
|||||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|||+||||++++..+||+|++|++|+++..|+
T Consensus 150 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~ 229 (355)
T 1z47_A 150 QQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGT 229 (355)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999987779999999999999999999999999999999999
Q ss_pred hhHHHHhhh
Q 018938 258 MDKVKEASK 266 (348)
Q Consensus 258 ~~~~~~~~~ 266 (348)
++++...+.
T Consensus 230 ~~~l~~~p~ 238 (355)
T 1z47_A 230 PEEVYEKPG 238 (355)
T ss_dssp HHHHHHSCS
T ss_pred HHHHHhCcc
Confidence 999876543
No 13
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-51 Score=378.49 Aligned_cols=213 Identities=22% Similarity=0.337 Sum_probs=179.3
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...
T Consensus 14 ~~l~i~~l~~~y~---------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~-- 82 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-- 82 (256)
T ss_dssp CCEEEEEEEEEET---------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC--
T ss_pred CeEEEEEEEEEEC---------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcc--
Confidence 5799999999994 46799999999999999999999999999999999999999999999999865321
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cCCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VAGIDP----QRRAELIKVLDID--LSWRMHKVSDGQR 179 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqr 179 (348)
...+++.++|+++...++..+++.+.+ +. ..+... +++.++++.+++. .++++.+||||||
T Consensus 83 ----------~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~ 152 (256)
T 1vpl_A 83 ----------PHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMV 152 (256)
T ss_dssp ----------HHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHH
T ss_pred ----------HHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHH
Confidence 012345577776665555555555433 21 112222 3466788999986 4678999999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChh
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 259 (348)
|||+|||||+.+|++|||||||+|||+.++..++++|+++.+ .|.|||+||||++++..+||++++|++|++++.|+++
T Consensus 153 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 231 (256)
T 1vpl_A 153 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVE 231 (256)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999865 4899999999999999999999999999999999998
Q ss_pred HHHH
Q 018938 260 KVKE 263 (348)
Q Consensus 260 ~~~~ 263 (348)
++.+
T Consensus 232 ~~~~ 235 (256)
T 1vpl_A 232 ELKE 235 (256)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 14
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=8.3e-52 Score=373.62 Aligned_cols=210 Identities=20% Similarity=0.256 Sum_probs=172.6
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....
T Consensus 3 ~~l~~~~l~~~y~---------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 73 (224)
T 2pcj_A 3 EILRAENIKKVIR---------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNE 73 (224)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCH
T ss_pred cEEEEEeEEEEEC---------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCH
Confidence 4799999999994 4679999999999999999999999999999999999999999999999986532110
Q ss_pred ccccCcccccchhhh-hhhhhcCCCccccccchHHHHH-hc--cCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 109 LTSSGDLSYLGGEWR-REVAFAGFEVPIQMDVSAEKMI-FG--VAGID----PQRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
. . ...++ +.++|+++...++..+++.+.+ ++ ..+.. .+++.++++.+++. .++++.+|||||
T Consensus 74 ~----~----~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq 145 (224)
T 2pcj_A 74 K----E----LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGE 145 (224)
T ss_dssp H----H----HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHH
T ss_pred H----H----HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHH
Confidence 0 0 00122 4577877765555555555433 22 12222 23466788999986 467899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||+||||++++ .+||++++|++|++++.|+
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 146 QQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHERELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999999999999999999765 99999999999998 7999999999999998875
No 15
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=4e-51 Score=392.29 Aligned_cols=215 Identities=25% Similarity=0.309 Sum_probs=183.1
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+|+|+ ++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++....
T Consensus 3 ~l~~~~l~~~y~---------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-- 71 (362)
T 2it1_A 3 EIKLENIVKKFG---------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP-- 71 (362)
T ss_dssp CEEEEEEEEESS---------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--
T ss_pred EEEEEeEEEEEC---------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC--
Confidence 599999999994 467999999999999999999999999999999999999999999999998753211
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGID----PQRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
..++.++|++|+..++..+++.+++ ++. .+.. .+++.++++.+++. .++++.+|||||||
T Consensus 72 -----------~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~Q 140 (362)
T 2it1_A 72 -----------PKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQ 140 (362)
T ss_dssp -----------GGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHH
T ss_pred -----------HhHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHH
Confidence 0124567776666666666665443 332 2222 23567889999986 47889999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
||+|||||+.+|++||||||||+||+..+..+++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|++++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 220 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDE 220 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999977779999999999999999999999999999999999999
Q ss_pred HHHhhh
Q 018938 261 VKEASK 266 (348)
Q Consensus 261 ~~~~~~ 266 (348)
+...+.
T Consensus 221 ~~~~p~ 226 (362)
T 2it1_A 221 VYYKPK 226 (362)
T ss_dssp HHHSCS
T ss_pred HHhCcc
Confidence 876543
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.4e-51 Score=394.83 Aligned_cols=220 Identities=20% Similarity=0.293 Sum_probs=184.3
Q ss_pred eEEEeceEEEecCCCCCCCCCCCc--eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTP--LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~--~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
+|+++||+|+|+ ++. +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++....
T Consensus 3 ~l~i~~l~~~y~---------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~ 73 (353)
T 1oxx_K 3 RIIVKNVSKVFK---------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG 73 (353)
T ss_dssp CEEEEEEEEEEG---------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETT
T ss_pred EEEEEeEEEEEC---------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccc
Confidence 699999999994 356 999999999999999999999999999999999999999999999998753210
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC--CCC----HHHHHHHHHHcCCC--cCccCCCCCHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA--GID----PQRRAELIKVLDID--LSWRMHKVSDGQ 178 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGq 178 (348)
. .. . ...++.++|++|...++..+++.+++ ++.. +.. .+++.++++.+++. .++++.+|||||
T Consensus 74 ~------~~-~-~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq 145 (353)
T 1oxx_K 74 K------LI-V-PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQ 145 (353)
T ss_dssp E------ES-S-CGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHH
T ss_pred c------cc-C-ChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHH
Confidence 0 00 0 01234577776666666666665543 4332 223 23567889999986 478899999999
Q ss_pred HHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 179 RRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 179 rQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
||||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|++
T Consensus 146 ~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~ 225 (353)
T 1oxx_K 146 QQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKP 225 (353)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999999999999777799999999999999999999999999999999999
Q ss_pred hHHHHhhh
Q 018938 259 DKVKEASK 266 (348)
Q Consensus 259 ~~~~~~~~ 266 (348)
+++...+.
T Consensus 226 ~~l~~~p~ 233 (353)
T 1oxx_K 226 EDLYDNPV 233 (353)
T ss_dssp HHHHHSCS
T ss_pred HHHHhCcc
Confidence 99876543
No 17
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.9e-51 Score=390.69 Aligned_cols=214 Identities=23% Similarity=0.348 Sum_probs=183.5
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||+++||+|+|+ ++ +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...
T Consensus 1 ml~~~~l~~~y~---------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~--- 67 (348)
T 3d31_A 1 MIEIESLSRKWK---------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL--- 67 (348)
T ss_dssp CEEEEEEEEECS---------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTS---
T ss_pred CEEEEEEEEEEC---------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCC---
Confidence 489999999994 35 99999999999999999999999999999999999999999999999865321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC--C-CCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA--G-IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQ 183 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~ 183 (348)
...++.++|++|+..++..+++.+++ ++.. + ...+++.++++.+++. .++++.+|||||||||+
T Consensus 68 ----------~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRva 137 (348)
T 3d31_A 68 ----------SPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVA 137 (348)
T ss_dssp ----------CHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHH
T ss_pred ----------chhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHH
Confidence 01245677877766666666665443 3221 1 1236678899999986 47889999999999999
Q ss_pred HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHHH
Q 018938 184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE 263 (348)
Q Consensus 184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 263 (348)
|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|+++++..
T Consensus 138 lAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~ 217 (348)
T 3d31_A 138 LARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (348)
T ss_dssp HHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999999987779999999999999999999999999999999999999876
Q ss_pred hhh
Q 018938 264 ASK 266 (348)
Q Consensus 264 ~~~ 266 (348)
.+.
T Consensus 218 ~p~ 220 (348)
T 3d31_A 218 KPV 220 (348)
T ss_dssp SCC
T ss_pred Ccc
Confidence 543
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=3.9e-51 Score=393.72 Aligned_cols=215 Identities=22% Similarity=0.262 Sum_probs=180.1
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+|+|+ ++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++....
T Consensus 11 ~l~~~~l~~~y~---------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-- 79 (372)
T 1v43_A 11 EVKLENLTKRFG---------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-- 79 (372)
T ss_dssp CEEEEEEEEEET---------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--
T ss_pred eEEEEEEEEEEC---------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCC--
Confidence 699999999994 467999999999999999999999999999999999999999999999998753211
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC--CCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA--GIDP----QRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
..++.++|++|...++..+++.+++ ++.. +... +++.++++.+++. .++++.+|||||||
T Consensus 80 -----------~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~Q 148 (372)
T 1v43_A 80 -----------PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQ 148 (372)
T ss_dssp -----------GGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHH
T ss_pred -----------hhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHH
Confidence 1134567776666666666665543 4332 2222 3467889999986 47889999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|++++
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 228 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTE 228 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987779999999999999999999999999999999999999
Q ss_pred HHHhhh
Q 018938 261 VKEASK 266 (348)
Q Consensus 261 ~~~~~~ 266 (348)
+...+.
T Consensus 229 l~~~p~ 234 (372)
T 1v43_A 229 VYLRPN 234 (372)
T ss_dssp HHHCCS
T ss_pred HHhCcc
Confidence 876543
No 19
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=5.8e-51 Score=371.55 Aligned_cols=211 Identities=21% Similarity=0.301 Sum_probs=176.5
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||+++||+++|+ + +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|.++....
T Consensus 1 ml~~~~l~~~y~---------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-- 66 (240)
T 2onk_A 1 MFLKVRAEKRLG---------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP-- 66 (240)
T ss_dssp CCEEEEEEEEET---------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--
T ss_pred CEEEEEEEEEeC---------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--
Confidence 478999999994 2 59999999999 999999999999999999999999999999999998653210
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCC----HHHHHHHHHHcCCC--cCccCCCCCHHHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGID----PQRRAELIKVLDID--LSWRMHKVSDGQRRRV 182 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv 182 (348)
..++.++|+++...++..+++.+.+ ++..... .+++.++++.+++. .++++.+|||||||||
T Consensus 67 -----------~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv 135 (240)
T 2onk_A 67 -----------PERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRV 135 (240)
T ss_dssp -----------TTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHH
T ss_pred -----------hhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHH
Confidence 1123466776665555555665543 3321111 24567788889885 4678999999999999
Q ss_pred HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHH
Q 018938 183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 262 (348)
Q Consensus 183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 262 (348)
+|||||+.+|++|||||||+|||+.++..++++|++++++.|+|||++|||++++..+||++++|++|++++.|+++++.
T Consensus 136 ~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999987666999999999999999999999999999999999999887
Q ss_pred Hhh
Q 018938 263 EAS 265 (348)
Q Consensus 263 ~~~ 265 (348)
...
T Consensus 216 ~~~ 218 (240)
T 2onk_A 216 SAK 218 (240)
T ss_dssp HSC
T ss_pred hCc
Confidence 543
No 20
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=8e-51 Score=392.01 Aligned_cols=221 Identities=22% Similarity=0.301 Sum_probs=184.1
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+|+|+ ++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.....
T Consensus 3 ~l~~~~l~~~y~---------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~- 72 (372)
T 1g29_1 3 GVRLVDVWKVFG---------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEK- 72 (372)
T ss_dssp EEEEEEEEEEET---------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGG-
T ss_pred EEEEEeEEEEEC---------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccc-
Confidence 699999999994 4679999999999999999999999999999999999999999999999987532100
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc--CCCCH----HHHHHHHHHcCCC--cCccCCCCCHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV--AGIDP----QRRAELIKVLDID--LSWRMHKVSDGQRR 180 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~----~~~~~~l~~l~l~--~~~~~~~LSgGqrQ 180 (348)
... .. ..++.++|++|+..++..+++.+++ ++. .+... +++.++++.+++. .++++.+|||||||
T Consensus 73 ----~~~-~~-~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~Q 146 (372)
T 1g29_1 73 ----GIF-VP-PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQ 146 (372)
T ss_dssp ----TEE-CC-GGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHH
T ss_pred ----ccc-CC-HhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHH
Confidence 000 00 1134577777766666666665543 332 22222 3567889999986 47889999999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhH
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 260 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 260 (348)
||+|||||+.+|++|||||||++||+..+..+++.|+++.++.|.|+|+||||++++..+||+|++|++|+++..|++++
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999987779999999999999999999999999999999999999
Q ss_pred HHHhhh
Q 018938 261 VKEASK 266 (348)
Q Consensus 261 ~~~~~~ 266 (348)
+...+.
T Consensus 227 l~~~p~ 232 (372)
T 1g29_1 227 VYDKPA 232 (372)
T ss_dssp HHHSCS
T ss_pred HHhCcc
Confidence 876543
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=4.3e-50 Score=371.38 Aligned_cols=213 Identities=23% Similarity=0.296 Sum_probs=177.5
Q ss_pred eEEEeceEEEecCCCCCCCCCC---CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGS---TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHD 106 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~---~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~ 106 (348)
+|+++||+++|+. ++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...
T Consensus 2 ~l~~~~l~~~y~~-------~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~ 74 (266)
T 2yz2_A 2 RIEVVNVSHIFHR-------GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY 74 (266)
T ss_dssp CEEEEEEEEEEST-------TSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH
T ss_pred EEEEEEEEEEecC-------CCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH
Confidence 5899999999951 12 4699999999999999999999999999999999999999999999999764210
Q ss_pred ccccccCcccccchhhhhhhhhcCCCc-cccccchHHHHH-hccC----C-CCHHHHHHHHHHcCCC----cCccCCCCC
Q 018938 107 TALTSSGDLSYLGGEWRREVAFAGFEV-PIQMDVSAEKMI-FGVA----G-IDPQRRAELIKVLDID----LSWRMHKVS 175 (348)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~----~-~~~~~~~~~l~~l~l~----~~~~~~~LS 175 (348)
.+++.++|+++.. ......++.+.+ ++.. . ...+++.++++.+++. .++++.+||
T Consensus 75 --------------~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LS 140 (266)
T 2yz2_A 75 --------------EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLS 140 (266)
T ss_dssp --------------HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSC
T ss_pred --------------HhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCC
Confidence 2334567776653 223344554433 3211 1 1245678899999987 367899999
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
|||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |.|||+||||++++..+||++++|++|+++..
T Consensus 141 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~ 219 (266)
T 2yz2_A 141 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEKGKKVFD 219 (266)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999998765 99999999999999999999999999999999
Q ss_pred cChhHHHHh
Q 018938 256 MPMDKVKEA 264 (348)
Q Consensus 256 g~~~~~~~~ 264 (348)
|+++++...
T Consensus 220 g~~~~~~~~ 228 (266)
T 2yz2_A 220 GTRMEFLEK 228 (266)
T ss_dssp EEHHHHHHH
T ss_pred CCHHHHhcC
Confidence 998887654
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=7.1e-51 Score=378.79 Aligned_cols=217 Identities=23% Similarity=0.360 Sum_probs=174.7
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++|+++||+++|+ ++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...
T Consensus 19 ~~~l~~~~l~~~y~---------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~- 88 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQ---------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKV- 88 (279)
T ss_dssp CEEEEEEEEEEEET---------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---
T ss_pred CceEEEEeEEEEEC---------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccc-
Confidence 34799999999994 36799999999999999999999999999999999999999999999999764200
Q ss_pred cccccCcccccchhhhhhhhhcCCCccc--cccchHHHHH-hccC------C-CC---HHHHHHHHHHcCCC--cCccCC
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPI--QMDVSAEKMI-FGVA------G-ID---PQRRAELIKVLDID--LSWRMH 172 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~------~-~~---~~~~~~~l~~l~l~--~~~~~~ 172 (348)
.. ....+++.++|+++.... ...+++.+.+ ++.. . .. .+++.++++.+++. .++++.
T Consensus 89 ~~--------~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 160 (279)
T 2ihy_A 89 GY--------SAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG 160 (279)
T ss_dssp -C--------CHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred cC--------CHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh
Confidence 00 001233456666544322 1223444433 3210 1 12 23456788899985 467899
Q ss_pred CCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEE--EEEecChhhhhhhCCEEEEEcCC
Q 018938 173 KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATI--IYATHIFDGLENWPSHIVYVAHG 250 (348)
Q Consensus 173 ~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tv--iivtHd~~~~~~~~d~v~~l~~G 250 (348)
+|||||||||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+|| |+||||++++..+||++++|++|
T Consensus 161 ~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~G 239 (279)
T 2ihy_A 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKDG 239 (279)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999765 8999 99999999999999999999999
Q ss_pred EEeeecChhHHHH
Q 018938 251 KLQLAMPMDKVKE 263 (348)
Q Consensus 251 ~i~~~g~~~~~~~ 263 (348)
++++.|+++++..
T Consensus 240 ~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 240 QSIQQGAVEDILT 252 (279)
T ss_dssp EEEEEEEHHHHCS
T ss_pred EEEEECCHHHHhc
Confidence 9999999887754
No 23
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1e-49 Score=365.03 Aligned_cols=213 Identities=23% Similarity=0.334 Sum_probs=173.9
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
-|+++||+|+|++ +++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....
T Consensus 7 ~~~~~~l~~~y~~-------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~-- 77 (247)
T 2ff7_A 7 DITFRNIRFRYKP-------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD-- 77 (247)
T ss_dssp EEEEEEEEEESST-------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSC--
T ss_pred ceeEEEEEEEeCC-------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCC--
Confidence 5899999999931 2367999999999999999999999999999999999999999999999998652110
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccCCCCHHHHHHHHHHcCCC-------------cCccCCCCC
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVAGIDPQRRAELIKVLDID-------------LSWRMHKVS 175 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LS 175 (348)
...+++.++|+++...++. .++.+.+ ++......+++.++++.+++. .++++.+||
T Consensus 78 ---------~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LS 147 (247)
T 2ff7_A 78 ---------PNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLS 147 (247)
T ss_dssp ---------HHHHHHHEEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCC
T ss_pred ---------HHHHHhcEEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCC
Confidence 1124556788876655443 3555544 332233445566667766653 123568999
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
|||||||+|||||+.+|++|||||||++||+.++..++++|+++. + |+|||+||||++++.. ||++++|++|++++.
T Consensus 148 gGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~tviivtH~~~~~~~-~d~v~~l~~G~i~~~ 224 (247)
T 2ff7_A 148 GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-K-GRTVIIIAHRLSTVKN-ADRIIVMEKGKIVEQ 224 (247)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T-TSEEEEECSSGGGGTT-SSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEeCCHHHHHh-CCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999983 4 8999999999999875 999999999999999
Q ss_pred cChhHHHHh
Q 018938 256 MPMDKVKEA 264 (348)
Q Consensus 256 g~~~~~~~~ 264 (348)
|+++++...
T Consensus 225 g~~~~l~~~ 233 (247)
T 2ff7_A 225 GKHKELLSE 233 (247)
T ss_dssp ECHHHHHTS
T ss_pred CCHHHHHhC
Confidence 999988754
No 24
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=8.3e-50 Score=370.29 Aligned_cols=217 Identities=22% Similarity=0.305 Sum_probs=173.8
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
.+|+++||+++|++. +.+++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....
T Consensus 15 ~~l~~~~l~~~y~~~------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~- 87 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNH------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYD- 87 (271)
T ss_dssp CCEEEEEEEECCTTC------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBC-
T ss_pred ceEEEEEEEEEeCCC------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCC-
Confidence 479999999999520 1257999999999999999999999999999999999999999999999998653210
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhccCCCCH-HH---------HHHHHHHc--CCC--cCccCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGVAGIDP-QR---------RAELIKVL--DID--LSWRMHK 173 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~---------~~~~l~~l--~l~--~~~~~~~ 173 (348)
...+++.++|+++...++.. ++.+ +.++...... .. +.++++.+ ++. .++++.+
T Consensus 88 ----------~~~~~~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~ 156 (271)
T 2ixe_A 88 ----------HHYLHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ 156 (271)
T ss_dssp ----------HHHHHHHEEEECSSCCCCSS-BHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTT
T ss_pred ----------HHHHhccEEEEecCCccccc-cHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCC
Confidence 11245567888776555443 5544 4343322111 11 12345555 443 3567899
Q ss_pred CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++.++.|+|||+||||++++.. ||+|++|++|+++
T Consensus 157 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~G~i~ 235 (271)
T 2ixe_A 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKEGSVC 235 (271)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865568999999999999975 9999999999999
Q ss_pred eecChhHHHHh
Q 018938 254 LAMPMDKVKEA 264 (348)
Q Consensus 254 ~~g~~~~~~~~ 264 (348)
+.|+++++...
T Consensus 236 ~~g~~~~l~~~ 246 (271)
T 2ixe_A 236 EQGTHLQLMER 246 (271)
T ss_dssp EEECHHHHHHH
T ss_pred EECCHHHHHhC
Confidence 99999988654
No 25
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.7e-49 Score=373.35 Aligned_cols=214 Identities=22% Similarity=0.331 Sum_probs=177.1
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
..|+++||+|+|++ ..++|+||||+|++||+++|+||||||||||+|+|+|++.|++|+|.++|.++....
T Consensus 52 ~~i~~~~vs~~y~~--------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~- 122 (306)
T 3nh6_A 52 GRIEFENVHFSYAD--------GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVT- 122 (306)
T ss_dssp CCEEEEEEEEESST--------TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBC-
T ss_pred CeEEEEEEEEEcCC--------CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCC-
Confidence 35999999999952 467999999999999999999999999999999999999999999999998753211
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC-------------cCccCCCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-------------LSWRMHKVS 175 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LS 175 (348)
...+++.++|++|+..++.....+++.++......++..++++..++. ..++..+||
T Consensus 123 ----------~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LS 192 (306)
T 3nh6_A 123 ----------QASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLS 192 (306)
T ss_dssp ----------HHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCC
T ss_pred ----------HHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCC
Confidence 124567788887776655443344555554444455555555554431 234567999
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
|||||||+|||||+.+|+||||||||++||+.++..+++.|+++.+ ++|||+||||++.+.. ||+|++|++|+|++.
T Consensus 193 GGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~ 269 (306)
T 3nh6_A 193 GGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLSTVVN-ADQILVIKDGCIVER 269 (306)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHHHHHT-CSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChHHHHc-CCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999853 7899999999999986 999999999999999
Q ss_pred cChhHHHHh
Q 018938 256 MPMDKVKEA 264 (348)
Q Consensus 256 g~~~~~~~~ 264 (348)
|+++++.+.
T Consensus 270 G~~~el~~~ 278 (306)
T 3nh6_A 270 GRHEALLSR 278 (306)
T ss_dssp ECHHHHHHH
T ss_pred CCHHHHHhc
Confidence 999998764
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.8e-49 Score=364.57 Aligned_cols=201 Identities=20% Similarity=0.319 Sum_probs=165.7
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+++|++ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+.
T Consensus 4 ~l~i~~l~~~y~~--------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~---------- 65 (253)
T 2nq2_C 4 ALSVENLGFYYQA--------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY---------- 65 (253)
T ss_dssp EEEEEEEEEEETT--------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC----------
T ss_pred eEEEeeEEEEeCC--------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe----------
Confidence 7999999999941 4679999999999999999999999999999999999999999998621
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccC---C----CC---HHHHHHHHHHcCCC--cCccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVA---G----ID---PQRRAELIKVLDID--LSWRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~----~~---~~~~~~~l~~l~l~--~~~~~~~LSg 176 (348)
+.++|+++...++...++.+. .++.. + .. .+++.++++.+++. .++++.+|||
T Consensus 66 --------------~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg 131 (253)
T 2nq2_C 66 --------------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSG 131 (253)
T ss_dssp --------------SCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCH
T ss_pred --------------ccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCH
Confidence 123344343333333444433 22210 1 12 23467788999986 4678999999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
||||||+|||||+.+|++|||||||+|||+.++..++++|+++.++.|+|||++|||++++..+||++++|++|+ ++.|
T Consensus 132 Gq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g 210 (253)
T 2nq2_C 132 GQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFG 210 (253)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecC
Confidence 999999999999999999999999999999999999999999876558999999999999999999999999999 8889
Q ss_pred ChhHHHH
Q 018938 257 PMDKVKE 263 (348)
Q Consensus 257 ~~~~~~~ 263 (348)
+++++..
T Consensus 211 ~~~~~~~ 217 (253)
T 2nq2_C 211 ETRNILT 217 (253)
T ss_dssp EHHHHCC
T ss_pred CHHHHhC
Confidence 8887753
No 27
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-49 Score=362.92 Aligned_cols=211 Identities=18% Similarity=0.317 Sum_probs=172.4
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+++|+ +++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.....
T Consensus 1 ml~~~~l~~~y~--------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~- 71 (243)
T 1mv5_A 1 MLSARHVDFAYD--------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL- 71 (243)
T ss_dssp CEEEEEEEECSS--------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSC-
T ss_pred CEEEEEEEEEeC--------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH-
Confidence 489999999994 23679999999999999999999999999999999999999999999999986532110
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc-cCCCCHHHHHHHHHHcCCCc-------------CccCCCC
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG-VAGIDPQRRAELIKVLDIDL-------------SWRMHKV 174 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~l~l~~-------------~~~~~~L 174 (348)
..+++.++|+++...++.. ++.+.+ ++ ......+++.++++.+++.. ++++.+|
T Consensus 72 ----------~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~L 140 (243)
T 1mv5_A 72 ----------ENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKI 140 (243)
T ss_dssp ----------SCCTTTCCEECCSSCCCCE-EHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCC
T ss_pred ----------HHHHhhEEEEcCCCccccc-cHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcC
Confidence 1123456777665544443 555543 33 12334556677788777631 2346799
Q ss_pred CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 254 (348)
Q Consensus 175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 254 (348)
||||||||+|||||+.+|++|||||||+|||+.++..++++|+++. + |+|||+||||++++. .||++++|++|++++
T Consensus 141 SgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~ 217 (243)
T 1mv5_A 141 SGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLSTIV-DADKIYFIEKGQITG 217 (243)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHHHHH-HCSEEEEEETTEECC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChHHHH-hCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999985 4 899999999999886 599999999999999
Q ss_pred ecChhHHHH
Q 018938 255 AMPMDKVKE 263 (348)
Q Consensus 255 ~g~~~~~~~ 263 (348)
.|+++++..
T Consensus 218 ~g~~~~~~~ 226 (243)
T 1mv5_A 218 SGKHNELVA 226 (243)
T ss_dssp CSCHHHHHH
T ss_pred eCCHHHHHh
Confidence 999988765
No 28
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3.7e-49 Score=362.00 Aligned_cols=210 Identities=21% Similarity=0.250 Sum_probs=165.9
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--CcCCCceEEEcCeeccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK--HMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl--~~~~~G~i~i~G~~~~~~~ 107 (348)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.++....
T Consensus 3 ~l~~~~l~~~y~---------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~ 73 (250)
T 2d2e_A 3 QLEIRDLWASID---------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS 73 (250)
T ss_dssp EEEEEEEEEEET---------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSC
T ss_pred eEEEEeEEEEEC---------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCC
Confidence 699999999994 36799999999999999999999999999999999998 7899999999998653211
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc---CC--CC----HHHHHHHHHHcCCC---cCccCCC-
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV---AG--ID----PQRRAELIKVLDID---LSWRMHK- 173 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~--~~----~~~~~~~l~~l~l~---~~~~~~~- 173 (348)
. ....+..++|+++....+..+++.+++ +.. .. .. .+++.++++.+++. .++++.+
T Consensus 74 ~----------~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~ 143 (250)
T 2d2e_A 74 P----------DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEG 143 (250)
T ss_dssp H----------HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC
T ss_pred H----------HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccC
Confidence 0 000122355665555444445554432 111 11 11 23456788889984 3677888
Q ss_pred CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhh-CCEEEEEcCCEE
Q 018938 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW-PSHIVYVAHGKL 252 (348)
Q Consensus 174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~-~d~v~~l~~G~i 252 (348)
|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++.+ .|+|||+||||++++..+ ||++++|++|++
T Consensus 144 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i 222 (250)
T 2d2e_A 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQRILNYIQPDKVHVMMDGRV 222 (250)
T ss_dssp ----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSGGGGTSCCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999854 589999999999999988 599999999999
Q ss_pred eeecChh
Q 018938 253 QLAMPMD 259 (348)
Q Consensus 253 ~~~g~~~ 259 (348)
++.|+++
T Consensus 223 ~~~g~~~ 229 (250)
T 2d2e_A 223 VATGGPE 229 (250)
T ss_dssp EEEESHH
T ss_pred EEEeCHH
Confidence 9999887
No 29
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=7.6e-49 Score=363.13 Aligned_cols=214 Identities=19% Similarity=0.240 Sum_probs=169.7
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC--CcCCCceEEEcCeeccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK--HMVEPEMVKVLGRSAFH 105 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl--~~~~~G~i~i~G~~~~~ 105 (348)
.++|+++||+++|+ ++++|+||||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.++..
T Consensus 18 ~~~l~~~~l~~~y~---------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~ 88 (267)
T 2zu0_C 18 SHMLSIKDLHVSVE---------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA 88 (267)
T ss_dssp --CEEEEEEEEEET---------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGG
T ss_pred CceEEEEeEEEEEC---------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCc
Confidence 35799999999994 46799999999999999999999999999999999998 46889999999986532
Q ss_pred cccccccCcccccchhh-hhhhhhcCCCccccccchHHHHH-h---------ccCCCCH----HHHHHHHHHcCCC---c
Q 018938 106 DTALTSSGDLSYLGGEW-RREVAFAGFEVPIQMDVSAEKMI-F---------GVAGIDP----QRRAELIKVLDID---L 167 (348)
Q Consensus 106 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~----~~~~~~l~~l~l~---~ 167 (348)
... ... +..++|+++...++..++..+++ + +...... +++.++++.+++. .
T Consensus 89 ~~~-----------~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 157 (267)
T 2zu0_C 89 LSP-----------EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLL 157 (267)
T ss_dssp SCH-----------HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTT
T ss_pred CCH-----------HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHh
Confidence 110 011 22356665554444444433321 1 1111222 3456788889984 2
Q ss_pred CccCC-CCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhh-CCEEE
Q 018938 168 SWRMH-KVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENW-PSHIV 245 (348)
Q Consensus 168 ~~~~~-~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~-~d~v~ 245 (348)
++++. +|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++.+ .|+|||+||||++++..+ ||+++
T Consensus 158 ~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~~~~~~~~~d~v~ 236 (267)
T 2zu0_C 158 TRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQRILDYIKPDYVH 236 (267)
T ss_dssp TSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSGGGGGTSCCSEEE
T ss_pred cCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCHHHHHhhcCCEEE
Confidence 56776 5999999999999999999999999999999999999999999998854 489999999999999886 99999
Q ss_pred EEcCCEEeeecChhHHH
Q 018938 246 YVAHGKLQLAMPMDKVK 262 (348)
Q Consensus 246 ~l~~G~i~~~g~~~~~~ 262 (348)
+|++|++++.|+++++.
T Consensus 237 ~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 237 VLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp EEETTEEEEEECTTHHH
T ss_pred EEECCEEEEEcCHHHHh
Confidence 99999999999988764
No 30
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=6.8e-49 Score=359.68 Aligned_cols=208 Identities=19% Similarity=0.253 Sum_probs=175.7
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+++ ++|+++||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|.++....
T Consensus 4 ~l~~~~l~~~-------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~-- 67 (249)
T 2qi9_C 4 VMQLQDVAES-------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWS-- 67 (249)
T ss_dssp EEEEEEEEET-------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSC--
T ss_pred EEEEEceEEE-------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCC--
Confidence 6999999863 4899999999999999999999999999999999999999 99999998642110
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHH-hcc-CCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGV-AGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQIC 185 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lA 185 (348)
...+++.++|+++...++..+++.+.+ ++. .....+++.++++.+++. .++++.+|||||||||+||
T Consensus 68 ---------~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA 138 (249)
T 2qi9_C 68 ---------ATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLA 138 (249)
T ss_dssp ---------HHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHH
T ss_pred ---------HHHHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHH
Confidence 113455678887766555555665543 322 122356678899999986 4678999999999999999
Q ss_pred HHHccCCc-------EEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecCh
Q 018938 186 MGLLKPFK-------VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPM 258 (348)
Q Consensus 186 raL~~~P~-------lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 258 (348)
|||+.+|+ +|||||||+|||+.++..++++|+++.++ |+|||++|||++++..+||++++|++|++++.|++
T Consensus 139 raL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 217 (249)
T 2qi9_C 139 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR 217 (249)
T ss_dssp HHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEH
T ss_pred HHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999 99999999999999999999999998755 99999999999999999999999999999999998
Q ss_pred hHHHH
Q 018938 259 DKVKE 263 (348)
Q Consensus 259 ~~~~~ 263 (348)
+++..
T Consensus 218 ~~~~~ 222 (249)
T 2qi9_C 218 EEVLT 222 (249)
T ss_dssp HHHSC
T ss_pred HHHhc
Confidence 87753
No 31
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.3e-48 Score=357.57 Aligned_cols=214 Identities=19% Similarity=0.289 Sum_probs=171.1
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++|+++||+++|++. ..+++|+++||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|.++....
T Consensus 16 ~~l~i~~l~~~y~~~------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~- 87 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQ------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYN- 87 (260)
T ss_dssp CCEEEEEEEECCTTC------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBC-
T ss_pred CeEEEEEEEEEeCCC------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcC-
Confidence 369999999999531 124699999999999999999999999999999999999976 899999998653210
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHH-HHhccCCCCHHHHHHHHHHcCCC-------------cCccCCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEK-MIFGVAGIDPQRRAELIKVLDID-------------LSWRMHKV 174 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~L 174 (348)
...+++.++|+++...++. .++.+ +.++......+++.++++.+++. .++++.+|
T Consensus 88 ----------~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~L 156 (260)
T 2ghi_A 88 ----------RNSIRSIIGIVPQDTILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKL 156 (260)
T ss_dssp ----------HHHHHTTEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCC
T ss_pred ----------HHHHhccEEEEcCCCcccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcC
Confidence 1123456777776655543 35544 43432223344555666665542 13467899
Q ss_pred CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 254 (348)
Q Consensus 175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 254 (348)
||||||||+|||||+.+|++|||||||+|||+.++..++++|+++. + |+|||+||||++++. .||++++|++|++++
T Consensus 157 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~~~-~~d~i~~l~~G~i~~ 233 (260)
T 2ghi_A 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLSTIS-SAESIILLNKGKIVE 233 (260)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGGST-TCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHHHH-hCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999984 3 799999999999986 599999999999999
Q ss_pred ecChhHHHHh
Q 018938 255 AMPMDKVKEA 264 (348)
Q Consensus 255 ~g~~~~~~~~ 264 (348)
.|+++++...
T Consensus 234 ~g~~~~l~~~ 243 (260)
T 2ghi_A 234 KGTHKDLLKL 243 (260)
T ss_dssp EECHHHHHHH
T ss_pred ECCHHHHHhc
Confidence 9999988653
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.1e-48 Score=359.04 Aligned_cols=207 Identities=21% Similarity=0.317 Sum_probs=169.3
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
||+++||+++|++.. +.+++|+++||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|.++... .
T Consensus 1 ml~~~~l~~~y~~~~-----~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~-~- 71 (263)
T 2pjz_A 1 MIQLKNVGITLSGKG-----YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI-R- 71 (263)
T ss_dssp CEEEEEEEEEEEEET-----TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC-S-
T ss_pred CEEEEEEEEEeCCCC-----ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch-H-
Confidence 489999999994100 01579999999999 9999999999999999999999999 9999999999865321 0
Q ss_pred cccCcccccchhhhhhhh-hcCCCccccccchHHHHH-hc--cCCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVA-FAGFEVPIQMDVSAEKMI-FG--VAGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRV 182 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv 182 (348)
. ++.++ |+++...+ ..+..+.+ +. ......+++.++++.+++. .++++.+|||||||||
T Consensus 72 -----------~-~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv 137 (263)
T 2pjz_A 72 -----------N-YIRYSTNLPEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLV 137 (263)
T ss_dssp -----------C-CTTEEECCGGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHH
T ss_pred -----------H-hhheEEEeCCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHH
Confidence 1 23345 55444333 34444332 21 1133456778899999987 4678999999999999
Q ss_pred HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCC-EEEEEcCCEEeeecChhHH
Q 018938 183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS-HIVYVAHGKLQLAMPMDKV 261 (348)
Q Consensus 183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d-~v~~l~~G~i~~~g~~~~~ 261 (348)
+|||||+.+|++|||||||+|||+.++..++++|+++. . |||+||||++++..+|| ++++|++|++++.|+++++
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l 213 (263)
T 2pjz_A 138 RTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSEL 213 (263)
T ss_dssp HHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999998863 2 99999999999999999 9999999999999999887
Q ss_pred HH
Q 018938 262 KE 263 (348)
Q Consensus 262 ~~ 263 (348)
.+
T Consensus 214 ~~ 215 (263)
T 2pjz_A 214 LE 215 (263)
T ss_dssp HT
T ss_pred Hh
Confidence 64
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.5e-48 Score=373.41 Aligned_cols=216 Identities=18% Similarity=0.222 Sum_probs=179.1
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
..|+++||+|+|+. ++..+|++|||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++....
T Consensus 18 ~~i~~~~l~~~y~~-------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~- 88 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSIT- 88 (390)
T ss_dssp CCEEEEEEEEESSS-------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSC-
T ss_pred CeEEEEEEEEEecC-------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCC-
Confidence 46999999999953 34689999999999999999999999999999999999987 8999999998653211
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCC-----------CC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHK-----------VS 175 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~-----------LS 175 (348)
...+++.++|++|+..++. .++.+++........+++.++++.+++. .++++.+ ||
T Consensus 89 ----------~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LS 157 (390)
T 3gd7_A 89 ----------LEQWRKAFGVIPQKVFIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLS 157 (390)
T ss_dssp ----------HHHHHHTEEEESCCCCCCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSC
T ss_pred ----------hHHHhCCEEEEcCCcccCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCC
Confidence 1234567788877655554 4555554322334566778889999885 3666776 99
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
|||||||+|||||+.+|++|||||||++||+..+..+++.|+++. .+.|+|+||||++.+. .||||++|++|+|+..
T Consensus 158 GGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~~~ 234 (390)
T 3gd7_A 158 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIEAML-ECDQFLVIEENKVRQY 234 (390)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSGGGT-TCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHHHHH-hCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999998763 4799999999987664 6999999999999999
Q ss_pred cChhHHHHhhhh
Q 018938 256 MPMDKVKEASKL 267 (348)
Q Consensus 256 g~~~~~~~~~~~ 267 (348)
|+++++...+..
T Consensus 235 g~~~el~~~p~~ 246 (390)
T 3gd7_A 235 DSILELYHYPAD 246 (390)
T ss_dssp SSHHHHHHCCSB
T ss_pred CCHHHHHhCCCc
Confidence 999999876543
No 34
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=9.7e-48 Score=349.81 Aligned_cols=199 Identities=19% Similarity=0.293 Sum_probs=155.9
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+++|++ +++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|..
T Consensus 3 ~l~~~~l~~~y~~-------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i------- 68 (237)
T 2cbz_A 3 SITVRNATFTWAR-------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSV------- 68 (237)
T ss_dssp CEEEEEEEEESCT-------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCE-------
T ss_pred eEEEEEEEEEeCC-------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE-------
Confidence 5999999999952 13679999999999999999999999999999999999999999999998831
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccCCCCHHHHHHHHHH------cCCC-------cCccCCCCC
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVAGIDPQRRAELIKV------LDID-------LSWRMHKVS 175 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~------l~l~-------~~~~~~~LS 175 (348)
+|+++...+ ...++.+. .++.. ...+...++++. +++. .++++.+||
T Consensus 69 -----------------~~v~Q~~~~-~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS 129 (237)
T 2cbz_A 69 -----------------AYVPQQAWI-QNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLS 129 (237)
T ss_dssp -----------------EEECSSCCC-CSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCC
T ss_pred -----------------EEEcCCCcC-CCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCC
Confidence 222222211 23344433 33221 111122223332 2221 246789999
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHH---HHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLR---KECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~---~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 252 (348)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|. ++. .|+|||+||||++++. .||++++|++|++
T Consensus 130 gGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~~~~-~~d~v~~l~~G~i 206 (237)
T 2cbz_A 130 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMSYLP-QVDVIIVMSGGKI 206 (237)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCSTTGG-GSSEEEEEETTEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChHHHH-hCCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999984 332 3899999999999986 6999999999999
Q ss_pred eeecChhHHHHh
Q 018938 253 QLAMPMDKVKEA 264 (348)
Q Consensus 253 ~~~g~~~~~~~~ 264 (348)
++.|+++++...
T Consensus 207 ~~~g~~~~~~~~ 218 (237)
T 2cbz_A 207 SEMGSYQELLAR 218 (237)
T ss_dssp EEEECHHHHHHH
T ss_pred EEeCCHHHHhhc
Confidence 999999988653
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.5e-47 Score=345.37 Aligned_cols=199 Identities=25% Similarity=0.345 Sum_probs=154.9
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
.+|+++||+++|++ +++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|..
T Consensus 5 ~~l~~~~l~~~y~~-------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i------ 71 (229)
T 2pze_A 5 TEVVMENVTAFWEE-------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI------ 71 (229)
T ss_dssp EEEEEEEEEECSST-------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCE------
T ss_pred ceEEEEEEEEEeCC-------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEE------
Confidence 37999999999952 24679999999999999999999999999999999999999999999998732
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccCCCCHHHHHHHHHHcCCC-------------cCccCCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVAGIDPQRRAELIKVLDID-------------LSWRMHKV 174 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~L 174 (348)
+|+++...++.. ++.++ .++.. .......++++.+++. .++++.+|
T Consensus 72 ------------------~~v~q~~~~~~~-tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L 131 (229)
T 2pze_A 72 ------------------SFCSQFSWIMPG-TIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL 131 (229)
T ss_dssp ------------------EEECSSCCCCSB-CHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTS
T ss_pred ------------------EEEecCCcccCC-CHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcC
Confidence 222222222222 33333 33221 1222223333333321 12346899
Q ss_pred CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHH-HHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRF-LRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~-l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
||||||||+|||||+.+|++|||||||+|||+.++..+++. ++++. .|+|||++|||++++. .||++++|++|+++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~ 208 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEHLK-KADKILILHEGSSY 208 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHHHH-HCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChHHHH-hCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999997 45543 3789999999999986 59999999999999
Q ss_pred eecChhHHHH
Q 018938 254 LAMPMDKVKE 263 (348)
Q Consensus 254 ~~g~~~~~~~ 263 (348)
+.|+++++..
T Consensus 209 ~~g~~~~~~~ 218 (229)
T 2pze_A 209 FYGTFSELQN 218 (229)
T ss_dssp EEECHHHHHT
T ss_pred EECCHHHHHh
Confidence 9999988764
No 36
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=6e-48 Score=345.67 Aligned_cols=196 Identities=20% Similarity=0.270 Sum_probs=162.0
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
.+|+++||+++|+ + ++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 9 ~~l~~~~ls~~y~---------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~---- 74 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT---- 74 (214)
T ss_dssp CEEEEEEEEEESS---------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG----
T ss_pred ceEEEEEEEEEeC---------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh----
Confidence 5799999999993 5 8999999999999999999999999999999999999999999999997642
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hc--cC--CCCHHHHHHHHHHcCCCc-CccCCCCCHHHHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FG--VA--GIDPQRRAELIKVLDIDL-SWRMHKVSDGQRRRV 182 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~--~~~~~~~~~~l~~l~l~~-~~~~~~LSgGqrQRv 182 (348)
.+++.++|++++..++..+++.+.+ +. .. ....+++.++++.+++.. ++++.+|||||||||
T Consensus 75 ------------~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv 142 (214)
T 1sgw_A 75 ------------KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRV 142 (214)
T ss_dssp ------------GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHH
T ss_pred ------------hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHH
Confidence 0234466666655544444554432 21 11 223556788999998854 677899999999999
Q ss_pred HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938 183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252 (348)
Q Consensus 183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 252 (348)
+|||||+.+|++|||||||+|||+.++..++++|+++.++ |.|||++|||++++..+||+++++ .|+|
T Consensus 143 ~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 143 QLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999999999998754 899999999999999999998754 4554
No 37
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6e-45 Score=371.48 Aligned_cols=215 Identities=21% Similarity=0.285 Sum_probs=176.9
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
..|+++|++|+|++ +..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 340 ~~i~~~~v~~~y~~-------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~-- 410 (587)
T 3qf4_A 340 GSVSFENVEFRYFE-------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV-- 410 (587)
T ss_dssp CCEEEEEEEECSSS-------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGB--
T ss_pred CcEEEEEEEEEcCC-------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccC--
Confidence 46999999999963 346799999999999999999999999999999999999999999999999865321
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCC-----------C--cCccCCCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI-----------D--LSWRMHKVS 175 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-----------~--~~~~~~~LS 175 (348)
....+++.+++++|+..++.....+++.++....+.++..+.++..++ + ..++..+||
T Consensus 411 ---------~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LS 481 (587)
T 3qf4_A 411 ---------KLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFS 481 (587)
T ss_dssp ---------CHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSC
T ss_pred ---------CHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcC
Confidence 112456778888887666544333444444444445544444444332 1 245678999
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
||||||++|||||+++|++|||||||++||+.++..+.+.|+++. .|+|+|+|||+++.+. .||+|++|++|++++.
