Query 018939
Match_columns 348
No_of_seqs 193 out of 2182
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:19:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1322 GDP-mannose pyrophosph 100.0 3.3E-48 7.1E-53 365.2 21.0 216 86-347 4-220 (371)
2 COG0448 GlgC ADP-glucose pyrop 100.0 3.1E-47 6.6E-52 369.2 19.5 232 90-347 3-237 (393)
3 PLN02241 glucose-1-phosphate a 100.0 8.4E-40 1.8E-44 329.1 27.0 256 90-347 1-257 (436)
4 PRK02862 glgC glucose-1-phosph 100.0 1.1E-36 2.3E-41 306.0 26.1 249 90-347 1-249 (429)
5 PRK00844 glgC glucose-1-phosph 100.0 1.4E-35 3E-40 295.9 24.6 236 89-347 2-240 (407)
6 PRK05293 glgC glucose-1-phosph 100.0 3.9E-35 8.5E-40 289.4 25.3 230 90-347 1-234 (380)
7 PRK00725 glgC glucose-1-phosph 100.0 1.2E-34 2.5E-39 290.9 25.9 237 90-347 13-252 (425)
8 PF00483 NTP_transferase: Nucl 100.0 3.5E-34 7.7E-39 265.2 21.3 213 94-345 1-217 (248)
9 PRK10122 GalU regulator GalF; 100.0 7.4E-33 1.6E-37 265.9 24.4 220 90-347 1-253 (297)
10 cd06428 M1P_guanylylT_A_like_N 100.0 1.1E-32 2.4E-37 258.2 23.9 212 95-347 1-234 (257)
11 TIGR01105 galF UTP-glucose-1-p 100.0 1.3E-32 2.8E-37 264.2 24.8 220 90-347 1-253 (297)
12 cd06425 M1P_guanylylT_B_like_N 100.0 2.4E-32 5.2E-37 252.1 23.4 208 93-347 1-209 (233)
13 COG1208 GCD1 Nucleoside-diphos 100.0 3.3E-32 7.2E-37 267.6 23.0 209 92-347 1-211 (358)
14 PRK15480 glucose-1-phosphate t 100.0 6.4E-32 1.4E-36 258.7 24.3 208 90-345 1-213 (292)
15 TIGR02091 glgC glucose-1-phosp 100.0 3.4E-32 7.4E-37 266.6 22.7 231 95-347 1-234 (361)
16 COG1209 RfbA dTDP-glucose pyro 100.0 3.3E-32 7.2E-37 252.5 21.2 205 93-343 1-207 (286)
17 TIGR01099 galU UTP-glucose-1-p 100.0 7.7E-32 1.7E-36 252.4 19.8 221 93-347 1-241 (260)
18 cd04181 NTP_transferase NTP_tr 100.0 3.3E-31 7.1E-36 239.8 23.2 206 95-347 1-206 (217)
19 cd02538 G1P_TT_short G1P_TT_sh 100.0 4.9E-31 1.1E-35 244.4 23.3 207 93-346 1-211 (240)
20 TIGR02623 G1P_cyt_trans glucos 100.0 7E-31 1.5E-35 246.5 23.4 216 94-347 1-221 (254)
21 TIGR02092 glgD glucose-1-phosp 100.0 2E-31 4.3E-36 262.2 20.3 225 92-347 2-229 (369)
22 TIGR01207 rmlA glucose-1-phosp 100.0 6.4E-31 1.4E-35 251.2 23.1 204 94-344 1-208 (286)
23 cd02541 UGPase_prokaryotic Pro 100.0 7.7E-31 1.7E-35 246.7 22.2 219 93-347 1-241 (267)
24 cd06422 NTP_transferase_like_1 100.0 9.7E-31 2.1E-35 239.1 21.2 200 94-347 1-202 (221)
25 cd04197 eIF-2B_epsilon_N The N 100.0 9.8E-31 2.1E-35 239.4 19.0 207 93-317 1-217 (217)
26 cd02524 G1P_cytidylyltransfera 100.0 7.5E-30 1.6E-34 238.7 22.9 217 95-347 1-222 (253)
27 PRK13389 UTP--glucose-1-phosph 100.0 1.4E-29 3.1E-34 243.6 24.1 220 91-347 7-256 (302)
28 cd06915 NTP_transferase_WcbM_l 100.0 2E-29 4.4E-34 228.6 22.4 203 95-347 1-203 (223)
29 cd04189 G1P_TT_long G1P_TT_lon 100.0 1.5E-28 3.3E-33 226.3 24.1 206 93-346 1-209 (236)
30 TIGR01208 rmlA_long glucose-1- 100.0 1.1E-28 2.5E-33 241.3 23.8 207 94-347 1-211 (353)
31 COG1210 GalU UDP-glucose pyrop 100.0 1.5E-28 3.2E-33 228.3 17.0 222 91-347 3-246 (291)
32 cd06426 NTP_transferase_like_2 100.0 1.6E-27 3.5E-32 217.0 22.6 199 95-347 1-200 (220)
33 cd02508 ADP_Glucose_PP ADP-glu 100.0 9.4E-28 2E-32 216.9 19.5 189 95-347 1-190 (200)
34 cd02509 GDP-M1P_Guanylyltransf 100.0 2.9E-27 6.4E-32 224.6 19.4 201 93-328 1-213 (274)
35 cd04183 GT2_BcE_like GT2_BcbE_ 100.0 5.6E-27 1.2E-31 215.4 20.2 206 95-347 1-213 (231)
36 KOG1460 GDP-mannose pyrophosph 99.9 2.2E-27 4.8E-32 221.5 14.7 217 91-347 1-240 (407)
37 cd02523 PC_cytidylyltransferas 99.9 5E-26 1.1E-30 209.0 20.1 198 95-342 1-203 (229)
38 cd02507 eIF-2B_gamma_N_like Th 99.9 1.6E-26 3.4E-31 211.8 16.5 204 93-317 1-216 (216)
39 PRK14358 glmU bifunctional N-a 99.9 1.2E-25 2.7E-30 229.0 22.5 209 90-347 5-219 (481)
40 cd02540 GT2_GlmU_N_bac N-termi 99.9 1.3E-24 2.8E-29 198.9 22.0 205 95-347 1-211 (229)
41 PRK14355 glmU bifunctional N-a 99.9 1.5E-24 3.3E-29 219.4 23.4 211 90-347 1-217 (459)
42 PRK14352 glmU bifunctional N-a 99.9 2.9E-24 6.3E-29 218.7 23.5 213 90-347 2-220 (482)
43 cd04198 eIF-2B_gamma_N The N-t 99.9 5.4E-25 1.2E-29 201.2 15.3 201 93-317 1-214 (214)
44 PRK09451 glmU bifunctional N-a 99.9 3.8E-24 8.2E-29 216.2 22.5 206 90-347 3-214 (456)
45 COG1207 GlmU N-acetylglucosami 99.9 4.7E-24 1E-28 208.1 19.9 206 91-342 1-211 (460)
46 TIGR01479 GMP_PMI mannose-1-ph 99.9 1.6E-23 3.5E-28 212.8 19.6 201 93-328 1-215 (468)
47 PRK14360 glmU bifunctional N-a 99.9 6E-23 1.3E-27 206.7 23.0 201 93-340 2-207 (450)
48 TIGR01173 glmU UDP-N-acetylglu 99.9 6.6E-23 1.4E-27 206.0 22.0 203 93-346 1-209 (451)
49 PRK14354 glmU bifunctional N-a 99.9 2.3E-22 5E-27 202.9 23.0 207 91-346 1-213 (458)
50 PRK14357 glmU bifunctional N-a 99.9 2.3E-22 4.9E-27 202.5 21.3 194 93-339 1-199 (448)
51 PRK14356 glmU bifunctional N-a 99.9 3.4E-22 7.4E-27 201.7 22.2 207 92-346 5-217 (456)
52 PRK14359 glmU bifunctional N-a 99.9 1.5E-21 3.2E-26 195.4 22.2 204 91-346 1-208 (430)
53 PRK14353 glmU bifunctional N-a 99.9 4.3E-21 9.3E-26 193.2 24.1 209 90-346 3-217 (446)
54 KOG1462 Translation initiation 99.9 6.8E-23 1.5E-27 197.3 10.4 230 90-344 7-248 (433)
55 PRK15460 cpsB mannose-1-phosph 99.9 1.1E-20 2.3E-25 191.7 17.1 213 91-335 4-231 (478)
56 PRK05450 3-deoxy-manno-octulos 99.8 2.3E-19 5E-24 166.4 22.0 188 91-322 1-194 (245)
57 cd02517 CMP-KDO-Synthetase CMP 99.8 6E-19 1.3E-23 163.0 20.3 183 92-322 1-191 (239)
58 COG0836 {ManC} Mannose-1-phosp 99.8 2.3E-19 5E-24 170.4 17.2 204 92-328 1-217 (333)
59 COG1213 Predicted sugar nucleo 99.8 5.2E-18 1.1E-22 155.3 14.4 176 91-322 2-179 (239)
60 PRK13368 3-deoxy-manno-octulos 99.8 1.5E-16 3.2E-21 146.9 21.7 178 92-320 2-187 (238)
61 COG4750 LicC CTP:phosphocholin 99.7 1.3E-16 2.8E-21 141.4 15.6 193 93-345 1-199 (231)
62 PLN02917 CMP-KDO synthetase 99.7 1.6E-15 3.5E-20 145.6 20.5 187 89-320 44-236 (293)
63 KOG1461 Translation initiation 99.6 9.8E-15 2.1E-19 148.3 19.7 233 90-346 22-263 (673)
64 PF12804 NTP_transf_3: MobA-li 99.6 3E-15 6.5E-20 129.7 12.0 122 95-249 1-124 (160)
65 TIGR00454 conserved hypothetic 99.6 1.1E-14 2.4E-19 130.7 13.3 127 93-251 1-129 (183)
66 cd04182 GT_2_like_f GT_2_like_ 99.6 5.6E-14 1.2E-18 123.8 12.9 123 93-245 1-125 (186)
67 cd02516 CDP-ME_synthetase CDP- 99.5 3.3E-13 7.2E-18 122.7 14.8 173 93-324 1-176 (218)
68 TIGR00466 kdsB 3-deoxy-D-manno 99.5 3.5E-12 7.6E-17 118.9 21.6 189 95-323 2-195 (238)
69 cd02513 CMP-NeuAc_Synthase CMP 99.5 1.1E-12 2.4E-17 119.4 17.1 183 92-320 1-189 (223)
70 TIGR00453 ispD 2-C-methyl-D-er 99.5 6.1E-13 1.3E-17 121.3 14.8 165 95-323 2-170 (217)
71 TIGR03310 matur_ygfJ molybdenu 99.5 2.5E-13 5.4E-18 120.5 11.9 123 95-247 2-126 (188)
72 PRK00155 ispD 2-C-methyl-D-ery 99.5 6.4E-13 1.4E-17 122.2 14.8 171 90-323 1-175 (227)
73 PRK13385 2-C-methyl-D-erythrit 99.4 3E-12 6.6E-17 118.2 15.6 171 92-323 2-176 (230)
74 cd02503 MobA MobA catalyzes th 99.4 1.9E-12 4.1E-17 114.5 12.3 116 93-246 1-118 (181)
75 PRK09382 ispDF bifunctional 2- 99.4 8.2E-12 1.8E-16 123.9 16.4 154 90-280 3-159 (378)
76 cd04193 UDPGlcNAc_PPase UDPGlc 99.4 3.5E-11 7.5E-16 117.1 19.1 217 91-323 14-257 (323)
77 COG2266 GTP:adenosylcobinamide 99.4 7.2E-12 1.6E-16 110.2 12.1 110 93-237 1-112 (177)
78 PRK00317 mobA molybdopterin-gu 99.4 8.7E-12 1.9E-16 111.8 12.8 119 90-243 1-121 (193)
79 TIGR03202 pucB xanthine dehydr 99.3 2E-11 4.4E-16 109.2 13.9 126 94-244 2-129 (190)
80 TIGR02665 molyb_mobA molybdopt 99.3 2.3E-11 5E-16 108.0 12.3 120 93-245 1-122 (186)
81 cd04180 UGPase_euk_like Eukary 99.3 3E-10 6.6E-15 107.8 20.5 214 93-322 1-241 (266)
82 PLN02728 2-C-methyl-D-erythrit 99.3 7.9E-11 1.7E-15 110.9 15.1 145 91-271 23-170 (252)
83 PRK02726 molybdopterin-guanine 99.2 1.2E-10 2.5E-15 105.7 13.5 114 90-238 5-120 (200)
84 PRK14489 putative bifunctional 99.2 1.5E-10 3.2E-15 114.6 13.1 124 90-246 3-128 (366)
85 PTZ00339 UDP-N-acetylglucosami 99.2 1.1E-09 2.4E-14 111.4 19.5 216 91-322 105-351 (482)
86 PF01128 IspD: 2-C-methyl-D-er 99.2 5E-09 1.1E-13 96.8 21.1 170 93-324 1-173 (221)
87 TIGR03584 PseF pseudaminic aci 99.2 2.3E-09 4.9E-14 99.1 18.1 181 95-319 2-185 (222)
88 COG0746 MobA Molybdopterin-gua 99.1 2.9E-10 6.3E-15 102.9 10.8 113 90-240 2-116 (192)
89 COG2068 Uncharacterized MobA-r 99.1 7.6E-10 1.6E-14 99.8 12.3 122 90-240 3-126 (199)
90 PRK00560 molybdopterin-guanine 99.1 7.6E-10 1.6E-14 100.1 11.8 107 87-232 3-112 (196)
91 COG1211 IspD 4-diphosphocytidy 99.0 1.6E-08 3.5E-13 93.7 15.8 151 90-274 2-155 (230)
92 PRK14490 putative bifunctional 99.0 4.9E-09 1.1E-13 103.9 12.7 113 87-235 169-283 (369)
93 cd02518 GT2_SpsF SpsF is a gly 99.0 8.6E-09 1.9E-13 95.1 13.2 116 95-245 2-122 (233)
94 cd00897 UGPase_euk Eukaryotic 98.9 1.8E-07 3.9E-12 90.2 20.4 215 91-323 2-234 (300)
95 PRK14500 putative bifunctional 98.8 2.8E-08 6.1E-13 97.7 11.5 109 92-236 160-270 (346)
96 PLN02474 UTP--glucose-1-phosph 98.8 8.3E-07 1.8E-11 90.1 20.0 215 90-323 77-310 (469)
97 COG1212 KdsB CMP-2-keto-3-deox 98.7 6.2E-07 1.3E-11 82.2 16.8 188 91-324 2-194 (247)
98 COG4284 UDP-glucose pyrophosph 98.7 6.8E-07 1.5E-11 89.7 18.4 214 90-321 103-338 (472)
99 PF01704 UDPGP: UTP--glucose-1 98.7 4.6E-07 9.9E-12 91.2 16.5 215 90-323 54-289 (420)
100 cd06424 UGGPase UGGPase cataly 98.7 5.7E-07 1.2E-11 87.1 16.3 216 94-324 2-254 (315)
101 PLN02435 probable UDP-N-acetyl 98.6 9.5E-07 2.1E-11 90.2 16.4 212 91-322 115-364 (493)
102 PLN02830 UDP-sugar pyrophospho 98.4 3.4E-05 7.4E-10 81.0 20.2 221 91-323 127-384 (615)
103 COG1083 NeuA CMP-N-acetylneura 98.2 3.2E-05 6.9E-10 70.5 12.7 184 90-319 1-187 (228)
104 PF02348 CTP_transf_3: Cytidyl 97.9 0.00024 5.3E-09 64.4 13.9 181 94-319 1-190 (217)
105 COG1861 SpsF Spore coat polysa 97.8 0.0005 1.1E-08 63.2 12.4 119 91-244 2-125 (241)
106 PRK00576 molybdopterin-guanine 97.7 0.00058 1.3E-08 60.4 11.3 99 113-241 3-105 (178)
107 KOG2388 UDP-N-acetylglucosamin 96.5 0.0062 1.3E-07 61.6 7.1 214 91-324 96-340 (477)
108 KOG2638 UDP-glucose pyrophosph 96.4 0.22 4.8E-06 49.9 16.8 214 91-323 102-335 (498)
109 cd00761 Glyco_tranf_GTA_type G 96.2 0.13 2.9E-06 41.5 12.4 99 117-237 2-103 (156)
110 TIGR03552 F420_cofC 2-phospho- 95.2 0.15 3.4E-06 45.3 9.4 85 125-237 31-117 (195)
111 PF00535 Glycos_transf_2: Glyc 94.1 1.2 2.6E-05 36.8 11.9 111 117-249 3-116 (169)
112 PRK13412 fkp bifunctional fuco 89.9 0.53 1.1E-05 52.4 5.7 108 215-341 154-271 (974)
113 cd06434 GT2_HAS Hyaluronan syn 88.8 10 0.00022 33.8 12.6 105 117-247 5-111 (235)
114 cd04179 DPM_DPG-synthase_like 88.7 9.2 0.0002 32.6 11.8 108 118-247 3-115 (185)
115 cd06423 CESA_like CESA_like is 88.2 13 0.00027 30.4 12.0 101 118-239 3-106 (180)
116 cd04186 GT_2_like_c Subfamily 88.1 13 0.00029 30.5 12.5 98 118-240 3-103 (166)
117 PLN02726 dolichyl-phosphate be 87.8 15 0.00033 33.5 13.3 49 192-246 79-128 (243)
118 cd02525 Succinoglycan_BP_ExoA 87.8 14 0.00031 32.9 12.9 109 117-248 5-118 (249)
119 cd04188 DPG_synthase DPG_synth 85.8 16 0.00035 32.2 11.9 50 192-247 68-118 (211)
120 PRK10073 putative glycosyl tra 85.6 12 0.00026 36.5 11.8 106 118-246 12-120 (328)
121 PF07959 Fucokinase: L-fucokin 85.2 0.48 1E-05 48.0 1.9 116 213-341 53-193 (414)
122 cd06427 CESA_like_2 CESA_like_ 82.7 35 0.00077 30.9 13.1 111 117-248 6-121 (241)
123 cd06442 DPM1_like DPM1_like re 82.2 30 0.00065 30.4 12.2 107 118-246 3-113 (224)
124 cd02510 pp-GalNAc-T pp-GalNAc- 80.9 34 0.00073 32.3 12.6 104 118-241 4-113 (299)
125 cd06439 CESA_like_1 CESA_like_ 80.1 45 0.00097 30.0 14.5 100 117-240 34-138 (251)
126 cd04184 GT2_RfbC_Mx_like Myxoc 78.6 43 0.00092 28.9 12.3 104 118-243 7-116 (202)
127 cd04192 GT_2_like_e Subfamily 76.8 51 0.0011 28.8 12.3 106 117-241 2-112 (229)
128 PRK11204 N-glycosyltransferase 76.8 46 0.001 33.0 12.7 96 125-246 67-168 (420)
129 cd04187 DPM1_like_bac Bacteria 76.4 40 0.00086 28.7 10.7 48 192-246 66-114 (181)
130 cd04195 GT2_AmsE_like GT2_AmsE 75.3 53 0.0011 28.3 12.3 99 117-238 3-107 (201)
131 PRK14583 hmsR N-glycosyltransf 73.5 51 0.0011 33.3 12.2 104 117-246 80-189 (444)
132 KOG2978 Dolichol-phosphate man 72.6 79 0.0017 29.0 12.7 100 125-248 19-125 (238)
133 PRK10018 putative glycosyl tra 72.4 87 0.0019 29.8 12.8 98 118-238 11-112 (279)
134 cd04185 GT_2_like_b Subfamily 70.7 70 0.0015 27.7 12.1 100 118-237 3-105 (202)
135 cd06433 GT_2_WfgS_like WfgS an 69.5 69 0.0015 27.1 11.7 101 118-243 4-108 (202)
136 cd06438 EpsO_like EpsO protein 69.4 73 0.0016 27.3 13.0 109 117-246 2-115 (183)
137 PF13641 Glyco_tranf_2_3: Glyc 68.9 25 0.00055 31.1 8.0 107 117-243 6-118 (228)
138 TIGR03472 HpnI hopanoid biosyn 67.7 90 0.002 30.7 12.2 101 117-237 46-152 (373)
139 cd06421 CESA_CelA_like CESA_Ce 65.7 95 0.0021 27.3 13.3 107 118-247 7-119 (234)
140 cd06435 CESA_NdvC_like NdvC_li 64.6 1E+02 0.0022 27.3 11.4 99 117-237 3-110 (236)
141 cd02520 Glucosylceramide_synth 61.9 1.1E+02 0.0023 26.6 11.1 100 118-237 7-112 (196)
142 TIGR03469 HonB hopene-associat 61.5 1.7E+02 0.0037 28.9 13.1 106 125-243 53-165 (384)
143 cd02522 GT_2_like_a GT_2_like_ 61.3 1.1E+02 0.0024 26.6 12.1 95 117-240 4-101 (221)
144 TIGR03111 glyc2_xrt_Gpos1 puta 60.4 2E+02 0.0042 29.1 13.4 41 192-238 117-158 (439)
145 TIGR01556 rhamnosyltran L-rham 58.5 1.5E+02 0.0033 27.3 16.1 97 126-246 9-108 (281)
146 cd04196 GT_2_like_d Subfamily 58.5 1.2E+02 0.0026 26.1 11.1 100 117-237 3-105 (214)
147 PRK11498 bcsA cellulose syntha 56.8 1.5E+02 0.0033 33.1 12.4 105 118-249 266-376 (852)
148 PTZ00260 dolichyl-phosphate be 55.3 2.1E+02 0.0045 27.9 12.5 50 192-247 148-201 (333)
149 cd02511 Beta4Glucosyltransfera 55.3 1.6E+02 0.0034 26.5 11.8 92 117-237 5-97 (229)
150 COG1215 Glycosyltransferases, 51.3 1.8E+02 0.0039 28.6 11.2 105 117-241 59-167 (439)
151 PRK13915 putative glucosyl-3-p 49.0 2.4E+02 0.0052 27.1 11.3 51 192-248 101-154 (306)
152 cd06437 CESA_CaSu_A2 Cellulose 48.0 1.9E+02 0.0041 25.7 9.9 95 118-234 7-110 (232)
153 PRK10714 undecaprenyl phosphat 44.9 2.8E+02 0.006 26.8 11.1 46 192-244 76-122 (325)
154 TIGR02990 ectoine_eutA ectoine 40.9 2E+02 0.0044 26.8 9.1 96 126-234 107-202 (239)
155 TIGR03030 CelA cellulose synth 40.2 4E+02 0.0087 28.9 12.4 50 193-249 215-265 (713)
156 cd06420 GT2_Chondriotin_Pol_N 39.7 2.3E+02 0.0049 23.7 11.7 99 118-236 3-104 (182)
157 PRK00923 sirohydrochlorin coba 39.4 50 0.0011 27.2 4.3 24 122-146 44-67 (126)
158 COG1216 Predicted glycosyltran 38.9 3.4E+02 0.0075 25.6 11.4 104 120-245 12-118 (305)
159 PRK10063 putative glycosyl tra 35.9 3.5E+02 0.0076 24.9 13.4 92 125-240 14-110 (248)
160 cd02526 GT2_RfbF_like RfbF is 35.9 3E+02 0.0066 24.1 16.0 86 125-233 11-97 (237)
161 cd03413 CbiK_C Anaerobic cobal 26.0 1.6E+02 0.0035 23.7 5.0 24 122-146 40-63 (103)
162 cd06167 LabA_like LabA_like pr 25.7 2.1E+02 0.0045 23.8 6.0 35 211-249 98-132 (149)
163 cd04180 UGPase_euk_like Eukary 25.6 12 0.00025 35.7 -2.1 64 216-280 110-178 (266)
164 cd06436 GlcNAc-1-P_transferase 25.3 4.4E+02 0.0096 22.7 12.0 105 118-236 3-114 (191)
165 PF01762 Galactosyl_T: Galacto 23.4 2.5E+02 0.0054 24.7 6.3 24 301-324 144-167 (195)
166 PRK05782 bifunctional sirohydr 23.3 1.3E+02 0.0028 29.7 4.7 67 89-158 2-89 (335)
167 PF01936 NYN: NYN domain; Int 22.6 1.8E+02 0.004 23.7 5.0 32 213-248 96-127 (146)
168 PRK14716 bacteriophage N4 adso 21.9 9.2E+02 0.02 25.2 12.7 100 121-237 75-183 (504)
No 1
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=3.3e-48 Score=365.20 Aligned_cols=216 Identities=43% Similarity=0.694 Sum_probs=196.4
Q ss_pred CCCCCCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCC
Q 018939 86 PQADPKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGN 165 (348)
Q Consensus 86 ~~~~~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~ 165 (348)
.+++ +.|+||||.||.||||+|||..+|||++|++++ |||+|++++|+++||++|+++++|+++++++|+.+.|
T Consensus 4 ~~~~-~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~-pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y---- 77 (371)
T KOG1322|consen 4 RPAD-QSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNK-PMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY---- 77 (371)
T ss_pred cccc-cceeEEEEecCCCceeeceeccCCCcccccCcc-hhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh----
Confidence 3445 789999999999999999999999999999966 9999999999999999999999999999999999998
Q ss_pred CcccCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEE
Q 018939 166 GVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITV 245 (348)
Q Consensus 166 g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi 245 (348)
+.++| |+|+++.|++ +.|++||++++|+++|.++ +.+|+|++||++|+++|++|+++|+++++++|+
T Consensus 78 ~~~lg---Vei~~s~ete----plgtaGpl~laR~~L~~~~------~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI 144 (371)
T KOG1322|consen 78 GKELG---VEILASTETE----PLGTAGPLALARDFLWVFE------DAPFFVLNSDVICRMPYKEMVQFHRAHGAEITI 144 (371)
T ss_pred hhccc---eEEEEEeccC----CCcccchHHHHHHHhhhcC------CCcEEEecCCeeecCCHHHHHHHHHhcCCceEE
Confidence 33444 8999988876 6899999999999999885 249999999999999999999999999999999
Q ss_pred EEEecCCCCCCcceEEEECC-CCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhh
Q 018939 246 SCVPMDDCRASDYGLMKIDR-SGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSS 324 (348)
Q Consensus 246 ~~~~~~~~~~~~~g~v~id~-~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~ 324 (348)
++.++++ ++.||+|++|+ .|+|++|.|||+ +..+ +-++||+|+|++++|++++ .
T Consensus 145 ~~t~vde--pSkyGvv~~d~~~grV~~F~EKPk--d~vs-------------------nkinaGiYi~~~~vL~ri~--~ 199 (371)
T KOG1322|consen 145 VVTKVDE--PSKYGVVVIDEDTGRVIRFVEKPK--DLVS-------------------NKINAGIYILNPEVLDRIL--L 199 (371)
T ss_pred EEEeccC--ccccceEEEecCCCceeEehhCch--hhhh-------------------ccccceEEEECHHHHhHhh--h
Confidence 9999987 89999999999 899999999998 3332 4457999999999999987 4
Q ss_pred CCCCcchhhhhHHhccccCCeee
Q 018939 325 YPLSNDFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 325 ~~~~~d~~~diip~l~~~~~v~~ 347 (348)
+|++ |++|++|.++++++|||
T Consensus 200 ~ptS--iekEifP~~a~~~~l~a 220 (371)
T KOG1322|consen 200 RPTS--IEKEIFPAMAEEHQLYA 220 (371)
T ss_pred cccc--hhhhhhhhhhhcCceEE
Confidence 5766 99999999999999997
No 2
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-47 Score=369.18 Aligned_cols=232 Identities=47% Similarity=0.791 Sum_probs=208.2
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
++++.++|||||.|+||.|||..|+||.+|+||+|+|||++|+||.|+||.+|.|+|++++.+|++||.+-|+|+.+.
T Consensus 3 ~~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~-- 80 (393)
T COG0448 3 KKNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDR-- 80 (393)
T ss_pred ccceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCcccccc--
Confidence 356889999999999999999999999999999999999999999999999999999999999999999877664332
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEe
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVP 249 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~ 249 (348)
..+++.++++.|. +.++.|+.|||+|+++-++++++ ...|+++|++|||+|++||.+++++|++++||+|++|.+
T Consensus 81 ~~~~v~ilp~~~~--~~~~~wy~Gtadai~Qnl~~i~~---~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~ 155 (393)
T COG0448 81 KNGGVFILPAQQR--EGGERWYEGTADAIYQNLLIIRR---SDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKE 155 (393)
T ss_pred ccCcEEEeCchhc--cCCCcceeccHHHHHHhHHHHHh---cCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEE
Confidence 2456899987766 35668999999999999999985 478999999999999999999999999999999999999
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCC---
Q 018939 250 MDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP--- 326 (348)
Q Consensus 250 ~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~--- 326 (348)
++.++++.||++.+|++|+|++|.|||..... ...++|||+|+|++++|.++|++...
T Consensus 156 Vp~~eas~fGim~~D~~~~i~~F~eKp~~~~~-------------------~~~laSMgiYIf~~~~L~~~L~~~~~~~~ 216 (393)
T COG0448 156 VPREEASRFGVMNVDENGRIIEFVEKPADGPP-------------------SNSLASMGIYIFNTDLLKELLEEDAKDPN 216 (393)
T ss_pred CChHhhhhcCceEECCCCCEEeeeeccCcCCc-------------------ccceeeeeeEEEcHHHHHHHHHHHhcccC
Confidence 99888999999999999999999999987221 12379999999999999999986543
Q ss_pred CCcchhhhhHHhccccCCeee
Q 018939 327 LSNDFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 327 ~~~d~~~diip~l~~~~~v~~ 347 (348)
+..||+.|+||.++++++++|
T Consensus 217 ~~~DfgkdiIp~~~~~~~v~A 237 (393)
T COG0448 217 SSHDFGKDIIPKLLERGKVYA 237 (393)
T ss_pred ccccchHHHHHHHHhcCCEEE
Confidence 369999999999999998886
No 3
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=8.4e-40 Score=329.09 Aligned_cols=256 Identities=75% Similarity=1.239 Sum_probs=216.9
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
|++|++||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++|+|+++++.+++.+|+.+.|.++....+
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 57899999999999999999999999999999988999999999999999999999999999999999876655544444
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEe
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVP 249 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~ 249 (348)
+.+.++++...|.. .++.|++||++|++.+++++++..+++.++|||++||++++.|+.++++.|.++++++|+++.+
T Consensus 81 ~~~~~~i~~~~q~~--~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~ 158 (436)
T PLN02241 81 GDGFVEVLAATQTP--GEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLP 158 (436)
T ss_pred CCCCEEEcCCcccC--CCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEe
Confidence 44456666554432 2235789999999999988875322236899999999999999999999999999999999998
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCCCc
Q 018939 250 MDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN 329 (348)
Q Consensus 250 ~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~~~ 329 (348)
++.+++++||++.+|++++|.+|.|||..+....++++++++++++.+.+...+++++|+|+|++++|..++++..+...
T Consensus 159 v~~~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~ 238 (436)
T PLN02241 159 VDESRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTAN 238 (436)
T ss_pred cchhhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccccc
Confidence 87656789999999999999999999976656667888999988876555567899999999999999888877666556
Q ss_pred chhhhhHHhcccc-CCeee
Q 018939 330 DFGSEIIPASVKD-HNVQV 347 (348)
Q Consensus 330 d~~~diip~l~~~-~~v~~ 347 (348)
+|..|+++.++++ .+|++
T Consensus 239 ~~~~dil~~l~~~g~~v~~ 257 (436)
T PLN02241 239 DFGSEIIPGAIKEGYNVQA 257 (436)
T ss_pred chhHHHHHHHhhcCCeEEE
Confidence 8999999999987 57765
No 4
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.1e-36 Score=306.01 Aligned_cols=249 Identities=60% Similarity=1.026 Sum_probs=204.9
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
|+++.|||||||.||||+|||..+||||+||+|+||||+|++++|.++|+++|+|+++++.+++.+|+.+.|.+. .+
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~---~~ 77 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD---GF 77 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc---cc
Confidence 457899999999999999999999999999999989999999999999999999999999999999997655221 11
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEe
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVP 249 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~ 249 (348)
..+.+.++...|.. ....|++||++|++++++++.+ ...++|+|++||++++.|+.++++.|.+.++++|+++.+
T Consensus 78 ~~g~~~i~~~~~~~--~~~~~~lGTa~al~~a~~~l~~---~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~ 152 (429)
T PRK02862 78 SGGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQE---WDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLP 152 (429)
T ss_pred CCCEEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEe
Confidence 22335555444432 2234668999999999998853 134789999999999999999999999999999999987
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCCCc
Q 018939 250 MDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN 329 (348)
Q Consensus 250 ~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~~~ 329 (348)
.+.+.++.||++.+|++|+|.+|.|||.......+.++.++|...+.+.+...+++++|+|+|++++|..+++.. +...
T Consensus 153 ~~~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~-~~~~ 231 (429)
T PRK02862 153 VDEKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKN-PEYT 231 (429)
T ss_pred cChhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHC-CChh
Confidence 764457789999999999999999999865555667777777777666555668999999999999998877653 3456
Q ss_pred chhhhhHHhccccCCeee
Q 018939 330 DFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 330 d~~~diip~l~~~~~v~~ 347 (348)
++..|++|.+++++++++
T Consensus 232 ~~~~dil~~l~~~~~v~~ 249 (429)
T PRK02862 232 DFGKEIIPEAIRDYKVQS 249 (429)
T ss_pred hhHHHHHHHHhccCcEEE
Confidence 888999999998887765
No 5
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.4e-35 Score=295.95 Aligned_cols=236 Identities=40% Similarity=0.710 Sum_probs=185.7
Q ss_pred CCCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcc
Q 018939 89 DPKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVN 168 (348)
Q Consensus 89 ~~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~ 168 (348)
.|++|+|||||||.||||+|||..+||||+||+|+||||+|++++|.++|+++|+|+++++.+++.+|+.+.|.+. +.
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~-~~- 79 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLS-GL- 79 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCcc-cc-
Confidence 3678999999999999999999999999999999989999999999999999999999999999999997656321 11
Q ss_pred cCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEE
Q 018939 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCV 248 (348)
Q Consensus 169 ~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~ 248 (348)
....+... ..|.. .+..|++||++|++.+++++.+ ...++|+|++||++++.|+.++++.|.++++++|+++.
T Consensus 80 -~~~~~~~~-~~~~~--~~~~~~lGta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~ 152 (407)
T PRK00844 80 -LGNYITPV-PAQQR--LGKRWYLGSADAIYQSLNLIED---EDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAI 152 (407)
T ss_pred -CCCeEEEC-CcccC--CCCCcccCCHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEE
Confidence 11112111 11211 2345779999999999999863 12367999999999999999999999999999999987
Q ss_pred ecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhC---
Q 018939 249 PMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSY--- 325 (348)
Q Consensus 249 ~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~--- 325 (348)
..+.+....||++.+|++|+|..|.|||..... +.. ....+++++|+|+|++++|..+|+...
T Consensus 153 ~~~~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~--~~~------------~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~ 218 (407)
T PRK00844 153 RVPREEASAFGVIEVDPDGRIRGFLEKPADPPG--LPD------------DPDEALASMGNYVFTTDALVDALRRDAADE 218 (407)
T ss_pred ecchHHcccCCEEEECCCCCEEEEEECCCCccc--ccC------------CCCCcEEEeEEEEEeHHHHHHHHHHhhcCC
Confidence 654334678999999999999999999865321 000 011368999999999999877776421
Q ss_pred CCCcchhhhhHHhccccCCeee
Q 018939 326 PLSNDFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 326 ~~~~d~~~diip~l~~~~~v~~ 347 (348)
....++..|++|.++++.++++
T Consensus 219 ~~~~~~~~dii~~l~~~~~v~~ 240 (407)
T PRK00844 219 DSSHDMGGDIIPRLVERGRAYV 240 (407)
T ss_pred cccccchhhHHHHHhccCeEEE
Confidence 2346788899999999877764
No 6
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=3.9e-35 Score=289.39 Aligned_cols=230 Identities=40% Similarity=0.682 Sum_probs=183.2
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
|++|+|||||||.||||+|||..+||||+||+|+||||+|++++|.++|+++|+|+++++.+++.+|+.+...++ +..
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~--~~~ 78 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWD--LDR 78 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCccc--ccC
Confidence 467999999999999999999999999999999988999999999999999999999999999999885211111 011
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEe
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVP 249 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~ 249 (348)
..+.++++...+.. ..++|++||++|++.+++++.+ ...++|||++||++++.|+.++++.|.+.++++|+++..
T Consensus 79 ~~~~~~i~~~~~~~--~~~~~~~Gta~al~~a~~~l~~---~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~ 153 (380)
T PRK05293 79 INGGVTILPPYSES--EGGKWYKGTAHAIYQNIDYIDQ---YDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIE 153 (380)
T ss_pred CCCCEEEeCCcccC--CCCcccCCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEE
Confidence 01225555322221 2346789999999999998852 124789999999999999999999999999999988876
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhC---C
Q 018939 250 MDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSY---P 326 (348)
Q Consensus 250 ~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~---~ 326 (348)
.+.+++..||++.+|++|+|.+|.|||.... .+.+++|+|+|++++|..+++... .
T Consensus 154 ~~~~~~~~yG~v~~d~~g~V~~~~eKp~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 212 (380)
T PRK05293 154 VPWEEASRFGIMNTDENMRIVEFEEKPKNPK---------------------SNLASMGIYIFNWKRLKEYLIEDEKNPN 212 (380)
T ss_pred cchhhccccCEEEECCCCcEEEEEeCCCCCC---------------------cceeeeEEEEEcHHHHHHHHHHHhhcCC
Confidence 6434477899999998899999999985432 357899999999999987776532 2
Q ss_pred CCcchhhhhHHhcccc-CCeee
Q 018939 327 LSNDFGSEIIPASVKD-HNVQV 347 (348)
Q Consensus 327 ~~~d~~~diip~l~~~-~~v~~ 347 (348)
...+|.+|+++.++++ .+|++
T Consensus 213 ~~~~~~~d~i~~l~~~~~~v~~ 234 (380)
T PRK05293 213 SSHDFGKNVIPLYLEEGEKLYA 234 (380)
T ss_pred chhhhHHHHHHHHhhcCCeEEE
Confidence 3457889999999875 45654
No 7
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.2e-34 Score=290.94 Aligned_cols=237 Identities=41% Similarity=0.720 Sum_probs=189.8
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
+++++|||||||.||||+|||..+||||+||+|+||||+|++++|.++|+++|+|+++++.+++.+|+.+.|++.. ..
T Consensus 13 ~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~-~~- 90 (425)
T PRK00725 13 TRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFR-EE- 90 (425)
T ss_pred hcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhcccc-cC-
Confidence 4679999999999999999999999999999999559999999999999999999999999999999986663211 01
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEe
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVP 249 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~ 249 (348)
....+.++...+.. ..++|++||++|++++++++++ ...++|+|++||++++.|+.++++.|.++++++|+++.+
T Consensus 91 ~~~~i~i~~~~~~~--~~e~~~lGTa~al~~a~~~l~~---~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~ 165 (425)
T PRK00725 91 LGEFVDLLPAQQRV--DEENWYRGTADAVYQNLDIIRR---YDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLE 165 (425)
T ss_pred CCCeEEEeCCcccC--CCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEe
Confidence 11235555544432 1235679999999999999863 235789999999999999999999999999999999877
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhC---C
Q 018939 250 MDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSY---P 326 (348)
Q Consensus 250 ~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~---~ 326 (348)
++.+....||++.+|++++|..|.|||..+.. ++ .....+++++|+|+|++++|..+|++.. .
T Consensus 166 ~~~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~~------------~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~ 231 (425)
T PRK00725 166 VPREEASAFGVMAVDENDRITAFVEKPANPPA--MP------------GDPDKSLASMGIYVFNADYLYELLEEDAEDPN 231 (425)
T ss_pred cchhhcccceEEEECCCCCEEEEEECCCCccc--cc------------cCccceEEEeeEEEEeHHHHHHHHHHhhcCCC
Confidence 65444788999999988999999999864321 00 0011468999999999999887776532 2
Q ss_pred CCcchhhhhHHhccccCCeee
Q 018939 327 LSNDFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 327 ~~~d~~~diip~l~~~~~v~~ 347 (348)
...+|.+|++|.++++.+|++
T Consensus 232 ~~~~~~~dii~~l~~~~~v~~ 252 (425)
T PRK00725 232 SSHDFGKDIIPKIVEEGKVYA 252 (425)
T ss_pred ccchhhHHHHHHHhccCcEEE
Confidence 346888999999999888775
No 8
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=3.5e-34 Score=265.17 Aligned_cols=213 Identities=33% Similarity=0.597 Sum_probs=169.8
Q ss_pred eEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCe-EEEEccCCchhHHHHHHHhccCCCCcccCCC
Q 018939 94 AAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNK-IFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 94 ~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~-IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
++||||||.||||+|+|...||||+|++|+||||+|++++|.++|+++ |+|++++..+.+.+|+...+ .++.
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~------~~~~- 73 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGY------KFGV- 73 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSG------GGTE-
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccc------cccc-
Confidence 699999999999999999999999999999899999999999999999 55556677788888886432 2220
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCC-CceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEecC
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKN-VENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMD 251 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~-~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~~ 251 (348)
.+.++. |.. ..||++||+++...+.+ .. .++|+|++||++++.++.++++.|.++++++++++...+
T Consensus 74 ~i~~i~--~~~-------~~Gta~al~~a~~~i~~---~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~ 141 (248)
T PF00483_consen 74 KIEYIV--QPE-------PLGTAGALLQALDFIEE---EDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVP 141 (248)
T ss_dssp EEEEEE--ESS-------SSCHHHHHHHTHHHHTT---SEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEE
T ss_pred cceeee--ccc-------ccchhHHHHHHHHHhhh---ccccceEEEEeccccccchhhhHHHhhhcccccccccccccc
Confidence 144433 221 25999999999999863 11 245999999999999999999999999985544443333
Q ss_pred CCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHH--hhCCCCc
Q 018939 252 DCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR--SSYPLSN 329 (348)
Q Consensus 252 ~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~--~~~~~~~ 329 (348)
.+..+.||++.+|++|+|++|.|||..+.. ++++++|+|+|++++|..+++ .......
T Consensus 142 ~~~~~~~g~v~~d~~~~V~~~~EKP~~~~~--------------------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~ 201 (248)
T PF00483_consen 142 VEDPSRYGVVEVDEDGRVIRIVEKPDNPNA--------------------SNLINTGIYIFKPEIFDFLLEMIKENARGE 201 (248)
T ss_dssp SSGGGGSEEEEEETTSEEEEEEESCSSHSH--------------------SSEEEEEEEEEETHHHHHHHHHHHTCTTSS
T ss_pred ccccccceeeeeccceeEEEEeccCccccc--------------------ceeccCceEEEcchHHHHHhhhhhccchhh
Confidence 334788999999999999999999986531 368999999999999998865 2234578
Q ss_pred chhhhhHHhccccCCe
Q 018939 330 DFGSEIIPASVKDHNV 345 (348)
Q Consensus 330 d~~~diip~l~~~~~v 345 (348)
++..|+++.++++...
T Consensus 202 ~~l~d~i~~~~~~~~~ 217 (248)
T PF00483_consen 202 DFLTDAIPKLLEQGKK 217 (248)
T ss_dssp HHHHHHHHHHHHTTCE
T ss_pred hHHHHHHHHHHHcCCc
Confidence 8999999999998643
No 9
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=7.4e-33 Score=265.85 Aligned_cols=220 Identities=20% Similarity=0.305 Sum_probs=170.4
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCC-----
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLG----- 164 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~----- 164 (348)
|.+|++||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+...|++.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 4579999999999999999999999999999999 9999999999999999999999999999999996444221
Q ss_pred -----------CCcccCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccc-------
Q 018939 165 -----------NGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYR------- 226 (348)
Q Consensus 165 -----------~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~------- 226 (348)
....++ +++....|.. +.||++|++++.+++. .++|+|++||++++
T Consensus 80 ~~k~~~l~~~~~~~~~~---~~i~~~~q~~-------~lGtg~al~~a~~~l~------~~~fvvi~gD~l~~~~~~~~~ 143 (297)
T PRK10122 80 RVKRQLLAEVQSICPPG---VTIMNVRQGQ-------PLGLGHSILCARPAIG------DNPFVVVLPDVVIDDASADPL 143 (297)
T ss_pred cchhhhHHhhhhccCCC---ceEEEeecCC-------cCchHHHHHHHHHHcC------CCCEEEEECCeeccCcccccc
Confidence 000111 2222223322 3799999999999883 46899999999886
Q ss_pred -cCHHHHHHHHHhcCCcEEEEEEecCCCCCCcceEEEEC----CCC---cEEEEEeCCCCCCCCCcccccccccCCCCCC
Q 018939 227 -MDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKID----RSG---QIIQFAEKPKGPDLKGMQCDTTLLGLSMPDA 298 (348)
Q Consensus 227 -~d~~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~id----~~g---~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~ 298 (348)
.|+.++++.|.+.+++++++....+ ..+.||++.+| ++| +|..|.|||..+..
T Consensus 144 ~~dl~~li~~h~~~~~~~~~~~~~~~--~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~----------------- 204 (297)
T PRK10122 144 RYNLAAMIARFNETGRSQVLAKRMPG--DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred chhHHHHHHHHHHhCCcEEEEEECCC--CCCCceEEEecCcccCCCCeeeEEEEEECCCCccc-----------------
Confidence 4899999999988887554443333 37889999996 356 78999999964321
Q ss_pred CCCCceeEeEEEEEeHHHHHHHHHhhCCC--CcchhhhhHHhccccCCeee
Q 018939 299 VKFPYIASMGVYLFRTDVLLNLLRSSYPL--SNDFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 299 ~~~~~~a~~GiYif~~~vl~~ll~~~~~~--~~d~~~diip~l~~~~~v~~ 347 (348)
..++++++|+|+|++++|..+.+ ..+. ...+.+|+++.++++++|++
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~l~~-~~~~~~~e~~ltd~i~~l~~~~~v~~ 253 (297)
T PRK10122 205 -LDSDLMAVGRYVLSADIWPELER-TEPGAWGRIQLTDAIAELAKKQSVDA 253 (297)
T ss_pred -CCccEEEEEEEEECHHHHHHHHh-CCCCCCCeeeHHHHHHHHHhCCCEEE
Confidence 01367999999999999887644 2232 34566899999999888775
No 10
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=1.1e-32 Score=258.24 Aligned_cols=212 Identities=21% Similarity=0.373 Sum_probs=171.4
Q ss_pred EEEEeCC--CCccCCCCCCCCCccceeeCCcchHHHHHHHHhHh-cCCCeEEEEccCCchhHHHHHHHhccCCCCcccCC
Q 018939 95 AIILGGG--AGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCIN-SGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGD 171 (348)
Q Consensus 95 aIILAgG--~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~-aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~ 171 (348)
+|||||| .||||+|||..+||||+||+|+ |||+|++++|.+ +|+++|+|++++..+++.+|+.... . .++.
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~-~----~~~~ 74 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQ-Q----EFNV 74 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcc-c----ccCc
Confidence 5999999 8999999999999999999999 999999999999 6999999999999999999986321 0 1111
Q ss_pred CcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEecC
Q 018939 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMD 251 (348)
Q Consensus 172 ~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~~ 251 (348)
.+.++. +.. ..||++|++.+..++++ ...++|+|++||++++.|+.++++.|+++++++|+++.+++
T Consensus 75 -~i~~~~--~~~-------~~Gt~~al~~a~~~l~~---~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~ 141 (257)
T cd06428 75 -PIRYLQ--EYK-------PLGTAGGLYHFRDQILA---GNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEAS 141 (257)
T ss_pred -eEEEec--CCc-------cCCcHHHHHHHHHHhhc---cCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEcc
Confidence 133322 211 37999999999988852 13578999999999999999999999999999999998875
Q ss_pred CCCCCcceEEEEC-CCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCC----
Q 018939 252 DCRASDYGLMKID-RSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---- 326 (348)
Q Consensus 252 ~~~~~~~g~v~id-~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~---- 326 (348)
.+....||++.+| ++|+|.+|.|||.... ..++++|+|+|++++|..+ ....+
T Consensus 142 ~~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~---------------------~~~~~~Giyi~~~~~~~~i-~~~~~~~~~ 199 (257)
T cd06428 142 REQASNYGCIVEDPSTGEVLHYVEKPETFV---------------------SDLINCGVYLFSPEIFDTI-KKAFQSRQQ 199 (257)
T ss_pred ccccccccEEEEeCCCCeEEEEEeCCCCcc---------------------cceEEEEEEEECHHHHHHH-hhhcccccc
Confidence 4446789999998 6799999999986432 3679999999999998654 43222
Q ss_pred --------------CCcchhhhhHHhccccCCeee
Q 018939 327 --------------LSNDFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 327 --------------~~~d~~~diip~l~~~~~v~~ 347 (348)
...++..|+++.++++++|++
T Consensus 200 e~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~v~~ 234 (257)
T cd06428 200 EAQLGDDNNREGRAEVIRLEQDVLTPLAGSGKLYV 234 (257)
T ss_pred ccccccccccccccceeeehhhhhhHHhccCCEEE
Confidence 224577899999999888875
No 11
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=1.3e-32 Score=264.17 Aligned_cols=220 Identities=21% Similarity=0.326 Sum_probs=167.6
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccC------
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNL------ 163 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~------ 163 (348)
|.+|+|||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+...|.+
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 4579999999999999999999999999999999 999999999999999999999999999999998643311
Q ss_pred ----------CCCcccCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccc-------
Q 018939 164 ----------GNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYR------- 226 (348)
Q Consensus 164 ----------~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~------- 226 (348)
.++..++ +++....| .+++||++|++++..++. +++|+|++||++++
T Consensus 80 ~~~~~~~~~~~~~~~~~---~~i~~~~q-------~~~lGtg~Av~~a~~~l~------~~~flvv~gD~l~~~~~~~~~ 143 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPG---VTIMNVRQ-------AQPLGLGHSILCARPVVG------DNPFVVVLPDIIIDDATADPL 143 (297)
T ss_pred hcchhhhhhhhhcCCCC---ceEEEeeC-------CCcCchHHHHHHHHHHhC------CCCEEEEECCeeccccccccc
Confidence 0111111 22222222 245899999999998884 47899999999986
Q ss_pred -cCHHHHHHHHHhcCCcEEEEEEecCCCCCCcceEEEE----CCCCc---EEEEEeCCCCCCCCCcccccccccCCCCCC
Q 018939 227 -MDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKI----DRSGQ---IIQFAEKPKGPDLKGMQCDTTLLGLSMPDA 298 (348)
Q Consensus 227 -~d~~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~i----d~~g~---V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~ 298 (348)
.++.++++.|.+.++.+ +++.+..+ ..+.||++.+ |++|+ |.+|.|||..+..
T Consensus 144 ~~~l~~li~~~~~~~~~~-~~~~~~~~-~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~----------------- 204 (297)
T TIGR01105 144 RYNLAAMIARFNETGRSQ-VLAKRMPG-DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQT----------------- 204 (297)
T ss_pred hhHHHHHHHHHHHhCCcE-EEEEEcCC-CCccceEEEecccccCCCCeeeEeEEEECCCCccc-----------------
Confidence 58899999998777766 44444432 2788999998 44564 5899999964321
Q ss_pred CCCCceeEeEEEEEeHHHHHHHHHhhCCC--CcchhhhhHHhccccCCeee
Q 018939 299 VKFPYIASMGVYLFRTDVLLNLLRSSYPL--SNDFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 299 ~~~~~~a~~GiYif~~~vl~~ll~~~~~~--~~d~~~diip~l~~~~~v~~ 347 (348)
..++++++|+|+|++++|.. ++...+. .....+|+++.++++..|++
T Consensus 205 -~~s~~~~~GiYi~~~~i~~~-l~~~~~~~~ge~~ltd~i~~l~~~~~v~~ 253 (297)
T TIGR01105 205 -LDSDLMAVGRYVLSADIWAE-LERTEPGAWGRIQLTDAIAELAKKQSVDA 253 (297)
T ss_pred -CCcCEEEEEEEEECHHHHHH-HhcCCCCCCCeeeHHHHHHHHHhcCCEEE
Confidence 12468999999999999875 4443232 22345799999999888776
No 12
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=2.4e-32 Score=252.05 Aligned_cols=208 Identities=25% Similarity=0.390 Sum_probs=172.3
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
|++||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|++++..+++.+|+. .|. . .++
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~-~~~--~--~~~-- 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLK-EYE--K--KLG-- 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHh-ccc--c--cCC--
Confidence 6899999999999999999999999999999 9999999999999999999999999999999885 331 0 111
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEecCC
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDD 252 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~~~ 252 (348)
++++...+. ...||+++++.++.++.. ..++++|++||++++.++.++++.|.++++++++++.+.++
T Consensus 73 -~~i~~~~~~-------~~~G~~~al~~a~~~~~~----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (233)
T cd06425 73 -IKITFSIET-------EPLGTAGPLALARDLLGD----DDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED 140 (233)
T ss_pred -eEEEeccCC-------CCCccHHHHHHHHHHhcc----CCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC
Confidence 344332221 137999999999988851 24789999999999999999999999999999999998765
Q ss_pred CCCCcceEEEECC-CCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCCCcch
Q 018939 253 CRASDYGLMKIDR-SGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDF 331 (348)
Q Consensus 253 ~~~~~~g~v~id~-~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~~~d~ 331 (348)
.+.||++.+|+ +|+|++|.|||.... .+++++|+|+|++++|..+.. ...++
T Consensus 141 --~~~~g~v~~d~~~~~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~~l~~----~~~~~ 193 (233)
T cd06425 141 --PSKYGVVVHDENTGRIERFVEKPKVFV---------------------GNKINAGIYILNPSVLDRIPL----RPTSI 193 (233)
T ss_pred --ccccCeEEEcCCCCEEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHHhccc----Ccccc
Confidence 56799999998 799999999986432 257899999999999976532 23456
Q ss_pred hhhhHHhccccCCeee
Q 018939 332 GSEIIPASVKDHNVQV 347 (348)
Q Consensus 332 ~~diip~l~~~~~v~~ 347 (348)
..|+++.++++.+|++
T Consensus 194 ~~~~~~~l~~~~~v~~ 209 (233)
T cd06425 194 EKEIFPKMASEGQLYA 209 (233)
T ss_pred hhhhHHHHHhcCCEEE
Confidence 6799999999888875
No 13
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-32 Score=267.56 Aligned_cols=209 Identities=27% Similarity=0.468 Sum_probs=174.2
Q ss_pred CeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCC
Q 018939 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGD 171 (348)
Q Consensus 92 ~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~ 171 (348)
.|+|||||||.||||+|||..+||||+||+|+ |||+|+++.|.++|+++|+|++++..+.+.+++...+ .++.
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~------~~~~ 73 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGE------GLGV 73 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhccc------ccCC
Confidence 38999999999999999999999999999999 9999999999999999999999999999988876422 2221
Q ss_pred CcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEecC
Q 018939 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMD 251 (348)
Q Consensus 172 ~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~~ 251 (348)
.+.++.... ++||+++++.+.+++. .++|++++||++++.|+.+++++|+++.+.+++....+.
T Consensus 74 -~I~y~~e~~---------~lGTag~l~~a~~~l~------~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~ 137 (358)
T COG1208 74 -RITYVVEKE---------PLGTAGALKNALDLLG------GDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL 137 (358)
T ss_pred -ceEEEecCC---------cCccHHHHHHHHHhcC------CCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecC
Confidence 255544322 3799999999998884 389999999999999999999999999888888888877
Q ss_pred CCCCCcceEEEECCC-CcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCCCcc
Q 018939 252 DCRASDYGLMKIDRS-GQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSND 330 (348)
Q Consensus 252 ~~~~~~~g~v~id~~-g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~~~d 330 (348)
+. +.||++..+++ ++|.+|.|||..+.. .++++++|+|+|++++|.. +.. ....+
T Consensus 138 ~~--~~~Gvv~~~~~~~~v~~f~ekp~~~~~-------------------~~~~in~Giyi~~~~v~~~-i~~--~~~~~ 193 (358)
T COG1208 138 DP--SEFGVVETDDGDGRVVEFREKPGPEEP-------------------PSNLINAGIYIFDPEVFDY-IEK--GERFD 193 (358)
T ss_pred CC--CcCceEEecCCCceEEEEEecCCCCCC-------------------CCceEEeEEEEECHHHhhh-ccc--CCccc
Confidence 63 78999999854 699999999954211 2578999999999999983 221 34678
Q ss_pred hhhhhHHhccccCC-eee
Q 018939 331 FGSEIIPASVKDHN-VQV 347 (348)
Q Consensus 331 ~~~diip~l~~~~~-v~~ 347 (348)
|..|++|.++++.. +++
T Consensus 194 ~~~~~~~~l~~~~~~v~~ 211 (358)
T COG1208 194 FEEELLPALAAKGEDVYG 211 (358)
T ss_pred chhhHHHHHHhCCCcEEE
Confidence 88899999999876 765
No 14
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=6.4e-32 Score=258.73 Aligned_cols=208 Identities=25% Similarity=0.432 Sum_probs=165.2
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccC-CchhHHHHHHHhccCCCCcc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQF-NSFSLNRHLARSYNLGNGVN 168 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~-~~~~l~~hl~r~y~~~~g~~ 168 (348)
|+.|++||||||.||||+|+|..+||||+||+|+ |||+|++++|.++|+++|+|++.+ ..+.+.+|+. ++..
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~------~g~~ 73 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG------DGSQ 73 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHc------Cccc
Confidence 4569999999999999999999999999999999 999999999999999999877654 4556666653 3444
Q ss_pred cCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-cccCHHHHHHHHHhcCCcEEEEE
Q 018939 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-YRMDYTEFLQKHIDTKADITVSC 247 (348)
Q Consensus 169 ~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~~~d~~~ll~~h~~~~aditi~~ 247 (348)
|+.. +.+. .|.. +.||++|+..+.+++. .+++++++||++ ++.++.++++.|.+.++++|+++
T Consensus 74 ~g~~-i~y~--~q~~-------~~Gta~Al~~a~~~i~------~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~ 137 (292)
T PRK15480 74 WGLN-LQYK--VQPS-------PDGLAQAFIIGEEFIG------GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFA 137 (292)
T ss_pred cCce-eEEE--ECCC-------CCCHHHHHHHHHHHhC------CCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEE
Confidence 4422 3333 2221 3799999999998884 356888889975 57899999999988888999998
Q ss_pred EecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCC
Q 018939 248 VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL 327 (348)
Q Consensus 248 ~~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~ 327 (348)
+++++ ++.||++.+|++|+|++|.|||..+. ++++++|+|+|+++++.. ++...|.
T Consensus 138 ~~v~~--p~~yGvv~~d~~g~v~~i~EKP~~p~---------------------s~~a~~GiY~~~~~v~~~-~~~~~~~ 193 (292)
T PRK15480 138 YHVND--PERYGVVEFDQNGTAISLEEKPLQPK---------------------SNYAVTGLYFYDNDVVEM-AKNLKPS 193 (292)
T ss_pred EEcCC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEChHHHHH-HhhcCCC
Confidence 88865 67899999999999999999996442 368999999999998875 4432232
Q ss_pred ---CcchhhhhHHhccccCCe
Q 018939 328 ---SNDFGSEIIPASVKDHNV 345 (348)
Q Consensus 328 ---~~d~~~diip~l~~~~~v 345 (348)
...+ +|+++.++++..+
T Consensus 194 ~~ge~~i-td~~~~~l~~g~~ 213 (292)
T PRK15480 194 ARGELEI-TDINRIYMEQGRL 213 (292)
T ss_pred CCCeeEh-HHHHHHHHhcCCe
Confidence 2344 7999988887654
No 15
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=3.4e-32 Score=266.59 Aligned_cols=231 Identities=50% Similarity=0.895 Sum_probs=182.5
Q ss_pred EEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcE
Q 018939 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFV 174 (348)
Q Consensus 95 aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v 174 (348)
|||||||.||||+|||..+||||+||+|+||||+|++++|.++|+++|+|++++..+++.+|+.+.|++.. . -...+
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~-~--~~~~~ 77 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDG-F--IDGFV 77 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccC-c--cCCCE
Confidence 59999999999999999999999999999779999999999999999999999999999999986663211 0 01235
Q ss_pred EEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEecCCCC
Q 018939 175 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCR 254 (348)
Q Consensus 175 ~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~~~~~ 254 (348)
+++...+. ...++|+.||+++++.+++++.+ ...++|+|++||++++.++.++++.|.+.++++++++.+.+.+.
T Consensus 78 ~~~~~~~~--~~~~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~ 152 (361)
T TIGR02091 78 TLLPAQQR--ESGTDWYQGTADAVYQNLDLIED---YDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKE 152 (361)
T ss_pred EEeCCccc--CCCCccccCcHHHHHHHHHHHHh---cCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHh
Confidence 55543332 12345778999999999998853 13478999999999999999999999988888999888775445
Q ss_pred CCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhC---CCCcch
Q 018939 255 ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSY---PLSNDF 331 (348)
Q Consensus 255 ~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~---~~~~d~ 331 (348)
..+||++.+|++|+|.+|.|||....... +. ...+++++|+|+|++++|..+++... ....++
T Consensus 153 ~~~~g~v~~d~~~~v~~~~ekp~~~~~~~--------~~------~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~ 218 (361)
T TIGR02091 153 ASRFGVMQVDEDGRIVDFEEKPANPPSIP--------GM------PDFALASMGIYIFDKDVLKELLEEDADDPESSHDF 218 (361)
T ss_pred cccccEEEECCCCCEEEEEECCCCccccc--------cc------ccccEEeeeEEEEcHHHHHHHHHHHhhcCCccccc
Confidence 77899999998899999999985432100 00 01247999999999999877766432 234577
Q ss_pred hhhhHHhccccCCeee
Q 018939 332 GSEIIPASVKDHNVQV 347 (348)
Q Consensus 332 ~~diip~l~~~~~v~~ 347 (348)
.+|+++.++++.++++
T Consensus 219 ~~d~l~~l~~~~~v~~ 234 (361)
T TIGR02091 219 GKDIIPRALEEGSVQA 234 (361)
T ss_pred HHHHHHHHhhcCceEE
Confidence 7899999998877765
No 16
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.3e-32 Score=252.47 Aligned_cols=205 Identities=27% Similarity=0.464 Sum_probs=173.4
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
|++||||||.||||+|+|...||+|+||.+| |||+|+++.|..+||++|.|+++++......++ +++|..||
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~l-----lGdgs~~g-- 72 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTFKEL-----LGDGSDFG-- 72 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhhhhh-----hcCccccC--
Confidence 7899999999999999999999999999999 999999999999999999999998654332222 57888887
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEecCC
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDD 252 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~~~ 252 (348)
+.+-...|+. +.|-|+|+..+.+++ ++++|+++.||.++..++.++++.+.+.+.+++++..++++
T Consensus 73 -v~itY~~Q~~-------p~GlA~Av~~a~~fv------~~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~d 138 (286)
T COG1209 73 -VDITYAVQPE-------PDGLAHAVLIAEDFV------GDDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVDD 138 (286)
T ss_pred -cceEEEecCC-------CCcHHHHHHHHHhhc------CCCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcCC
Confidence 3444445553 479999999998887 46999999999988779999999999888999999999997
Q ss_pred CCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCC--Ccc
Q 018939 253 CRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL--SND 330 (348)
Q Consensus 253 ~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~--~~d 330 (348)
+++||++.+|++|+|+++.|||+.+. +++|.+|+|+|+++++.. ++.-.|+ .+-
T Consensus 139 --P~rfGV~e~d~~~~v~~l~EKP~~P~---------------------SNlAvtGlY~~d~~Vf~~-~~~ikPS~RGEl 194 (286)
T COG1209 139 --PSRYGVVEFDEDGKVIGLEEKPKEPK---------------------SNLAVTGLYFYDPSVFEA-IKQIKPSARGEL 194 (286)
T ss_pred --cccceEEEEcCCCcEEEeEECCCCCC---------------------CceeEEEEEEeChHHHHH-HHcCCCCCCCce
Confidence 78999999999999999999998775 589999999999999985 5655454 233
Q ss_pred hhhhhHHhccccC
Q 018939 331 FGSEIIPASVKDH 343 (348)
Q Consensus 331 ~~~diip~l~~~~ 343 (348)
=.+|++..+++++
T Consensus 195 EITd~i~~~i~~G 207 (286)
T COG1209 195 EITDAIDLYIEKG 207 (286)
T ss_pred EehHHHHHHHHcC
Confidence 4478888887764
No 17
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=7.7e-32 Score=252.38 Aligned_cols=221 Identities=20% Similarity=0.256 Sum_probs=168.1
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCC-----CCc
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLG-----NGV 167 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~-----~g~ 167 (348)
|++||||||.||||+|||..+||||+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.|.+. .+.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 6799999999999999999999999999999 9999999999999999999999999999999986433111 000
Q ss_pred ccC-------CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCccccc---CHHHHHHHHH
Q 018939 168 NFG-------DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRM---DYTEFLQKHI 237 (348)
Q Consensus 168 ~~~-------~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~---d~~~ll~~h~ 237 (348)
.+. ...+.+....| ++..||++|++.++.++. .++|+|++||+++.. ++.++++.|.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~-------~~~~G~~~al~~~~~~~~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQ-------KEQKGLGHAVLCAEPFVG------DEPFAVILGDDIVVSEEPALKQMIDLYE 146 (260)
T ss_pred HHHHHHhhhccccceEEEEec-------CCCCCHHHHHHHHHHhhC------CCCEEEEeccceecCCcHHHHHHHHHHH
Confidence 000 00011211112 235799999999998773 478999999998753 6999999999
Q ss_pred hcCCcEEEEEEecCCCCCCcceEEEECC----CCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEe
Q 018939 238 DTKADITVSCVPMDDCRASDYGLMKIDR----SGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFR 313 (348)
Q Consensus 238 ~~~aditi~~~~~~~~~~~~~g~v~id~----~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~ 313 (348)
++++++ +++...+.+..++||++.+|+ +|+|+.|.|||..... ...++++|+|+|+
T Consensus 147 ~~~~~i-i~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi~~ 206 (260)
T TIGR01099 147 KYGCSI-IAVEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEA-------------------PSNLAIVGRYVLT 206 (260)
T ss_pred HhCCCE-EEEEECChhhcccCceEEeccccCCceeEEEEEECCCCCCC-------------------CCceEEEEEEECC
Confidence 888886 555555544478899999972 3799999999953321 1357899999999
Q ss_pred HHHHHHHHHhhCC-CCcchhhhhHHhccccCCeee
Q 018939 314 TDVLLNLLRSSYP-LSNDFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 314 ~~vl~~ll~~~~~-~~~d~~~diip~l~~~~~v~~ 347 (348)
+++|..+...... ......+|+++.++++++|++
T Consensus 207 ~~~~~~l~~~~~~~~~~~~l~d~i~~l~~~~~v~~ 241 (260)
T TIGR01099 207 PDIFDLLEETPPGAGGEIQLTDALRKLLEKETVYA 241 (260)
T ss_pred HHHHHHHHhCCCCCCCceeHHHHHHHHHhcCCEEE
Confidence 9998876543221 123455799999999888875
No 18
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=100.00 E-value=3.3e-31 Score=239.77 Aligned_cols=206 Identities=30% Similarity=0.534 Sum_probs=171.3
Q ss_pred EEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcE
Q 018939 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFV 174 (348)
Q Consensus 95 aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v 174 (348)
|||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+|+.+.+ .++. .+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~------~~~~-~i 72 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGS------KFGV-NI 72 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChh------hcCc-eE
Confidence 69999999999999999999999999999 9999999999999999999999998888888875321 1121 13
Q ss_pred EEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEecCCCC
Q 018939 175 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCR 254 (348)
Q Consensus 175 ~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~~~~~ 254 (348)
.++. +. ...|++++++.++..+ ..++|+|++||++++.++.++++.|.++++++++++.+.++
T Consensus 73 ~~~~--~~-------~~~g~~~al~~~~~~~------~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 135 (217)
T cd04181 73 EYVV--QE-------EPLGTAGAVRNAEDFL------GDDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVED-- 135 (217)
T ss_pred EEEe--CC-------CCCccHHHHHHhhhhc------CCCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcCC--
Confidence 3332 21 1269999999998776 25899999999999999999999999999999999988763
Q ss_pred CCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCCCcchhhh
Q 018939 255 ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSE 334 (348)
Q Consensus 255 ~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~~~d~~~d 334 (348)
...||++.+|++|+|.+|.|||.... ..++++|+|+|++++|. +++.......++.+|
T Consensus 136 ~~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~ 193 (217)
T cd04181 136 PSRYGVVELDDDGRVTRFVEKPTLPE---------------------SNLANAGIYIFEPEILD-YIPEILPRGEDELTD 193 (217)
T ss_pred CCcceEEEEcCCCcEEEEEECCCCCC---------------------CCEEEEEEEEECHHHHH-hhhhcCCcccccHHH
Confidence 67899999999899999999986542 25789999999999985 455432245688899
Q ss_pred hHHhccccCCeee
Q 018939 335 IIPASVKDHNVQV 347 (348)
Q Consensus 335 iip~l~~~~~v~~ 347 (348)
+++.++++.+|++
T Consensus 194 ~~~~l~~~~~v~~ 206 (217)
T cd04181 194 AIPLLIEEGKVYG 206 (217)
T ss_pred HHHHHHhcCCEEE
Confidence 9999999888875
No 19
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.98 E-value=4.9e-31 Score=244.35 Aligned_cols=207 Identities=25% Similarity=0.417 Sum_probs=163.8
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCC-chhHHHHHHHhccCCCCcccCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFN-SFSLNRHLARSYNLGNGVNFGD 171 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~-~~~l~~hl~r~y~~~~g~~~~~ 171 (348)
|++||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++. .+++.+|+.. +..|+
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~------~~~~~- 72 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD------GSDLG- 72 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhc------ccccC-
Confidence 6899999999999999999999999999998 9999999999999999999988765 4677777742 22232
Q ss_pred CcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCccc-ccCHHHHHHHHHhcCCcEEEEEEec
Q 018939 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLY-RMDYTEFLQKHIDTKADITVSCVPM 250 (348)
Q Consensus 172 ~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~-~~d~~~ll~~h~~~~aditi~~~~~ 250 (348)
+.+....+. ...||++|++.+..+++ .++++|++||+++ +.++.++++.|.++++++++++.+.
T Consensus 73 --~~i~~~~~~-------~~~G~~~al~~a~~~~~------~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
T cd02538 73 --IRITYAVQP-------KPGGLAQAFIIGEEFIG------DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEV 137 (240)
T ss_pred --ceEEEeeCC-------CCCCHHHHHHHHHHhcC------CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 233222222 13799999999998873 4789999999854 6679999999998899999999887
Q ss_pred CCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCC--C
Q 018939 251 DDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL--S 328 (348)
Q Consensus 251 ~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~--~ 328 (348)
++ .+.||++.+|++|+|.+|.|||.... ..++++|+|+|++++|. +++...+. .
T Consensus 138 ~~--~~~~g~v~~d~~g~v~~~~ekp~~~~---------------------~~~~~~Giyi~~~~~l~-~l~~~~~~~~~ 193 (240)
T cd02538 138 ND--PERYGVVEFDENGRVLSIEEKPKKPK---------------------SNYAVTGLYFYDNDVFE-IAKQLKPSARG 193 (240)
T ss_pred Cc--hhcCceEEecCCCcEEEEEECCCCCC---------------------CCeEEEEEEEECHHHHH-HHHhcCCCCCC
Confidence 65 56799999999999999999986432 25789999999999885 55543222 2
Q ss_pred cchhhhhHHhccccCCee
Q 018939 329 NDFGSEIIPASVKDHNVQ 346 (348)
Q Consensus 329 ~d~~~diip~l~~~~~v~ 346 (348)
....+|+++.+++++.+.
T Consensus 194 ~~~l~d~~~~l~~~g~~~ 211 (240)
T cd02538 194 ELEITDVNNEYLEKGKLS 211 (240)
T ss_pred eEEhHHHHHHHHHhCCeE
Confidence 334469999998876543
No 20
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.98 E-value=7e-31 Score=246.48 Aligned_cols=216 Identities=22% Similarity=0.318 Sum_probs=164.7
Q ss_pred eEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc--CC
Q 018939 94 AAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF--GD 171 (348)
Q Consensus 94 ~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~--~~ 171 (348)
++||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+.+.+|+.+....+.+..+ ..
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 489999999999999999999999999999 899999999999999999999999999999998632101111111 00
Q ss_pred CcEEEEecccCCC---cCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEE
Q 018939 172 GFVEVLAATQTPG---EAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCV 248 (348)
Q Consensus 172 ~~v~vl~~~q~~~---~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~ 248 (348)
+..++......+. ...+..+.||++|++.+..++. .++|+|++||++++.|+.++++.|.+.++++|+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~------~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~ 153 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLD------DEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAV 153 (254)
T ss_pred cccccccccCCccceeeeecCCcCCcHHHHHHHHHhcC------CCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEe
Confidence 0011100000000 0000113799999999988773 479999999999999999999999999999998765
Q ss_pred ecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCCC
Q 018939 249 PMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLS 328 (348)
Q Consensus 249 ~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~~ 328 (348)
+ + ...||++.+|+ ++|.+|.|||... ..++++|+|+|++++|. ++++ ..
T Consensus 154 ~--~--~~~yG~v~~d~-~~V~~~~Ekp~~~----------------------~~~i~~Giyi~~~~il~-~l~~---~~ 202 (254)
T TIGR02623 154 Q--P--PGRFGALDLEG-EQVTSFQEKPLGD----------------------GGWINGGFFVLNPSVLD-LIDG---DA 202 (254)
T ss_pred c--C--CCcccEEEECC-CeEEEEEeCCCCC----------------------CCeEEEEEEEEcHHHHh-hccc---cC
Confidence 3 2 46799999985 6999999998532 25789999999999985 5543 23
Q ss_pred cchhhhhHHhccccCCeee
Q 018939 329 NDFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 329 ~d~~~diip~l~~~~~v~~ 347 (348)
.++.+|+++.++++..|++
T Consensus 203 ~~~~~d~i~~l~~~~~v~~ 221 (254)
T TIGR02623 203 TVWEQEPLETLAQRGELSA 221 (254)
T ss_pred chhhhhHHHHHHhCCCEEE
Confidence 4688899999999887765
No 21
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.98 E-value=2e-31 Score=262.20 Aligned_cols=225 Identities=25% Similarity=0.383 Sum_probs=167.8
Q ss_pred CeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCch-hHHHHHHHhccCCCCcccC
Q 018939 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSF-SLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 92 ~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~-~l~~hl~r~y~~~~g~~~~ 170 (348)
.|++||||||.||||+|||..+||||+||+|+||||+|++++|.++|+++|+|++++..+ ++.+|+.+...++-.....
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~~ 81 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKRD 81 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCcccccC
Confidence 589999999999999999999999999999998899999999999999999999999987 8999986311111111100
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEec
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPM 250 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~ 250 (348)
+.+.++ .|.. ..+..|++++++.++++++. ...++|+|++||++++.|+.+++++|.++++++|+++.++
T Consensus 82 -~~~~~~--~~e~----~~l~tg~~~a~~~a~~~l~~---~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v 151 (369)
T TIGR02092 82 -GLFVFP--YNDR----DDLSEGGKRYFSQNLEFLKR---STSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKV 151 (369)
T ss_pred -cEEEEe--ccCC----CCcccChHHHHHHHHHHHHh---CCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEec
Confidence 111111 1221 11224777889889888742 1347999999999999999999999999999999999887
Q ss_pred CCCCCCcc-eEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCC-C
Q 018939 251 DDCRASDY-GLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL-S 328 (348)
Q Consensus 251 ~~~~~~~~-g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~-~ 328 (348)
++..+..| +++..|++|+|..|.+++.... +..+++|+|+|++++|..+++...+. .
T Consensus 152 ~~~~~~~~g~vv~~~~~g~v~~~~~~~~~~~---------------------~~~~~~Giyi~~~~~l~~~l~~~~~~~~ 210 (369)
T TIGR02092 152 KPADASEYDTILRFDESGKVKSIGQNLNPEE---------------------EENISLDIYIVSTDLLIELLYECIQRGK 210 (369)
T ss_pred CHHHccccCcEEEEcCCCCEEeccccCCCCC---------------------cceeeeeEEEEEHHHHHHHHHHHhhcCc
Confidence 63335667 4566777788888754332211 24578999999999887777644332 3
Q ss_pred cchhhhhHHhccccCCeee
Q 018939 329 NDFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 329 ~d~~~diip~l~~~~~v~~ 347 (348)
.++..++++.++++.+|++
T Consensus 211 ~~~~~d~i~~~~~~~~v~~ 229 (369)
T TIGR02092 211 LTSLEELIRENLKELNINA 229 (369)
T ss_pred cccHHHHHHHHhccCcEEE
Confidence 3566799999887777764
No 22
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.98 E-value=6.4e-31 Score=251.18 Aligned_cols=204 Identities=25% Similarity=0.426 Sum_probs=162.8
Q ss_pred eEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEcc-CCchhHHHHHHHhccCCCCcccCCC
Q 018939 94 AAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQ-FNSFSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 94 ~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~-~~~~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
++||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++ +..+.+.+|+. ++..|+
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg------~g~~~g-- 71 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLG------DGSQWG-- 71 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhc------cccccC--
Confidence 589999999999999999999999999999 99999999999999999998875 55556666553 344444
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-cccCHHHHHHHHHhcCCcEEEEEEecC
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-YRMDYTEFLQKHIDTKADITVSCVPMD 251 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~~~d~~~ll~~h~~~~aditi~~~~~~ 251 (348)
+++....|.. +.||++|++.+..++. .+++++++||++ ++.++.++++.|.+.++++|+++.+++
T Consensus 72 -~~i~~~~q~~-------~~Gta~al~~a~~~l~------~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~ 137 (286)
T TIGR01207 72 -VNLSYAVQPS-------PDGLAQAFIIGEDFIG------GDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS 137 (286)
T ss_pred -ceEEEEEccC-------CCCHHHHHHHHHHHhC------CCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc
Confidence 2333333322 3799999999999884 367888899975 578999999999988889999999887
Q ss_pred CCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCC--Cc
Q 018939 252 DCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL--SN 329 (348)
Q Consensus 252 ~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~--~~ 329 (348)
+ ++.||++.+|++|+|++|.|||..+. ++++++|+|+|+++++.. ++...|. ..
T Consensus 138 ~--p~~yGvv~~d~~g~V~~i~EKp~~~~---------------------s~~~~~GiYi~~~~i~~~-l~~~~~~~~ge 193 (286)
T TIGR01207 138 D--PERYGVVEFDSNGRAISIEEKPAQPK---------------------SNYAVTGLYFYDNRVVEI-ARQLKPSARGE 193 (286)
T ss_pred C--HHHCceEEECCCCeEEEEEECCCCCC---------------------CCEEEEEEEEEchHHHHH-HhhcCCCCCCc
Confidence 5 67899999999999999999996432 367999999999998764 5543332 22
Q ss_pred chhhhhHHhccccCC
Q 018939 330 DFGSEIIPASVKDHN 344 (348)
Q Consensus 330 d~~~diip~l~~~~~ 344 (348)
-..+|+++.++++..
T Consensus 194 ~eitdv~~~~l~~g~ 208 (286)
T TIGR01207 194 LEITDLNRVYLEEGR 208 (286)
T ss_pred EeHHHHHHHHHHcCC
Confidence 345799999888754
No 23
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=99.98 E-value=7.7e-31 Score=246.74 Aligned_cols=219 Identities=22% Similarity=0.274 Sum_probs=167.0
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCC-----CCc
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLG-----NGV 167 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~-----~g~ 167 (348)
|++||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++++++++.+|+.+.|.+. .+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 6899999999999999999999999999999 9999999999999999999999999999999996433211 000
Q ss_pred cc--------C-CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCccccc---CHHHHHHH
Q 018939 168 NF--------G-DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRM---DYTEFLQK 235 (348)
Q Consensus 168 ~~--------~-~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~---d~~~ll~~ 235 (348)
.+ . ...+.++. + .+..||++|++.++.+++ .++|+|++||+++.. ++.++++.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~--~-------~~~~Gt~~al~~~~~~i~------~~~~lv~~gD~~~~~~~~~~~~l~~~ 144 (267)
T cd02541 80 TDLLEEVRIISDLANIHYVR--Q-------KEPLGLGHAVLCAKPFIG------DEPFAVLLGDDLIDSKEPCLKQLIEA 144 (267)
T ss_pred HHHhhhhhcccCCceEEEEE--c-------CCCCChHHHHHHHHHHhC------CCceEEEECCeEEeCCchHHHHHHHH
Confidence 00 0 00122221 2 234799999999998874 378999999998764 49999999
Q ss_pred HHhcCCcEEEEEEecCCCCCCcceEEEECC----CCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEE
Q 018939 236 HIDTKADITVSCVPMDDCRASDYGLMKIDR----SGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYL 311 (348)
Q Consensus 236 h~~~~aditi~~~~~~~~~~~~~g~v~id~----~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYi 311 (348)
|.+.++++ +++.+...+....||++.+|+ .++|.+|.|||..... ..+++++|+|+
T Consensus 145 ~~~~~~~~-~~~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~-------------------~~~~~~~Giyi 204 (267)
T cd02541 145 YEKTGASV-IAVEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEA-------------------PSNLAIVGRYV 204 (267)
T ss_pred HHHhCCCE-EEEEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCC-------------------CCceEEEEEEE
Confidence 98877764 555565544467899999986 2589999999864321 13678999999
Q ss_pred EeHHHHHHHHHhhC-CCCcchhhhhHHhccccCCeee
Q 018939 312 FRTDVLLNLLRSSY-PLSNDFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 312 f~~~vl~~ll~~~~-~~~~d~~~diip~l~~~~~v~~ 347 (348)
|++++|..+.+... ........++++.++++++|++
T Consensus 205 ~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~~v~~ 241 (267)
T cd02541 205 LTPDIFDILENTKPGKGGEIQLTDAIAKLLEEEPVYA 241 (267)
T ss_pred cCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcCCEEE
Confidence 99999977643211 1223456799999999888875
No 24
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.97 E-value=9.7e-31 Score=239.09 Aligned_cols=200 Identities=21% Similarity=0.321 Sum_probs=163.5
Q ss_pred eEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCc
Q 018939 94 AAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGF 173 (348)
Q Consensus 94 ~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~ 173 (348)
++||||||.|+||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+...+ ++
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~-------~~--- 69 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDSR-------FG--- 69 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhccc-------CC---
Confidence 489999999999999999999999999999 9999999999999999999999999999999886311 12
Q ss_pred EEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHH--hcCCcEEEEEEecC
Q 018939 174 VEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHI--DTKADITVSCVPMD 251 (348)
Q Consensus 174 v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~--~~~aditi~~~~~~ 251 (348)
+.+....+. .+..||+++++.++.++. .++|+|++||++++.++.++++.|. ..++++++...+.+
T Consensus 70 ~~i~~~~~~------~~~~g~~~~l~~~~~~~~------~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (221)
T cd06422 70 LRITISDEP------DELLETGGGIKKALPLLG------DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP 137 (221)
T ss_pred ceEEEecCC------CcccccHHHHHHHHHhcC------CCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC
Confidence 233222221 024799999999998873 3799999999999999999999998 46677777766654
Q ss_pred CCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCCCcch
Q 018939 252 DCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDF 331 (348)
Q Consensus 252 ~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~~~d~ 331 (348)
+ ...||.+.+|++|+|.++.|||.. +++++|+|+|++++|..+.+. ...