T Consensus 482 gGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~ 558 (587)
T 3qf4_A 482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIPTAL-LADKILVLHEGKVAGF 558 (587)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHHHHT-TSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChHHHH-hCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999874 4899999999999986 7999999999999999
Q ss_pred cChhHHHHh
Q 018938 256 MPMDKVKEA 264 (348)
Q Consensus 256 g~~~~~~~~ 264 (348)
|+++++.+.
T Consensus 559 g~~~el~~~ 567 (587)
T 3qf4_A 559 GTHKELLEH 567 (587)
T ss_dssp ECHHHHHHH
T ss_pred CCHHHHHhC
Confidence 999998764
No 38
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=5.1e-45 Score=371.57 Aligned_cols=215 Identities=20% Similarity=0.335 Sum_probs=177.5
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
..|+++||+|+|++ ++.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....
T Consensus 338 ~~i~~~~v~~~y~~-------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~- 409 (578)
T 4a82_A 338 GRIDIDHVSFQYND-------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL- 409 (578)
T ss_dssp CCEEEEEEEECSCS-------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSC-
T ss_pred CeEEEEEEEEEcCC-------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCC-
Confidence 46999999999963 3467999999999999999999999999999999999999999999999998753211
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC-------------cCccCCCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-------------LSWRMHKVS 175 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LS 175 (348)
...+++.+++++|+..++.....+++.++....+.++..+.++..++. ..++..+||
T Consensus 410 ----------~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LS 479 (578)
T 4a82_A 410 ----------TGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479 (578)
T ss_dssp ----------HHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSC
T ss_pred ----------HHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCC
Confidence 124567788888776665553344555554444555566666555431 123457899
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
||||||++|||||+++|++||||||||+||+.++..+.+.++++. .++|+|+||||++.+.. ||+|++|++|++++.
T Consensus 480 gGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~ 556 (578)
T 4a82_A 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLSTITH-ADKIVVIENGHIVET 556 (578)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGGGTTT-CSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999874 37899999999999865 999999999999999
Q ss_pred cChhHHHHh
Q 018938 256 MPMDKVKEA 264 (348)
Q Consensus 256 g~~~~~~~~ 264 (348)
|+++++.+.
T Consensus 557 g~~~el~~~ 565 (578)
T 4a82_A 557 GTHRELIAK 565 (578)
T ss_dssp ECHHHHHHT
T ss_pred CCHHHHHhC
Confidence 999998764
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=5.1e-45 Score=371.93 Aligned_cols=214 Identities=21% Similarity=0.308 Sum_probs=176.3
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
.+|+++||+|+|++ +++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....
T Consensus 340 ~~i~~~~v~~~y~~-------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~- 411 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG-------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK- 411 (582)
T ss_pred CeEEEEEEEEEcCC-------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCC-
Confidence 46999999999953 2267999999999999999999999999999999999999999999999998653211
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHH-HHHhcc-CCCCHHHHHHHHHHcCCC-------------cCccCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGV-AGIDPQRRAELIKVLDID-------------LSWRMHK 173 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~l~~l~l~-------------~~~~~~~ 173 (348)
...+++.+++++|+..++.. +.. ++.++. ...+.+++.++++.+++. ..++..+
T Consensus 412 ----------~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~ 480 (582)
T 3b5x_A 412 ----------LTNLRRHFALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTS 480 (582)
T ss_pred ----------HHHHhcCeEEEcCCCccccc-cHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCc
Confidence 12345667888776655544 444 444443 334556667777776652 1234579
Q ss_pred CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++. + |+|+|+||||++.+. .||+|++|++|+++
T Consensus 481 LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~ 557 (582)
T 3b5x_A 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-K-NKTVLVIAHRLSTIE-QADEILVVDEGEII 557 (582)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHHHH-hCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999974 3 899999999999986 69999999999999
Q ss_pred eecChhHHHHh
Q 018938 254 LAMPMDKVKEA 264 (348)
Q Consensus 254 ~~g~~~~~~~~ 264 (348)
+.|+++++.+.
T Consensus 558 ~~g~~~~l~~~ 568 (582)
T 3b5x_A 558 ERGRHADLLAQ 568 (582)
T ss_pred EECCHHHHHhC
Confidence 99999998754
No 40
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=6e-45 Score=371.41 Aligned_cols=215 Identities=24% Similarity=0.315 Sum_probs=177.5
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
.+|+++||+|+|++ +++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....
T Consensus 340 ~~i~~~~v~~~y~~-------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~- 411 (582)
T 3b60_A 340 GDLEFRNVTFTYPG-------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYT- 411 (582)
T ss_dssp CCEEEEEEEECSSS-------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBC-
T ss_pred CcEEEEEEEEEcCC-------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccC-
Confidence 46999999999952 1267999999999999999999999999999999999999999999999998753211
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc-CCCCHHHHHHHHHHcCCC-------------cCccCCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV-AGIDPQRRAELIKVLDID-------------LSWRMHKV 174 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~l~-------------~~~~~~~L 174 (348)
...+++.+++++|+..++.....+++.++. ...+.++..++++.+++. ..++..+|
T Consensus 412 ----------~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~L 481 (582)
T 3b60_A 412 ----------LASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 481 (582)
T ss_dssp ----------HHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSS
T ss_pred ----------HHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCC
Confidence 123566788887776655543334444443 344566667777776652 12356799
Q ss_pred CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 254 (348)
Q Consensus 175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 254 (348)
|||||||++|||||+++|++||||||||+||+.++..+.+.|+++. + |+|+|+||||++.+. .||+|++|++|++++
T Consensus 482 SgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~ 558 (582)
T 3b60_A 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-K-NRTSLVIAHRLSTIE-QADEIVVVEDGIIVE 558 (582)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-T-TSEEEEECSCGGGTT-TCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-C-CCEEEEEeccHHHHH-hCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999985 3 899999999999886 699999999999999
Q ss_pred ecChhHHHHh
Q 018938 255 AMPMDKVKEA 264 (348)
Q Consensus 255 ~g~~~~~~~~ 264 (348)
.|+++++.+.
T Consensus 559 ~g~~~~l~~~ 568 (582)
T 3b60_A 559 RGTHSELLAQ 568 (582)
T ss_dssp EECHHHHHHH
T ss_pred ecCHHHHHHc
Confidence 9999998754
No 41
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.3e-44 Score=369.89 Aligned_cols=212 Identities=22% Similarity=0.320 Sum_probs=173.3
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
|+++||+|+|++. .+.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....
T Consensus 342 i~~~~v~~~y~~~------~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~--- 412 (595)
T 2yl4_A 342 LEFKNVHFAYPAR------PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLN--- 412 (595)
T ss_dssp EEEEEEEEECSSC------TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBC---
T ss_pred EEEEEEEEEeCCC------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCC---
Confidence 9999999999631 1247999999999999999999999999999999999999999999999998753211
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHH-HHHhccCC---CCHHHHHHHHHHcCCC---------c----CccCCC
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAE-KMIFGVAG---IDPQRRAELIKVLDID---------L----SWRMHK 173 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~l~~l~l~---------~----~~~~~~ 173 (348)
...+++.+++++|+..++.. +.. ++.++... .+.+++.++++.+++. . .++..+
T Consensus 413 --------~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~ 483 (595)
T 2yl4_A 413 --------PVWLRSKIGTVSQEPILFSC-SIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483 (595)
T ss_dssp --------HHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCC
T ss_pred --------HHHHHhceEEEccCCcccCC-CHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCc
Confidence 12355678888777665544 444 44444332 4566677777777652 1 223589
Q ss_pred CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
|||||||||+|||||+++|++|||||||++||+.++..+.+.|+++.+ |+|+|+||||++.+. .||+|++|++|+++
T Consensus 484 LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~~l~~G~i~ 560 (595)
T 2yl4_A 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRTVLVIAHRLSTIK-NANMVAVLDQGKIT 560 (595)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSEEEEECCCHHHHH-HSSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHHH-cCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999853 789999999999986 59999999999999
Q ss_pred eecChhHHHH
Q 018938 254 LAMPMDKVKE 263 (348)
Q Consensus 254 ~~g~~~~~~~ 263 (348)
+.|+++++.+
T Consensus 561 ~~g~~~~l~~ 570 (595)
T 2yl4_A 561 EYGKHEELLS 570 (595)
T ss_dssp EEECSCC---
T ss_pred EECCHHHHHh
Confidence 9999998865
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.1e-45 Score=372.82 Aligned_cols=214 Identities=23% Similarity=0.332 Sum_probs=175.2
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
..|+++||+|+|++ +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++....
T Consensus 353 ~~i~~~~v~~~y~~--------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~- 423 (598)
T 3qf4_B 353 GEIEFKNVWFSYDK--------KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIK- 423 (598)
T ss_dssp CCEEEEEEECCSSS--------SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSC-
T ss_pred CeEEEEEEEEECCC--------CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCC-
Confidence 35999999999952 467999999999999999999999999999999999999999999999998753211
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC-------------cCccCCCCC
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-------------LSWRMHKVS 175 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~LS 175 (348)
...+++.+++++|+..++.....+++.++....+.++..++++..++. ..++..+||
T Consensus 424 ----------~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LS 493 (598)
T 3qf4_B 424 ----------RSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLS 493 (598)
T ss_dssp ----------HHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSC
T ss_pred ----------HHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCC
Confidence 124567788887776655443344454544333444455555554432 112347899
Q ss_pred HHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 176 DGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 176 gGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 494 gGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~ 570 (598)
T 3qf4_B 494 QGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEM 570 (598)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTTHHHH-CSEEEEECSSSEEEC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999984 38999999999999875 999999999999999
Q ss_pred cChhHHHHh
Q 018938 256 MPMDKVKEA 264 (348)
Q Consensus 256 g~~~~~~~~ 264 (348)
|+++++.+.
T Consensus 571 g~~~~l~~~ 579 (598)
T 3qf4_B 571 GKHDELIQK 579 (598)
T ss_dssp SCHHHHHHT
T ss_pred CCHHHHHhC
Confidence 999998764
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.2e-44 Score=338.46 Aligned_cols=196 Identities=24% Similarity=0.327 Sum_probs=140.9
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++|+++||++.+ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|..
T Consensus 38 ~~~l~~~~l~~~~-----------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i----- 101 (290)
T 2bbs_A 38 DDSLSFSNFSLLG-----------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI----- 101 (290)
T ss_dssp ------------C-----------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCE-----
T ss_pred CceEEEEEEEEcC-----------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEE-----
Confidence 3579999999864 469999999999999999999999999999999999999999999988731
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC-------------cCccCCCC
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-------------LSWRMHKV 174 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~L 174 (348)
+|+++...++.. +..+++.+. ........++++.+++. ..+++.+|
T Consensus 102 -------------------~~v~Q~~~l~~~-tv~enl~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~L 160 (290)
T 2bbs_A 102 -------------------SFCSQNSWIMPG-TIKENIIGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL 160 (290)
T ss_dssp -------------------EEECSSCCCCSS-BHHHHHHTT-CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCC
T ss_pred -------------------EEEeCCCccCcc-cHHHHhhCc-ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcC
Confidence 222222222222 343333221 11222233334444331 12245799
Q ss_pred CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHH-HHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL-RKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l-~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
||||||||+|||||+.+|++|||||||+|||+.++..+++.+ +++. .|+|||+||||++++. .||++++|++|+++
T Consensus 161 SgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~~~~~-~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEHLK-KADKILILHEGSSY 237 (290)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHHHH-HSSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCHHHHH-cCCEEEEEECCeEE
Confidence 999999999999999999999999999999999999999974 4443 3899999999999986 59999999999999
Q ss_pred eecChhHHHH
Q 018938 254 LAMPMDKVKE 263 (348)
Q Consensus 254 ~~g~~~~~~~ 263 (348)
..|+++++..
T Consensus 238 ~~g~~~~l~~ 247 (290)
T 2bbs_A 238 FYGTFSELQN 247 (290)
T ss_dssp EEECHHHHHH
T ss_pred EeCCHHHHhh
Confidence 9999988754
No 44
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.5e-42 Score=348.29 Aligned_cols=202 Identities=22% Similarity=0.255 Sum_probs=162.7
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++++++|+++.|+ + ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+..
T Consensus 285 ~~~l~~~~l~~~~~---------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~------- 347 (538)
T 1yqt_A 285 ETLVTYPRLVKDYG---------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDL------- 347 (538)
T ss_dssp CEEEEECCEEEEET---------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCC-------
T ss_pred CeEEEEeeEEEEEC---------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECc-------
Confidence 45799999999994 2 479999999999999999999999999999999999999999876411
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc--C-CCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV--A-GIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRV 182 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv 182 (348)
.+. |+++........++.+++... . ....+.+.++++.+++. .++++.+|||||||||
T Consensus 348 ------~i~-----------~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv 410 (538)
T 1yqt_A 348 ------TVA-----------YKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRV 410 (538)
T ss_dssp ------CEE-----------EECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHH
T ss_pred ------eEE-----------EEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHH
Confidence 122 222222111222333332111 0 01234566778888875 3678999999999999
Q ss_pred HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC--CEEeeecChhH
Q 018938 183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH--GKLQLAMPMDK 260 (348)
Q Consensus 183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~--G~i~~~g~~~~ 260 (348)
+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||+||||++++..+||||++|++ |++...|++++
T Consensus 411 ~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 411 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHH
Confidence 9999999999999999999999999999999999998766799999999999999999999999986 78888899988
Q ss_pred HHH
Q 018938 261 VKE 263 (348)
Q Consensus 261 ~~~ 263 (348)
+.+
T Consensus 491 ~~~ 493 (538)
T 1yqt_A 491 MRE 493 (538)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=4.6e-42 Score=350.16 Aligned_cols=202 Identities=23% Similarity=0.266 Sum_probs=163.9
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++++++|+++.|+ + ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+..
T Consensus 355 ~~~l~~~~l~~~~~---------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~------- 417 (607)
T 3bk7_A 355 ETLVEYPRLVKDYG---------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL------- 417 (607)
T ss_dssp CEEEEECCEEEECS---------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCC-------
T ss_pred ceEEEEeceEEEec---------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEee-------
Confidence 35799999999994 2 479999999999999999999999999999999999999999876411
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc--CC-CCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV--AG-IDPQRRAELIKVLDID--LSWRMHKVSDGQRRRV 182 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv 182 (348)
.+ +|++|........++.+++... .. ...+.+.++++.+++. .++++.+|||||||||
T Consensus 418 ------~i-----------~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv 480 (607)
T 3bk7_A 418 ------TV-----------AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRV 480 (607)
T ss_dssp ------CE-----------EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHH
T ss_pred ------EE-----------EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHH
Confidence 12 2222222222223333332211 00 1234567788899885 4678999999999999
Q ss_pred HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC--CEEeeecChhH
Q 018938 183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH--GKLQLAMPMDK 260 (348)
Q Consensus 183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~--G~i~~~g~~~~ 260 (348)
+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||+||||++++..+|||+++|++ |++...|++++
T Consensus 481 ~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 481 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHH
Confidence 9999999999999999999999999999999999999766799999999999999999999999986 77888899988
Q ss_pred HHH
Q 018938 261 VKE 263 (348)
Q Consensus 261 ~~~ 263 (348)
+.+
T Consensus 561 ~~~ 563 (607)
T 3bk7_A 561 MRE 563 (607)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 46
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.6e-42 Score=344.75 Aligned_cols=202 Identities=19% Similarity=0.183 Sum_probs=159.1
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.+.++++|+++.|+ ...|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+++..+
T Consensus 267 ~~~l~~~~l~~~~~----------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i---- 332 (538)
T 3ozx_A 267 KTKMKWTKIIKKLG----------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQIL---- 332 (538)
T ss_dssp CEEEEECCEEEEET----------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCE----
T ss_pred cceEEEcceEEEEC----------CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeee----
Confidence 45799999999994 2568889999999999999999999999999999999999999998765421
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHHH-hccC---CCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHH
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-FGVA---GIDPQRRAELIKVLDID--LSWRMHKVSDGQRRR 181 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQR 181 (348)
.++. +........++.+.+ .... ........++++.+++. .++++.+||||||||
T Consensus 333 --------~~~~-----------q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QR 393 (538)
T 3ozx_A 333 --------SYKP-----------QRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQK 393 (538)
T ss_dssp --------EEEC-----------SSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHH
T ss_pred --------Eeec-----------hhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHH
Confidence 1111 111111112222221 1111 11223456777778875 467899999999999
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC--CEEeeecChh
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH--GKLQLAMPMD 259 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~--G~i~~~g~~~ 259 (348)
|+|||||+.+|++|||||||+|||+.++..++++|++++++.|.|||+||||++++..+||||++|++ |.+...+++.
T Consensus 394 v~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~ 473 (538)
T 3ozx_A 394 LYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPV 473 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChH
Confidence 99999999999999999999999999999999999999877799999999999999999999999986 4555556665
Q ss_pred HHH
Q 018938 260 KVK 262 (348)
Q Consensus 260 ~~~ 262 (348)
++.
T Consensus 474 ~~~ 476 (538)
T 3ozx_A 474 TLK 476 (538)
T ss_dssp EHH
T ss_pred HHH
Confidence 544
No 47
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.2e-41 Score=373.94 Aligned_cols=216 Identities=22% Similarity=0.314 Sum_probs=181.8
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++||+|+|+.. .+.++|+||||+|++||.+||+||||||||||+++|.|++.|++|+|.++|.++..-
T Consensus 1076 ~I~f~nVsf~Y~~~------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i--- 1146 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTL--- 1146 (1321)
T ss_dssp CEEEEEEEECCTTS------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTB---
T ss_pred eEEEEEEEEeCCCC------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhC---
Confidence 59999999999641 245799999999999999999999999999999999999999999999999876321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhcc--CCCCHHHHHHHHHHcCCC---------cC----ccCCCC
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGV--AGIDPQRRAELIKVLDID---------LS----WRMHKV 174 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~l~---------~~----~~~~~L 174 (348)
-...+|+.+++++|++.++.....+++.++. ...+.+++.++++..++. .+ .....|
T Consensus 1147 --------~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~L 1218 (1321)
T 4f4c_A 1147 --------NPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQL 1218 (1321)
T ss_dssp --------CHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSS
T ss_pred --------CHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCccc
Confidence 1235788899998887777665556665554 234566777777766541 12 234679
Q ss_pred CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 254 (348)
Q Consensus 175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 254 (348)
|||||||++|||||+++|+|||||||||+||+++...+.+.|+++. .|+|+|+|+|.++.+.. ||+|+||++|+|++
T Consensus 1219 SgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLsTi~~-aD~I~Vld~G~IvE 1295 (1321)
T 4f4c_A 1219 SGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLNTVMN-ADCIAVVSNGTIIE 1295 (1321)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSSTTTT-CSEEEEESSSSEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHHHHHh-CCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998764 48999999999999875 99999999999999
Q ss_pred ecChhHHHHhh
Q 018938 255 AMPMDKVKEAS 265 (348)
Q Consensus 255 ~g~~~~~~~~~ 265 (348)
.|+++++.+..
T Consensus 1296 ~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1296 KGTHTQLMSEK 1306 (1321)
T ss_dssp EECHHHHHHCC
T ss_pred ECCHHHHHhCC
Confidence 99999998753
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.5e-41 Score=367.42 Aligned_cols=216 Identities=23% Similarity=0.309 Sum_probs=177.1
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++||+|+|++. .+.++|+|+||+|++||+++|+||||||||||+++|+|++.|++|+|.++|.++....
T Consensus 387 ~i~~~~v~~~y~~~------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~-- 458 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSR------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTIN-- 458 (1284)
T ss_dssp CEEEEEEEECCSST------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSC--
T ss_pred eEEEEEEEEEcCCC------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCC--
Confidence 59999999999631 2357999999999999999999999999999999999999999999999998753211
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCC---------C----cCccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI---------D----LSWRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~LSg 176 (348)
...+++.+++++|++.++.....+++.++....+.+++.+.++..++ . ...+..+|||
T Consensus 459 ---------~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSg 529 (1284)
T 3g5u_A 459 ---------VRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSG 529 (1284)
T ss_dssp ---------HHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCH
T ss_pred ---------HHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCH
Confidence 12456778898887766655444555555544455554444443322 1 2345678999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
||||||+|||||+.+|+|||||||||+||+.+...+.+.++++. .|+|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 530 Gq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g 606 (1284)
T 3g5u_A 530 GQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQG 606 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHHHc-CCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999998764 48999999999999976 9999999999999999
Q ss_pred ChhHHHHhh
Q 018938 257 PMDKVKEAS 265 (348)
Q Consensus 257 ~~~~~~~~~ 265 (348)
+++++.+..
T Consensus 607 ~~~~l~~~~ 615 (1284)
T 3g5u_A 607 NHDELMREK 615 (1284)
T ss_dssp CHHHHHHTT
T ss_pred CHHHHHhCC
Confidence 999987643
No 49
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1e-40 Score=366.74 Aligned_cols=216 Identities=25% Similarity=0.332 Sum_probs=183.9
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++|++|+|++. .+.++|+|+||+|++|+.++|+||||||||||+++|.|++.|++|+|.++|.++..-
T Consensus 415 ~I~~~nvsF~Y~~~------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~--- 485 (1321)
T 4f4c_A 415 DITVENVHFTYPSR------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDI--- 485 (1321)
T ss_dssp CEEEEEEEECCSSS------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTS---
T ss_pred cEEEEEeeeeCCCC------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhc---
Confidence 59999999999642 246899999999999999999999999999999999999999999999999875321
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---------c----CccCCCCCH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---------L----SWRMHKVSD 176 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~LSg 176 (348)
....+++.++|++|++.++.....+++.++....+.+++.++++..++. . ..+...|||
T Consensus 486 --------~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSG 557 (1321)
T 4f4c_A 486 --------NLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSG 557 (1321)
T ss_dssp --------CHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCH
T ss_pred --------cHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCH
Confidence 1234678899998887776666666777776666777777777665531 1 234568999
Q ss_pred HHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
|||||++||||++++|+|||||||||+||+++...+.+.|.++. .|+|+|+|||++..+. .||+|++|++|+|++.|
T Consensus 558 GQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrls~i~-~aD~Iivl~~G~ive~G 634 (1321)
T 4f4c_A 558 GQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRLSTIR-NADLIISCKNGQVVEVG 634 (1321)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCTTTTT-TCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh--CCCEEEEEcccHHHHH-hCCEEEEeeCCeeeccC
Confidence 99999999999999999999999999999999999999999875 3899999999999886 59999999999999999
Q ss_pred ChhHHHHhh
Q 018938 257 PMDKVKEAS 265 (348)
Q Consensus 257 ~~~~~~~~~ 265 (348)
+.+++.+..
T Consensus 635 th~eL~~~~ 643 (1321)
T 4f4c_A 635 DHRALMAQQ 643 (1321)
T ss_dssp CHHHHHTTT
T ss_pred CHHHHHHhh
Confidence 999998653
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.5e-40 Score=364.49 Aligned_cols=216 Identities=23% Similarity=0.309 Sum_probs=172.6
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|+++||+++|++. .+.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 1030 ~i~~~~v~~~y~~~------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~-- 1101 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLN-- 1101 (1284)
T ss_dssp CEEEEEEEBCCSCG------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSC--
T ss_pred cEEEEEEEEECCCC------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCC--
Confidence 59999999999631 1347999999999999999999999999999999999999999999999998653211
Q ss_pred cccCcccccchhhhhhhhhcCCCccccccchHHHHHhccC--CCCHHHHHHHHHHcCCC---------c----CccCCCC
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVA--GIDPQRRAELIKVLDID---------L----SWRMHKV 174 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~l~---------~----~~~~~~L 174 (348)
...+++.+++++|+..++.....+++.++.. ..+.+.+.+.++..++. . .....+|
T Consensus 1102 ---------~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~L 1172 (1284)
T 3g5u_A 1102 ---------VQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQL 1172 (1284)
T ss_dssp ---------HHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSS
T ss_pred ---------HHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCcc
Confidence 1235566788877665444333344444332 23444555555544331 1 2345689
Q ss_pred CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEee
Q 018938 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQL 254 (348)
Q Consensus 175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 254 (348)
||||||||+|||||+.+|+||||||||+|||+.+...+.+.|+++ ..|+|||+||||++++.. ||||++|++|++++
T Consensus 1173 SgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~--~~~~tvi~isH~l~~i~~-~dri~vl~~G~i~~ 1249 (1284)
T 3g5u_A 1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA--REGRTCIVIAHRLSTIQN-ADLIVVIQNGKVKE 1249 (1284)
T ss_dssp CHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH--SSSSCEEEECSCTTGGGS-CSEEEEEETBEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh--CCCCEEEEEecCHHHHHc-CCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999875 348999999999999965 99999999999999
Q ss_pred ecChhHHHHhh
Q 018938 255 AMPMDKVKEAS 265 (348)
Q Consensus 255 ~g~~~~~~~~~ 265 (348)
.|+++++.+..
T Consensus 1250 ~g~~~~l~~~~ 1260 (1284)
T 3g5u_A 1250 HGTHQQLLAQK 1260 (1284)
T ss_dssp EECHHHHHHSC
T ss_pred ECCHHHHHhCC
Confidence 99999998653
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-40 Score=337.70 Aligned_cols=199 Identities=22% Similarity=0.338 Sum_probs=158.2
Q ss_pred eceEEEecCCCCCCCCCCCceeeeeeeEEeCC-----CEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 34 NALKFTYPGIDGHPPPGSTPLINDFTLTLNAG-----DRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 34 ~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~G-----e~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
++++++|+. ...+++++||++.+| |+++|+||||||||||+|+|+|+++|++|+. +.
T Consensus 350 ~~~~~~y~~--------~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~-~~--------- 411 (608)
T 3j16_B 350 ASRAFSYPS--------LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-IP--------- 411 (608)
T ss_dssp SSSCCEECC--------EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC-CC---------
T ss_pred cceeEEecC--------cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC-cc---------
Confidence 678888852 346899999999999 8899999999999999999999999998852 00
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHHHh-ccC--CCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF-GVA--GIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQ 183 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~ 183 (348)
...+. +.++........++.+++. ... ........++++.+++. .++++.+|||||||||+
T Consensus 412 ---~~~i~-----------~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~ 477 (608)
T 3j16_B 412 ---KLNVS-----------MKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVA 477 (608)
T ss_dssp ---SCCEE-----------EECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHH
T ss_pred ---CCcEE-----------EecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHH
Confidence 01122 2222211111122333221 111 12345567788889886 47789999999999999
Q ss_pred HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC--CEEeeecChhHH
Q 018938 184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH--GKLQLAMPMDKV 261 (348)
Q Consensus 184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~--G~i~~~g~~~~~ 261 (348)
|||||+.+|++|||||||+|||+.++..++++|+++.++.|.|||+||||++++..+||||++|++ |+++..|+++++
T Consensus 478 iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~ 557 (608)
T 3j16_B 478 IVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESL 557 (608)
T ss_dssp HHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEH
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHH
Confidence 999999999999999999999999999999999998766799999999999999999999999996 899999999998
Q ss_pred HHh
Q 018938 262 KEA 264 (348)
Q Consensus 262 ~~~ 264 (348)
.+.
T Consensus 558 ~~~ 560 (608)
T 3j16_B 558 LTG 560 (608)
T ss_dssp HHH
T ss_pred hhh
Confidence 764
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.3e-40 Score=334.41 Aligned_cols=198 Identities=21% Similarity=0.295 Sum_probs=148.5
Q ss_pred eEEE--------eceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceE-----
Q 018938 30 TVEI--------NALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMV----- 96 (348)
Q Consensus 30 ~l~v--------~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i----- 96 (348)
+|++ +||+++|++ ...+|+++| +|++||+++|+||||||||||+|+|+|+++|++|++
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~--------~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~ 153 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGV--------NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWD 153 (607)
T ss_dssp CCEEEEECTTGGGSEEEECST--------TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHH
T ss_pred eEEEecCCccccCCeEEEECC--------CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccc
Confidence 5888 999999952 225899999 999999999999999999999999999999999984
Q ss_pred ----EEcCeeccccccccccCcccccchhh--hhhhhhcCCCccccc---cchHHHHHhccCCCCHHHHHHHHHHcCCC-
Q 018938 97 ----KVLGRSAFHDTALTSSGDLSYLGGEW--RREVAFAGFEVPIQM---DVSAEKMIFGVAGIDPQRRAELIKVLDID- 166 (348)
Q Consensus 97 ----~i~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~l~- 166 (348)
.+.|..+.. +..... ...+++..+...... ..++.+.+... . ..+++.++++.+++.
T Consensus 154 ~~~~~~~G~~~~~-----------~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-~-~~~~~~~~L~~lgL~~ 220 (607)
T 3bk7_A 154 NVIRAFRGNELQN-----------YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-D-EVGKFEEVVKELELEN 220 (607)
T ss_dssp HHHHHTTTSTHHH-----------HHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT-C-CSSCHHHHHHHTTCTT
T ss_pred hhhheeCCEehhh-----------hhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh-H-HHHHHHHHHHHcCCCc
Confidence 122221100 000000 001122212111111 11333332211 1 123467889999986
Q ss_pred -cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEE
Q 018938 167 -LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIV 245 (348)
Q Consensus 167 -~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~ 245 (348)
.++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|+++.+ .|.|||+||||++++..+||+|+
T Consensus 221 ~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl~~~~~~adri~ 299 (607)
T 3bk7_A 221 VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDLAVLDYLSDVIH 299 (607)
T ss_dssp GGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEE
T ss_pred hhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecChHHHHhhCCEEE
Confidence 4678999999999999999999999999999999999999999999999999975 49999999999999999999999
Q ss_pred EEcCC
Q 018938 246 YVAHG 250 (348)
Q Consensus 246 ~l~~G 250 (348)
+|+++
T Consensus 300 vl~~~ 304 (607)
T 3bk7_A 300 VVYGE 304 (607)
T ss_dssp EEESC
T ss_pred EECCC
Confidence 99865
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.3e-39 Score=343.73 Aligned_cols=219 Identities=22% Similarity=0.328 Sum_probs=153.7
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecc---
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF--- 104 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~--- 104 (348)
.++|+++||+|+|++ +.+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|....
T Consensus 669 ~~mL~v~nLs~~Y~g-------~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv 741 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPG-------TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYI 741 (986)
T ss_dssp SEEEEEEEEEECCTT-------CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEE
T ss_pred CceEEEEeeEEEeCC-------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEee
Confidence 358999999999953 2367999999999999999999999999999999999999999999999763100
Q ss_pred cccc---------ccc---------cC-cc--------cccchh---h----------h---------------------
Q 018938 105 HDTA---------LTS---------SG-DL--------SYLGGE---W----------R--------------------- 123 (348)
Q Consensus 105 ~~~~---------~~~---------~~-~~--------~~~~~~---~----------~--------------------- 123 (348)
.+.. ... .+ .. .+...+ + +
T Consensus 742 ~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~ 821 (986)
T 2iw3_A 742 KQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSF 821 (986)
T ss_dssp CHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEE
T ss_pred ccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhh
Confidence 0000 000 00 00 000000 0 0
Q ss_pred ---hhhhhc-----CCCccccccch-------HHH----------HHhcc-CCCCHHHHHHHHHHcCCCc----CccCCC
Q 018938 124 ---REVAFA-----GFEVPIQMDVS-------AEK----------MIFGV-AGIDPQRRAELIKVLDIDL----SWRMHK 173 (348)
Q Consensus 124 ---~~~~~~-----~~~~~~~~~~~-------~~~----------~~~~~-~~~~~~~~~~~l~~l~l~~----~~~~~~ 173 (348)
..+.+. ......+..+. ... ...+. .....+++.++++.+++.. ++++.+
T Consensus 822 sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~ 901 (986)
T 2iw3_A 822 LLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRG 901 (986)
T ss_dssp EEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGG
T ss_pred hhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccc
Confidence 000000 00000000000 000 01111 1223566788999999862 567899
Q ss_pred CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++ .+.|||+||||++++..+||++++|++|+++
T Consensus 902 LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~----~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv 977 (986)
T 2iw3_A 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE----FEGGVIIITHSAEFTKNLTEEVWAVKDGRMT 977 (986)
T ss_dssp CCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHS----CSSEEEEECSCHHHHTTTCCEEECCBTTBCC
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHH----hCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999988864 3679999999999999999999999999998
Q ss_pred eecC
Q 018938 254 LAMP 257 (348)
Q Consensus 254 ~~g~ 257 (348)
..|+
T Consensus 978 ~~G~ 981 (986)
T 2iw3_A 978 PSGH 981 (986)
T ss_dssp C---
T ss_pred EeCC
Confidence 7664
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=5.7e-40 Score=331.15 Aligned_cols=197 Identities=19% Similarity=0.250 Sum_probs=144.5
Q ss_pred EEE-eceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceE---------EEcC
Q 018938 31 VEI-NALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMV---------KVLG 100 (348)
Q Consensus 31 l~v-~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i---------~i~G 100 (348)
.++ +||+|+|++ ...+|+++| +|++||+++|+||||||||||+|+|+|+++|++|++ .++|
T Consensus 21 ~~~~~~ls~~yg~--------~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g 91 (538)
T 1yqt_A 21 EQLEEDCVHRYGV--------NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRG 91 (538)
T ss_dssp ---CCCEEEECST--------TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTT
T ss_pred hhHhcCcEEEECC--------ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCC
Confidence 455 699999952 225899999 999999999999999999999999999999999984 1222
Q ss_pred eeccccccccccCcccccchhh--hhhhhhcCCCcccccc---chHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCC
Q 018938 101 RSAFHDTALTSSGDLSYLGGEW--RREVAFAGFEVPIQMD---VSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHK 173 (348)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~ 173 (348)
..+... ..... ...+++..+....... .+..+.+.... ..+++.++++.+++. .++++.+
T Consensus 92 ~~~~~~-----------~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~--~~~~~~~~l~~lgl~~~~~~~~~~ 158 (538)
T 1yqt_A 92 NELQNY-----------FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD--ETGKLEEVVKALELENVLEREIQH 158 (538)
T ss_dssp STHHHH-----------HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC--SSSCHHHHHHHTTCTTTTTSBGGG
T ss_pred ccHHHH-----------HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh--HHHHHHHHHHHcCCChhhhCChhh
Confidence 211000 00000 0011222121111010 12222221111 123467889999986 4678999
Q ss_pred CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938 174 VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250 (348)
Q Consensus 174 LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 250 (348)
|||||||||+|||||+.+|++|||||||++||+.++..++++|+++.+ .|.|||+||||++++..+||+|++|++|
T Consensus 159 LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999999999999999976 5999999999999999999999999864
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=9.6e-38 Score=329.47 Aligned_cols=195 Identities=22% Similarity=0.291 Sum_probs=153.3
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
.|...|++++|+ ++.+|+++||+|++|++++|+||||||||||+|+|+| |.| .|.+..
T Consensus 435 ~L~~~~ls~~yg---------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~----- 492 (986)
T 2iw3_A 435 DLCNCEFSLAYG---------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQ----- 492 (986)
T ss_dssp EEEEEEEEEEET---------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCT-----
T ss_pred eeEEeeEEEEEC---------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccc-----
Confidence 477779999994 4679999999999999999999999999999999995 222 232110
Q ss_pred cccCcccccchhhhhhhhhcCCCc-cccccchHHHHHh-ccCCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHHHH
Q 018938 110 TSSGDLSYLGGEWRREVAFAGFEV-PIQMDVSAEKMIF-GVAGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQI 184 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~l 184 (348)
... .++|++++. .....++..+++. ...+. .+++.++++.+++. .++++.+|||||||||+|
T Consensus 493 ---~~~---------~~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaL 559 (986)
T 2iw3_A 493 ---EEC---------RTVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLAL 559 (986)
T ss_dssp ---TTS---------CEEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHH
T ss_pred ---cce---------eEEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHH
Confidence 000 122332221 1223344444332 11122 56678899999984 367899999999999999
Q ss_pred HHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe-eecChhHHHH
Q 018938 185 CMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ-LAMPMDKVKE 263 (348)
Q Consensus 185 AraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 263 (348)
||||+.+|++|||||||+|||+.++..++++|++ .|.|||+||||++++..+||++++|++|+++ +.|+++++..
T Consensus 560 ArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 560 ARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999999999999999999999999999986 4899999999999999999999999999997 6899988764
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=5.9e-38 Score=324.70 Aligned_cols=209 Identities=15% Similarity=0.261 Sum_probs=134.3
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHH---------------------HHHhCCCcCCCceEE-------EcCee
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTIL---------------------KIIGGKHMVEPEMVK-------VLGRS 102 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl---------------------k~i~Gl~~~~~G~i~-------i~G~~ 102 (348)
...+|+||||+|++||++||+||||||||||+ +++.|+..|+.|.|. ++|..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35799999999999999999999999999998 889999888855443 33332
Q ss_pred ccccccccccCcccccchh------hhhhhhhcC--CCccccccchHHHHH-h--cc--CCCCH----------HHHHHH
Q 018938 103 AFHDTALTSSGDLSYLGGE------WRREVAFAG--FEVPIQMDVSAEKMI-F--GV--AGIDP----------QRRAEL 159 (348)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~~~~~~~~~~-~--~~--~~~~~----------~~~~~~ 159 (348)
.... ....+.++.+. ....+++.. +.......+++.+.+ + .. ..... .....+
T Consensus 110 ~~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (670)
T 3ux8_A 110 TSRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGF 185 (670)
T ss_dssp ---------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHH
T ss_pred hhcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH
Confidence 1110 00111111110 000111110 000001111222111 1 00 00000 011234
Q ss_pred HHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCCc--EEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecCh
Q 018938 160 IKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFK--VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 234 (348)
Q Consensus 160 l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P~--lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~ 234 (348)
++.+++. .++++.+|||||||||+|||||+.+|+ +|||||||+|||+..+.+++++|+++.+ .|.|||+||||+
T Consensus 186 l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~ 264 (670)
T 3ux8_A 186 LQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDE 264 (670)
T ss_dssp HHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEECCCH
T ss_pred HHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence 7778875 467899999999999999999999998 9999999999999999999999999964 599999999999
Q ss_pred hhhhhhCCEEEEE------cCCEEeeecChhHHHHhh
Q 018938 235 DGLENWPSHIVYV------AHGKLQLAMPMDKVKEAS 265 (348)
Q Consensus 235 ~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~ 265 (348)
+++. .||++++| ++|++++.|+++++....
T Consensus 265 ~~~~-~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~ 300 (670)
T 3ux8_A 265 DTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDP 300 (670)
T ss_dssp HHHH-HCSEEEEECSSSGGGCCSEEEEECHHHHHTCT
T ss_pred HHHh-hCCEEEEecccccccCCEEEEecCHHHHhcCc
Confidence 9876 59999999 899999999999987643
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-37 Score=317.49 Aligned_cols=207 Identities=20% Similarity=0.254 Sum_probs=143.9
Q ss_pred ceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccC-
Q 018938 35 ALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSG- 113 (348)
Q Consensus 35 ~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~- 113 (348)
|++++|+. ....|++++ ++++||++||+||||||||||||+|+|+++|++|+|..... +........+
T Consensus 82 ~~~~~Y~~--------~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~--~~~~~~~~~g~ 150 (608)
T 3j16_B 82 HVTHRYSA--------NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPE--WQEIIKYFRGS 150 (608)
T ss_dssp TEEEECST--------TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSC--HHHHHHHTTTS
T ss_pred CeEEEECC--------CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccc--hhhhhheecCh
Confidence 57888853 345777777 68999999999999999999999999999999998621110 0000000000
Q ss_pred ccc-ccchhhhhhhh--hcCCCcccc------ccchHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHH
Q 018938 114 DLS-YLGGEWRREVA--FAGFEVPIQ------MDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRV 182 (348)
Q Consensus 114 ~~~-~~~~~~~~~~~--~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv 182 (348)
.+. +........+. +..+..... .................+++.++++.+++. .++++.+|||||||||
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv 230 (608)
T 3j16_B 151 ELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRF 230 (608)
T ss_dssp THHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHH
T ss_pred hhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHH
Confidence 000 00000000000 000000000 000111211111222446778899999986 4778999999999999
Q ss_pred HHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 183 QICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 183 ~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
+|||||+.+|++|||||||++||+.++..++++|+++.+ .|.|||+||||++++..+||+|++|++|..+
T Consensus 231 ~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~ 300 (608)
T 3j16_B 231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICVEHDLSVLDYLSDFVCIIYGVPSV 300 (608)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEEEEECSCHHHHHHHCSEEEEEESCTTT
T ss_pred HHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCccc
Confidence 999999999999999999999999999999999999865 4899999999999999999999999887543
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.8e-36 Score=313.66 Aligned_cols=108 Identities=24% Similarity=0.334 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCC---cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 018938 155 RRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATII 228 (348)
Q Consensus 155 ~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P---~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tvi 228 (348)
+..+.+..+++. .++++.+|||||||||+|||||+.+| ++|||||||+|||+.++..++++|+++.+ .|.|||
T Consensus 522 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~tvi 600 (670)
T 3ux8_A 522 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVL 600 (670)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEE
Confidence 445677778875 36788999999999999999999887 59999999999999999999999999975 499999
Q ss_pred EEecChhhhhhhCCEEEEE------cCCEEeeecChhHHHHh
Q 018938 229 YATHIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA 264 (348)
Q Consensus 229 ivtHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~ 264 (348)
+||||++++. .||||++| ++|+|++.|+++++.+.
T Consensus 601 ~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~ 641 (670)
T 3ux8_A 601 VIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 641 (670)
T ss_dssp EECCCHHHHT-TCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred EEeCCHHHHH-hCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence 9999999885 69999999 89999999999998754
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.7e-37 Score=310.14 Aligned_cols=198 Identities=18% Similarity=0.262 Sum_probs=138.6
Q ss_pred eceEEEecCCCCCCCCCCCceeeeeeeEEe-CCCEEEEECCCCCcHHHHHHHHhCCCcCCCceE-----------EEcCe
Q 018938 34 NALKFTYPGIDGHPPPGSTPLINDFTLTLN-AGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMV-----------KVLGR 101 (348)
Q Consensus 34 ~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~-~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i-----------~i~G~ 101 (348)
++.+.+|+. ..|+-..|.+. +||++||+||||||||||+|+|+|+++|++|+| .+.|.
T Consensus 3 ~~~~~~~~~----------~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~ 72 (538)
T 3ozx_A 3 GEVIHRYKV----------NGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGK 72 (538)
T ss_dssp CCEEEESST----------TSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTS
T ss_pred CCCceecCC----------CceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCe
Confidence 467889963 23555556654 999999999999999999999999999999986 23332
Q ss_pred eccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHH
Q 018938 102 SAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQR 179 (348)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqr 179 (348)
.+............. ....+.+..+. +.....+..+...... ..+++.++++.+++. .++++.+||||||
T Consensus 73 ~i~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~v~~~l~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~ 144 (538)
T 3ozx_A 73 EIYNYFKELYSNELK-----IVHKIQYVEYA-SKFLKGTVNEILTKID--ERGKKDEVKELLNMTNLWNKDANILSGGGL 144 (538)
T ss_dssp TTHHHHHHHHTTCCC-----EEEECSCTTGG-GTTCCSBHHHHHHHHC--CSSCHHHHHHHTTCGGGTTSBGGGCCHHHH
T ss_pred eHHHHHHHHhhcccc-----hhhccchhhhh-hhhccCcHHHHhhcch--hHHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence 210000000000000 00001111000 0000112222221111 123456788889886 4778999999999
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 251 (348)
|||+|||||+.+|++|||||||++||+.++..++++|+++. + |+|||+||||++++..+||+|++|++|.