T Consensus 138 ~--~~~~g~v~~d~~~~v~~~~~~~~~------------------------~~~~~Giyi~~~~~l~~l~~~-----~~~ 186 (221)
T cd06422 138 G--HNGVGDFSLDADGRLRRGGGGAVA------------------------PFTFTGIQILSPELFAGIPPG-----KFS 186 (221)
T ss_pred C--CCCcceEEECCCCcEeecccCCCC------------------------ceEEEEEEEEcHHHHhhCCcC-----ccc
Confidence 3 567899999999999999988742 468999999999999876432 234
Q ss_pred hhhhHHhccccCCeee
Q 018939 332 GSEIIPASVKDHNVQV 347 (348)
Q Consensus 332 ~~diip~l~~~~~v~~ 347 (348)
.+|+++.++++.++++
T Consensus 187 ~~d~~~~l~~~~~~~~ 202 (221)
T cd06422 187 LNPLWDRAIAAGRLFG 202 (221)
T ss_pred HHHHHHHHHHcCCeEE
Confidence 5799999998877654
No 25
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.97 E-value=9.8e-31 Score=239.36 Aligned_cols=207 Identities=17% Similarity=0.221 Sum_probs=159.4
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
++|||||||.|+||+|||..+||||+||+|+ |||+|++++|.++|+++|+|+++++.+++.+|+.+.+.++. .+...
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~--~~~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKP--KSSLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhcccccc--ccCcc
Confidence 4799999999999999999999999999999 99999999999999999999999999999999975321111 11011
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHh-----cCCcEEEEE
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHID-----TKADITVSC 247 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~-----~~aditi~~ 247 (348)
.+.++. +. ...|++++++..... . ...++|+|++||++++.|+.++++.|++ .++++|+++
T Consensus 78 ~i~~~~--~~-------~~~~~~~al~~~~~~-~----~~~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~ 143 (217)
T cd04197 78 IVIIIM--SE-------DCRSLGDALRDLDAK-G----LIRGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVL 143 (217)
T ss_pred eEEEEe--CC-------CcCccchHHHHHhhc-c----ccCCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEE
Confidence 234332 21 136788888754321 0 1247899999999999999999999987 489999998
Q ss_pred EecCCCC----CCcceEEEECCC-CcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHH
Q 018939 248 VPMDDCR----ASDYGLMKIDRS-GQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVL 317 (348)
Q Consensus 248 ~~~~~~~----~~~~g~v~id~~-g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl 317 (348)
.+.+++. ..+++++.+|++ ++|..|.|||..+.....++.+.+++-++... ...++.++|+|+|++++|
T Consensus 144 ~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~-i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 144 KEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVE-IRHDLLDCHIDICSPDVL 217 (217)
T ss_pred EeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEE-EECCceecCEEEeCCCCC
Confidence 8876543 224788888876 89999999998765444456666666555432 346889999999999875
No 26
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.97 E-value=7.5e-30 Score=238.73 Aligned_cols=217 Identities=20% Similarity=0.316 Sum_probs=166.8
Q ss_pred EEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc--CCC
Q 018939 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF--GDG 172 (348)
Q Consensus 95 aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~--~~~ 172 (348)
+||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+.+.++..+.+ ..+
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 59999999999999999999999999999 899999999999999999999999999999998653211111111 111
Q ss_pred cEEEEecccCC-C--cCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEe
Q 018939 173 FVEVLAATQTP-G--EAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVP 249 (348)
Q Consensus 173 ~v~vl~~~q~~-~--~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~ 249 (348)
.+.++...... . ...+.-..||++|+++++.++. ..++|+|++||++++.++.++++.|...++++|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~-----~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~ 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLG-----DDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcC-----CCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec
Confidence 12222210000 0 0000012679999999998873 23799999999999999999999999999999987763
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCCCc
Q 018939 250 MDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN 329 (348)
Q Consensus 250 ~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~~~ 329 (348)
....||.+.+|++|+|.++.|||..+ +.++++|+|+|++++|..+ +.. ..
T Consensus 155 ----~~~~~g~v~~d~~g~V~~~~ekp~~~----------------------~~~i~~Giyi~~~~l~~~l-~~~---~~ 204 (253)
T cd02524 155 ----PPGRFGELDLDDDGQVTSFTEKPQGD----------------------GGWINGGFFVLEPEVFDYI-DGD---DT 204 (253)
T ss_pred ----CCCcccEEEECCCCCEEEEEECCCCC----------------------CceEEEEEEEECHHHHHhh-ccc---cc
Confidence 24679999999999999999998643 1468999999999998654 331 45
Q ss_pred chhhhhHHhccccCCeee
Q 018939 330 DFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 330 d~~~diip~l~~~~~v~~ 347 (348)
++.+|+++.++++.++++
T Consensus 205 ~~~~d~l~~li~~~~v~~ 222 (253)
T cd02524 205 VFEREPLERLAKDGELMA 222 (253)
T ss_pred hhhHHHHHHHHhcCCEEE
Confidence 677899999999877764
No 27
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.97 E-value=1.4e-29 Score=243.59 Aligned_cols=220 Identities=24% Similarity=0.346 Sum_probs=168.6
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcc--
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVN-- 168 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~-- 168 (348)
+-|++||||||.|+||+|+|..+||||+||+|+ |+|+|+++++.++|+++|+|++++..+++.+|+...+.+++.++
T Consensus 7 ~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~ 85 (302)
T PRK13389 7 KVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKR 85 (302)
T ss_pred cceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhhhhhhhh
Confidence 348899999999999999999999999999999 99999999999999999999999999999999863221210000
Q ss_pred ----cCC-------CcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccc--------cCH
Q 018939 169 ----FGD-------GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYR--------MDY 229 (348)
Q Consensus 169 ----~~~-------~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~--------~d~ 229 (348)
+.. ....+....| ....||++|++++..++. +++|+|++||++++ .++
T Consensus 86 ~~~~~~~e~~~i~~~~~~i~~~~q-------~~~~Gtg~Av~~a~~~~~------~~~~lVl~gD~~~~~~~~~~~~~dl 152 (302)
T PRK13389 86 VKRQLLDEVQSICPPHVTIMQVRQ-------GLAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLSQDNL 152 (302)
T ss_pred hhhHHHHhhhhccccCceEEEeec-------CCCCChHHHHHHHHHHcC------CCCEEEEeCcceecccccccccccH
Confidence 000 0012222222 224799999999988763 47899999999874 689
Q ss_pred HHHHHHHHhcCCcEEEEEEecCCCCCCcceEEEECC-------CCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCC
Q 018939 230 TEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDR-------SGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFP 302 (348)
Q Consensus 230 ~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~id~-------~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (348)
.++++.|.+.+++ ++++.++++ ...||++.+|+ +++|.+|.|||..... .+
T Consensus 153 ~~l~~~h~~~~~~-tl~~~~~~~--~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~-------------------~s 210 (302)
T PRK13389 153 AEMIRRFDETGHS-QIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA-------------------PS 210 (302)
T ss_pred HHHHHHHHhcCCC-EEEEEEccc--CCcceEEEecCcccccCCcceEEEEEECCCCCCC-------------------Cc
Confidence 9999999888876 677777754 67899998863 3589999999974321 13
Q ss_pred ceeEeEEEEEeHHHHHHHHHhhCC--CCcchhhhhHHhccccCCeee
Q 018939 303 YIASMGVYLFRTDVLLNLLRSSYP--LSNDFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 303 ~~a~~GiYif~~~vl~~ll~~~~~--~~~d~~~diip~l~~~~~v~~ 347 (348)
+++++|+|+|++++|. +++...+ ....+.+|+++.++++.+|++
T Consensus 211 ~~~~~GiYi~~~~il~-~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~ 256 (302)
T PRK13389 211 NLAIVGRYVLSADIWP-LLAKTPPGAGDEIQLTDAIDMLIEKETVEA 256 (302)
T ss_pred cEEEEEEEEECHHHHH-HHHhCCCCCCCeeeHHHHHHHHHHcCCEEE
Confidence 5799999999999985 5654332 234567899999999887765
No 28
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.97 E-value=2e-29 Score=228.65 Aligned_cols=203 Identities=26% Similarity=0.445 Sum_probs=165.4
Q ss_pred EEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcE
Q 018939 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFV 174 (348)
Q Consensus 95 aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v 174 (348)
|||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+.+.+|+.+.+ .++. .+
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~------~~~~-~~ 72 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGY------RGGI-RI 72 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcc------ccCc-eE
Confidence 69999999999999999999999999999 9999999999999999999999999888888885322 1121 12
Q ss_pred EEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEecCCCC
Q 018939 175 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCR 254 (348)
Q Consensus 175 ~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~~~~~ 254 (348)
.+.. .+. ..|++++++.++..+. .++++|++||++++.++.++++.|.+.+.++++++.+..+
T Consensus 73 ~~~~-~~~--------~~G~~~~l~~a~~~~~------~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-- 135 (223)
T cd06915 73 YYVI-EPE--------PLGTGGAIKNALPKLP------EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD-- 135 (223)
T ss_pred EEEE-CCC--------CCcchHHHHHHHhhcC------CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--
Confidence 2222 111 3799999999987762 5899999999999989999999998888999998888754
Q ss_pred CCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCCCcchhhh
Q 018939 255 ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSE 334 (348)
Q Consensus 255 ~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~~~d~~~d 334 (348)
...|+.+.+|++|+|..|.|||.... .+++++|+|+|++++|..+... ..++.+|
T Consensus 136 ~~~~~~v~~d~~~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~ 190 (223)
T cd06915 136 ASRYGNVTVDGDGRVIAFVEKGPGAA---------------------PGLINGGVYLLRKEILAEIPAD----AFSLEAD 190 (223)
T ss_pred CCcceeEEECCCCeEEEEEeCCCCCC---------------------CCcEEEEEEEECHHHHhhCCcc----CCChHHH
Confidence 46799999998899999999876431 3678999999999999765322 3456789
Q ss_pred hHHhccccCCeee
Q 018939 335 IIPASVKDHNVQV 347 (348)
Q Consensus 335 iip~l~~~~~v~~ 347 (348)
+++.+++.++|++
T Consensus 191 ~~~~l~~~~~v~~ 203 (223)
T cd06915 191 VLPALVKRGRLYG 203 (223)
T ss_pred HHHHHHhcCcEEE
Confidence 9999987767764
No 29
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.97 E-value=1.5e-28 Score=226.34 Aligned_cols=206 Identities=25% Similarity=0.397 Sum_probs=164.3
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
|++||||||.|+||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++..+.+.+|+.+.+ .|+.
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~------~~~~- 72 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGS------RFGV- 72 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchh------hcCC-
Confidence 6899999999999999999999999999999 9999999999999999999999998888888875322 2221
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEecCC
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDD 252 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~~~ 252 (348)
.+.++. +. +..||+++++.++.++. .++++|++||++++.++.++++.|.+.++++++++.+.++
T Consensus 73 ~i~~~~--~~-------~~~g~~~sl~~a~~~i~------~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (236)
T cd04189 73 RITYIL--QE-------EPLGLAHAVLAARDFLG------DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED 137 (236)
T ss_pred eEEEEE--CC-------CCCChHHHHHHHHHhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC
Confidence 133332 21 23699999999998773 4689999999999999999999999999999999988765
Q ss_pred CCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCC--Ccc
Q 018939 253 CRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL--SND 330 (348)
Q Consensus 253 ~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~--~~d 330 (348)
...||++.+|+ ++|.++.|||.... ..++++|+|+|++++|..+ ....+. ...
T Consensus 138 --~~~~g~~~~d~-~~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~ 192 (236)
T cd04189 138 --PRRFGVAVVDD-GRIVRLVEKPKEPP---------------------SNLALVGVYAFTPAIFDAI-SRLKPSWRGEL 192 (236)
T ss_pred --cccceEEEEcC-CeEEEEEECCCCCC---------------------CCEEEEEEEEeCHHHHHHH-HhcCCCCCCeE
Confidence 46689888875 59999999985432 2578999999999999765 332222 123
Q ss_pred hhhhhHHhcccc-CCee
Q 018939 331 FGSEIIPASVKD-HNVQ 346 (348)
Q Consensus 331 ~~~diip~l~~~-~~v~ 346 (348)
..+|+++.++++ .+|+
T Consensus 193 ~~~d~~~~~i~~g~~v~ 209 (236)
T cd04189 193 EITDAIQWLIDRGRRVG 209 (236)
T ss_pred EHHHHHHHHHHcCCcEE
Confidence 346899988865 3454
No 30
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.97 E-value=1.1e-28 Score=241.27 Aligned_cols=207 Identities=22% Similarity=0.370 Sum_probs=166.5
Q ss_pred eEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccC-CchhHHHHHHHhccCCCCcccCCC
Q 018939 94 AAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQF-NSFSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 94 ~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~-~~~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
++||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|++++ ..+++.+|+.. +..|+..
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~------~~~~~~~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGE------GERFGAK 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhc------ccccCce
Confidence 589999999999999999999999999999 999999999999999999999999 88889888853 1223311
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEecCC
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDD 252 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~~~ 252 (348)
+.++. +. +..||+++++.++.+++ .++++|++||++++.++.++++.|.++++++++++.+.++
T Consensus 74 -~~~~~--~~-------~~~G~~~al~~a~~~l~------~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~ 137 (353)
T TIGR01208 74 -ITYIV--QG-------EPLGLAHAVYTARDFLG------DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD 137 (353)
T ss_pred -EEEEE--CC-------CCCCHHHHHHHHHHhcC------CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC
Confidence 23332 21 24799999999998874 3689999999999999999999999999999999988765
Q ss_pred CCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCC--Ccc
Q 018939 253 CRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL--SND 330 (348)
Q Consensus 253 ~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~--~~d 330 (348)
+..||++.+|++++|.+|.|||.... ...+++|+|+|++.++.. +++..+. ...
T Consensus 138 --~~~~g~~~~~~~~~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~l~~~-l~~~~~~~~~e~ 193 (353)
T TIGR01208 138 --PTAFGVAVLEDGKRILKLVEKPKEPP---------------------SNLAVVGLYMFRPLIFEA-IKNIKPSWRGEL 193 (353)
T ss_pred --hhhCeEEEEcCCCcEEEEEECCCCCC---------------------ccceEEEEEEECHHHHHH-HHhcCCCCCCcE
Confidence 56799988877789999999986442 257899999999976654 5543331 233
Q ss_pred hhhhhHHhcccc-CCeee
Q 018939 331 FGSEIIPASVKD-HNVQV 347 (348)
Q Consensus 331 ~~~diip~l~~~-~~v~~ 347 (348)
...|+++.++++ .+|++
T Consensus 194 ~l~d~l~~l~~~g~~v~~ 211 (353)
T TIGR01208 194 EITDAIQWLIEKGYKVGG 211 (353)
T ss_pred EHHHHHHHHHHcCCeEEE
Confidence 357999999876 45654
No 31
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=1.5e-28 Score=228.29 Aligned_cols=222 Identities=22% Similarity=0.294 Sum_probs=180.9
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc-
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF- 169 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~- 169 (348)
+-.+|||+|||.||||.|.|+..||-|+||.++ |+|+|+++.+..+||++|++||+.+...|.+|+...|.+.+...-
T Consensus 3 ~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~ 81 (291)
T COG1210 3 KIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEKR 81 (291)
T ss_pred cccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHHh
Confidence 457899999999999999999999999999999 999999999999999999999999999999999766543311110
Q ss_pred C-----------CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCccccc---CHHHHHHH
Q 018939 170 G-----------DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRM---DYTEFLQK 235 (348)
Q Consensus 170 ~-----------~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~---d~~~ll~~ 235 (348)
+ ...+.+....|. .++|.++||++|..++ ++|+|.|+.+|.++.. .+.+|++.
T Consensus 82 ~K~~~L~~v~~i~~~~~i~~vRQ~-------e~~GLGhAVl~A~~~v------g~EpFaVlL~Ddl~~~~~~~l~qmi~~ 148 (291)
T COG1210 82 GKRELLEEVRSIPPLVTISFVRQK-------EPLGLGHAVLCAKPFV------GDEPFAVLLPDDLVDSEKPCLKQMIEL 148 (291)
T ss_pred CHHHHHHHHHhcccCceEEEEecC-------CCCcchhHHHhhhhhc------CCCceEEEeCCeeecCCchHHHHHHHH
Confidence 0 112334443443 3589999999999888 5799999999998763 37889999
Q ss_pred HHhcCCcEEEEEEecCCCCCCcceEEE----ECCC-CcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEE
Q 018939 236 HIDTKADITVSCVPMDDCRASDYGLMK----IDRS-GQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVY 310 (348)
Q Consensus 236 h~~~~aditi~~~~~~~~~~~~~g~v~----id~~-g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiY 310 (348)
+.+.+..+ +.+.+++.+..+.||++. ++++ .+|.++.|||..++.+ ++++.+|.|
T Consensus 149 ye~~g~sv-i~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~AP-------------------Snlai~GRY 208 (291)
T COG1210 149 YEETGGSV-IGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAP-------------------SNLAIVGRY 208 (291)
T ss_pred HHHhCCcE-EEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCC-------------------cceeeeeee
Confidence 98888753 666777666688999998 4443 5999999999887664 689999999
Q ss_pred EEeHHHHHHHHHhhCCC--CcchhhhhHHhccccCCeee
Q 018939 311 LFRTDVLLNLLRSSYPL--SNDFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 311 if~~~vl~~ll~~~~~~--~~d~~~diip~l~~~~~v~~ 347 (348)
+|++++|.. |++..++ ...+.+|.|..++++..|+|
T Consensus 209 il~p~IFd~-L~~~~~G~ggEiQLTDai~~L~~~~~v~a 246 (291)
T COG1210 209 VLTPEIFDI-LEETKPGAGGEIQLTDAIKKLLKKEPVLA 246 (291)
T ss_pred ecCHHHHHH-HhhCCCCCCCEeeHHHHHHHHHhhCcEEE
Confidence 999999985 6666565 46788999999999988887
No 32
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.96 E-value=1.6e-27 Score=217.04 Aligned_cols=199 Identities=25% Similarity=0.454 Sum_probs=156.9
Q ss_pred EEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcE
Q 018939 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFV 174 (348)
Q Consensus 95 aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v 174 (348)
+||||||.|+||+|+|..+||+|+|++|+ |||+|+++++.++|+++|+|++++..+.+.+|+.+. ..++. .+
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~------~~~~~-~i 72 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDG------SKFGV-NI 72 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCc------cccCc-cE
Confidence 59999999999999999999999999999 999999999999999999999999988888887531 12221 13
Q ss_pred EEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEecCCCC
Q 018939 175 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCR 254 (348)
Q Consensus 175 ~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~~~~~ 254 (348)
.++. +. .+.||++++..+... ..++|+|++||++++.++..+++.|..+++++++++.+...
T Consensus 73 ~~~~--~~-------~~~g~~~~l~~~~~~-------~~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~-- 134 (220)
T cd06426 73 SYVR--ED-------KPLGTAGALSLLPEK-------PTDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV-- 134 (220)
T ss_pred EEEE--CC-------CCCcchHHHHHHHhh-------CCCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--
Confidence 3322 11 136899998766432 25899999999999999999999999989999998877543
Q ss_pred CCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCCCcchhhh
Q 018939 255 ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSNDFGSE 334 (348)
Q Consensus 255 ~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~~~d~~~d 334 (348)
...||++.+|+ |+|.+|.|||... .++++|+|+|+++++..+ +. .......+
T Consensus 135 ~~~~g~~~~d~-~~v~~~~ek~~~~-----------------------~~~~~Giy~~~~~~~~~i-~~---~~~~~l~~ 186 (220)
T cd06426 135 QVPYGVVETEG-GRITSIEEKPTHS-----------------------FLVNAGIYVLEPEVLDLI-PK---NEFFDMPD 186 (220)
T ss_pred CCcceEEEECC-CEEEEEEECCCCC-----------------------CeEEEEEEEEcHHHHhhc-CC---CCCcCHHH
Confidence 45699999986 8999999987542 468999999999998764 32 22223478
Q ss_pred hHHhcccc-CCeee
Q 018939 335 IIPASVKD-HNVQV 347 (348)
Q Consensus 335 iip~l~~~-~~v~~ 347 (348)
+++.++++ .++++
T Consensus 187 ~~~~~i~~~~~i~~ 200 (220)
T cd06426 187 LIEKLIKEGKKVGV 200 (220)
T ss_pred HHHHHHHCCCcEEE
Confidence 89988876 44654
No 33
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.96 E-value=9.4e-28 Score=216.87 Aligned_cols=189 Identities=50% Similarity=0.801 Sum_probs=151.5
Q ss_pred EEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcE
Q 018939 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFV 174 (348)
Q Consensus 95 aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v 174 (348)
+||||||.||||+|+|...||+|+||+|+||||+|+++++.++|+++++|++++..+++.+|+.+.+.++ .+.....+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~--~~~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWD--LDRKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCccc--CCCCCCCE
Confidence 5999999999999999999999999999878999999999999999999999999999999886322111 11111225
Q ss_pred EEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEecCCCC
Q 018939 175 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCR 254 (348)
Q Consensus 175 ~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~~~~~ 254 (348)
.++...+.. .++|..||++|++.+...+.+ ...++|+|++||++++.++.++++.|.++++++|+++.
T Consensus 79 ~~~~~~~~~---~~~~~~Gta~al~~a~~~i~~---~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------ 146 (200)
T cd02508 79 FILPPQQRK---GGDWYRGTADAIYQNLDYIER---SDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------ 146 (200)
T ss_pred EEeCcccCC---CCCcccCcHHHHHHHHHHHHh---CCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh------
Confidence 555433321 124568999999999998853 13478999999999999999999999998988888765
Q ss_pred CCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhC-CCCcchhh
Q 018939 255 ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSY-PLSNDFGS 333 (348)
Q Consensus 255 ~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~-~~~~d~~~ 333 (348)
+++|+|+|++++|..+++... .+..++.+
T Consensus 147 --------------------------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~ 176 (200)
T cd02508 147 --------------------------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGK 176 (200)
T ss_pred --------------------------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHH
Confidence 269999999999987776532 23568889
Q ss_pred hhHHhccccCCeee
Q 018939 334 EIIPASVKDHNVQV 347 (348)
Q Consensus 334 diip~l~~~~~v~~ 347 (348)
|+++.++++.+|++
T Consensus 177 d~i~~l~~~~~v~~ 190 (200)
T cd02508 177 DIIPAMLKKLKIYA 190 (200)
T ss_pred HHHHHHhccCcEEE
Confidence 99999999877764
No 34
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.95 E-value=2.9e-27 Score=224.55 Aligned_cols=201 Identities=21% Similarity=0.303 Sum_probs=152.0
Q ss_pred eeEEEEeCCCCccCCCCCC-CCCccceeeCCcchHHHHHHHHhHhc-CCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 93 VAAIILGGGAGTRLFPLTN-RRAKPAVPIGGNYRLIDIPMSNCINS-GFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~-~~PKpllpIgGk~pLId~~l~~l~~a-Gi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
|++||||||.||||+|||. .+||+|+|++|.+|||+++++++.++ ++++|+|+|++...++.++..+.. .
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~~--------~ 72 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPEG--------L 72 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhhc--------C
Confidence 5799999999999999996 79999999999339999999999998 599999999987655333222211 0
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccc--cCHHHHHHHHHh---cCCcEEE
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYR--MDYTEFLQKHID---TKADITV 245 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~--~d~~~ll~~h~~---~~aditi 245 (348)
..+.++.... ..||++|+..+..++.+. ..++.++|++||+++. .+|.++++.|.+ .++.+|+
T Consensus 73 -~~~~ii~ep~---------~~gTa~ai~~a~~~~~~~--~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~ 140 (274)
T cd02509 73 -PEENIILEPE---------GRNTAPAIALAALYLAKR--DPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTF 140 (274)
T ss_pred -CCceEEECCC---------CCCcHHHHHHHHHHHHhc--CCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 1144443222 269999999999888531 2457899999999876 467777766553 6778888
Q ss_pred EEEecCCCCCCcceEEEECCCC-----cEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHH
Q 018939 246 SCVPMDDCRASDYGLMKIDRSG-----QIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNL 320 (348)
Q Consensus 246 ~~~~~~~~~~~~~g~v~id~~g-----~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~l 320 (348)
.+.|... .+.||+++.++++ +|..|.|||+.+..+.+. ....+++|+|+|+|++++|...
T Consensus 141 gi~p~~~--~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~-------------~~g~~~wNsGiyi~~~~~l~~~ 205 (274)
T cd02509 141 GIKPTRP--ETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYL-------------ESGNYLWNSGIFLFRAKTFLEE 205 (274)
T ss_pred EeeecCC--CCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHHh-------------hcCCeEEECceeeeeHHHHHHH
Confidence 8888644 5789999998763 899999999865432211 0124789999999999999999
Q ss_pred HHhhCCCC
Q 018939 321 LRSSYPLS 328 (348)
Q Consensus 321 l~~~~~~~ 328 (348)
++...|..
T Consensus 206 l~~~~p~~ 213 (274)
T cd02509 206 LKKHAPDI 213 (274)
T ss_pred HHHHCHHH
Confidence 98776643
No 35
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.95 E-value=5.6e-27 Score=215.43 Aligned_cols=206 Identities=19% Similarity=0.247 Sum_probs=154.0
Q ss_pred EEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcE
Q 018939 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFV 174 (348)
Q Consensus 95 aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v 174 (348)
.||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++++|+++... ....++.+.+.. .. . .+
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~~~-~~---~--~~ 72 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESLKL-LA---P--NA 72 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHHHH-hC---C--CC
Confidence 48999999999999999999999999999 99999999999999999999987532 222344333310 00 0 12
Q ss_pred EEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEecCCCC
Q 018939 175 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCR 254 (348)
Q Consensus 175 ~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~~~~~ 254 (348)
.++..... ..||+++++.++..+. ..++|+|++||++++.++.+++..|.+.+.++++++.+.+
T Consensus 73 ~i~~~~~~--------~~g~~~~l~~a~~~l~-----~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 136 (231)
T cd04183 73 TVVELDGE--------TLGAACTVLLAADLID-----NDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS--- 136 (231)
T ss_pred EEEEeCCC--------CCcHHHHHHHHHhhcC-----CCCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC---
Confidence 22221111 3799999999988773 3578999999999999999999989888888887776652
Q ss_pred CCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHH-HHHHHHHhhC-----CCC
Q 018939 255 ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTD-VLLNLLRSSY-----PLS 328 (348)
Q Consensus 255 ~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~-vl~~ll~~~~-----~~~ 328 (348)
...||++.+|++|+|..|.||+.. ...+++|+|+|+++ +|..+++... +..
T Consensus 137 ~~~~~~v~~d~~~~v~~~~ek~~~-----------------------~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~ 193 (231)
T cd04183 137 HPRWSYVKLDENGRVIETAEKEPI-----------------------SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNG 193 (231)
T ss_pred CCCeEEEEECCCCCEEEeEEcCCC-----------------------CCccEeEEEEECcHHHHHHHHHHHHhhcccccC
Confidence 457999999999999999998532 14579999999987 6666565321 112
Q ss_pred cchhhhhHHhccccC-Ceee
Q 018939 329 NDFGSEIIPASVKDH-NVQV 347 (348)
Q Consensus 329 ~d~~~diip~l~~~~-~v~~ 347 (348)
..+.+++++.++++. +|++
T Consensus 194 ~~~~~d~i~~~~~~g~~v~~ 213 (231)
T cd04183 194 EFYISPLYNELILDGKKVGI 213 (231)
T ss_pred cEEEhHHHHHHHHcCCEEEE
Confidence 334579999988763 4654
No 36
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.2e-27 Score=221.51 Aligned_cols=217 Identities=23% Similarity=0.357 Sum_probs=178.9
Q ss_pred CCeeEEEEeCC--CCccCCCCCCCCCccceeeCCcchHHHHHHHHhHh-cCCCeEEEEccCCchhHHHHHHHhccCCCCc
Q 018939 91 KNVAAIILGGG--AGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCIN-SGFNKIFIMTQFNSFSLNRHLARSYNLGNGV 167 (348)
Q Consensus 91 ~~~~aIILAgG--~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~-aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~ 167 (348)
++++||||.|| +||||+||+.+.||||+||+|. |||+|.++.|.+ .|..+|+++.-|..+.+.+++.+-- +
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~---~-- 74 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQ---Q-- 74 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHH---h--
Confidence 46889999999 6999999999999999999999 999999999999 6899999998888777777765311 1
Q ss_pred ccCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEE
Q 018939 168 NFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSC 247 (348)
Q Consensus 168 ~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~ 247 (348)
.|. -.|++|.++. +.||+++++.+.+.+-. ...+.|+++++|..++.++++|++.|+..++.+|++.
T Consensus 75 e~~-~pvrYL~E~~---------plGtaGgLyhFrdqIl~---g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~ 141 (407)
T KOG1460|consen 75 EFK-VPVRYLREDN---------PLGTAGGLYHFRDQILA---GSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLV 141 (407)
T ss_pred hcc-cchhhhccCC---------CCCcccceeehhhHHhc---CCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEE
Confidence 111 1266666544 37999999999988753 3578999999999999999999999999999999999
Q ss_pred EecCCCCCCcceEEEEC-CCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHh---
Q 018939 248 VPMDDCRASDYGLMKID-RSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS--- 323 (348)
Q Consensus 248 ~~~~~~~~~~~g~v~id-~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~--- 323 (348)
..++.+.+++||.+..| ..|+|+++.|||..-- ++++|+|+|+|++++|..+-+-
T Consensus 142 tkvs~e~asnfG~lV~dP~t~evlHYveKPsTfv---------------------Sd~InCGvYlF~~eif~~i~~v~~q 200 (407)
T KOG1460|consen 142 TKVSREQASNFGCLVEDPSTGEVLHYVEKPSTFV---------------------SDIINCGVYLFTPEIFNAIAEVYRQ 200 (407)
T ss_pred EEecHhHhhccCeeeecCCcCceEEeecCcchhh---------------------hcccceeEEEecHHHHHHHHHHHHH
Confidence 99988889999999998 4699999999997542 5789999999999999865321
Q ss_pred ---------hC----CC---CcchhhhhHHhccccCCeee
Q 018939 324 ---------SY----PL---SNDFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 324 ---------~~----~~---~~d~~~diip~l~~~~~v~~ 347 (348)
.. |+ ...+..|+++.|+....+|+
T Consensus 201 ~~~~~~~~~~~~~l~~g~~d~irLeqDvlspLag~k~lY~ 240 (407)
T KOG1460|consen 201 RQDLLEVEKDLPLLQPGPADFIRLEQDVLSPLAGSKQLYA 240 (407)
T ss_pred HHhhhhhhhcccccCCCccceEEeechhhhhhcCCCceEE
Confidence 00 11 24567899999999888876
No 37
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.94 E-value=5e-26 Score=209.02 Aligned_cols=198 Identities=20% Similarity=0.261 Sum_probs=153.7
Q ss_pred EEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcE
Q 018939 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFV 174 (348)
Q Consensus 95 aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v 174 (348)
+||||||.|+||+|+|..+||||+|++|+ |||+|+++++.++|+++|+|++++..+++.+|+.+ + . .+
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~-~-------~---~~ 68 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKK-Y-------P---NI 68 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhc-c-------C---Ce
Confidence 69999999999999999999999999999 99999999999999999999999998888888742 1 1 14
Q ss_pred EEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEecCCCC
Q 018939 175 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCR 254 (348)
Q Consensus 175 ~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~~~~~ 254 (348)
.++...+.. ..|++++++.++.++ .++++|++||++++. ++++.|.+.++++++++.+..+..
T Consensus 69 ~~~~~~~~~-------~~g~~~s~~~~~~~~-------~~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 131 (229)
T cd02523 69 KFVYNPDYA-------ETNNIYSLYLARDFL-------DEDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEW 131 (229)
T ss_pred EEEeCcchh-------hhCcHHHHHHHHHHc-------CCCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccc
Confidence 444332211 369999999998776 378999999999865 467778888899999888754433
Q ss_pred CCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHh---hCC--CCc
Q 018939 255 ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYP--LSN 329 (348)
Q Consensus 255 ~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~---~~~--~~~ 329 (348)
...++....| ++++..+.|||..... ...+++|+|+|+++++..+.+. ..+ ...
T Consensus 132 ~~~~~~~~~~-~~~v~~~~~k~~~~~~--------------------~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~ 190 (229)
T cd02523 132 EDEYVKDLDD-AGVLLGIISKAKNLEE--------------------IQGEYVGISKFSPEDADRLAEALEELIEAGRVN 190 (229)
T ss_pred cccceeeecC-ccceEeecccCCCcch--------------------hceEEEeEEEECHHHHHHHHHHHHHHHhccccc
Confidence 4556554433 3899999998854321 2578999999999998776432 111 346
Q ss_pred chhhhhHHhcccc
Q 018939 330 DFGSEIIPASVKD 342 (348)
Q Consensus 330 d~~~diip~l~~~ 342 (348)
++.+++++.++++
T Consensus 191 ~~~~d~i~~l~~~ 203 (229)
T cd02523 191 LYYEDALQRLISE 203 (229)
T ss_pred ccHHHHHHHHHhh
Confidence 7778999999883
No 38
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.94 E-value=1.6e-26 Score=211.81 Aligned_cols=204 Identities=20% Similarity=0.276 Sum_probs=156.5
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
+++||||||.|+||+|+|...||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+.+... .+.+ .
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~--~~~~-~ 76 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSS--LSSK-M 76 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhccccc--ccCC-c
Confidence 5799999999999999999999999999999 9999999999999999999999999999989987543110 0111 1
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHH--HHhcCCcEEEEEEec
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQK--HIDTKADITVSCVPM 250 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~--h~~~~aditi~~~~~ 250 (348)
.+.+....+. ...||+++++.+.+.+ .++|+|++||++++.++.++++. +...++++++++...
T Consensus 77 ~v~~~~~~~~-------~~~Gta~~l~~~~~~i-------~~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~ 142 (216)
T cd02507 77 IVDVITSDLC-------ESAGDALRLRDIRGLI-------RSDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLA 142 (216)
T ss_pred eEEEEEccCC-------CCCccHHHHHHHhhcC-------CCCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEec
Confidence 2334333222 2479999999998766 36899999999999999999965 555566667666554
Q ss_pred CCCC-------CCcceEEEECCC---CcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHH
Q 018939 251 DDCR-------ASDYGLMKIDRS---GQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVL 317 (348)
Q Consensus 251 ~~~~-------~~~~g~v~id~~---g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl 317 (348)
.... ..+++++.+|++ .+++.+.|+++... ...+...++..+|.. ....++.++|+|+|++++|
T Consensus 143 ~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~--~~~i~~~~l~~~~~~-~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 143 SPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDL--ELIIRKSLLSKHPNV-TIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred cCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcCc--ccccCHHHHhcCCCE-EEEcCcccccEEEecCcCC
Confidence 3221 567899999988 68999999886542 223456667666644 3456789999999999864
No 39
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.94 E-value=1.2e-25 Score=228.97 Aligned_cols=209 Identities=19% Similarity=0.256 Sum_probs=159.8
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
+++|++||||||.|+||++ .+||+|+||+|+ |||+|+++++.++|+++|+|+++++.+.+.+++.. +
T Consensus 5 ~~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~-~-------- 71 (481)
T PRK14358 5 TRPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG-S-------- 71 (481)
T ss_pred cCCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc-C--------
Confidence 4579999999999999976 589999999999 99999999999999999999999988777766631 1
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc--ccccCHHHHHHHHHhcCCcEEEEE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH--LYRMDYTEFLQKHIDTKADITVSC 247 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~--l~~~d~~~ll~~h~~~~aditi~~ 247 (348)
.+.++... ++.||+++++.++.+++. ..++|+|++||+ +...++.++++.|.++++++|+++
T Consensus 72 ---~i~~v~~~---------~~~Gt~~al~~~~~~l~~----~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~ 135 (481)
T PRK14358 72 ---GVAFARQE---------QQLGTGDAFLSGASALTE----GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILT 135 (481)
T ss_pred ---CcEEecCC---------CcCCcHHHHHHHHHHhhC----CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEE
Confidence 14444321 247999999999888741 245799999998 335679999999999999999998
Q ss_pred EecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHH---HHHHHHhh
Q 018939 248 VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDV---LLNLLRSS 324 (348)
Q Consensus 248 ~~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~v---l~~ll~~~ 324 (348)
.+.++ .+.||++.+|++|+|.+|.|||.....+ .....+++|+|+|++++ +.. +...
T Consensus 136 ~~~~~--~~~yG~v~~d~~g~v~~~~Ek~~~~~~~-----------------~~~~~~n~Giyi~~~~~~~~~~~-i~~~ 195 (481)
T PRK14358 136 GELPD--ATGYGRIVRGADGAVERIVEQKDATDAE-----------------KAIGEFNSGVYVFDARAPELARR-IGND 195 (481)
T ss_pred EEcCC--CCCceEEEECCCCCEEEEEECCCCChhH-----------------hhCCeEEEEEEEEchHHHHHHHh-cCCC
Confidence 88775 5669999999999999999998643210 01246899999999665 332 2211
Q ss_pred CCCCcchhhhhHHhccccC-Ceee
Q 018939 325 YPLSNDFGSEIIPASVKDH-NVQV 347 (348)
Q Consensus 325 ~~~~~d~~~diip~l~~~~-~v~~ 347 (348)
.+....+.+|+++.++++. ++++
T Consensus 196 ~~~ge~~l~d~i~~~~~~g~~i~~ 219 (481)
T PRK14358 196 NKAGEYYLTDLLGLYRAGGAQVRA 219 (481)
T ss_pred ccCCeEEHHHHHHHHHHCCCeEEE
Confidence 1222345679999988874 4554
No 40
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.93 E-value=1.3e-24 Score=198.87 Aligned_cols=205 Identities=24% Similarity=0.384 Sum_probs=159.2
Q ss_pred EEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcE
Q 018939 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFV 174 (348)
Q Consensus 95 aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v 174 (348)
|||||||.|+||++ .+||+|+||+|+ |||+|+++++.++|+++++|+++++.+.+.+++.+ + + +
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~-~--------~---~ 64 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN-P--------N---V 64 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC-C--------C---c
Confidence 69999999999975 689999999999 99999999999999999999999987777766632 1 1 3
Q ss_pred EEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-c-ccCHHHHHHHHHhcCCcEEEEEEecCC
Q 018939 175 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-Y-RMDYTEFLQKHIDTKADITVSCVPMDD 252 (348)
Q Consensus 175 ~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~-~~d~~~ll~~h~~~~aditi~~~~~~~ 252 (348)
+++.... ..|++++++.++..+++ ..++|+|+.||+. + ..++..+++.|.+.++++++.+.+..+
T Consensus 65 ~~~~~~~---------~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 131 (229)
T cd02540 65 EFVLQEE---------QLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED 131 (229)
T ss_pred EEEECCC---------CCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC
Confidence 4433211 26899999999988841 2588999999993 3 467899999998878888888877764
Q ss_pred CCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCC---CCc
Q 018939 253 CRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSN 329 (348)
Q Consensus 253 ~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~---~~~ 329 (348)
+..|+.+..|++|+|..+.||+...... ...+.+++|+|+|+++.|..+++...+ ...
T Consensus 132 --p~~~~~~~~~~~~~v~~~~ek~~~~~~~-----------------~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~ 192 (229)
T cd02540 132 --PTGYGRIIRDGNGKVLRIVEEKDATEEE-----------------KAIREVNAGIYAFDAEFLFEALPKLTNNNAQGE 192 (229)
T ss_pred --CCCccEEEEcCCCCEEEEEECCCCChHH-----------------HhhceEEeEEEEEEHHHHHHHHHHcccccCCCc
Confidence 5679988888889999999987532110 012578999999999988777765432 245
Q ss_pred chhhhhHHhcccc-CCeee
Q 018939 330 DFGSEIIPASVKD-HNVQV 347 (348)
Q Consensus 330 d~~~diip~l~~~-~~v~~ 347 (348)
.+.+++++.++++ .+|++
T Consensus 193 ~~~~d~~~~~~~~g~~v~~ 211 (229)
T cd02540 193 YYLTDIIALAVADGLKVAA 211 (229)
T ss_pred EEHHHHHHHHHHCCCEEEE
Confidence 6678999999876 45654
No 41
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.93 E-value=1.5e-24 Score=219.41 Aligned_cols=211 Identities=21% Similarity=0.294 Sum_probs=164.4
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
|+++.+||||||.|+||++ .+||||+|++|+ |||+|+++++.++|++++++++++..+++.+|+.+..
T Consensus 1 m~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~~-------- 68 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGDG-------- 68 (459)
T ss_pred CCcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccCC--------
Confidence 4568999999999999963 789999999999 9999999999999999999999999888888774211
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-c-cccCHHHHHHHHHhcCCcEEEEE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-L-YRMDYTEFLQKHIDTKADITVSC 247 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l-~~~d~~~ll~~h~~~~aditi~~ 247 (348)
.+.++... +.+||+++++.++.++++ ..++|+|++||+ + ...++.++++.|...++++++..
T Consensus 69 ---~i~~~~~~---------~~~Gt~~al~~a~~~l~~----~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~ 132 (459)
T PRK14355 69 ---DVSFALQE---------EQLGTGHAVACAAPALDG----FSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLT 132 (459)
T ss_pred ---ceEEEecC---------CCCCHHHHHHHHHHHhhc----cCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEE
Confidence 24443211 136999999999998852 257899999998 3 45678999999988888999888
Q ss_pred EecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCC-
Q 018939 248 VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP- 326 (348)
Q Consensus 248 ~~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~- 326 (348)
.+.++ +..||.+.+|++|+|..|.|||.....+ ...+++++|+|+|++++|..+++...+
T Consensus 133 ~~~~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 193 (459)
T PRK14355 133 ARLEN--PFGYGRIVRDADGRVLRIVEEKDATPEE-----------------RSIREVNSGIYCVEAAFLFDAIGRLGND 193 (459)
T ss_pred EEcCC--CCcCCEEEEcCCCCEEEEEEcCCCChhH-----------------hhccEEEEEEEEEeHHHHHHHHHHcCcc
Confidence 77765 4579999999899999999987432110 013678999999999987776654332
Q ss_pred --CCcchhhhhHHhccccC-Ceee
Q 018939 327 --LSNDFGSEIIPASVKDH-NVQV 347 (348)
Q Consensus 327 --~~~d~~~diip~l~~~~-~v~~ 347 (348)
....+.+|+++.++++. ++++
T Consensus 194 ~~~~e~~~~d~i~~l~~~g~~v~~ 217 (459)
T PRK14355 194 NAQGEYYLTDIVAMAAAEGLRCLA 217 (459)
T ss_pred ccCCceeHHHHHHHHHHCCCeEEE
Confidence 13355689999998763 4553
No 42
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.93 E-value=2.9e-24 Score=218.74 Aligned_cols=213 Identities=19% Similarity=0.281 Sum_probs=165.6
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
|..+.+||||||.|+||++ .+||+|+|++|+ |||+|+++++.++|+++++|++++..+.+.+++....
T Consensus 2 ~~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~-------- 69 (482)
T PRK14352 2 PRPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA-------- 69 (482)
T ss_pred CCCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC--------
Confidence 5568899999999999976 689999999999 9999999999999999999999998877777764211
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-cc-ccCHHHHHHHHHhcCCcEEEEE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LY-RMDYTEFLQKHIDTKADITVSC 247 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~-~~d~~~ll~~h~~~~aditi~~ 247 (348)
. .+.++.. ++..||+++++.++.++.+ ...++|+|++||+ ++ ..++.++++.|.+.++++++++
T Consensus 70 -~-~~~~~~~---------~~~~Gt~~si~~al~~l~~---~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~ 135 (482)
T PRK14352 70 -P-EVDIAVQ---------DEQPGTGHAVQCALEALPA---DFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLT 135 (482)
T ss_pred -C-ccEEEeC---------CCCCCcHHHHHHHHHHhcc---CCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEE
Confidence 0 1233321 1246999999999988742 1347899999999 44 4579999999988888888888
Q ss_pred EecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCC
Q 018939 248 VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL 327 (348)
Q Consensus 248 ~~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~ 327 (348)
.+.++ +..||.+..|++|+|.+|.|||.....+ .....+++|+|+|++++|..+++...+.
T Consensus 136 ~~~~~--p~~yg~~~~~~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~ 196 (482)
T PRK14352 136 TTLDD--PTGYGRILRDQDGEVTAIVEQKDATPSQ-----------------RAIREVNSGVYAFDAAVLRSALARLSSD 196 (482)
T ss_pred eecCC--CCCCCEEEECCCCCEEEEEECCCCCHHH-----------------hhcceEEEEEEEEEHHHHHHHHHhhCcc
Confidence 87765 5679999888889999999998754210 0124689999999999998877654332
Q ss_pred ---CcchhhhhHHhcccc-CCeee
Q 018939 328 ---SNDFGSEIIPASVKD-HNVQV 347 (348)
Q Consensus 328 ---~~d~~~diip~l~~~-~~v~~ 347 (348)
...+.+|+++.++++ ++|++
T Consensus 197 ~~~~e~~l~d~i~~l~~~g~~V~~ 220 (482)
T PRK14352 197 NAQGELYLTDVLAIAREAGHRVGA 220 (482)
T ss_pred ccCCcEeHHHHHHHHHHCCCeEEE
Confidence 334568999999987 46764
No 43
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.93 E-value=5.4e-25 Score=201.24 Aligned_cols=201 Identities=22% Similarity=0.341 Sum_probs=151.3
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCch-hHHHHHHHhccCCCCcccCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSF-SLNRHLARSYNLGNGVNFGD 171 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~-~l~~hl~r~y~~~~g~~~~~ 171 (348)
|++||||||.|+||+|+|...||+|+|++|+ |||+|+++++.++|+++|+|++++... .+.+++.+ +.+.. +.
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~-~~~~~----~~ 74 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRS-FPLNL----KQ 74 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHh-ccccc----Cc
Confidence 5899999999999999999999999999999 999999999999999999999997653 45555542 21111 11
Q ss_pred CcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEecC
Q 018939 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMD 251 (348)
Q Consensus 172 ~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~~ 251 (348)
....+.. .+ ....||+++++.+...+ .++|+|++||.+++.++.++++.|++.++.+|+++.+..
T Consensus 75 ~~~~~~~-~~-------~~~~gt~~al~~~~~~i-------~~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~ 139 (214)
T cd04198 75 KLDEVTI-VL-------DEDMGTADSLRHIRKKI-------KKDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPP 139 (214)
T ss_pred ceeEEEe-cC-------CCCcChHHHHHHHHhhc-------CCCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccC
Confidence 1112221 11 12479999999998765 368999999999999999999999999999999987754
Q ss_pred CC-----------CCCcceEEEECCC-CcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHH
Q 018939 252 DC-----------RASDYGLMKIDRS-GQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVL 317 (348)
Q Consensus 252 ~~-----------~~~~~g~v~id~~-g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl 317 (348)
.. ...++.++.+|++ +++..+....+.+ ....+...++..+|+. ....++.++++|+|++++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~~--~~~~~~~~~l~~~~~~-~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 140 VSSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEEDLD--EDLELRKSLLKRHPRV-TITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CcccccCCcccccCCCCCceEEEcCCCCEEEEECCHHHhh--hhhhHHHHHHHhCCCE-EEEcCcccceEEEEEeeeC
Confidence 21 1235778888864 7898887643322 2234566777776654 3456789999999999874
No 44
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.93 E-value=3.8e-24 Score=216.22 Aligned_cols=206 Identities=17% Similarity=0.259 Sum_probs=157.3
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
+++|.+||||||.|+||+ ..+||||+|++|+ |||+|+++.+.++|++++++++++..+.+.+++..
T Consensus 3 ~~~~~aiIlAaG~gtRl~---~~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~---------- 68 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMY---SDLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLAD---------- 68 (456)
T ss_pred CCCceEEEEcCCCCCcCC---CCCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhcc----------
Confidence 457999999999999997 3689999999999 99999999999999999999999987777666531
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc--ccccCHHHHHHHHHhcCCcEEEEE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH--LYRMDYTEFLQKHIDTKADITVSC 247 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~--l~~~d~~~ll~~h~~~~aditi~~ 247 (348)
+.+.++... +..||+++++.++.+++ ..++|+|++||+ +.+.++.++++.|.+.+ +++.+
T Consensus 69 --~~~~~i~~~---------~~~Gt~~al~~a~~~l~-----~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~ 130 (456)
T PRK09451 69 --EPLNWVLQA---------EQLGTGHAMQQAAPFFA-----DDEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLT 130 (456)
T ss_pred --CCcEEEECC---------CCCCcHHHHHHHHHhhc-----cCCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEE
Confidence 113443221 13699999999998774 347899999998 44567999998886544 45667
Q ss_pred EecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCC-
Q 018939 248 VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP- 326 (348)
Q Consensus 248 ~~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~- 326 (348)
.+.++ ++.||++.. ++|+|.+|.|||.....+ .....+++|+|+|++++|.++++...+
T Consensus 131 ~~~~~--~~~yG~v~~-~~g~V~~~~EKp~~~~~~-----------------~~~~~~~~GiYi~~~~~l~~~l~~~~~~ 190 (456)
T PRK09451 131 VKLDN--PTGYGRITR-ENGKVVGIVEQKDATDEQ-----------------RQIQEINTGILVANGADLKRWLAKLTNN 190 (456)
T ss_pred EEcCC--CCCceEEEe-cCCeEEEEEECCCCChHH-----------------hhccEEEEEEEEEEHHHHHHHHHhcCCc
Confidence 77665 567999754 578999999999643210 012578999999999999887765332
Q ss_pred --CCcchhhhhHHhcccc-CCeee
Q 018939 327 --LSNDFGSEIIPASVKD-HNVQV 347 (348)
Q Consensus 327 --~~~d~~~diip~l~~~-~~v~~ 347 (348)
....+.+|+++.++++ .+|++
T Consensus 191 ~~~~e~~l~d~i~~~i~~g~~v~~ 214 (456)
T PRK09451 191 NAQGEYYITDIIALAHQEGREIVA 214 (456)
T ss_pred cccCceeHHHHHHHHHHCCCeEEE
Confidence 2345678999999987 45553
No 45
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=4.7e-24 Score=208.11 Aligned_cols=206 Identities=24% Similarity=0.344 Sum_probs=163.3
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
+++.+||||||.|||| .+..||-|.|++|+ ||++|+++.+...+.+++++++++..+.+..++.+.. .+.
T Consensus 1 ~~~~~vILAAGkGTRM---kS~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~----~v~-- 70 (460)
T COG1207 1 MSLSAVILAAGKGTRM---KSDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERD----DVE-- 70 (460)
T ss_pred CCceEEEEecCCCccc---cCCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcccc----Cce--
Confidence 3578999999999999 67899999999999 9999999999999999999999999999888775221 111
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-ccccC-HHHHHHHHHhcCCcEEEEEE
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHIDTKADITVSCV 248 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~d-~~~ll~~h~~~~aditi~~~ 248 (348)
.+++.. ++||++|+.+++++|.+ ....++||++||. |...+ +.++++.|...++.++++++
T Consensus 71 ----~v~Q~e----------qlGTgHAV~~a~~~l~~---~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~ 133 (460)
T COG1207 71 ----FVLQEE----------QLGTGHAVLQALPALAD---DYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTA 133 (460)
T ss_pred ----EEEecc----------cCChHHHHHhhhhhhhc---CCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEE
Confidence 233333 37999999999999942 1345799999999 55554 78899999999999999999
Q ss_pred ecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhC---
Q 018939 249 PMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSY--- 325 (348)
Q Consensus 249 ~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~--- 325 (348)
..++ ++.||.+..+++|+|..|.|..+-.+. ++.-..+|+|+|+|+...|.+.|..--
T Consensus 134 ~~~d--P~GYGRIvr~~~g~V~~IVE~KDA~~e-----------------ek~I~eiNtGiy~f~~~~L~~~L~~l~nnN 194 (460)
T COG1207 134 ELDD--PTGYGRIVRDGNGEVTAIVEEKDASEE-----------------EKQIKEINTGIYAFDGAALLRALPKLSNNN 194 (460)
T ss_pred EcCC--CCCcceEEEcCCCcEEEEEEcCCCCHH-----------------HhcCcEEeeeEEEEcHHHHHHHHHHhcccc
Confidence 9987 789999999999999999997664431 123457899999999998888886431
Q ss_pred CCCcchhhhhHHhcccc
Q 018939 326 PLSNDFGSEIIPASVKD 342 (348)
Q Consensus 326 ~~~~d~~~diip~l~~~ 342 (348)
.+....++|++..+-.+
T Consensus 195 aqgEYYLTDvI~i~~~~ 211 (460)
T COG1207 195 AQGEYYLTDVIAIARNE 211 (460)
T ss_pred ccCcEeHHHHHHHHHhC
Confidence 12334556776655443
No 46
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.91 E-value=1.6e-23 Score=212.78 Aligned_cols=201 Identities=20% Similarity=0.293 Sum_probs=144.8
Q ss_pred eeEEEEeCCCCccCCCCCCC-CCccceeeCC-cchHHHHHHHHhHhcCCCeEEEEccCCchhH-HHHHHHhccCCCCccc
Q 018939 93 VAAIILGGGAGTRLFPLTNR-RAKPAVPIGG-NYRLIDIPMSNCINSGFNKIFIMTQFNSFSL-NRHLARSYNLGNGVNF 169 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~-~PKpllpIgG-k~pLId~~l~~l~~aGi~~IvVvt~~~~~~l-~~hl~r~y~~~~g~~~ 169 (348)
|.+||||||.||||+|||.. .||+|+|+.| + |||++.++.+..+++++++|+++...... .+.+ +.+
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~-~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l-~~~-------- 70 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDL-TMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQL-REI-------- 70 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCC-cHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHH-HHc--------
Confidence 57999999999999999996 8999999977 6 99999999999999999999998665432 2333 222
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCccccc--CHHHHHHHH---HhcCCcEE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRM--DYTEFLQKH---IDTKADIT 244 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~--d~~~ll~~h---~~~~adit 244 (348)
+.....++.... ..|||+++..+...+.+.. ...+.++|++||+++.. +|.++++.+ .+.++.+|
T Consensus 71 ~~~~~~~i~Ep~---------~~gTa~ai~~aa~~~~~~~-~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvt 140 (468)
T TIGR01479 71 GKLASNIILEPV---------GRNTAPAIALAALLAARRN-GEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVT 140 (468)
T ss_pred CCCcceEEeccc---------ccCchHHHHHHHHHHHHHH-CCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEE
Confidence 111123333221 2689999988776663200 13456999999987643 488888765 34466677
Q ss_pred EEEEecCCCCCCcceEEEECC------CCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHH
Q 018939 245 VSCVPMDDCRASDYGLMKIDR------SGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLL 318 (348)
Q Consensus 245 i~~~~~~~~~~~~~g~v~id~------~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~ 318 (348)
+...|... .+.||++..|+ .++|..|.|||+.+..+.+.. ...+++|+|+|+|+.+.|.
T Consensus 141 lgi~p~~p--~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~-------------~g~~~wNsGif~~~~~~ll 205 (468)
T TIGR01479 141 FGIVPTHP--ETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLE-------------SGDYYWNSGMFLFRASRYL 205 (468)
T ss_pred EEecCCCC--CCCceEEEeCCccCCCCceEEeEEEECCChHHHHHHHh-------------cCCeEEEeeEEEEEHHHHH
Confidence 76666543 57899999984 269999999998654322211 1247899999999999998
Q ss_pred HHHHhhCCCC
Q 018939 319 NLLRSSYPLS 328 (348)
Q Consensus 319 ~ll~~~~~~~ 328 (348)
..++...|..
T Consensus 206 ~~l~~~~p~~ 215 (468)
T TIGR01479 206 AELKKHAPDI 215 (468)
T ss_pred HHHHHHCHHH
Confidence 8888766643
No 47
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.91 E-value=6e-23 Score=206.70 Aligned_cols=201 Identities=21% Similarity=0.305 Sum_probs=157.5
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
+.+||||||.|+||++ .+||+|+|++|+ |||+|+++++.++|+.+++|++++..+.+.+++.+ + +
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~-~----------~ 66 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAH-L----------P 66 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcc-c----------C
Confidence 6799999999999974 689999999999 99999999999999999999999988777777642 1 1
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc--ccccCHHHHHHHHHhcCCcEEEEEEec
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH--LYRMDYTEFLQKHIDTKADITVSCVPM 250 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~--l~~~d~~~ll~~h~~~~aditi~~~~~ 250 (348)
.+.++... ++.|++++++.++.++++ ..++++|++||+ +...++..+++.|.+.++++++.+.+.
T Consensus 67 ~i~~v~~~---------~~~G~~~sv~~~~~~l~~----~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~ 133 (450)
T PRK14360 67 GLEFVEQQ---------PQLGTGHAVQQLLPVLKG----FEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARL 133 (450)
T ss_pred CeEEEEeC---------CcCCcHHHHHHHHHHhhc----cCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 24454321 236899999999988852 246899999999 345679999999998899999888877
Q ss_pred CCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCC---
Q 018939 251 DDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL--- 327 (348)
Q Consensus 251 ~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~--- 327 (348)
++ +..||.+.+|++|+|.+|.|||.....+ ...+++++|+|+|++++|..+++...+.
T Consensus 134 ~~--~~~~g~~~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~ 194 (450)
T PRK14360 134 PN--PKGYGRVFCDGNNLVEQIVEDRDCTPAQ-----------------RQNNRINAGIYCFNWPALAEVLPKLSSNNDQ 194 (450)
T ss_pred CC--CCCccEEEECCCCCEEEEEECCCCChhH-----------------hcCcEEEEEEEEEEHHHHHHHHhhccccccC
Confidence 65 5669999999999999999998643210 1136799999999999998887654332
Q ss_pred CcchhhhhHHhcc
Q 018939 328 SNDFGSEIIPASV 340 (348)
Q Consensus 328 ~~d~~~diip~l~ 340 (348)
...+.+|+++.+.
T Consensus 195 ~e~~~td~i~~~~ 207 (450)
T PRK14360 195 KEYYLTDTVSLLD 207 (450)
T ss_pred CceeHHHHHHHHh
Confidence 2345567777653
No 48
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.91 E-value=6.6e-23 Score=206.00 Aligned_cols=203 Identities=23% Similarity=0.328 Sum_probs=155.8
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
|++||||||.|+||++ .+||||+||+|+ |||+|+++++.++|+++++|++++..+.+.+++. .| +
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~-~~--------~-- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALA-NR--------D-- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhc-CC--------C--
Confidence 6899999999999986 789999999999 9999999999999999999999999888877764 22 1
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-cc-ccCHHHHHHHHHhcCCcEEEEEEec
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LY-RMDYTEFLQKHIDTKADITVSCVPM 250 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~-~~d~~~ll~~h~~~~aditi~~~~~ 250 (348)
+.++.... +.||+++++.++.+++ ..++|++++||+ ++ ..++..+++.|.+. ++++++.+.
T Consensus 66 -i~~~~~~~---------~~G~~~ai~~a~~~l~-----~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~ 128 (451)
T TIGR01173 66 -VNWVLQAE---------QLGTGHAVLQALPFLP-----DDGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKL 128 (451)
T ss_pred -cEEEEcCC---------CCchHHHHHHHHHhcC-----CCCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEec
Confidence 33332211 2589999999998874 247899999999 34 45688999988764 467777776
Q ss_pred CCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCC---
Q 018939 251 DDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL--- 327 (348)
Q Consensus 251 ~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~--- 327 (348)
++ +..|+.+..|++|+|..|.|||...... ...+.+++|+|+|++++|..+++...+.
T Consensus 129 ~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~ 189 (451)
T TIGR01173 129 PD--PTGYGRIIRENDGKVTAIVEDKDANAEQ-----------------KAIKEINTGVYVFDGAALKRWLPKLSNNNAQ 189 (451)
T ss_pred CC--CCCCCEEEEcCCCCEEEEEEcCCCChHH-----------------hcCcEEEEEEEEEeHHHHHHHHHhccccccc
Confidence 53 5669999999889999999997543210 0125789999999999987766653321
Q ss_pred CcchhhhhHHhccccC-Cee
Q 018939 328 SNDFGSEIIPASVKDH-NVQ 346 (348)
Q Consensus 328 ~~d~~~diip~l~~~~-~v~ 346 (348)
...+.+++++.++++. +|+
T Consensus 190 ~e~~~~~~~~~l~~~g~~v~ 209 (451)
T TIGR01173 190 GEYYLTDVIALAVADGETVR 209 (451)
T ss_pred CcEeHHHHHHHHHHCCCeEE
Confidence 2345679999988763 454
No 49
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.90 E-value=2.3e-22 Score=202.87 Aligned_cols=207 Identities=20% Similarity=0.281 Sum_probs=157.8
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
|++++||||||.|+||+ ..+||||+||+|+ |||+|+++++.++|++++++++++..+++.+++. ++
T Consensus 1 m~~~avIlAaG~g~Rl~---~~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~------~~---- 66 (458)
T PRK14354 1 MNRYAIILAAGKGTRMK---SKLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLG------DR---- 66 (458)
T ss_pred CCceEEEEeCCCCcccC---CCCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhc------CC----
Confidence 56889999999999996 3699999999999 9999999999999999999999998887776653 11
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-cc-ccCHHHHHHHHHhcCCcEEEEEE
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LY-RMDYTEFLQKHIDTKADITVSCV 248 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~-~~d~~~ll~~h~~~~aditi~~~ 248 (348)
+.++... +..||+++++.++.++++ ..+++++++||. ++ ..++.++++.|.+.++++++++.
T Consensus 67 ---~~~~~~~---------~~~g~~~al~~a~~~l~~----~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~ 130 (458)
T PRK14354 67 ---SEFALQE---------EQLGTGHAVMQAEEFLAD----KEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTA 130 (458)
T ss_pred ---cEEEEcC---------CCCCHHHHHHHHHHHhcc----cCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEE
Confidence 2222211 136999999999988852 247899999998 34 45689999999888888988887
Q ss_pred ecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCC-
Q 018939 249 PMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL- 327 (348)
Q Consensus 249 ~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~- 327 (348)
+.++ +..|+.+..|++|+|..|.|||..... ....+.+++|+|+|+++.|...++...+.
T Consensus 131 ~~~~--~~~~g~v~~d~~~~V~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~ 191 (458)
T PRK14354 131 IAEN--PTGYGRIIRNENGEVEKIVEQKDATEE-----------------EKQIKEINTGTYCFDNKALFEALKKISNDN 191 (458)
T ss_pred EcCC--CCCceEEEEcCCCCEEEEEECCCCChH-----------------HhcCcEEEEEEEEEEHHHHHHHHHHhCccc
Confidence 7654 456898888888999999998853210 00135789999999998776666543221
Q ss_pred --CcchhhhhHHhcccc-CCee
Q 018939 328 --SNDFGSEIIPASVKD-HNVQ 346 (348)
Q Consensus 328 --~~d~~~diip~l~~~-~~v~ 346 (348)
...+.+|+++.+++. .+++
T Consensus 192 ~~~~~~~~d~~~~l~~~g~~v~ 213 (458)
T PRK14354 192 AQGEYYLTDVIEILKNEGEKVG 213 (458)
T ss_pred cCCcEeHHHHHHHHHHCCCeEE
Confidence 223457888888765 3454
No 50
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.90 E-value=2.3e-22 Score=202.55 Aligned_cols=194 Identities=23% Similarity=0.333 Sum_probs=149.0
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
|++||||||.|+||++ .+||||+|++|+ |||+|+++++.+.+ ++|+|++++..+.+.+|+. ++
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~------~~------ 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLP------EW------ 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhcc------cc------
Confidence 6899999999999963 789999999999 99999999999975 8999999998877766553 11
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc--ccccCHHHHHHHHHhcCCcEEEEEEec
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH--LYRMDYTEFLQKHIDTKADITVSCVPM 250 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~--l~~~d~~~ll~~h~~~~aditi~~~~~ 250 (348)
+.++. +. ..+||+++++.++.+++ ..++|++++||+ +.+.++.++++.|.++++++++++.+.
T Consensus 64 -~~~~~--~~-------~~~g~~~ai~~a~~~l~-----~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~ 128 (448)
T PRK14357 64 -VKIFL--QE-------EQLGTAHAVMCARDFIE-----PGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADL 128 (448)
T ss_pred -cEEEe--cC-------CCCChHHHHHHHHHhcC-----cCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEc
Confidence 23322 11 13699999999998874 258999999998 456679999999998899999999888
Q ss_pred CCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCC---
Q 018939 251 DDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL--- 327 (348)
Q Consensus 251 ~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~--- 327 (348)
++ +..||++.+| +|+| .+.||+..+... ...+.+++|+|+|++++|.++++...+.
T Consensus 129 ~~--~~~~g~v~~d-~g~v-~~~e~~~~~~~~-----------------~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~ 187 (448)
T PRK14357 129 ED--PTGYGRIIRD-GGKY-RIVEDKDAPEEE-----------------KKIKEINTGIYVFSGDFLLEVLPKIKNENAK 187 (448)
T ss_pred CC--CCCcEEEEEc-CCeE-EEEECCCCChHH-----------------hcCcEEEeEEEEEEHHHHHHHHHhhCcCCCC
Confidence 75 5679999887 6888 888876533110 0125789999999999988876643221
Q ss_pred CcchhhhhHHhc
Q 018939 328 SNDFGSEIIPAS 339 (348)
Q Consensus 328 ~~d~~~diip~l 339 (348)
...+..|+++.+
T Consensus 188 ~~~~~~d~i~~~ 199 (448)
T PRK14357 188 GEYYLTDAVNFA 199 (448)
T ss_pred CeEEHHHHHHhh
Confidence 223446888776
No 51
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.90 E-value=3.4e-22 Score=201.68 Aligned_cols=207 Identities=18% Similarity=0.252 Sum_probs=154.5
Q ss_pred CeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCC
Q 018939 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGD 171 (348)
Q Consensus 92 ~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~ 171 (348)
.+.+||||||.||||+ ...||+|+|++|+ |||+|++++|...++++|+|++++..+.+.+++.+
T Consensus 5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~------------ 68 (456)
T PRK14356 5 TTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPD------------ 68 (456)
T ss_pred ceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhccc------------
Confidence 4889999999999995 5799999999999 99999999999999999999999987766554421
Q ss_pred CcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-ccc-cCHHHHHHHHHhcCCcEEEEEEe
Q 018939 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDTKADITVSCVP 249 (348)
Q Consensus 172 ~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~-~d~~~ll~~h~~~~aditi~~~~ 249 (348)
..++++.... ..||+++++.+++++++ ...++++|++||+ ++. .++..+++.|. ++++++.+.+
T Consensus 69 ~~~~~v~~~~---------~~Gt~~al~~a~~~l~~---~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~ 134 (456)
T PRK14356 69 EDARFVLQEQ---------QLGTGHALQCAWPSLTA---AGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLT 134 (456)
T ss_pred cCceEEEcCC---------CCCcHHHHHHHHHHHhh---cCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEE
Confidence 0134443221 36999999999988863 2358999999999 444 56888998875 6778888888
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhC---C
Q 018939 250 MDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSY---P 326 (348)
Q Consensus 250 ~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~---~ 326 (348)
.++ +..||++.. ++|+|.+|.|||...... .. .....+++|+|+|++++|..+++... +
T Consensus 135 ~~~--~~~~g~v~~-~~g~V~~~~ek~~~~~~~-------------~~--~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~ 196 (456)
T PRK14356 135 LPD--PGAYGRVVR-RNGHVAAIVEAKDYDEAL-------------HG--PETGEVNAGIYYLRLDAVESLLPRLTNANK 196 (456)
T ss_pred cCC--CCCceEEEE-cCCeEEEEEECCCCChHH-------------hh--hhcCeEEEEEEEEEHHHHHHHHHhccCccc
Confidence 776 567998877 579999999998643110 00 01357899999999999877665422 2
Q ss_pred CCcchhhhhHHhcccc-CCee
Q 018939 327 LSNDFGSEIIPASVKD-HNVQ 346 (348)
Q Consensus 327 ~~~d~~~diip~l~~~-~~v~ 346 (348)
......+++++.+++. ++|+
T Consensus 197 ~~e~~ltd~i~~~~~~g~~v~ 217 (456)
T PRK14356 197 SGEYYITDLVGLAVAEGMNVL 217 (456)
T ss_pred CCcEEHHHHHHHHHHCCCeEE
Confidence 2334568999988754 3454
No 52
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.89 E-value=1.5e-21 Score=195.40 Aligned_cols=204 Identities=21% Similarity=0.306 Sum_probs=150.3
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
|++.+||||||.||||++ .+||||+||+|+ |||+|+++.+..+ +++|+|++++..+.+.+|+.+.+ .
T Consensus 1 m~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~---~----- 67 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF---P----- 67 (430)
T ss_pred CCccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC---C-----
Confidence 467899999999999976 799999999999 9999999999987 78999999999999988886432 1
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEec
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPM 250 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~ 250 (348)
.++++..... .+.||+++++.+. ...++|+|++||..+. ..+.++.+.+.++++++++.+.
T Consensus 68 --~v~~~~~~~~-------~~~gt~~al~~~~--------~~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~ 128 (430)
T PRK14359 68 --GVIFHTQDLE-------NYPGTGGALMGIE--------PKHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHL 128 (430)
T ss_pred --ceEEEEecCc-------cCCCcHHHHhhcc--------cCCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEc
Confidence 1455432211 1368999997631 1358999999999442 2245555666788888888887
Q ss_pred CCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCC---C
Q 018939 251 DDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---L 327 (348)
Q Consensus 251 ~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~---~ 327 (348)
++ +..||.+..| +|+|..|.|++..... + ...+.+++|+|+|++++|..+++.... .
T Consensus 129 ~~--~~~~g~v~~d-~g~v~~i~e~~~~~~~---------------~--~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~ 188 (430)
T PRK14359 129 AD--PKGYGRVVIE-NGQVKKIVEQKDANEE---------------E--LKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQ 188 (430)
T ss_pred CC--CccCcEEEEc-CCeEEEEEECCCCCcc---------------c--ccceEEEeEEEEEEHHHHHHHHHhcCccccc
Confidence 65 5569988775 6899999998854310 0 013678999999999999887654221 1
Q ss_pred CcchhhhhHHhcccc-CCee
Q 018939 328 SNDFGSEIIPASVKD-HNVQ 346 (348)
Q Consensus 328 ~~d~~~diip~l~~~-~~v~ 346 (348)
...+.+|+++.+++. ++++
T Consensus 189 ~e~~l~d~i~~l~~~g~~v~ 208 (430)
T PRK14359 189 KEYYLTDIIALAIEKGETIK 208 (430)
T ss_pred CceehhhHHHHHHHcCCeEE
Confidence 234557888888775 4454
No 53
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.88 E-value=4.3e-21 Score=193.17 Aligned_cols=209 Identities=20% Similarity=0.281 Sum_probs=155.6
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
|+++.+||||||.|+||++ ..||+|+|++|+ |||+|+++++.++|+++++|++++..+.+.+++.+ +
T Consensus 3 ~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~-~-------- 69 (446)
T PRK14353 3 DRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAK-I-------- 69 (446)
T ss_pred cccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhc-c--------
Confidence 5678999999999999963 589999999999 99999999999999999999999988888777642 1
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-cccc-CHHHHHHHHHhcCCcEEEEE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRM-DYTEFLQKHIDTKADITVSC 247 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~-d~~~ll~~h~~~~aditi~~ 247 (348)
+.. +.++... +..|++++++.++..++. ..++|+|++||+ +++. ++..+++ |.+.++++++.+
T Consensus 70 ~~~-~~~~~~~---------~~~G~~~sl~~a~~~l~~----~~~~~lv~~~D~P~i~~~~l~~l~~-~~~~~~~~~i~~ 134 (446)
T PRK14353 70 APD-AEIFVQK---------ERLGTAHAVLAAREALAG----GYGDVLVLYGDTPLITAETLARLRE-RLADGADVVVLG 134 (446)
T ss_pred CCC-ceEEEcC---------CCCCcHHHHHHHHHHHhc----cCCCEEEEeCCcccCCHHHHHHHHH-hHhcCCcEEEEE
Confidence 101 2222211 236999999999888752 257899999999 5554 5777777 445678888888
Q ss_pred EecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCC-
Q 018939 248 VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP- 326 (348)
Q Consensus 248 ~~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~- 326 (348)
.+..+ ...||.+.. ++|+|.++.|||...... ...+++++|+|+|+++.|..+++...+
T Consensus 135 ~~~~~--~~~~g~~~~-~~g~v~~~~ek~~~~~~~-----------------~~~~~~~~Giy~~~~~~l~~~l~~~~~~ 194 (446)
T PRK14353 135 FRAAD--PTGYGRLIV-KGGRLVAIVEEKDASDEE-----------------RAITLCNSGVMAADGADALALLDRVGND 194 (446)
T ss_pred EEeCC--CCcceEEEE-CCCeEEEEEECCCCChHH-----------------hhceEEEEEEEEEEHHHHHHHHHhhccc
Confidence 88654 567988887 578999999998643210 012578999999999888777765432
Q ss_pred --CCcchhhhhHHhccccC-Cee
Q 018939 327 --LSNDFGSEIIPASVKDH-NVQ 346 (348)
Q Consensus 327 --~~~d~~~diip~l~~~~-~v~ 346 (348)
....+.+++++.+++.. +++
T Consensus 195 ~~~~~~~~~d~~~~l~~~g~~v~ 217 (446)
T PRK14353 195 NAKGEYYLTDIVAIARAEGLRVA 217 (446)
T ss_pred CCCCcEeHHHHHHHHHHCCCeEE
Confidence 12345678899887653 344
No 54
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=6.8e-23 Score=197.25 Aligned_cols=230 Identities=20% Similarity=0.311 Sum_probs=171.2
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCC-chhHHHHHHHhccCCCCcc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFN-SFSLNRHLARSYNLGNGVN 168 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~-~~~l~~hl~r~y~~~~g~~ 168 (348)
|.++++|++|||-||||-.++...||+|+|||++ |||+|+|++|..+|+++|+|++... ...|+..|...+ .
T Consensus 7 ~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~-PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~------~ 79 (433)
T KOG1462|consen 7 MSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNK-PMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNI------D 79 (433)
T ss_pred hHHhhhheeecCCceechhhhhhcchhhcccCCc-ceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCC------c
Confidence 5679999999999999988999999999999999 9999999999999999999999874 345655554332 2
Q ss_pred cCCC--cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEE
Q 018939 169 FGDG--FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVS 246 (348)
Q Consensus 169 ~~~~--~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~ 246 (348)
.... .+++-...+. ..||+++++.....+. .++|||++||.+.++++..++++|+..++...++
T Consensus 80 l~~~~~~v~ip~~~~~--------d~gtadsLr~Iy~kik------S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slaml 145 (433)
T KOG1462|consen 80 LKKRPDYVEIPTDDNS--------DFGTADSLRYIYSKIK------SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAML 145 (433)
T ss_pred ccccccEEEeeccccc--------ccCCHHHHhhhhhhhc------cCCEEEEecccccCCCcHHHHHHHhccChhHhHH
Confidence 2111 2333222222 2799999999988874 4899999999999999999999999887766555
Q ss_pred EEecCCC---------CCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHH
Q 018939 247 CVPMDDC---------RASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVL 317 (348)
Q Consensus 247 ~~~~~~~---------~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl 317 (348)
..+...+ ..+.+.++.+++++.=.-|..... ...+...+.+.+|+.+|+.. .+..+.++.+|+|+.+++
T Consensus 146 i~~~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~~~~-d~~~~l~i~~slL~~~prlt-l~t~L~dahiY~~k~~v~ 223 (433)
T KOG1462|consen 146 IGNALSEVPIPGQKGKKKQARDVIGINEDTERLAYSSDSA-DEEEPLVIRKSLLWNHPRLT-LTTKLVDAHIYVFKHWVI 223 (433)
T ss_pred hccccccccccCcccccccccceeeeccccceeEEeecCC-cCCCceehhhhhhhcCCceE-EeccccceeeeeeHHHHH
Confidence 4432211 123455677777643334443322 22234577788899999874 466789999999999999
Q ss_pred HHHHHhhCCCCcchhhhhHHhccccCC
Q 018939 318 LNLLRSSYPLSNDFGSEIIPASVKDHN 344 (348)
Q Consensus 318 ~~ll~~~~~~~~d~~~diip~l~~~~~ 344 (348)
+. |+.. ++..+|..|++|++++.+.
T Consensus 224 d~-l~~~-~sisSfk~~f~P~lvkkQ~ 248 (433)
T KOG1462|consen 224 DL-LSEK-ESISSFKADFLPYLVKKQF 248 (433)
T ss_pred HH-HhcC-Ccceeecccccchhhhhhh
Confidence 85 4542 6788999999999998754
No 55
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.85 E-value=1.1e-20 Score=191.74 Aligned_cols=213 Identities=17% Similarity=0.262 Sum_probs=148.9
Q ss_pred CCeeEEEEeCCCCccCCCCCCC-CCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 91 KNVAAIILGGGAGTRLFPLTNR-RAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~-~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
|+|.+||||||.||||+|+|.. .||||+|+.|..|||++.++.+...++.+.+|+|+..+..+.+...... . .
T Consensus 4 ~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~--~----~ 77 (478)
T PRK15460 4 SKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQL--N----K 77 (478)
T ss_pred CceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhc--C----C
Confidence 3489999999999999999997 7999999966339999999999998888888889877655443222221 1 0
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCccccc-C-HHHHHHHHH---hcCCcEE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRM-D-YTEFLQKHI---DTKADIT 244 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~-d-~~~ll~~h~---~~~adit 244 (348)
.. ..++.+... .+||.|+..+...+.+..-..++-++|+++||+... + |.+.+.... +.+.-+|
T Consensus 78 ~~--~~ii~EP~~---------rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt 146 (478)
T PRK15460 78 LT--ENIILEPAG---------RNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVT 146 (478)
T ss_pred cc--ccEEecCCC---------CChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 01 133332221 579999887776664310011457899999997653 2 665555443 2355566
Q ss_pred EEEEecCCCCCCcceEEEECCC---------CcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHH
Q 018939 245 VSCVPMDDCRASDYGLMKIDRS---------GQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTD 315 (348)
Q Consensus 245 i~~~~~~~~~~~~~g~v~id~~---------g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~ 315 (348)
+...|... .+.|||++.++. ..|..|.|||+.+..+.|.- ...|++|+|||+|+.+
T Consensus 147 ~GI~Pt~P--eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~-------------~G~y~WNsGiF~~~a~ 211 (478)
T PRK15460 147 FGIVPDLP--ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVA-------------SGEYYWNSGMFLFRAG 211 (478)
T ss_pred EecCCCCC--CCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHH-------------cCCEEEecceeheeHH
Confidence 66666543 688999998752 27999999999877655532 2368999999999999
Q ss_pred HHHHHHHhhCCCCcchhhhh
Q 018939 316 VLLNLLRSSYPLSNDFGSEI 335 (348)
Q Consensus 316 vl~~ll~~~~~~~~d~~~di 335 (348)
+|+..++...|........+
T Consensus 212 ~~l~~~~~~~P~i~~~~~~~ 231 (478)
T PRK15460 212 RYLEELKKYRPDILDACEKA 231 (478)
T ss_pred HHHHHHHHHCHHHHHHHHHH
Confidence 99999988777544333333
No 56
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.84 E-value=2.3e-19 Score=166.38 Aligned_cols=188 Identities=20% Similarity=0.303 Sum_probs=132.0
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
|++.+||||||.|+||. +|+|+|++|+ |||+|+++.+.++++++|+|+++. +.+.+++. .+ +
T Consensus 1 m~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~~--~~i~~~~~-~~--------~ 62 (245)
T PRK05450 1 MKFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATDD--ERIADAVE-AF--------G 62 (245)
T ss_pred CceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECCc--HHHHHHHH-Hc--------C
Confidence 46889999999999992 6999999999 999999999999999999998864 55655553 22 1
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-ccc-cCHHHHHHHHHhcCCcEEEEEE
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDTKADITVSCV 248 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~-~d~~~ll~~h~~~~aditi~~~ 248 (348)
+.++...+. ++.||++... +...+. ....+.+++++||+ +++ ..+.++++.|..++.++++++.
T Consensus 63 ---~~v~~~~~~-------~~~gt~~~~~-~~~~~~---~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~ 128 (245)
T PRK05450 63 ---GEVVMTSPD-------HPSGTDRIAE-AAAKLG---LADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAV 128 (245)
T ss_pred ---CEEEECCCc-------CCCchHHHHH-HHHhcC---CCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeee
Confidence 233332221 2356765443 333331 11346799999999 555 4588999988877778887777
Q ss_pred ecCC----CCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHH
Q 018939 249 PMDD----CRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR 322 (348)
Q Consensus 249 ~~~~----~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~ 322 (348)
+..+ ...+.++++ +|++|+|..|.|||..+... ...+....++.+++|+|+|+++++..++.