T Consensus 145 Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~-~-g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-K-NKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC-T-TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 99999999999999999999999999999999999999985 4 8999999999999999999999998754
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=1.8e-34 Score=301.74 Aligned_cols=110 Identities=21% Similarity=0.270 Sum_probs=99.3
Q ss_pred HHHHHHHHHcCCCc---CccCCCCCHHHHHHHHHHHHHccC---CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 018938 154 QRRAELIKVLDIDL---SWRMHKVSDGQRRRVQICMGLLKP---FKVLLLDEITVDLDVLARADLLRFLRKECEERGATI 227 (348)
Q Consensus 154 ~~~~~~l~~l~l~~---~~~~~~LSgGqrQRv~lAraL~~~---P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tv 227 (348)
.++.++++.+++.. ++++.+|||||||||+||++|+.+ |+||||||||+|||+..+..++++|+++++ .|.||
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~tV 786 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AGNTV 786 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEE
Confidence 34567888899853 678999999999999999999996 799999999999999999999999999875 59999
Q ss_pred EEEecChhhhhhhCCEEEEE------cCCEEeeecChhHHHHhh
Q 018938 228 IYATHIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEAS 265 (348)
Q Consensus 228 iivtHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~ 265 (348)
|+||||++++ .+||+|++| ++|+|++.|+++++....
T Consensus 787 IvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 787 IAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp EEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred EEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 9999999999 689999999 799999999999987543
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-33 Score=295.55 Aligned_cols=110 Identities=23% Similarity=0.370 Sum_probs=98.6
Q ss_pred HHHHHHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCC---cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEE
Q 018938 154 QRRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATI 227 (348)
Q Consensus 154 ~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P---~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tv 227 (348)
.+..++++.+|+. ..+++.+|||||||||+|||||+.+| +||||||||+|||+..+..++++|+++.+ .|.||
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TV 861 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTV 861 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEE
Confidence 3456778888885 36788999999999999999999875 79999999999999999999999999864 59999
Q ss_pred EEEecChhhhhhhCCEEEEE------cCCEEeeecChhHHHHhh
Q 018938 228 IYATHIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEAS 265 (348)
Q Consensus 228 iivtHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~ 265 (348)
|+||||++++.. ||+|++| ++|+|++.|+++++.+.+
T Consensus 862 IvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~ 904 (916)
T 3pih_A 862 IVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIVATGTPEEIAKNP 904 (916)
T ss_dssp EEECCCHHHHTT-CSEEEEEESSSGGGCCEEEEEESHHHHHSCT
T ss_pred EEEeCCHHHHHh-CCEEEEecCCCCCCCCEEEEEcCHHHHHhCC
Confidence 999999999865 9999999 899999999999998644
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=5.1e-33 Score=291.65 Aligned_cols=108 Identities=24% Similarity=0.334 Sum_probs=97.3
Q ss_pred HHHHHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCC---cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 018938 155 RRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATII 228 (348)
Q Consensus 155 ~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P---~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tvi 228 (348)
+..++++.+++. .++++.+|||||||||+||++|+.+| +||||||||+|||+..+..++++|+++.+ .|.|||
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVI 902 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVL 902 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 345788888885 36789999999999999999999865 99999999999999999999999999865 599999
Q ss_pred EEecChhhhhhhCCEEEEE------cCCEEeeecChhHHHHh
Q 018938 229 YATHIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA 264 (348)
Q Consensus 229 ivtHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~ 264 (348)
+||||++++. +||+|++| ++|++++.|+++++...
T Consensus 903 visHdl~~i~-~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~ 943 (972)
T 2r6f_A 903 VIEHNLDVIK-TADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 943 (972)
T ss_dssp EECCCHHHHT-TCSEEEEECSSSTTSCCSEEEEESHHHHHTC
T ss_pred EEcCCHHHHH-hCCEEEEEcCCCCCCCCEEEEecCHHHHHhC
Confidence 9999999985 79999999 78999999999998764
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=1.4e-32 Score=289.34 Aligned_cols=108 Identities=22% Similarity=0.280 Sum_probs=96.9
Q ss_pred HHHHHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCC---cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEE
Q 018938 155 RRAELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF---KVLLLDEITVDLDVLARADLLRFLRKECEERGATII 228 (348)
Q Consensus 155 ~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P---~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tvi 228 (348)
+..++++.+++. .++++.+|||||||||+||++|+.+| +||||||||+|||+..+..++++|+++.+ .|.|||
T Consensus 842 ~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVI 920 (993)
T 2ygr_A 842 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KGNTVI 920 (993)
T ss_dssp HHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEE
Confidence 345678888875 36788999999999999999999865 99999999999999999999999999865 599999
Q ss_pred EEecChhhhhhhCCEEEEE------cCCEEeeecChhHHHHh
Q 018938 229 YATHIFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA 264 (348)
Q Consensus 229 ivtHd~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~ 264 (348)
+||||++++ .+||+|++| ++|++++.|+++++...
T Consensus 921 visHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~~ 961 (993)
T 2ygr_A 921 VIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAV 961 (993)
T ss_dssp EECCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHHC
T ss_pred EEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHhC
Confidence 999999998 479999999 78999999999998764
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.7e-36 Score=298.34 Aligned_cols=194 Identities=13% Similarity=0.122 Sum_probs=142.1
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc-e-EEEcCeeccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE-M-VKVLGRSAFH 105 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G-~-i~i~G~~~~~ 105 (348)
.++++++||+++| + ++||++++|++++|+||||||||||+|+|+|++.|++| + |.++|..
T Consensus 116 ~~mi~~~nl~~~y---------~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~--- 177 (460)
T 2npi_A 116 HTMKYIYNLHFML---------E------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDP--- 177 (460)
T ss_dssp CTHHHHHHHHHHH---------H------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCT---
T ss_pred cchhhhhhhhehh---------h------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCc---
Confidence 4678899999888 2 69999999999999999999999999999999999999 8 9998721
Q ss_pred cccccccCcccccchhhhhhhhhcCCCccc---cccchHHHHHhccC---C-CCHHHHHHHHHHcCCCcCccCCCCCHHH
Q 018938 106 DTALTSSGDLSYLGGEWRREVAFAGFEVPI---QMDVSAEKMIFGVA---G-IDPQRRAELIKVLDIDLSWRMHKVSDGQ 178 (348)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~-~~~~~~~~~l~~l~l~~~~~~~~LSgGq 178 (348)
...+ +++++.... ...++..+..++.. + ...+++.++++.+|+.....+.+|||||
T Consensus 178 ------~~~i-----------~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq 240 (460)
T 2npi_A 178 ------QQPI-----------FTVPGCISATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLEC 240 (460)
T ss_dssp ------TSCS-----------SSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHH
T ss_pred ------cCCe-----------eeeccchhhcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccchhhhhHHH
Confidence 0112 222222110 01111111112110 1 0112233455566665322378999999
Q ss_pred HHHHHHHHH--HccCCcE----EEeec-cCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh------hhhhhCCE--
Q 018938 179 RRRVQICMG--LLKPFKV----LLLDE-ITVDLDVLARADLLRFLRKECEERGATIIYATHIFD------GLENWPSH-- 243 (348)
Q Consensus 179 rQRv~lAra--L~~~P~l----LlLDE-PtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~------~~~~~~d~-- 243 (348)
||||+|||| |+.+|++ ||||| ||++||+. +..+.+++ ++.+.|+|+||||.+ ++..+||+
T Consensus 241 ~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~----~~~~~tviiVth~~~~~l~~~~~~~~~dr~~ 315 (460)
T 2npi_A 241 ISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHII----EKLNVNIMLVLCSETDPLWEKVKKTFGPELG 315 (460)
T ss_dssp HHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHH----HHTTCCEEEEECCSSCTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHH----HHhCCCEEEEEccCchhhhHHHHHHhccccc
Confidence 999999999 9999999 99999 99999998 44444444 445889999999988 88899999
Q ss_pred ---EEEEc-CCEEeeecChhHHH
Q 018938 244 ---IVYVA-HGKLQLAMPMDKVK 262 (348)
Q Consensus 244 ---v~~l~-~G~i~~~g~~~~~~ 262 (348)
|++|+ +|+++ .++++++.
T Consensus 316 ~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 316 NNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp GGGEEEECCCTTCC-CCCHHHHH
T ss_pred CCEEEEEeCCCcEE-ECCHHHHh
Confidence 99999 99999 88887764
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.97 E-value=2.3e-31 Score=259.95 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHHccCC--cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE----
Q 018938 174 VSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV---- 247 (348)
Q Consensus 174 LSgGqrQRv~lAraL~~~P--~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l---- 247 (348)
|||||||||+||++|+.+| ++|||||||+|||+..+..+.++|+++. .|.|||+||||++++ .+||++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~~~~-~~~d~i~~l~k~~ 372 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLAQIA-ARAHHHYKVEKQV 372 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCHHHH-TTCSEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcHHHH-hhcCeEEEEEEec
Confidence 7999999999999999999 9999999999999999999999999986 389999999999887 579999999
Q ss_pred cCCEEeeec
Q 018938 248 AHGKLQLAM 256 (348)
Q Consensus 248 ~~G~i~~~g 256 (348)
++|+++...
T Consensus 373 ~~G~~~~~~ 381 (415)
T 4aby_A 373 EDGRTVSHV 381 (415)
T ss_dssp ETTEEEEEE
T ss_pred cCCceEEEE
Confidence 999987653
No 66
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.96 E-value=3.4e-31 Score=228.68 Aligned_cols=146 Identities=11% Similarity=0.058 Sum_probs=99.0
Q ss_pred eeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcc--
Q 018938 57 DFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVP-- 134 (348)
Q Consensus 57 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 134 (348)
||||++++||+++|+||||||||||+|++.+- ...+.+ +..+ ++..+...
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~------~~~~~~--------------------d~~~--g~~~~~~~~~ 52 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP------TEVISS--------------------DFCR--GLMSDDENDQ 52 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG------GGEEEH--------------------HHHH--HHHCSSTTCG
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccC------CeEEcc--------------------HHHH--HHhcCcccch
Confidence 68999999999999999999999999986541 111110 0000 11111110
Q ss_pred ccccchHHHHHhccCCCCHHHHHHHHHHcCCC-cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHH------
Q 018938 135 IQMDVSAEKMIFGVAGIDPQRRAELIKVLDID-LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVL------ 207 (348)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~------ 207 (348)
.......... ..........+.. ........|||||||++||||++.+|++|+|||||++||+.
T Consensus 53 ~~~~~~~~~~---------~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~ 123 (171)
T 4gp7_A 53 TVTGAAFDVL---------HYIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTD 123 (171)
T ss_dssp GGHHHHHHHH---------HHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSS
T ss_pred hhHHHHHHHH---------HHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccC
Confidence 0000000000 0011111222332 12234567999999999999999999999999999999999
Q ss_pred ----------HHHHHHHHHHHHHHhcCcEEEEEecChhhhhhh
Q 018938 208 ----------ARADLLRFLRKECEERGATIIYATHIFDGLENW 240 (348)
Q Consensus 208 ----------~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~ 240 (348)
.+..+++.|+++.++ |.|+|++|||++++..+
T Consensus 124 ~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 124 RQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPEEVEEV 165 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHHHHHHE
T ss_pred CCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHHHhhhh
Confidence 668899999888766 99999999999999763
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.96 E-value=1.1e-29 Score=244.77 Aligned_cols=85 Identities=15% Similarity=0.194 Sum_probs=78.0
Q ss_pred CccCCCCCHHHHHHHHHHHHHc------cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhC
Q 018938 168 SWRMHKVSDGQRRRVQICMGLL------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP 241 (348)
Q Consensus 168 ~~~~~~LSgGqrQRv~lAraL~------~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~ 241 (348)
++++.+|||||||||+||+||+ .+|++|||||||+|||+.++..++++|+++.+ .|.|||+||||+++ ...|
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHHH-HTTC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchHH-HHhC
Confidence 3567899999999999999999 79999999999999999999999999999864 59999999999998 5679
Q ss_pred CEEEEEcCCEEee
Q 018938 242 SHIVYVAHGKLQL 254 (348)
Q Consensus 242 d~v~~l~~G~i~~ 254 (348)
|++++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999875
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.95 E-value=3.4e-31 Score=235.98 Aligned_cols=157 Identities=14% Similarity=0.130 Sum_probs=98.6
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcC
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG 130 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (348)
++.+|+++ ++||+++|+||||||||||+|+|+|+ +|++|+|.. ...... . ...++.++|++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~~-~-----------~~~~~~ig~v~ 72 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTRP-A-----------VEAGEKLGFLP 72 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEEC-S-----------CCTTCCCCSSC
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecCC-c-----------hhhhcceEEec
Confidence 46789986 89999999999999999999999999 999999832 211100 0 01123345554
Q ss_pred CCccccc-cc--hHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHH
Q 018938 131 FEVPIQM-DV--SAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVL 207 (348)
Q Consensus 131 ~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~ 207 (348)
+....+. .+ ........ ......+.++++. ++ ||||||+|||||+.+|++|||||||++
T Consensus 73 q~~~enl~~~~~~~~~~~~~--~~~~~~~~~~l~~-gl-----------Gq~qrv~lAraL~~~p~lllLDEPts~---- 134 (208)
T 3b85_A 73 GTLNEKIDPYLRPLHDALRD--MVEPEVIPKLMEA-GI-----------VEVAPLAYMRGRTLNDAFVILDEAQNT---- 134 (208)
T ss_dssp C------CTTTHHHHHHHTT--TSCTTHHHHHHHT-TS-----------EEEEEGGGGTTCCBCSEEEEECSGGGC----
T ss_pred CCHHHHHHHHHHHHHHHHHH--hccHHHHHHHHHh-CC-----------chHHHHHHHHHHhcCCCEEEEeCCccc----
Confidence 4321111 01 00111111 0122334455554 32 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938 208 ARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251 (348)
Q Consensus 208 ~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 251 (348)
++..++++|+++ + .|.||| ||||++++.. ...+++|.
T Consensus 135 ~~~~l~~~l~~l-~-~g~tii-vtHd~~~~~~----~~~~~~G~ 171 (208)
T 3b85_A 135 TPAQMKMFLTRL-G-FGSKMV-VTGDITQVDL----PGGQKSGL 171 (208)
T ss_dssp CHHHHHHHHTTB-C-TTCEEE-EEEC----------------CC
T ss_pred cHHHHHHHHHHh-c-CCCEEE-EECCHHHHhC----cCCCCCcH
Confidence 888999999887 3 489999 9999987653 33345553
No 69
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.94 E-value=6.6e-27 Score=221.60 Aligned_cols=90 Identities=20% Similarity=0.303 Sum_probs=74.5
Q ss_pred CccCCCCCHHHHHHHHHHHHHc----cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCE
Q 018938 168 SWRMHKVSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSH 243 (348)
Q Consensus 168 ~~~~~~LSgGqrQRv~lAraL~----~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~ 243 (348)
+.++.+||||||||++||+||+ .+|++|||||||++||+..+..++++|+++. .|.|||++||+.+ +..+||+
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~~-~~~~~d~ 290 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNKI-VMEAADL 290 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCTT-GGGGCSE
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHH-HHhhCce
Confidence 3457899999999999999997 6899999999999999999999999999873 3789999999965 5678998
Q ss_pred E--EEEcCCEEe-eecChhH
Q 018938 244 I--VYVAHGKLQ-LAMPMDK 260 (348)
Q Consensus 244 v--~~l~~G~i~-~~g~~~~ 260 (348)
+ ++|.+|... .....++
T Consensus 291 ~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 291 LHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEEEESSSCEEEEECCC--
T ss_pred EEEEEEeCCEEEEEEEEcch
Confidence 7 788888653 3344443
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.93 E-value=2.4e-29 Score=245.00 Aligned_cols=174 Identities=12% Similarity=0.148 Sum_probs=127.8
Q ss_pred CceeeeeeeEEeCCC--------------------EEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccc
Q 018938 52 TPLINDFTLTLNAGD--------------------RCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTS 111 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge--------------------~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~ 111 (348)
+.+|++|||+|++|+ +++|+||||||||||+|+|+|++.|++|+|.++|.....
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~------ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM------ 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce------
Confidence 468999999999999 999999999999999999999999999999888754310
Q ss_pred cCcccccchhhhhhhhhcCCCccccccchHHHH-HhccCCCCHHHHHHHHHHcCCCc-CccCCCCCHH--HHHHHHHHHH
Q 018938 112 SGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVAGIDPQRRAELIKVLDIDL-SWRMHKVSDG--QRRRVQICMG 187 (348)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~LSgG--qrQRv~lAra 187 (348)
. .++.+ . +....++..+. .++.. .....++++.+++.. +..+. ||+| |+||++||+|
T Consensus 110 ~---~~v~q-----------~-~~~~~ltv~D~~g~~~~---~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~a 170 (413)
T 1tq4_A 110 E---RHPYK-----------H-PNIPNVVFWDLPGIGST---NFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKA 170 (413)
T ss_dssp C---CEEEE-----------C-SSCTTEEEEECCCGGGS---SCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHH
T ss_pred e---EEecc-----------c-cccCCeeehHhhcccch---HHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHH
Confidence 0 11111 0 00000110000 00111 123567788887653 33344 9999 9999999999
Q ss_pred Hcc----------CCcEEEeeccCCCCCHHHHHHHHHHHHHHHH----hc----CcEEEEEecChhh--hhhhCCEEE-E
Q 018938 188 LLK----------PFKVLLLDEITVDLDVLARADLLRFLRKECE----ER----GATIIYATHIFDG--LENWPSHIV-Y 246 (348)
Q Consensus 188 L~~----------~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~----~~----g~tviivtHd~~~--~~~~~d~v~-~ 246 (348)
|+. +|++++|||||+|||+..+.++++.|+++++ +. ..+|+++||+++. ++.+||++. .
T Consensus 171 L~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~ 250 (413)
T 1tq4_A 171 ISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISD 250 (413)
T ss_dssp HHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHH
T ss_pred HHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHh
Confidence 999 9999999999999999999999999999852 22 3679999999998 999999885 4
Q ss_pred EcCC
Q 018938 247 VAHG 250 (348)
Q Consensus 247 l~~G 250 (348)
|..|
T Consensus 251 Lpeg 254 (413)
T 1tq4_A 251 LPIY 254 (413)
T ss_dssp SCGG
T ss_pred Cccc
Confidence 4444
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.93 E-value=4.1e-27 Score=204.63 Aligned_cols=148 Identities=14% Similarity=0.083 Sum_probs=99.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHh
Q 018938 67 RCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF 146 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (348)
+++|+||||||||||+|+|+|++. +.++|........ ...++.++|..+.......+ +
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~-----------~~~~~~ig~~~~~~~~~~~~------~ 59 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRD-----------PETKKRTGFRIITTEGKKKI------F 59 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC-----------------CCEEEEEETTCCEEE------E
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhcc-----------ccccceeEEEeecCcHHHHH------H
Confidence 689999999999999999999863 4455543210000 00112233332211000000 0
Q ss_pred ccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHH-----HccCCcEEEeec--cCCCCCHHHHHHHHHHHHHH
Q 018938 147 GVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMG-----LLKPFKVLLLDE--ITVDLDVLARADLLRFLRKE 219 (348)
Q Consensus 147 ~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAra-----L~~~P~lLlLDE--PtsgLD~~~~~~l~~~l~~l 219 (348)
....... .-..++++.+||||||||++||+| |+.+|++||||| ||++||+..+..+.+++.+
T Consensus 60 ~~~~~~~----------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~- 128 (178)
T 1ye8_A 60 SSKFFTS----------KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD- 128 (178)
T ss_dssp EETTCCC----------SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC-
T ss_pred HhhcCCc----------cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc-
Confidence 0000000 001356778999999999999996 999999999999 9999999999998888864
Q ss_pred HHhcCcEEEEEe---cChhhhhhhCCEEEEEcCCEEee
Q 018938 220 CEERGATIIYAT---HIFDGLENWPSHIVYVAHGKLQL 254 (348)
Q Consensus 220 ~~~~g~tviivt---Hd~~~~~~~~d~v~~l~~G~i~~ 254 (348)
.+.|+|++| ||++++..+|++ .+|++++
T Consensus 129 ---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 129 ---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp ---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 477788888 599999999998 4566654
No 72
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.92 E-value=3.7e-29 Score=234.47 Aligned_cols=163 Identities=10% Similarity=0.070 Sum_probs=115.4
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL 109 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~ 109 (348)
+|+++||+|+|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+|...+.. ..
T Consensus 101 ~i~~~~vs~~y~----------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~v~q---~~-- 162 (305)
T 2v9p_A 101 FFNYQNIELITF----------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSFANH---KS-- 162 (305)
T ss_dssp HHHHTTCCHHHH----------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECGGGT---TS--
T ss_pred eEEEEEEEEEcC----------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEEecC---cc--
Confidence 478999999993 46999999999999999999999999999999999986 7887543210 00
Q ss_pred cccCcccccchhhhh-hhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHH
Q 018938 110 TSSGDLSYLGGEWRR-EVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGL 188 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL 188 (348)
.+.....+. .+.+. .. .. ....+.++.+ +........|||||||| ||||
T Consensus 163 ------~lf~~ti~~~ni~~~-------~~------------~~-~~~~~~i~~~-L~~gldg~~LSgGqkQR---ARAl 212 (305)
T 2v9p_A 163 ------HFWLASLADTRAALV-------DD------------AT-HACWRYFDTY-LRNALDGYPVSIDRKHK---AAVQ 212 (305)
T ss_dssp ------GGGGGGGTTCSCEEE-------EE------------EC-HHHHHHHHHT-TTGGGGTCCEECCCSSC---CCCE
T ss_pred ------ccccccHHHHhhccC-------cc------------cc-HHHHHHHHHH-hHccCCccCcCHHHHHH---HHHH
Confidence 000000110 11110 00 01 1223344442 22111178999999999 9999
Q ss_pred ccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938 189 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 261 (348)
Q Consensus 189 ~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 261 (348)
+.+|+||| |++||+.++..+.. +||++..+ .+||+| +|++|++++.|+.+++
T Consensus 213 l~~p~iLl----Ts~LD~~~~~~i~~---------------ltH~~~~~-~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 213 IKAPPLLV----TSNIDVQAEDRYLY---------------LHSRVQTF-RFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp ECCCCEEE----EESSCSTTCGGGGG---------------GTTTEEEE-ECCCCC-CCC---CCCCCCHHHH
T ss_pred hCCCCEEE----ECCCCHHHHHHHHH---------------HhCCHHHH-HhCCEE-EEeCCEEEEeCCHHHH
Confidence 99999999 99999998887752 29998876 579999 9999999999999887
No 73
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.92 E-value=6.3e-28 Score=214.22 Aligned_cols=171 Identities=9% Similarity=0.020 Sum_probs=99.9
Q ss_pred CCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhc
Q 018938 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFA 129 (348)
Q Consensus 50 g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (348)
+..+++.| .+|++||+++|+||||||||||+|+|+|+++ .+.+.+........ .+ .++.++|.
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~---~~--------~~~~i~~~ 69 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPR---PG--------EVDGVDYH 69 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCC---TT--------CCBTTTBE
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCc---cc--------ccCCCeeE
Confidence 45678888 7999999999999999999999999999874 34444322110000 00 01122333
Q ss_pred CCCccccccchHHHHH------h---ccCCCCHHHHHHHH----------HHcCCC--cCccCCCCCHHHHHHHHHHHHH
Q 018938 130 GFEVPIQMDVSAEKMI------F---GVAGIDPQRRAELI----------KVLDID--LSWRMHKVSDGQRRRVQICMGL 188 (348)
Q Consensus 130 ~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~l----------~~l~l~--~~~~~~~LSgGqrQRv~lAraL 188 (348)
++....+..++..+.+ + ...+.......+.+ +.+++. .++++.+|| +|
T Consensus 70 ~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l 138 (207)
T 1znw_A 70 FIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VF 138 (207)
T ss_dssp ECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EE
T ss_pred ecCHHHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EE
Confidence 2221111111111100 0 00111222222222 122221 134566676 89
Q ss_pred ccCCcEEEeeccCCCC----CHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 189 LKPFKVLLLDEITVDL----DVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 189 ~~~P~lLlLDEPtsgL----D~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
+.+|++++|||||+++ |+..+..++++++++.++.|.|||+||||++++..+||+|++|.
T Consensus 139 ~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 139 LAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp EECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred EECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 9999999999999998 78899999999999976678999999999999999999999884
No 74
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.91 E-value=4.2e-25 Score=211.71 Aligned_cols=84 Identities=21% Similarity=0.223 Sum_probs=75.9
Q ss_pred cCC-CCCHHHHHHHHHHHHHc---------cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhh
Q 018938 170 RMH-KVSDGQRRRVQICMGLL---------KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLEN 239 (348)
Q Consensus 170 ~~~-~LSgGqrQRv~lAraL~---------~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~ 239 (348)
++. .||||||||++||++|+ .+|+||||||||++||+..+..+++.|.++. .|+|++||+ +.
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th~-~~--- 332 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTEL-AP--- 332 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESSC-CT---
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEec-cc---
Confidence 345 79999999999999999 8999999999999999999999999998752 699999994 44
Q ss_pred hCCEEEEEcCCEEeeecChhHH
Q 018938 240 WPSHIVYVAHGKLQLAMPMDKV 261 (348)
Q Consensus 240 ~~d~v~~l~~G~i~~~g~~~~~ 261 (348)
.||++++|++|+++..|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999988765
No 75
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.91 E-value=9.5e-25 Score=203.89 Aligned_cols=182 Identities=17% Similarity=0.148 Sum_probs=118.8
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc-eEEEcCeeccccccccccCcccccchhhhhhhhhcC
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE-MVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG 130 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G-~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (348)
.++|+++++.|++|++++|+||||||||||+++|+|...+..| .|.+.+.... ...+...+....
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~--------------~~~~~~r~~~~~ 87 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES--------------VEETAEDLIGLH 87 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC--------------HHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC--------------HHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999888877 6654332110 001112222111
Q ss_pred CCcccc--ccchHHHHHhccCCCC-HHHHHHHHHHcCCCcCccCCCCCHHH-HHHHHHHHHHccCCcEEEeeccCC---C
Q 018938 131 FEVPIQ--MDVSAEKMIFGVAGID-PQRRAELIKVLDIDLSWRMHKVSDGQ-RRRVQICMGLLKPFKVLLLDEITV---D 203 (348)
Q Consensus 131 ~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~LSgGq-rQRv~lAraL~~~P~lLlLDEPts---g 203 (348)
+..... ..+....+ .... .+...++++...+.....+..+|.++ +||+. |+++..+|++||+||||+ +
T Consensus 88 ~~~~~~~~~~l~~~~~----~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~ 162 (296)
T 1cr0_A 88 NRVRLRQSDSLKREII----ENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSA 162 (296)
T ss_dssp TTCCGGGCHHHHHHHH----HHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----
T ss_pred cCCChhhccccccCCC----CHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCC
Confidence 111110 01111100 0000 11122333222232333446789998 66776 999999999999999999 5
Q ss_pred ---CCH-HHHHHHHHHHHHHHHhcCcEEEEEecCh--h--------------------hhhhhCCEEEEEcCCEE
Q 018938 204 ---LDV-LARADLLRFLRKECEERGATIIYATHIF--D--------------------GLENWPSHIVYVAHGKL 252 (348)
Q Consensus 204 ---LD~-~~~~~l~~~l~~l~~~~g~tviivtHd~--~--------------------~~~~~~d~v~~l~~G~i 252 (348)
+|. .....+++.|++++++.|+|||++||+. + .+.++||+|++|++|+.
T Consensus 163 ~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 163 SGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 565 6778899999999888899999999995 5 78889999999999875
No 76
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.91 E-value=1.5e-27 Score=213.84 Aligned_cols=155 Identities=12% Similarity=0.021 Sum_probs=91.2
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF 131 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (348)
...|+||||+|++|++++|+||||||||||+++|+|++ | |.|.+ |.+........ . .+..++|.++
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~--~--------~~~~i~~~~~ 75 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKRE--K--------EKEGVDYYFI 75 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCS--S--------CCBTTTBEEC
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCc--c--------cccCCeEEEC
Confidence 45799999999999999999999999999999999987 5 99988 75432211100 0 0111222222
Q ss_pred CccccccchH-HHHHh------ccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHH-----HHHHccCCcEEEeec
Q 018938 132 EVPIQMDVSA-EKMIF------GVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQI-----CMGLLKPFKVLLLDE 199 (348)
Q Consensus 132 ~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~l-----AraL~~~P~lLlLDE 199 (348)
....+...+. .+++. ...+.....+.++++...+.. ...+|||||+||++| |++|+.+|++++|||
T Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~i--l~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde 153 (218)
T 1z6g_A 76 DKTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICL--FEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLS 153 (218)
T ss_dssp CHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEE--EEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHH
T ss_pred CHHHHHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcEE--EEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHH
Confidence 1111110000 00000 001112334555555433211 125789999999999 899999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHh
Q 018938 200 ITVDLDVLARADLLRFLRKECEE 222 (348)
Q Consensus 200 PtsgLD~~~~~~l~~~l~~l~~~ 222 (348)
||+++|..+...+.+.|.++.++
T Consensus 154 ~~~~~d~~~~~~i~~~l~~~~~~ 176 (218)
T 1z6g_A 154 RLLTRNTENQEQIQKRMEQLNIE 176 (218)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988876543
No 77
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.91 E-value=6.3e-24 Score=202.54 Aligned_cols=78 Identities=23% Similarity=0.352 Sum_probs=70.0
Q ss_pred ccCCCCCHHHHH------HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCC
Q 018938 169 WRMHKVSDGQRR------RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS 242 (348)
Q Consensus 169 ~~~~~LSgGqrQ------Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d 242 (348)
+++.+||||||| |+++|++|+.+|++|||||||+|||+..+..++++|+++.++ |.|||+||||.+ +..+||
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~~-~~~~~d 321 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDEE-LKDAAD 321 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCGG-GGGGCS
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChHH-HHHhCC
Confidence 467899999999 678888999999999999999999999999999999998654 889999999965 567899
Q ss_pred EEEEEc
Q 018938 243 HIVYVA 248 (348)
Q Consensus 243 ~v~~l~ 248 (348)
++++|.
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999885
No 78
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.90 E-value=2.3e-26 Score=215.89 Aligned_cols=179 Identities=20% Similarity=0.198 Sum_probs=124.4
Q ss_pred eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhh--hhhhhhcCC
Q 018938 54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEW--RREVAFAGF 131 (348)
Q Consensus 54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 131 (348)
+++++||++++|++++|+||||||||||+++|+|++.|+.|+|.+.|.+.+..... .++ ..+ +..+++.++
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~---~ql----~~~~~~~~i~~v~q 161 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAAS---DQL----EIWAERTGCEIVVA 161 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHH---HHH----HHHHHHHTCEEECC
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHH---HHH----HHHHHhcCceEEEe
Confidence 34678999999999999999999999999999999999999999998765421100 000 012 224555544
Q ss_pred Ccc-ccccchHHHHH-hcc-CCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCc--EEEeeccCCCC
Q 018938 132 EVP-IQMDVSAEKMI-FGV-AGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFK--VLLLDEITVDL 204 (348)
Q Consensus 132 ~~~-~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~--lLlLDEPtsgL 204 (348)
... ..+..+..+.+ +.. .+.+ ..+++.+|+. .++++.+|| |||++|||||+.+|+ +|+|| ||+||
T Consensus 162 ~~~~~~~~~~v~e~l~~~~~~~~d----~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsgl 233 (302)
T 3b9q_A 162 EGDKAKAATVLSKAVKRGKEEGYD----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 233 (302)
T ss_dssp C--CCCHHHHHHHHHHHHHHTTCS----EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGG
T ss_pred cCCccCHHHHHHHHHHHHHHcCCc----chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCc
Confidence 433 33333333322 111 1111 1123344443 234577899 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEEec---------ChhhhhhhCCEEEEEcCCEEe
Q 018938 205 DVLARADLLRFLRKECEERGATIIYATH---------IFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 205 D~~~~~~l~~~l~~l~~~~g~tviivtH---------d~~~~~~~~d~v~~l~~G~i~ 253 (348)
|+..+ ++++.++.|.|+|++|| .++.+..++..|.++..|+.+
T Consensus 234 D~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 234 NMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 99754 24455556899999999 566777788899999999754
No 79
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.90 E-value=9.8e-27 Score=222.34 Aligned_cols=203 Identities=14% Similarity=0.168 Sum_probs=138.0
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.++++++++++.|+. +..+|+++ |+|.+|++++|+||||||||||+++|+|+..|+.|.+.+.|+....-.
T Consensus 43 ~~~i~~~~l~~~~~t--------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~ 113 (347)
T 2obl_A 43 PDPLLRQVIDQPFIL--------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVN 113 (347)
T ss_dssp SCSTTCCCCCSEECC--------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHH
T ss_pred CCCeeecccceecCC--------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHH
Confidence 357899999999952 46799999 999999999999999999999999999999999998888875321000
Q ss_pred cccccCcccccch-hhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHHHH
Q 018938 108 ALTSSGDLSYLGG-EWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRRVQ 183 (348)
Q Consensus 108 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQRv~ 183 (348)
. .+.+... .+.+.+.+..+... .......... ......+.....+.. .-..+..||+|| |||+
T Consensus 114 ~-----~i~~~~~~~~~~~v~~~~~~~~----~~~~r~~~~~---~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~ 180 (347)
T 2obl_A 114 E-----FLALLPQSTLSKCVLVVTTSDR----PALERMKAAF---TATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVG 180 (347)
T ss_dssp H-----HHTTSCHHHHTTEEEEEECTTS----CHHHHHHHHH---HHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHH
T ss_pred H-----HHHhhhhhhhhceEEEEECCCC----CHHHHHHHHH---HHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHH
Confidence 0 0000000 01111112111100 0000000000 000011111111111 114578899999 9999
Q ss_pred HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHH-hcCc-----EEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE-ERGA-----TIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~~g~-----tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
+| +.+|++ |+||||..+..+.+++.++.+ +.|. ||+++|||++ +.+||++++|.+|+|+.+++
T Consensus 181 la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~ 249 (347)
T 2obl_A 181 LA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTRE 249 (347)
T ss_dssp HH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHH
T ss_pred HH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCC
Confidence 99 688887 999999999999999998764 4577 9999999999 67999999999999999998
Q ss_pred hhHHHH
Q 018938 258 MDKVKE 263 (348)
Q Consensus 258 ~~~~~~ 263 (348)
++++..
T Consensus 250 l~~~~~ 255 (347)
T 2obl_A 250 LAEENH 255 (347)
T ss_dssp HHTTTC
T ss_pred HHHcCC
Confidence 877643
No 80
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.90 E-value=1.5e-26 Score=227.53 Aligned_cols=200 Identities=15% Similarity=0.151 Sum_probs=143.4
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee---ccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS---AFH 105 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~---~~~ 105 (348)
++++++++++.|+. +..+|+++ |+|.+|++++|+||||||||||+++|+|+..|+.|.|.+.|+. +..
T Consensus 130 ~~l~~~~v~~~~~t--------g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~ 200 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--------GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKD 200 (438)
T ss_dssp CTTTSCCCCSBCCC--------SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHH
T ss_pred CceEEeccceecCC--------CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHH
Confidence 56899999999952 46799999 9999999999999999999999999999999999999998862 210
Q ss_pred cccccccCcccccchhhhhhhhhcCCC-ccccccchHHHHHhccCCCCHHHHHHHHHHcCCC---cCccCCCCCHHHHHH
Q 018938 106 DTALTSSGDLSYLGGEWRREVAFAGFE-VPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID---LSWRMHKVSDGQRRR 181 (348)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~---~~~~~~~LSgGqrQR 181 (348)
... ... -...+++.+++.++. .+....++..+.... ..+....-+-. .-..+..||+|| ||
T Consensus 201 ~~~----~~~--~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~--------~ae~~~~~~~~v~~~ld~l~~lS~g~-qr 265 (438)
T 2dpy_A 201 FIE----NIL--GPDGRARSVVIAAPADVSPLLRMQGAAYATR--------IAEDFRDRGQHVLLIMDSLTRYAMAQ-RE 265 (438)
T ss_dssp HHH----TTT--HHHHHHTEEEEEECTTSCHHHHHHHHHHHHH--------HHHHHHTTTCEEEEEEECHHHHHHHH-HH
T ss_pred HHH----hhc--cccccCceEEEEECCCCCHHHHHHHHHHHHH--------HHHHHHhCCCCHHHHHHhHHHHHHHH-HH
Confidence 000 000 001233445555442 222233333222110 01111111100 112357899999 99
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHH---hcCc-----EEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECE---ERGA-----TIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~---~~g~-----tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
|+|| +.+|++ |+|||+..+..+.+++.++.+ +.|. ||+++|||++ ..+||++++|.+|+++
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Iv 334 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIV 334 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEE
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEE
Confidence 9999 888988 999999999999999998765 2364 9999999999 6789999999999999
Q ss_pred eecChhHHHH
Q 018938 254 LAMPMDKVKE 263 (348)
Q Consensus 254 ~~g~~~~~~~ 263 (348)
..+++.++..
T Consensus 335 l~~~~~~~~~ 344 (438)
T 2dpy_A 335 LSRRLAEAGH 344 (438)
T ss_dssp ECHHHHHTTC
T ss_pred EeCCHHHccC
Confidence 9998877654
No 81
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.89 E-value=5.1e-26 Score=229.05 Aligned_cols=181 Identities=17% Similarity=0.172 Sum_probs=117.3
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeeeee-EEeCCCEEEEECCCCCcHHHHHHH--HhCCCcCCCceEEEcCeecc
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDFTL-TLNAGDRCLLVGSNGAGKTTILKI--IGGKHMVEPEMVKVLGRSAF 104 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl-~i~~Ge~~~liG~NGsGKSTLlk~--i~Gl~~~~~G~i~i~G~~~~ 104 (348)
.++++.+++.+.+ ++.++|+++|| .|++|++++|+||||||||||+++ ++|+++|++|.|+++|....
T Consensus 10 ~~~~~~~~~~~~~---------~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~ 80 (525)
T 1tf7_A 10 NNNSEHQAIAKMR---------TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETP 80 (525)
T ss_dssp ----CCSSCCEEC---------CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH
T ss_pred CCCcccccccccc---------CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCH
Confidence 3457777776544 34789999999 999999999999999999999999 78999889999999986421
Q ss_pred ccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHH
Q 018938 105 HDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRV 182 (348)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv 182 (348)
... ....+.++|..+....... ++...........++++.+++. .++.+.+||||
T Consensus 81 ~~~------------~~~~~~~g~~~q~~~~~~~------l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g----- 137 (525)
T 1tf7_A 81 QDI------------IKNARSFGWDLAKLVDEGK------LFILDASPDPEGQEVVGGFDLSALIERINYAIQKY----- 137 (525)
T ss_dssp HHH------------HHHHGGGTCCHHHHHHTTS------EEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHH-----
T ss_pred HHH------------HHHHHHcCCChHHhhccCc------EEEEecCcccchhhhhcccCHHHHHHHHHHHHHHc-----
Confidence 100 0112233333221110000 0000000000000011111110 12233445554
Q ss_pred HHHHHHccCCcEEEeeccCC-----CCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhh---------hhhCCEEEEEc
Q 018938 183 QICMGLLKPFKVLLLDEITV-----DLDVLARADLLRFLRKECEERGATIIYATHIFDGL---------ENWPSHIVYVA 248 (348)
Q Consensus 183 ~lAraL~~~P~lLlLDEPts-----gLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~---------~~~~d~v~~l~ 248 (348)
+|++++|||||+ +||+..+..++++++.+++ .|+|||++||+++++ ..+||+|++|+
T Consensus 138 --------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~ 208 (525)
T 1tf7_A 138 --------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 208 (525)
T ss_dssp --------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred --------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEEEEEE
Confidence 588999999998 4699999999999999875 599999999999985 56699999999
Q ss_pred C
Q 018938 249 H 249 (348)
Q Consensus 249 ~ 249 (348)
+
T Consensus 209 ~ 209 (525)
T 1tf7_A 209 N 209 (525)
T ss_dssp E
T ss_pred E
Confidence 8
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.89 E-value=2e-25 Score=212.16 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=105.6
Q ss_pred eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCc
Q 018938 54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEV 133 (348)
Q Consensus 54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (348)
+++++||++++|++++|+||||||||||+++|+|+++|++|.|.++|...... . ..+..+++.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~---------~----~~~~~i~~~---- 222 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVF---------K----HHKNYTQLF---- 222 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCC---------S----SCSSEEEEE----
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccc---------c----cchhEEEEE----
Confidence 78999999999999999999999999999999999999999999987531100 0 000001000
Q ss_pred cccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHH
Q 018938 134 PIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 213 (348)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~ 213 (348)
. . |||+||++||+||..+|++|||||||+. +++
T Consensus 223 ---------------~-----------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~ 255 (330)
T 2pt7_A 223 ---------------F-----------------------G--GNITSADCLKSCLRMRPDRIILGELRSS-------EAY 255 (330)
T ss_dssp ---------------C-----------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHH
T ss_pred ---------------e-----------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHH
Confidence 0 0 8999999999999999999999999982 456
Q ss_pred HHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEE
Q 018938 214 RFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKL 252 (348)
Q Consensus 214 ~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 252 (348)
++|+.+. ..+.|+|++||+.+ +...|||+++|.+|..
T Consensus 256 ~~l~~~~-~g~~tvi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 256 DFYNVLC-SGHKGTLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHH-TTCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred HHHHHHh-cCCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence 7777764 32458999999998 7778999999988863
No 83
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.89 E-value=1.2e-23 Score=224.95 Aligned_cols=175 Identities=15% Similarity=0.217 Sum_probs=116.2
Q ss_pred CCeEEEec-----eEEEecCCCCCCCCCCCceeeeeeeEEeC-------CCEEEEECCCCCcHHHHHHHHhCCCcCCCce
Q 018938 28 KPTVEINA-----LKFTYPGIDGHPPPGSTPLINDFTLTLNA-------GDRCLLVGSNGAGKTTILKIIGGKHMVEPEM 95 (348)
Q Consensus 28 ~~~l~v~~-----ls~~y~~~~~~~~~g~~~~l~~vsl~i~~-------Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~ 95 (348)
.++|+++| |++.|. ++..+++|++|++++ |++++|+||||||||||||+| |++.+-.
T Consensus 748 ~~~l~i~~~rHP~l~~~~~--------~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~a-- 816 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFF--------GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMA-- 816 (1022)
T ss_dssp CCCEEEEEECCCC--------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHH--
T ss_pred CceEEEEeccccEEEEEec--------CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHh--
Confidence 35799999 999994 246799999999987 999999999999999999999 8754210
Q ss_pred EEEcCeeccccccccccCcccccchhhhhhhh-hcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCC
Q 018938 96 VKVLGRSAFHDTALTSSGDLSYLGGEWRREVA-FAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKV 174 (348)
Q Consensus 96 i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~L 174 (348)
.++ |+++... .++..+.++...+.. + ......+++
T Consensus 817 -----------------------------qiG~~Vpq~~~---~l~v~d~I~~rig~~-d-----------~~~~~~stf 852 (1022)
T 2o8b_B 817 -----------------------------QMGCYVPAEVC---RLTPIDRVFTRLGAS-D-----------RIMSGESTF 852 (1022)
T ss_dssp -----------------------------TTTCCEESSEE---EECCCSBEEEECC---------------------CHH
T ss_pred -----------------------------heeEEeccCcC---CCCHHHHHHHHcCCH-H-----------HHhhchhhh
Confidence 111 2211110 000000000000100 0 011234678
Q ss_pred CHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHH-HHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEe
Q 018938 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR-ADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~-~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 253 (348)
|+++++ +++|++++.+|+++||||||+|+|+... ..++.+|+.+.++.|.++|++||+++++..+||++.++ +|++.