T Consensus 129 ~~~~~~~~~~~~~~~v~-~d~~g~v~~~~e~~~~~~~~-----------~~~~~~~~~~~~~~Giy~~~~~~l~~~~~ 194 (245)
T PRK05450 129 PIHDAEEAFNPNVVKVV-LDADGRALYFSRAPIPYGRD-----------AFADSAPTPVYRHIGIYAYRRGFLRRFVS 194 (245)
T ss_pred ecCCHHHhcCcCCCEEE-eCCCCcEEEecCCCCCCCCC-----------ccccccCccccEEEEEEecCHHHHHHHHh
Confidence 7622 234557755 89999999999999644210 00000112478999999999999988765
No 57
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.83 E-value=6e-19 Score=163.01 Aligned_cols=183 Identities=21% Similarity=0.356 Sum_probs=129.2
Q ss_pred CeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhc-CCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINS-GFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 92 ~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~a-Gi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
++.+||||||.|+||. ||+|+||+|+ |||+|+++++..+ |+++|+|++++ +.+.+++. .+ +
T Consensus 1 ~~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~-~~--------~ 62 (239)
T cd02517 1 KVIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVE-SF--------G 62 (239)
T ss_pred CEEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHH-Hc--------C
Confidence 3679999999999993 7999999999 9999999999998 99999999874 45555553 22 1
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-ccc-cCHHHHHHHHHhc-CCcEEEEE
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDT-KADITVSC 247 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~-~d~~~ll~~h~~~-~aditi~~ 247 (348)
+.++...+. +..||++ +..++..+. ...+.|+|++||+ ++. .++..+++.|... +.++++++
T Consensus 63 ---~~~~~~~~~-------~~~gt~~-~~~~~~~~~----~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~ 127 (239)
T cd02517 63 ---GKVVMTSPD-------HPSGTDR-IAEVAEKLD----ADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLA 127 (239)
T ss_pred ---CEEEEcCcc-------cCchhHH-HHHHHHhcC----CCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEE
Confidence 333322221 1257775 555555442 1137899999998 554 5688999988766 78898888
Q ss_pred EecCCC----CCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHH
Q 018939 248 VPMDDC----RASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR 322 (348)
Q Consensus 248 ~~~~~~----~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~ 322 (348)
.+.++. ....|+ |.+|++|+|..|.|++..+..+ +.+ ...+.+++|+|+|++++|..+..
T Consensus 128 ~~~~~~~~~~~~~~~~-v~~~~~~~v~~~~~~~~~~~~~------------~~~--~~~~~~~~Giy~~~~~~~~~~~~ 191 (239)
T cd02517 128 TPISDEEELFNPNVVK-VVLDKDGYALYFSRSPIPYPRD------------SSE--DFPYYKHIGIYAYRRDFLLRFAA 191 (239)
T ss_pred EEcCCHHHccCCCCCE-EEECCCCCEEEecCCCCCCCCC------------CCC--CCceeEEEEEEEECHHHHHHHHh
Confidence 887542 123344 5678789999999876433110 000 01357999999999999988755
No 58
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=2.3e-19 Score=170.44 Aligned_cols=204 Identities=21% Similarity=0.309 Sum_probs=147.9
Q ss_pred CeeEEEEeCCCCccCCCCCC-CCCccceeeCCcchHHHHHHHHhHh-cCCCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 92 NVAAIILGGGAGTRLFPLTN-RRAKPAVPIGGNYRLIDIPMSNCIN-SGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 92 ~~~aIILAgG~GtRl~pLT~-~~PKpllpIgGk~pLId~~l~~l~~-aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
+|.+||||||.|||||||+. .+||+++++.|...|++..+..+.. .++++++|||+..+..+.....+.. ..
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~------~~ 74 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEI------DI 74 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhh------hh
Confidence 36799999999999999976 6999999997643899999999998 6789999999988765433222221 11
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCccccc--CHHHHHHHHH---hcCCcEE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRM--DYTEFLQKHI---DTKADIT 244 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~--d~~~ll~~h~---~~~adit 244 (348)
+...--++.+ .| ..||.|+..+.-.+.+ ..++.-++|+++||+... .|.+.++... +++.-+|
T Consensus 75 ~~~~~illEP------~g----RnTApAIA~aa~~~~~--~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVT 142 (333)
T COG0836 75 ENAAGIILEP------EG----RNTAPAIALAALSATA--EGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVT 142 (333)
T ss_pred ccccceEecc------CC----CCcHHHHHHHHHHHHH--hCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEE
Confidence 1100112222 22 4699999887766553 234557999999997654 3777766543 3566566
Q ss_pred EEEEecCCCCCCcceEEEECCC------CcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHH
Q 018939 245 VSCVPMDDCRASDYGLMKIDRS------GQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLL 318 (348)
Q Consensus 245 i~~~~~~~~~~~~~g~v~id~~------g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~ 318 (348)
+...|... .+.|||++..+. .+|.+|.|||+.+..++|.- ...|++|+|+|+|+..++.
T Consensus 143 fGI~Pt~P--eTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~-------------sG~y~WNSGmF~Fra~~~l 207 (333)
T COG0836 143 FGIPPTRP--ETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVE-------------SGEYLWNSGMFLFRASVFL 207 (333)
T ss_pred EecCCCCC--ccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHH-------------cCceEeeccceEEEHHHHH
Confidence 66666543 688999998652 38999999999887766543 2468999999999999999
Q ss_pred HHHHhhCCCC
Q 018939 319 NLLRSSYPLS 328 (348)
Q Consensus 319 ~ll~~~~~~~ 328 (348)
+.++...|..
T Consensus 208 ~e~~~~~P~i 217 (333)
T COG0836 208 EELKKHQPDI 217 (333)
T ss_pred HHHHhhCcHH
Confidence 9888776653
No 59
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=5.2e-18 Score=155.30 Aligned_cols=176 Identities=16% Similarity=0.317 Sum_probs=121.9
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEc-cCCchhHHHHHHHhccCCCCccc
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMT-QFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt-~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
.-|+|||||||.|+||+| +.||+|+.++|+ ++|+|++++|.++|+++++||+ ++..+-+...+ +.|+|.
T Consensus 2 ~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l-~~~~~~----- 71 (239)
T COG1213 2 HPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFL-KKYPFN----- 71 (239)
T ss_pred CceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHH-hcCCcc-----
Confidence 458999999999999988 899999999999 9999999999999999999999 77766555555 344221
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEE-E
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSC-V 248 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~-~ 248 (348)
.+++...... . .+|+.++..+.+++. +.|++++|||+|...+.+ ...+..+...++. .
T Consensus 72 ----~~iv~N~~y~--k-----tN~~~Sl~~akd~~~-------~~fii~~sD~vye~~~~e---~l~~a~~~~li~d~~ 130 (239)
T COG1213 72 ----AKIVINSDYE--K-----TNTGYSLLLAKDYMD-------GRFILVMSDHVYEPSILE---RLLEAPGEGLIVDRR 130 (239)
T ss_pred ----eEEEeCCCcc--c-----CCceeEEeeehhhhc-------CcEEEEeCCEeecHHHHH---HHHhCcCCcEEEecc
Confidence 3444332221 1 357899999998884 569999999999877432 2233222222222 2
Q ss_pred ecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHH
Q 018939 249 PMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR 322 (348)
Q Consensus 249 ~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~ 322 (348)
|.... ..+-..++ +++|+|..+..+-... ....+|++.|+++++....+
T Consensus 131 ~~~~~-~~ea~kv~-~e~G~i~~igK~l~e~-----------------------~~e~iGi~~l~~~i~~~~~~ 179 (239)
T COG1213 131 PRYVG-VEEATKVK-DEGGRIVEIGKDLTEY-----------------------DGEDIGIFILSDSIFEDTYE 179 (239)
T ss_pred ccccc-cCceeEEE-ecCCEEehhcCCcccc-----------------------cceeeeeEEechHHHHHHHH
Confidence 11110 11122344 4789999987765421 23589999999998877654
No 60
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.76 E-value=1.5e-16 Score=146.94 Aligned_cols=178 Identities=19% Similarity=0.397 Sum_probs=122.5
Q ss_pred CeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhc-CCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINS-GFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 92 ~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~a-Gi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
++.+||||+|.|+||. +|+|+|++|+ |||+|+++.+.++ ++++|+|+++. +.+.+++. .+ +
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~-~~--------~ 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVE-AF--------G 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHH-Hc--------C
Confidence 5789999999999992 5999999999 9999999999998 89999999964 55666653 23 1
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-c-cccCHHHHHHHHHhcC-CcEEEEE
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-L-YRMDYTEFLQKHIDTK-ADITVSC 247 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l-~~~d~~~ll~~h~~~~-aditi~~ 247 (348)
++++...+. +..|++ .+..++..+ ..+.|+|+.||+ + ...++.++++.|...+ .++++++
T Consensus 64 ---~~v~~~~~~-------~~~g~~-~~~~a~~~~------~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~ 126 (238)
T PRK13368 64 ---GKVVMTSDD-------HLSGTD-RLAEVMLKI------EADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLC 126 (238)
T ss_pred ---CeEEecCcc-------CCCccH-HHHHHHHhC------CCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEE
Confidence 222222111 124666 455555443 357899999998 3 3566899999887654 3566666
Q ss_pred EecCCC-C---CCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHH
Q 018939 248 VPMDDC-R---ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNL 320 (348)
Q Consensus 248 ~~~~~~-~---~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~l 320 (348)
.+.+.. + +..+++ .++++|+|..|.|+|...... + ....+++++|+|+|++++|..+
T Consensus 127 ~~~~~~~~~~~p~~~~~-~~~~~g~v~~~~~~~~~~~~~--------------~-~~~~~~~n~giy~~~~~~l~~~ 187 (238)
T PRK13368 127 APISTEEEFESPNVVKV-VVDKNGDALYFSRSPIPSRRD--------------G-ESARYLKHVGIYAFRRDVLQQF 187 (238)
T ss_pred EEcCCHHHhcCcCCCEE-EECCCCCEEEeeCCCCCCCCC--------------C-CCCceeEEEEEEEeCHHHHHHH
Confidence 665431 1 233444 556779999999765321100 0 0113578999999999999874
No 61
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=1.3e-16 Score=141.43 Aligned_cols=193 Identities=17% Similarity=0.247 Sum_probs=132.1
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
|.|||||||.|||+.|||...||+|+.|.|+ |||++.++.|..+||++|+||+|+..+++ +.|.+.|+
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdKy~---------- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDKYD---------- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHhcC----------
Confidence 5799999999999999999999999999999 99999999999999999999999998875 67777761
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEecCC
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDD 252 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~~~ 252 (348)
|.++....-. .-....+++.+.+++ ++..|+++|..+..++ ...+. .+..-..+-...
T Consensus 69 -vtLvyN~kY~-------~yNn~ySlyla~d~l--------~ntYiidsDnyl~kNi---f~~~~---~~S~Yfav~~~~ 126 (231)
T COG4750 69 -VTLVYNPKYR-------EYNNIYSLYLARDFL--------NNTYIIDSDNYLTKNI---FLTKE---SHSKYFAVYRSG 126 (231)
T ss_pred -eEEEeCchHH-------hhhhHHHHHHHHHHh--------cccEEeccchHhhhhh---hhcCc---ccceEEEEEecC
Confidence 5555432221 124678899999888 4778999999775553 21222 112222222222
Q ss_pred CCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHH---HHHHHHhhCCC--
Q 018939 253 CRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDV---LLNLLRSSYPL-- 327 (348)
Q Consensus 253 ~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~v---l~~ll~~~~~~-- 327 (348)
.++--++..+.+|+|+.+.-... +.++-+|+-.|+... +..+++..+-.
T Consensus 127 --~tnEw~l~~~~~~ki~~v~Igg~------------------------~~~imsG~sff~~~~~~ki~~ll~~~yv~~e 180 (231)
T COG4750 127 --KTNEWLLIYNSDGKITRVDIGGL------------------------NGYIMSGISFFDAQFSNKIKKLLKEYYVRLE 180 (231)
T ss_pred --CCceeEEEEcCCCcEEEEEecCc------------------------ccceEeeeeeecchhHHHHHHHHHHHHhCch
Confidence 33444678899999998854321 246788998888654 44455544311
Q ss_pred -CcchhhhhHHhccccCCe
Q 018939 328 -SNDFGSEIIPASVKDHNV 345 (348)
Q Consensus 328 -~~d~~~diip~l~~~~~v 345 (348)
.--+..++.-.-++++++
T Consensus 181 ~~k~yWd~v~~~ni~~l~m 199 (231)
T COG4750 181 NRKLYWDTVPMENIKELDM 199 (231)
T ss_pred hhhHHHHHHHHHHHHHHhH
Confidence 122334444444444443
No 62
>PLN02917 CMP-KDO synthetase
Probab=99.70 E-value=1.6e-15 Score=145.62 Aligned_cols=187 Identities=19% Similarity=0.215 Sum_probs=123.2
Q ss_pred CCCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcc
Q 018939 89 DPKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVN 168 (348)
Q Consensus 89 ~~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~ 168 (348)
-++++.+||||+|.++||. +|+|+|++|+ |||+|+++.+..++..+.+|+ ..+.+.+.+++. .+
T Consensus 44 ~~~~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~VVV-~~~~e~I~~~~~-~~------- 107 (293)
T PLN02917 44 FRSRVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHIVV-ATDDERIAECCR-GF------- 107 (293)
T ss_pred cCCcEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEEEE-ECChHHHHHHHH-Hc-------
Confidence 3467899999999999992 5999999999 999999999998765444333 345566666553 22
Q ss_pred cCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-cc-cCHHHHHHHHHhcCCcEEEE
Q 018939 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-YR-MDYTEFLQKHIDTKADITVS 246 (348)
Q Consensus 169 ~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~~-~d~~~ll~~h~~~~aditi~ 246 (348)
+ ++++...+.. ..||+++ ..++..++ ...+.++++.||+. .+ ..+..+++.+.+. .+++++
T Consensus 108 -~---v~vi~~~~~~-------~~GT~~~-~~a~~~l~----~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~ 170 (293)
T PLN02917 108 -G---ADVIMTSESC-------RNGTERC-NEALKKLE----KKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFS 170 (293)
T ss_pred -C---CEEEeCCccc-------CCchHHH-HHHHHhcc----CCCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEE
Confidence 1 2333222211 2477766 46766663 13578999999994 44 4588899888643 444443
Q ss_pred --EEecCCCCCCcceEEE--ECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHH
Q 018939 247 --CVPMDDCRASDYGLMK--IDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNL 320 (348)
Q Consensus 247 --~~~~~~~~~~~~g~v~--id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~l 320 (348)
+.+...+.+.+||.++ .|++|+++.|...+-.+... ..+.+...+..++|+|+|+.+.|..+
T Consensus 171 t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd------------~~~~~~~i~~~n~Giy~f~~~~L~~l 236 (293)
T PLN02917 171 TAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKS------------GKVNPQFPYLLHLGIQSYDAKFLKIY 236 (293)
T ss_pred EEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCC------------cccccccceEEEEEEEEeCHHHHHHH
Confidence 3333333467899887 68889988887654322110 00112234788999999999999844
No 63
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=9.8e-15 Score=148.29 Aligned_cols=233 Identities=16% Similarity=0.285 Sum_probs=168.0
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHH-hccCCCCcc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLAR-SYNLGNGVN 168 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r-~y~~~~g~~ 168 (348)
....+||+||.-.-+||+|+|..+|+.|+|+.+- |||+|.+++|..+|+++++|++.-+..++.+|+.+ .|... ..
T Consensus 22 ~~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNV-pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~sew~~~--~~ 98 (673)
T KOG1461|consen 22 EHRLQAILLADSFETRFRPLTLEKPRVLLPLANV-PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSEWYLP--MS 98 (673)
T ss_pred ccceEEEEEeccchhcccccccCCCceEeeecCc-hHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhcccccc--cc
Confidence 3458999999999999999999999999999999 99999999999999999999999999999999986 56322 11
Q ss_pred cCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhc-----CCcE
Q 018939 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDT-----KADI 243 (348)
Q Consensus 169 ~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~-----~adi 243 (348)
| .+..+... . ....+|++|..-. +.-.+.+|++++||++.++++.++++.|+.. ++-+
T Consensus 99 ~---~v~ti~s~-~--------~~S~GDamR~id~-----k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iM 161 (673)
T KOG1461|consen 99 F---IVVTICSG-E--------SRSVGDAMRDIDE-----KQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIM 161 (673)
T ss_pred c---eEEEEcCC-C--------cCcHHHHHHHHHh-----cceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceE
Confidence 1 13322211 1 2467888886542 2234689999999999999999999999543 4557
Q ss_pred EEEEEecCCCC-CCcceEEEECC-CCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHH
Q 018939 244 TVSCVPMDDCR-ASDYGLMKIDR-SGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL 321 (348)
Q Consensus 244 ti~~~~~~~~~-~~~~g~v~id~-~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll 321 (348)
||++.+.. .+ ..+--++.+|. +.+++.+.+-.. ..-.++++.+++.-.+.. .....+.+++|-+++++++..+-
T Consensus 162 Tmv~k~~s-t~~~~~~~~~avd~~T~~ll~yq~~~~--~~~~~~l~~sl~d~~~~v-~vr~DL~dc~IdIcS~~V~sLF~ 237 (673)
T KOG1461|consen 162 TMVFKESS-TRETTEQVVIAVDSRTSRLLHYQKCVR--EKHDIQLDLSLFDSNDEV-EVRNDLLDCQIDICSPEVLSLFT 237 (673)
T ss_pred EEEEeccc-cccCCcceEEEEcCCcceEEeehhhcc--cccccccCHHHhcCCCcE-EEEccCCCceeeEecHhHHHHhh
Confidence 88777764 22 23334566675 579999976111 112345566666544332 34578899999999999998554
Q ss_pred Hhh-CCCCcchhhhhHHhccccCCee
Q 018939 322 RSS-YPLSNDFGSEIIPASVKDHNVQ 346 (348)
Q Consensus 322 ~~~-~~~~~d~~~diip~l~~~~~v~ 346 (348)
++. |....||.+.++-.-+-.++++
T Consensus 238 dNFDyq~r~DfV~GvL~~dilg~kI~ 263 (673)
T KOG1461|consen 238 DNFDYQTRDDFVRGVLVDDILGYKIH 263 (673)
T ss_pred hcccceehhhhhhhhhhhhhcCCeEE
Confidence 432 2356788888776555455544
No 64
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.63 E-value=3e-15 Score=129.73 Aligned_cols=122 Identities=25% Similarity=0.332 Sum_probs=94.6
Q ss_pred EEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcE
Q 018939 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFV 174 (348)
Q Consensus 95 aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v 174 (348)
+||||||.|+||. .||+|+||+|+ |||+|+++.+.++++++|+|++++ +.+..++. .+ .+
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~-~~-----------~~ 60 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLE-RY-----------GI 60 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHT-TT-----------TS
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHh-cc-----------Cc
Confidence 6999999999994 49999999999 999999999999999999999998 33444432 11 14
Q ss_pred EEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCccc-cc-CHHHHHHHHHhcCCcEEEEEEe
Q 018939 175 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLY-RM-DYTEFLQKHIDTKADITVSCVP 249 (348)
Q Consensus 175 ~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~-~~-d~~~ll~~h~~~~aditi~~~~ 249 (348)
+++.... |..|++++++.++..+. ..++|+|++||+.+ +. .+..+++.+.+++.++++....
T Consensus 61 ~~v~~~~--------~~~G~~~sl~~a~~~~~-----~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~~ 124 (160)
T PF12804_consen 61 KVVVDPE--------PGQGPLASLLAALSQLP-----SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVFR 124 (160)
T ss_dssp EEEE-ST--------SSCSHHHHHHHHHHTST-----TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEET
T ss_pred eEEEecc--------ccCChHHHHHHHHHhcc-----cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEEC
Confidence 5554332 22699999999987763 46999999999954 54 4889999988888887665554
No 65
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.60 E-value=1.1e-14 Score=130.72 Aligned_cols=127 Identities=24% Similarity=0.283 Sum_probs=97.0
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
|.+||||||.|+||.+ .||+++|++|+ |||+|+++++..+++++|+|+++++.+.+..++...+
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 6799999999999954 79999999999 9999999999999999999999987777766664211
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCccc--ccCHHHHHHHHHhcCCcEEEEEEec
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLY--RMDYTEFLQKHIDTKADITVSCVPM 250 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~--~~d~~~ll~~h~~~~aditi~~~~~ 250 (348)
..+.. .. ..|.+.++..++..+. ..++|+|++||+.+ ...+..+++.+...+.....++.+.
T Consensus 65 -~~~~~-~~---------g~G~~~~l~~al~~~~-----~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~ 128 (183)
T TIGR00454 65 -KDYKN-AS---------GKGYIEDLNECIGELY-----FSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIPK 128 (183)
T ss_pred -cEEEe-cC---------CCCHHHHHHHHhhccc-----CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEecc
Confidence 12221 11 1578888888876542 35799999999954 4558889998877776666666654
Q ss_pred C
Q 018939 251 D 251 (348)
Q Consensus 251 ~ 251 (348)
.
T Consensus 129 ~ 129 (183)
T TIGR00454 129 E 129 (183)
T ss_pred c
Confidence 3
No 66
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.55 E-value=5.6e-14 Score=123.75 Aligned_cols=123 Identities=21% Similarity=0.384 Sum_probs=91.1
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
+.+||||||.|+||++ ||+|+|++|+ |||+|+++.+.++++++|+|+++.+...+..++. . ++
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~-~--------~~-- 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALA-G--------LP-- 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhc-C--------CC--
Confidence 4689999999999964 9999999999 9999999999999999999999987654433221 1 11
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-ccc-cCHHHHHHHHHhcCCcEEE
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDTKADITV 245 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~-~d~~~ll~~h~~~~aditi 245 (348)
+.++.... +..|++++++.++..+.. ..+.++|++||+ +.. ..+..+++.+...++++++
T Consensus 64 -~~~~~~~~--------~~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~v~ 125 (186)
T cd04182 64 -VVVVINPD--------WEEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAGIVA 125 (186)
T ss_pred -eEEEeCCC--------hhhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 33333221 126899999999887631 368999999999 444 4578888887655555443
No 67
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.51 E-value=3.3e-13 Score=122.69 Aligned_cols=173 Identities=21% Similarity=0.375 Sum_probs=120.3
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcC-CCeEEEEccCCchhHHHHHHHhccCCCCcccCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGD 171 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aG-i~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~ 171 (348)
+.+||||||.|+||++ ..||+|+|++|+ |||+|+++++..++ +++|+|+++.........+ +.+.. .
T Consensus 1 ~~~vILAaG~s~R~~~---~~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~-~~~~~------~- 68 (218)
T cd02516 1 VAAIILAAGSGSRMGA---DIPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKEL-AKYGL------S- 68 (218)
T ss_pred CEEEEECCcccccCCC---CCCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHH-Hhccc------C-
Confidence 3589999999999954 379999999999 99999999999976 8999999988765444333 11101 1
Q ss_pred CcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-cccc-CHHHHHHHHHhcCCcEEEEEEe
Q 018939 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRM-DYTEFLQKHIDTKADITVSCVP 249 (348)
Q Consensus 172 ~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~-d~~~ll~~h~~~~aditi~~~~ 249 (348)
..+.++... .+...+++.++..+++ ...+.++++.||+ +++. .+..+++.+.+.+ ..+...+
T Consensus 69 ~~~~~~~~~-----------~~~~~si~~al~~~~~---~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~ 132 (218)
T cd02516 69 KVVKIVEGG-----------ATRQDSVLNGLKALPD---ADPDIVLIHDAARPFVSPELIDRLIDALKEYG--AAIPAVP 132 (218)
T ss_pred CCeEEECCc-----------hHHHHHHHHHHHhccc---CCCCEEEEccCcCCCCCHHHHHHHHHHHhhCC--cEEEEEe
Confidence 113333211 2457889999877631 1357899999999 4554 4888898886544 3444555
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhh
Q 018939 250 MDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSS 324 (348)
Q Consensus 250 ~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~ 324 (348)
..+ ++...|++|.|.++.|..+. ....++ ++|+.+.|..++...
T Consensus 133 ~~~------~~~~~~~~g~~~~~~~r~~~------------------------~~~~~P-~~f~~~~~~~~~~~~ 176 (218)
T cd02516 133 VTD------TIKRVDDDGVVVETLDREKL------------------------WAAQTP-QAFRLDLLLKAHRQA 176 (218)
T ss_pred ccc------cEEEecCCCceeecCChHHh------------------------hhhcCC-CcccHHHHHHHHHHH
Confidence 533 23446778999888774221 235666 999999999988653
No 68
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.51 E-value=3.5e-12 Score=118.91 Aligned_cols=189 Identities=19% Similarity=0.211 Sum_probs=121.9
Q ss_pred EEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcE
Q 018939 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFV 174 (348)
Q Consensus 95 aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v 174 (348)
+||+|+|.|+|| .+|+|++++|+ |||.|+++++..+++++|+|++.. +.+.+++. .+ + +
T Consensus 2 ~iIpA~g~s~R~------~~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~~--~~i~~~~~-~~--------g---~ 60 (238)
T TIGR00466 2 VIIPARLASSRL------PGKPLEDIFGK-PMIVHVAENANESGADRCIVATDD--ESVAQTCQ-KF--------G---I 60 (238)
T ss_pred EEEecCCCCCCC------CCCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeCH--HHHHHHHH-Hc--------C---C
Confidence 799999999999 27999999999 999999999999899999999864 34555442 22 1 2
Q ss_pred EEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-cccc-CHHHHHHHHHhcCCcEEEEEEecCC
Q 018939 175 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRM-DYTEFLQKHIDTKADITVSCVPMDD 252 (348)
Q Consensus 175 ~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~-d~~~ll~~h~~~~aditi~~~~~~~ 252 (348)
+++...+.. ..|+. .+..+...+. ....+.++++.||. +... .+..+++.+.+.+.+++.++.+..+
T Consensus 61 ~~v~~~~~~-------~~Gt~-r~~~~~~~l~---~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d 129 (238)
T TIGR00466 61 EVCMTSKHH-------NSGTE-RLAEVVEKLA---LKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHD 129 (238)
T ss_pred EEEEeCCCC-------CChhH-HHHHHHHHhC---CCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 333211111 12433 3333333331 01346899999999 4554 4788888886666788888888754
Q ss_pred CC---CCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHh
Q 018939 253 CR---ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS 323 (348)
Q Consensus 253 ~~---~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~ 323 (348)
.. ..+...+..|.+|++.-|+..+....- +.......|+ ..+++...|+|.|++++|..+...
T Consensus 130 ~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R-----~~~~~~~tpq---~~~~~~h~Giy~~~~~~L~~~~~~ 195 (238)
T TIGR00466 130 AEEAFNPNAVKVVLDSQGYALYFSRSLIPFDR-----DFFAKRQTPV---GDNLLRHIGIYGYRAGFIEEYVAW 195 (238)
T ss_pred HHHccCCCceEEEeCCCCeEEEecCCCCCCCC-----Cccccccccc---ccceeEEEEEEeCCHHHHHHHHhC
Confidence 21 122334445778998888775432110 0000111222 123677999999999999998754
No 69
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.50 E-value=1.1e-12 Score=119.39 Aligned_cols=183 Identities=19% Similarity=0.333 Sum_probs=117.3
Q ss_pred CeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcC-CCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 92 ~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aG-i~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
++.+||||||.|+||. .|+|+|++|+ |||+|+++.+..++ +++|+|++. .+.+.+++. .+ +.
T Consensus 1 ~~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~-~~----~~--- 63 (223)
T cd02513 1 KILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVSTD--DEEIAEVAR-KY----GA--- 63 (223)
T ss_pred CeEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHH-Hh----CC---
Confidence 4679999999999992 4999999999 99999999999987 788888773 344555443 22 11
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-c-ccCHHHHHHHHHhcCCcEEEEEE
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-Y-RMDYTEFLQKHIDTKADITVSCV 248 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~-~~d~~~ll~~h~~~~aditi~~~ 248 (348)
.+.++...... .+ ..|+.++++.++..++.. ....+.++++.||+. . ...+.++++.+...+++.++.+.
T Consensus 64 --~~~~~~~~~~~--~~---~~~~~~~i~~~l~~l~~~-~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~ 135 (223)
T cd02513 64 --EVPFLRPAELA--TD---TASSIDVILHALDQLEEL-GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVT 135 (223)
T ss_pred --CceeeCChHHC--CC---CCCcHHHHHHHHHHHHHh-CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 01111111000 00 147899999999887531 012378999999993 3 35689999999887888888777
Q ss_pred ecCCCCCCcceEEEECCCC-cEEEEEeCC--CCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHH
Q 018939 249 PMDDCRASDYGLMKIDRSG-QIIQFAEKP--KGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNL 320 (348)
Q Consensus 249 ~~~~~~~~~~g~v~id~~g-~V~~~~EKp--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~l 320 (348)
+..+ .. +..+..+++| .++.+.++. ...+. ..-+..++|+|+++++.+.+.
T Consensus 136 ~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~q~~------------------~~~~~~n~~~y~~~~~~~~~~ 189 (223)
T cd02513 136 EFHR--FP-WRALGLDDNGLEPVNYPEDKRTRRQDL------------------PPAYHENGAIYIAKREALLES 189 (223)
T ss_pred ecCc--Cc-HHheeeccCCceeccCcccccCCcCCC------------------hhHeeECCEEEEEEHHHHHhc
Confidence 7654 22 3323333333 222222211 11111 123567899999999988663
No 70
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.49 E-value=6.1e-13 Score=121.25 Aligned_cols=165 Identities=18% Similarity=0.310 Sum_probs=114.1
Q ss_pred EEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhc-CCCeEEEEccCCc-hhHHHHHHHhccCCCCcccCCC
Q 018939 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINS-GFNKIFIMTQFNS-FSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 95 aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~a-Gi~~IvVvt~~~~-~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
+||||||.|+||. ...||+|++++|+ |||+|+++++..+ ++++|+|+++... +.+..++. .. .
T Consensus 2 aiIlAaG~s~R~~---~~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~------~~-----~ 66 (217)
T TIGR00453 2 AVIPAAGRGTRFG---SGVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLV------AR-----A 66 (217)
T ss_pred EEEEcCcccccCC---CCCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhh------cC-----C
Confidence 7999999999995 3479999999999 9999999999998 7999999998764 22322221 00 0
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-cccc-CHHHHHHHHHhcCCcEEEEEEec
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRM-DYTEFLQKHIDTKADITVSCVPM 250 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~-d~~~ll~~h~~~~aditi~~~~~ 250 (348)
.+.++... .+..++++.++..++ ..+.++++.||+ +++. .+..+++.+.+. ++++++.+.
T Consensus 67 ~~~~~~~~-----------~~~~~sl~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~ 128 (217)
T TIGR00453 67 VPKIVAGG-----------DTRQDSVRNGLKALK-----DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPV 128 (217)
T ss_pred cEEEeCCC-----------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEec
Confidence 13333211 135678888877651 357999999999 4454 478888877653 445556665
Q ss_pred CCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHh
Q 018939 251 DDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS 323 (348)
Q Consensus 251 ~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~ 323 (348)
.+ +++.+|++|.|..+.|+... +.+.+ .|+|+...|..++..
T Consensus 129 ~~------~v~~~~~~g~~~~~~~r~~~------------------------~~~~~-p~~f~~~~l~~~~~~ 170 (217)
T TIGR00453 129 AD------TLKRVEADGFIVETVDREGL------------------------WAAQT-PQAFRTELLKKALAR 170 (217)
T ss_pred cc------eEEEEcCCCceeecCChHHe------------------------EEEeC-CCcccHHHHHHHHHH
Confidence 43 45555777888877663211 23344 699999999888754
No 71
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.49 E-value=2.5e-13 Score=120.47 Aligned_cols=123 Identities=19% Similarity=0.293 Sum_probs=91.5
Q ss_pred EEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcE
Q 018939 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFV 174 (348)
Q Consensus 95 aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v 174 (348)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.++++++|+|++++..+.+..++.+.+ + +
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~~~--------~---v 64 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLANHS--------N---I 64 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhccCC--------C---e
Confidence 7999999999995 58999999999 9999999999999999999999988765444432111 1 4
Q ss_pred EEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-ccc-cCHHHHHHHHHhcCCcEEEEE
Q 018939 175 EVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDTKADITVSC 247 (348)
Q Consensus 175 ~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~-~d~~~ll~~h~~~~aditi~~ 247 (348)
.++.... |..|++++++.++.. . ...+.++|++||+ ++. ..+..+++.+...+.++++..
T Consensus 65 ~~v~~~~--------~~~g~~~si~~~l~~-~----~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~ 126 (188)
T TIGR03310 65 TLVHNPQ--------YAEGQSSSIKLGLEL-P----VQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVPL 126 (188)
T ss_pred EEEECcC--------hhcCHHHHHHHHhcC-C----CCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEee
Confidence 4443221 235889999988762 1 1358999999999 444 357888888876666655543
No 72
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.49 E-value=6.4e-13 Score=122.16 Aligned_cols=171 Identities=20% Similarity=0.301 Sum_probs=114.6
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcC-CCeEEEEccCCc-hhHHHHHHHhccCCCCc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNS-FSLNRHLARSYNLGNGV 167 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aG-i~~IvVvt~~~~-~~l~~hl~r~y~~~~g~ 167 (348)
++++.+||||||.|+|| ....||+|++++|+ |||+|+++++..++ +++|+|+++... +.+...+. ..
T Consensus 1 ~~~~~~iILAaG~s~R~---g~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~-----~~-- 69 (227)
T PRK00155 1 MMMVYAIIPAAGKGSRM---GADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLL-----AK-- 69 (227)
T ss_pred CCceEEEEEcCcccccc---CCCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhh-----cc--
Confidence 45688999999999999 34589999999999 99999999999865 899999998765 22322211 00
Q ss_pred ccCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-cccc-CHHHHHHHHHhcCCcEEE
Q 018939 168 NFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRM-DYTEFLQKHIDTKADITV 245 (348)
Q Consensus 168 ~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~-d~~~ll~~h~~~~aditi 245 (348)
. ..+.++... .+.+++++.++..++ ..+.++++.||+ ++.. .+..+++.+.+.+ ..+
T Consensus 70 --~-~~~~~~~~~-----------~~~~~sv~~~l~~~~-----~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~ 128 (227)
T PRK00155 70 --D-PKVTVVAGG-----------AERQDSVLNGLQALP-----DDDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAI 128 (227)
T ss_pred --C-CceEEeCCc-----------chHHHHHHHHHHhCC-----CCCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEE
Confidence 0 113332210 246899999987763 357899999999 4444 4889998876553 444
Q ss_pred EEEecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHh
Q 018939 246 SCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS 323 (348)
Q Consensus 246 ~~~~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~ 323 (348)
+..+..+. +. .++++|.+..+.+ ..+ ....-+.|+|+.+.|..++..
T Consensus 129 ~~~~~~~~----~~--~v~~~g~~~~~~~---r~~----------------------~~~~~~p~~f~~~~l~~~~~~ 175 (227)
T PRK00155 129 LAVPVKDT----IK--RSDDGGGIVDTPD---RSG----------------------LWAAQTPQGFRIELLREALAR 175 (227)
T ss_pred EEEecccc----EE--EEcCCCceeecCC---hHH----------------------heeeeCCccchHHHHHHHHHH
Confidence 55555431 22 2355677665522 111 122334799999999988754
No 73
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.44 E-value=3e-12 Score=118.20 Aligned_cols=171 Identities=19% Similarity=0.241 Sum_probs=110.6
Q ss_pred CeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhc-CCCeEEEEccCCchh-HHHHHHHhccCCCCccc
Q 018939 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINS-GFNKIFIMTQFNSFS-LNRHLARSYNLGNGVNF 169 (348)
Q Consensus 92 ~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~a-Gi~~IvVvt~~~~~~-l~~hl~r~y~~~~g~~~ 169 (348)
++.+||||||.|+||. ...||++++++|+ |||.|+++++.++ .+++|+|+++..... +.+.+ +.|.+ .
T Consensus 2 ~~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~-~~~~~----~- 71 (230)
T PRK13385 2 NYELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLM-KQLNV----A- 71 (230)
T ss_pred ceEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHH-HhcCc----C-
Confidence 4789999999999993 4579999999999 9999999999986 489999999765422 22222 23311 0
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-ccccC-HHHHHHHHHhcCCcEEEEE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHIDTKADITVSC 247 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~d-~~~ll~~h~~~~aditi~~ 247 (348)
...++++... .+..++++.++..++ ..+.++|+.||. +...+ +..+++.+.+.++ .++.
T Consensus 72 -~~~~~~v~~g-----------~~r~~sv~~gl~~~~-----~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~--~~~~ 132 (230)
T PRK13385 72 -DQRVEVVKGG-----------TERQESVAAGLDRIG-----NEDVILVHDGARPFLTQDIIDRLLEGVAKYGA--AICA 132 (230)
T ss_pred -CCceEEcCCC-----------chHHHHHHHHHHhcc-----CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCc--EEEE
Confidence 1123433211 234589999987763 246789999999 45554 7888888776554 3444
Q ss_pred EecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHh
Q 018939 248 VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS 323 (348)
Q Consensus 248 ~~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~ 323 (348)
.+..+ .++..++|.+.+..++ + ..+..-+.|.|+.+.|.+..+.
T Consensus 133 ~~~~d-------ti~~~~~~~~~~~i~r---~----------------------~~~~~qtpq~f~~~~l~~~~~~ 176 (230)
T PRK13385 133 VEVKD-------TVKRVKDKQVIETVDR---N----------------------ELWQGQTPQAFELKILQKAHRL 176 (230)
T ss_pred Eeccc-------eEEEEcCCeeEeccCH---H----------------------HHhhhcCCceeeHHHHHHHHHH
Confidence 44432 2333334655443221 1 1223345789999888887663
No 74
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.42 E-value=1.9e-12 Score=114.52 Aligned_cols=116 Identities=19% Similarity=0.269 Sum_probs=86.5
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
+.+||||||.|+||++ ||+++|++|+ |||+|+++.+... +++|+|++++.... . ..+ +
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~----~-~~~--------~-- 58 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER----Y-ALL--------G-- 58 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH----H-hhc--------C--
Confidence 4689999999999953 9999999999 9999999999988 89999999987543 1 111 1
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-cccC-HHHHHHHHHhcCCcEEEE
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-YRMD-YTEFLQKHIDTKADITVS 246 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~~~d-~~~ll~~h~~~~aditi~ 246 (348)
++++.... |..|+.++++.++..++ .+.++|+.||+. .+.+ +..+++.+ ..+.++++.
T Consensus 59 -~~~v~~~~--------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~ 118 (181)
T cd02503 59 -VPVIPDEP--------PGKGPLAGILAALRAAP------ADWVLVLACDMPFLPPELLERLLAAA-EEGADAVVP 118 (181)
T ss_pred -CcEeeCCC--------CCCCCHHHHHHHHHhcC------CCeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCEEEE
Confidence 33443222 23689999999987663 589999999994 4544 67777766 445555443
No 75
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.39 E-value=8.2e-12 Score=123.93 Aligned_cols=154 Identities=18% Similarity=0.299 Sum_probs=109.6
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcC-CCeEEEEccCCchhHHHHHHHhccCCCCcc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNSFSLNRHLARSYNLGNGVN 168 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aG-i~~IvVvt~~~~~~l~~hl~r~y~~~~g~~ 168 (348)
|+++.+||||||.|+|| +...||++++++|+ |||+|.++.+.+++ +++|+|++++....+.+.+.. ...
T Consensus 3 mm~v~aIILAAG~GsRm---g~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~------~~~ 72 (378)
T PRK09382 3 MSDISLVIVAAGRSTRF---SAEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALP------EIK 72 (378)
T ss_pred CCcceEEEECCCCCccC---CCCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcc------cCC
Confidence 57789999999999999 45689999999999 99999999999987 799999998765443332211 111
Q ss_pred cCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-ccccC-HHHHHHHHHhcCCcEEEE
Q 018939 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHIDTKADITVS 246 (348)
Q Consensus 169 ~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~d-~~~ll~~h~~~~aditi~ 246 (348)
.+.++... .+..++++.++..++ .+.++|..||. +++.+ +..+++.+.+ .++++.
T Consensus 73 ----~v~~v~gG-----------~~r~~SV~~gL~~l~------~d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~ 129 (378)
T PRK09382 73 ----FVTLVTGG-----------ATRQESVRNALEALD------SEYVLIHDAARPFVPKELIDRLIEALDK--ADCVLP 129 (378)
T ss_pred ----eEEEeCCC-----------chHHHHHHHHHHhcC------CCeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEE
Confidence 13333211 246789999988773 37899999998 45544 6777776543 357788
Q ss_pred EEecCCCCCCcceEEEECCCCcEEEEEeCCCCCC
Q 018939 247 CVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPD 280 (348)
Q Consensus 247 ~~~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~ 280 (348)
..|+.+ ...|+...+|. ..+..+ ++|+...
T Consensus 130 ~~pv~D--tik~~~~tldR-~~l~~~-QTPQ~f~ 159 (378)
T PRK09382 130 ALPVAD--TLKRANETVDR-EGLKLI-QTPQLSR 159 (378)
T ss_pred EEEecc--CcEEeeeEcCc-ccEEEE-ECCCCCC
Confidence 888876 44565545554 466555 8887653
No 76
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=99.38 E-value=3.5e-11 Score=117.11 Aligned_cols=217 Identities=19% Similarity=0.264 Sum_probs=135.4
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeC---CcchHHHHHHHHhHhcC-----------CCeEEEEcc-CCchhHHH
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIG---GNYRLIDIPMSNCINSG-----------FNKIFIMTQ-FNSFSLNR 155 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIg---Gk~pLId~~l~~l~~aG-----------i~~IvVvt~-~~~~~l~~ 155 (348)
.++.+||||||.|||| +...||+|+||+ |+ |++++.++.+...+ .-.++|+|+ +..+.+.+
T Consensus 14 ~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k-~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~ 89 (323)
T cd04193 14 GKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKK-SLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRK 89 (323)
T ss_pred CCEEEEEECCCccccc---CCCCCeEEEEecCCCCC-cHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHH
Confidence 3688999999999999 788999999998 68 99999999998842 124668888 66777888
Q ss_pred HHHHhccCCC---Ccc-cCCCcEEEEecccCC---CcCCcc-ccCCcHHHHHHHHH--HHHhhccCCCceEEEEcCCcc-
Q 018939 156 HLARSYNLGN---GVN-FGDGFVEVLAATQTP---GEAGKK-WFQGTADAVRQFIW--VFEDAKNKNVENVLILSGDHL- 224 (348)
Q Consensus 156 hl~r~y~~~~---g~~-~~~~~v~vl~~~q~~---~~~g~~-~~~Gta~Al~~~l~--~i~~~~~~~~e~vLIl~gD~l- 224 (348)
++.+.-.|+- .+. |.++.+-.+..+... ...... .+.|.++-...... .++++...+.+++.|.+.|.+
T Consensus 90 ~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L 169 (323)
T cd04193 90 FFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNIL 169 (323)
T ss_pred HHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccc
Confidence 8864211221 011 111111111110000 001111 24677776654433 466666678999999999994
Q ss_pred cccCHHHHHHHHHhcCCcEEEEEEecCCCCCCcce-EEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCc
Q 018939 225 YRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYG-LMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPY 303 (348)
Q Consensus 225 ~~~d~~~ll~~h~~~~aditi~~~~~~~~~~~~~g-~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (348)
....--.++..+.++++++++-+++..... ..-| ++..|..-.|+++.|-|+...... ..++. + .-+
T Consensus 170 ~~~~Dp~~lG~~~~~~~~~~~kvv~k~~~~-ekvG~l~~~~g~~~vvEysel~~~~~~~~-~~~g~-l---------~f~ 237 (323)
T cd04193 170 VKVADPVFIGFCISKGADVGAKVVRKRYPT-EKVGVVVLVDGKPQVVEYSEISDELAEKR-DADGE-L---------QYN 237 (323)
T ss_pred ccccCHHHhHHHHHcCCceEEEEEECCCCC-CceeEEEEECCeEEEEEeecCCHHHHhcc-CcCCc-E---------ecc
Confidence 444334578888999999999887765322 2234 344455557788888765432110 00100 0 123
Q ss_pred eeEeEEEEEeHHHHHHHHHh
Q 018939 304 IASMGVYLFRTDVLLNLLRS 323 (348)
Q Consensus 304 ~a~~GiYif~~~vl~~ll~~ 323 (348)
..|+.+.+|+-++|.++++.
T Consensus 238 ~~ni~~~~fsl~fl~~~~~~ 257 (323)
T cd04193 238 AGNIANHFFSLDFLEKAAEM 257 (323)
T ss_pred cchHhhheeCHHHHHHHHhh
Confidence 45667889999999988654
No 77
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.36 E-value=7.2e-12 Score=110.21 Aligned_cols=110 Identities=22% Similarity=0.313 Sum_probs=85.2
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
|.+||+|||+||||. ..-||+++++|+ |||+|+++.+.+ .+++|+++++.+......++...+
T Consensus 1 m~~iiMAGGrGtRmg----~~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~g----------- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVG----------- 63 (177)
T ss_pred CceEEecCCcccccC----CCcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcC-----------
Confidence 568999999999994 256999999999 999999999998 789999999999888887775321
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCccc-ccC-HHHHHHHHH
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLY-RMD-YTEFLQKHI 237 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~-~~d-~~~ll~~h~ 237 (348)
++|+...- .|-..-++.++..+ ..++|++++|+.+ +.. +..+++.+.
T Consensus 64 -v~vi~tpG----------~GYv~Dl~~al~~l-------~~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 -VKVIETPG----------EGYVEDLRFALESL-------GTPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred -ceEEEcCC----------CChHHHHHHHHHhc-------CCceEEEecccccCCHHHHHHHHHHHh
Confidence 56664221 35666677776655 3599999999954 433 666777666
No 78
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.36 E-value=8.7e-12 Score=111.83 Aligned_cols=119 Identities=21% Similarity=0.259 Sum_probs=85.7
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
|++|.+||||||.|+||. ..||+++|++|+ |||+|+++.+. .++++|+|+++...+. +. .+
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~----~~-~~-------- 61 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLAR----YA-AF-------- 61 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHH----HH-hc--------
Confidence 467899999999999994 369999999999 99999999998 6799999998764322 11 11
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-ccccC-HHHHHHHHHhcCCcE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHIDTKADI 243 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~d-~~~ll~~h~~~~adi 243 (348)
+ +.++..... +..|+.++++.++... ..+.++|+.||+ +++.+ +..+++.+.+.+..+
T Consensus 62 ~---~~~v~~~~~-------~~~g~~~~i~~~l~~~------~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 121 (193)
T PRK00317 62 G---LPVIPDSLA-------DFPGPLAGILAGLKQA------RTEWVLVVPCDTPFIPPDLVARLAQAAGKDDADV 121 (193)
T ss_pred C---CcEEeCCCC-------CCCCCHHHHHHHHHhc------CCCeEEEEcCCcCCCCHHHHHHHHHhhhcCCCcE
Confidence 1 233322111 1258889999888644 358999999999 44544 777777665444443
No 79
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.34 E-value=2e-11 Score=109.16 Aligned_cols=126 Identities=21% Similarity=0.276 Sum_probs=87.9
Q ss_pred eEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCc
Q 018939 94 AAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGF 173 (348)
Q Consensus 94 ~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~ 173 (348)
.+||||||.|+||. .+|.+++++|+ |||+|+++.+...++.+++|+++...+.+ ..+.+.. +. ...
T Consensus 2 ~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~-~~~~~~~-~~------~~~ 67 (190)
T TIGR03202 2 VAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHL-SWLDPYL-LA------DER 67 (190)
T ss_pred eEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchh-hhhhHhh-hc------CCC
Confidence 58999999999994 47999999999 99999999988889999999998765432 1121111 10 011
Q ss_pred EEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-ccccC-HHHHHHHHHhcCCcEE
Q 018939 174 VEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHIDTKADIT 244 (348)
Q Consensus 174 v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~d-~~~ll~~h~~~~adit 244 (348)
+.++... +|..|.+.+++.++..+.+ ...+.++|++||+ ++..+ +..+++.+.....++.
T Consensus 68 ~~~~~~~--------~~~~G~~~si~~gl~~~~~---~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~~ 129 (190)
T TIGR03202 68 IMLVCCR--------DACEGQAHSLKCGLRKAEA---MGADAVVILLADQPFLTADVINALLALAKRRPDDYV 129 (190)
T ss_pred eEEEECC--------ChhhhHHHHHHHHHHHhcc---CCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCCEE
Confidence 3333221 2345889999999887632 2468999999999 44544 6777776655444443
No 80
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.31 E-value=2.3e-11 Score=108.03 Aligned_cols=120 Identities=22% Similarity=0.285 Sum_probs=85.4
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
+.+||||||.|+||. ..||++++++|+ |||+|+++.+.. ++++|+|++...... .....+ +
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~~~--------~-- 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQAGF--------G-- 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---HhhccC--------C--
Confidence 468999999999994 359999999999 999999999986 589999998765321 111001 1
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-ccccC-HHHHHHHHHhcCCcEEE
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHIDTKADITV 245 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~d-~~~ll~~h~~~~aditi 245 (348)
+.++..... +..|++++++.++..+ ..+.++|+.||+ +...+ +..+++.+.+.++++++
T Consensus 62 -~~~i~~~~~-------~~~g~~~si~~al~~~------~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~ 122 (186)
T TIGR02665 62 -LPVVPDALA-------DFPGPLAGILAGLRWA------GTDWVLTVPCDTPFLPEDLVARLAAALEASDADIAV 122 (186)
T ss_pred -CcEEecCCC-------CCCCCHHHHHHHHHhc------CCCeEEEEecCCCcCCHHHHHHHHHHhhccCCcEEE
Confidence 233332211 2368999999998776 357999999999 55555 66777766554555544
No 81
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=99.31 E-value=3e-10 Score=107.77 Aligned_cols=214 Identities=17% Similarity=0.224 Sum_probs=132.8
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeC---CcchHHHHHHHHhHh--------cCCCeEEEEccCCchhHHHHHHHhc
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIG---GNYRLIDIPMSNCIN--------SGFNKIFIMTQFNSFSLNRHLARSY 161 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIg---Gk~pLId~~l~~l~~--------aGi~~IvVvt~~~~~~l~~hl~r~y 161 (348)
+.+||||||.|||| +...||+|+||+ |+ |+|++.++++.+ .+|.-+++...+.++.+.+++.+ +
T Consensus 1 va~viLaGG~GtRL---g~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~-~ 75 (266)
T cd04180 1 VAVVLLAGGLGTRL---GKDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEK-I 75 (266)
T ss_pred CEEEEECCCCcccc---CCCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHH-c
Confidence 36899999999999 678999999999 99 999999999987 24666666676777788888864 3
Q ss_pred cCCCC--cccCCCcEEEEeccc-C-CCcCC-ccc-cCCcHHHHHHHH--HHHHhhccCCCceEEEEcCCcc-ccc-CHHH
Q 018939 162 NLGNG--VNFGDGFVEVLAATQ-T-PGEAG-KKW-FQGTADAVRQFI--WVFEDAKNKNVENVLILSGDHL-YRM-DYTE 231 (348)
Q Consensus 162 ~~~~g--~~~~~~~v~vl~~~q-~-~~~~g-~~~-~~Gta~Al~~~l--~~i~~~~~~~~e~vLIl~gD~l-~~~-d~~~ 231 (348)
++..+ ..|.++.+..+.... . ..+.. ..| +.|.+|.+.... ..+++++..+.+++.|.+.|++ ... |. .
T Consensus 76 ~~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP-~ 154 (266)
T cd04180 76 NQKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADP-L 154 (266)
T ss_pred CCCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCH-H
Confidence 22111 111111111111110 0 00011 123 467777665433 3466666678999999999994 555 43 3
Q ss_pred HHHHHHhcCCcEEEEEEecCCCCCCcceEEEECCCC--cEEEEEeCCCCCCCC---Cccc-ccccccCCCCCCCCCCcee
Q 018939 232 FLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSG--QIIQFAEKPKGPDLK---GMQC-DTTLLGLSMPDAVKFPYIA 305 (348)
Q Consensus 232 ll~~h~~~~aditi~~~~~~~~~~~~~g~v~id~~g--~V~~~~EKp~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~a 305 (348)
++-.+...++++.+-+.+-... ...-|++...++| .++++.|-|+..... ...+ +++ .......
T Consensus 155 ~lG~~~~~~~~~~~kvv~K~~~-d~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 224 (266)
T cd04180 155 FIGIAIQNRKAINQKVVPKTRN-EESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPKDID---------DAPFFLF 224 (266)
T ss_pred HHHHHHHcCCCEEEEEEECCCC-CCeEEEEEEecCCCEEEEEeccCCHHHHhccccccCcCCCC---------ceeeccc
Confidence 6777888899988877765432 2334554442224 578887765432110 0000 011 1123567
Q ss_pred EeEEEEEeHHHHHHHHH
Q 018939 306 SMGVYLFRTDVLLNLLR 322 (348)
Q Consensus 306 ~~GiYif~~~vl~~ll~ 322 (348)
++...+|+-+.+.++++
T Consensus 225 n~~~~~~~l~~l~~~~~ 241 (266)
T cd04180 225 NTNNLINFLVEFKDRVD 241 (266)
T ss_pred eEEEEEEEHHHHHHHHH
Confidence 99999999999988775
No 82
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.28 E-value=7.9e-11 Score=110.92 Aligned_cols=145 Identities=16% Similarity=0.193 Sum_probs=95.7
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHh-cCCCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCIN-SGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~-aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
+++.+||||||.|+||+ ...||++++++|+ |||+|.++.+.+ .++++|+|+++.......+.+.+.+
T Consensus 23 ~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~-------- 90 (252)
T PLN02728 23 KSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENI-------- 90 (252)
T ss_pred CceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhc--------
Confidence 45789999999999993 4589999999999 999999999998 4899999999876544333322222
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-ccccC-HHHHHHHHHhcCCcEEEEE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHIDTKADITVSC 247 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~d-~~~ll~~h~~~~aditi~~ 247 (348)
+. .+.+.. .. .+..++++.++..++. ..+.|++..+|. +...+ +..+++...+.+ +.+..
T Consensus 91 ~~-~i~~v~-gg----------~~r~~SV~~gl~~l~~----~~~~VlihDaarP~vs~~~i~~li~~~~~~g--a~i~~ 152 (252)
T PLN02728 91 DV-PLKFAL-PG----------KERQDSVFNGLQEVDA----NSELVCIHDSARPLVTSADIEKVLKDAAVHG--AAVLG 152 (252)
T ss_pred CC-ceEEcC-CC----------CchHHHHHHHHHhccC----CCCEEEEecCcCCCCCHHHHHHHHHHHhhCC--eEEEe
Confidence 11 122221 11 2357889999877641 234455555555 45544 678888776655 34666
Q ss_pred EecCCCCCCcceEEEECCCCcEEE
Q 018939 248 VPMDDCRASDYGLMKIDRSGQIIQ 271 (348)
Q Consensus 248 ~~~~~~~~~~~g~v~id~~g~V~~ 271 (348)
.|..+. +..+++++.|.+
T Consensus 153 ~~~~dt------ik~v~~~~~v~~ 170 (252)
T PLN02728 153 VPVKAT------IKEANSDSFVVK 170 (252)
T ss_pred ecchhh------EEEecCCCceee
Confidence 776542 334465665544
No 83
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.24 E-value=1.2e-10 Score=105.74 Aligned_cols=114 Identities=25% Similarity=0.276 Sum_probs=82.4
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
.+++.+||||||.|+||. .+|++++++|+ |||+|+++.+... +++|+|+++.. + ....+ ...
T Consensus 5 ~~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~ivvv~~~~-~-~~~~~-----~~~---- 66 (200)
T PRK02726 5 KNNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAAC-ADEVYIITPWP-E-RYQSL-----LPP---- 66 (200)
T ss_pred CCCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHhh-CCEEEEECCCH-H-HHHhh-----ccC----
Confidence 456889999999999993 47999999999 9999999999764 78999888642 1 11111 111
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-ccccC-HHHHHHHHHh
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHID 238 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~d-~~~ll~~h~~ 238 (348)
.+.++.... +..|..++++.++..++ .+.++|+.||+ +...+ +..+++.+..
T Consensus 67 ---~~~~i~~~~--------~~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 67 ---GCHWLREPP--------PSQGPLVAFAQGLPQIK------TEWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred ---CCeEecCCC--------CCCChHHHHHHHHHhCC------CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 134443322 23689999999988763 48999999999 44544 6677776543
No 84
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.20 E-value=1.5e-10 Score=114.57 Aligned_cols=124 Identities=20% Similarity=0.287 Sum_probs=88.4
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
++++.+||||||.|+||. ..||+|++++|+ |||+|+++.+.. .+++|+|++....+.+.+++ . +
T Consensus 3 ~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~------~-~--- 66 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDLF------P-G--- 66 (366)
T ss_pred CCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhc------c-C---
Confidence 456889999999999994 479999999999 999999999986 48999987766543332211 1 1
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-ccccC-HHHHHHHHHhcCCcEEEE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHIDTKADITVS 246 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~d-~~~ll~~h~~~~aditi~ 246 (348)
+.++...... ..|..++++.++..+ ..+.++|++||+ ++..+ +..+++.+...++++.+.
T Consensus 67 ----~~~i~d~~~g-------~~G~~~si~~gl~~~------~~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~ 128 (366)
T PRK14489 67 ----LPVYPDILPG-------FQGPLSGILAGLEHA------DSEYLFVVACDTPFLPENLVKRLSKALAIEGADIAVP 128 (366)
T ss_pred ----CcEEecCCCC-------CCChHHHHHHHHHhc------CCCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEEE
Confidence 1223222110 247889999998765 357899999998 45555 677777766667766544
No 85
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=99.20 E-value=1.1e-09 Score=111.43 Aligned_cols=216 Identities=20% Similarity=0.212 Sum_probs=130.4
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeC---CcchHHHHHHHHhHhc------------C-CCeEEEEcc-CCchhH
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIG---GNYRLIDIPMSNCINS------------G-FNKIFIMTQ-FNSFSL 153 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIg---Gk~pLId~~l~~l~~a------------G-i~~IvVvt~-~~~~~l 153 (348)
.++.+||||||.|||| +...||+|+||+ |+ +|+++.++.+... + .-.++|+|. +..+.+
T Consensus 105 gkvavViLAGG~GTRL---g~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t 180 (482)
T PTZ00339 105 GEVAVLILAGGLGTRL---GSDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQT 180 (482)
T ss_pred CCeEEEEECCCCcCcC---CCCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHH
Confidence 3599999999999999 578999999995 78 9999999999874 1 124555554 666777
Q ss_pred HHHHHHhccCCC---Ccc-cCCCcEEEEecc-cCC---CcCCcc-ccCCcHHHHHHHHH--HHHhhccCCCceEEEEcCC
Q 018939 154 NRHLARSYNLGN---GVN-FGDGFVEVLAAT-QTP---GEAGKK-WFQGTADAVRQFIW--VFEDAKNKNVENVLILSGD 222 (348)
Q Consensus 154 ~~hl~r~y~~~~---g~~-~~~~~v~vl~~~-q~~---~~~g~~-~~~Gta~Al~~~l~--~i~~~~~~~~e~vLIl~gD 222 (348)
.+++.+.-.|+- .+. |.++.+-.+... -.. ...... .+.|.++-...... .+++.+..+.+++.|.+.|
T Consensus 181 ~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD 260 (482)
T PTZ00339 181 RQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISID 260 (482)
T ss_pred HHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecC
Confidence 777753211220 011 111111111100 000 001111 24577766554332 3666666789999999999
Q ss_pred cc-cccCHHHHHHHHHhcCC-cEEEEEEecCCCCCCcceEEE-ECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCC
Q 018939 223 HL-YRMDYTEFLQKHIDTKA-DITVSCVPMDDCRASDYGLMK-IDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAV 299 (348)
Q Consensus 223 ~l-~~~d~~~ll~~h~~~~a-diti~~~~~~~~~~~~~g~v~-id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~ 299 (348)
.+ ....--.++..+.+.++ ++.-.+.+... ...-|++. .|..-.|+++.|-+..... ...-+++.+
T Consensus 261 N~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~--~EkvG~~~~~~g~~~vvEYsEi~~~~~~-~~~~~~g~l-------- 329 (482)
T PTZ00339 261 NILAKVLDPEFIGLASSFPAHDVLNKCVKRED--DESVGVFCLKDYEWQVVEYTEINERILN-NDELLTGEL-------- 329 (482)
T ss_pred cccccccCHHHhHHHHHCCchhheeeeecCCC--CCceeEEEEeCCcccEEEEeccChhhhh-cccccCCee--------
Confidence 96 44433457888888888 77766665433 23346554 3444478999886653321 000011111
Q ss_pred CCCceeEeEEEEEeHHHHHHHHH
Q 018939 300 KFPYIASMGVYLFRTDVLLNLLR 322 (348)
Q Consensus 300 ~~~~~a~~GiYif~~~vl~~ll~ 322 (348)
.=...++..++|+-++|.+++.
T Consensus 330 -~f~~gnI~~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 330 -AFNYGNICSHIFSLDFLKKVAA 351 (482)
T ss_pred -cccccceEEEEEEHHHHHHHhh
Confidence 1145689999999999998754
No 86
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.18 E-value=5e-09 Score=96.85 Aligned_cols=170 Identities=17% Similarity=0.327 Sum_probs=115.6
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhc-CCCeEEEEccCCchhHHHHHHHhccCCCCcccCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINS-GFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGD 171 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~a-Gi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~ 171 (348)
+.+||+|||.|+|| ....||++++++|+ |+|.|.++.+.+. .+++|+|++.....+..+.+...
T Consensus 1 V~aIilAaG~G~R~---g~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~----------- 65 (221)
T PF01128_consen 1 VAAIILAAGSGSRM---GSGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK----------- 65 (221)
T ss_dssp EEEEEEESS-STCC---TSSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH-----------
T ss_pred CEEEEeCCccchhc---CcCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC-----------
Confidence 46999999999999 45789999999999 9999999999984 68999999988764433333222
Q ss_pred CcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-ccccC-HHHHHHHHHhcCCcEEEEEEe
Q 018939 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHIDTKADITVSCVP 249 (348)
Q Consensus 172 ~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~d-~~~ll~~h~~~~aditi~~~~ 249 (348)
..+.++... ..-.++++.++..+.+ ..+.|+|..|=- +...+ +.++++...+ +.++.+...|
T Consensus 66 ~~v~iv~GG-----------~tR~~SV~ngL~~l~~----~~d~VlIHDaaRPfv~~~~i~~~i~~~~~-~~~aai~~~p 129 (221)
T PF01128_consen 66 KKVKIVEGG-----------ATRQESVYNGLKALAE----DCDIVLIHDAARPFVSPELIDRVIEAARE-GHGAAIPALP 129 (221)
T ss_dssp TTEEEEE-------------SSHHHHHHHHHHCHHC----TSSEEEEEETTSTT--HHHHHHHHHHHHH-TCSEEEEEEE
T ss_pred CCEEEecCC-----------hhHHHHHHHHHHHHHc----CCCEEEEEccccCCCCHHHHHHHHHHHHh-hcCcEEEEEe
Confidence 125555422 1357899999988873 347899988876 44444 6777877654 3455677788
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhh
Q 018939 250 MDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSS 324 (348)
Q Consensus 250 ~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~ 324 (348)
+.+ .+...+++|.|.+.... +. .+..--=-.|+.+.|....+..
T Consensus 130 ~~D------Tik~v~~~~~v~~tldR---~~----------------------l~~~QTPQ~F~~~~l~~a~~~a 173 (221)
T PF01128_consen 130 VTD------TIKRVDDDGFVTETLDR---SK----------------------LWAVQTPQAFRFELLLEAYEKA 173 (221)
T ss_dssp -SS------EEEEESTTSBEEEEETG---GG----------------------EEEEEEEEEEEHHHHHHHHHTH
T ss_pred ccc------cEEEEecCCcccccCCH---HH----------------------eeeecCCCeecHHHHHHHHHHH
Confidence 765 35666768877765432 21 2233334578889998887654
No 87
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.17 E-value=2.3e-09 Score=99.06 Aligned_cols=181 Identities=20% Similarity=0.248 Sum_probs=120.1
Q ss_pred EEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcC-CCeEEEEccCCchhHHHHHHHhccCCCCcccCCCc
Q 018939 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGF 173 (348)
Q Consensus 95 aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aG-i~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~ 173 (348)
+||+|+|.++||. .|.+.|++|+ |||.|.++.+.+++ +++|+|.|.. +.+.+.. +.| |. .
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVstd~--~~i~~~a-~~~--------g~-~ 62 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVSTDD--EEIAEVA-KSY--------GA-S 62 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeCCC--HHHHHHH-HHc--------CC-E
Confidence 7999999999992 5999999999 99999999999987 6777776643 4454433 344 11 0
Q ss_pred EEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccc--cCHHHHHHHHHhcCCcEEEEEEecC
Q 018939 174 VEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYR--MDYTEFLQKHIDTKADITVSCVPMD 251 (348)
Q Consensus 174 v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~--~d~~~ll~~h~~~~aditi~~~~~~ 251 (348)
+.++.+... .++..|+.++++.++..+++. ...+.|+++.+|..+. .++..+++.+.+.++|..+.+.+..
T Consensus 63 v~~~r~~~l-----~~d~~~~~~si~~~l~~l~~~--~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~ 135 (222)
T TIGR03584 63 VPFLRPKEL-----ADDFTGTAPVVKHAIEELKLQ--KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFA 135 (222)
T ss_pred eEEeChHHH-----cCCCCCchHHHHHHHHHHhhc--CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccC
Confidence 112211110 012358899999999887521 2357899999999554 4689999999887789888887765
Q ss_pred CCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHH
Q 018939 252 DCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLN 319 (348)
Q Consensus 252 ~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ 319 (348)
. +. +-....+++|++..+..........+. ..-|..+.++|+++++.|.+
T Consensus 136 ~--~~-~~~~~~~~~g~~~~~~~~~~~~~rQd~---------------~~~y~~nga~y~~~~~~~~~ 185 (222)
T TIGR03584 136 F--PI-QRAFKLKENGGVEMFFPEHFNTRSQDL---------------EEAYHDAGQFYWGKSQAWLE 185 (222)
T ss_pred C--Ch-HHheEECCCCcEEecCCCcccCCCCCC---------------chheeeCCeEEEEEHHHHHh
Confidence 3 12 222355667877665422111000000 01366799999999998864
No 88
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.14 E-value=2.9e-10 Score=102.93 Aligned_cols=113 Identities=24% Similarity=0.334 Sum_probs=81.8
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
+++|.+||||||+|+|| .+|++++++|+ |||+|+++.+....- .++|+...+... | . .+
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~--------~-~----~~ 60 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR--------Y-A----EF 60 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh--------h-h----cc
Confidence 45789999999999999 67999999999 999999999988754 566666554321 1 0 11
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-cccC-HHHHHHHHHhcC
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-YRMD-YTEFLQKHIDTK 240 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~~~d-~~~ll~~h~~~~ 240 (348)
+ ++|+.+... ++ |...+++.++..+ ..+.+++++||+- ...+ +..+.+...+.+
T Consensus 61 g---~~vv~D~~~-------~~-GPL~Gi~~al~~~------~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 61 G---LPVVPDELP-------GF-GPLAGILAALRHF------GTEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred C---CceeecCCC-------CC-CCHHHHHHHHHhC------CCCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 1 455554332 22 8999999998777 4789999999994 4445 455665555444
No 89
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.12 E-value=7.6e-10 Score=99.79 Aligned_cols=122 Identities=17% Similarity=0.313 Sum_probs=93.8
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
+.++.+||||||.|+||. .+|-|.|+.|+ ||+.+.++....+++++++|++++.-......+.
T Consensus 3 ~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~----------- 65 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAVEALL----------- 65 (199)
T ss_pred CcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhh-----------
Confidence 456889999999999994 88999999999 9999999999999999999999997322222111
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc--cccCHHHHHHHHHhcC
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL--YRMDYTEFLQKHIDTK 240 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l--~~~d~~~ll~~h~~~~ 240 (348)
....+.++... +|-+|.+.+++.++..... ..+.++++.||+- ...++..+++.+...+
T Consensus 66 ~~~~~~~v~np--------d~~~Gls~Sl~ag~~a~~~----~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~~ 126 (199)
T COG2068 66 AQLGVTVVVNP--------DYAQGLSTSLKAGLRAADA----EGDGVVLMLGDMPQVTPATVRRLIAAFRARG 126 (199)
T ss_pred ccCCeEEEeCc--------chhhhHhHHHHHHHHhccc----CCCeEEEEeCCCCCCCHHHHHHHHHhccccC
Confidence 11124555443 3458999999999988752 1259999999994 4456888998887763
No 90
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.10 E-value=7.6e-10 Score=100.15 Aligned_cols=107 Identities=16% Similarity=0.347 Sum_probs=76.0
Q ss_pred CCCCCCeeEEEEeCCCCccCCCCCCCCCccceeeCC-cchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCC
Q 018939 87 QADPKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGG-NYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGN 165 (348)
Q Consensus 87 ~~~~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgG-k~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~ 165 (348)
+..++++.+||||||.|+|| ..+|+++|++| + |||+|+++.+... +++|+|++++.. |.+
T Consensus 3 ~~~~~~i~~vILAgG~s~Rm-----G~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~~~----------~~~-- 63 (196)
T PRK00560 3 NPMIDNIPCVILAGGKSSRM-----GENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKDKK----------FEF-- 63 (196)
T ss_pred CccccCceEEEECCcccccC-----CCCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECchh----------ccc--
Confidence 34467799999999999999 46899999999 9 9999999999876 889999887511 101
Q ss_pred CcccCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-cccC-HHHH
Q 018939 166 GVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-YRMD-YTEF 232 (348)
Q Consensus 166 g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~~~d-~~~l 232 (348)
. +.++.+... ...|...++..++... ..+.++|+.||+. ...+ +..+
T Consensus 64 ----~---~~~v~d~~~-------~~~gpl~gi~~~l~~~------~~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 64 ----N---APFLLEKES-------DLFSPLFGIINAFLTL------QTPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred ----C---CcEEecCCC-------CCCCcHHHHHHHHHhc------CCCeEEEEecCcCcCCHHHHHHH
Confidence 1 233332111 1246777777665433 3689999999994 4555 4555
No 91
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=98.99 E-value=1.6e-08 Score=93.73 Aligned_cols=151 Identities=19% Similarity=0.309 Sum_probs=103.4
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcC-CCeEEEEccCCchhHHHHHHHhccCCCCcc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNSFSLNRHLARSYNLGNGVN 168 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aG-i~~IvVvt~~~~~~l~~hl~r~y~~~~g~~ 168 (348)
++++.+||||||.|+|| ....||.+++++|+ |||+|.++.+..+. |++|+|+++.........+.+ .
T Consensus 2 ~~~~~~vilAaG~G~R~---~~~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~-~------- 69 (230)
T COG1211 2 RMMVSAVILAAGFGSRM---GNPVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK-L------- 69 (230)
T ss_pred CceEEEEEEcCcccccc---CCCCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh-h-------
Confidence 35688999999999999 45899999999999 99999999999964 799999998854332222211 1
Q ss_pred cCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-cccc-CHHHHHHHHHhcCCcEEEE
Q 018939 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRM-DYTEFLQKHIDTKADITVS 246 (348)
Q Consensus 169 ~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~-d~~~ll~~h~~~~aditi~ 246 (348)
.....++++... ..-.++++.++..+.. ...+.|||..+=- +... .+.++++... +.++.+.
T Consensus 70 ~~~~~v~~v~GG-----------~~R~~SV~~gL~~~~~---~~~~~VlvHDaaRPf~~~~~i~~li~~~~--~~~aai~ 133 (230)
T COG1211 70 SADKRVEVVKGG-----------ATRQESVYNGLQALSK---YDSDWVLVHDAARPFLTPKLIKRLIELAD--KYGAAIL 133 (230)
T ss_pred ccCCeEEEecCC-----------ccHHHHHHHHHHHhhc---cCCCEEEEeccccCCCCHHHHHHHHHhhc--cCCcEEE
Confidence 111225554322 2367899999988863 2468888888876 3333 4777774333 3445677
Q ss_pred EEecCCCCCCcceEEEECCCCcEEEEEe
Q 018939 247 CVPMDDCRASDYGLMKIDRSGQIIQFAE 274 (348)
Q Consensus 247 ~~~~~~~~~~~~g~v~id~~g~V~~~~E 274 (348)
..|+.+. ++..+++|.|.+...
T Consensus 134 alpv~DT------ik~~~~~~~i~~t~~ 155 (230)
T COG1211 134 ALPVTDT------LKRVDADGNIVETVD 155 (230)
T ss_pred EeeccCc------EEEecCCCCeeeccC
Confidence 7887652 344455677776543
No 92
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=98.98 E-value=4.9e-09 Score=103.89 Aligned_cols=113 Identities=12% Similarity=0.161 Sum_probs=78.6
Q ss_pred CCCCCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCC
Q 018939 87 QADPKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNG 166 (348)
Q Consensus 87 ~~~~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g 166 (348)
+.+..++.+||||||.|+||+ .+|++++++|+ |||+|+++.+... +++++|+++..... .+. .+
T Consensus 169 ~~~~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~~-~~~vvV~~~~~~~~---~~~-~~----- 232 (369)
T PRK14490 169 RAEEVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRPH-CQEVFISCRAEQAE---QYR-SF----- 232 (369)
T ss_pred ccccCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHhh-CCEEEEEeCCchhh---HHh-hc-----
Confidence 344466889999999999993 58999999999 9999999999864 78888877654221 111 11
Q ss_pred cccCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-cccC-HHHHHHH
Q 018939 167 VNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-YRMD-YTEFLQK 235 (348)
Q Consensus 167 ~~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~~~d-~~~ll~~ 235 (348)
+ +.++.+... ..|...++..++... ..+.++|+.||+. .+.+ +..+++.
T Consensus 233 ---~---v~~i~d~~~--------~~Gpl~gi~~al~~~------~~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 233 ---G---IPLITDSYL--------DIGPLGGLLSAQRHH------PDAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred ---C---CcEEeCCCC--------CCCcHHHHHHHHHhC------CCCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 1 344433221 157778888876543 3578999999994 4555 5566654
No 93
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=98.97 E-value=8.6e-09 Score=95.09 Aligned_cols=116 Identities=24% Similarity=0.311 Sum_probs=80.6
Q ss_pred EEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcC-CCeEEEEccCCc--hhHHHHHHHhccCCCCcccCC
Q 018939 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNS--FSLNRHLARSYNLGNGVNFGD 171 (348)
Q Consensus 95 aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aG-i~~IvVvt~~~~--~~l~~hl~r~y~~~~g~~~~~ 171 (348)
+||||||.|+||. +|.+++++|+ |||+|+++.+..++ +++++|+++... +.+.+++. .+ +
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~-~~----~----- 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAK-KL----G----- 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHH-Hc----C-----
Confidence 7999999999992 4999999999 99999999999987 899999998775 34444432 11 1
Q ss_pred CcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-ccc-CHHHHHHHHHhcCCcEEE
Q 018939 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-YRM-DYTEFLQKHIDTKADITV 245 (348)
Q Consensus 172 ~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~~~-d~~~ll~~h~~~~aditi 245 (348)
+.++.... .+ .+..+...++. ...+.++++.||+. .+. .+..+++.+...+.++++
T Consensus 65 --v~~v~~~~----------~~---~l~~~~~~~~~---~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~ 122 (233)
T cd02518 65 --VKVFRGSE----------ED---VLGRYYQAAEE---YNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTS 122 (233)
T ss_pred --CeEEECCc----------hh---HHHHHHHHHHH---cCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence 33332211 11 12222222221 24578999999994 444 488999988877777765
No 94
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.92 E-value=1.8e-07 Score=90.17 Aligned_cols=215 Identities=14% Similarity=0.213 Sum_probs=131.6
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhc----CC-CeEEEEccCCc-hhHHHHHHHhccCC
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINS----GF-NKIFIMTQFNS-FSLNRHLARSYNLG 164 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~a----Gi-~~IvVvt~~~~-~~l~~hl~r~y~~~ 164 (348)
.++.+|+||||.|||| ....||.|+||....+++++.++++... |. =..+|.|++.. ++..+++. +++..
T Consensus 2 ~kvavl~LaGG~GTRL---G~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~-~~~~~ 77 (300)
T cd00897 2 NKLVVLKLNGGLGTSM---GCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILK-KYAGV 77 (300)
T ss_pred CcEEEEEecCCccccc---CCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHH-HcCCC
Confidence 4688999999999999 6789999999955438999999988762 33 25678888775 44667775 44221
Q ss_pred -CCc-ccCCCcEEEEec-c-----cCCCcCCccc-cCCcHHHHHHHH--HHHHhhccCCCceEEEEcCCcccccCHHHHH
Q 018939 165 -NGV-NFGDGFVEVLAA-T-----QTPGEAGKKW-FQGTADAVRQFI--WVFEDAKNKNVENVLILSGDHLYRMDYTEFL 233 (348)
Q Consensus 165 -~g~-~~~~~~v~vl~~-~-----q~~~~~g~~~-~~Gta~Al~~~l--~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll 233 (348)
..+ .|.++.+.-+.. . +........| +.|.++-..... ..++++...+.+++.|.+.|.+...-=..++
T Consensus 78 ~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~~l 157 (300)
T cd00897 78 NVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLRIL 157 (300)
T ss_pred ccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHHHH
Confidence 000 111111100000 0 0000111122 456665544332 2355555678999999999997654323588
Q ss_pred HHHHhcCCcEEEEEEecCCCCCCcceE-EEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEE
Q 018939 234 QKHIDTKADITVSCVPMDDCRASDYGL-MKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLF 312 (348)
Q Consensus 234 ~~h~~~~aditi~~~~~~~~~~~~~g~-v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif 312 (348)
..|.++++++++=+++-..+. ..-|. +..|..-+|+++.|-|+.... +.. +.. .-.+.+++.++|
T Consensus 158 g~~~~~~~~~~~evv~Kt~~d-ek~G~l~~~~g~~~vvEyse~p~e~~~-~~~-~~~-----------~~~~~nt~n~~~ 223 (300)
T cd00897 158 NHMVDNKAEYIMEVTDKTRAD-VKGGTLIQYEGKLRLLEIAQVPKEHVD-EFK-SIK-----------KFKIFNTNNLWV 223 (300)
T ss_pred HHHHhcCCceEEEEeecCCCC-CcccEEEEECCEEEEEEeccCCHHHHH-hhc-Ccc-----------cceEEEEeEEEE
Confidence 899999999998777654321 23443 334444478888887764311 000 100 113679999999
Q ss_pred eHHHHHHHHHh
Q 018939 313 RTDVLLNLLRS 323 (348)
Q Consensus 313 ~~~vl~~ll~~ 323 (348)
+-+.|.++++.
T Consensus 224 ~l~~L~~~~~~ 234 (300)
T cd00897 224 NLKAVKRVVEE 234 (300)
T ss_pred EHHHHHHHHHh
Confidence 99999988654
No 95
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=98.82 E-value=2.8e-08 Score=97.66 Aligned_cols=109 Identities=13% Similarity=0.160 Sum_probs=77.8
Q ss_pred CeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCC
Q 018939 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGD 171 (348)
Q Consensus 92 ~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~ 171 (348)
.+.+||||||+|+||. .+|.|+|+.|+ ||++|+++.+... +++|+|+++... . ..+.. .
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~~-~~~ViVv~~~~~------~-~~~~~-~------ 218 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAKY-CEQVFLSARPSQ------W-QGTPL-E------ 218 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHhh-CCEEEEEeCchH------h-hhccc-c------
Confidence 5789999999999993 59999999999 9999999888764 788988886431 0 11100 0
Q ss_pred CcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-cccC-HHHHHHHH
Q 018939 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-YRMD-YTEFLQKH 236 (348)
Q Consensus 172 ~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~~~d-~~~ll~~h 236 (348)
.+.++.+.. +..|...+++.++...+ .++++|+.||+. ...+ +..+++.+
T Consensus 219 -~v~~I~D~~--------~~~GPlagI~aaL~~~~------~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 219 -NLPTLPDRG--------ESVGPISGILTALQSYP------GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred -CCeEEeCCC--------CCCChHHHHHHHHHhCC------CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 133433222 13699999999987652 357899999994 5555 66677655
No 96
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.76 E-value=8.3e-07 Score=90.09 Aligned_cols=215 Identities=18% Similarity=0.279 Sum_probs=132.6
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeC-CcchHHHHHHHHhHh----cCCC-eEEEEccCCch-hHHHHHHHhcc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIG-GNYRLIDIPMSNCIN----SGFN-KIFIMTQFNSF-SLNRHLARSYN 162 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIg-Gk~pLId~~l~~l~~----aGi~-~IvVvt~~~~~-~l~~hl~r~y~ 162 (348)
-.++.+|.||||.|||| ....||.++|+. |+ +++|..++++.. .|.. ..+|.++++.+ +..++|. +|+
T Consensus 77 L~k~avlkLnGGlGTrm---G~~~PKs~i~v~~~~-sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~-k~~ 151 (469)
T PLN02474 77 LDKLVVLKLNGGLGTTM---GCTGPKSVIEVRNGL-TFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVE-KYT 151 (469)
T ss_pred HhcEEEEEecCCccccc---CCCCCceeEEcCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHH-HcC
Confidence 36799999999999999 678999999994 56 899999988866 3432 45888887754 4666664 453
Q ss_pred C-CCCcc-cCCCcEE-EEecccCCCc-----CCccc-cCCcHHHHHHHHH--HHHhhccCCCceEEEEcCCcccccCHHH
Q 018939 163 L-GNGVN-FGDGFVE-VLAATQTPGE-----AGKKW-FQGTADAVRQFIW--VFEDAKNKNVENVLILSGDHLYRMDYTE 231 (348)
Q Consensus 163 ~-~~g~~-~~~~~v~-vl~~~q~~~~-----~g~~~-~~Gta~Al~~~l~--~i~~~~~~~~e~vLIl~gD~l~~~d~~~ 231 (348)
. ...+. |.++.+. +..+...+-+ ....| +.|.++-...... .++++...+.+++.|.+.|.+...-=..