T Consensus 853 ~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 853 FVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp HHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred HHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 888775 9999999999999999999999999874 55788998887655899999999999999999999887 58876
Q ss_pred --eecChh
Q 018938 254 --LAMPMD 259 (348)
Q Consensus 254 --~~g~~~ 259 (348)
..++++
T Consensus 931 ~~~~~~~~ 938 (1022)
T 2o8b_B 931 CMVENECE 938 (1022)
T ss_dssp EC------
T ss_pred EEEecCcc
Confidence 344443
No 84
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.88 E-value=2.5e-25 Score=212.98 Aligned_cols=177 Identities=21% Similarity=0.215 Sum_probs=123.4
Q ss_pred eeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhh--hhhhhhcCCCc
Q 018938 56 NDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEW--RREVAFAGFEV 133 (348)
Q Consensus 56 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 133 (348)
.++||++++|++++|+||||||||||+++|+|++.|+.|+|.+.|.+.+..... .++ ..+ +..+++..+..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~---eql----~~~~~r~~i~~v~q~~ 220 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAAS---DQL----EIWAERTGCEIVVAEG 220 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHH---HHH----HHHHHHHTCEEECCSS
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchh---HHH----HHHHHhcCeEEEEecc
Confidence 568999999999999999999999999999999999999999998765421100 000 011 23455554443
Q ss_pred c-ccccchHHHHH-hcc-CCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCc--EEEeeccCCCCCH
Q 018938 134 P-IQMDVSAEKMI-FGV-AGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFK--VLLLDEITVDLDV 206 (348)
Q Consensus 134 ~-~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~--lLlLDEPtsgLD~ 206 (348)
. ..+..+..+.+ +.. ...+ ..+++.+|+. .++.+.+|| +||++|||||+.+|+ +|+|| ||+|||+
T Consensus 221 ~~~~p~~tv~e~l~~~~~~~~d----~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~ 292 (359)
T 2og2_A 221 DKAKAATVLSKAVKRGKEEGYD----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNM 292 (359)
T ss_dssp SSCCHHHHHHHHHHHHHHTTCS----EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGG
T ss_pred cccChhhhHHHHHHHHHhCCCH----HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCH
Confidence 3 33333333322 111 1111 1123344543 234577899 999999999999999 99999 9999999
Q ss_pred HHHHHHHHHHHHHHHhcCcEEEEEec---------ChhhhhhhCCEEEEEcCCEEe
Q 018938 207 LARADLLRFLRKECEERGATIIYATH---------IFDGLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 207 ~~~~~l~~~l~~l~~~~g~tviivtH---------d~~~~~~~~d~v~~l~~G~i~ 253 (348)
..+. +++.+..|.|+|++|| .+..+..++..|.++..|+.+
T Consensus 293 ~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 293 LPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp HHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred HHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 7653 3444456899999999 456677788899999999754
No 85
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.88 E-value=2.9e-23 Score=208.97 Aligned_cols=151 Identities=10% Similarity=0.011 Sum_probs=114.2
Q ss_pred eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCce--EEEcCeeccccccccccCcccccchhhhhhhhhcCCCcccc
Q 018938 59 TLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEM--VKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQ 136 (348)
Q Consensus 59 sl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~--i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (348)
+..|++|++++|+||||||||||+++++|...+. |. +.+.++... ..+....
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~---------------~~l~~~~---------- 328 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESR---------------AQLLRNA---------- 328 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCH---------------HHHHHHH----------
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCH---------------HHHHHHH----------
Confidence 5589999999999999999999999999987664 43 233221100 0000000
Q ss_pred ccchHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHH-----HH
Q 018938 137 MDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVL-----AR 209 (348)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~-----~~ 209 (348)
.. .+++.+ ++ ...++. .+.++.+|||||+||+++|+++..+|++||+| ||++||+. .+
T Consensus 329 ---------~~-~g~~~~---~~-~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 329 ---------YS-WGMDFE---EM-ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp ---------HT-TSCCHH---HH-HHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred ---------HH-cCCCHH---HH-HhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 00 011211 11 123332 35567899999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCh----------hhhhhhCCEEEEEcCCE
Q 018938 210 ADLLRFLRKECEERGATIIYATHIF----------DGLENWPSHIVYVAHGK 251 (348)
Q Consensus 210 ~~l~~~l~~l~~~~g~tviivtHd~----------~~~~~~~d~v~~l~~G~ 251 (348)
..+.++++.++ +.|.|||++||+. ..+..+||+|++|++|+
T Consensus 394 ~~i~~ll~~l~-~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAK-QEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHH-HTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHH-hCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999999875 5699999999999 88889999999999887
No 86
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.88 E-value=8.5e-24 Score=223.82 Aligned_cols=153 Identities=14% Similarity=0.127 Sum_probs=110.4
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHH--------hCCCcCCCceEEEcCeeccccccccccCcccccchhh
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKII--------GGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEW 122 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i--------~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~ 122 (348)
...+++|++|++++|++++|+||||||||||||+| .|...|..+..
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------------------------- 701 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------------------------- 701 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------------------------
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------------------------
Confidence 45789999999999999999999999999999999 44322211100
Q ss_pred hhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHH--ccCCcEEEeecc
Q 018938 123 RREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGL--LKPFKVLLLDEI 200 (348)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL--~~~P~lLlLDEP 200 (348)
+... . +++..+++. +.....+|+|+++++.+|++| +.+|+++|||||
T Consensus 702 ---~~~~--d-------------------------~i~~~ig~~-d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp 750 (934)
T 3thx_A 702 ---VSIV--D-------------------------CILARVGAG-DSQLKGVSTFMAEMLETASILRSATKDSLIIIDEL 750 (934)
T ss_dssp ---EECC--S-------------------------EEEEECC----------CHHHHHHHHHHHHHHHCCTTCEEEEESC
T ss_pred ---chHH--H-------------------------HHHHhcCch-hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCC
Confidence 0000 0 000011110 112346788888888888888 999999999999
Q ss_pred CCCCCHHHHHHH-HHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHH
Q 018938 201 TVDLDVLARADL-LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKV 261 (348)
Q Consensus 201 tsgLD~~~~~~l-~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 261 (348)
|+|||+.....+ +.+++.+.++.|+++|++||+.+.+ .+||++..+.+|++...++.+++
T Consensus 751 ~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 751 GRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGGTCTTEEEEEEEEEEETTEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhcccceeEeeEEEEEecCCcE
Confidence 999999988888 6777777655699999999997655 68999999999999877766554
No 87
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.87 E-value=7.6e-24 Score=191.74 Aligned_cols=183 Identities=18% Similarity=0.105 Sum_probs=105.1
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeee--EEeCCCEEEEECCCCCcHHHHHHHHh--CCCcCCCceEEEcCeeccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTL--TLNAGDRCLLVGSNGAGKTTILKIIG--GKHMVEPEMVKVLGRSAFH 105 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl--~i~~Ge~~~liG~NGsGKSTLlk~i~--Gl~~~~~G~i~i~G~~~~~ 105 (348)
++++++++..|+ .|+.+ + .|++|++++|+||||||||||+++|+ |+..+..+.+.+.+.....
T Consensus 6 ~~~~~~i~tg~~------------~lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~ 72 (251)
T 2ehv_A 6 YQPVRRVKSGIP------------GFDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR 72 (251)
T ss_dssp --CCCEECCSCT------------TTGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH
T ss_pred ccccceeecCCH------------hHHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH
Confidence 466677766553 34443 2 78999999999999999999999999 6545666666665542110
Q ss_pred cccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHH
Q 018938 106 DTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQIC 185 (348)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lA 185 (348)
. . ....+.+++..+.......+.. ............ . .........+.++......+
T Consensus 73 ~-----------~-~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~ 129 (251)
T 2ehv_A 73 D-----------L-RREMASFGWDFEKYEKEGKIAI------VDGVSSVVGLPS-E----EKFVLEDRFNVDNFLRYIYR 129 (251)
T ss_dssp H-----------H-HHHHHTTTCCHHHHHHTTSEEE------EC------------------------CCHHHHHHHHHH
T ss_pred H-----------H-HHHHHHcCCChHHHhhcCCEEE------EEcccccccccc-c----cceeccCcccHHHHHHHHHH
Confidence 0 0 0011122221111000000000 000000000000 0 00011123345555555555
Q ss_pred HHHccCCcEEEeeccCCCCC-----HHHHHHHHHHHHHHHHhcCcEEEEEecChhhh---------hhhC-CEEEEEcC
Q 018938 186 MGLLKPFKVLLLDEITVDLD-----VLARADLLRFLRKECEERGATIIYATHIFDGL---------ENWP-SHIVYVAH 249 (348)
Q Consensus 186 raL~~~P~lLlLDEPtsgLD-----~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~---------~~~~-d~v~~l~~ 249 (348)
..-..+|++++|||||++|| +..+..+.++++.+. +.|+|||++||+++++ ..+| |+|++|+.
T Consensus 130 ~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~-~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 130 VVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILL-EMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHH-HHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHH-HCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 55578999999999999998 677777999998875 4599999999999998 6788 99999963
No 88
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.87 E-value=4.7e-22 Score=167.46 Aligned_cols=83 Identities=22% Similarity=0.315 Sum_probs=74.2
Q ss_pred CccCCCCCHHHHHHHHHH------HHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhC
Q 018938 168 SWRMHKVSDGQRRRVQIC------MGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP 241 (348)
Q Consensus 168 ~~~~~~LSgGqrQRv~lA------raL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~ 241 (348)
++++.+||||||||++|| |||+.+|++|||||||+|||+.++..+.+.|.++.++ |.|||+||||+ .+..+|
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~-~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE-ELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCG-GGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChH-HHHHhC
Confidence 467899999999999876 8999999999999999999999999999999998644 89999999999 567899
Q ss_pred CEEEEE--cCCEE
Q 018938 242 SHIVYV--AHGKL 252 (348)
Q Consensus 242 d~v~~l--~~G~i 252 (348)
|++++| .+|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45643
No 89
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.86 E-value=6.2e-22 Score=176.78 Aligned_cols=173 Identities=12% Similarity=0.091 Sum_probs=116.4
Q ss_pred CCceeeeeee-EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhc
Q 018938 51 STPLINDFTL-TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFA 129 (348)
Q Consensus 51 ~~~~l~~vsl-~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (348)
+.+.|+++.+ .+++|++++|+||||||||||++.|++...+..|.+.+.+...... . +. .....+++.
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~-------~---~~-~~~~~~~~~ 76 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRD-------S---II-RQAKQFNWD 76 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHH-------H---HH-HHHHHTTCC
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHH-------H---HH-HHHHHhcch
Confidence 3578999998 8999999999999999999999999987777777776654321000 0 00 000111111
Q ss_pred CCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCc--EEEeeccCCCC--C
Q 018938 130 GFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFK--VLLLDEITVDL--D 205 (348)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~--lLlLDEPtsgL--D 205 (348)
.+..... .+ ........ . ++ ........|.++.++...+.+...+|+ +||+||||+.+ |
T Consensus 77 ~~~~~~~-~~------~~~~~~~~-~-------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d 139 (235)
T 2w0m_A 77 FEEYIEK-KL------IIIDALMK-E-------KE--DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK 139 (235)
T ss_dssp CGGGBTT-TE------EEEECCC--------------CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC
T ss_pred HHHHhhC-CE------EEEecccc-c-------cC--ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC
Confidence 1100000 00 00000000 0 00 011123459999999988888888999 99999999888 9
Q ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEecCh--------hhhhhhCCEEEEEcCCE
Q 018938 206 VLARADLLRFLRKECEERGATIIYATHIF--------DGLENWPSHIVYVAHGK 251 (348)
Q Consensus 206 ~~~~~~l~~~l~~l~~~~g~tviivtHd~--------~~~~~~~d~v~~l~~G~ 251 (348)
+..+..+++.|++++++.|.|||++||+. ..+..+||+|++|+...
T Consensus 140 ~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 140 PAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp GGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 99999999999999888899999999999 56889999999998653
No 90
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.86 E-value=1e-21 Score=207.17 Aligned_cols=107 Identities=21% Similarity=0.375 Sum_probs=95.4
Q ss_pred HHHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCCc--EEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Q 018938 158 ELIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPFK--VLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232 (348)
Q Consensus 158 ~~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P~--lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtH 232 (348)
+.+..+|+. .++++.+|||||+|||+|||||+.+|+ +|||||||+|||+..+..++++|+++. +.|.|||+|||
T Consensus 446 ~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~-~~G~TvivVtH 524 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLR-DLGNTVIVVEH 524 (916)
T ss_dssp HHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTT-TTTCEEEEECC
T ss_pred HHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHH-hcCCEEEEEeC
Confidence 345556764 467899999999999999999999887 999999999999999999999999986 45999999999
Q ss_pred ChhhhhhhCCEEEEE------cCCEEeeecChhHHHHhhh
Q 018938 233 IFDGLENWPSHIVYV------AHGKLQLAMPMDKVKEASK 266 (348)
Q Consensus 233 d~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~~~ 266 (348)
|++++.. ||+|++| ++|++++.|+++++.....
T Consensus 525 d~~~~~~-aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~~ 563 (916)
T 3pih_A 525 DEEVIRN-ADHIIDIGPGGGTNGGRVVFQGTVDELLKNPD 563 (916)
T ss_dssp CHHHHHT-CSEEEEEESSSGGGCSEEEEEECHHHHHHSCT
T ss_pred CHHHHHh-CCEEEEEcCCcccCCCEEEEeechhhhhcCch
Confidence 9999865 9999999 9999999999999876543
No 91
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.85 E-value=3.8e-22 Score=210.74 Aligned_cols=143 Identities=13% Similarity=0.174 Sum_probs=98.6
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcC
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG 130 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (348)
+..+++|+||++++|++++|+||||||||||||+|+++..... .|. +++.. ...++..
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq-----~g~---------------~vpa~-~~~i~~~- 716 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ-----IGS---------------YVPAE-EATIGIV- 716 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH-----HTC---------------CBSSS-EEEEECC-
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh-----cCc---------------cccch-hhhhhHH-
Confidence 4679999999999999999999999999999999976421100 000 00000 0000000
Q ss_pred CCccccccchHHHHHhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHH
Q 018938 131 FEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLA 208 (348)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~ 208 (348)
. . ++..+++. .....+++|+||+|++.|+++ +.+|+++||||||+|||+..
T Consensus 717 -d-~------------------------i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~ 769 (918)
T 3thx_B 717 -D-G------------------------IFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHD 769 (918)
T ss_dssp -S-E------------------------EEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHH
T ss_pred -H-H------------------------HHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHH
Confidence 0 0 00011111 123457899999999999999 89999999999999999999
Q ss_pred HHHHH-HHHHHHHHhcCcEEEEEecChhhhhhhCCE
Q 018938 209 RADLL-RFLRKECEERGATIIYATHIFDGLENWPSH 243 (348)
Q Consensus 209 ~~~l~-~~l~~l~~~~g~tviivtHd~~~~~~~~d~ 243 (348)
...+. .+++.+.++.|.|||++|||++.+. +||+
T Consensus 770 ~~~i~~~il~~L~~~~g~tvl~vTH~~el~~-l~~~ 804 (918)
T 3thx_B 770 GIAIAYATLEYFIRDVKSLTLFVTHYPPVCE-LEKN 804 (918)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH-HHhh
Confidence 98887 7777776656999999999988764 5543
No 92
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.85 E-value=1.6e-24 Score=204.24 Aligned_cols=174 Identities=9% Similarity=0.053 Sum_probs=114.8
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeE-----------------------EeCCCEEEEECCCCCcHHHHHHHH
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLT-----------------------LNAGDRCLLVGSNGAGKTTILKII 85 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~-----------------------i~~Ge~~~liG~NGsGKSTLlk~i 85 (348)
..|+++||++.|. +++++++|. +++|+++||+||||||||||+++|
T Consensus 42 ~~i~~~~v~~~y~-----------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L 110 (312)
T 3aez_A 42 EQIDLLEVEEVYL-----------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVL 110 (312)
T ss_dssp CCCCHHHHHHTHH-----------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHH
T ss_pred CeEEeeehhhhhh-----------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHH
Confidence 3689999999993 577777765 899999999999999999999999
Q ss_pred hCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH-h----ccC-CCCHHHHHHH
Q 018938 86 GGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI-F----GVA-GIDPQRRAEL 159 (348)
Q Consensus 86 ~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~-~~~~~~~~~~ 159 (348)
+|++.|..|.- .+.++. ++..+... +..+.. + +.. ..+.+...++
T Consensus 111 ~gll~~~~G~~-----------------~v~~v~-----------qd~~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~ 161 (312)
T 3aez_A 111 QALLARWDHHP-----------------RVDLVT-----------TDGFLYPN-AELQRRNLMHRKGFPESYNRRALMRF 161 (312)
T ss_dssp HHHHHTSTTCC-----------------CEEEEE-----------GGGGBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHH
T ss_pred HhhccccCCCC-----------------eEEEEe-----------cCccCCcc-cHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 99988876530 011111 11111111 111111 0 111 1234556677
Q ss_pred HHHcCCCc-CccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhh-
Q 018938 160 IKVLDIDL-SWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL- 237 (348)
Q Consensus 160 l~~l~l~~-~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~- 237 (348)
++.++-.. +.++.+|||||+||+++|+|++.+|+|||||||+..+|+.. ..+ .+..+ .+|+++|+.+..
T Consensus 162 L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l---~~~~D-~~I~V~a~~~~~~ 232 (312)
T 3aez_A 162 VTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV---SDLFD-FSLYVDARIEDIE 232 (312)
T ss_dssp HHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG---GGGCS-EEEEEEECHHHHH
T ss_pred HHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH---HHhcC-cEEEEECCHHHHH
Confidence 77776322 35678999999999999999999999999999999998521 112 22233 457777887664
Q ss_pred hhhCCEEEEEcCCE
Q 018938 238 ENWPSHIVYVAHGK 251 (348)
Q Consensus 238 ~~~~d~v~~l~~G~ 251 (348)
.++++|.+.+.+|+
T Consensus 233 ~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 233 QWYVSRFLAMRTTA 246 (312)
T ss_dssp HHHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHhcc
Confidence 33455655555544
No 93
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.84 E-value=2.9e-21 Score=172.53 Aligned_cols=150 Identities=19% Similarity=0.279 Sum_probs=91.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc-------eEEEcCeeccccccccccCcccccchhhhhhhhhcCCCc
Q 018938 61 TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE-------MVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEV 133 (348)
Q Consensus 61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G-------~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (348)
-|++|++++|+||||||||||+++|+|...+.++ .+++++..... ...+.+..+..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~-----------------~~~i~~~~~~~ 83 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-----------------PERIREIAQNR 83 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC-----------------HHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC-----------------HHHHHHHHHHc
Confidence 6899999999999999999999999996555433 33333321000 00111110000
Q ss_pred cccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHH-HHHHHHHHHcc-------CCcEEEeeccCCCCC
Q 018938 134 PIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQR-RRVQICMGLLK-------PFKVLLLDEITVDLD 205 (348)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqr-QRv~lAraL~~-------~P~lLlLDEPtsgLD 205 (348)
..... .+.+.+. ....++.+++ +.+..+++++. +|++|++||||+++|
T Consensus 84 ----------------~~~~~---~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 84 ----------------GLDPD---EVLKHIY-----VARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp ----------------TSCHH---HHHHTEE-----EEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred ----------------CCCHH---HHhhcEE-----EEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 01111 1111111 1122333333 33455555544 999999999999999
Q ss_pred HHH------------HHHHHHHHHHHHHhcCcEEEEEecChhh----hhhhCCEEEEEcCCE
Q 018938 206 VLA------------RADLLRFLRKECEERGATIIYATHIFDG----LENWPSHIVYVAHGK 251 (348)
Q Consensus 206 ~~~------------~~~l~~~l~~l~~~~g~tviivtHd~~~----~~~~~d~v~~l~~G~ 251 (348)
+.. ...+++.|.+++++.|+|||++||+... +..+||++++|++|+
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 842 2378888888887789999999995554 999999999998753
No 94
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.83 E-value=1.2e-20 Score=198.94 Aligned_cols=104 Identities=21% Similarity=0.309 Sum_probs=94.0
Q ss_pred HHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccC--CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Q 018938 159 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKP--FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 233 (348)
Q Consensus 159 ~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~--P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd 233 (348)
.+..+|+. +++.+.+|||||+|||+||++|+.+ |++|||||||++||+...+.++++|+++. +.|.|||+||||
T Consensus 504 ~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr-~~G~TVIvVeHd 582 (993)
T 2ygr_A 504 FLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLR-DLGNTLIVVEHD 582 (993)
T ss_dssp HHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHH-HTTCEEEEECCC
T ss_pred HHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHH-HcCCEEEEECCC
Confidence 35556764 5788999999999999999999998 59999999999999999999999999985 569999999999
Q ss_pred hhhhhhhCCEEEEE------cCCEEeeecChhHHHHh
Q 018938 234 FDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA 264 (348)
Q Consensus 234 ~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~ 264 (348)
++++. .||+|++| ++|++++.|+++++...
T Consensus 583 l~~i~-~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 583 EDTIE-HADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp HHHHH-TCSEEEEECSSSGGGCCSCCEEECHHHHHHC
T ss_pred HHHHH-hCCEEEEecCccccCCCEEEEeeCHHHhhhh
Confidence 99886 79999999 79999999999998764
No 95
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.83 E-value=7.5e-21 Score=199.77 Aligned_cols=103 Identities=19% Similarity=0.290 Sum_probs=93.8
Q ss_pred HHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCC--cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Q 018938 159 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 233 (348)
Q Consensus 159 ~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P--~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd 233 (348)
.+..+|+. +++.+.+|||||+|||+||++|..+| ++|||||||+|||+.....++++|+++. +.|.|||+||||
T Consensus 487 ~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr-~~G~TVIvVeHd 565 (972)
T 2r6f_A 487 FLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR-DLGNTLIVVEHD 565 (972)
T ss_dssp HHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-TTTCEEEEECCC
T ss_pred HhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHH-hCCCEEEEEecC
Confidence 35667775 47889999999999999999999985 9999999999999999999999999985 579999999999
Q ss_pred hhhhhhhCCEEEEE------cCCEEeeecChhHHHH
Q 018938 234 FDGLENWPSHIVYV------AHGKLQLAMPMDKVKE 263 (348)
Q Consensus 234 ~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~ 263 (348)
++++. .||+|++| ++|++++.|+++++..
T Consensus 566 l~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 566 EDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp HHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred HHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 99886 69999999 7999999999998865
No 96
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.83 E-value=2.4e-20 Score=183.17 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=67.3
Q ss_pred CCCCHHHHHHHHHHHHHc----cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 172 HKVSDGQRRRVQICMGLL----KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 172 ~~LSgGqrQRv~lAraL~----~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
..||||||||++||++|+ .+|++|||||||++||+..+..+.++|+++.+ .+.++|++||+...+ ..||+++.|
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~~~~-~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNTMF-EKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHHHH-TTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCHHHH-HhCCEEEEE
Confidence 459999999999999999 68999999999999999999999999998753 378999999997665 579999988
Q ss_pred c
Q 018938 248 A 248 (348)
Q Consensus 248 ~ 248 (348)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 5
No 97
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.83 E-value=1.4e-23 Score=194.07 Aligned_cols=146 Identities=14% Similarity=0.109 Sum_probs=80.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHH-H
Q 018938 67 RCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-I 145 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 145 (348)
.++|+||||||||||+|+|+|+..|++|+|.++|.++.... . ++.+++..+.......+++.+. .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~---~-----------~~~i~~v~q~~~~~~~ltv~d~~~ 69 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTV---E-----------IKAIGHVIEEGGVKMKLTVIDTPG 69 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCC---S-----------CCEEEESCC----CCEEEEECCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcce---e-----------eeeeEEEeecCCCcCCceEEechh
Confidence 47999999999999999999999999999999987542111 0 1122333222222222221111 1
Q ss_pred hcc--C-CCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHh
Q 018938 146 FGV--A-GIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 222 (348)
Q Consensus 146 ~~~--~-~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~ 222 (348)
++. . ....+.+.+.+.. -..+..+.+|||||+||++||||++. +++||||+++||+.. .++++.+. +
T Consensus 70 ~g~~~~~~~~~~~i~~~~~~--~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~-~ 139 (270)
T 3sop_A 70 FGDQINNENCWEPIEKYINE--QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLS-K 139 (270)
T ss_dssp --CCSBCTTCSHHHHHHHHH--HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHH-T
T ss_pred hhhhcccHHHHHHHHHHHHH--HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHH-h
Confidence 111 1 1111222222220 00234567899999999999999886 999999999999976 44555554 3
Q ss_pred cCcEEEEEecChhhh
Q 018938 223 RGATIIYATHIFDGL 237 (348)
Q Consensus 223 ~g~tviivtHd~~~~ 237 (348)
. .+||+|.|..+.+
T Consensus 140 ~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 140 V-VNIIPVIAKADTM 153 (270)
T ss_dssp T-SEEEEEETTGGGS
T ss_pred c-CcEEEEEeccccC
Confidence 3 7999998886644
No 98
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.83 E-value=3.5e-22 Score=181.74 Aligned_cols=161 Identities=14% Similarity=0.057 Sum_probs=89.6
Q ss_pred CCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhc
Q 018938 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFA 129 (348)
Q Consensus 50 g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (348)
+++++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ . .++.++++
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~--------~-------------~~~~i~~v 64 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE--------Q-------------RQRKVVIL 64 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC--------G-------------GGCSEEEE
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc--------c-------------cCCceEEE
Confidence 4578999999999999999999999999999999999964 332211 0 01111222
Q ss_pred CCCccccccchHHHHH---hccCC------CCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeecc
Q 018938 130 GFEVPIQMDVSAEKMI---FGVAG------IDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI 200 (348)
Q Consensus 130 ~~~~~~~~~~~~~~~~---~~~~~------~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEP 200 (348)
++. .++..++..+.. .+... .+.+...+.++.+.-....++..||+||+||+++ ++++.+|+++|||||
T Consensus 65 ~~d-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 65 SQD-RFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp EGG-GGBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred eCC-cCccccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCc
Confidence 111 111122222211 11111 1223344555544223456788999999999988 688999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecCh-hhhhhhCCEEEEEcCCE
Q 018938 201 TVDLDVLARADLLRFLRKECEERGATIIYATHIF-DGLENWPSHIVYVAHGK 251 (348)
Q Consensus 201 tsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~ 251 (348)
....|.. +.++ .+.+|+++||+. .....+++++ ++|+
T Consensus 143 ~~~~~~~--------l~~~---~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 143 LVFYSQE--------IRDM---FHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp TTTTSHH--------HHTT---CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred cccccHH--------HHHh---cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 9888863 2222 378999999974 4444555544 5564
No 99
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.83 E-value=4.1e-22 Score=183.23 Aligned_cols=131 Identities=15% Similarity=0.127 Sum_probs=95.7
Q ss_pred ceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC-CceEEEcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938 53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE-PEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF 131 (348)
Q Consensus 53 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~-~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (348)
++|+++| +++|++++|+||||||||||+++|+|++.|+ +|+|.++|.++. ++.+ ....+..+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~------------~~~~---~~~~~v~q 77 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE------------YVFK---HKKSIVNQ 77 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC------------SCCC---CSSSEEEE
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce------------eecC---CcceeeeH
Confidence 5899999 8999999999999999999999999999887 899988875421 1100 00001000
Q ss_pred CccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHH
Q 018938 132 EVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 211 (348)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~ 211 (348)
..+++.. ..| |++||+||..+|++||+|||| |+.+...
T Consensus 78 -----------------------------~~~gl~~----~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~ 115 (261)
T 2eyu_A 78 -----------------------------REVGEDT----KSF------ADALRAALREDPDVIFVGEMR---DLETVET 115 (261)
T ss_dssp -----------------------------EEBTTTB----SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHH
T ss_pred -----------------------------HHhCCCH----HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHH
Confidence 0122211 122 899999999999999999999 9988654
Q ss_pred HHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 212 LLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 212 l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
+ ++. + +.|.+|+++||+.+ +..+|||+++|.
T Consensus 116 ~---l~~-~-~~g~~vl~t~H~~~-~~~~~dri~~l~ 146 (261)
T 2eyu_A 116 A---LRA-A-ETGHLVFGTLHTNT-AIDTIHRIVDIF 146 (261)
T ss_dssp H---HHH-H-HTTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred H---HHH-H-ccCCEEEEEeCcch-HHHHHHHHhhhc
Confidence 4 333 3 35899999999987 566788876554
No 100
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.82 E-value=3.2e-20 Score=194.30 Aligned_cols=104 Identities=21% Similarity=0.309 Sum_probs=94.2
Q ss_pred HHHHcCCC---cCccCCCCCHHHHHHHHHHHHHccCC--cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Q 018938 159 LIKVLDID---LSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 233 (348)
Q Consensus 159 ~l~~l~l~---~~~~~~~LSgGqrQRv~lAraL~~~P--~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd 233 (348)
.+..+|+. +++.+.+|||||+|||+||++|+.+| ++|||||||++||+...+.++++|+++. +.|.|||+||||
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~-~~G~TVIvVeHd 440 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK-RGGNSLFVVEHD 440 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-TTTCEEEEECCC
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH-HcCCEEEEEcCC
Confidence 46667775 47789999999999999999999999 5999999999999999999999999985 569999999999
Q ss_pred hhhhhhhCCEEEEE------cCCEEeeecChhHHHHh
Q 018938 234 FDGLENWPSHIVYV------AHGKLQLAMPMDKVKEA 264 (348)
Q Consensus 234 ~~~~~~~~d~v~~l------~~G~i~~~g~~~~~~~~ 264 (348)
++++. .||+|++| ++|++++.|+++++...
T Consensus 441 l~~l~-~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 441 LDVIR-RADWLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp HHHHT-TCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred HHHHH-hCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 99775 69999999 79999999999988754
No 101
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.79 E-value=2.6e-20 Score=193.87 Aligned_cols=133 Identities=22% Similarity=0.191 Sum_probs=94.8
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-CCCceEEEcCeeccccccccccCcccccchhhhhhhhhc
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-VEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFA 129 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (348)
+..+++|+||+ |++++|+||||||||||||+|+|+.. +..|.+. .. ....+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------pa----------------~~~~i~~v 619 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------PA----------------EEAHLPLF 619 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------SS----------------SEEEECCC
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------eh----------------hccceeeH
Confidence 35789999999 99999999999999999999999753 4555421 00 00112222
Q ss_pred CCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHH--ccCCcEEEeecc---CCCC
Q 018938 130 GFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGL--LKPFKVLLLDEI---TVDL 204 (348)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL--~~~P~lLlLDEP---tsgL 204 (348)
++ ++..++..+ .....+|+||+|++.+|+++ +.+|+++||||| |++|
T Consensus 620 ~~---i~~~~~~~d-------------------------~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~l 671 (765)
T 1ewq_A 620 DG---IYTRIGASD-------------------------DLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSL 671 (765)
T ss_dssp SE---EEEECCC-------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHH
T ss_pred HH---hhccCCHHH-------------------------HHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCc
Confidence 11 111111000 01125799999999999999 999999999999 9999
Q ss_pred CHHHH-HHHHHHHHHHHHhcCcEEEEEecChhhhhhhC
Q 018938 205 DVLAR-ADLLRFLRKECEERGATIIYATHIFDGLENWP 241 (348)
Q Consensus 205 D~~~~-~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~ 241 (348)
|+.+. ..+++.|.+ .|.|+|++||+.+++. +|
T Consensus 672 D~~~~~~~i~~~L~~----~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 672 DGVAIATAVAEALHE----RRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp HHHHHHHHHHHHHHH----HTCEEEEECCCHHHHT-CC
T ss_pred CHHHHHHHHHHHHHh----CCCEEEEEeCCHHHHH-hh
Confidence 99876 467777764 4899999999998764 55
No 102
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.79 E-value=2.4e-20 Score=195.10 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=102.4
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-CCceEEEcCeeccccccccccCcccccchhhhhhhhhc
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-EPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFA 129 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (348)
+..+++|++|+ ++|++++|+||||||||||||+|+|+..+ ..| ..+ +.. ...+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~v---------------pa~-~~~i~~~ 650 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYV---------------PAQ-KVEIGPI 650 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCB---------------SSS-EEEECCC
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------ccc---------------chh-cccceeH
Confidence 35789999999 99999999999999999999999996321 111 000 000 0011111
Q ss_pred CCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHH
Q 018938 130 GFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 209 (348)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~ 209 (348)
.+ ++..+...+. .....+++|++|++ ++.+..++.+|+++||||||+|+|+...
T Consensus 651 ~~---i~~~~~~~d~----------------------l~~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~ 704 (800)
T 1wb9_A 651 DR---IFTRVGAADD----------------------LASGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDG 704 (800)
T ss_dssp CE---EEEEEC---------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHH
T ss_pred HH---HHhhCCHHHH----------------------HHhhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHH
Confidence 10 1111111000 01123457777765 4444556899999999999999999877
Q ss_pred HHH-HHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeec
Q 018938 210 ADL-LRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 210 ~~l-~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 256 (348)
..+ +.+++.+.++.|.++|++|||.+++. +||++..+.+|++....
T Consensus 705 ~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 705 LSLAWACAENLANKIKALTLFATHYFELTQ-LPEKMEGVANVHLDALE 751 (800)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHSTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhccCCeEEEEeCCHHHHH-HhhhhhceEEEEEEEEE
Confidence 775 77888876545899999999998764 89987777777765543
No 103
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.79 E-value=5.3e-21 Score=168.52 Aligned_cols=178 Identities=16% Similarity=0.194 Sum_probs=96.9
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC-----cCCCceEEEcCeecc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH-----MVEPEMVKVLGRSAF 104 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~-----~~~~G~i~i~G~~~~ 104 (348)
+|+++||+|.|+ .+++++ |++.+|.+++|+|+||||||||++.|+|.. .|++|.+.+.+....
T Consensus 3 ~l~~~~~~~~~~----------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~ 70 (210)
T 1pui_A 3 NLNYQQTHFVMS----------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV 70 (210)
T ss_dssp --------CEEE----------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE
T ss_pred chhhhhhhheee----------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEe
Confidence 589999999994 357777 899999999999999999999999999987 677776544221100
Q ss_pred cc-cccc-ccCccc----c-cchhhhhhhhhcCCCccccccchHHHHHhcc-CCCCH--HHHHHHHHHcCCC---cCccC
Q 018938 105 HD-TALT-SSGDLS----Y-LGGEWRREVAFAGFEVPIQMDVSAEKMIFGV-AGIDP--QRRAELIKVLDID---LSWRM 171 (348)
Q Consensus 105 ~~-~~~~-~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~l~~l~l~---~~~~~ 171 (348)
.+ ..+. ..+... . ....++..+.+..+.......+. +.... ..... ....+++...++. ...++
T Consensus 71 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~ 147 (210)
T 1pui_A 71 ADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLV---VLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKA 147 (210)
T ss_dssp ETTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEE---EEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred cCCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEE---EEEECCCCCchhHHHHHHHHHHcCCCeEEEEecc
Confidence 00 0000 000000 0 00011111111000000000000 00000 01111 2233445555654 24567
Q ss_pred CCCCHHHHHH-HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHh
Q 018938 172 HKVSDGQRRR-VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 222 (348)
Q Consensus 172 ~~LSgGqrQR-v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~ 222 (348)
..+|+||+|| +.++++++.+|.++++|||||++|+.+..++++.|.++..+
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 8899999999 89999999999999999999999999999999999987643
No 104
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.79 E-value=4.4e-22 Score=186.74 Aligned_cols=165 Identities=13% Similarity=0.030 Sum_probs=75.4
Q ss_pred eceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC-CcCCCceEEEcCeecccccccccc
Q 018938 34 NALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK-HMVEPEMVKVLGRSAFHDTALTSS 112 (348)
Q Consensus 34 ~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl-~~~~~G~i~i~G~~~~~~~~~~~~ 112 (348)
.||++.|+ ++.++++++|+| +|+||||||||||+++|+|. ..|++| +.+.|..+..... .
T Consensus 2 ~~l~~~~~---------~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~---~ 62 (301)
T 2qnr_A 2 SNLPNQVH---------RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQ---I 62 (301)
T ss_dssp -------------------------CEEE------EEEEETTSSHHHHHHHHHC--------------------------
T ss_pred CCCcceEC---------CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcce---E
Confidence 47899994 578999999998 99999999999999999997 788888 7776654321100 0
Q ss_pred CcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCC
Q 018938 113 GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPF 192 (348)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P 192 (348)
..+.+..+.. +. .....................+. .....+.+. .+.++.++|||||||+.+|||++
T Consensus 63 ~~~~~~~q~~----~~-~~~ltv~Dt~g~~~~~~~~e~~~-~l~~~l~~~----~~~~~~~~sgg~rqrv~~ara~~--- 129 (301)
T 2qnr_A 63 EASTVEIEER----GV-KLRLTVVDTPGYGDAINCRDCFK-TIISYIDEQ----FERYLHDESGLNRRHIIDNRVHC--- 129 (301)
T ss_dssp --CEEEEC-------C-CEEEEEEEEC-----------CT-THHHHHHHH----HHHHHHHHTSSCCTTCCCCCCCE---
T ss_pred eeEEEEecCC----Cc-ccCcchhhhhhhhhhcCcHHHHH-HHHHHHHHH----HHHHHHHhCHHhhhhhhhhhhhh---
Confidence 0011110000 00 00000000000000000000000 011111111 23567889999999999999986
Q ss_pred cEEEeeccCCC-CCHHHHHHHHHHHHHHHHhcCcEEEEEecChh
Q 018938 193 KVLLLDEITVD-LDVLARADLLRFLRKECEERGATIIYATHIFD 235 (348)
Q Consensus 193 ~lLlLDEPtsg-LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 235 (348)
+|++||||++ ||+... ++++++..+.+.++|+++||+.
T Consensus 130 -ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 -CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp -EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred -eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 9999999985 999863 5666665445889999999974
No 105
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.78 E-value=6.6e-19 Score=162.99 Aligned_cols=152 Identities=17% Similarity=0.232 Sum_probs=97.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccch
Q 018938 61 TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS 140 (348)
Q Consensus 61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (348)
.+++|++++|+||||||||||++.+++... .|.+ +.|.... ..+. +.|...+.... .+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~------~~~~-----------v~~~~~e~~~~-~~- 83 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGEL------PTGP-----------VIYLPAEDPPT-AI- 83 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCC------CCCC-----------EEEEESSSCHH-HH-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccC------CCcc-----------EEEEECCCCHH-HH-
Confidence 478999999999999999999999998542 4443 2232110 0011 11211111110 00
Q ss_pred HHHH-HhccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCC--CCCHHHH---HHH
Q 018938 141 AEKM-IFGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV--DLDVLAR---ADL 212 (348)
Q Consensus 141 ~~~~-~~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPts--gLD~~~~---~~l 212 (348)
.... ..+ .........++++.+.+. .++.+..||+||.|++ ++++.+|++||+||||+ ++|+... ..+
T Consensus 84 ~~r~~~~g-~~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 84 HHRLHALG-AHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp HHHHHHHH-TTSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred HHHHHHHH-hhcChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 0011 011 122334455667777654 3567899999998765 68888999999999999 9998544 788
Q ss_pred HHHHHHHHHhcCcEEEEEecChhhhh
Q 018938 213 LRFLRKECEERGATIIYATHIFDGLE 238 (348)
Q Consensus 213 ~~~l~~l~~~~g~tviivtHd~~~~~ 238 (348)
++.|++++++.|+|||++||+.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC-----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCccc
Confidence 89999988777999999999987654
No 106
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.78 E-value=3.8e-19 Score=157.67 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=103.4
Q ss_pred Cceeeeeee-EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcC
Q 018938 52 TPLINDFTL-TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG 130 (348)
Q Consensus 52 ~~~l~~vsl-~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (348)
.+.|+.+.. .+++|++++|+||||||||||++.|++ ....+.++++.... .. ...+..
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~-----------~~--~~~~~~------ 64 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGG-----------FS--PERLVQ------ 64 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCC-----------CC--HHHHHH------
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCC-----------CC--HHHHHH------
Confidence 567787776 799999999999999999999999998 33222333322110 00 000000
Q ss_pred CCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHH--HHHHHHHHHHccC-CcEEEeeccCCCCCHH
Q 018938 131 FEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQ--RRRVQICMGLLKP-FKVLLLDEITVDLDVL 207 (348)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGq--rQRv~lAraL~~~-P~lLlLDEPtsgLD~~ 207 (348)
.. ...+.+.+ ++++.+ .+.++|+++ +|+++.+++++.+ |+++|+||||+.+|+.
T Consensus 65 -------------~~-~~~~~~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~ 121 (220)
T 2cvh_A 65 -------------MA-ETRGLNPE---EALSRF------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE 121 (220)
T ss_dssp -------------HH-HTTTCCHH---HHHHHE------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred -------------HH-HhcCCChH---HHhhcE------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence 00 00011111 122222 233445554 5688888999986 9999999999999973
Q ss_pred H--------HHHHHHHHHHHHHhcCcEEEEEecChh-------------hhhhhCCEEEEEcCC
Q 018938 208 A--------RADLLRFLRKECEERGATIIYATHIFD-------------GLENWPSHIVYVAHG 250 (348)
Q Consensus 208 ~--------~~~l~~~l~~l~~~~g~tviivtHd~~-------------~~~~~~d~v~~l~~G 250 (348)
. ...+++.|++++++.|+|||+++|... .+..+||++++|+..
T Consensus 122 ~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 122 ENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 3 345666788888778999999999876 567899999999754
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.77 E-value=8.8e-20 Score=174.49 Aligned_cols=166 Identities=14% Similarity=0.141 Sum_probs=102.7
Q ss_pred Cceeeee-eeEEeCCCEEEEECCCCCcHHHHHHHHhCCC--cCCC----ce-EEEcCeeccccccccccCcccccchhhh
Q 018938 52 TPLINDF-TLTLNAGDRCLLVGSNGAGKTTILKIIGGKH--MVEP----EM-VKVLGRSAFHDTALTSSGDLSYLGGEWR 123 (348)
Q Consensus 52 ~~~l~~v-sl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~--~~~~----G~-i~i~G~~~~~~~~~~~~~~~~~~~~~~~ 123 (348)
.+.|+.+ ++.|++|++++|+||||||||||++.++|.. +|+. |. |++++...+ .+
T Consensus 117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-----------------~~ 179 (349)
T 1pzn_A 117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-----------------RP 179 (349)
T ss_dssp CHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-----------------CH
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-----------------CH
Confidence 3567776 7899999999999999999999999999987 5555 56 677664321 01
Q ss_pred hhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHc-------cCCcEEE
Q 018938 124 REVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL-------KPFKVLL 196 (348)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~-------~~P~lLl 196 (348)
..+.+..+... .... .+++.+.+. . ..-|.+++|++.++++++ .+|++||
T Consensus 180 ~~i~~i~q~~~----------------~~~~---~v~~ni~~~--~--~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 180 ERIREIAQNRG----------------LDPD---EVLKHIYVA--R--AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HHHHHHHHTTT----------------CCHH---HHGGGEEEE--E--CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HHHHHHHHHcC----------------CCHH---HHhhCEEEE--e--cCChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 11222111110 1111 111111100 0 011567888888888888 7899999
Q ss_pred eeccCCCCCHHH------------HHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecC
Q 018938 197 LDEITVDLDVLA------------RADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMP 257 (348)
Q Consensus 197 LDEPtsgLD~~~------------~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 257 (348)
+||||++||+.. ...++..|++++++.|+|||+++|.......+++.......|++++.+.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence 999999999862 4567777888877789999999999876655445556666777665543
No 108
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.77 E-value=7e-21 Score=194.53 Aligned_cols=196 Identities=16% Similarity=0.171 Sum_probs=107.0
Q ss_pred CCeEEEeceEEEecCCCCCCCCCCCceeeee----------eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC-CCceE
Q 018938 28 KPTVEINALKFTYPGIDGHPPPGSTPLINDF----------TLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV-EPEMV 96 (348)
Q Consensus 28 ~~~l~v~~ls~~y~~~~~~~~~g~~~~l~~v----------sl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~-~~G~i 96 (348)
.+.+.++||++.|+. ..+++|+.+ +|+++. ++|+||||||||||+++|+|+..| ++|.|
T Consensus 8 ~~~i~~~~l~~~~~~-------~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~v 77 (608)
T 3szr_A 8 PGSVAENNLCSQYEE-------KVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIV 77 (608)
T ss_dssp ------------CHH-------HHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------C
T ss_pred CchhhhhhhhHHHHH-------HHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeE
Confidence 446899999999952 123455544 366665 999999999999999999999888 79999
Q ss_pred EEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCH
Q 018938 97 KVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSD 176 (348)
Q Consensus 97 ~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSg 176 (348)
+++|.++..... .. ...++..++|.++...+....++.+.+ ......++... ..+|
T Consensus 78 t~~g~~i~~~~~----~~----~~~~~~~i~~v~Q~~~l~~~~tv~e~i-----------~~~~~~~~~~~----~~~s- 133 (608)
T 3szr_A 78 TRCPLVLKLKKL----VN----EDKWRGKVSYQDYEIEISDASEVEKEI-----------NKAQNAIAGEG----MGIS- 133 (608)
T ss_dssp CCSCEEEEEEEC----SS----SSCCEEEESCC---CCCCCHHHHHTTH-----------HHHHHHHHCSS----SCCC-
T ss_pred EEcCEEEEEecC----Cc----cccceeEEeeecccccCCCHHHHHHHH-----------HHHHHHhcCCc----cccc-
Confidence 999976421100 00 012334456655443333322222211 11111111100 0111
Q ss_pred HHHHHHHHHHHHccCCcEEEeecc------CCCCCHHHHHHHHHHHHHHHH-hcCcEEEEEecChhhhhhh---------
Q 018938 177 GQRRRVQICMGLLKPFKVLLLDEI------TVDLDVLARADLLRFLRKECE-ERGATIIYATHIFDGLENW--------- 240 (348)
Q Consensus 177 GqrQRv~lAraL~~~P~lLlLDEP------tsgLD~~~~~~l~~~l~~l~~-~~g~tviivtHd~~~~~~~--------- 240 (348)
++++.++.+....|+++|+||| |+|||+..+..+.++++++.+ ..+.+++++|||++.+...
T Consensus 134 --~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~ 211 (608)
T 3szr_A 134 --HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVD 211 (608)
T ss_dssp --SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHC
T ss_pred --hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHh
Confidence 1223334444568999999999 999999999999999999743 4578999999998744222
Q ss_pred ---CCEEEEEcCCEEeeecChh
Q 018938 241 ---PSHIVYVAHGKLQLAMPMD 259 (348)
Q Consensus 241 ---~d~v~~l~~G~i~~~g~~~ 259 (348)
+..|+++.++.++..|+.+
T Consensus 212 ~~g~rtI~VlTK~Dlv~~g~~~ 233 (608)
T 3szr_A 212 PEGDRTIGILTKPDLVDKGTED 233 (608)
T ss_dssp SSCCSEEEEEECGGGSSSSSTT
T ss_pred hcCCceEEEecchhhcCcccHH
Confidence 3567888887776665543
No 109
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.76 E-value=2.4e-21 Score=169.70 Aligned_cols=156 Identities=16% Similarity=0.077 Sum_probs=94.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHH
Q 018938 65 GDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM 144 (348)
Q Consensus 65 Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (348)
|++++|+||||||||||+++|+|+++ ++| |.++|..... .. .+++.+++..+...-... +
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~---~~----------~~~~~ig~~~~~~~g~~~-----~ 60 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEE---VR----------QGGRRIGFDVVTLSGTRG-----P 60 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCE---EE----------TTSSEEEEEEEETTSCEE-----E
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecch---hH----------hhhceEEEEEEeccccee-----h
Confidence 78999999999999999999999988 889 8888764311 00 112233333222100000 0
Q ss_pred HhccCCCCHHHHHHHHHHcCC--CcCccCCCCCHHHHHHH-HHHH---HHccCCcEEEeec--cCCCCCHHHHHHHHHHH
Q 018938 145 IFGVAGIDPQRRAELIKVLDI--DLSWRMHKVSDGQRRRV-QICM---GLLKPFKVLLLDE--ITVDLDVLARADLLRFL 216 (348)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~l~l--~~~~~~~~LSgGqrQRv-~lAr---aL~~~P~lLlLDE--PtsgLD~~~~~~l~~~l 216 (348)
+... ..... .... ...++...+|+|||+++ +|++ |++.+|++||||| |++.+|+.....+.+++
T Consensus 61 l~~~-~~~~~-------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 61 LSRV-GLEPP-------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp EEEC-CCCCC-------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred hhcc-cccCC-------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 0000 00000 0000 01234457999999988 4455 6899999999999 99999997666655555
Q ss_pred HHHHHhcCcEEE----EEecChhhhhhhCCEEEEEcCCEEeee
Q 018938 217 RKECEERGATII----YATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 217 ~~l~~~~g~tvi----ivtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
. . ..++| .+||+.+ ..++|+|..+.+|+|+..
T Consensus 133 ~----~-~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 133 S----T-PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp H----C-SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred h----C-CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence 3 3 33444 3459873 234555555678888764
No 110
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.74 E-value=2.3e-19 Score=171.77 Aligned_cols=136 Identities=13% Similarity=0.157 Sum_probs=89.0
Q ss_pred Cceeeeeee-------EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC-CceEEEcCeeccccccccccCcccccchhhh
Q 018938 52 TPLINDFTL-------TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE-PEMVKVLGRSAFHDTALTSSGDLSYLGGEWR 123 (348)
Q Consensus 52 ~~~l~~vsl-------~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~-~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~ 123 (348)
.+.|+++.+ .+.+|++++|+||||||||||+++|+|++.|+ .|.|...+.++ . +. ..
T Consensus 103 ~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e-----------~~---~~ 167 (356)
T 3jvv_A 103 VLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-E-----------FV---HE 167 (356)
T ss_dssp CCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-C-----------SC---CC
T ss_pred CCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-H-----------hh---hh
Confidence 445666665 67889999999999999999999999998887 45543322111 0 00 00
Q ss_pred hhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCC
Q 018938 124 REVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVD 203 (348)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsg 203 (348)
....+..+. . . . ...+|-.+ +||+||.++|++||+||||
T Consensus 168 ~~~~~v~q~-~----~-------~-----------------------~~~~~~~~----~La~aL~~~PdvillDEp~-- 206 (356)
T 3jvv_A 168 SKKCLVNQR-E----V-------H-----------------------RDTLGFSE----ALRSALREDPDIILVGEMR-- 206 (356)
T ss_dssp CSSSEEEEE-E----B-------T-----------------------TTBSCHHH----HHHHHTTSCCSEEEESCCC--
T ss_pred ccccceeee-e----e-------c-----------------------cccCCHHH----HHHHHhhhCcCEEecCCCC--
Confidence 000010000 0 0 0 00011111 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCC
Q 018938 204 LDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAHG 250 (348)
Q Consensus 204 LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G 250 (348)
|++.. +.+.+++ +.|.+||+++|+.+.+ ..|||++.|..|
T Consensus 207 -d~e~~----~~~~~~~-~~G~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 207 -DLETI----RLALTAA-ETGHLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp -SHHHH----HHHHHHH-HTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred -CHHHH----HHHHHHH-hcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence 66554 3434444 3599999999999988 679999888543
No 111
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.74 E-value=4e-21 Score=170.14 Aligned_cols=143 Identities=17% Similarity=0.138 Sum_probs=97.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchH
Q 018938 62 LNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSA 141 (348)
Q Consensus 62 i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (348)
.++|+++||+||||||||||+++|+|++.| .+.+-..+.+ .. .. ..++.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~----~~---~~---------------------~~~~~ 51 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY----YK---DL---------------------GHLPL 51 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC----BC---CC---------------------TTSCH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc----cc---Cc---------------------ccccH
Confidence 578999999999999999999999997654 2222111000 00 00 00011
Q ss_pred HH-HH--hcc-CCCCHHHHHHHHHHcCCC--cCccCCCCCHHH----HHHHHHHHHHccCCcEEEeeccCCC-------C
Q 018938 142 EK-MI--FGV-AGIDPQRRAELIKVLDID--LSWRMHKVSDGQ----RRRVQICMGLLKPFKVLLLDEITVD-------L 204 (348)
Q Consensus 142 ~~-~~--~~~-~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGq----rQRv~lAraL~~~P~lLlLDEPtsg-------L 204 (348)
.+ .. +.. ...+.+...++++.+++. ...++.++|+|| +||+++|++++.+|.++++||||++ |
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 52 EERLRVNYDHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp HHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred HHhcCCCCCChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 11 00 010 112345556666766653 345678899996 4788999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEEecChh
Q 018938 205 DVLARADLLRFLRKECEERGATIIYATHIFD 235 (348)
Q Consensus 205 D~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 235 (348)
|+.....+.+.+.+..++.|.|+++++|+..
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999998865567999999999853
No 112
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.73 E-value=5e-18 Score=170.48 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=71.7
Q ss_pred cCCCC-CHHHHHHHHHHHHHccCC--cEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEE
Q 018938 170 RMHKV-SDGQRRRVQICMGLLKPF--KVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVY 246 (348)
Q Consensus 170 ~~~~L-SgGqrQRv~lAraL~~~P--~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~ 246 (348)
++.+| ||||+|||+||+||+.+| ++|||||||+|||+.++..+.++|+++.+ |.|||+||||++.+. +||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~~-~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIAA-RAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHHH-HSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHH-hCCEEEE
Confidence 35667 999999999999999999 99999999999999999999999999864 789999999999876 6999999
Q ss_pred EcCC
Q 018938 247 VAHG 250 (348)
Q Consensus 247 l~~G 250 (348)
|+++
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9654
No 113
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.73 E-value=1.4e-17 Score=143.62 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=70.1
Q ss_pred CccCCCCCHHHHHHHHHHHHHcc----CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCE
Q 018938 168 SWRMHKVSDGQRRRVQICMGLLK----PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSH 243 (348)
Q Consensus 168 ~~~~~~LSgGqrQRv~lAraL~~----~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~ 243 (348)
.+++..||||||||++||++|+. +|+++||||||++||+.++..+.++|+++.+ +.++|++||+...+ .+||+
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~~~-~~ad~ 135 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDVMM-ANADK 135 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHHHH-TTCSE
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHHHH-HhCCE
Confidence 34578999999999999999974 4699999999999999999999999998753 56899999997755 68999
Q ss_pred EEEE--cCCEE
Q 018938 244 IVYV--AHGKL 252 (348)
Q Consensus 244 v~~l--~~G~i 252 (348)
++.+ .+|..
T Consensus 136 i~~v~~~~g~s 146 (173)
T 3kta_B 136 IIGVSMRDGVS 146 (173)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEecCCEE
Confidence 9855 46653
No 114
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.71 E-value=9.5e-19 Score=164.15 Aligned_cols=155 Identities=20% Similarity=0.160 Sum_probs=92.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhh--hhhhhhcCCCccccccchH
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEW--RREVAFAGFEVPIQMDVSA 141 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 141 (348)
+|++++|+||||||||||+++|+|++.|+.|+|.+.|.+++..... .++ ..+ +..++++++.....+..+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~---~ql----~~~~~~~~i~~v~q~~~~~p~~~v 173 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGG---TQL----SEWGKRLSIPVIQGPEGTDSAALA 173 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTT---HHH----HHHHHHHTCCEECCCTTCCHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHH---HHH----HHHHHhcCceEEEeCCCCCHHHHH
Confidence 6999999999999999999999999999999999999875432110 000 012 2234555443322222222
Q ss_pred HHHH-hcc-CCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHH
Q 018938 142 EKMI-FGV-AGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKE 219 (348)
Q Consensus 142 ~~~~-~~~-~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l 219 (348)
.+.+ ... .+.+ ..+++..|.. +.....++...+||++||||++.+|+.++| .||+.+...+++.++++
T Consensus 174 ~~~v~~~~~~~~d----~~llDt~G~~-~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~ 243 (304)
T 1rj9_A 174 YDAVQAMKARGYD----LLFVDTAGRL-HTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKF 243 (304)
T ss_dssp HHHHHHHHHHTCS----EEEECCCCCC-TTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHH
T ss_pred HHHHHHHHhCCCC----EEEecCCCCC-CchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHH
Confidence 2221 100 0000 0011111211 111222345558999999999999994443 34444444566677777
Q ss_pred HHhcCcEEEEEecChh
Q 018938 220 CEERGATIIYATHIFD 235 (348)
Q Consensus 220 ~~~~g~tviivtHd~~ 235 (348)
.+..|.|+|++||+..
T Consensus 244 ~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 244 HEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHCCSEEEEECTTS
T ss_pred HHHcCCcEEEEECCcc
Confidence 6666999999999854
No 115
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.69 E-value=2e-16 Score=142.23 Aligned_cols=149 Identities=13% Similarity=0.251 Sum_probs=85.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC--CCcC-----CCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCc
Q 018938 61 TLNAGDRCLLVGSNGAGKTTILKIIGG--KHMV-----EPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEV 133 (348)
Q Consensus 61 ~i~~Ge~~~liG~NGsGKSTLlk~i~G--l~~~-----~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (348)
-|++|++++|+||||||||||++.|++ +..+ ..|.+++++...+.... + ..+...+++
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~------~----~~~~~~~g~----- 84 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER------L----LAVAERYGL----- 84 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHH------H----HHHHHHTTC-----
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHH------H----HHHHHHcCC-----
Confidence 588999999999999999999999999 4444 34556665542100000 0 000111111
Q ss_pred cccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHH-HHHHHHHc--cCCcEEEeeccCCCCCHH---
Q 018938 134 PIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRR-VQICMGLL--KPFKVLLLDEITVDLDVL--- 207 (348)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQR-v~lAraL~--~~P~lLlLDEPtsgLD~~--- 207 (348)
..+ ++++.+. ....++..+... +.-+..++ .+|+++++|||++.+|+.
T Consensus 85 ------------------~~~---~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~ 138 (243)
T 1n0w_A 85 ------------------SGS---DVLDNVA-----YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSG 138 (243)
T ss_dssp ------------------CHH---HHHHTEE-----EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-----
T ss_pred ------------------CHH---HHhhCeE-----EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcC
Confidence 110 0111110 112234443322 22222232 689999999999999985
Q ss_pred ----H-----HHHHHHHHHHHHHhcCcEEEEEecChhhhhh-------------------hCCEEEEEcCC
Q 018938 208 ----A-----RADLLRFLRKECEERGATIIYATHIFDGLEN-------------------WPSHIVYVAHG 250 (348)
Q Consensus 208 ----~-----~~~l~~~l~~l~~~~g~tviivtHd~~~~~~-------------------~~d~v~~l~~G 250 (348)
. ...++..|.+++++.|+|||+++|....... +||++++|+.|
T Consensus 139 ~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 139 RGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 3456777777777789999999997765443 89999999865
No 116
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.67 E-value=1.2e-19 Score=174.50 Aligned_cols=170 Identities=11% Similarity=0.081 Sum_probs=103.9
Q ss_pred eeeeeeEEeC--CCEEEEECCCCCcHHHHHHHHhCCCcCCC----ceEEEcCeeccccccccccCcccccchhhhhhhhh
Q 018938 55 INDFTLTLNA--GDRCLLVGSNGAGKTTILKIIGGKHMVEP----EMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAF 128 (348)
Q Consensus 55 l~~vsl~i~~--Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~----G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (348)
.+.|+++|.+ |++++|+||||||||||+|+|+|++.|++ |++.+++... +.. +.+....+ ..+++
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~--~~~------~~~~~~~~-~~I~~ 228 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG--GDE------QAMQYSDY-PQMAL 228 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS--SCT------TSSCTTTH-HHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC--CCc------ccCChhHH-HHHHH
Confidence 4679999999 99999999999999999999999999888 6655432100 000 00000111 12222
Q ss_pred cCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHc-cCCcEEEeec---cC---
Q 018938 129 AGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL-KPFKVLLLDE---IT--- 201 (348)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~-~~P~lLlLDE---Pt--- 201 (348)
..+.. .....+..+.+. +..... ....+..+|+|++|+..+++++. .+|+++|||| |+
T Consensus 229 ~~q~~-~~~~~t~~~nl~-~~~~~~-------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~ 293 (365)
T 1lw7_A 229 GHQRY-IDYAVRHSHKIA-FIDTDF-------------ITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDD 293 (365)
T ss_dssp HHHHH-HHHHHHHCSSEE-EESSCH-------------HHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC----
T ss_pred HHHHH-HHHHHhccCCEE-EEeCCc-------------hHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccC
Confidence 21110 000000000000 000000 01122345677788888888874 6999999999 65
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcC
Q 018938 202 ---VDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVAH 249 (348)
Q Consensus 202 ---sgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~ 249 (348)
.++|+..+..+.+.|.++.++.+.+||+++|. ...+++|+++.++++
T Consensus 294 g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~ 343 (365)
T 1lw7_A 294 GLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK 343 (365)
T ss_dssp -------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH
T ss_pred CCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH
Confidence 58999999999999998877668999999986 566677777666643
No 117
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.66 E-value=2.2e-18 Score=168.19 Aligned_cols=166 Identities=20% Similarity=0.179 Sum_probs=88.7
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA 108 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~ 108 (348)
.+|.++||+++|+ ++.+++++||+| +|+|+||||||||+++|+|...+.+|. +|.... ...
T Consensus 10 ~~l~~~~l~~~y~---------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~~~-~~~ 70 (418)
T 2qag_C 10 GYVGFANLPNQVY---------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY---PGPSHR-IKK 70 (418)
T ss_dssp -----CCCCCCTT---------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC------
T ss_pred CcEEEEecceeEC---------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC---CCcccC-Ccc
Confidence 4699999999994 467999999998 999999999999999999998765552 121110 000
Q ss_pred ccccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHH
Q 018938 109 LTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMG 187 (348)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAra 187 (348)
... ...+++..+.......++..+. .++...........+.+.+. ..++.+++||++|||+
T Consensus 71 -----t~~------~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~-------~~~~~~l~qr~~IaRa 132 (418)
T 2qag_C 71 -----TVQ------VEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYID-------SKFEDYLNAESRVNRR 132 (418)
T ss_dssp -----CCE------EEEEECC------CEEEEEEECC-----------CHHHHHHHH-------HHHHHHTTTSCC-CCC
T ss_pred -----cee------eeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 000 0011111111111000100000 00000000000011111110 1456678899999999
Q ss_pred HccCCc---EEEeeccC-CCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhh
Q 018938 188 LLKPFK---VLLLDEIT-VDLDVLARADLLRFLRKECEERGATIIYATHIFDGL 237 (348)
Q Consensus 188 L~~~P~---lLlLDEPt-sgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~ 237 (348)
++.+|+ +|++|||| ++||+... ++++.+. . +.+||+|.|..+.+
T Consensus 133 l~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~-~v~iIlVinK~Dll 180 (418)
T 2qag_C 133 QMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-E-KVNIIPLIAKADTL 180 (418)
T ss_dssp CCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-T-TSEEEEEEESTTSS
T ss_pred hccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-c-cCcEEEEEEcccCc
Confidence 999999 99999999 69999763 4455553 3 78888888876643
No 118
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.63 E-value=5.2e-17 Score=145.37 Aligned_cols=148 Identities=11% Similarity=0.106 Sum_probs=84.8
Q ss_pred eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC--CCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcccc
Q 018938 59 TLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV--EPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQ 136 (348)
Q Consensus 59 sl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~--~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (348)
.-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+..... + .+..++|.+++...+
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-------~--------e~~gi~y~fq~~~~f 74 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-------G--------EVHGEHYFFVNHDEF 74 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-------T--------CCBTTTBEECCHHHH
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-------c--------cccCceEEECCHHHH
Confidence 456799999999999999999999999999875 45666665542210 0 011233332221111
Q ss_pred ccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHH
Q 018938 137 MDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 216 (348)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l 216 (348)
..++... ++++.+. ....+.|--+++ +..++..++++||| ||+.++..+++.+
T Consensus 75 ~~~~~~~--------------~f~E~~~-----~~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l 127 (219)
T 1s96_A 75 KEMISRD--------------AFLEHAE-----VFGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKM 127 (219)
T ss_dssp HHHHHTT--------------CEEEEEE-----ETTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHC
T ss_pred HHHHhcC--------------HHHHHHH-----HHhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHc
Confidence 1110000 0000000 000011111221 33445568999999 9999999999887
Q ss_pred HHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCEEeeecChhHHH
Q 018938 217 RKECEERGATIIYATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVK 262 (348)
Q Consensus 217 ~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 262 (348)
. .+.||+++||+++++.. |+ +.+| .++++++.
T Consensus 128 ~-----~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~e~i~ 159 (219)
T 1s96_A 128 P-----HARSIFILPPSKIELDR---RL--RGRG----QDSEEVIA 159 (219)
T ss_dssp T-----TCEEEEEECSSHHHHHH---HH--HTTS----CSCHHHHH
T ss_pred c-----CCEEEEEECCCHHHHHH---HH--HHcC----CCCHHHHH
Confidence 5 38999999999998876 32 6666 35666654
No 119
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.60 E-value=6.3e-19 Score=153.37 Aligned_cols=164 Identities=13% Similarity=0.089 Sum_probs=99.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHH
Q 018938 65 GDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM 144 (348)
Q Consensus 65 Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (348)
|++++|+||||||||||+++|++ +.+|.+.++|..+.... . .++..+........+..+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~------~-----------~~~~~~~~~~~~~~~~~~~ 61 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMV------V-----------GGYRPPWESDELLALTWKN 61 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTC------C-----------TTCCCGGGCHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhh------c-----------cccccCccchhHHHHHHHH
Confidence 67999999999999999999997 66788888875432110 0 0111000000001111111
Q ss_pred HhccCCCCHHHHHHHHHH-----cC-C-Cc--CccCCCC--CHHHHHHHHHHH------HHccCCcEEEeeccCCCCCHH
Q 018938 145 IFGVAGIDPQRRAELIKV-----LD-I-DL--SWRMHKV--SDGQRRRVQICM------GLLKPFKVLLLDEITVDLDVL 207 (348)
Q Consensus 145 ~~~~~~~~~~~~~~~l~~-----l~-l-~~--~~~~~~L--SgGqrQRv~lAr------aL~~~P~lLlLDEPtsgLD~~ 207 (348)
+.. ........ ++ + .. .+....+ |+||+|++.++. +++.+|+...+|+ +||+.
T Consensus 62 l~~-------~~~~~~~~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~ 131 (189)
T 2bdt_A 62 ITD-------LTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGER 131 (189)
T ss_dssp HHH-------HHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGG
T ss_pred HHH-------HHHHHHhcCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHH
Confidence 000 00000000 00 0 00 0111234 889999988888 8999999888884 89998
Q ss_pred HHHHHHHHHHHHHHhcCcEEEEEecC-hhhhhhhCCEEEEEcCCEEeeecChhHHH
Q 018938 208 ARADLLRFLRKECEERGATIIYATHI-FDGLENWPSHIVYVAHGKLQLAMPMDKVK 262 (348)
Q Consensus 208 ~~~~l~~~l~~l~~~~g~tviivtHd-~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 262 (348)
.+.. ++.+..+. +.+.++|.+||. ++.++++||+|+ ++|+++..|+++-+.
T Consensus 132 ~~~~-~~~~~~~~-~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 132 CLEL-VEEFESKG-IDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp GGHH-HHHHHHTT-CCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HHHH-HHHHhhcC-CCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 8888 88888764 447899999999 999999999998 999999999876553
No 120
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.60 E-value=6.9e-17 Score=155.65 Aligned_cols=128 Identities=15% Similarity=0.158 Sum_probs=86.9
Q ss_pred eeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCC-CceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCc
Q 018938 55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVE-PEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEV 133 (348)
Q Consensus 55 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~-~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (348)
|++++ +++|++++|+||||||||||+++|+|++.|+ +|.|.+.+.++. + .++..++++.+.
T Consensus 128 l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e------------~---~~~~~~~~v~Q~- 189 (372)
T 2ewv_A 128 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE------------Y---VFKHKKSIVNQR- 189 (372)
T ss_dssp HHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC------------S---CCCCSSSEEEEE-
T ss_pred HHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh------------h---hhccCceEEEee-
Confidence 44444 7899999999999999999999999998887 899876553210 0 001111222110
Q ss_pred cccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHH
Q 018938 134 PIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLL 213 (348)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~ 213 (348)
.+++. +..| +.+|+++|..+|++|++|||+ |++...
T Consensus 190 ----------------------------~~g~~----~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~--- 225 (372)
T 2ewv_A 190 ----------------------------EVGED----TKSF------ADALRAALREDPDVIFVGEMR---DLETVE--- 225 (372)
T ss_dssp ----------------------------EBTTT----BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---
T ss_pred ----------------------------ecCCC----HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---
Confidence 01111 2334 469999999999999999999 776543
Q ss_pred HHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 214 RFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 214 ~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
..++.. ..|.+|+.++|+.+ +..+|||++.|
T Consensus 226 ~~l~~~--~~g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 226 TALRAA--ETGHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp HHHHHH--TTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred HHHHHH--hcCCEEEEEECcch-HHHHHHHHHHh
Confidence 344432 35889999999965 66677776433
No 121
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.59 E-value=1.8e-15 Score=145.68 Aligned_cols=77 Identities=31% Similarity=0.371 Sum_probs=68.0
Q ss_pred ccCCCCCHHHHHHH------HHHHHHccC-CcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhC
Q 018938 169 WRMHKVSDGQRRRV------QICMGLLKP-FKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWP 241 (348)
Q Consensus 169 ~~~~~LSgGqrQRv------~lAraL~~~-P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~ 241 (348)
.++..|||||+||+ ++|++|+.+ |++|||||||++||+..+..+.+.|.++. .+.+||++||+.+ +..+|
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~th~~~-~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK--SIPQMIIITHHRE-LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC--SCSEEEEEESCGG-GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc--cCCeEEEEEChHH-HHhhC
Confidence 34578999999988 567899999 99999999999999999999999998863 2468999999987 67899
Q ss_pred CEEEEEc
Q 018938 242 SHIVYVA 248 (348)
Q Consensus 242 d~v~~l~ 248 (348)
|++++|+
T Consensus 353 d~~~~l~ 359 (371)
T 3auy_A 353 DVIINVK 359 (371)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999997
No 122
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.59 E-value=7.6e-15 Score=142.41 Aligned_cols=62 Identities=13% Similarity=0.266 Sum_probs=49.1
Q ss_pred cCCcEEEeeccCCCCCHHHH------------HHHHHHHHHHHHhcCcEEEEEecCh-------------------hhhh
Q 018938 190 KPFKVLLLDEITVDLDVLAR------------ADLLRFLRKECEERGATIIYATHIF-------------------DGLE 238 (348)
Q Consensus 190 ~~P~lLlLDEPtsgLD~~~~------------~~l~~~l~~l~~~~g~tviivtHd~-------------------~~~~ 238 (348)
.+|+++++|||++.+|+... ..+++.|++++++.|+|||+++|.. ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999997543 6688889999888899999999982 2346
Q ss_pred hhCCEEEEEcCCE
Q 018938 239 NWPSHIVYVAHGK 251 (348)
Q Consensus 239 ~~~d~v~~l~~G~ 251 (348)
.+||.+++|+.++
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 7789999988763
No 123
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.58 E-value=3.1e-17 Score=157.52 Aligned_cols=139 Identities=12% Similarity=0.121 Sum_probs=98.7
Q ss_pred eeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcc
Q 018938 55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVP 134 (348)
Q Consensus 55 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (348)
++++||+|++|++++|+||||||||||+++|+|+++|+.|.|.++|..-.. . ...+..+++...+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~---~----------~~~~~~v~~v~~q-- 229 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELF---L----------PDHPNHVHLFYPS-- 229 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCC---C----------TTCSSEEEEECC---
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccC---c----------cccCCEEEEeecC--
Confidence 399999999999999999999999999999999999999999998742100 0 0001111221100
Q ss_pred ccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHH
Q 018938 135 IQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLR 214 (348)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~ 214 (348)
. . . ..++++..++..|+.++..+|+.+++|||.. ..+.+
T Consensus 230 -----------------~-~-~---------------~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~ 268 (361)
T 2gza_A 230 -----------------E-A-K---------------EEENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYD 268 (361)
T ss_dssp -------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHH
T ss_pred -----------------c-c-c---------------cccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHH
Confidence 0 0 0 0113455689999999999999999999986 24566
Q ss_pred HHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEcCCE
Q 018938 215 FLRKECEERGATIIYATHIFDGLENWPSHIVYVAHGK 251 (348)
Q Consensus 215 ~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 251 (348)
+|..+. ....|++.++|..+ +...++|+..+..+.
T Consensus 269 ~l~~l~-~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 269 FINVAA-SGHGGSITSCHAGS-CELTFERLALMVLQN 303 (361)
T ss_dssp HHHHHH-TTCCSCEEEEECSS-HHHHHHHHHHHHTTS
T ss_pred HHHHHh-cCCCeEEEEECCCC-HHHHHHHHHHHHhcc
Confidence 676664 32457899999965 778899999888764
No 124
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.56 E-value=3.9e-16 Score=151.97 Aligned_cols=171 Identities=16% Similarity=0.153 Sum_probs=95.9
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCE--EEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDR--CLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDT 107 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~--~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~ 107 (348)
.|++++ ++.|+ +.+ |+++||+|++|++ ++|+||||||||||+|+|+|+. ++|.++....
T Consensus 16 ~l~~~~-~~~y~---------~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~ 76 (427)
T 2qag_B 16 TVPLAG-HVGFD---------SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQ 76 (427)
T ss_dssp -CCCCC-CC-CC-----------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CC
T ss_pred eEEEee-EEEEC---------Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCC
Confidence 467777 88894 355 9999999999999 9999999999999999999973 1222111000
Q ss_pred cccccCcccccchhhhhhhhhcCCCccccccchHHHH-HhccCCCC------------HHHHHHHHHHc-CCC------c
Q 018938 108 ALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKM-IFGVAGID------------PQRRAELIKVL-DID------L 167 (348)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------------~~~~~~~l~~l-~l~------~ 167 (348)
. +. .+..+++..+...+...+++.+. .++. ..+ .....+++... ++. .
T Consensus 77 ~----~~-------~~~~i~~v~Q~~~l~~~ltv~D~~~~g~-~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~ 144 (427)
T 2qag_B 77 P----GV-------QLQSNTYDLQESNVRLKLTIVSTVGFGD-QINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYH 144 (427)
T ss_dssp S----SC-------EEEEEEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSC
T ss_pred c----cc-------eEeeEEEEeecCccccccchhhhhhhhh-ccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 0 00 00111121111111101110000 0000 000 11223334433 321 1
Q ss_pred CccC-----------CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecCh
Q 018938 168 SWRM-----------HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF 234 (348)
Q Consensus 168 ~~~~-----------~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~ 234 (348)
+.++ +.|+-.. +.|+++|..++++|++|||+..|.+.....+.+.+++-.+..|.+|+++|.|-
T Consensus 145 d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 145 DSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp C--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred cccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 1121 2456555 89999999999999999999999999999999999874456799999999763
No 125
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.55 E-value=5.4e-16 Score=133.74 Aligned_cols=47 Identities=17% Similarity=0.105 Sum_probs=40.3
Q ss_pred ccCCcEEEeeccCC-CCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh
Q 018938 189 LKPFKVLLLDEITV-DLDVLARADLLRFLRKECEERGATIIYATHIFDG 236 (348)
Q Consensus 189 ~~~P~lLlLDEPts-gLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~ 236 (348)
+.+|++||||||++ ++|+..+..+.+++.+.. +.|+++|++||....
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~-~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRY-NNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHH-HTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHH-HcCCCEEEEcCCChh
Confidence 34999999999985 999999999999998865 358999999998654
No 126
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.54 E-value=3.9e-16 Score=141.59 Aligned_cols=137 Identities=20% Similarity=0.163 Sum_probs=82.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---CCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccch
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIG---GKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS 140 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~---Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (348)
++++++|+||||||||||+++|+ |+..|+.|.+.++|.... ..+ ...+....+........+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~--------~~~-------~~~i~~~~~~~~~~~~~~ 90 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS--------TEV-------GEMAKQYIEKSLLVPDHV 90 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT--------CHH-------HHHHHHHHHTTCCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC--------ChH-------HHHHHHHHHcCCCCCHHH
Confidence 47999999999999999999999 998888887766553210 000 001110000111111111
Q ss_pred HHHHH-hc----------cCCC--CHHHHHHHHHH--cC------------CC--cCccCCCCCHHHHHHHHHHHHH-cc
Q 018938 141 AEKMI-FG----------VAGI--DPQRRAELIKV--LD------------ID--LSWRMHKVSDGQRRRVQICMGL-LK 190 (348)
Q Consensus 141 ~~~~~-~~----------~~~~--~~~~~~~~l~~--l~------------l~--~~~~~~~LSgGqrQRv~lAraL-~~ 190 (348)
..+.+ .. ..+. .......+... ++ +. .++++.+||| |+ +|| +.
T Consensus 91 v~~~l~~~l~~~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~ 163 (246)
T 2bbw_A 91 ITRLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFN 163 (246)
T ss_dssp HHHHHHHHHHTCTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTS
T ss_pred HHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccC
Confidence 11111 00 1111 12222222211 11 11 1456788999 66 777 99
Q ss_pred CCcEEEee----ccCCCCCHHHHHHHHHHHHHHHHh
Q 018938 191 PFKVLLLD----EITVDLDVLARADLLRFLRKECEE 222 (348)
Q Consensus 191 ~P~lLlLD----EPtsgLD~~~~~~l~~~l~~l~~~ 222 (348)
+|++++|| |||++||+.++..+.+.|+++.++
T Consensus 164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred CCcccccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 99999999 999999999999999999988654
No 127
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.51 E-value=2.3e-15 Score=130.63 Aligned_cols=134 Identities=16% Similarity=0.028 Sum_probs=78.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccch
Q 018938 61 TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVS 140 (348)
Q Consensus 61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (348)
.+++|++++|+||||||||||+++|+|. ++.|.|.++|.++..... ...... +.++... ...+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~-----------~~~~~~~--~~~~ 67 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDP-----------WLPQSHQ--QNRM 67 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCT-----------TSSSHHH--HHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccC-----------Cccchhh--hhHH
Confidence 4789999999999999999999999997 788999998865422110 000111 1111100 0111
Q ss_pred HHHHH-h-----ccCCCCHHHHHHHHHHcCCC----cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHH
Q 018938 141 AEKMI-F-----GVAGIDPQRRAELIKVLDID----LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA 210 (348)
Q Consensus 141 ~~~~~-~-----~~~~~~~~~~~~~l~~l~l~----~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~ 210 (348)
..+.+ . ...+.. ..++.++..+++. ....+..+|+|++|++++||++..+|+++ +|+....
T Consensus 68 v~~~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~ 138 (191)
T 1zp6_A 68 IMQIAADVAGRYAKEGYF-VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVA 138 (191)
T ss_dssp HHHHHHHHHHHHHHTSCE-EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHH
T ss_pred HHHHHHHHHHHHhccCCe-EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHH
Confidence 11111 0 000000 0000000000110 02345679999999999999999999876 6888888
Q ss_pred HHHHHHHHHH
Q 018938 211 DLLRFLRKEC 220 (348)
Q Consensus 211 ~l~~~l~~l~ 220 (348)
.+++.+..+.
T Consensus 139 ~~~~~~~~l~ 148 (191)
T 1zp6_A 139 DLHSQFADLG 148 (191)
T ss_dssp HHHHHTTCCG
T ss_pred HHHHHHhccC
Confidence 8888776653
No 128
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.50 E-value=2.1e-16 Score=150.36 Aligned_cols=66 Identities=20% Similarity=0.188 Sum_probs=60.4
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF 104 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~ 104 (348)
+|+++++++.|+ ...+|+++||++.+|++++|+||||||||||+++|+|++.|+.|+|.+.|.++.
T Consensus 29 ~ie~~~~~~~~~---------~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 29 LAESRRADHRAA---------VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS 94 (337)
T ss_dssp HHTCSSHHHHHH---------HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred HHeeCCcccccC---------hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCc
Confidence 588999999994 357999999999999999999999999999999999999999999999987653
No 129
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.50 E-value=2.5e-15 Score=146.49 Aligned_cols=162 Identities=17% Similarity=0.158 Sum_probs=91.6
Q ss_pred eeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcc
Q 018938 55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVP 134 (348)
Q Consensus 55 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (348)
-++++|+++.|++++|+|+||||||||+++|+|..+ .+.+.+..... ..+.++...-...+.+ .+.+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl~-----p~~G~V~~~~~~~~~l--~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTLS-----PNLGVVEVSEEERFTL--ADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSSC-----CEEEEEECSSSCEEEE--EECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccceec-----ceeeEEEecCcceEEE--Eecc
Confidence 479999999999999999999999999999999732 12222110000 0000000000000000 0000
Q ss_pred ccccchHHHHHhccCCCCHHH------HHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHH
Q 018938 135 IQMDVSAEKMIFGVAGIDPQR------RAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLA 208 (348)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~------~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~ 208 (348)
-.... ........... ...++..+++. ..++.+||+|++|++.+|++|+..|.+|++ |.+|+..
T Consensus 214 Gli~~-----a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 214 GIIEG-----ASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp CCCCC-----GGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred ccccc-----hhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 00000 00000011110 11122233443 456778999999999999999999999999 9999987
Q ss_pred HHHHHHHHHHHHHhcCcEEEEEe-cChhhhhhh
Q 018938 209 RADLLRFLRKECEERGATIIYAT-HIFDGLENW 240 (348)
Q Consensus 209 ~~~l~~~l~~l~~~~g~tviivt-Hd~~~~~~~ 240 (348)
. ..++.+.+..++.+.+++++| |.-+-+..+
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL 315 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSALTGAGLPAL 315 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHH
Confidence 7 455555555555577776665 444434433
No 130
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.49 E-value=2.4e-14 Score=120.29 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=35.8
Q ss_pred HccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcE-EEEEecC
Q 018938 188 LLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT-IIYATHI 233 (348)
Q Consensus 188 L~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~t-viivtHd 233 (348)
++.+|++||+|||++ ++...+..+++++.++.+ .|++ +|++||.
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~-~g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRN-SGKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHH-HTCCEEEEEESS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHH-cCCcEEEEECCC
Confidence 467899999999998 666668889999988764 4777 8888884
No 131
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.48 E-value=1.8e-16 Score=134.78 Aligned_cols=63 Identities=17% Similarity=0.017 Sum_probs=55.2
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeec
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSA 103 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~ 103 (348)
++.+++++.|+ ++.+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|..+
T Consensus 8 ~~~~~~~~~~g---------~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 8 IPDEFSMLRFG---------KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTL 70 (158)
T ss_dssp ECSHHHHHHHH---------HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTC
T ss_pred cCCHHHHHHHH---------HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEee
Confidence 44557788884 467999999999999999999999999999999999998 9999998888644
No 132
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.47 E-value=8.4e-14 Score=131.74 Aligned_cols=170 Identities=17% Similarity=0.101 Sum_probs=99.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhh--hcCCCcccccc
Q 018938 61 TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVA--FAGFEVPIQMD 138 (348)
Q Consensus 61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 138 (348)
..++|++++|+||||||||||+++|+|++.|+.|+|.+.|.+++...... + ...+.+.++ +..+.....+.
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~e---q----l~~~~~~~gv~~v~q~~~~~p~ 197 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIE---Q----LEEHAKRIGVKVIKHSYGADPA 197 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHH---H----HHHHHHHTTCEEECCCTTCCHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHH---H----HHHHHHHcCceEEeccccCCHH
Confidence 34789999999999999999999999999999999999988764321110 0 011223333 33232222222
Q ss_pred chHHHHH-hccC-CCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHH
Q 018938 139 VSAEKMI-FGVA-GIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFL 216 (348)
Q Consensus 139 ~~~~~~~-~~~~-~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l 216 (348)
.++.+.+ +... +.+ .-+++..|.. +.-..=+.+.-.+++++..++.+++||.+|. ..+.+.+
T Consensus 198 ~~v~e~l~~~~~~~~d----~vliDtaG~~-----~~~~~l~~eL~~i~ral~~de~llvLDa~t~-------~~~~~~~ 261 (328)
T 3e70_C 198 AVAYDAIQHAKARGID----VVLIDTAGRS-----ETNRNLMDEMKKIARVTKPNLVIFVGDALAG-------NAIVEQA 261 (328)
T ss_dssp HHHHHHHHHHHHHTCS----EEEEEECCSC-----CTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-------THHHHHH
T ss_pred HHHHHHHHHHHhccch----hhHHhhccch-----hHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-------HHHHHHH
Confidence 2222221 1100 000 0001111111 0011123333458999999999999996554 2555666
Q ss_pred HHHHHhcCcEEEEEecChh---------hhhhhCCEEEEEcCCEEe
Q 018938 217 RKECEERGATIIYATHIFD---------GLENWPSHIVYVAHGKLQ 253 (348)
Q Consensus 217 ~~l~~~~g~tviivtHd~~---------~~~~~~d~v~~l~~G~i~ 253 (348)
+.+.+..+.|+|++||.-. .+....-.|.++..|+-+
T Consensus 262 ~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 262 RQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 6776667999999999542 233445677888888754
No 133
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.45 E-value=2.7e-16 Score=153.41 Aligned_cols=139 Identities=11% Similarity=0.016 Sum_probs=81.5
Q ss_pred ceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccc-ccc---cCcccccchhhhhhhhh
Q 018938 53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTA-LTS---SGDLSYLGGEWRREVAF 128 (348)
Q Consensus 53 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~ 128 (348)
.+|+++ + ..+|++++|+|||||||||||++|+|++.|+.|.|.+.|.++..... ... ...+.+......+ .+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr--~~ 232 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR--AI 232 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH--HH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHH--HH
Confidence 356666 4 37899999999999999999999999999999999988765421100 000 0001110000000 01
Q ss_pred cCCCccc--ccc----chHHHHH-hc---------cCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCC
Q 018938 129 AGFEVPI--QMD----VSAEKMI-FG---------VAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPF 192 (348)
Q Consensus 129 ~~~~~~~--~~~----~~~~~~~-~~---------~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P 192 (348)
..+.+.. ... .+....+ +. ....+.......+..+++.....+..|||||+|| |||+|+.+|
T Consensus 233 Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~~~~LSgg~~QR--LaraL~~~p 310 (418)
T 1p9r_A 233 LRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQR--LVRTLCPDC 310 (418)
T ss_dssp GGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHHHHHHEEEEEEEE--EEEEECTTT
T ss_pred hccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHHHHHHHHHHHHHH--hhhhhcCCC
Confidence 1121111 111 2333221 11 1111222333456667776545678899999999 999999999
Q ss_pred cEEEe
Q 018938 193 KVLLL 197 (348)
Q Consensus 193 ~lLlL 197 (348)
+++.-
T Consensus 311 ~~~~~ 315 (418)
T 1p9r_A 311 KEPYE 315 (418)
T ss_dssp CEEEE
T ss_pred CccCC
Confidence 98763
No 134
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.45 E-value=1.6e-15 Score=143.01 Aligned_cols=163 Identities=19% Similarity=0.046 Sum_probs=91.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC--------cCCCceEEEcCeecccccc-cc--ccCcccc-cchhhhhhhhhc---C
Q 018938 66 DRCLLVGSNGAGKTTILKIIGGKH--------MVEPEMVKVLGRSAFHDTA-LT--SSGDLSY-LGGEWRREVAFA---G 130 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~Gl~--------~~~~G~i~i~G~~~~~~~~-~~--~~~~~~~-~~~~~~~~~~~~---~ 130 (348)
++++|+|+||||||||+|+|+|+. .|+.|+|.++|..+..... .. ..+.+.. ....+...+.+. .
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999986 7899999999986532110 00 0000000 001122222221 0
Q ss_pred C------Cccccccch---HHHHHhccCCCCHHHH-----HHHHHHcCCC-cCccCCCCCHHHHHHHHHHHHHccCCcEE
Q 018938 131 F------EVPIQMDVS---AEKMIFGVAGIDPQRR-----AELIKVLDID-LSWRMHKVSDGQRRRVQICMGLLKPFKVL 195 (348)
Q Consensus 131 ~------~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~l~~l~l~-~~~~~~~LSgGqrQRv~lAraL~~~P~lL 195 (348)
+ ......... ...+...+.. ..... ..++..+++. ......+||+||+||+..+++++.+|+++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~-~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~dl~ 163 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFS-HEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVA 163 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHH-SHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTTTC
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhc-CccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcccC
Confidence 1 100000000 0010000000 00000 0011112221 11223379999999999999999999987
Q ss_pred EeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCC
Q 018938 196 LLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPS 242 (348)
Q Consensus 196 lLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d 242 (348)
||| ..+.+.|+++. .+.+|+++||+...+..+.|
T Consensus 164 --de~---------~~l~~~l~~l~--~~~~ii~~sh~~~~~~~l~~ 197 (318)
T 1nij_A 164 --GEA---------EKLHERLARIN--ARAPVYTVTHGDIDLGLLFN 197 (318)
T ss_dssp --SCT---------HHHHHHHHHHC--SSSCEEECCSSCCCGGGGSC
T ss_pred --CHH---------HHHHHHHHHhC--CCCeEEEecccCCCHHHHhC
Confidence 999 67888888864 48899999997655555443
No 135
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.43 E-value=9.9e-16 Score=131.80 Aligned_cols=137 Identities=15% Similarity=0.103 Sum_probs=79.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCC---CceEEEcCeeccccccccccCcccccchhhh-hhhh----hcCCCccccc
Q 018938 66 DRCLLVGSNGAGKTTILKIIGGKHMVE---PEMVKVLGRSAFHDTALTSSGDLSYLGGEWR-REVA----FAGFEVPIQM 137 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~Gl~~~~---~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~ 137 (348)
++++|+|+||||||||+++|+|++.|+ .|.|.++|.++..... .+ ...++ +.++ +..++...+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~---~~-----~d~~r~~~ig~~~~~~~~~~~~~i 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDK---EG-----KDSWKIYNSGADVVIASPVKLAFI 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--------------------CHHHHHHHHTCEEEEECSSEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCc---cc-----hhHHHHHhcCCceEEECCCcEEEE
Confidence 589999999999999999999999888 7999998875322100 00 01233 2344 3333222110
Q ss_pred cchHHHHHhccCCCCHH---HHHHHHHH-cCCCcCcc-CCCCCHHHHHHHHHHHHHccCCcEE-------EeeccCC---
Q 018938 138 DVSAEKMIFGVAGIDPQ---RRAELIKV-LDIDLSWR-MHKVSDGQRRRVQICMGLLKPFKVL-------LLDEITV--- 202 (348)
Q Consensus 138 ~~~~~~~~~~~~~~~~~---~~~~~l~~-l~l~~~~~-~~~LSgGqrQRv~lAraL~~~P~lL-------lLDEPts--- 202 (348)
. . .+.+ ...++++. +. ..+.. ...|||||+||++||||++.+|++. +=|.|..