T Consensus 152 ~~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~ 231 (469)
T PLN02474 152 NSNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLK 231 (469)
T ss_pred CCccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHH
Confidence 2 11111 1111111 1111000000 11124 4666665543322 3555556789999999999976542235
Q ss_pred HHHHHHhcCCcEEEEEEecCCCCCCcceE-EEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEE
Q 018939 232 FLQKHIDTKADITVSCVPMDDCRASDYGL-MKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVY 310 (348)
Q Consensus 232 ll~~h~~~~aditi~~~~~~~~~~~~~g~-v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiY 310 (348)
++..|.++++++++=+.+-.... ..-|. +..|..-+|+++.|-|+..... -+ +.+ + =.+.++..+
T Consensus 232 ~lg~~~~~~~e~~~ev~~Kt~~d-~kgG~l~~~dgk~~lvEysqvp~e~~~~-f~---~~~--------k-f~~fNtnn~ 297 (469)
T PLN02474 232 ILNHLIQNKNEYCMEVTPKTLAD-VKGGTLISYEGKVQLLEIAQVPDEHVNE-FK---SIE--------K-FKIFNTNNL 297 (469)
T ss_pred HHHHHHhcCCceEEEEeecCCCC-CCccEEEEECCEEEEEEEecCCHHHHHh-hc---ccc--------c-ceeeeeeeE
Confidence 88889999999998777644321 12343 3344444788998877543110 00 111 1 246799999
Q ss_pred EEeHHHHHHHHHh
Q 018939 311 LFRTDVLLNLLRS 323 (348)
Q Consensus 311 if~~~vl~~ll~~ 323 (348)
+|+-+.|.++++.
T Consensus 298 w~~L~~l~~~~~~ 310 (469)
T PLN02474 298 WVNLKAIKRLVEA 310 (469)
T ss_pred EEEHHHHHHHhhc
Confidence 9999999988653
No 97
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.75 E-value=6.2e-07 Score=82.18 Aligned_cols=188 Identities=20% Similarity=0.321 Sum_probs=129.4
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
++..+||+|-=.+||| --|||-.|+|+ |||.|+.++..++|.++++|.|.. +++.+++. .+ |
T Consensus 2 ~~~~viIPAR~~STRL------pgKPLadI~Gk-pmI~rV~e~a~~s~~~rvvVATDd--e~I~~av~-~~--------G 63 (247)
T COG1212 2 MKFVVIIPARLASTRL------PGKPLADIGGK-PMIVRVAERALKSGADRVVVATDD--ERIAEAVQ-AF--------G 63 (247)
T ss_pred CceEEEEecchhcccC------CCCchhhhCCc-hHHHHHHHHHHHcCCCeEEEEcCC--HHHHHHHH-Hh--------C
Confidence 4577899998889999 45999999999 999999999999999999999964 56777764 22 2
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-ccc-CHHHHHHHHHhcCCcEEEEEE
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-YRM-DYTEFLQKHIDTKADITVSCV 248 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~~~-d~~~ll~~h~~~~aditi~~~ 248 (348)
.+++.....- ..|| +-+..+...+. ...++.++=+-||.- ... .+..+++...+.++++.-++.
T Consensus 64 ---~~avmT~~~h-------~SGT-dR~~Ev~~~l~---~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~ 129 (247)
T COG1212 64 ---GEAVMTSKDH-------QSGT-DRLAEVVEKLG---LPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAV 129 (247)
T ss_pred ---CEEEecCCCC-------CCcc-HHHHHHHHhcC---CCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeee
Confidence 2332211111 1355 33444444432 224566666779994 343 477888888877888877777
Q ss_pred ecCCCC---CCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhh
Q 018939 249 PMDDCR---ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSS 324 (348)
Q Consensus 249 ~~~~~~---~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~ 324 (348)
+..++. .++--.+..|.+|+.+-|+.-|-....+. .| ..+++--.|+|.|++++|..+..+.
T Consensus 130 ~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-------~~-------~~p~l~HIGIYayr~~~L~~f~~~~ 194 (247)
T COG1212 130 KITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-------FG-------GTPFLRHIGIYAYRAGFLERFVALK 194 (247)
T ss_pred ecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-------cC-------CcchhheeehHHhHHHHHHHHHhcC
Confidence 766532 34454566788999999998775432110 00 0356778999999999999987764
No 98
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.74 E-value=6.8e-07 Score=89.75 Aligned_cols=214 Identities=19% Similarity=0.283 Sum_probs=134.1
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeC-CcchHHHHHHHHhHhc----CCC-eEEEEccCCchh-HHHHHHHhcc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIG-GNYRLIDIPMSNCINS----GFN-KIFIMTQFNSFS-LNRHLARSYN 162 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIg-Gk~pLId~~l~~l~~a----Gi~-~IvVvt~~~~~~-l~~hl~r~y~ 162 (348)
-.++.+|+||||+|||| ....||.+++|. |+ ++++.+++.+..+ +++ ..+|.++.+.++ ...+....|
T Consensus 103 ~~klAvl~LaGGqGtrl---G~~gPKgl~~V~~gk-s~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y- 177 (472)
T COG4284 103 LGKLAVLKLAGGQGTRL---GCDGPKGLFEVKDGK-SLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDY- 177 (472)
T ss_pred cCceEEEEecCCccccc---ccCCCceeEEecCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhh-
Confidence 46799999999999999 678999999999 77 9999999988774 432 467888888744 333444555
Q ss_pred CCC-C--cc-cCCCcEE-EEecccCCC--cCC--ccc-cCCcHHHHHHHHH--HHHhhccCCCceEEEEcCCcccc-cCH
Q 018939 163 LGN-G--VN-FGDGFVE-VLAATQTPG--EAG--KKW-FQGTADAVRQFIW--VFEDAKNKNVENVLILSGDHLYR-MDY 229 (348)
Q Consensus 163 ~~~-g--~~-~~~~~v~-vl~~~q~~~--~~g--~~~-~~Gta~Al~~~l~--~i~~~~~~~~e~vLIl~gD~l~~-~d~ 229 (348)
++- . +. |.++.+. ++.....+- ..+ ..| +.|+++-...... .++++...+.+++.|.+.|.+.- .|+
T Consensus 178 ~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~ 257 (472)
T COG4284 178 FGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL 257 (472)
T ss_pred cCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH
Confidence 321 1 11 1122111 221111110 011 133 4677665443333 56666667899999999999643 454
Q ss_pred HHHHHHHHhcCCcEEEEEEecCCCCCCcceEEE-ECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeE-e
Q 018939 230 TEFLQKHIDTKADITVSCVPMDDCRASDYGLMK-IDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIAS-M 307 (348)
Q Consensus 230 ~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~-id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~ 307 (348)
.++.+|..++.++++=++.-... ...-|++. .|..-+|+++.|-|......-. -++ ...-..++ .
T Consensus 258 -~~lg~~~~~~~e~~~e~t~Kt~a-~ekvG~Lv~~~g~~rllEysev~~~~~~~~~-s~~----------~~~~~n~Nni 324 (472)
T COG4284 258 -KFLGFMAETNYEYLMETTDKTKA-DEKVGILVTYDGKLRLLEYSEVPNEHREEFT-SDG----------KLKYFNTNNI 324 (472)
T ss_pred -HHHHHHHhcCcceeEEEeecccc-cccceEEEEeCCceEEEEEecCChhHhhhhc-ccc----------ceeeeccccc
Confidence 47888889999988866653322 24467655 7777899999998874211000 000 00012234 8
Q ss_pred EEEEEeHHHHHHHH
Q 018939 308 GVYLFRTDVLLNLL 321 (348)
Q Consensus 308 GiYif~~~vl~~ll 321 (348)
++|+++.+.+.+..
T Consensus 325 ~l~~~~~~~l~~~~ 338 (472)
T COG4284 325 WLHLFSVKFLKEAA 338 (472)
T ss_pred eeehhHHHHHHhhh
Confidence 89999999887754
No 99
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=98.71 E-value=4.6e-07 Score=91.22 Aligned_cols=215 Identities=24% Similarity=0.366 Sum_probs=127.6
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHh----cCC-CeEEEEccCCc-hhHHHHHHHhccC
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCIN----SGF-NKIFIMTQFNS-FSLNRHLARSYNL 163 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~----aGi-~~IvVvt~~~~-~~l~~hl~r~y~~ 163 (348)
-.++.+|+||||.|||| ....||.++||.....+++..++++.. .|+ -.++|.|+++. ++..+++.+ | +
T Consensus 54 ~~kvavl~LaGGlGTrl---G~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~k-y-f 128 (420)
T PF01704_consen 54 LGKVAVLKLAGGLGTRL---GCSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEK-Y-F 128 (420)
T ss_dssp TTCEEEEEEEESBSGCC---TESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHH-G-C
T ss_pred hCCEEEEEEcCcccCcc---CCCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHH-h-c
Confidence 35799999999999999 578999999996554899999888775 343 24677777664 567777766 5 3
Q ss_pred CCCcc---cCCCcEEEEecccC-CCcC-C------ccc-cCCcHHHHHHHH--HHHHhhccCCCceEEEEcCCcccccCH
Q 018939 164 GNGVN---FGDGFVEVLAATQT-PGEA-G------KKW-FQGTADAVRQFI--WVFEDAKNKNVENVLILSGDHLYRMDY 229 (348)
Q Consensus 164 ~~g~~---~~~~~v~vl~~~q~-~~~~-g------~~~-~~Gta~Al~~~l--~~i~~~~~~~~e~vLIl~gD~l~~~d~ 229 (348)
+-... |.++.+..+..+.. +.+. . ..| +.|.++-..... ..++++...+.+++.|.+.|.+...-=
T Consensus 129 g~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~D 208 (420)
T PF01704_consen 129 GLDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVD 208 (420)
T ss_dssp GSSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-
T ss_pred CCCcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccC
Confidence 32111 11121211211110 0000 1 123 457776444332 356666667899999999999776533
Q ss_pred HHHHHHHHhcCCcEEEEEEecCCCCCCcceE-EEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeE
Q 018939 230 TEFLQKHIDTKADITVSCVPMDDCRASDYGL-MKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMG 308 (348)
Q Consensus 230 ~~ll~~h~~~~aditi~~~~~~~~~~~~~g~-v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G 308 (348)
..++..+.+.++++.+-+++-.... ..-|+ +..|..-+|+++.|-|+... .+.+. .......++|
T Consensus 209 p~~lG~~~~~~~~~~~evv~Kt~~d-ek~Gvl~~~~G~~~vvEysqip~~~~-~~~~~------------~~~~~~Fntn 274 (420)
T PF01704_consen 209 PVFLGYMIEKNADFGMEVVPKTSPD-EKGGVLCRYDGKLQVVEYSQIPKEHM-AEFKD------------IKGFLLFNTN 274 (420)
T ss_dssp HHHHHHHHHTT-SEEEEEEE-CSTT-TSSEEEEEETTEEEEEEGGGS-HHGH-HHHTS------------TTTSBEEEEE
T ss_pred HHHHHHHHhccchhheeeeecCCCC-CceeEEEEeCCccEEEEeccCCHHHH-Hhhhc------------cccceEEEec
Confidence 4588889999999999888764322 22344 33443336677766554310 00000 0112456888
Q ss_pred EEEEeHHHHHHHHHh
Q 018939 309 VYLFRTDVLLNLLRS 323 (348)
Q Consensus 309 iYif~~~vl~~ll~~ 323 (348)
--+|+-+.|..+++.
T Consensus 275 Ni~~~l~~l~~~~~~ 289 (420)
T PF01704_consen 275 NIWFSLDFLKRLLER 289 (420)
T ss_dssp EEEEEHHHHHHHHHT
T ss_pred eeeEEHHHHHHHHHh
Confidence 889999999998764
No 100
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=98.71 E-value=5.7e-07 Score=87.14 Aligned_cols=216 Identities=14% Similarity=0.160 Sum_probs=130.7
Q ss_pred eEEEEeCCCCccCCCCCCCCCccceee---CCcchHHHHHHHHhHhcC--------C-CeEEEEccCCc-hhHHHHHHH-
Q 018939 94 AAIILGGGAGTRLFPLTNRRAKPAVPI---GGNYRLIDIPMSNCINSG--------F-NKIFIMTQFNS-FSLNRHLAR- 159 (348)
Q Consensus 94 ~aIILAgG~GtRl~pLT~~~PKpllpI---gGk~pLId~~l~~l~~aG--------i-~~IvVvt~~~~-~~l~~hl~r- 159 (348)
.+|+||||.|||| ....||.++|| .|+ +++++.++++.... . -.++|.|+... ++..+++.+
T Consensus 2 a~vllaGG~GTRL---G~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERL---GYSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCcccc---CCCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 5799999999999 67899999999 477 89999999887632 1 24688888765 446666643
Q ss_pred hccCCC---Ccc-cCCCcEEEEecccCCC------cCCc-cccCCcHHHHHHHH--HHHHhhccCCCceEEEEcCCc-cc
Q 018939 160 SYNLGN---GVN-FGDGFVEVLAATQTPG------EAGK-KWFQGTADAVRQFI--WVFEDAKNKNVENVLILSGDH-LY 225 (348)
Q Consensus 160 ~y~~~~---g~~-~~~~~v~vl~~~q~~~------~~g~-~~~~Gta~Al~~~l--~~i~~~~~~~~e~vLIl~gD~-l~ 225 (348)
.| |+- .+. |.++.+-.+....... +... ..+.|.++-..... ..++++...+.+++.|..-|. |.
T Consensus 78 ~y-FGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~ 156 (315)
T cd06424 78 NY-FGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALA 156 (315)
T ss_pred Cc-cCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhh
Confidence 22 321 111 1122222221000000 0001 12567766554332 235666667899999999999 45
Q ss_pred ccCHHHHHHHHHhcCCcEEEEEEecCCCCCCcceEEEE-C-CCC--cE--EEEEeCCCCCCC---CCcccccccccCCCC
Q 018939 226 RMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKI-D-RSG--QI--IQFAEKPKGPDL---KGMQCDTTLLGLSMP 296 (348)
Q Consensus 226 ~~d~~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~i-d-~~g--~V--~~~~EKp~~~~~---~~~~~~~~~~~~~~~ 296 (348)
....-.++-.+...++++...+++... ...-|++.. + .+| .| +++.|-+..... .+..++. ..|
T Consensus 157 ~~adP~fiG~~~~~~~d~~~k~v~~~~--~E~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~-~~~---- 229 (315)
T cd06424 157 FKAIPAVLGVSATKSLDMNSLTVPRKP--KEAIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDD-KTG---- 229 (315)
T ss_pred hccChhhEEEEecCCCceEeEEEeCCC--CCceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCccc-ccc----
Confidence 555556788888899999888777543 345675542 2 333 44 788776532110 0000000 111
Q ss_pred CCCCCCceeEeEEEEEeHHHHHHHHHhh
Q 018939 297 DAVKFPYIASMGVYLFRTDVLLNLLRSS 324 (348)
Q Consensus 297 ~~~~~~~~a~~GiYif~~~vl~~ll~~~ 324 (348)
..++.+|++.++|+-+.+.+.++..
T Consensus 230 ---~s~f~gNi~~~~f~l~~~~~~l~~~ 254 (315)
T cd06424 230 ---FSPFPGNINQLVFSLGPYMDELEKT 254 (315)
T ss_pred ---cccCCCeeeeEEEeHHHHHHHHhhc
Confidence 1246789999999999999888753
No 101
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=98.64 E-value=9.5e-07 Score=90.17 Aligned_cols=212 Identities=19% Similarity=0.269 Sum_probs=129.5
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeC---CcchHHHHHHHHhHhc--------------CC-CeEEEEccCCc-h
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIG---GNYRLIDIPMSNCINS--------------GF-NKIFIMTQFNS-F 151 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIg---Gk~pLId~~l~~l~~a--------------Gi-~~IvVvt~~~~-~ 151 (348)
.++.+|+||||.|||| ....||.|++|+ |+ .+++..++++... ++ =.++|.|++.. +
T Consensus 115 gkvavvlLAGGqGTRL---G~~~PKg~~~Iglps~k-slfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~ 190 (493)
T PLN02435 115 GKLAVVLLSGGQGTRL---GSSDPKGCFNIGLPSGK-SLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDE 190 (493)
T ss_pred CCEEEEEeCCCccccc---CCCCCccceecCCCCCC-cHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhH
Confidence 5688999999999999 678999999885 67 8999999876541 11 14588888665 4
Q ss_pred hHHHHHHH-hccCCCCcccCCCcEEEEecccCC-----C------cCC-ccccCCcHHHHHHHHH--HHHhhccCCCceE
Q 018939 152 SLNRHLAR-SYNLGNGVNFGDGFVEVLAATQTP-----G------EAG-KKWFQGTADAVRQFIW--VFEDAKNKNVENV 216 (348)
Q Consensus 152 ~l~~hl~r-~y~~~~g~~~~~~~v~vl~~~q~~-----~------~~g-~~~~~Gta~Al~~~l~--~i~~~~~~~~e~v 216 (348)
...++|.+ .| |+- ....|.+......+ + +.. ...+.|.++-...... .+++++..+.+++
T Consensus 191 ~T~~ff~~~~~-FGl----~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi 265 (493)
T PLN02435 191 ATRKFFESHKY-FGL----EADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYV 265 (493)
T ss_pred HHHHHHHhCCC-CCC----CccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEE
Confidence 46666653 22 220 11122222110000 0 000 1124677766554433 4666667789999
Q ss_pred EEEcCCcc-cccCHHHHHHHHHhcCCcEEEEEEecCCCCCCcceEEEE-CCCC--cEEEEEeCCCCCCCCCccccccccc
Q 018939 217 LILSGDHL-YRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKI-DRSG--QIIQFAEKPKGPDLKGMQCDTTLLG 292 (348)
Q Consensus 217 LIl~gD~l-~~~d~~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~i-d~~g--~V~~~~EKp~~~~~~~~~~~~~~~~ 292 (348)
.|.+.|.+ ...---.++..+...+.++.+-+++-... ...-|++.. +.+| .|+++.|-+...... ..-+++.|.
T Consensus 266 ~v~~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~~-~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~-~~~~~g~L~ 343 (493)
T PLN02435 266 DCYGVDNALVRVADPTFLGYFIDKGVASAAKVVRKAYP-QEKVGVFVRRGKGGPLTVVEYSELDQAMASA-INQQTGRLR 343 (493)
T ss_pred EEEecccccccccCHHHHHHHHhcCCceEEEeeecCCC-CCceeEEEEecCCCCEEEEEeccCCHHHHhc-cCccccccc
Confidence 99999994 54444558888999999998877654322 233565543 3444 578887765422110 000111111
Q ss_pred CCCCCCCCCCceeEeEEEEEeHHHHHHHHH
Q 018939 293 LSMPDAVKFPYIASMGVYLFRTDVLLNLLR 322 (348)
Q Consensus 293 ~~~~~~~~~~~~a~~GiYif~~~vl~~ll~ 322 (348)
-+..++..++|+-++|.++.+
T Consensus 344 ---------~~~gnI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 344 ---------YCWSNVCLHMFTLDFLNQVAN 364 (493)
T ss_pred ---------cchhhHHHhhccHHHHHHHHH
Confidence 246789999999999998754
No 102
>PLN02830 UDP-sugar pyrophosphorylase
Probab=98.38 E-value=3.4e-05 Score=80.97 Aligned_cols=221 Identities=14% Similarity=0.166 Sum_probs=130.4
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeC---CcchHHHHHHHHhHhc-----------C-CCeEEEEccCCch-hHH
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIG---GNYRLIDIPMSNCINS-----------G-FNKIFIMTQFNSF-SLN 154 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIg---Gk~pLId~~l~~l~~a-----------G-i~~IvVvt~~~~~-~l~ 154 (348)
.++.+|+||||.|||| ....||.++|++ |+ ++++..++++... + .-.++|.|+++.+ +..
T Consensus 127 ~kvavllLaGGlGTRL---G~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~ 202 (615)
T PLN02830 127 GNAAFVLVAGGLGERL---GYSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTL 202 (615)
T ss_pred CcEEEEEecCCccccc---CCCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHH
Confidence 5799999999999999 678999999983 67 8999999987664 1 1246888887754 455
Q ss_pred HHHHHhcc-CCC---Ccc-cCCCcEEEEecc-cCCC-----cCCcc-ccCCcHHHHHHHH--HHHHhhccCCCceEEEEc
Q 018939 155 RHLARSYN-LGN---GVN-FGDGFVEVLAAT-QTPG-----EAGKK-WFQGTADAVRQFI--WVFEDAKNKNVENVLILS 220 (348)
Q Consensus 155 ~hl~r~y~-~~~---g~~-~~~~~v~vl~~~-q~~~-----~~g~~-~~~Gta~Al~~~l--~~i~~~~~~~~e~vLIl~ 220 (348)
+++. .++ |+- .+. |.++.+-.+... -... ..... .+.|.++-..... ..++++...+.+++.|.+
T Consensus 203 ~~~~-~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~ 281 (615)
T PLN02830 203 KLLE-RNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQ 281 (615)
T ss_pred HHHH-HCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEe
Confidence 6664 332 321 011 111111111110 0000 00111 2456665544332 346666677899999999
Q ss_pred CCc-ccccCHHHHHHHHHhcCCcEEEEEEecCCCCCCcceEEEE--CCCCc----EEEEEeCCCCCCCCCcccccccccC
Q 018939 221 GDH-LYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKI--DRSGQ----IIQFAEKPKGPDLKGMQCDTTLLGL 293 (348)
Q Consensus 221 gD~-l~~~d~~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~i--d~~g~----V~~~~EKp~~~~~~~~~~~~~~~~~ 293 (348)
.|+ |.......++..+...++++.+-+++... ...-|++.. ..+|. |+++.|.+..-. ..++..+-+..
T Consensus 282 vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K~~--~E~vGvi~~~~~~dG~~l~~vVEYse~~~ll~--~a~~p~g~l~~ 357 (615)
T PLN02830 282 DTNGLVFKAIPAALGVSATKGFDMNSLAVPRKA--KEAIGAIAKLTHKDGREMVINVEYNQLDPLLR--ATGHPDGDVND 357 (615)
T ss_pred ccchhhhcccHHHhHHHHhcCCceEEEEEECCC--CcccceEEEEecCCCCeeeEEEeecccCHHHH--hccCCCccccc
Confidence 999 44444477899999999999988887643 334555443 23343 456666643211 00111010100
Q ss_pred CCCCCCCCCceeEeEEEEEeHHHHHHHHHh
Q 018939 294 SMPDAVKFPYIASMGVYLFRTDVLLNLLRS 323 (348)
Q Consensus 294 ~~~~~~~~~~~a~~GiYif~~~vl~~ll~~ 323 (348)
... ...+..|+...+++-..+..+|+.
T Consensus 358 ~~~---~s~FPgNtN~L~v~L~a~~~~l~~ 384 (615)
T PLN02830 358 ETG---YSPFPGNINQLILKLGPYVKELAK 384 (615)
T ss_pred ccc---cccCCCCceeeEeeHHHHHHHHHh
Confidence 000 123335899999999999988864
No 103
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.18 E-value=3.2e-05 Score=70.54 Aligned_cols=184 Identities=21% Similarity=0.308 Sum_probs=118.0
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCC-CeEEEEccCCchhHHHHHHHhccCCCCcc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGF-NKIFIMTQFNSFSLNRHLARSYNLGNGVN 168 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi-~~IvVvt~~~~~~l~~hl~r~y~~~~g~~ 168 (348)
+++..|||+|-|-++|. .-|-+.+++|+ |||.|++.++.+++. ++|+|-+- ++.|.+.- +.|
T Consensus 1 ~~~~iAiIpAR~gSKgI------~~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSsD--s~~Il~~A-~~y------- 63 (228)
T COG1083 1 MMKNIAIIPARGGSKGI------KNKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISSD--SEEILEEA-KKY------- 63 (228)
T ss_pred CcceEEEEeccCCCCcC------CccchHHhCCc-chHHHHHHHHhcCCccceEEEcCC--cHHHHHHH-HHh-------
Confidence 46778999999999998 45999999999 999999999999985 66665553 34444433 444
Q ss_pred cCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-c-cccCHHHHHHHHHhcCCcEEEE
Q 018939 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-L-YRMDYTEFLQKHIDTKADITVS 246 (348)
Q Consensus 169 ~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l-~~~d~~~ll~~h~~~~aditi~ 246 (348)
|.. +.++.+.... .+ ...|.+++..++..+.. ..+.++.+.+-. | ...++.+.++.+.++..+-.+.
T Consensus 64 -gak-~~~~Rp~~LA-~D----~ast~~~~lh~le~~~~----~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~s 132 (228)
T COG1083 64 -GAK-VFLKRPKELA-SD----RASTIDAALHALESFNI----DEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFS 132 (228)
T ss_pred -Ccc-ccccCChhhc-cC----chhHHHHHHHHHHHhcc----ccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEE
Confidence 111 1122111111 00 12355677777766642 334466666665 3 3457999999999988888888
Q ss_pred EEecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHH
Q 018939 247 CVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLN 319 (348)
Q Consensus 247 ~~~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ 319 (348)
+.+.... .|-.... ++|.|..+.|.+..... ...+. .-|..+..+|+++++.|..
T Consensus 133 a~e~e~~---p~k~f~~-~~~~~~~~~~~~~~~~r-----rQ~Lp---------k~Y~~NgaiYi~~~~~l~e 187 (228)
T COG1083 133 AVECEHH---PYKAFSL-NNGEVKPVNEDPDFETR-----RQDLP---------KAYRENGAIYINKKDALLE 187 (228)
T ss_pred Eeecccc---hHHHHHh-cCCceeecccCCccccc-----cccch---------hhhhhcCcEEEehHHHHhh
Confidence 8887642 2322222 34888888887743321 00011 1366788999999998865
No 104
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=97.94 E-value=0.00024 Score=64.36 Aligned_cols=181 Identities=23% Similarity=0.305 Sum_probs=104.6
Q ss_pred eEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcC-CCeEEEEccCCchhHHHHHHHhccCCCCcccCCC
Q 018939 94 AAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 94 ~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aG-i~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
.|||+|-|-++|+ .-|.+.+++|+ |||+|+++.+.+++ +++|+|.|.. +.+.+.+ +.| | .
T Consensus 1 iaiIpAR~gS~rl------p~Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaTd~--~~i~~~~-~~~--------g-~ 61 (217)
T PF02348_consen 1 IAIIPARGGSKRL------PGKNLKPLGGK-PLIEYVIERAKQSKLIDEIVVATDD--EEIDDIA-EEY--------G-A 61 (217)
T ss_dssp EEEEEE-SSSSSS------TTGGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEESS--HHHHHHH-HHT--------T-S
T ss_pred CEEEecCCCCCCC------CcchhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeCCC--HHHHHHH-HHc--------C-C
Confidence 3899999999999 45999999999 99999999999975 6899888864 3444444 454 2 1
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-cccc-CHHHHHHHHHhcCCc-EEEEEEe
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRM-DYTEFLQKHIDTKAD-ITVSCVP 249 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~-d~~~ll~~h~~~~ad-iti~~~~ 249 (348)
.+.+.. .... .++. ....++..+. ....+.++.+.||. +.+. .+..+++.+.+...+ +.-.+.+
T Consensus 62 ~v~~~~-~~~~--------~~~~-r~~~~~~~~~---~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~~~~~ 128 (217)
T PF02348_consen 62 KVIFRR-GSLA--------DDTD-RFIEAIKHFL---ADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISNLVDP 128 (217)
T ss_dssp EEEE---TTSS--------SHHH-HHHHHHHHHT---CSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEEEEEE
T ss_pred eeEEcC-hhhc--------CCcc-cHHHHHHHhh---hhHHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhcccccc
Confidence 132222 1111 2333 3333333332 11234888899999 4444 478899999888776 3333333
Q ss_pred cCC----CCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHH-HHHH
Q 018939 250 MDD----CRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTD-VLLN 319 (348)
Q Consensus 250 ~~~----~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~-vl~~ 319 (348)
... ...... ....+.++....+.+.+....... . .. ....++-..++|.++.. .+..
T Consensus 129 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~-~~~~~~~~~~~~~~~~~~~~~~ 190 (217)
T PF02348_consen 129 VGSSVEIFNFNPL-KVLFDDDGLELYFSEHVIPYIRRN-------P----EE-FKYFYIRQVGIYAFRKEMFLER 190 (217)
T ss_dssp ECSHHHHTSTTST-EEEECTTSBEEEEESSESSECHHH-------H----CS-SSSTEEEEEEEEEEEHHHHHHH
T ss_pred ccchhhcccccce-EEEeccccchhhcccCCCcccccc-------c----cc-cccccccccccccccccccccc
Confidence 221 112222 233455566666666543321100 0 00 00136788999999997 4443
No 105
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=97.75 E-value=0.0005 Score=63.16 Aligned_cols=119 Identities=23% Similarity=0.396 Sum_probs=79.9
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcC-CCeEEEEccCCchh-HHHHHHHhccCCCCcc
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNSFS-LNRHLARSYNLGNGVN 168 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aG-i~~IvVvt~~~~~~-l~~hl~r~y~~~~g~~ 168 (348)
+++.+||-|-=-+||| .-|.|+|++|. |||+++++++.++. +++++|.|....++ ......+.+
T Consensus 2 ~~I~~IiQARmgStRL------pgKvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~------- 67 (241)
T COG1861 2 SMILVIIQARMGSTRL------PGKVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH------- 67 (241)
T ss_pred CcEEEEeeecccCccC------CcchhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc-------
Confidence 3444555444456677 45999999999 99999999999975 68999999877653 222222222
Q ss_pred cCCCcEEEEecccCCCcCCccccCCcHH-HHHHHHHHHHhhccCCCceEEEEcCCc-ccccC-HHHHHHHHHhcCCcEE
Q 018939 169 FGDGFVEVLAATQTPGEAGKKWFQGTAD-AVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHIDTKADIT 244 (348)
Q Consensus 169 ~~~~~v~vl~~~q~~~~~g~~~~~Gta~-Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~d-~~~ll~~h~~~~adit 244 (348)
| +.|. .|+.+ -+..+...++. .+.+.++=+.||. +.+.+ ....++.|.++|+|-+
T Consensus 68 -G---~~vf--------------rGs~~dVL~Rf~~a~~a---~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY~ 125 (241)
T COG1861 68 -G---FYVF--------------RGSEEDVLQRFIIAIKA---YSADVVVRVTGDNPFLDPELVDAAVDRHLEKGADYV 125 (241)
T ss_pred -C---eeEe--------------cCCHHHHHHHHHHHHHh---cCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCccc
Confidence 1 3332 45554 44445544443 3556888899999 45555 5678999999999854
No 106
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.66 E-value=0.00058 Score=60.43 Aligned_cols=99 Identities=16% Similarity=0.213 Sum_probs=64.9
Q ss_pred CCccceeeCC--cchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccc
Q 018939 113 RAKPAVPIGG--NYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKW 190 (348)
Q Consensus 113 ~PKpllpIgG--k~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~ 190 (348)
.+|++++++| + |||+|+++.+. ..+++++|+++... .+ .. + + +.++.+ +..
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~-~~~~~iivv~~~~~-~~-----~~--~------~---~~~i~d-~~~------- 55 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVG-QRCAPVFVMAAPGQ-PL-----PE--L------P---APVLRD-ELR------- 55 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHh-hcCCEEEEECCCCc-cc-----cc--C------C---CCEecc-CCC-------
Confidence 5899999999 9 99999999876 45899999997642 11 00 0 1 234432 221
Q ss_pred cCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-ccccC-HHHHHHHHHhcCC
Q 018939 191 FQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHIDTKA 241 (348)
Q Consensus 191 ~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~d-~~~ll~~h~~~~a 241 (348)
..|...++..++..... ...+.++|+.||+ +.+.+ +..+++.+...++
T Consensus 56 g~gpl~~~~~gl~~~~~---~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~~~ 105 (178)
T PRK00576 56 GLGPLPATGRGLRAAAE---AGARLAFVCAVDMPYLTVELIDDLARPAAQTDA 105 (178)
T ss_pred CCCcHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCHHHHHHHHHHhhcCCC
Confidence 15777777766654321 2458999999999 44555 6677776554444
No 107
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=96.53 E-value=0.0062 Score=61.65 Aligned_cols=214 Identities=22% Similarity=0.247 Sum_probs=111.9
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcc--hHHHHHHHHhHhc----------CCC-eEEEEccCCc-hhHHHH
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNY--RLIDIPMSNCINS----------GFN-KIFIMTQFNS-FSLNRH 156 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~--pLId~~l~~l~~a----------Gi~-~IvVvt~~~~-~~l~~h 156 (348)
.++.+|++|||.|||+ ....||.+.|+|..+ .++++..+.+... |.. ..+|.|.... +.-.++
T Consensus 96 ~~~a~~llaGgqgtRL---g~~~pkg~~~~G~~~~~slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~~ 172 (477)
T KOG2388|consen 96 GKVAVVLLAGGQGTRL---GSSGPKGCYPIGLPSGKSLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLEY 172 (477)
T ss_pred CcceEEEeccCceeee---ccCCCcceeecCCccccchhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHhH
Confidence 4688999999999999 678999999998531 4888877765541 211 2355565543 334444
Q ss_pred HHHhccCCCCcccCCCcEEEEecccCC----CcCCc----------cccCCcHHHHHHHHHHHHhhccCCCceEEEEcCC
Q 018939 157 LARSYNLGNGVNFGDGFVEVLAATQTP----GEAGK----------KWFQGTADAVRQFIWVFEDAKNKNVENVLILSGD 222 (348)
Q Consensus 157 l~r~y~~~~g~~~~~~~v~vl~~~q~~----~~~g~----------~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD 222 (348)
+.. ...||.....|....|.. ..+|+ .-+.|.++..+.+...+++....+..++=|.+-|
T Consensus 173 f~~------~~~FGl~~~qv~~f~Q~~l~c~~~~gk~~le~k~~~a~ap~gngg~y~ai~~~l~dm~~rgi~~~hiy~Vd 246 (477)
T KOG2388|consen 173 FES------HKYFGLKPEQVTFFQQGKLPCLDLDGKFILEQKNSLAAAPDGNGGLYRAIKDQLEDMAARGIFYDHIYCVD 246 (477)
T ss_pred Hhh------cCCCCCChhHeeeeecccccccccCCceeccCccchhcCCCCCcHHHHHHHhhhhHHHhhcccEEEEEEec
Confidence 432 112221111111111211 00111 1134666666655555666555667777777777
Q ss_pred cc-cccCHHHHHHHHHhcCCcEEEEEEecCCCCCCcceEEEECCCC--cEEEEEeCCCCCCCCCcccccccccCCCCCCC
Q 018939 223 HL-YRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSG--QIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAV 299 (348)
Q Consensus 223 ~l-~~~d~~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~id~~g--~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~ 299 (348)
++ ....-..++-.....++|+.-.+++-.+. ..-.|++..+++| .|++++|..... .+.--.|++.+-
T Consensus 247 nvL~k~aDP~fiG~~it~~~d~~~k~V~k~~p-~E~vG~~~~~~~G~~~vvEYsEi~~~~-a~~~~~d~g~l~------- 317 (477)
T KOG2388|consen 247 NVLLKVADPVFIGFSITKEADVAAKVVPKINP-GEVVGIVALKGQGTPLVVEYSELDAEL-AKAKAPDGGRLL------- 317 (477)
T ss_pred ceeeEecccceeeEEeechhhHhhhhccccCC-CCceEEEEecCCCceeEEEecccCHHH-HhhcccccCccc-------
Confidence 73 33222234444555566655444443332 3447788777645 556666643211 111111111110
Q ss_pred CCCceeEeEEEEEeHHHHHHHHHhh
Q 018939 300 KFPYIASMGVYLFRTDVLLNLLRSS 324 (348)
Q Consensus 300 ~~~~~a~~GiYif~~~vl~~ll~~~ 324 (348)
...-+.--++|..++|.+.-+.+
T Consensus 318 --~~agnI~nh~ft~dFLkk~~~~~ 340 (477)
T KOG2388|consen 318 --FNAGNICNHFFTLDFLKKVTRAS 340 (477)
T ss_pred --cCCccHHHHHHhhHHHHHhhhcc
Confidence 12234445777778888765544
No 108
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=96.41 E-value=0.22 Score=49.88 Aligned_cols=214 Identities=15% Similarity=0.280 Sum_probs=120.5
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhc----CCC-eEEEEccCCchhHHHHHHHhccCCC
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINS----GFN-KIFIMTQFNSFSLNRHLARSYNLGN 165 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~a----Gi~-~IvVvt~~~~~~l~~hl~r~y~~~~ 165 (348)
++...+=|-||.||-| ....||.++++-..+.++|-.+.+..+. +++ ..++..+++.++=...+-+.| -+.
T Consensus 102 ~KLavlKLNGGlGttm---Gc~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky-~~~ 177 (498)
T KOG2638|consen 102 NKLAVLKLNGGLGTTM---GCKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKY-AGS 177 (498)
T ss_pred hheEEEEecCCcCCcc---ccCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHh-cCC
Confidence 5677888999999999 6789999999976668999888877664 332 467788888765445554555 122
Q ss_pred Cccc---CCCc---E---EEEecccCCCc-CCcccc-CCcHHHHHHH--HHHHHhhccCCCceEEEEcCCcccc-cCHHH
Q 018939 166 GVNF---GDGF---V---EVLAATQTPGE-AGKKWF-QGTADAVRQF--IWVFEDAKNKNVENVLILSGDHLYR-MDYTE 231 (348)
Q Consensus 166 g~~~---~~~~---v---~vl~~~q~~~~-~g~~~~-~Gta~Al~~~--l~~i~~~~~~~~e~vLIl~gD~l~~-~d~~~ 231 (348)
.+.+ .+.. | +.++.....++ +-..|| -|.++-.... ...++..-..+.|+++|.+.|.+-. .|+.
T Consensus 178 kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvDL~- 256 (498)
T KOG2638|consen 178 KVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVDLN- 256 (498)
T ss_pred ceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceeeHH-
Confidence 2221 1100 0 11111110111 223464 5665543322 1223333335789999999999853 5654
Q ss_pred HHHHHHhcCCcEEEEEEecCCCCCCcce-EEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEE
Q 018939 232 FLQKHIDTKADITVSCVPMDDCRASDYG-LMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVY 310 (348)
Q Consensus 232 ll~~h~~~~aditi~~~~~~~~~~~~~g-~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiY 310 (348)
+++...+.+.+..|=+++-.... ..-| ++..+..=|..++..-|.....+-.-+. .-.+.++.--
T Consensus 257 ILn~~i~~~~ey~MEvTdKT~aD-vKgGtLi~y~G~lrlLEiaQVP~ehv~eFkS~k-------------kFkifNTNNl 322 (498)
T KOG2638|consen 257 ILNHVINNNIEYLMEVTDKTRAD-VKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSIK-------------KFKIFNTNNL 322 (498)
T ss_pred HHHHHhcCCCceEEEecccchhh-cccceEEeecCEEEEEEeccCChhHhhhhccce-------------eEEEeccCCe
Confidence 45555666777666555533211 1122 2333322355666665543211100111 1246788888
Q ss_pred EEeHHHHHHHHHh
Q 018939 311 LFRTDVLLNLLRS 323 (348)
Q Consensus 311 if~~~vl~~ll~~ 323 (348)
|++-..+.+++++
T Consensus 323 WinLkavKrlve~ 335 (498)
T KOG2638|consen 323 WINLKAVKKLVEE 335 (498)
T ss_pred EEehHHHHHHhhc
Confidence 8888888888765
No 109
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=96.23 E-value=0.13 Score=41.49 Aligned_cols=99 Identities=13% Similarity=0.089 Sum_probs=66.7
Q ss_pred ceeeCCcchHHHHHHHHhHhcC--CCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCc
Q 018939 117 AVPIGGNYRLIDIPMSNCINSG--FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGT 194 (348)
Q Consensus 117 llpIgGk~pLId~~l~~l~~aG--i~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gt 194 (348)
++|..|+.+++.+.++.+.+.+ ..+++|+.+...+...+.+.+.... .. .+..+.... ..|.
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~---------~~g~ 65 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK------DP-RVIRVINEE---------NQGL 65 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc------CC-CeEEEEecC---------CCCh
Confidence 3566666689999999999987 7789998888777666666543310 00 122222111 2588
Q ss_pred HHHHHHHHHHHHhhccCCCceEEEEcCCcccccCH-HHHHHHHH
Q 018939 195 ADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDY-TEFLQKHI 237 (348)
Q Consensus 195 a~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~-~~ll~~h~ 237 (348)
+.++..++... ..+.++++.+|.++..++ ..++..+.
T Consensus 66 ~~~~~~~~~~~------~~d~v~~~d~D~~~~~~~~~~~~~~~~ 103 (156)
T cd00761 66 AAARNAGLKAA------RGEYILFLDADDLLLPDWLERLVAELL 103 (156)
T ss_pred HHHHHHHHHHh------cCCEEEEECCCCccCccHHHHHHHHHh
Confidence 89998887766 368999999999998874 44434443
No 110
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=95.15 E-value=0.15 Score=45.34 Aligned_cols=85 Identities=16% Similarity=0.188 Sum_probs=57.6
Q ss_pred hHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHH
Q 018939 125 RLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWV 204 (348)
Q Consensus 125 pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~ 204 (348)
|||+|+++.+..+++++++|+++. +.+.+++ ..+ + ++++.... .|...+++.++..
T Consensus 31 ~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~-~~~--------~---v~~i~~~~----------~G~~~si~~al~~ 86 (195)
T TIGR03552 31 AMLRDVITALRGAGAGAVLVVSPD--PALLEAA-RNL--------G---APVLRDPG----------PGLNNALNAALAE 86 (195)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC--HHHHHHH-Hhc--------C---CEEEecCC----------CCHHHHHHHHHHH
Confidence 899999999999888888888874 3333332 111 1 34443211 2889999999877
Q ss_pred HHhhccCCCceEEEEcCCcc-cc-cCHHHHHHHHH
Q 018939 205 FEDAKNKNVENVLILSGDHL-YR-MDYTEFLQKHI 237 (348)
Q Consensus 205 i~~~~~~~~e~vLIl~gD~l-~~-~d~~~ll~~h~ 237 (348)
+.. ..+.++++.||+. .. ..+..+++.+.