T Consensus 75 ~----------~-~~~~~~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~ 142 (171)
T 2f1r_A 75 R----------R-VSEEEGNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHK 142 (171)
T ss_dssp E----------E-CCHHHHTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSC
T ss_pred e----------c-CChhhhhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCc
Confidence 0 0 0111 23445544 43 22222 2349999999999999999999873 2345432
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 018938 203 DLDVLARADLLRFLRKECEE 222 (348)
Q Consensus 203 gLD~~~~~~l~~~l~~l~~~ 222 (348)
-+|......+.+++.+..++
T Consensus 143 ~f~~~~~~~~a~~i~~~~~~ 162 (171)
T 2f1r_A 143 WFRRDEVERIAEFILSLLRE 162 (171)
T ss_dssp EECTTCHHHHHHHHHHHHTC
T ss_pred ccCcccHHHHHHHHHHHHhc
Confidence 23444556788888776655
No 136
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.42 E-value=2.3e-17 Score=164.99 Aligned_cols=177 Identities=13% Similarity=0.071 Sum_probs=102.2
Q ss_pred ceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccc-----cccCcccccchhhhhh--
Q 018938 53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTAL-----TSSGDLSYLGGEWRRE-- 125 (348)
Q Consensus 53 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~-----~~~~~~~~~~~~~~~~-- 125 (348)
.++++++|.+++|++++|+||||||||||+++|+|+++|+.|.|++.|..-...... .....+......+...
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 467889999999999999999999999999999999999999999988642211000 0000000000000000
Q ss_pred -hhhcCCCccccccchHHHH------Hh-ccCCC---CHHHHHHHHHHcC-----CCc------C---ccCCCCCHHHHH
Q 018938 126 -VAFAGFEVPIQMDVSAEKM------IF-GVAGI---DPQRRAELIKVLD-----IDL------S---WRMHKVSDGQRR 180 (348)
Q Consensus 126 -~~~~~~~~~~~~~~~~~~~------~~-~~~~~---~~~~~~~~l~~l~-----l~~------~---~~~~~LSgGqrQ 180 (348)
......+......+...+. .. +.... ......++++++. +.. + .....+|+||+|
T Consensus 328 ~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~ 407 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRL 407 (511)
T ss_dssp TTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEE
T ss_pred HhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCce
Confidence 0000001011111111111 11 11000 0011223333332 210 1 123458999999
Q ss_pred HHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEE--EecChhhhhhhCC
Q 018938 181 RVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIY--ATHIFDGLENWPS 242 (348)
Q Consensus 181 Rv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tvii--vtHd~~~~~~~~d 242 (348)
|+++|. + | |+|||+.....+++.|.++.. .+.|+++ +||+++++...|+
T Consensus 408 R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~-~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 408 RRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDP-KEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEEEE----------E-E-EEECCSSSSCCEEEEEEEEET-TTTEEEECSCCTHHHHHHHHHT
T ss_pred EEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcc-cCCEEEEcccHHHHHHHHHHcC
Confidence 987651 1 7 999999888878777777643 4789885 9999999998874
No 137
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.40 E-value=7.3e-14 Score=137.86 Aligned_cols=165 Identities=18% Similarity=0.140 Sum_probs=93.3
Q ss_pred eeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcc
Q 018938 55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVP 134 (348)
Q Consensus 55 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (348)
-+++||++++|++++|+|+||||||||+++|+|++.++.|+|.+.|.+.+..... .++.. ...+..++++.+...
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~---eQL~~--~~~r~~I~vV~Q~~~ 357 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAV---EQLQV--WGQRNNIPVIAQHTG 357 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHH---HHHHH--HHHHHTCCEECCSTT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhH---HHHHH--HHHhcCceEEecccC
Confidence 4689999999999999999999999999999999999999999987654321000 00000 001334555544332
Q ss_pred ccccchHHHHH-hcc-CCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHc-cCC-cEEEeeccCCCCCHHHHH
Q 018938 135 IQMDVSAEKMI-FGV-AGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLL-KPF-KVLLLDEITVDLDVLARA 210 (348)
Q Consensus 135 ~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~-~~P-~lLlLDEPtsgLD~~~~~ 210 (348)
.....+..+.+ +.. .+.+ .-+++..|.... -..|-.-.+|++.+++++. ..| ++||...||+|.|..
T Consensus 358 ~~p~~tV~e~l~~a~~~~~D----vVLIDTaGrl~~--~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al--- 428 (503)
T 2yhs_A 358 ADSASVIFDAIQAAKARNID----VLIADTAGRLQN--KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV--- 428 (503)
T ss_dssp CCHHHHHHHHHHHHHHTTCS----EEEECCCCSCCC--HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH---
T ss_pred cCHHHHHHHHHHHHHhcCCC----EEEEeCCCccch--hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH---
Confidence 22222222221 110 0000 000011111100 0011123357888998774 457 355555588886553
Q ss_pred HHHHHHHHHHHhcCcEEEEEecChhhh
Q 018938 211 DLLRFLRKECEERGATIIYATHIFDGL 237 (348)
Q Consensus 211 ~l~~~l~~l~~~~g~tviivtHd~~~~ 237 (348)
+.++.+.+..+.|.|++|| ++..
T Consensus 429 ---~~ak~f~~~~~itgvIlTK-LD~t 451 (503)
T 2yhs_A 429 ---SQAKLFHEAVGLTGITLTK-LDGT 451 (503)
T ss_dssp ---HHHHHHHHHTCCSEEEEEC-GGGC
T ss_pred ---HHHHHHHhhcCCCEEEEEc-CCCc
Confidence 3345555556899999999 4543
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.38 E-value=6.7e-13 Score=125.96 Aligned_cols=144 Identities=19% Similarity=0.173 Sum_probs=74.9
Q ss_pred EEEEECCCCCcHHHHHHHHhC-CCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHH
Q 018938 67 RCLLVGSNGAGKTTILKIIGG-KHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMI 145 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~G-l~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (348)
.+.|+||||+|||||+++|+| ++.|+.|.+.++|........ ....+.+..+..........
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~---- 100 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN-------------RKLELNVVSSPYHLEITPSD---- 100 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------------------------CCEECSSEEEECCC-----
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc-------------ccceeeeecccceEEecHhh----
Confidence 389999999999999999999 788899999888764321100 01112222111111000000
Q ss_pred hccCCCCHHHHHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhc
Q 018938 146 FGVAGIDPQRRAELIKVLDID--LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEER 223 (348)
Q Consensus 146 ~~~~~~~~~~~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~ 223 (348)
..........+.++.+... ..... .||| +..+|+++|+|||++ ||+..+..+++.|.+.. .
T Consensus 101 --~~~~~~~~~~~~i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~ 163 (354)
T 1sxj_E 101 --MGNNDRIVIQELLKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--K 163 (354)
T ss_dssp -----CCHHHHHHHHHHHTTTTC------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST--T
T ss_pred --cCCcchHHHHHHHHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--C
Confidence 0001111233333333211 11111 5676 788999999999999 99999999999998763 3
Q ss_pred CcEEEEEecChhhhh-hhCCEE
Q 018938 224 GATIIYATHIFDGLE-NWPSHI 244 (348)
Q Consensus 224 g~tviivtHd~~~~~-~~~d~v 244 (348)
+.++|++||+.+.+. .+.+|+
T Consensus 164 ~~~~Il~t~~~~~l~~~l~sR~ 185 (354)
T 1sxj_E 164 NIRLIMVCDSMSPIIAPIKSQC 185 (354)
T ss_dssp TEEEEEEESCSCSSCHHHHTTS
T ss_pred CCEEEEEeCCHHHHHHHHHhhc
Confidence 789999999976542 333443
No 139
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.38 E-value=1.9e-12 Score=116.11 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=47.8
Q ss_pred cCCcEEEeeccCCCC--CHHHHHHHHHHHHHHHHhcCcEEEEEecChhh--------hhhhCCEEEEEcC
Q 018938 190 KPFKVLLLDEITVDL--DVLARADLLRFLRKECEERGATIIYATHIFDG--------LENWPSHIVYVAH 249 (348)
Q Consensus 190 ~~P~lLlLDEPtsgL--D~~~~~~l~~~l~~l~~~~g~tviivtHd~~~--------~~~~~d~v~~l~~ 249 (348)
.+|+++++|+|++.+ |+.....++..|.+++++.|+|||+++|.... ++++||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 66555666666777777789999999998876 4678999999864
No 140
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.37 E-value=1.4e-15 Score=133.70 Aligned_cols=56 Identities=7% Similarity=0.014 Sum_probs=43.9
Q ss_pred HHH-HHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEEc
Q 018938 184 ICM-GLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYVA 248 (348)
Q Consensus 184 lAr-aL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l~ 248 (348)
.|+ +++.+|.+++|||||+++|..+.+.+.+.|.+..++ +.++|. . ..+|+|++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-----~~~a~~--~--~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-----MESSKE--P--GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-----TTGGGS--T--TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HHHhhc--c--CCceEEEECC
Confidence 566 788899999999999999999999999988876543 234561 1 5689988775
No 141
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.35 E-value=7.2e-13 Score=126.39 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=68.7
Q ss_pred eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCc-CCCceEEEc-CeeccccccccccCcccccchhhhhhhhhcCC
Q 018938 54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHM-VEPEMVKVL-GRSAFHDTALTSSGDLSYLGGEWRREVAFAGF 131 (348)
Q Consensus 54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~-~~~G~i~i~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (348)
-++++++. .+|++++|+||||||||||+|+|+|+.. |..|.|.+. |..... ... ..+++.++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t----t~~-----------~~i~~v~q 268 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT----TTA-----------ARLYHFPH 268 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CC-----------CEEEECTT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc----eEE-----------EEEEEECC
Confidence 46777775 4899999999999999999999999999 999999876 543210 000 11223322
Q ss_pred CccccccchHHHHHhccCCCCHHH----HHHHHHHcCCC--cCccCCCCCHHHHHHHHHHHHH
Q 018938 132 EVPIQMDVSAEKMIFGVAGIDPQR----RAELIKVLDID--LSWRMHKVSDGQRRRVQICMGL 188 (348)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~l~l~--~~~~~~~LSgGqrQRv~lAraL 188 (348)
...+....+..+ +.+.....+. ..++++.+++. .+..+.+|| ||+||++||+++
T Consensus 269 ~~~l~dtpgv~e--~~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 269 GGDVIDSPGVRE--FGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp SCEEEECHHHHT--CCCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred CCEecCcccHHH--hhhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 222222222322 1222333322 23556666764 366788999 999999999875
No 142
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.33 E-value=1.4e-14 Score=139.95 Aligned_cols=175 Identities=11% Similarity=-0.012 Sum_probs=101.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC------------CCcCCCceEEEcCeecccccc-ccccCcccccchhhhhhhh
Q 018938 61 TLNAGDRCLLVGSNGAGKTTILKIIGG------------KHMVEPEMVKVLGRSAFHDTA-LTSSGDLSYLGGEWRREVA 127 (348)
Q Consensus 61 ~i~~Ge~~~liG~NGsGKSTLlk~i~G------------l~~~~~G~i~i~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 127 (348)
.+++|..++|+|+||||||||+|+|+| ...|+.|.+.+.|..+..... ......+... ..+....+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~-i~lvD~pG 94 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAF-LTVFDIAG 94 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEE-EEEECTGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcc-eEEEeccc
Confidence 457899999999999999999999999 455777888776632100000 0000000000 00000000
Q ss_pred hcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCC--cEEEeeccCCCCC
Q 018938 128 FAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPF--KVLLLDEITVDLD 205 (348)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P--~lLlLDEPtsgLD 205 (348)
+.... .....+. ..+...... .+.++..++...+..+..+||+. +| +++++|||++++|
T Consensus 95 l~~~~-s~~e~L~-~~fl~~ir~-----~d~il~Vvd~~~d~~i~~v~~~~------------dP~~di~ildeel~~~D 155 (392)
T 1ni3_A 95 LTKGA-STGVGLG-NAFLSHVRA-----VDAIYQVVRAFDDAEIIHVEGDV------------DPIRDLSIIVDELLIKD 155 (392)
T ss_dssp GCCCC-CSSSSSC-HHHHHHHTT-----CSEEEEEEECCCTTCSSCCSSSS------------CHHHHHHHHHHHHHHHH
T ss_pred cccCC-cHHHHHH-HHHHHHHHH-----HHHHHHHHhccccceeeeecccc------------CcchhhhhchhhhHHHH
Confidence 00000 0000000 000000000 00011112222234445567653 99 9999999999999
Q ss_pred HHHHHHHHHHHHHH-HHhcCcEEEEEecChhhhhhhCCEEE-EEcCC-EEeeecCh
Q 018938 206 VLARADLLRFLRKE-CEERGATIIYATHIFDGLENWPSHIV-YVAHG-KLQLAMPM 258 (348)
Q Consensus 206 ~~~~~~l~~~l~~l-~~~~g~tviivtHd~~~~~~~~d~v~-~l~~G-~i~~~g~~ 258 (348)
+......++.+... .+ .|.||+ +|++..+..+|+++. +|.+| +++..++.
T Consensus 156 ~~~~~k~~~~l~~~~~~-~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 156 AEFVEKHLEGLRKITSR-GANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHTTCC-SSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred HHHHHHHHHHHHHHHHh-cCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 99999999999887 43 477754 999999999999999 99999 88766543
No 143
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.31 E-value=6.1e-16 Score=146.85 Aligned_cols=171 Identities=20% Similarity=0.188 Sum_probs=101.1
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCC-------CEEEEECCCCCcHHHHHHHHhCCC----cCCCceEEE
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAG-------DRCLLVGSNGAGKTTILKIIGGKH----MVEPEMVKV 98 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~G-------e~~~liG~NGsGKSTLlk~i~Gl~----~~~~G~i~i 98 (348)
+++.++++..|+ ...+++++++.+.+| +.++|+||||+|||||+++|+|.+ .+.+|.+..
T Consensus 18 ~lr~~~l~~~~g---------~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~ 88 (334)
T 1in4_A 18 FLRPKSLDEFIG---------QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88 (334)
T ss_dssp TTSCSSGGGCCS---------CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC
T ss_pred HcCCccHHHccC---------cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc
Confidence 356678887773 457899999999887 899999999999999999999976 344443332
Q ss_pred cCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHhc---cCCC--------CHHHHHHHHHHcCCC-
Q 018938 99 LGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFG---VAGI--------DPQRRAELIKVLDID- 166 (348)
Q Consensus 99 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--------~~~~~~~~l~~l~l~- 166 (348)
.+.++.. .........+.++++...+.. +..+.++. .... ....+...+..+++.
T Consensus 89 ~~~~l~~-----------~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 89 KQGDMAA-----------ILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp SHHHHHH-----------HHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred CHHHHHH-----------HHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 2211100 000000112333322111111 22232211 0110 011122223333332
Q ss_pred cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCE
Q 018938 167 LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSH 243 (348)
Q Consensus 167 ~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~ 243 (348)
...++..||+|++||++++ .+||+....++.++|++.++..+ ++|+.+.+..+|++
T Consensus 156 at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAKR 211 (334)
T ss_dssp EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHHT
T ss_pred ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHHh
Confidence 3456789999999998655 78888889999999998876655 47888888877764
No 144
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.31 E-value=2.6e-12 Score=119.79 Aligned_cols=132 Identities=19% Similarity=0.124 Sum_probs=89.2
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccc
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALT 110 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~ 110 (348)
+.++++++.|+. .. ++++|+ +|++++|+|+||+||||+++.|+|++.+..|+|.+.+.+.....
T Consensus 77 ~~~~~l~~~~~~---------~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~--- 140 (295)
T 1ls1_A 77 TVYEALKEALGG---------EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA--- 140 (295)
T ss_dssp HHHHHHHHHTTS---------SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH---
T ss_pred HHHHHHHHHHCC---------CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHh---
Confidence 456788888842 22 788888 99999999999999999999999998888888877664321100
Q ss_pred ccCcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHcc
Q 018938 111 SSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLK 190 (348)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~ 190 (348)
.. ..+ ..+.+..++..-......+-.+.+|.+|+++...
T Consensus 141 ---------------~~--------------~ql------------~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~ 179 (295)
T 1ls1_A 141 ---------------AR--------------EQL------------RLLGEKVGVPVLEVMDGESPESIRRRVEEKARLE 179 (295)
T ss_dssp ---------------HH--------------HHH------------HHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred ---------------HH--------------HHH------------HHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 00 000 0011222332100000123334578999999889
Q ss_pred CCcEEEeecc-CCCCCHHHHHHHHHHHHHH
Q 018938 191 PFKVLLLDEI-TVDLDVLARADLLRFLRKE 219 (348)
Q Consensus 191 ~P~lLlLDEP-tsgLD~~~~~~l~~~l~~l 219 (348)
+++++|+||| ++++|......+..+...+
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 9999999999 9999998777777766543
No 145
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.31 E-value=1e-12 Score=123.17 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=80.8
Q ss_pred eeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcccc
Q 018938 57 DFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQ 136 (348)
Q Consensus 57 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (348)
.++|...+|++++|+|+|||||||+++.|++.+.+..|+|.+.+.+.+.. +.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~--------------------~a-------- 147 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA--------------------AA-------- 147 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH--------------------HH--------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH--------------------HH--------
Confidence 45677789999999999999999999999999888777777655432100 00
Q ss_pred ccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHH---HHHHHHccCCcEEEeeccCCCCCHHHHHHHH
Q 018938 137 MDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRV---QICMGLLKPFKVLLLDEITVDLDVLARADLL 213 (348)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv---~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~ 213 (348)
. +....+.+.+++.. +..+|+|+.|++ +|++++..+|+++|+|||.. ......++
T Consensus 148 ----~------------eqL~~~~~~~gl~~---~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~ 205 (306)
T 1vma_A 148 ----I------------EQLKIWGERVGATV---ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLM 205 (306)
T ss_dssp ----H------------HHHHHHHHHHTCEE---ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHH
T ss_pred ----H------------HHHHHHHHHcCCcE---EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHH
Confidence 0 01122333444432 346789999999 99999999999999999974 34455666
Q ss_pred HHHHHHH
Q 018938 214 RFLRKEC 220 (348)
Q Consensus 214 ~~l~~l~ 220 (348)
+.|.++.
T Consensus 206 ~eL~~l~ 212 (306)
T 1vma_A 206 EELRKVH 212 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666553
No 146
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.30 E-value=1.1e-13 Score=128.95 Aligned_cols=124 Identities=14% Similarity=0.071 Sum_probs=69.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc----eEEE-cCeeccccccccccCcccccchhhhhhhhhcCCCccccc
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE----MVKV-LGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQM 137 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G----~i~i-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (348)
.++.+++|+|++|||||||++.|++++.+. | .+.+ .-... +.....+..+.+.....+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~~~~~~~iv~~D~f-------------~~~~~~~~~l~~~~~~~~l~~ 94 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YGGEKSIGYASIDDF-------------YLTHEDQLKLNEQFKNNKLLQ 94 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HGGGSCEEEEEGGGG-------------BCCHHHHHHHHHHTTTCGGGS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CCCCceEEEeccccc-------------cCChHHHHHHhccccccchhh
Confidence 467899999999999999999999986542 1 1111 00000 000000111111000000000
Q ss_pred cchHHHHHhccC-CCCHHHHHHHHHHcCCC----------cCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCH
Q 018938 138 DVSAEKMIFGVA-GIDPQRRAELIKVLDID----------LSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDV 206 (348)
Q Consensus 138 ~~~~~~~~~~~~-~~~~~~~~~~l~~l~l~----------~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~ 206 (348)
..+.+ ..+.....+.++.+... ...+...+||||+||+.+|++...+|+|||+||||+++|+
T Consensus 95 -------~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~ 167 (290)
T 1odf_A 95 -------GRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNP 167 (290)
T ss_dssp -------SSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCC
T ss_pred -------hccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCc
Confidence 00011 12334455556655332 1234478999999999998433339999999999999998
Q ss_pred H
Q 018938 207 L 207 (348)
Q Consensus 207 ~ 207 (348)
.
T Consensus 168 ~ 168 (290)
T 1odf_A 168 I 168 (290)
T ss_dssp C
T ss_pred c
Confidence 5
No 147
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.30 E-value=1.8e-14 Score=135.24 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=56.1
Q ss_pred CeEEEeceEEEecCCCCCCCCCCCceeeeeeeEE-------------------eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 29 PTVEINALKFTYPGIDGHPPPGSTPLINDFTLTL-------------------NAGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 29 ~~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i-------------------~~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
.+|+++||++.|. +++++++|.+ .+|+++||+||||||||||+++|+|++
T Consensus 36 ~~i~~~~v~~~y~-----------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 36 EDLSLEEVAEIYL-----------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp TTCCHHHHHHTHH-----------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cccchHhHHHHHH-----------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999993 6899999988 999999999999999999999999988
Q ss_pred c--CCCceEEE---cCe
Q 018938 90 M--VEPEMVKV---LGR 101 (348)
Q Consensus 90 ~--~~~G~i~i---~G~ 101 (348)
. |++|+|.+ +|.
T Consensus 105 ~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 105 SRWPEHRRVELITTDGF 121 (308)
T ss_dssp TTSTTCCCEEEEEGGGG
T ss_pred hhCCCCCeEEEEecCCc
Confidence 7 89999988 664
No 148
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.29 E-value=3.8e-15 Score=133.71 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=22.9
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHh-CCCc
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG-GKHM 90 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~-Gl~~ 90 (348)
.+..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 35678999999999999999999999999999999 9863
No 149
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.26 E-value=3.3e-12 Score=119.18 Aligned_cols=141 Identities=14% Similarity=0.179 Sum_probs=86.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc-eEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchH
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE-MVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSA 141 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G-~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (348)
.+|++++|+|||||||||+++.|++.+.++.| .|.+.+.+.+.. ..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~---------------------------------~a 149 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRI---------------------------------AA 149 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSST---------------------------------TH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccc---------------------------------hH
Confidence 47999999999999999999999998877677 555433221100 00
Q ss_pred HHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHH-
Q 018938 142 EKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC- 220 (348)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~- 220 (348)
.+ ......+.+++.... ..+ +..-+.+|++ +.+|+++|+| |+|+|+.....+.++.+-+.
T Consensus 150 ~e-----------qL~~~~~~~gl~~~~---~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~ 210 (296)
T 2px0_A 150 VE-----------QLKTYAELLQAPLEV---CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPF 210 (296)
T ss_dssp HH-----------HHHHHHTTTTCCCCB---CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred HH-----------HHHHHHHhcCCCeEe---cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence 00 000111112222100 112 2334566664 4999999999 99999876655554443221
Q ss_pred -HhcCcEEEE-EecChhhhhhhCCEEEEEcCCEEeee
Q 018938 221 -EERGATIIY-ATHIFDGLENWPSHIVYVAHGKLQLA 255 (348)
Q Consensus 221 -~~~g~tvii-vtHd~~~~~~~~d~v~~l~~G~i~~~ 255 (348)
...+.++++ +||..+.+.++|+++..+..+.++..
T Consensus 211 ~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 211 ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 122334444 49999999999998877777777653
No 150
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.26 E-value=1.7e-12 Score=128.25 Aligned_cols=52 Identities=17% Similarity=0.120 Sum_probs=48.4
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecc
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAF 104 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~ 104 (348)
..+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 3589999999999 999999999999999999999999999999999997643
No 151
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.25 E-value=5.5e-14 Score=124.22 Aligned_cols=138 Identities=16% Similarity=0.048 Sum_probs=81.3
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCCCcCC---CceEEEcCeeccccccccccCcccccchhhhhhhhhcC-CCccccc
Q 018938 62 LNAGDRCLLVGSNGAGKTTILKIIGGKHMVE---PEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAG-FEVPIQM 137 (348)
Q Consensus 62 i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~---~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 137 (348)
.++|++++|+||||||||||+++|+|++.|. .|.|.++|..... ......+... ...+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~---------------~~~~~~~~~~~~~~~~-- 81 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDN---------------RLLEPRGLLPRKGAPE-- 81 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCH---------------HHHGGGTCGGGTTSGG--
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCH---------------HHHHHhcccccCCCCc--
Confidence 5789999999999999999999999998753 5566655532210 0000010000 00000
Q ss_pred cchHHHHHhccCCCCHHHHHHHHHHc--C--C--CcCccCCCCCHHHHHHHHHH-HHHccCCcEEEeeccCCCCCHHHHH
Q 018938 138 DVSAEKMIFGVAGIDPQRRAELIKVL--D--I--DLSWRMHKVSDGQRRRVQIC-MGLLKPFKVLLLDEITVDLDVLARA 210 (348)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~l~~l--~--l--~~~~~~~~LSgGqrQRv~lA-raL~~~P~lLlLDEPtsgLD~~~~~ 210 (348)
..+.....+.+..+ + + ........+|+||+||+++| ++++.++.++++|||..
T Consensus 82 ------------~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-------- 141 (208)
T 3c8u_A 82 ------------TFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-------- 141 (208)
T ss_dssp ------------GBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------
T ss_pred ------------hhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh--------
Confidence 01111122222222 1 1 11122345799999999998 88888888888999841
Q ss_pred HHHHHHHHHHHhcCcEEEEEecChhh-hhhhCCE
Q 018938 211 DLLRFLRKECEERGATIIYATHIFDG-LENWPSH 243 (348)
Q Consensus 211 ~l~~~l~~l~~~~g~tviivtHd~~~-~~~~~d~ 243 (348)
..+.++ --.+++++++.+. +.+++.|
T Consensus 142 ---~~l~~~----~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 142 ---RDLTAI----WDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp ---GGGGGT----CSEEEEECCCHHHHHHHHHHH
T ss_pred ---HHHHHh----cCEEEEEeCCHHHHHHHHHHH
Confidence 111221 2378999999886 5666666
No 152
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.24 E-value=1.4e-11 Score=121.58 Aligned_cols=176 Identities=11% Similarity=0.123 Sum_probs=110.8
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc-eEEEcCeeccccccccccCcccccchhhhhhh-hhc
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE-MVKVLGRSAFHDTALTSSGDLSYLGGEWRREV-AFA 129 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G-~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 129 (348)
.+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.... ...+..++ +..
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s--------------~~~l~~r~~~~~ 255 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS--------------AQQLVMRMLCAE 255 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC--------------HHHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC--------------HHHHHHHHHHHH
Confidence 4678999888999999999999999999999999886544334 3443321100 00111111 000
Q ss_pred CCCccccccchHHHHHhccCCCCH---HHHHHHHHHcCCC-c-CccCCCCCHHHHHHHHHHHHHc--cCCcEEEeeccCC
Q 018938 130 GFEVPIQMDVSAEKMIFGVAGIDP---QRRAELIKVLDID-L-SWRMHKVSDGQRRRVQICMGLL--KPFKVLLLDEITV 202 (348)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~l~l~-~-~~~~~~LSgGqrQRv~lAraL~--~~P~lLlLDEPts 202 (348)
.. +....+..+ .... .+..+.+..++.. . -.....+|.++.+ +.|+.++ .+|+++|+|+++.
T Consensus 256 -~~------~~~~~l~~g--~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 256 -GN------INAQNLRTG--KLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp -HT------CCHHHHHTS--CCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGG
T ss_pred -cC------CCHHHHhcC--CCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHH
Confidence 00 001111111 1122 2233334433321 1 1224679999887 5566665 7899999999998
Q ss_pred CCC--------HHHHHHHHHHHHHHHHhcCcEEEEEec---------C--hh--------hhhhhCCEEEEEcCCEE
Q 018938 203 DLD--------VLARADLLRFLRKECEERGATIIYATH---------I--FD--------GLENWPSHIVYVAHGKL 252 (348)
Q Consensus 203 gLD--------~~~~~~l~~~l~~l~~~~g~tviivtH---------d--~~--------~~~~~~d~v~~l~~G~i 252 (348)
..+ ......+...|+.++++.+++||+++| | +. .+++.||.|++|+.++.
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 774 334467888899998888999999999 3 22 57788999999987754
No 153
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.21 E-value=1.4e-14 Score=133.90 Aligned_cols=144 Identities=16% Similarity=0.132 Sum_probs=83.5
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF 131 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (348)
..++++++|++++| ++|+||||||||||+|+|+|...+ +.+.++|..+.... .+ ...+.+.+.++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~----------~~-~~~~~i~~vf~ 97 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMY----------VG-ESERAVRQVFQ 97 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSST----------TH-HHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhh----------hh-HHHHHHHHHHH
Confidence 46889999999999 999999999999999999997644 78888876432110 00 11111222111
Q ss_pred Cc-cccccch-HHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCC-------
Q 018938 132 EV-PIQMDVS-AEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV------- 202 (348)
Q Consensus 132 ~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPts------- 202 (348)
.. ...+.+. .+++-........... ....-..++.+.+|||||+||+.|++|+.++|++| |||+.
T Consensus 98 ~a~~~~p~i~~~Deid~~~~~r~~~~~----~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~ 171 (274)
T 2x8a_A 98 RAKNSAPCVIFFDEVDALCPRRSDRET----GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK 171 (274)
T ss_dssp HHHHTCSEEEEEETCTTTCC-------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred HHHhcCCCeEeeehhhhhhcccCCCcc----hHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence 00 0000000 0000000000000000 00000013346789999999999999999999975 99964
Q ss_pred -----CCCHHHHHHHHHHH
Q 018938 203 -----DLDVLARADLLRFL 216 (348)
Q Consensus 203 -----gLD~~~~~~l~~~l 216 (348)
-.|...+..+++.+
T Consensus 172 ~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EEECCSCCHHHHHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHHHH
Confidence 34777777776654
No 154
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.21 E-value=1e-12 Score=130.71 Aligned_cols=174 Identities=16% Similarity=0.126 Sum_probs=102.1
Q ss_pred eeeeEEeCCCEEEEECCCCCcHHHHHHHHhC--CCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCcc
Q 018938 57 DFTLTLNAGDRCLLVGSNGAGKTTILKIIGG--KHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVP 134 (348)
Q Consensus 57 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G--l~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (348)
.+++++.++..+.|.|++||||||++++|.. +...+++.+.+.+.+... .. +.. +. .+.... . .
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~-~e------l~~----~~-~lPhl~-~-~ 224 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM-LE------LSV----YE-GIPHLL-T-E 224 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS-SG------GGG----GT-TCTTBS-S-S
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch-hh------hhh----hc-cCCccc-c-e
Confidence 5778889999999999999999999999875 556677887776654321 00 000 00 000000 0 0
Q ss_pred ccccch-HHHHHhccCCCCHHHHHHHHHHcCCCc----Cc-cCCCCCHHHHHHH----------HHHHHHccCCc-EEEe
Q 018938 135 IQMDVS-AEKMIFGVAGIDPQRRAELIKVLDIDL----SW-RMHKVSDGQRRRV----------QICMGLLKPFK-VLLL 197 (348)
Q Consensus 135 ~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~l~~----~~-~~~~LSgGqrQRv----------~lAraL~~~P~-lLlL 197 (348)
...+.. ....+..... ..++..+++...|+.. +. ....+|+||+|+. .+|+++...|. ++++
T Consensus 225 Vvtd~~~a~~~L~~~~~-EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvI 303 (512)
T 2ius_A 225 VVTDMKDAANALRWCVN-EMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLV 303 (512)
T ss_dssp CBCSHHHHHHHHHHHHH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEE
T ss_pred eecCHHHHHHHHHHHHH-HHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEE
Confidence 000000 0111100000 1123345666666531 11 1246788888752 36677788898 8999
Q ss_pred eccCCCCCHHHHHHHHHHHHHH---HHhcCcEEEEEecChh-------hhhhhCCEEEE
Q 018938 198 DEITVDLDVLARADLLRFLRKE---CEERGATIIYATHIFD-------GLENWPSHIVY 246 (348)
Q Consensus 198 DEPtsgLD~~~~~~l~~~l~~l---~~~~g~tviivtHd~~-------~~~~~~d~v~~ 246 (348)
||+++-+|.. ...+.+.|.++ .+..|.++|++||++. ....+.+||.+
T Consensus 304 DE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 304 DEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp ETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred eCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 9999988843 33455555544 4455889999999987 44566677765
No 155
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.18 E-value=9.2e-11 Score=111.84 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=52.1
Q ss_pred HHHHHHHHHccC--CcEEEeeccCCCC----------CH---HHHHHHHHHHHHH---HHhcCcEEEEEecChh------
Q 018938 180 RRVQICMGLLKP--FKVLLLDEITVDL----------DV---LARADLLRFLRKE---CEERGATIIYATHIFD------ 235 (348)
Q Consensus 180 QRv~lAraL~~~--P~lLlLDEPtsgL----------D~---~~~~~l~~~l~~l---~~~~g~tviivtHd~~------ 235 (348)
|-+.++++++.+ |+++|+|||++.+ |+ ...+.+.+.++++ +++.|+|||+++|...
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345677877654 9999999999998 33 1222334444444 4677999999999754
Q ss_pred ----------hhhhhCCEEEEEcCCEEeeec
Q 018938 236 ----------GLENWPSHIVYVAHGKLQLAM 256 (348)
Q Consensus 236 ----------~~~~~~d~v~~l~~G~i~~~g 256 (348)
.+..+||.++.++.+++...|
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 256789999998877654433
No 156
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.14 E-value=2.1e-12 Score=120.89 Aligned_cols=115 Identities=19% Similarity=0.213 Sum_probs=67.6
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEE---cCeeccccccccccCcccccchhhhhhhhhcCCCcc--
Q 018938 60 LTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKV---LGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVP-- 134 (348)
Q Consensus 60 l~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 134 (348)
+++.+|++++|+||||||||||+|+|+ +..|+.|+|.+ +|............ ..++++.+.+.
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~-----------~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPF-----------GKGSFVGDTPGFS 227 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEE-----------TTTEEEESSCCCS
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEc-----------CCCcEEEECcCcC
Confidence 345679999999999999999999999 99999999998 78654322110000 01222211110
Q ss_pred ---ccccchHHHH--Hhc--------c----C-CCCHHHHHHHHHHcCCCc---CccCCCCCHHHHHHHHHHH
Q 018938 135 ---IQMDVSAEKM--IFG--------V----A-GIDPQRRAELIKVLDIDL---SWRMHKVSDGQRRRVQICM 186 (348)
Q Consensus 135 ---~~~~~~~~~~--~~~--------~----~-~~~~~~~~~~l~~l~l~~---~~~~~~LSgGqrQRv~lAr 186 (348)
+...++.+++ .+. + + .....++.++++.+++.. ++++..|||.+++++.|||
T Consensus 228 ~~~l~~~lt~e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 228 KVEATMFVKPREVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp SCCGGGTSCGGGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred cCcccccCCHHHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0011222221 111 1 1 112346788999999863 5578899998899999986
No 157
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.94 E-value=7.4e-10 Score=95.88 Aligned_cols=37 Identities=8% Similarity=0.046 Sum_probs=33.3
Q ss_pred HHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHH
Q 018938 180 RRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRK 218 (348)
Q Consensus 180 QRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~ 218 (348)
+.+.+|++|+.+|+++++| ||++|..+..++++.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 3467899999999999999 999999999999998865
No 158
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.90 E-value=1.2e-09 Score=95.62 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=76.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCCccccccchHHHHHh
Q 018938 67 RCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIF 146 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (348)
+++|+|+|||||||+.++|+++ |...+++.. +.+.+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~-------------------~~~~~~~------------------ 41 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADV-------------------VAREVVA------------------ 41 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHH-------------------HHHHTTC------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHH-------------------HHHHHcc------------------
Confidence 6899999999999999999983 332222110 0000000
Q ss_pred ccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcE
Q 018938 147 GVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGAT 226 (348)
Q Consensus 147 ~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~t 226 (348)
. ......++.+.+|... -.|.|+.+|..++..+..+|+.+..+ ++.++|..+..+.+.+... .+.+
T Consensus 42 --~--~~~~~~~i~~~~g~~~-----~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~ 107 (206)
T 1jjv_A 42 --K--DSPLLSKIVEHFGAQI-----LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPY 107 (206)
T ss_dssp --S--SCHHHHHHHHHHCTTC-----C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSE
T ss_pred --C--ChHHHHHHHHHhCHHH-----hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCE
Confidence 0 0112334555555321 13678999999999988888755443 4456777777666655432 2568
Q ss_pred EEEEecChhhh--hhhCCEEEEEc
Q 018938 227 IIYATHIFDGL--ENWPSHIVYVA 248 (348)
Q Consensus 227 viivtHd~~~~--~~~~d~v~~l~ 248 (348)
||+.+|.+.+. ...||.+++++
T Consensus 108 vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 108 TLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp EEEECTTTTTTTCGGGCSEEEEEE
T ss_pred EEEEechhhhcCcHhhCCEEEEEE
Confidence 99999998776 67799988874
No 159
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.89 E-value=2.1e-11 Score=109.30 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=42.7
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeec
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSA 103 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~ 103 (348)
.|+++|++..|+ . +|+|.+ ++++|+||||||||||+++|+|++.|++|.|.++|.++
T Consensus 9 ~l~l~~~~~~~~---------~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFA---------R-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEE---------E-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEEEeeecccC---------C-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 588888876652 1 455666 89999999999999999999999999999999998764
No 160
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.89 E-value=9.9e-10 Score=95.75 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=31.5
Q ss_pred eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeec
Q 018938 59 TLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSA 103 (348)
Q Consensus 59 sl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~ 103 (348)
|+++++|++++|+||||||||||+++|+|++ | .+.+.+...
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~ 41 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHT 41 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceec
Confidence 6788999999999999999999999999985 3 466666543
No 161
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.88 E-value=2.7e-09 Score=101.76 Aligned_cols=48 Identities=17% Similarity=0.030 Sum_probs=36.1
Q ss_pred ceeeeeee--EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceE-EEcC
Q 018938 53 PLINDFTL--TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMV-KVLG 100 (348)
Q Consensus 53 ~~l~~vsl--~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i-~i~G 100 (348)
+.|+.+-= -+++|+++.|.||||||||||+..+++...+..|.+ ++++
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 44554422 488999999999999999999999998765555654 4443
No 162
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.87 E-value=1.2e-10 Score=105.99 Aligned_cols=52 Identities=25% Similarity=0.393 Sum_probs=35.4
Q ss_pred CeEEEece-EEEecCCCCCCCCCCCceeeeeeeEEeC---CCEEEEECCCCCcHHHHHHHHhCC
Q 018938 29 PTVEINAL-KFTYPGIDGHPPPGSTPLINDFTLTLNA---GDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 29 ~~l~v~~l-s~~y~~~~~~~~~g~~~~l~~vsl~i~~---Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
++|+++|| +|+|+ +..++|+++||+|.+ |++++|+|++||||||+.++|++.
T Consensus 16 ~~l~~~~~~~~~~~--------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 16 ALLETGSLLHSPFD--------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp ------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEcceeeEEec--------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999 99993 246899999999999 999999999999999999999874
No 163
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.87 E-value=1e-10 Score=109.41 Aligned_cols=44 Identities=16% Similarity=0.336 Sum_probs=26.9
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEE---cCeec
Q 018938 60 LTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKV---LGRSA 103 (348)
Q Consensus 60 l~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i---~G~~~ 103 (348)
+++.+|++++|+||||||||||+|+|+|+..|..|.|.+ .|+..
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~t 214 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHT 214 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCccc
Confidence 677899999999999999999999999999999999988 66543
No 164
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.81 E-value=1.8e-12 Score=119.47 Aligned_cols=58 Identities=21% Similarity=0.409 Sum_probs=47.0
Q ss_pred EEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938 32 EINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS 102 (348)
Q Consensus 32 ~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~ 102 (348)
+++++.+.|. ...++++++|++++| ++|+||||||||||+++|++.. ..|.+.+++.+
T Consensus 51 ~l~~l~~~~~---------~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~--~~~~i~~~~~~ 108 (278)
T 1iy2_A 51 ELKEIVEFLK---------NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA--RVPFITASGSD 108 (278)
T ss_dssp HHHHHHHHHH---------CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT--TCCEEEEEHHH
T ss_pred HHHHHHHHHH---------CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc--CCCEEEecHHH
Confidence 3456666663 346889999999999 8999999999999999999975 37788887754
No 165
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.79 E-value=3.5e-09 Score=104.77 Aligned_cols=117 Identities=21% Similarity=0.253 Sum_probs=77.6
Q ss_pred ceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCCC
Q 018938 53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFE 132 (348)
Q Consensus 53 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (348)
..++++++.+++| +.|+||+|+|||||+++|++.... --+.+++
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~--~f~~is~-------------------------------- 82 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV--PFFHISG-------------------------------- 82 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC--CEEEEEG--------------------------------
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC--CeeeCCH--------------------------------
Confidence 4677778888888 789999999999999999983200 0000000
Q ss_pred ccccccchHHHHHhccCCCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEeecc----------CC
Q 018938 133 VPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEI----------TV 202 (348)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlLDEP----------ts 202 (348)
.++. .. ..+ +|++++|..+++|....|.+|++||+ ++
T Consensus 83 ---------~~~~---~~-------------------~~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~ 129 (476)
T 2ce7_A 83 ---------SDFV---EL-------------------FVG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG 129 (476)
T ss_dssp ---------GGTT---TC-------------------CTT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC------
T ss_pred ---------HHHH---HH-------------------Hhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccC
Confidence 0000 00 000 26788899999999999999999999 34
Q ss_pred CCCHHHHHHHHHHHHHHH---HhcCcEEEEEecChhhhh
Q 018938 203 DLDVLARADLLRFLRKEC---EERGATIIYATHIFDGLE 238 (348)
Q Consensus 203 gLD~~~~~~l~~~l~~l~---~~~g~tviivtHd~~~~~ 238 (348)
|.|......+.+++..+- ...+..||.+||+.+.+.
T Consensus 130 g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 130 GGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp ---CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 677777666777776652 234788999999987653
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.76 E-value=6.9e-10 Score=96.46 Aligned_cols=37 Identities=11% Similarity=0.141 Sum_probs=32.7
Q ss_pred HHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHH
Q 018938 182 VQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKEC 220 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~ 220 (348)
...|++|+.+|+++++| ||++|..+..++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887654
No 167
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.75 E-value=1.8e-09 Score=110.15 Aligned_cols=162 Identities=15% Similarity=0.147 Sum_probs=91.3
Q ss_pred CCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCC-ceEEEcCeeccccccccccCcccccchhhhh----
Q 018938 50 GSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEP-EMVKVLGRSAFHDTALTSSGDLSYLGGEWRR---- 124 (348)
Q Consensus 50 g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~-G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~---- 124 (348)
|...+++++++.+.+|+.++|+||||+|||||+++|++++.+.. |.+.+.+....... ..+.++......
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~-----p~i~~~p~g~~~~~~e 119 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM-----PRIKTVPACQGRRIVE 119 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS-----CEEEEEETTHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC-----CcEEEEecchHHHHHH
Confidence 35678999999999999999999999999999999999988776 56666654321100 011111100000
Q ss_pred -------------hhhhcCCCccccccchHHHHHh-ccC--CCCHHHHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHH
Q 018938 125 -------------EVAFAGFEVPIQMDVSAEKMIF-GVA--GIDPQRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGL 188 (348)
Q Consensus 125 -------------~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL 188 (348)
...+.........++...+... ... .........++..+... ......+|+|++|++..++..
T Consensus 120 ~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~-~~~~g~~~~g~~~~i~~g~~~ 198 (604)
T 3k1j_A 120 KYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD-PFQSGGLGTPAHERVEPGMIH 198 (604)
T ss_dssp HHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC-CC----CCCCGGGGEECCHHH
T ss_pred HHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec-hhhcCCccccccccccCceee
Confidence 0000000000000000000000 000 00000111222211111 122357999999999999999
Q ss_pred ccCCcEEEeeccCCCCCHHHHHHHHHHHHH
Q 018938 189 LKPFKVLLLDEITVDLDVLARADLLRFLRK 218 (348)
Q Consensus 189 ~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~ 218 (348)
..++.+|+|||... |++..+..+++.|.+
T Consensus 199 ~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 199 RAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999988 899988888888864
No 168
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.75 E-value=2.6e-09 Score=99.60 Aligned_cols=45 Identities=22% Similarity=0.286 Sum_probs=32.0
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEE---cCeecc
Q 018938 60 LTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKV---LGRSAF 104 (348)
Q Consensus 60 l~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i---~G~~~~ 104 (348)
|++.+|++++|+||||||||||+|+|+|+..|+.|+|.+ +|..+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t 211 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTT 211 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCce
Confidence 556789999999999999999999999999999999998 786543
No 169
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.71 E-value=7.1e-09 Score=88.78 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=34.7
Q ss_pred eeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCce
Q 018938 56 NDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEM 95 (348)
Q Consensus 56 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~ 95 (348)
++++|++.+| +++|+||||||||||+++|.+++.+..|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 7889999999 99999999999999999999987666553
No 170
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.69 E-value=9.9e-09 Score=107.45 Aligned_cols=73 Identities=19% Similarity=0.160 Sum_probs=58.1
Q ss_pred cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCC-CCCHHHHHHHHHHHHHHHHhcCcEEEEE-ecChhhhhhhCCE
Q 018938 170 RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITV-DLDVLARADLLRFLRKECEERGATIIYA-THIFDGLENWPSH 243 (348)
Q Consensus 170 ~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPts-gLD~~~~~~l~~~l~~l~~~~g~tviiv-tHd~~~~~~~~d~ 243 (348)
.+.-+|.|+.+|..++++++.++++||+|||.. +||......++..+.... ....+|+++ ||+.+.+..+++.
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCHHHHHHTTS
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHHHHHHHhcC
Confidence 456689999999999999999999999999996 999877666666555443 235677774 9999888877764
No 171
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.67 E-value=1e-09 Score=95.86 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=43.7
Q ss_pred eceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceE--EEcCe
Q 018938 34 NALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMV--KVLGR 101 (348)
Q Consensus 34 ~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i--~i~G~ 101 (348)
+|+++.+ +...+.+..++..++|++++|+||||||||||+++|++.+. .+|.+ .++|.
T Consensus 3 ~~~~~~~---------~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d 62 (200)
T 3uie_A 3 TNIKWHE---------CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGD 62 (200)
T ss_dssp ----------------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHH
T ss_pred CCCcccc---------cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCc
Confidence 4666666 34667888999999999999999999999999999999875 67776 66664
No 172
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.65 E-value=1.3e-07 Score=89.81 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=39.6
Q ss_pred HHHHHHHHHc----cCCcEEEeeccCCCCCHH------------HHHHHHHHHHHHHHhcCcEEEEEecChh
Q 018938 180 RRVQICMGLL----KPFKVLLLDEITVDLDVL------------ARADLLRFLRKECEERGATIIYATHIFD 235 (348)
Q Consensus 180 QRv~lAraL~----~~P~lLlLDEPtsgLD~~------------~~~~l~~~l~~l~~~~g~tviivtHd~~ 235 (348)
+.+..++.++ .+++++|+|+.++-.... ...+++..|+.++++.+.+||+++|...
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 4444455555 679999999999876442 1345666777788888999999999654
No 173
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.63 E-value=8e-09 Score=89.17 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=25.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCC
Q 018938 65 GDRCLLVGSNGAGKTTILKIIGGKHMVE 92 (348)
Q Consensus 65 Ge~~~liG~NGsGKSTLlk~i~Gl~~~~ 92 (348)
|++++|+||||||||||+++|+|++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 6789999999999999999999987643
No 174
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.62 E-value=1.7e-07 Score=88.17 Aligned_cols=57 Identities=16% Similarity=0.210 Sum_probs=40.8
Q ss_pred HHHHHHHHHHc---cCCcEEEeeccCCCCCH--------HH----HHHHHHHHHHHHHhcCcEEEEEecChh
Q 018938 179 RRRVQICMGLL---KPFKVLLLDEITVDLDV--------LA----RADLLRFLRKECEERGATIIYATHIFD 235 (348)
Q Consensus 179 rQRv~lAraL~---~~P~lLlLDEPtsgLD~--------~~----~~~l~~~l~~l~~~~g~tviivtHd~~ 235 (348)
.+.+..++.++ .+|+++|+|+.++-... .. ..+++..|+.++++.+.+||+++|-..
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMA 259 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC--
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceee
Confidence 35566777777 67999999999876532 11 345666777777888999999998654
No 175
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.61 E-value=4.7e-08 Score=92.45 Aligned_cols=129 Identities=18% Similarity=0.267 Sum_probs=83.3
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF 131 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (348)
.+.|+.+.--+.+|+++.|.|++|+|||||+.-++.......+.|.+ ...
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~------------------------------fSl 82 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAV------------------------------FSL 82 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEE------------------------------EES
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE------------------------------EeC
Confidence 45677777779999999999999999999998887532111111111 000
Q ss_pred CccccccchHHHHHhccCCCCHHHHHHHHH-HcCCCcCc-cCCCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHH
Q 018938 132 EVPIQMDVSAEKMIFGVAGIDPQRRAELIK-VLDIDLSW-RMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLAR 209 (348)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~l~~~~-~~~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~ 209 (348)
.++..++. ..++. ..++...+ +-..||.++++|+..|...+.+++++|.|+|...++
T Consensus 83 ------Ems~~ql~-----------~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~---- 141 (338)
T 4a1f_A 83 ------EMSAEQLA-----------LRALSDLTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE---- 141 (338)
T ss_dssp ------SSCHHHHH-----------HHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH----
T ss_pred ------CCCHHHHH-----------HHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH----
Confidence 01111111 11111 11222111 124799999999999999999999999999875533
Q ss_pred HHHHHHHHHHHHhc-CcEEEEEec
Q 018938 210 ADLLRFLRKECEER-GATIIYATH 232 (348)
Q Consensus 210 ~~l~~~l~~l~~~~-g~tviivtH 232 (348)
.|...++++.++. |..+|+|-|
T Consensus 142 -~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 -QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred -HHHHHHHHHHHhcCCCCEEEEec
Confidence 6667777777676 788888865
No 176
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.56 E-value=2.4e-08 Score=86.92 Aligned_cols=35 Identities=26% Similarity=0.251 Sum_probs=28.8
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc
Q 018938 60 LTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE 94 (348)
Q Consensus 60 l~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G 94 (348)
++|++|++++|+|||||||||++++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999998755443
No 177
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.56 E-value=1.3e-07 Score=90.58 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=44.9
Q ss_pred HHHHHHcCCCc------CccCCCCCHHHHHHHHHH----HHH-ccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHh
Q 018938 157 AELIKVLDIDL------SWRMHKVSDGQRRRVQIC----MGL-LKPFKVLLLDEITVDLDVLARADLLRFLRKECEE 222 (348)
Q Consensus 157 ~~~l~~l~l~~------~~~~~~LSgGqrQRv~lA----raL-~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~ 222 (348)
.++++.+++.. ..++..+|+|++|++.++ +++ ..+|++ +|+|++|..+...+++.|.++...
T Consensus 282 ~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 282 FEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp HHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence 45566655421 234667898899988877 666 445554 899999999999999999887644
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.53 E-value=1.4e-07 Score=90.01 Aligned_cols=60 Identities=10% Similarity=0.079 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Q 018938 172 HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATH 232 (348)
Q Consensus 172 ~~LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtH 232 (348)
.+.++.++|+..+++..+.+|+++||.-..+..|... ...+.+++.+......+|+++|.
T Consensus 153 ~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 153 GQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp TCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred CCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 3467889999999999999999888885444555443 34455666654332357777776
No 179
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.53 E-value=2.6e-08 Score=86.89 Aligned_cols=45 Identities=20% Similarity=0.240 Sum_probs=30.9
Q ss_pred eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938 54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS 102 (348)
Q Consensus 54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~ 102 (348)
+..+..++.++|++++|+||||||||||+++|+|.+ |.+.++|..
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~ 62 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADA 62 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGG
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccc
Confidence 444445677899999999999999999999999964 777777643
No 180
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.51 E-value=2.3e-07 Score=88.33 Aligned_cols=65 Identities=6% Similarity=0.122 Sum_probs=51.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHccCCcEEEee-ccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEe--cChhh
Q 018938 169 WRMHKVSDGQRRRVQICMGLLKPFKVLLLD-EITVDLDVLARADLLRFLRKECEERGATIIYAT--HIFDG 236 (348)
Q Consensus 169 ~~~~~LSgGqrQRv~lAraL~~~P~lLlLD-EPtsgLD~~~~~~l~~~l~~l~~~~g~tviivt--Hd~~~ 236 (348)
..+..+|+|++|++. +.+...++-++++| +|++++|......+++.+.+... +..+|+|. ||+..
T Consensus 227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVAD 294 (357)
T ss_dssp SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCC
T ss_pred cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCC
Confidence 346688999998876 66666788899999 99999999988887777766432 67888888 88753
No 181
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.49 E-value=3.7e-07 Score=86.82 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=39.0
Q ss_pred cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHh--cCcEEEEEecChhhhhhhC
Q 018938 190 KPFKVLLLDEITVDLDVLARADLLRFLRKECEE--RGATIIYATHIFDGLENWP 241 (348)
Q Consensus 190 ~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~--~g~tviivtHd~~~~~~~~ 241 (348)
.+|.+|++||+... |+.....+..++.++... .+.++|++||+.+....+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 56889999999876 988888888887665431 4789999999987555443
No 182
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.47 E-value=6.7e-08 Score=84.15 Aligned_cols=38 Identities=34% Similarity=0.309 Sum_probs=23.9
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
...+++||||++++|++++|+|++||||||+.+.|++.
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46799999999999999999999999999999999864
No 183
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.39 E-value=3.5e-08 Score=89.47 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=33.3
Q ss_pred eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHh---CCCcCCCceEE
Q 018938 54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG---GKHMVEPEMVK 97 (348)
Q Consensus 54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~---Gl~~~~~G~i~ 97 (348)
++++.+ ++|++++|+|||||||||++++|+ |+..++.|.+.
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 444443 789999999999999999999999 99888888765
No 184
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.39 E-value=6.8e-07 Score=87.17 Aligned_cols=39 Identities=23% Similarity=0.129 Sum_probs=32.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS 102 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~ 102 (348)
++.+++++|+|||||||++..|++.+.+..+.|.+.+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 578999999999999999999998877766677665443
No 185
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.34 E-value=1.6e-07 Score=80.48 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCc
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGKHM 90 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~~ 90 (348)
+|++++|+||||||||||+++|++.++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999999999764
No 186
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.34 E-value=1.3e-07 Score=84.38 Aligned_cols=40 Identities=23% Similarity=0.173 Sum_probs=34.4
Q ss_pred eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938 59 TLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS 102 (348)
Q Consensus 59 sl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~ 102 (348)
+.+.++|++++|+|+||||||||+++|+|+ .|.|.+.+.+
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 445578999999999999999999999996 6788887764
No 187
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.33 E-value=1.3e-08 Score=92.01 Aligned_cols=59 Identities=20% Similarity=0.392 Sum_probs=48.1
Q ss_pred EEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938 31 VEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS 102 (348)
Q Consensus 31 l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~ 102 (348)
.+++++++.|. ...+++++++++++| ++|+||||||||||+++|++.. ..|.+.++|..
T Consensus 26 ~~l~~l~~~~~---------~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~--~~~~i~~~~~~ 84 (254)
T 1ixz_A 26 EELKEIVEFLK---------NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA--RVPFITASGSD 84 (254)
T ss_dssp HHHHHHHHHHH---------CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT--TCCEEEEEHHH
T ss_pred HHHHHHHHHHH---------CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh--CCCEEEeeHHH
Confidence 34567777773 346899999999999 8999999999999999999975 36777777653
No 188
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.32 E-value=1.1e-08 Score=96.28 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=41.0
Q ss_pred CCceeeeeeeEEeCCC------EEEEECCCCCcHHHHHHHHhCCCc--CCCceEEEcC
Q 018938 51 STPLINDFTLTLNAGD------RCLLVGSNGAGKTTILKIIGGKHM--VEPEMVKVLG 100 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge------~~~liG~NGsGKSTLlk~i~Gl~~--~~~G~i~i~G 100 (348)
...+|.+++..+..+. ++||+||||||||||+++|++++. |+.|.+.+.+
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~ 129 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVIT 129 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEe
Confidence 4678888999998887 999999999999999999999875 4556654433
No 189
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.30 E-value=1.2e-07 Score=82.85 Aligned_cols=42 Identities=17% Similarity=0.026 Sum_probs=35.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938 61 TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS 102 (348)
Q Consensus 61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~ 102 (348)
..++|++++|+|+||||||||+++|++.+.+..|.+.+.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 357899999999999999999999999887777877765543
No 190
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.27 E-value=5.7e-07 Score=88.13 Aligned_cols=68 Identities=16% Similarity=0.289 Sum_probs=47.0
Q ss_pred cCCcEEEeeccCCCCCH-HHHHHHHHHHHHHHHhcCcEEEEEecCh-hhhhhhCCEEEE-EcCCEEeeecCh
Q 018938 190 KPFKVLLLDEITVDLDV-LARADLLRFLRKECEERGATIIYATHIF-DGLENWPSHIVY-VAHGKLQLAMPM 258 (348)
Q Consensus 190 ~~P~lLlLDEPtsgLD~-~~~~~l~~~l~~l~~~~g~tviivtHd~-~~~~~~~d~v~~-l~~G~i~~~g~~ 258 (348)
.+|++||+||+..-.+. ..+..++..+..+. +.|+.||++||+. ..+..+.+++.- +..|.++...++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-TTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 48999999999877664 67788889888875 4588999999983 333333344332 455666555444
No 191
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.25 E-value=1.5e-07 Score=88.40 Aligned_cols=49 Identities=24% Similarity=0.191 Sum_probs=42.9
Q ss_pred eeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeec
Q 018938 55 INDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSA 103 (348)
Q Consensus 55 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~ 103 (348)
+.+++|++++|++++|+|+||+||||++..|++.+.+..|+|.+.+.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3689999999999999999999999999999999888888888766543
No 192
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.24 E-value=3.9e-07 Score=86.33 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
..+..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999854
No 193
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.23 E-value=3.9e-07 Score=79.63 Aligned_cols=31 Identities=19% Similarity=0.449 Sum_probs=25.8
Q ss_pred eeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 59 TLTLNAGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 59 sl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
|+...+|++++|+||||||||||++.|++.+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3444589999999999999999999999865
No 194
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.23 E-value=5.1e-07 Score=79.23 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=26.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCcC
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGGKHMV 91 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~ 91 (348)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998654
No 195
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.21 E-value=4.5e-07 Score=93.40 Aligned_cols=38 Identities=29% Similarity=0.170 Sum_probs=29.1
Q ss_pred eeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcC--CCceE
Q 018938 59 TLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMV--EPEMV 96 (348)
Q Consensus 59 sl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~--~~G~i 96 (348)
|+++++|..++|+|+||||||||++.|++...+ ..|+|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 466788999999999999999999999965433 45555
No 196
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.21 E-value=1.8e-07 Score=89.88 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=37.7
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEE
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVK 97 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~ 97 (348)
..+|+++++.+++|++++|+||||||||||+++|+|. ..|.+.
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~ 198 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKAL 198 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEE
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEE
Confidence 3589999999999999999999999999999999984 356543
No 197
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.20 E-value=1.6e-06 Score=81.20 Aligned_cols=130 Identities=12% Similarity=0.158 Sum_probs=81.1
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeeccccccccccCcccccchhhhhhhhhcCC
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSSGDLSYLGGEWRREVAFAGF 131 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (348)
.+.|+.+.--+++|+++.|.|++|+|||||+..++.... ..| . .+.|...
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g------~-----------------------~vl~~sl 104 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS-DND------D-----------------------VVNLHSL 104 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH-TTT------C-----------------------EEEEEES
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC------C-----------------------eEEEEEC
Confidence 457888877799999999999999999999887764210 011 0 0011101
Q ss_pred CccccccchHHHHHhccCCCCHHHHHHHHHH-cCCCcCc-cCCC--CCHHHHHHHHHHHHHccCCcEEEeeccCCCCCHH
Q 018938 132 EVPIQMDVSAEKMIFGVAGIDPQRRAELIKV-LDIDLSW-RMHK--VSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVL 207 (348)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~l~~~~-~~~~--LSgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~~ 207 (348)
+ .+..++ ...++.. .+++..+ .-.. ||.++++|+..|...+.++++++.|+|... +
T Consensus 105 E------~s~~~l-----------~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--~- 164 (315)
T 3bh0_A 105 E------MGKKEN-----------IKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS--V- 164 (315)
T ss_dssp S------SCHHHH-----------HHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB--H-
T ss_pred C------CCHHHH-----------HHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC--H-
Confidence 1 111111 0111111 1222110 1122 899999999999999999999999998644 3
Q ss_pred HHHHHHHHHHHHHHhcCcE--EEEEecC
Q 018938 208 ARADLLRFLRKECEERGAT--IIYATHI 233 (348)
Q Consensus 208 ~~~~l~~~l~~l~~~~g~t--viivtHd 233 (348)
..+...++++.++.|.. +|+|-|-
T Consensus 165 --~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 165 --NYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp --HHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred --HHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 35666677776666777 8888764
No 198
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.20 E-value=2.4e-06 Score=79.46 Aligned_cols=65 Identities=14% Similarity=0.100 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHc--cCCcEEEeeccCCCCCHHH-HHHHHHHHHHHHHhcCc--EEEEEecChhhhhhhCCEEE
Q 018938 174 VSDGQRRRVQICMGLL--KPFKVLLLDEITVDLDVLA-RADLLRFLRKECEERGA--TIIYATHIFDGLENWPSHIV 245 (348)
Q Consensus 174 LSgGqrQRv~lAraL~--~~P~lLlLDEPtsgLD~~~-~~~l~~~l~~l~~~~g~--tviivtHd~~~~~~~~d~v~ 245 (348)
+|.|++ .+++.+. ..|.++++ |.+|... +..+.+.+.++.+..+. .+.+++|+-+.+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 898886 5566666 78999999 8999877 67788888888765554 67778888777777766654
No 199
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.20 E-value=1.5e-05 Score=75.95 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=45.2
Q ss_pred HHHHHHHHc--cCCcEEEeeccCCCCCHH------------HH----HHHHHHHHHHHHhcCcEEEEEecChh-------
Q 018938 181 RVQICMGLL--KPFKVLLLDEITVDLDVL------------AR----ADLLRFLRKECEERGATIIYATHIFD------- 235 (348)
Q Consensus 181 Rv~lAraL~--~~P~lLlLDEPtsgLD~~------------~~----~~l~~~l~~l~~~~g~tviivtHd~~------- 235 (348)
-..+++.++ .+++++|+|.+++-.... .+ .+++..|..++++.+++||+++|-..
T Consensus 129 ~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg 208 (356)
T 1u94_A 129 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 208 (356)
T ss_dssp HHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----------
T ss_pred HHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 345555553 689999999999876311 11 23333444446778999999999643
Q ss_pred ---------hhhhhCCEEEEEcCCE
Q 018938 236 ---------GLENWPSHIVYVAHGK 251 (348)
Q Consensus 236 ---------~~~~~~d~v~~l~~G~ 251 (348)
.+..+||-++.++..+
T Consensus 209 ~~~~~~gG~~l~~~advrl~l~r~~ 233 (356)
T 1u94_A 209 NPETTTGGNALKFYASVRLDIRRIG 233 (356)
T ss_dssp ----CTTCSHHHHHCSEEEEEEEEE
T ss_pred CCcccCCCcceeeeccEEEEEEEee
Confidence 2456788888776544
No 200
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.18 E-value=4.6e-07 Score=76.81 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=29.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCe
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGR 101 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~ 101 (348)
.+|++++|+|+|||||||++++|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCc
Confidence 468999999999999999999999853 66666553
No 201
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.14 E-value=3.9e-07 Score=91.61 Aligned_cols=41 Identities=24% Similarity=0.359 Sum_probs=36.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc-eEE-EcCe
Q 018938 61 TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE-MVK-VLGR 101 (348)
Q Consensus 61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G-~i~-i~G~ 101 (348)
.+++|++++|+|+||||||||+++|+|.+.|+.| .+. ++|.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 5789999999999999999999999999888886 674 6664
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.12 E-value=2.6e-08 Score=94.48 Aligned_cols=64 Identities=27% Similarity=0.235 Sum_probs=53.4
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS 102 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~ 102 (348)
+++.+++++.|+ ...+++++++.+.+|.+++|+|+||||||||++.|+|.+.+..+.+.+.+.+
T Consensus 30 ~ie~~~~~~~~~---------~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d 93 (341)
T 2p67_A 30 LVESRHPRHQAL---------STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 93 (341)
T ss_dssp HHHCCCHHHHHH---------HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HhhcCCchhhhH---------HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 467778777773 3578899999999999999999999999999999999877777777765544
No 203
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.07 E-value=7e-06 Score=75.47 Aligned_cols=62 Identities=11% Similarity=0.074 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHccCCcEEEeeccCCCCCH----------HHHHHHHHHHHHHHHh---cCcEEEEEecChhh
Q 018938 175 SDGQRRRVQICMGLLKPFKVLLLDEITVDLDV----------LARADLLRFLRKECEE---RGATIIYATHIFDG 236 (348)
Q Consensus 175 SgGqrQRv~lAraL~~~P~lLlLDEPtsgLD~----------~~~~~l~~~l~~l~~~---~g~tviivtHd~~~ 236 (348)
+++++.+..++.+...+|.+|++||+.+-++. .....++..+...... .+..||.+|++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~ 171 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQE 171 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhh
Confidence 35677788888888899999999999876653 2223344444332111 24567888887653
No 204
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.03 E-value=2.5e-06 Score=70.99 Aligned_cols=31 Identities=32% Similarity=0.582 Sum_probs=25.4
Q ss_pred eeeeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 56 NDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 56 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
.+.++++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3455666666 999999999999999999863
No 205
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.02 E-value=3.9e-06 Score=88.20 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=27.7
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 60 LTLNAGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 60 l~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
|.+++|+.+.|+||||||||||+++|+|.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 468899999999999999999999999964
No 206
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.02 E-value=1.6e-06 Score=73.03 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
.|++++|+|||||||||++++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999999864
No 207
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.01 E-value=1e-06 Score=84.26 Aligned_cols=52 Identities=25% Similarity=0.313 Sum_probs=46.2
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceee--------------eeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLIN--------------DFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~--------------~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
-+.++||++.|+. .+..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~--------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHAN--------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCC--------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCC--------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3778999999973 467888 899999999999999999999999999998753
No 208
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.99 E-value=6e-05 Score=73.75 Aligned_cols=172 Identities=12% Similarity=0.100 Sum_probs=93.7
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc-eEEE-cCeeccccccccccCcccccchhhhhhh-hh
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE-MVKV-LGRSAFHDTALTSSGDLSYLGGEWRREV-AF 128 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G-~i~i-~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 128 (348)
.+.|+.+.--+++|+++.|.|++|+|||||+..++.......| .+.+ ..+. . ...+..++ ..
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~--------~-------~~~l~~R~~~~ 251 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM--------P-------AAQLTLRMMCS 251 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS--------C-------HHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC--------C-------HHHHHHHHHHH
Confidence 4567777666999999999999999999999887753322222 2222 1110 0 00111110 00
Q ss_pred ---cCCCccccccchHHHHHhccCCCCHHHHHHHHHHcCC-Cc-CccCCCCCHHHHHHHHHHHHHc--cCCcEEEeeccC
Q 018938 129 ---AGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDI-DL-SWRMHKVSDGQRRRVQICMGLL--KPFKVLLLDEIT 201 (348)
Q Consensus 129 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l-~~-~~~~~~LSgGqrQRv~lAraL~--~~P~lLlLDEPt 201 (348)
.+........+... +..+....+..+.- .. -.....+|..+- .+.++.+. .+|+++|+|..+
T Consensus 252 ~~~i~~~~l~~g~l~~~---------~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l~ 320 (444)
T 2q6t_A 252 EARIDMNRVRLGQLTDR---------DFSRLVDVASRLSEAPIYIDDTPDLTLMEV--RARARRLVSQNQVGLIIIDYLQ 320 (444)
T ss_dssp HTTCCTTTCCGGGCCHH---------HHHHHHHHHHHHHTSCEEEECCTTCBHHHH--HHHHHHHHHHSCCCEEEEECGG
T ss_pred HcCCCHHHHhCCCCCHH---------HHHHHHHHHHHHhcCCEEEECCCCCCHHHH--HHHHHHHHHHcCCCEEEEcChh
Confidence 00000000001000 01122222222211 11 011245666654 44555554 589999999987
Q ss_pred CCCCH----------HHHHHHHHHHHHHHHhcCcEEEEEecChh-------------------hhhhhCCEEEEEcC
Q 018938 202 VDLDV----------LARADLLRFLRKECEERGATIIYATHIFD-------------------GLENWPSHIVYVAH 249 (348)
Q Consensus 202 sgLD~----------~~~~~l~~~l~~l~~~~g~tviivtHd~~-------------------~~~~~~d~v~~l~~ 249 (348)
.-... .....+...|+.++++.+++||+++|--. .+++.||.|++|+.
T Consensus 321 ~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 321 LMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp GCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred hcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 64432 12346778888888899999999999211 35677898888853
No 209
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.98 E-value=2.1e-05 Score=73.41 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=27.5
Q ss_pred ceeeeee-eEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 53 PLINDFT-LTLNAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 53 ~~l~~vs-l~i~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
+.|+.+- =-+++|+++.|.||+|+|||||+..++.
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444432 2578999999999999999999987764
No 210
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.93 E-value=1.3e-05 Score=74.31 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=26.0
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938 60 LTLNAGDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 60 l~i~~Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
+.+.++..+.|.||+|+|||||+++|++.
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 45678899999999999999999999985
No 211
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.88 E-value=4.3e-06 Score=72.80 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=28.2
Q ss_pred eeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 57 DFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 57 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
++--++++|.+++|+|++||||||++++|++.+
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 344467789999999999999999999999964
No 212
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.87 E-value=3.5e-06 Score=80.05 Aligned_cols=41 Identities=27% Similarity=0.306 Sum_probs=35.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeec
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSA 103 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~ 103 (348)
+++.+++|+|++|||||||++.|+|.+.+..|.|.+.+.++
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 35789999999999999999999998888888887766543
No 213
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.86 E-value=3.6e-06 Score=71.60 Aligned_cols=29 Identities=31% Similarity=0.352 Sum_probs=25.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCcC
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGGKHMV 91 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~ 91 (348)
.+|++++|+|++||||||++++|++.+.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 36899999999999999999999986544
No 214
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.83 E-value=2.1e-06 Score=75.63 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 65 GDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 65 Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
+.+++|+|||||||||+.++|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998754
No 215
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.80 E-value=6.9e-06 Score=73.24 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=28.9
Q ss_pred ceeeeeeeEEe---CCCEEEEECCCCCcHHHHHHHHhCCCcCCCceE
Q 018938 53 PLINDFTLTLN---AGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMV 96 (348)
Q Consensus 53 ~~l~~vsl~i~---~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i 96 (348)
.-|.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+
T Consensus 11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~ 56 (229)
T 4eaq_A 11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV 56 (229)
T ss_dssp ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence 34677777776 8999999999999999999999987654 3343
No 216
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.79 E-value=1.1e-05 Score=70.65 Aligned_cols=30 Identities=33% Similarity=0.592 Sum_probs=25.1
Q ss_pred eeeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 57 DFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 57 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
+.++.+.+| +.+|+|||||||||++.+|.-
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 456666665 999999999999999998863
No 217
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.75 E-value=0.00026 Score=62.80 Aligned_cols=44 Identities=18% Similarity=-0.001 Sum_probs=31.0
Q ss_pred ccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHh-cCcEEEEEec
Q 018938 189 LKPFKVLLLDEITVDLDVLARADLLRFLRKECEE-RGATIIYATH 232 (348)
Q Consensus 189 ~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~-~g~tviivtH 232 (348)
..+|+++|+..+.+.++......+..++..+... ...++|++||
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 3578999999999999887666665555443221 1248888898
No 218
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.75 E-value=0.00021 Score=69.98 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=29.0
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
.+.|+.+.--+.+|+++.|.|+.|+|||||+--++.
T Consensus 184 ~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 184 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp CHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 345666554689999999999999999999876654
No 219
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.73 E-value=3e-06 Score=85.24 Aligned_cols=48 Identities=25% Similarity=0.263 Sum_probs=40.6
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcC
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLG 100 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G 100 (348)
..++.++++++ +|++++|+||||+|||||+++|++.+.+..|.+.+.|
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 45778888888 8999999999999999999999998766666665555
No 220
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.69 E-value=0.00021 Score=68.17 Aligned_cols=27 Identities=26% Similarity=0.323 Sum_probs=23.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 61 TLNAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 61 ~i~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
-+++|+++.|.||.|+|||||...++-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 478999999999999999999876653
No 221
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.67 E-value=4e-05 Score=73.21 Aligned_cols=32 Identities=22% Similarity=0.443 Sum_probs=28.1
Q ss_pred eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHh
Q 018938 54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG 86 (348)
Q Consensus 54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~ 86 (348)
.+++..+++.+| +++|+|||||||||++.+|.
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 347788888886 99999999999999999885
No 222
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.67 E-value=6e-06 Score=82.44 Aligned_cols=35 Identities=34% Similarity=0.631 Sum_probs=31.3
Q ss_pred ceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938 53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 53 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
..+++++|++.+| +.+|+|+||||||||+.+|.++
T Consensus 49 ~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred cceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 3578899999999 9999999999999999999544
No 223
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.67 E-value=1.1e-05 Score=78.46 Aligned_cols=179 Identities=17% Similarity=0.076 Sum_probs=97.4
Q ss_pred EeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeecccccccccc
Q 018938 33 INALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSAFHDTALTSS 112 (348)
Q Consensus 33 v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~~~~~~~~~~ 112 (348)
.++|++.|++ .. ++++|+ +|++++++|+|||||||++..|++.+.+..+.|.+.+.+.+......
T Consensus 79 ~~~L~~~~~~---------~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~-- 143 (425)
T 2ffh_A 79 YEALKEALGG---------EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE-- 143 (425)
T ss_dssp HHHHHHHTTS---------SC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHH--
T ss_pred HHHHHHHhCC---------Cc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHH--
Confidence 3567777842 22 678888 89999999999999999999999998888788887665432211000
Q ss_pred CcccccchhhhhhhhhcCCCccccccchHHHHHhccCCCCHHHH-HHHHHHc---CCC---cCccC--CCCCHHHHHHHH
Q 018938 113 GDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRR-AELIKVL---DID---LSWRM--HKVSDGQRRRVQ 183 (348)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l---~l~---~~~~~--~~LSgGqrQRv~ 183 (348)
.+ ..+....++ +.+.. ....+...+ .+.++.+ +.+ .+..+ +.-+.-+.+...
T Consensus 144 -qL----~~~~~~~gv-----~v~~~---------~~~~~p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~ 204 (425)
T 2ffh_A 144 -QL----RLLGEKVGV-----PVLEV---------MDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELAR 204 (425)
T ss_dssp -HH----HHHHHHHTC-----CEEEC---------CTTCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHH
T ss_pred -HH----HHhcccCCc-----cEEec---------CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHH
Confidence 00 011111111 00000 000111111 2223222 111 12221 112345777788
Q ss_pred HHHHHccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh---------hhhhhCCEEEEEcCCEE
Q 018938 184 ICMGLLKPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD---------GLENWPSHIVYVAHGKL 252 (348)
Q Consensus 184 lAraL~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~---------~~~~~~d~v~~l~~G~i 252 (348)
+++++..++-+|++| ++++.|.. +.++.+....+.+-|+.|+--. ......-.|.++..|+-
T Consensus 205 i~~~~~pd~vlLVvD-a~tgq~av------~~a~~f~~~l~i~GVIlTKlD~~~~~g~alsi~~~~g~PI~flg~Ge~ 275 (425)
T 2ffh_A 205 LKEVLGPDEVLLVLD-AMTGQEAL------SVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEK 275 (425)
T ss_dssp HHHHHCCSEEEEEEE-GGGTTHHH------HHHHHHHHHTCCCEEEEESGGGCSSCHHHHHHHHHHCCCEEEEECSSS
T ss_pred hhhccCCceEEEEEe-ccchHHHH------HHHHHHHhcCCceEEEEeCcCCcccHHHHHHHHHHHCCCEEEEeCCCC
Confidence 888887777788888 56665543 2334444345667777776321 12233455667766654
No 224
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.65 E-value=2.1e-05 Score=67.35 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=25.8
Q ss_pred eeeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 57 DFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 57 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
++||+..+|.+++|+|++||||||+.+.|+-
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 5788889999999999999999999999986
No 225
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.65 E-value=6.8e-06 Score=71.97 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=33.0
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc--eEEEcC
Q 018938 60 LTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE--MVKVLG 100 (348)
Q Consensus 60 l~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G--~i~i~G 100 (348)
+.+++|.+++|+|++||||||+.+.|++.+.|..| .+.++|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 55678999999999999999999999987655555 454543
No 226
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.61 E-value=1.2e-05 Score=69.52 Aligned_cols=36 Identities=25% Similarity=0.479 Sum_probs=31.6
Q ss_pred CCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 51 STPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
-..+++++||..+++ .++|+|++|+|||||++.+.+
T Consensus 12 ~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 356899999998888 578999999999999999987
No 227
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.58 E-value=0.00011 Score=63.36 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 018938 66 DRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~Gl 88 (348)
..+.|.||+|+|||||++.|+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 68899999999999999999874
No 228
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.58 E-value=1.4e-05 Score=79.37 Aligned_cols=48 Identities=23% Similarity=0.461 Sum_probs=40.5
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCeec
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRSA 103 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~~ 103 (348)
..+++++++.+++| +.|+||||+|||||+++|+|.. ..+.+.++|..+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~--~~~~i~i~g~~~ 100 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA--RVPFITASGSDF 100 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHT--TCCEEEEEGGGG
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHh--CCCEEEEehhHH
Confidence 45788999999999 8999999999999999999965 367777877543
No 229
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.57 E-value=0.00012 Score=68.09 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=30.6
Q ss_pred cCCcEEEeeccCC-CCCHHHHHHHHHHHHHHHHhcCcEEEEEec
Q 018938 190 KPFKVLLLDEITV-DLDVLARADLLRFLRKECEERGATIIYATH 232 (348)
Q Consensus 190 ~~P~lLlLDEPts-gLD~~~~~~l~~~l~~l~~~~g~tviivtH 232 (348)
.+|++|++||+-. .-+...+..++.++..+.. .+..+|++|+
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~ 139 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASD 139 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEES
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 4699999999865 2344778888888887754 4666666665
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.56 E-value=1e-05 Score=75.17 Aligned_cols=58 Identities=21% Similarity=0.155 Sum_probs=45.0
Q ss_pred EeceEEEecCCCCCCCCCCCceeee-eeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCee
Q 018938 33 INALKFTYPGIDGHPPPGSTPLIND-FTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGRS 102 (348)
Q Consensus 33 v~~ls~~y~~~~~~~~~g~~~~l~~-vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~~ 102 (348)
.++|++.|++ .. ++ ++|+.+ |++++++|+||+||||++..|++.+.+..+.+.+.+.+
T Consensus 77 ~~~l~~~~~~---------~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 77 YDELSNLFGG---------DK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp HHHHHHHTTC---------SC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHhcc---------cc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4566677742 11 56 888876 99999999999999999999999887777777765543
No 231
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.56 E-value=5.9e-06 Score=78.82 Aligned_cols=50 Identities=22% Similarity=0.333 Sum_probs=36.4
Q ss_pred eEEEeceEEEecCCCCCCCCCCCceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCc
Q 018938 30 TVEINALKFTYPGIDGHPPPGSTPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPE 94 (348)
Q Consensus 30 ~l~v~~ls~~y~~~~~~~~~g~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G 94 (348)
.+.+.||++.|+ .+.++++++|.| +|+|+||+|||||++.|.|...+..+
T Consensus 17 ~v~~~~l~~~~~---------~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 17 YVGFANLPNQVH---------RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp ----CCHHHHHH---------THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----
T ss_pred eEEeccchHHhC---------CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 588899998884 456889999887 99999999999999999886544433
No 232
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.56 E-value=3.1e-05 Score=67.28 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=25.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 61 TLNAGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
...+|.+++|+||+|||||||.+.|+..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999999998754
No 233
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.55 E-value=2.7e-05 Score=67.35 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 018938 67 RCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~G 87 (348)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 234
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.53 E-value=0.00042 Score=64.62 Aligned_cols=59 Identities=10% Similarity=0.150 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHH--c--cCCcEEEeeccCCCCC-H--------------HHHHHHHHHH---HHHHHhcCcEEEEEecCh
Q 018938 177 GQRRRVQICMGL--L--KPFKVLLLDEITVDLD-V--------------LARADLLRFL---RKECEERGATIIYATHIF 234 (348)
Q Consensus 177 GqrQRv~lAraL--~--~~P~lLlLDEPtsgLD-~--------------~~~~~l~~~l---~~l~~~~g~tviivtHd~ 234 (348)
++++.+.++.++ + .+|++++.|=-++-.- . ...+.+-+.| ..++++.+.+||++-|-.
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~ 172 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTY 172 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCee
Confidence 455556666665 3 4799999997655431 0 1222333444 345678899999999986
Q ss_pred h
Q 018938 235 D 235 (348)
Q Consensus 235 ~ 235 (348)
.
T Consensus 173 k 173 (333)
T 3io5_A 173 E 173 (333)
T ss_dssp -
T ss_pred e
Confidence 5
No 235
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.51 E-value=2.2e-05 Score=67.04 Aligned_cols=36 Identities=31% Similarity=0.291 Sum_probs=28.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceE
Q 018938 61 TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMV 96 (348)
Q Consensus 61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i 96 (348)
...+|.+++|+|++||||||+.+.|+..+.+..+.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 335789999999999999999999998765444443
No 236
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.50 E-value=7.8e-05 Score=72.76 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=28.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCc------------CCCceEEEcCee
Q 018938 67 RCLLVGSNGAGKTTILKIIGGKHM------------VEPEMVKVLGRS 102 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl~~------------~~~G~i~i~G~~ 102 (348)
.++|+|+||||||||++.|+|... +..|.+.++|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 799999999999999999999753 445667777653
No 237
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.48 E-value=5.2e-05 Score=64.86 Aligned_cols=34 Identities=29% Similarity=0.534 Sum_probs=20.6
Q ss_pred ceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 53 PLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 53 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
.+++++++..++. .++|+|++|+|||||++.+++
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4789999998887 779999999999999999987
No 238
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.46 E-value=5.1e-05 Score=63.88 Aligned_cols=26 Identities=27% Similarity=0.655 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
+|..++|+|++|+|||||++.++|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999999853
No 239
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.43 E-value=0.00067 Score=67.22 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=46.7
Q ss_pred HHHHHHHHHc--cCCcEEEeeccCCCCC--------HHHHHHHHHHHHHHHHhcCcEEEEEecChh--------------
Q 018938 180 RRVQICMGLL--KPFKVLLLDEITVDLD--------VLARADLLRFLRKECEERGATIIYATHIFD-------------- 235 (348)
Q Consensus 180 QRv~lAraL~--~~P~lLlLDEPtsgLD--------~~~~~~l~~~l~~l~~~~g~tviivtHd~~-------------- 235 (348)
+-+..++.++ .+|+++|+| +...+. ......+...|+.++++.+++||+++|--.
T Consensus 341 ~i~~~i~~~~~~~~~~lvVID-~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~ 419 (503)
T 1q57_A 341 RLLAKLAYMRSGLGCDVIILD-HISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVS 419 (503)
T ss_dssp HHHHHHHHHHHTTCCSEEEEE-CTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCC
T ss_pred HHHHHHHHHHHhcCCCEEEEc-cchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCC
Confidence 3344445443 579999999 444432 123346777888888899999999999542
Q ss_pred --------hhhhhCCEEEEEcC
Q 018938 236 --------GLENWPSHIVYVAH 249 (348)
Q Consensus 236 --------~~~~~~d~v~~l~~ 249 (348)
.+++.||-|+.|+.
T Consensus 420 l~dlr~s~~ie~~aD~vi~l~r 441 (503)
T 1q57_A 420 ITDLRGSGALRQLSDTIIALER 441 (503)
T ss_dssp SSSCSSSSHHHHHCSEEEEEEE
T ss_pred hhhhccchHhhecCcEEEEEEe
Confidence 24466888888853
No 240
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.40 E-value=0.00022 Score=64.78 Aligned_cols=55 Identities=24% Similarity=0.198 Sum_probs=35.9
Q ss_pred HHHHHccCCcEEEeeccCCC----------CCHHHHHHHHHHHHHHH---HhcCcEEEEEecChhhhh
Q 018938 184 ICMGLLKPFKVLLLDEITVD----------LDVLARADLLRFLRKEC---EERGATIIYATHIFDGLE 238 (348)
Q Consensus 184 lAraL~~~P~lLlLDEPtsg----------LD~~~~~~l~~~l~~l~---~~~g~tviivtHd~~~~~ 238 (348)
+..+....|.+|++||--.- -+......+..++..+. ...+..||.+|+..+.+.
T Consensus 103 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~ 170 (285)
T 3h4m_A 103 FKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILD 170 (285)
T ss_dssp HHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBC
T ss_pred HHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcC
Confidence 33444567899999997432 25666777777777652 123567888888765543
No 241
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.39 E-value=0.00074 Score=75.50 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=25.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938 61 TLNAGDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
-+++|+++.|.||+|+|||||+..++..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 3899999999999999999999988764
No 242
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.36 E-value=8.2e-05 Score=71.60 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=30.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCC-----------CcCCCceEEEcC
Q 018938 61 TLNAGDRCLLVGSNGAGKTTILKIIGGK-----------HMVEPEMVKVLG 100 (348)
Q Consensus 61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl-----------~~~~~G~i~i~G 100 (348)
.+..|..++|+|+||+|||||++.|+|. ..|..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 4467888999999999999999999997 345556655544
No 243
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.34 E-value=0.00014 Score=60.47 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 244
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.34 E-value=2e-05 Score=74.68 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=33.4
Q ss_pred ceeeeeeeEEeCCCE--EEEECCCCCcHHHHHHHHhCCC
Q 018938 53 PLINDFTLTLNAGDR--CLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 53 ~~l~~vsl~i~~Ge~--~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 477888999999999 9999999999999999999853
No 245
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.32 E-value=0.00014 Score=61.47 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 246
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.31 E-value=2e-05 Score=74.17 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=38.0
Q ss_pred CCceeeeeeeEEeCCCE--EEEECCCCCcHHHHHHHHhCCCcCCCc
Q 018938 51 STPLINDFTLTLNAGDR--CLLVGSNGAGKTTILKIIGGKHMVEPE 94 (348)
Q Consensus 51 ~~~~l~~vsl~i~~Ge~--~~liG~NGsGKSTLlk~i~Gl~~~~~G 94 (348)
...+++.++..++.|++ +.|.||+|+||||+++++++.+.+..+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 45688999999999999 999999999999999999997654443
No 247
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.29 E-value=9.8e-05 Score=62.66 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999984
No 248
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.28 E-value=0.00085 Score=59.25 Aligned_cols=61 Identities=21% Similarity=0.072 Sum_probs=43.6
Q ss_pred HccCCcEEEeeccCC----CCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh----------hhhhhCCEEEEEc
Q 018938 188 LLKPFKVLLLDEITV----DLDVLARADLLRFLRKECEERGATIIYATHIFD----------GLENWPSHIVYVA 248 (348)
Q Consensus 188 L~~~P~lLlLDEPts----gLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~----------~~~~~~d~v~~l~ 248 (348)
-..+|+++++|--+. .-|......+...|+.++++.++++++++|-.. .++.+||-|+.|+
T Consensus 132 ~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 132 KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 346899999995431 114555667788888888899999999998532 2356788888775
No 249
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.26 E-value=0.00016 Score=68.09 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=22.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
..+..+.|.||.|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
No 250
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.26 E-value=0.00012 Score=63.21 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 018938 65 GDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 65 Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 251
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.25 E-value=0.00016 Score=61.24 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999964
No 252
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.25 E-value=0.00013 Score=64.86 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
.+|.+++|+|++||||||+.++|++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999999986
No 253
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.14 E-value=0.00022 Score=59.35 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 254
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.14 E-value=9.4e-05 Score=66.12 Aligned_cols=24 Identities=17% Similarity=0.291 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
..-+++|.||+||||||+.+.|+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999984
No 255
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.11 E-value=0.00017 Score=61.56 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=22.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCcC
Q 018938 66 DRCLLVGSNGAGKTTILKIIGGKHMV 91 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~Gl~~~ 91 (348)
.+++|+|++|||||||++.|++.+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 58999999999999999999986543
No 256
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.11 E-value=0.00013 Score=65.55 Aligned_cols=34 Identities=32% Similarity=0.537 Sum_probs=24.0
Q ss_pred eeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 54 LINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 54 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
.++++++.++.| +.|+||+|+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 345555555555 8899999999999999999853
No 257
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.11 E-value=0.00029 Score=59.27 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 018938 65 GDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 65 Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
|.++.|+|++||||||+.+.|+-.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999864
No 258
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.06 E-value=0.0046 Score=60.21 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCc
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGKHM 90 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~~ 90 (348)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999986544
No 259
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.04 E-value=0.00029 Score=67.51 Aligned_cols=48 Identities=19% Similarity=0.108 Sum_probs=39.7
Q ss_pred cCCcEEEeeccCCCCC---HHHHHHHHHHHHHHHHhcCcEEEEEecChhhhh
Q 018938 190 KPFKVLLLDEITVDLD---VLARADLLRFLRKECEERGATIIYATHIFDGLE 238 (348)
Q Consensus 190 ~~P~lLlLDEPtsgLD---~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~ 238 (348)
..|.++++||-=.-++ +.....+.+++++. +++|..++++||.+..+.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~-Rk~g~~~~~~tQ~~~d~~ 311 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRI-RKYNGSLIVISQNVIDFL 311 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHG-GGGTCEEEEEESCGGGGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHh-hhhCeEEEEEcCCHHHhh
Confidence 3689999999988884 66777788888775 567999999999998764
No 260
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.03 E-value=0.0002 Score=64.44 Aligned_cols=39 Identities=33% Similarity=0.363 Sum_probs=29.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcCe
Q 018938 61 TLNAGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLGR 101 (348)
Q Consensus 61 ~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G~ 101 (348)
....+.++.|+|++||||||+.+.|+..+. .+.+.+++.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D 66 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGD 66 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecH
Confidence 456778999999999999999999987542 344555553
No 261
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.02 E-value=0.00037 Score=59.06 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 018938 65 GDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 65 Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
|.+++|.|++||||||+.+.|+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999975
No 262
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.98 E-value=0.0064 Score=68.13 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=28.0
Q ss_pred CceeeeeeeE---EeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 52 TPLINDFTLT---LNAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 52 ~~~l~~vsl~---i~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
...|+.+ +. +++|.++.|.||+|+|||||.-.++.
T Consensus 368 i~~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 368 SLSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp CHHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cHHHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3456655 33 88999999999999999999877654
No 263
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.97 E-value=0.00039 Score=57.69 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 018938 67 RCLLVGSNGAGKTTILKII 85 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i 85 (348)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 264
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.96 E-value=0.00057 Score=60.58 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=38.5
Q ss_pred cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecCh----------hhhhhhCCEEEEEc
Q 018938 190 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF----------DGLENWPSHIVYVA 248 (348)
Q Consensus 190 ~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~----------~~~~~~~d~v~~l~ 248 (348)
.+|+++++||--. |+.. +.+.+..++. .|.+||++-|+. ..+..+||+|..|+
T Consensus 88 ~~~dvViIDEaQ~-l~~~----~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 88 DETKVIGIDEVQF-FDDR----ICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TTCCEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCCEEEEecCcc-CcHH----HHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 3589999999964 6653 4455566554 489999999943 34456899999875
No 265
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.94 E-value=0.0004 Score=60.63 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 018938 65 GDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 65 Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
+-+++|+|++||||||+.+.|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 266
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.94 E-value=0.00033 Score=59.52 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=22.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
..+.++.|+|++||||||+.+.|+-
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999974
No 267
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.90 E-value=0.00028 Score=59.61 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=22.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
..+.++.|+|++||||||+.+.|+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4577899999999999999999983
No 268
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.89 E-value=0.00049 Score=58.91 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
+++|+|++||||||+.+.|+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999874
No 269
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.88 E-value=0.00056 Score=58.73 Aligned_cols=26 Identities=27% Similarity=0.204 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
+|-+++|+|+.||||||+.+.|+-.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999998753
No 270
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.88 E-value=0.00043 Score=58.26 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
+++|+|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999863
No 271
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.87 E-value=0.0005 Score=59.23 Aligned_cols=20 Identities=35% Similarity=0.624 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 018938 68 CLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 68 ~~liG~NGsGKSTLlk~i~G 87 (348)
+.|+||||||||||++.|.-
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999998865
No 272
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.86 E-value=0.00061 Score=57.64 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
.+.++.|+|++||||||+.+.|+-
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999974
No 273
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.85 E-value=0.0021 Score=60.74 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=22.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.+...+.|.||.|+|||||++.|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999864
No 274
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.84 E-value=0.00056 Score=61.64 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
+++|+||||||||||.+.|++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999999863
No 275
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.83 E-value=0.01 Score=67.33 Aligned_cols=70 Identities=17% Similarity=0.224 Sum_probs=45.9
Q ss_pred HHHHHHHHc--cCCcEEEeeccCCCCC-HH------------HHHHHHHHHHHH---HHhcCcEEEEEecChhh------
Q 018938 181 RVQICMGLL--KPFKVLLLDEITVDLD-VL------------ARADLLRFLRKE---CEERGATIIYATHIFDG------ 236 (348)
Q Consensus 181 Rv~lAraL~--~~P~lLlLDEPtsgLD-~~------------~~~~l~~~l~~l---~~~~g~tviivtHd~~~------ 236 (348)
-+.+++.++ .+|+++++|.-++-.. .+ ..+.+.+.|+.+ +++.+++||+++|-...
T Consensus 449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g 528 (2050)
T 3cmu_A 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 528 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence 445566554 5899999998876552 11 123344555554 67889999999985432
Q ss_pred ----------hhhhCCEEEEEcCC
Q 018938 237 ----------LENWPSHIVYVAHG 250 (348)
Q Consensus 237 ----------~~~~~d~v~~l~~G 250 (348)
++.+||.++.|+..
T Consensus 529 ~p~~psGg~ale~~ADv~l~L~R~ 552 (2050)
T 3cmu_A 529 NPETTTGGNALKFYASVRLDIRRI 552 (2050)
T ss_dssp CCEECSSHHHHHHHEEEEEEEEEE
T ss_pred CCcCCCCcchhhhhCCEEEEEEec
Confidence 56678888887643
No 276
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.82 E-value=0.00062 Score=57.03 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 018938 66 DRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~G 87 (348)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999985
No 277
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.81 E-value=0.0031 Score=58.83 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=25.0
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 60 LTLNAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 60 l~i~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
--+++|.++.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688899999999999999999998874
No 278
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.78 E-value=0.0007 Score=58.51 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.1
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 62 LNAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 62 i~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
..+|-+++|+|+.||||||+.+.|+-
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999999974
No 279
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.77 E-value=0.00062 Score=61.74 Aligned_cols=48 Identities=17% Similarity=0.019 Sum_probs=40.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhhhhhCCEEEEE
Q 018938 200 ITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGLENWPSHIVYV 247 (348)
Q Consensus 200 PtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~v~~l 247 (348)
|||+++..+...+++.+.+.......+..+.+|..+.++..++++...
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~ 191 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISEL 191 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHHH
Confidence 999999999999999999887665666677889989898888876544
No 280
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.76 E-value=0.0027 Score=62.54 Aligned_cols=71 Identities=15% Similarity=0.273 Sum_probs=56.3
Q ss_pred CCCCCHHHHHHHHHHHHHc--c---------------CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecC
Q 018938 171 MHKVSDGQRRRVQICMGLL--K---------------PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI 233 (348)
Q Consensus 171 ~~~LSgGqrQRv~lAraL~--~---------------~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd 233 (348)
...+||||+|-..+|.+.+ . .-.+++|||. +-+|.+.....++++++ .|.-+|++|=+
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~----lglQliiatP~ 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCER----LDMQLLIAAPE 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHH----TTCEEEEEESS
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHH----cCCEEEEECcc
Confidence 4579999999765554432 2 2358999999 99999999999999875 48899999988
Q ss_pred hhhhhhhCCEEEEEc
Q 018938 234 FDGLENWPSHIVYVA 248 (348)
Q Consensus 234 ~~~~~~~~d~v~~l~ 248 (348)
.+..++|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 6777888888764
No 281
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.75 E-value=0.00033 Score=60.70 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCc
Q 018938 67 RCLLVGSNGAGKTTILKIIGGKHM 90 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl~~ 90 (348)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987543
No 282
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.74 E-value=0.00078 Score=58.15 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
.+|-+++|+|+.||||||+.+.|+-
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4678999999999999999999974
No 283
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.74 E-value=0.00069 Score=58.02 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 018938 66 DRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~G 87 (348)
.+++|+|++||||||+.+.|+.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 284
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.73 E-value=0.0008 Score=57.25 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
.++.+++|+|+.||||||+.+.|+-
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3577999999999999999999974
No 285
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.73 E-value=0.001 Score=63.19 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=28.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC-----------CcCCCceEEEcC
Q 018938 65 GDRCLLVGSNGAGKTTILKIIGGK-----------HMVEPEMVKVLG 100 (348)
Q Consensus 65 Ge~~~liG~NGsGKSTLlk~i~Gl-----------~~~~~G~i~i~G 100 (348)
|-.++|+|.+|+|||||++.|+|- +.|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 457899999999999999999982 345556666654
No 286
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.71 E-value=0.00079 Score=57.94 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
+|.+++|.|+.||||||+.+.|+-.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999763
No 287
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.71 E-value=0.00067 Score=62.34 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=26.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCcCCCceEEEcC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGKHMVEPEMVKVLG 100 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~~~~~G~i~i~G 100 (348)
.|.++.|+||+||||||+.+.|+..+ ..+.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~--~~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET--QGNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT--TTCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh--CCCeEEEec
Confidence 46789999999999999999997532 124455543
No 288
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.67 E-value=0.00086 Score=56.83 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 018938 65 GDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 65 Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
+.+++|+|++||||||+.+.|+-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999864
No 289
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.65 E-value=0.0033 Score=62.17 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=22.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938 62 LNAGDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 62 i~~Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
+.+..-+.|.||+|+|||+|.+.|+..
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 345566899999999999999999863
No 290
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.63 E-value=0.00093 Score=56.51 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
++.|.|+.||||||+.+.|+-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
No 291
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.62 E-value=0.00075 Score=56.85 Aligned_cols=24 Identities=21% Similarity=0.237 Sum_probs=17.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
++.++.|+|++||||||+.+.|+-
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999974
No 292
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.61 E-value=0.0011 Score=56.52 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
+++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 293
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.59 E-value=0.00038 Score=59.47 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 62 LNAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 62 i~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
+..+-+++|+|+.||||||+.+.|+-
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 44677999999999999999999975
No 294
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.59 E-value=0.0011 Score=56.93 Aligned_cols=22 Identities=14% Similarity=0.371 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
+++|.|++||||||+.+.|+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999873
No 295
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.58 E-value=0.00078 Score=59.67 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=22.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHh
Q 018938 61 TLNAGDRCLLVGSNGAGKTTILKIIG 86 (348)
Q Consensus 61 ~i~~Ge~~~liG~NGsGKSTLlk~i~ 86 (348)
.+..|+.++++||+||||||++.++.
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 45679999999999999999988765
No 296
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.56 E-value=0.0013 Score=55.79 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCc
Q 018938 66 DRCLLVGSNGAGKTTILKIIGGKHM 90 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~Gl~~ 90 (348)
.+++|+|++|||||||+..|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999987543
No 297
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.51 E-value=0.0015 Score=56.97 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
+|-+++|+|+.||||||+.+.|+-
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999975
No 298
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.50 E-value=0.003 Score=53.44 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 018938 67 RCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~G 87 (348)
.++|+|++|+|||||++.+++
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999976554
No 299
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.50 E-value=0.0014 Score=59.74 Aligned_cols=23 Identities=30% Similarity=0.679 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999953
No 300
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.48 E-value=0.0014 Score=57.51 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
.++.+++|+|+.||||||+.+.|+-
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999984
No 301
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.46 E-value=0.003 Score=54.46 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=38.4
Q ss_pred CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecCh----------hhhhhhCCEEEEEc
Q 018938 191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIF----------DGLENWPSHIVYVA 248 (348)
Q Consensus 191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~----------~~~~~~~d~v~~l~ 248 (348)
+.+++++||--- +|+. +++.++++... |+.||+..+|. ..+..+||.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999644 7764 35566666544 89999999876 44567899998775
No 302
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.45 E-value=0.0015 Score=56.69 Aligned_cols=21 Identities=38% Similarity=0.403 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 018938 67 RCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~G 87 (348)
+++|+|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999964
No 303
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.0013 Score=55.61 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 018938 66 DRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~Gl 88 (348)
=.++|+|+.|||||||++.+++.
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999985
No 304
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.42 E-value=0.0016 Score=55.09 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 018938 67 RCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~G 87 (348)
+++|+|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999975
No 305
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.42 E-value=0.0015 Score=55.06 Aligned_cols=22 Identities=50% Similarity=0.768 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|++|+|||||++.+++-
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999984
No 306
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.42 E-value=0.002 Score=55.41 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
.+-+++|+|+.||||||+.+.|+-
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
No 307
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.42 E-value=0.00021 Score=63.42 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=28.1
Q ss_pred HccCCcEEEeeccCCC-CCHHHHHHHHHHHHHHHHhcCcEEEEEec
Q 018938 188 LLKPFKVLLLDEITVD-LDVLARADLLRFLRKECEERGATIIYATH 232 (348)
Q Consensus 188 L~~~P~lLlLDEPtsg-LD~~~~~~l~~~l~~l~~~~g~tviivtH 232 (348)
+...|+++|+|||-.- .+.......++.+.... +.|..|+.++|
T Consensus 81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l-~sgidVitT~N 125 (228)
T 2r8r_A 81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELL-AAGIDVYTTVN 125 (228)
T ss_dssp HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHH-HTTCEEEEEEE
T ss_pred HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHH-cCCCCEEEEcc
Confidence 4468999999997632 34322233444444443 45889999988
No 308
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.41 E-value=0.0015 Score=53.46 Aligned_cols=22 Identities=41% Similarity=0.889 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.++|.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999999885
No 309
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.41 E-value=0.0014 Score=54.53 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 018938 66 DRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~G 87 (348)
.+++|+|+.||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 310
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.39 E-value=0.0018 Score=53.62 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 018938 67 RCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~G 87 (348)
+++|+|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 311
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.38 E-value=0.002 Score=53.20 Aligned_cols=22 Identities=41% Similarity=0.830 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.|-
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4789999999999999999984
No 312
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.36 E-value=0.0018 Score=56.22 Aligned_cols=21 Identities=38% Similarity=0.357 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 018938 67 RCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~G 87 (348)
.++|+|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999964
No 313
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.36 E-value=0.0021 Score=52.77 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 314
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.34 E-value=0.0018 Score=54.73 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 018938 66 DRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~G 87 (348)
.+++|+|+.||||||+.+.|+-
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999974
No 315
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.33 E-value=0.0021 Score=52.76 Aligned_cols=22 Identities=41% Similarity=0.804 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999874
No 316
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.33 E-value=0.0016 Score=56.93 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
.+.++.|+|++||||||+.+.|+-
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999974
No 317
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.33 E-value=0.002 Score=57.66 Aligned_cols=59 Identities=15% Similarity=-0.067 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHH---ccCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHh--cCcEEEEEecChhh
Q 018938 177 GQRRRVQICMGL---LKPFKVLLLDEITVDLDVLARADLLRFLRKECEE--RGATIIYATHIFDG 236 (348)
Q Consensus 177 GqrQRv~lAraL---~~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~--~g~tviivtHd~~~ 236 (348)
|++.+-.+.+++ ..+++++|+--+.+.+... ...+++.+.+.... .+.++|+++|-.+.
T Consensus 88 ~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 88 TDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 344444555555 3888888877666666543 34555666654311 26799999997654
No 318
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.32 E-value=0.0017 Score=54.85 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 018938 66 DRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~G 87 (348)
-+++|+|+.||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999974
No 319
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.32 E-value=0.0021 Score=53.34 Aligned_cols=22 Identities=27% Similarity=0.656 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 320
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.32 E-value=0.0023 Score=53.26 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 018938 66 DRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~G 87 (348)
++++|+|+.||||||+.+.|+-
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999974
No 321
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.30 E-value=0.0018 Score=53.08 Aligned_cols=22 Identities=18% Similarity=0.449 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 322
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.29 E-value=0.0021 Score=55.15 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 018938 65 GDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 65 Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
..+++|+|+.||||||+.+.|+-
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999974
No 323
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.29 E-value=0.0021 Score=55.42 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 018938 66 DRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~G 87 (348)
-+++|+|+.||||||+.+.|+-
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999974
No 324
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.29 E-value=0.002 Score=58.05 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
++.++.|+|++||||||+.+.|+-
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
No 325
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.29 E-value=0.026 Score=64.12 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=29.1
Q ss_pred eeeeeee--EEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 54 LINDFTL--TLNAGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 54 ~l~~vsl--~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
-|+.+-= -+++|+++.|.|++|+|||||+..++...
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3555442 58899999999999999999999887643
No 326
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.28 E-value=0.0028 Score=52.54 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999874
No 327
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.27 E-value=0.0019 Score=52.52 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 328
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.26 E-value=0.0013 Score=60.19 Aligned_cols=43 Identities=21% Similarity=0.341 Sum_probs=31.6
Q ss_pred CceeeeeeeEEeCC-----------CEEEEECCCCCcHHHHHHHHhCCCcCCCc
Q 018938 52 TPLINDFTLTLNAG-----------DRCLLVGSNGAGKTTILKIIGGKHMVEPE 94 (348)
Q Consensus 52 ~~~l~~vsl~i~~G-----------e~~~liG~NGsGKSTLlk~i~Gl~~~~~G 94 (348)
..+++.+...+..+ ..+.|+||+|+||||++++|++.+....+
T Consensus 23 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~ 76 (311)
T 4fcw_A 23 DEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEE 76 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCc
Confidence 34555555555543 58999999999999999999986544433
No 329
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.26 E-value=0.002 Score=54.42 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 018938 66 DRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~Gl 88 (348)
=.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999984
No 330
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.24 E-value=0.0018 Score=52.65 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 331
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.24 E-value=0.0023 Score=57.32 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 018938 66 DRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~G 87 (348)
-+++|.|+.||||||+.+.|+-
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999975
No 332
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.24 E-value=0.0021 Score=54.09 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.|-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999985
No 333
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.22 E-value=0.0016 Score=54.45 Aligned_cols=22 Identities=50% Similarity=0.599 Sum_probs=20.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 018938 66 DRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~G 87 (348)
=.++|+|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999985
No 334
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.22 E-value=0.0021 Score=52.35 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999998753
No 335
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.20 E-value=0.0022 Score=52.34 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 336
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.19 E-value=0.0022 Score=52.58 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999875
No 337
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.19 E-value=0.0022 Score=52.64 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 338
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.19 E-value=0.0029 Score=55.14 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.+..+.|.||+|+|||||++.++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999864
No 339
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.18 E-value=0.0023 Score=53.15 Aligned_cols=22 Identities=23% Similarity=0.596 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|||||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998874
No 340
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.16 E-value=0.0024 Score=53.53 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999985
No 341
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.16 E-value=0.0027 Score=55.72 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 018938 67 RCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~G 87 (348)
+++|+|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999974
No 342
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.15 E-value=0.0023 Score=52.32 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 343
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.14 E-value=0.0024 Score=52.16 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999863
No 344
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.0077 Score=58.44 Aligned_cols=27 Identities=30% Similarity=0.561 Sum_probs=22.4
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938 62 LNAGDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 62 i~~Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
+++-.=+.|.||.|+|||+|.++|++.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344445889999999999999999974
No 345
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.13 E-value=0.0024 Score=52.84 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 346
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.13 E-value=0.0028 Score=58.55 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
+++|+|.+|+|||||++.++|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 347
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.0066 Score=58.34 Aligned_cols=55 Identities=24% Similarity=0.278 Sum_probs=34.7
Q ss_pred HHHHHccCCcEEEeeccCCCC----------CHHHHHHHHHHHHHHH---HhcCcEEEEEecChhhhh
Q 018938 184 ICMGLLKPFKVLLLDEITVDL----------DVLARADLLRFLRKEC---EERGATIIYATHIFDGLE 238 (348)
Q Consensus 184 lAraL~~~P~lLlLDEPtsgL----------D~~~~~~l~~~l~~l~---~~~g~tviivtHd~~~~~ 238 (348)
+..|-...|.||++||--+-. |......+.++|.++- ...+..||.+|..++.+.
T Consensus 234 F~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LD 301 (405)
T 4b4t_J 234 FVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILD 301 (405)
T ss_dssp HHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSC
T ss_pred HHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCC
Confidence 334445679999999964322 3445555666666552 233567889998877653
No 348
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.12 E-value=0.0022 Score=52.56 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
No 349
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.12 E-value=0.0015 Score=60.17 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=18.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
++-+++|.|++||||||+.+.|+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999976
No 350
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.011 Score=57.60 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=36.5
Q ss_pred HHHHHHHccCCcEEEeeccCC----------CCCHHHHHHHHHHHHHHH---HhcCcEEEEEecChhhhh
Q 018938 182 VQICMGLLKPFKVLLLDEITV----------DLDVLARADLLRFLRKEC---EERGATIIYATHIFDGLE 238 (348)
Q Consensus 182 v~lAraL~~~P~lLlLDEPts----------gLD~~~~~~l~~~l~~l~---~~~g~tviivtHd~~~~~ 238 (348)
-.+..|-...|-||++||--+ +-|......+..+|..+- ...+.-||.+|..++.+.
T Consensus 265 ~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LD 334 (437)
T 4b4t_L 265 EMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLD 334 (437)
T ss_dssp HHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSC
T ss_pred HHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhC
Confidence 334555667899999999743 234445555566666552 223567899999887654
No 351
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.10 E-value=0.0029 Score=56.48 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
++-+++|+||.||||||+.+.|+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999974
No 352
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.09 E-value=0.0027 Score=58.03 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=19.8
Q ss_pred CEEEEECCCCCcHHHHHHHHh
Q 018938 66 DRCLLVGSNGAGKTTILKIIG 86 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~ 86 (348)
-+++|+|+.||||||+.+.|+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 353
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.09 E-value=0.0024 Score=52.96 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 354
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.08 E-value=0.0029 Score=57.03 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|||||||++.++|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999995
No 355
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.04 E-value=0.0028 Score=54.18 Aligned_cols=22 Identities=41% Similarity=0.804 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999874
No 356
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.04 E-value=0.0033 Score=52.04 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999873
No 357
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.03 E-value=0.0029 Score=53.53 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 358
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.03 E-value=0.0029 Score=52.89 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
No 359
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.03 E-value=0.0029 Score=51.74 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 018938 67 RCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~G 87 (348)
.++|+|+.|+|||||++.+++
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999986
No 360
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.03 E-value=0.0029 Score=53.35 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999885
No 361
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.03 E-value=0.0029 Score=51.96 Aligned_cols=21 Identities=52% Similarity=0.710 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 018938 67 RCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~G 87 (348)
.++|+|+.|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999976
No 362
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.02 E-value=0.0034 Score=58.10 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
+| +++|+|+.|+|||||++.|.|.
T Consensus 10 ~g-~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 10 VG-YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EE-EEEEECSTTSSHHHHHHHHHTS
T ss_pred CC-EEEEECCCCCcHHHHHHHHhCC
Confidence 44 8999999999999999999985
No 363
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.01 E-value=0.0031 Score=55.98 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=20.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938 62 LNAGDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 62 i~~Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
..+|-++.|.|+.||||||+.+.|+-.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999999754
No 364
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.01 E-value=0.0031 Score=57.21 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|++|+|||||++.|.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999874
No 365
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.00 E-value=0.003 Score=52.95 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999863
No 366
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.99 E-value=0.015 Score=60.70 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=22.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938 62 LNAGDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 62 i~~Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
+.+-.-+.|.||.|+|||||.|.|++.
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 334455889999999999999999984
No 367
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.99 E-value=0.003 Score=53.13 Aligned_cols=23 Identities=39% Similarity=0.369 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
.++|+|+.|+|||||++.+.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999853
No 368
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.98 E-value=0.0034 Score=56.13 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|||||||++.|+|.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 369
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.98 E-value=0.0026 Score=60.56 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|++|+|||||++.|+|.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999874
No 370
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.97 E-value=0.0051 Score=57.17 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=30.2
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
...+++..+.+ .|.-++|+|+||+|||||...+.+
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 35678888888 788899999999999999998876
No 371
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.96 E-value=0.0033 Score=51.35 Aligned_cols=21 Identities=52% Similarity=0.624 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 018938 67 RCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~G 87 (348)
.++|+|+.|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999999976
No 372
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.96 E-value=0.0038 Score=54.42 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
+|-+++|+|+.||||||+.+.|+-
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999975
No 373
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.96 E-value=0.0035 Score=54.47 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 018938 67 RCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~G 87 (348)
.++|+|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999974
No 374
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.96 E-value=0.0041 Score=52.10 Aligned_cols=23 Identities=52% Similarity=0.730 Sum_probs=20.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 018938 66 DRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~Gl 88 (348)
=.++|+|+.|+|||||++.+.+-
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 375
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.95 E-value=0.0033 Score=52.94 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999874
No 376
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.93 E-value=0.0034 Score=51.87 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 377
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.93 E-value=0.0034 Score=52.29 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999999864
No 378
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.92 E-value=0.0031 Score=52.12 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999863
No 379
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.92 E-value=0.0042 Score=55.97 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
.++|+|+.|||||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
No 380
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.92 E-value=0.0035 Score=52.05 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 381
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.88 E-value=0.0024 Score=55.38 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 018938 66 DRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~Gl 88 (348)
-.++|+|+.|+|||||++.++|-
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 36899999999999999999985
No 382
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.87 E-value=0.0053 Score=51.12 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.+..+.|.||.|+|||||++.++..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999764
No 383
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.86 E-value=0.0037 Score=54.01 Aligned_cols=23 Identities=22% Similarity=0.551 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
.++|+|+.|+|||||++.+++..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
No 384
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.86 E-value=0.0042 Score=56.47 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|..|||||||++.++|.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999995
No 385
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.85 E-value=0.0039 Score=51.78 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 386
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.85 E-value=0.0047 Score=52.38 Aligned_cols=22 Identities=27% Similarity=0.678 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 387
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.84 E-value=0.0044 Score=54.30 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
+|-++.|.|+.||||||+++.|+-.+
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999997543
No 388
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.84 E-value=0.001 Score=57.68 Aligned_cols=45 Identities=29% Similarity=0.341 Sum_probs=33.0
Q ss_pred cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhhh
Q 018938 190 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDGL 237 (348)
Q Consensus 190 ~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~ 237 (348)
.+|.+|++||.-. +|+.....+...+.+. ..+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChHhC
Confidence 4688999999765 7888777777776542 2367888899886543
No 389
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.84 E-value=0.0045 Score=56.58 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 018938 66 DRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~G 87 (348)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999985
No 390
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.82 E-value=0.0037 Score=52.70 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999885
No 391
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.81 E-value=0.0036 Score=52.28 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 392
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.81 E-value=0.0052 Score=52.33 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 393
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.81 E-value=0.0051 Score=51.97 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++-
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999884
No 394
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.81 E-value=0.0057 Score=53.94 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
.+.++.|+|+.||||||+.+.|+-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999975
No 395
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.81 E-value=0.0041 Score=53.01 Aligned_cols=22 Identities=27% Similarity=0.647 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 396
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.80 E-value=0.0051 Score=54.86 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
+|.++.|.|++||||||+++.|+..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999997643
No 397
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.79 E-value=0.0051 Score=53.80 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.++|-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999884
No 398
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.79 E-value=0.0041 Score=52.41 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
No 399
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.79 E-value=0.0042 Score=51.83 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4689999999999999999863
No 400
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.78 E-value=0.0042 Score=52.34 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 401
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.78 E-value=0.0038 Score=52.41 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 402
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.77 E-value=0.0042 Score=52.81 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 403
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.77 E-value=0.0048 Score=58.00 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
+++|+||+|||||||.+.|+..
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 7999999999999999999864
No 404
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.77 E-value=0.0054 Score=59.29 Aligned_cols=28 Identities=29% Similarity=0.251 Sum_probs=23.9
Q ss_pred eEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 60 LTLNAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 60 l~i~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
+.-....++.|+|++||||||+.+.|+.
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3345678999999999999999999875
No 405
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.76 E-value=0.0051 Score=51.72 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999863
No 406
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.75 E-value=0.0047 Score=56.77 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
.++|+|+.|||||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999964
No 407
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.75 E-value=0.0051 Score=52.54 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5799999999999999999874
No 408
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.74 E-value=0.0041 Score=52.70 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 409
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.74 E-value=0.0045 Score=52.75 Aligned_cols=21 Identities=43% Similarity=0.890 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 018938 67 RCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~G 87 (348)
.++|+|++|+|||||++.++|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 410
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.73 E-value=0.0059 Score=53.56 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
+|.++.|-|++||||||+++.|.-.+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999997643
No 411
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.72 E-value=0.0046 Score=51.46 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999853
No 412
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.72 E-value=0.0042 Score=52.49 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999873
No 413
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.70 E-value=0.0042 Score=53.78 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
+++|+|+.|+|||||++.+++.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 414
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.69 E-value=0.0048 Score=51.66 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999984
No 415
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.68 E-value=0.005 Score=51.88 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999863
No 416
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.68 E-value=0.0058 Score=59.88 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=30.7
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
..+++.+ +.+-+|+..+|+|++|+|||||++.|+...
T Consensus 139 ir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 139 IKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred chHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 3456655 677899999999999999999999997643
No 417
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.67 E-value=0.0054 Score=53.18 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 018938 65 GDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 65 Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
+-+++|+|+.||||||+.+.|+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999999863
No 418
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.67 E-value=0.0044 Score=52.89 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999999874
No 419
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.66 E-value=0.0062 Score=55.12 Aligned_cols=25 Identities=40% Similarity=0.680 Sum_probs=22.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCc
Q 018938 66 DRCLLVGSNGAGKTTILKIIGGKHM 90 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~Gl~~ 90 (348)
-.++++|.+|+|||||++.|.|-..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4899999999999999999998643
No 420
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.66 E-value=0.005 Score=51.99 Aligned_cols=22 Identities=27% Similarity=0.637 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 421
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.66 E-value=0.0065 Score=52.33 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 422
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.65 E-value=0.0046 Score=52.26 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4789999999999999999874
No 423
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.62 E-value=0.0021 Score=59.88 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=33.0
Q ss_pred CCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChhh
Q 018938 191 PFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFDG 236 (348)
Q Consensus 191 ~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~ 236 (348)
++.+|++|| ...|++.....+.+.+.+.. ....+|++|++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~--~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS--GVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC--CCceEEEEeCchhh
Confidence 678999999 78899998888888887653 24557777776653
No 424
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.62 E-value=0.0069 Score=51.46 Aligned_cols=22 Identities=32% Similarity=0.671 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 425
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.61 E-value=0.0053 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 426
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.61 E-value=0.0048 Score=53.10 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999988763
No 427
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.59 E-value=0.0055 Score=51.68 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999863
No 428
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.59 E-value=0.0086 Score=52.00 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=28.3
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
...+...-+.+ .|..+.|+||+|||||||...|+-
T Consensus 22 ~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 22 RRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp CCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 34566665665 578899999999999999998875
No 429
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.59 E-value=0.007 Score=53.22 Aligned_cols=27 Identities=33% Similarity=0.372 Sum_probs=24.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
.+|.++.|.|+.||||||+++.|+-.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999998754
No 430
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.58 E-value=0.0063 Score=51.72 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998843
No 431
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.58 E-value=0.0062 Score=50.64 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 018938 67 RCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~G 87 (348)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999999999984
No 432
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.58 E-value=0.0065 Score=52.54 Aligned_cols=22 Identities=36% Similarity=0.747 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 433
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.56 E-value=0.0057 Score=51.40 Aligned_cols=22 Identities=27% Similarity=0.629 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999874
No 434
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.56 E-value=0.0058 Score=52.06 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++-
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5799999999999999999874
No 435
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.55 E-value=0.0059 Score=51.81 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 436
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.55 E-value=0.0065 Score=54.64 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.++|-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999984
No 437
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.54 E-value=0.0068 Score=56.57 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
+++|+||+|||||||.+.|+..
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999874
No 438
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.52 E-value=0.0064 Score=50.54 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.+..+.|.||.|+|||||++.++..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999999999764
No 439
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.52 E-value=0.006 Score=52.22 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++-
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 440
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.52 E-value=0.0066 Score=54.80 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++++|+.|+|||||++.|+|-
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999984
No 441
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.52 E-value=0.007 Score=53.48 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
.+|-++.|.|+.||||||+.+.|+-.+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999997643
No 442
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.51 E-value=0.0072 Score=50.16 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 443
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.51 E-value=0.0054 Score=52.39 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 444
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.50 E-value=0.002 Score=67.56 Aligned_cols=32 Identities=25% Similarity=0.463 Sum_probs=28.6
Q ss_pred eeeEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 58 FTLTLNAGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 58 vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
.++.+.++..+.|+||+|+|||||.++|++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 36678899999999999999999999999864
No 445
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.50 E-value=0.0065 Score=53.77 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 018938 65 GDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 65 Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
|.+++|.|+.||||||+.+.|+-.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999999864
No 446
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.49 E-value=0.0048 Score=51.24 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999863
No 447
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.48 E-value=0.0068 Score=51.44 Aligned_cols=21 Identities=52% Similarity=0.624 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 018938 67 RCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~G 87 (348)
.++|+|+.|+|||||++.+.+
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999976
No 448
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.48 E-value=0.0064 Score=55.30 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
.++|+|..|+|||||++.|+|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999964
No 449
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.47 E-value=0.0048 Score=51.45 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999998863
No 450
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.45 E-value=0.0059 Score=52.38 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 451
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.45 E-value=0.0073 Score=56.70 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
++.+++|+||.|||||||...|+--+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999753
No 452
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.45 E-value=0.0059 Score=52.66 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
No 453
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.44 E-value=0.0068 Score=51.17 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 5799999999999999888763
No 454
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.44 E-value=0.0076 Score=56.03 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 018938 65 GDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 65 Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
+.+++|+||+|||||||...|+--
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 347899999999999999999864
No 455
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.42 E-value=0.0089 Score=52.11 Aligned_cols=22 Identities=41% Similarity=0.824 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|++|+|||||++.++|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 456
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.40 E-value=0.0058 Score=53.80 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhC
Q 018938 61 TLNAGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 61 ~i~~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
.+.+..++.|+||.||||||..+.|+-
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345667899999999999999999974
No 457
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.40 E-value=0.0069 Score=52.06 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++-
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999864
No 458
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.39 E-value=0.0043 Score=53.57 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 459
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.35 E-value=0.0096 Score=52.86 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=21.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
....-+.|.||.|+|||||++.|+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34456889999999999999999863
No 460
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.31 E-value=0.0056 Score=55.00 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
.++-+++|.|+.||||||+.+.|+-.+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 467799999999999999999998643
No 461
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.31 E-value=0.007 Score=51.66 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999874
No 462
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.29 E-value=0.007 Score=59.11 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|++|+|||||++.|+|-
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999983
No 463
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.23 E-value=0.0079 Score=50.76 Aligned_cols=22 Identities=32% Similarity=0.688 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999864
No 464
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.22 E-value=0.0025 Score=57.23 Aligned_cols=30 Identities=37% Similarity=0.680 Sum_probs=23.5
Q ss_pred eeeeEEeCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938 57 DFTLTLNAGDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 57 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
++.+..+.| +.|.||+|+|||||++.|+..
T Consensus 38 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 38 NLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 334444555 779999999999999999873
No 465
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.18 E-value=0.007 Score=50.85 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 018938 67 RCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~G 87 (348)
.++|+|+.|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 466
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.18 E-value=0.0098 Score=51.62 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++-++.-
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999988764
No 467
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.12 E-value=0.011 Score=54.75 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 018938 66 DRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.+++|+||+|||||||...|+-.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 47899999999999999999853
No 468
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.11 E-value=0.012 Score=51.28 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 018938 67 RCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~G 87 (348)
++.|+||.||||+|..+.|+-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
No 469
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.07 E-value=0.0048 Score=52.47 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 470
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.04 E-value=0.0096 Score=50.91 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4799999999999999999863
No 471
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.98 E-value=0.01 Score=50.92 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 018938 67 RCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~G 87 (348)
.++|+|+.|+|||||++.+++
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 588999999999999988875
No 472
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.97 E-value=0.013 Score=50.95 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 65 GDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 65 Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
|.+++|=|+-||||||+++.|+-.+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 5688999999999999999998644
No 473
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.96 E-value=0.018 Score=48.84 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=26.1
Q ss_pred CceeeeeeeEEeCCCEEEEECCCCCcHHHHHHHHh
Q 018938 52 TPLINDFTLTLNAGDRCLLVGSNGAGKTTILKIIG 86 (348)
Q Consensus 52 ~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~i~ 86 (348)
+..++..-+.+ .|.-+.|.|+||+|||||...+.
T Consensus 4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 34555555554 57789999999999999988775
No 474
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.95 E-value=0.011 Score=51.23 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5799999999999999999874
No 475
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.95 E-value=0.015 Score=49.57 Aligned_cols=53 Identities=11% Similarity=0.225 Sum_probs=35.6
Q ss_pred cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh----------hhhhhCCEEEEEc
Q 018938 190 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD----------GLENWPSHIVYVA 248 (348)
Q Consensus 190 ~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~----------~~~~~~d~v~~l~ 248 (348)
.+++++++||--. +++ .+.+.|..+..+ |..|+++.++.+ .+..+||.|..|+
T Consensus 75 ~~~dvviIDE~Q~-~~~----~~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 75 EDTRGVFIDEVQF-FNP----SLFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TTEEEEEECCGGG-SCT----THHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCCEEEEECccc-CCH----HHHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 3678999999743 554 355566666554 889999888655 1223577776664
No 476
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.91 E-value=0.012 Score=50.98 Aligned_cols=22 Identities=32% Similarity=0.629 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999998763
No 477
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.90 E-value=0.014 Score=47.49 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.+.-+.|.||.|+|||++.+.|...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 4556889999999999999999864
No 478
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.82 E-value=0.0068 Score=58.94 Aligned_cols=31 Identities=39% Similarity=0.454 Sum_probs=25.2
Q ss_pred eEEeCC--CEEEEECCCCCcHHHHHHHHhCCCc
Q 018938 60 LTLNAG--DRCLLVGSNGAGKTTILKIIGGKHM 90 (348)
Q Consensus 60 l~i~~G--e~~~liG~NGsGKSTLlk~i~Gl~~ 90 (348)
|.+.++ .+++|+|++|+||||++..|++.+.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444434 5899999999999999999998654
No 479
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.71 E-value=0.016 Score=49.29 Aligned_cols=43 Identities=28% Similarity=0.415 Sum_probs=31.0
Q ss_pred cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecChh
Q 018938 190 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHIFD 235 (348)
Q Consensus 190 ~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 235 (348)
.++.+|++||. ..+++.....+..++.+. ..+..+|++|....
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~--~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY--SKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT--TTTEEEEEEESCGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc--CCCCeEEEEeCChh
Confidence 47889999995 567787777777777653 23566777777654
No 480
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.71 E-value=0.016 Score=52.98 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 018938 66 DRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
-.++|+|.+|+|||||+|.|.|-.
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred ceEEEEecCCCchHHHHHHHhcCc
Confidence 368999999999999999999853
No 481
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=94.69 E-value=0.013 Score=50.19 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999863
No 482
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.60 E-value=0.017 Score=55.46 Aligned_cols=41 Identities=12% Similarity=-0.037 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCCcCccCCCCCHHHHHHHHHHHHHccCCcEEEe
Q 018938 155 RRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLL 197 (348)
Q Consensus 155 ~~~~~l~~l~l~~~~~~~~LSgGqrQRv~lAraL~~~P~lLlL 197 (348)
.+.++++.++... ....+|..+...+.-...+...|-++++
T Consensus 181 ~~~~~l~~l~~~~--~~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPE--DPTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCS--CGGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCC--ccccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 3445555555432 2447899988888777667779998887
No 483
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.55 E-value=0.02 Score=50.72 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=19.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 018938 66 DRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~G 87 (348)
-.+||+|+.||||||+.+.|+-
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 484
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.54 E-value=0.02 Score=52.15 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
++..+.|.||.|+|||||.+.++..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4557899999999999999988864
No 485
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.43 E-value=0.018 Score=55.31 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=19.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 018938 66 DRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~G 87 (348)
.+++|.||+|||||||.+.|+-
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 3789999999999999999875
No 486
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.40 E-value=0.021 Score=53.74 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 65 GDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 65 Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
.-+++|+|+.|+|||||++.|++.+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3489999999999999999997643
No 487
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.38 E-value=0.0051 Score=52.39 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|+.|+|||||++.+++-
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998874
No 488
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.36 E-value=0.018 Score=55.91 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.++|+|++|+|||||++.|+|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 489
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.29 E-value=0.014 Score=50.53 Aligned_cols=21 Identities=48% Similarity=0.822 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHH-HhC
Q 018938 67 RCLLVGSNGAGKTTILKI-IGG 87 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~-i~G 87 (348)
.++|+|+.|+|||||++. +.|
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999998 544
No 490
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.32 E-value=0.0078 Score=51.37 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 018938 67 RCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~G 87 (348)
.++|+|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999998876
No 491
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.28 E-value=0.022 Score=51.15 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=20.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGG 87 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~G 87 (348)
+...+.|.||.|+|||||.+.|+.
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 344688999999999999999986
No 492
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=94.26 E-value=0.016 Score=54.52 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 018938 67 RCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 67 ~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
.++|+|..|+|||||++.|+|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999964
No 493
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.26 E-value=0.028 Score=51.94 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 018938 65 GDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 65 Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
+.-+.|.||.|+|||+|+++|+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999863
No 494
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.20 E-value=0.31 Score=43.07 Aligned_cols=52 Identities=21% Similarity=0.186 Sum_probs=38.5
Q ss_pred cCCcEEEeeccCCCCCHHHHHHHHHHHHHHHHhcCcEEEEEecC----------hhhhhhhCCEEEEEc
Q 018938 190 KPFKVLLLDEITVDLDVLARADLLRFLRKECEERGATIIYATHI----------FDGLENWPSHIVYVA 248 (348)
Q Consensus 190 ~~P~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~~g~tviivtHd----------~~~~~~~~d~v~~l~ 248 (348)
.+.+++++||---..| +.++++.+. +.|+.||+.-+| ...+..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~-~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMA-NAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHH-HTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHH-hCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999977754 444444433 369999999999 344557899998764
No 495
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.16 E-value=0.027 Score=52.31 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhCC
Q 018938 63 NAGDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 63 ~~Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
.+..-+.|.||.|+|||||.+.++..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHHH
Confidence 34567899999999999999999974
No 496
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.12 E-value=0.023 Score=52.39 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 018938 66 DRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~Gl 88 (348)
-.++|+|+.|+|||||++.+.+-
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998774
No 497
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.09 E-value=0.026 Score=51.16 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 65 GDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 65 Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
+.-+.|.||.|+|||||++.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999998743
No 498
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.08 E-value=0.026 Score=53.11 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGKH 89 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl~ 89 (348)
++..+.|.||+|+||||+.+.|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34568899999999999999998753
No 499
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.04 E-value=0.021 Score=54.16 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 018938 64 AGDRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 64 ~Ge~~~liG~NGsGKSTLlk~i~Gl 88 (348)
++..++++|.+|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4668999999999999999999984
No 500
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.00 E-value=0.028 Score=51.38 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 018938 66 DRCLLVGSNGAGKTTILKIIGGK 88 (348)
Q Consensus 66 e~~~liG~NGsGKSTLlk~i~Gl 88 (348)
..+.|.||.|+|||+|.+.|+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45778899999999999999863
Done!