T Consensus 87 ~~~----~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 87 ARE----PGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred hhc----cCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 641 2368999999994 34 45778877653
No 111
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=94.08 E-value=1.2 Score=36.75 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=70.6
Q ss_pred ceeeCCcchHHHHHHHHhHhc--CCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCc
Q 018939 117 AVPIGGNYRLIDIPMSNCINS--GFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGT 194 (348)
Q Consensus 117 llpIgGk~pLId~~l~~l~~a--Gi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gt 194 (348)
.+|.-++...+...++.+.+. ...+|+|+-........+.+.+.. . ....++++...+. .|-
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~--~-----~~~~i~~i~~~~n---------~g~ 66 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYA--E-----SDPNIRYIRNPEN---------LGF 66 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHH--C-----CSTTEEEEEHCCC---------SHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEecccccccccccccccc--c-----ccccccccccccc---------ccc
Confidence 356666656888888888886 345676666555444444443322 1 1123677654432 477
Q ss_pred HHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcEEEEEEe
Q 018939 195 ADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVSCVP 249 (348)
Q Consensus 195 a~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~aditi~~~~ 249 (348)
+.+...++.... .++++++..|.++..+ +..+++.+.+.+.++.+....
T Consensus 67 ~~~~n~~~~~a~------~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 116 (169)
T PF00535_consen 67 SAARNRGIKHAK------GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVI 116 (169)
T ss_dssp HHHHHHHHHH--------SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEE
T ss_pred cccccccccccc------eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 888888877663 5799999999988877 788888888877776555444
No 112
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=89.90 E-value=0.53 Score=52.36 Aligned_cols=108 Identities=21% Similarity=0.278 Sum_probs=78.2
Q ss_pred eEEEEcCCcccccC--HHHHHHHHHhcCCcEEEEEEecCCCCCCcceEEEECCC--CcEEEEEeCCCCCCCCCccccccc
Q 018939 215 NVLILSGDHLYRMD--YTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRS--GQIIQFAEKPKGPDLKGMQCDTTL 290 (348)
Q Consensus 215 ~vLIl~gD~l~~~d--~~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~id~~--g~V~~~~EKp~~~~~~~~~~~~~~ 290 (348)
.++|.+||.+...+ .++ -.++|++....+.+.+-.++.|++..|.+ +++..|..||..++..++.
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~----- 222 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLS----- 222 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhh-----
Confidence 79999999865443 222 24577777777766666789999999987 6899999999877642221
Q ss_pred ccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCC------CCcchhhhhHHhccc
Q 018939 291 LGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP------LSNDFGSEIIPASVK 341 (348)
Q Consensus 291 ~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~------~~~d~~~diip~l~~ 341 (348)
.....+.++|+|+|+.+....|++..+. ...|+.+|++..|-.
T Consensus 223 --------~~~~~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~ 271 (974)
T PRK13412 223 --------KTHLFLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGT 271 (974)
T ss_pred --------cCCeEEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCC
Confidence 1234677999999999999888866431 257888888876543
No 113
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=88.81 E-value=10 Score=33.83 Aligned_cols=105 Identities=13% Similarity=0.164 Sum_probs=65.7
Q ss_pred ceeeCCcc-hHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcH
Q 018939 117 AVPIGGNY-RLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTA 195 (348)
Q Consensus 117 llpIgGk~-pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta 195 (348)
.+|.-+.. ..|...++.+.+....+|+|+.....+.....+.+.. . ...+.++.... .|-+
T Consensus 5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~---~-----~~~~~v~~~~~----------~g~~ 66 (235)
T cd06434 5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTV---K-----YGGIFVITVPH----------PGKR 66 (235)
T ss_pred EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhc---c-----CCcEEEEecCC----------CChH
Confidence 34555654 6888888888886556787777766655555542221 0 11244443211 4667
Q ss_pred HHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcEEEEE
Q 018939 196 DAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVSC 247 (348)
Q Consensus 196 ~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~aditi~~ 247 (348)
.++..++... ..+.++++.+|..+..+ +..+++.+. +.++.+++
T Consensus 67 ~a~n~g~~~a------~~d~v~~lD~D~~~~~~~l~~l~~~~~--~~~v~~v~ 111 (235)
T cd06434 67 RALAEGIRHV------TTDIVVLLDSDTVWPPNALPEMLKPFE--DPKVGGVG 111 (235)
T ss_pred HHHHHHHHHh------CCCEEEEECCCceeChhHHHHHHHhcc--CCCEeEEc
Confidence 7777776544 46999999999999887 567776655 33444443
No 114
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=88.74 E-value=9.2 Score=32.58 Aligned_cols=108 Identities=14% Similarity=0.107 Sum_probs=64.3
Q ss_pred eeeCCcchHHHHHHHHhHhc----CCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCC
Q 018939 118 VPIGGNYRLIDIPMSNCINS----GFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQG 193 (348)
Q Consensus 118 lpIgGk~pLId~~l~~l~~a----Gi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~G 193 (348)
+|.-+....|...++.+.+. ...+|+|+-........+.+. .+ .. .+. .+.++..... .|
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~-~~-~~---~~~--~~~~~~~~~n---------~G 66 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIAR-EL-AA---RVP--RVRVIRLSRN---------FG 66 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHH-HH-HH---hCC--CeEEEEccCC---------CC
Confidence 44455434666777777775 245677776554433333332 22 00 111 1344443332 57
Q ss_pred cHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcEEEEE
Q 018939 194 TADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVSC 247 (348)
Q Consensus 194 ta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~aditi~~ 247 (348)
-+.+...++... ..+.++++.+|..+..+ +..++....+.+.++.+..
T Consensus 67 ~~~a~n~g~~~a------~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 67 KGAAVRAGFKAA------RGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred ccHHHHHHHHHh------cCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 788888887655 35999999999987766 6778876566666665444
No 115
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=88.21 E-value=13 Score=30.39 Aligned_cols=101 Identities=13% Similarity=0.073 Sum_probs=60.1
Q ss_pred eeeCCcchHHHHHHHHhHhcC--CCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcH
Q 018939 118 VPIGGNYRLIDIPMSNCINSG--FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTA 195 (348)
Q Consensus 118 lpIgGk~pLId~~l~~l~~aG--i~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta 195 (348)
+|.-+....|...++.+.+.. .-+++|+-........+.+.+.. ... ...+.++.... ..|-+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~--~~~----~~~~~~~~~~~---------~~g~~ 67 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELA--ALY----IRRVLVVRDKE---------NGGKA 67 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHh--ccc----cceEEEEEecc---------cCCch
Confidence 566665468888888888864 34666665555443334443221 100 01133333222 15778
Q ss_pred HHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhc
Q 018939 196 DAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDT 239 (348)
Q Consensus 196 ~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~ 239 (348)
.+...++... ..+.++++.+|.++..+ +..++..+.+.
T Consensus 68 ~~~n~~~~~~------~~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 68 GALNAGLRHA------KGDIVVVLDADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred HHHHHHHHhc------CCCEEEEECCCCCcChHHHHHHHHHhccC
Confidence 8888887655 46899999999988776 55664555443
No 116
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.13 E-value=13 Score=30.54 Aligned_cols=98 Identities=11% Similarity=0.066 Sum_probs=63.3
Q ss_pred eeeCCcchHHHHHHHHhHhcC--CCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcH
Q 018939 118 VPIGGNYRLIDIPMSNCINSG--FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTA 195 (348)
Q Consensus 118 lpIgGk~pLId~~l~~l~~aG--i~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta 195 (348)
+|.-++..++...++.+.+.. ..+++|+.........+.+.+.+ . .+.++.... ..|.+
T Consensus 3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~---~-------~~~~~~~~~---------~~g~~ 63 (166)
T cd04186 3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELF---P-------EVRLIRNGE---------NLGFG 63 (166)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhC---C-------CeEEEecCC---------CcChH
Confidence 566666568889999988853 45677766655444444443322 1 245543221 25788
Q ss_pred HHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcC
Q 018939 196 DAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTK 240 (348)
Q Consensus 196 ~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~ 240 (348)
.++..++... ..+.++++..|..+..+ +..+++.+.+..
T Consensus 64 ~a~n~~~~~~------~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~ 103 (166)
T cd04186 64 AGNNQGIREA------KGDYVLLLNPDTVVEPGALLELLDAAEQDP 103 (166)
T ss_pred HHhhHHHhhC------CCCEEEEECCCcEECccHHHHHHHHHHhCC
Confidence 8888887665 46999999999988776 667776655443
No 117
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=87.81 E-value=15 Score=33.45 Aligned_cols=49 Identities=22% Similarity=0.211 Sum_probs=36.9
Q ss_pred CCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcEEEE
Q 018939 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVS 246 (348)
Q Consensus 192 ~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~aditi~ 246 (348)
.|-+.|+..++... ..+.++++.+|..++.+ +..+++...+.++++.+.
T Consensus 79 ~G~~~a~n~g~~~a------~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 128 (243)
T PLN02726 79 LGLGTAYIHGLKHA------SGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTG 128 (243)
T ss_pred CCHHHHHHHHHHHc------CCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 47778888776544 46899999999988765 678888776667776544
No 118
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=87.76 E-value=14 Score=32.91 Aligned_cols=109 Identities=12% Similarity=0.170 Sum_probs=66.0
Q ss_pred ceeeCCcchHHHHHHHHhHhcCC----CeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccC
Q 018939 117 AVPIGGNYRLIDIPMSNCINSGF----NKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQ 192 (348)
Q Consensus 117 llpIgGk~pLId~~l~~l~~aGi----~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~ 192 (348)
.+|.-+..+.+...++.+.+... -+|+|+-+...++..+.+. .+ ... ...+.++.... .
T Consensus 5 iip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~-~~-~~~-----~~~v~~i~~~~----------~ 67 (249)
T cd02525 5 IIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQ-EY-AAK-----DPRIRLIDNPK----------R 67 (249)
T ss_pred EEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHH-HH-Hhc-----CCeEEEEeCCC----------C
Confidence 34555654677888888877543 3677776655554444443 22 111 11255554221 3
Q ss_pred CcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcEEEEEE
Q 018939 193 GTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVSCV 248 (348)
Q Consensus 193 Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~aditi~~~ 248 (348)
|-+.++..++... ..+.++++.+|.++..+ +..+++.+.+.+.++.....
T Consensus 68 ~~~~a~N~g~~~a------~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~ 118 (249)
T cd02525 68 IQSAGLNIGIRNS------RGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPM 118 (249)
T ss_pred CchHHHHHHHHHh------CCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecce
Confidence 5566777776554 46999999999988776 67788766666665544433
No 119
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=85.76 E-value=16 Score=32.24 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=38.2
Q ss_pred CCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcEEEEE
Q 018939 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVSC 247 (348)
Q Consensus 192 ~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~aditi~~ 247 (348)
.|-+.|+..++... ..+.++++.+|..++.+ +..+++...+.+.++.+..
T Consensus 68 ~G~~~a~~~g~~~a------~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 118 (211)
T cd04188 68 RGKGGAVRAGMLAA------RGDYILFADADLATPFEELEKLEEALKTSGYDIAIGS 118 (211)
T ss_pred CCcHHHHHHHHHHh------cCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 58889999887665 35999999999988766 7788877566676665544
No 120
>PRK10073 putative glycosyl transferase; Provisional
Probab=85.62 E-value=12 Score=36.47 Aligned_cols=106 Identities=16% Similarity=0.179 Sum_probs=63.1
Q ss_pred eeeCCcchHHHHHHHHhHhcCCC--eEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcH
Q 018939 118 VPIGGNYRLIDIPMSNCINSGFN--KIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTA 195 (348)
Q Consensus 118 lpIgGk~pLId~~l~~l~~aGi~--~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta 195 (348)
+|+-+....|...++.+.+.... +|+|+-....+.-. .+.+.|. . ....+.++. +. ..|-+
T Consensus 12 IP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~-~i~~~~~-~-----~~~~i~vi~--~~--------n~G~~ 74 (328)
T PRK10073 12 IPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSV-EIAKHYA-E-----NYPHVRLLH--QA--------NAGVS 74 (328)
T ss_pred EeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHH-HHHHHHH-h-----hCCCEEEEE--CC--------CCChH
Confidence 45545446888888888876443 45555332222111 2223331 0 012366664 22 14777
Q ss_pred HHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcEEEE
Q 018939 196 DAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVS 246 (348)
Q Consensus 196 ~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~aditi~ 246 (348)
.|.-.++... ..++++++.+|-.+..+ +..+++...+.+.|+.++
T Consensus 75 ~arN~gl~~a------~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~ 120 (328)
T PRK10073 75 VARNTGLAVA------TGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQC 120 (328)
T ss_pred HHHHHHHHhC------CCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEE
Confidence 8877776554 46999999999987776 677787776677777554
No 121
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=85.24 E-value=0.48 Score=47.96 Aligned_cols=116 Identities=20% Similarity=0.329 Sum_probs=77.6
Q ss_pred CceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEecCCCCCCcceEEEECCCC---------cEEEEEeCCCCCCCCC
Q 018939 213 VENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDRSG---------QIIQFAEKPKGPDLKG 283 (348)
Q Consensus 213 ~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~id~~g---------~V~~~~EKp~~~~~~~ 283 (348)
..-++|+++|+++...-...+. + .+++++++..|.+-+.+++.|+.++|+++ .|..|..||..++.
T Consensus 53 ppGv~V~s~D~vl~~~~~~~~~-~--~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem-- 127 (414)
T PF07959_consen 53 PPGVLVCSGDMVLSVPDDPLID-W--DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEM-- 127 (414)
T ss_pred hcceEEEecccccccCccccCC-C--CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHH--
Confidence 3568999999654332111221 2 34788889999887778999999999998 89999999987653
Q ss_pred cccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhC----------------CCCcchhhhhHHhccc
Q 018939 284 MQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSY----------------PLSNDFGSEIIPASVK 341 (348)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~----------------~~~~d~~~diip~l~~ 341 (348)
+-...+.. .......+|++.|+.+....++.-.. +-..++..|++..+..
T Consensus 128 -~~~~av~~-------~~~~~ldsG~~~~s~~~~e~L~~~~~~~~~~~~~y~~~~g~~~~ei~lY~Dfl~aLg~ 193 (414)
T PF07959_consen 128 -RASGAVLP-------DGNVLLDSGIVFFSSKAVESLLYLHVSPPLDLCTYYGLSGALPCEIDLYGDFLQALGP 193 (414)
T ss_pred -HhCCcccC-------CCcccccccceeccHHHHHHHHHhccCchHhhhhhhhhcCCccceehHHHHHHHHhcC
Confidence 21122221 12345689999999998887764221 1135667788877764
No 122
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=82.72 E-value=35 Score=30.86 Aligned_cols=111 Identities=9% Similarity=0.058 Sum_probs=62.8
Q ss_pred ceeeCCcchHHHHHHHHhHhcCC----CeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccC
Q 018939 117 AVPIGGNYRLIDIPMSNCINSGF----NKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQ 192 (348)
Q Consensus 117 llpIgGk~pLId~~l~~l~~aGi----~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~ 192 (348)
++|.-+....|...++.+.+... -+|+|+.....+.-.+.+ +.+... ..++++..... ...
T Consensus 6 iIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~-~~~~~~-------~~~~i~~~~~~-------~~~ 70 (241)
T cd06427 6 LVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAA-RALRLP-------SIFRVVVVPPS-------QPR 70 (241)
T ss_pred EEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHH-HHhccC-------CCeeEEEecCC-------CCC
Confidence 34555543567777888777532 145555443333333333 333110 01222221111 124
Q ss_pred CcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcEEEEEE
Q 018939 193 GTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVSCV 248 (348)
Q Consensus 193 Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~aditi~~~ 248 (348)
|-+.|+..++... ..+.++++.+|.....+ +..++..+.+.+.++.++..
T Consensus 71 G~~~a~n~g~~~a------~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~ 121 (241)
T cd06427 71 TKPKACNYALAFA------RGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQA 121 (241)
T ss_pred chHHHHHHHHHhc------CCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeC
Confidence 7788888887654 35999999999998877 66888777655566655543
No 123
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=82.23 E-value=30 Score=30.42 Aligned_cols=107 Identities=11% Similarity=0.087 Sum_probs=62.4
Q ss_pred eeeCCcchHHHHHHHHhHhcC---CCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCc
Q 018939 118 VPIGGNYRLIDIPMSNCINSG---FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGT 194 (348)
Q Consensus 118 lpIgGk~pLId~~l~~l~~aG---i~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gt 194 (348)
+|.-+....|...++.+.+.- .-+|+||-....+...+.+ +.| ... ...+.++.... ..|-
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~-~~~-~~~-----~~~i~~~~~~~---------n~G~ 66 (224)
T cd06442 3 IPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIV-REL-AKE-----YPRVRLIVRPG---------KRGL 66 (224)
T ss_pred EeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHH-HHH-HHh-----CCceEEEecCC---------CCCh
Confidence 455555456777777777642 2456666543333333332 222 000 11245544222 2578
Q ss_pred HHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcEEEE
Q 018939 195 ADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVS 246 (348)
Q Consensus 195 a~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~aditi~ 246 (348)
+.|+-.++... ..+.++++.+|..+..+ +..+++.....+.++.+.
T Consensus 67 ~~a~n~g~~~a------~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g 113 (224)
T cd06442 67 GSAYIEGFKAA------RGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIG 113 (224)
T ss_pred HHHHHHHHHHc------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 88888887655 35899999999987766 677887766666665443
No 124
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=80.90 E-value=34 Score=32.29 Aligned_cols=104 Identities=13% Similarity=0.099 Sum_probs=62.6
Q ss_pred eeeCCcc-hHHHHHHHHhHhcCC----CeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccC
Q 018939 118 VPIGGNY-RLIDIPMSNCINSGF----NKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQ 192 (348)
Q Consensus 118 lpIgGk~-pLId~~l~~l~~aGi----~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~ 192 (348)
+|.-+.. ..|...++.+.+..- .+|+||-....+.....+.+.+ ... ....++++..... .
T Consensus 4 Ip~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~-~~~----~~~~v~vi~~~~n---------~ 69 (299)
T cd02510 4 IIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEY-YKK----YLPKVKVLRLKKR---------E 69 (299)
T ss_pred EEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHH-Hhh----cCCcEEEEEcCCC---------C
Confidence 4555554 578888888876421 3677776554433333332211 000 0113667654332 5
Q ss_pred CcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCC
Q 018939 193 GTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKA 241 (348)
Q Consensus 193 Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~a 241 (348)
|-+.|.-.++... ..+.++++++|..+..+ +..+++.+.+...
T Consensus 70 G~~~a~N~g~~~A------~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 70 GLIRARIAGARAA------TGDVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred CHHHHHHHHHHHc------cCCEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 7777877776554 36999999999988776 7788887765544
No 125
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=80.15 E-value=45 Score=30.05 Aligned_cols=100 Identities=16% Similarity=0.222 Sum_probs=58.5
Q ss_pred ceeeCCcchHHHHHHHHhHhcCC----CeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccC
Q 018939 117 AVPIGGNYRLIDIPMSNCINSGF----NKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQ 192 (348)
Q Consensus 117 llpIgGk~pLId~~l~~l~~aGi----~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~ 192 (348)
++|.-+....|...++.+.+... -+++|+.....+...+.+ +.+ ... .+.++.... ..
T Consensus 34 vip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~-~~~--~~~------~v~~i~~~~---------~~ 95 (251)
T cd06439 34 IIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIA-REY--ADK------GVKLLRFPE---------RR 95 (251)
T ss_pred EEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHH-HHH--hhC------cEEEEEcCC---------CC
Confidence 44555543566667777666432 256666554443333333 333 110 245544322 14
Q ss_pred CcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcC
Q 018939 193 GTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTK 240 (348)
Q Consensus 193 Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~ 240 (348)
|-+.++..++... ..+.++++.+|.+...+ +..+++...+.+
T Consensus 96 g~~~a~n~gi~~a------~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~ 138 (251)
T cd06439 96 GKAAALNRALALA------TGEIVVFTDANALLDPDALRLLVRHFADPS 138 (251)
T ss_pred ChHHHHHHHHHHc------CCCEEEEEccccCcCHHHHHHHHHHhcCCC
Confidence 7788888887655 35999999999988776 677776664333
No 126
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=78.60 E-value=43 Score=28.88 Aligned_cols=104 Identities=15% Similarity=0.201 Sum_probs=57.9
Q ss_pred eeeCCcc-hHHHHHHHHhHhcCCC--eEEEEccCCch-hHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCC
Q 018939 118 VPIGGNY-RLIDIPMSNCINSGFN--KIFIMTQFNSF-SLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQG 193 (348)
Q Consensus 118 lpIgGk~-pLId~~l~~l~~aGi~--~IvVvt~~~~~-~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~G 193 (348)
+|.-+.. ..+...++.+.+.-.. +|+|+-..... .+...+ +.+ ... ...+.++.... ..|
T Consensus 7 i~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~-~~~-~~~-----~~~~~~~~~~~---------~~g 70 (202)
T cd04184 7 MPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVL-KKY-AAQ-----DPRIKVVFREE---------NGG 70 (202)
T ss_pred EecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHH-HHH-Hhc-----CCCEEEEEccc---------CCC
Confidence 4545554 5677777777764332 56666443322 232222 222 000 11244443222 146
Q ss_pred cHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHH-HhcCCcE
Q 018939 194 TADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKH-IDTKADI 243 (348)
Q Consensus 194 ta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h-~~~~adi 243 (348)
-+.++-.++... ..+.++++..|..+..+ +..+++.+ ...+.++
T Consensus 71 ~~~a~n~g~~~a------~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~ 116 (202)
T cd04184 71 ISAATNSALELA------TGEFVALLDHDDELAPHALYEVVKALNEHPDADL 116 (202)
T ss_pred HHHHHHHHHHhh------cCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCE
Confidence 778877776554 36899999999988877 67777776 3344443
No 127
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=76.84 E-value=51 Score=28.84 Aligned_cols=106 Identities=7% Similarity=0.048 Sum_probs=60.0
Q ss_pred ceeeCCcchHHHHHHHHhHhcCC----CeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccC
Q 018939 117 AVPIGGNYRLIDIPMSNCINSGF----NKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQ 192 (348)
Q Consensus 117 llpIgGk~pLId~~l~~l~~aGi----~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~ 192 (348)
.+|.-+....|...++.+.+... -+|+|+-....+...+.+.... . .....+.++..... ...
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~--~----~~~~~v~~~~~~~~-------~~~ 68 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAA--A----KPNFQLKILNNSRV-------SIS 68 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHH--h----CCCcceEEeeccCc-------ccc
Confidence 35666664678888888877432 3566665543333333332011 0 01112555543321 114
Q ss_pred CcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCC
Q 018939 193 GTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKA 241 (348)
Q Consensus 193 Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~a 241 (348)
|-+.++..++... ..+.++++.+|.+...+ +..+++.+.+.+.
T Consensus 69 g~~~a~n~g~~~~------~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 112 (229)
T cd04192 69 GKKNALTTAIKAA------KGDWIVTTDADCVVPSNWLLTFVAFIQKEQI 112 (229)
T ss_pred hhHHHHHHHHHHh------cCCEEEEECCCcccCHHHHHHHHHHhhcCCC
Confidence 5666766665443 46999999999988877 6677776655443
No 128
>PRK11204 N-glycosyltransferase; Provisional
Probab=76.80 E-value=46 Score=33.04 Aligned_cols=96 Identities=15% Similarity=0.192 Sum_probs=56.4
Q ss_pred hHHHHHHHHhHhcCC--CeEEEEccCCchhHHHH---HHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcHHHHH
Q 018939 125 RLIDIPMSNCINSGF--NKIFIMTQFNSFSLNRH---LARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVR 199 (348)
Q Consensus 125 pLId~~l~~l~~aGi--~~IvVvt~~~~~~l~~h---l~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~ 199 (348)
..|...++.+.+... -+|+|+.....+...+. +.+.+ ..++++..... .|-++++.
T Consensus 67 ~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~----------~~v~~i~~~~n---------~Gka~aln 127 (420)
T PRK11204 67 ENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQI----------PRLRVIHLAEN---------QGKANALN 127 (420)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhC----------CcEEEEEcCCC---------CCHHHHHH
Confidence 456666777766432 36666655433332222 22222 12555542221 47788888
Q ss_pred HHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcEEEE
Q 018939 200 QFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVS 246 (348)
Q Consensus 200 ~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~aditi~ 246 (348)
.++... ..|.++++++|.+.+.| +..+++.+.+ +.++.++
T Consensus 128 ~g~~~a------~~d~i~~lDaD~~~~~d~L~~l~~~~~~-~~~v~~v 168 (420)
T PRK11204 128 TGAAAA------RSEYLVCIDGDALLDPDAAAYMVEHFLH-NPRVGAV 168 (420)
T ss_pred HHHHHc------CCCEEEEECCCCCCChhHHHHHHHHHHh-CCCeEEE
Confidence 887654 46999999999988877 6777776654 3334333
No 129
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=76.39 E-value=40 Score=28.73 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=34.8
Q ss_pred CCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcEEEE
Q 018939 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVS 246 (348)
Q Consensus 192 ~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~aditi~ 246 (348)
.|.+.|+..++... ..+.++++.+|..+..+ +..+++. .+.+.++.+.
T Consensus 66 ~G~~~a~n~g~~~a------~~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v~g 114 (181)
T cd04187 66 FGQQAALLAGLDHA------RGDAVITMDADLQDPPELIPEMLAK-WEEGYDVVYG 114 (181)
T ss_pred CCcHHHHHHHHHhc------CCCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEEEE
Confidence 57888888887654 35999999999988766 6677766 4456665443
No 130
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=75.31 E-value=53 Score=28.30 Aligned_cols=99 Identities=11% Similarity=0.128 Sum_probs=57.9
Q ss_pred ceeeCCcc--hHHHHHHHHhHhcCC--CeEEEEccCC-chhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCcccc
Q 018939 117 AVPIGGNY--RLIDIPMSNCINSGF--NKIFIMTQFN-SFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWF 191 (348)
Q Consensus 117 llpIgGk~--pLId~~l~~l~~aGi--~~IvVvt~~~-~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~ 191 (348)
++|+-+.. ..|...++.+.+... .+++|+-... .....+.+ +.| .. ...+.++.....
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~-~~~-~~------~~~i~~i~~~~n--------- 65 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVL-EEF-KR------KLPLKVVPLEKN--------- 65 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHH-HHH-Hh------cCCeEEEEcCcc---------
Confidence 35665542 378888888888542 4566654433 22232222 333 10 001455543222
Q ss_pred CCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHh
Q 018939 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHID 238 (348)
Q Consensus 192 ~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~ 238 (348)
.|.+.+.-.++... ..+.++++.+|.+...+ +..+++...+
T Consensus 66 ~G~~~a~N~g~~~a------~gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 66 RGLGKALNEGLKHC------TYDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred ccHHHHHHHHHHhc------CCCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 57888887777543 46999999999988776 6677776543
No 131
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=73.47 E-value=51 Score=33.34 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=59.4
Q ss_pred ceeeCCcchHHHHHHHHhHhcCC--CeEEEEccCCchhHHHHH---HHhccCCCCcccCCCcEEEEecccCCCcCCcccc
Q 018939 117 AVPIGGNYRLIDIPMSNCINSGF--NKIFIMTQFNSFSLNRHL---ARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWF 191 (348)
Q Consensus 117 llpIgGk~pLId~~l~~l~~aGi--~~IvVvt~~~~~~l~~hl---~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~ 191 (348)
++|.-+....|...++.+.+..- -+|+|+.....+...+.+ .+.+ ..++++.....
T Consensus 80 iIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~----------~~v~vv~~~~n--------- 140 (444)
T PRK14583 80 LVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAED----------PRLRVIHLAHN--------- 140 (444)
T ss_pred EEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhC----------CCEEEEEeCCC---------
Confidence 34444443456677777766432 366666544333322322 2222 12555543222
Q ss_pred CCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcEEEE
Q 018939 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVS 246 (348)
Q Consensus 192 ~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~aditi~ 246 (348)
.|-+.|+..++... ..|.++++.+|.+.+.| +..+++.+.+ +.++.++
T Consensus 141 ~Gka~AlN~gl~~a------~~d~iv~lDAD~~~~~d~L~~lv~~~~~-~~~~g~v 189 (444)
T PRK14583 141 QGKAIALRMGAAAA------RSEYLVCIDGDALLDKNAVPYLVAPLIA-NPRTGAV 189 (444)
T ss_pred CCHHHHHHHHHHhC------CCCEEEEECCCCCcCHHHHHHHHHHHHh-CCCeEEE
Confidence 47788888776543 46999999999999887 5677766654 3344333
No 132
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=72.56 E-value=79 Score=29.02 Aligned_cols=100 Identities=16% Similarity=0.223 Sum_probs=60.6
Q ss_pred hHHHHHHHHhHh-cCCC-eEEEEccCC----chhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcHHHH
Q 018939 125 RLIDIPMSNCIN-SGFN-KIFIMTQFN----SFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAV 198 (348)
Q Consensus 125 pLId~~l~~l~~-aGi~-~IvVvt~~~----~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al 198 (348)
|++-|.+..... .|.+ +|+|+ ... ..++.+.|.+.| |...|.+..-... +|-+.|.
T Consensus 19 pi~~~li~~~~~e~~~~~eiIiv-DD~SpDGt~~~a~~L~k~y--------g~d~i~l~pR~~k---------lGLgtAy 80 (238)
T KOG2978|consen 19 PIITRLIAKYMSEEGKKYEIIIV-DDASPDGTQEVAKALQKIY--------GEDNILLKPRTKK---------LGLGTAY 80 (238)
T ss_pred eeeHHHHHhhhhhhcCceEEEEE-eCCCCCccHHHHHHHHHHh--------CCCcEEEEeccCc---------ccchHHH
Confidence 455555555544 5665 44444 332 234556665555 3334555432221 5777778
Q ss_pred HHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcEEEEEE
Q 018939 199 RQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVSCV 248 (348)
Q Consensus 199 ~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~aditi~~~ 248 (348)
..++.+. ..+.++++.+|.-.+.. +.+|++...+.+-|++..+-
T Consensus 81 ~hgl~~a------~g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GTR 125 (238)
T KOG2978|consen 81 IHGLKHA------TGDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTR 125 (238)
T ss_pred Hhhhhhc------cCCeEEEEeCccCCCchhHHHHHHHhhccCcceeeeee
Confidence 7777555 35888899999866554 67888887777778766543
No 133
>PRK10018 putative glycosyl transferase; Provisional
Probab=72.42 E-value=87 Score=29.78 Aligned_cols=98 Identities=11% Similarity=0.204 Sum_probs=57.4
Q ss_pred eeeCCcchHHHHHHHHhHhcCCC--eEEEEccCCc-hhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCc
Q 018939 118 VPIGGNYRLIDIPMSNCINSGFN--KIFIMTQFNS-FSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGT 194 (348)
Q Consensus 118 lpIgGk~pLId~~l~~l~~aGi~--~IvVvt~~~~-~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gt 194 (348)
+|.-+....|...++.+.+.... +|+|+-.... .++.+.+.+.+ +...+.++...+. .|.
T Consensus 11 ip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~--------~~~ri~~i~~~~n---------~G~ 73 (279)
T PRK10018 11 MPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTAL--------NDPRITYIHNDIN---------SGA 73 (279)
T ss_pred EEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHc--------CCCCEEEEECCCC---------CCH
Confidence 34445445677888888775443 4555533222 12333332322 1223666653322 577
Q ss_pred HHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHh
Q 018939 195 ADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHID 238 (348)
Q Consensus 195 a~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~ 238 (348)
+.|.-.++... ..+.++++.+|..+..+ +..+++...+
T Consensus 74 ~~a~N~gi~~a------~g~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 74 CAVRNQAIMLA------QGEYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred HHHHHHHHHHc------CCCEEEEECCCCCCCccHHHHHHHHHHh
Confidence 88877776554 46999999999988776 6677765443
No 134
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=70.74 E-value=70 Score=27.67 Aligned_cols=100 Identities=12% Similarity=0.089 Sum_probs=58.0
Q ss_pred eeeCCcchHHHHHHHHhHhcCC--CeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcH
Q 018939 118 VPIGGNYRLIDIPMSNCINSGF--NKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTA 195 (348)
Q Consensus 118 lpIgGk~pLId~~l~~l~~aGi--~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta 195 (348)
+|.-++...|...++.+.+... .+|+|+-+...+.....+. .+ .. .. .+.++..... .|.+
T Consensus 3 I~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~-~~--~~--~~---~i~~~~~~~n---------~g~~ 65 (202)
T cd04185 3 VVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLT-SL--GD--LD---NIVYLRLPEN---------LGGA 65 (202)
T ss_pred EEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHH-Hh--cC--CC---ceEEEECccc---------cchh
Confidence 3444544678888888887532 3676665544444444442 22 11 11 1445443222 4667
Q ss_pred HHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHH
Q 018939 196 DAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHI 237 (348)
Q Consensus 196 ~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~ 237 (348)
.++-.++..... ...+.++++..|.+++.+ +..+++...
T Consensus 66 ~~~n~~~~~a~~---~~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 66 GGFYEGVRRAYE---LGYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred hHHHHHHHHHhc---cCCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 777666655421 246899999999998877 556666554
No 135
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=69.49 E-value=69 Score=27.09 Aligned_cols=101 Identities=9% Similarity=0.122 Sum_probs=58.5
Q ss_pred eeeCCcchHHHHHHHHhHhcCCC--eEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcH
Q 018939 118 VPIGGNYRLIDIPMSNCINSGFN--KIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTA 195 (348)
Q Consensus 118 lpIgGk~pLId~~l~~l~~aGi~--~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta 195 (348)
+|.-+....|...+..+.+.... +|+|+-........+.+. .+ .. ..+.+.. .. ..|-+
T Consensus 4 i~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~-~~--~~------~~~~~~~-~~---------~~g~~ 64 (202)
T cd06433 4 TPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIK-KY--ED------KITYWIS-EP---------DKGIY 64 (202)
T ss_pred EeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHH-Hh--Hh------hcEEEEe-cC---------CcCHH
Confidence 45555546888888888876544 566664433333334442 22 11 0123322 11 14778
Q ss_pred HHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHh-cCCcE
Q 018939 196 DAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHID-TKADI 243 (348)
Q Consensus 196 ~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~-~~adi 243 (348)
.++..++... ..++++++.+|..+..+ +..++..+.. .+.++
T Consensus 65 ~a~n~~~~~a------~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~ 108 (202)
T cd06433 65 DAMNKGIALA------TGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDV 108 (202)
T ss_pred HHHHHHHHHc------CCCEEEEeCCCcccCchHHHHHHHHHHhCCCccE
Confidence 8888887654 36899999999977665 6777744443 34444
No 136
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=69.44 E-value=73 Score=27.35 Aligned_cols=109 Identities=13% Similarity=0.154 Sum_probs=61.8
Q ss_pred ceeeCCcchHHHHHHHHhHhcCC----CeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccC
Q 018939 117 AVPIGGNYRLIDIPMSNCINSGF----NKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQ 192 (348)
Q Consensus 117 llpIgGk~pLId~~l~~l~~aGi----~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~ 192 (348)
++|.-+....|.-.++.+.+... -+|+|+.....+...+.+ +.+ +. .+.+.. ... ..
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~-~~~--------~~-~~~~~~-~~~--------~~ 62 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVA-RAA--------GA-TVLERH-DPE--------RR 62 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHH-HHc--------CC-eEEEeC-CCC--------CC
Confidence 45666654677888888877432 356666554443333333 333 11 122211 111 14
Q ss_pred CcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcEEEE
Q 018939 193 GTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVS 246 (348)
Q Consensus 193 Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~aditi~ 246 (348)
|-+.++..++..... .....+.++++.+|.....+ +..++..+. .+.++...
T Consensus 63 gk~~aln~g~~~a~~-~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~-~~~~~v~g 115 (183)
T cd06438 63 GKGYALDFGFRHLLN-LADDPDAVVVFDADNLVDPNALEELNARFA-AGARVVQA 115 (183)
T ss_pred CHHHHHHHHHHHHHh-cCCCCCEEEEEcCCCCCChhHHHHHHHHHh-hCCCeeEE
Confidence 778888887766531 01246899999999999887 566666654 45555333
No 137
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=68.93 E-value=25 Score=31.10 Aligned_cols=107 Identities=17% Similarity=0.219 Sum_probs=54.1
Q ss_pred ceeeCCcchHHHHHHHHhHhcC--CCeEEEEccCCchh---HHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCcccc
Q 018939 117 AVPIGGNYRLIDIPMSNCINSG--FNKIFIMTQFNSFS---LNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWF 191 (348)
Q Consensus 117 llpIgGk~pLId~~l~~l~~aG--i~~IvVvt~~~~~~---l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~ 191 (348)
++|.-+..+.|...+..+.+.. --+|+|+.....+. ..+.+...+ ....+.++......+ .
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~--------~~~~v~vi~~~~~~g------~ 71 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARY--------PRVRVRVIRRPRNPG------P 71 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTT--------GG-GEEEEE----HH------H
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHc--------CCCceEEeecCCCCC------c
Confidence 4566665467778888887642 24566666444332 233443333 111356665432210 1
Q ss_pred CCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcE
Q 018939 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADI 243 (348)
Q Consensus 192 ~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~adi 243 (348)
.|.+.++..++...+ .+.++++..|.+.+.+ +..+++.+...+..+
T Consensus 72 ~~k~~a~n~~~~~~~------~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~ 118 (228)
T PF13641_consen 72 GGKARALNEALAAAR------GDYILFLDDDTVLDPDWLERLLAAFADPGVGA 118 (228)
T ss_dssp HHHHHHHHHHHHH---------SEEEEE-SSEEE-CHHHHHHHHHHHBSS--E
T ss_pred chHHHHHHHHHHhcC------CCEEEEECCCcEECHHHHHHHHHHHHhCCCCe
Confidence 235667777766553 6899999999988877 567777773444433
No 138
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=67.72 E-value=90 Score=30.70 Aligned_cols=101 Identities=11% Similarity=0.152 Sum_probs=54.6
Q ss_pred ceeeCCcchHHHHHHHHhHhcCC--CeEEEEccCCch---hHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCcccc
Q 018939 117 AVPIGGNYRLIDIPMSNCINSGF--NKIFIMTQFNSF---SLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWF 191 (348)
Q Consensus 117 llpIgGk~pLId~~l~~l~~aGi--~~IvVvt~~~~~---~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~ 191 (348)
++|.-|..+.|...++.+.+..- -+|+|+.....+ ++.+.+.+.+ ....++++......| .
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~--------p~~~i~~v~~~~~~G------~ 111 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADF--------PDADIDLVIDARRHG------P 111 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhC--------CCCceEEEECCCCCC------C
Confidence 44555554677777877777543 356555443322 3333343333 111255554333221 1
Q ss_pred CCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHH
Q 018939 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHI 237 (348)
Q Consensus 192 ~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~ 237 (348)
.+-..++..++ +.+ ..|.++++.+|.....| +..++..+.
T Consensus 112 ~~K~~~l~~~~---~~a---~ge~i~~~DaD~~~~p~~L~~lv~~~~ 152 (373)
T TIGR03472 112 NRKVSNLINML---PHA---RHDILVIADSDISVGPDYLRQVVAPLA 152 (373)
T ss_pred ChHHHHHHHHH---Hhc---cCCEEEEECCCCCcChhHHHHHHHHhc
Confidence 23334444443 322 46999999999988888 566766554
No 139
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=65.66 E-value=95 Score=27.29 Aligned_cols=107 Identities=12% Similarity=0.190 Sum_probs=60.3
Q ss_pred eeeCCcc-hHHHHHHHHhHhcCCC----eEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccC
Q 018939 118 VPIGGNY-RLIDIPMSNCINSGFN----KIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQ 192 (348)
Q Consensus 118 lpIgGk~-pLId~~l~~l~~aGi~----~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~ 192 (348)
+|.-+.. .++...++.+.+.... +|+|+-....+...+.+ +.+ ... . .+.++...... .
T Consensus 7 ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~-~~~--~~~--~---~~~~~~~~~~~--------~ 70 (234)
T cd06421 7 IPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALA-AEL--GVE--Y---GYRYLTRPDNR--------H 70 (234)
T ss_pred EecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHH-HHh--hcc--c---CceEEEeCCCC--------C
Confidence 4555542 3678888888875442 57777665554444433 333 110 0 13444322111 2
Q ss_pred CcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcEEEEE
Q 018939 193 GTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVSC 247 (348)
Q Consensus 193 Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~aditi~~ 247 (348)
+-++++..++... ..|.++++..|.+.+.+ +..++..+.+ +.++.+++
T Consensus 71 ~~~~~~n~~~~~a------~~d~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~~v~ 119 (234)
T cd06421 71 AKAGNLNNALAHT------TGDFVAILDADHVPTPDFLRRTLGYFLD-DPKVALVQ 119 (234)
T ss_pred CcHHHHHHHHHhC------CCCEEEEEccccCcCccHHHHHHHHHhc-CCCeEEEe
Confidence 3456666666543 46999999999988877 5667766543 34444443
No 140
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=64.55 E-value=1e+02 Score=27.33 Aligned_cols=99 Identities=10% Similarity=0.109 Sum_probs=57.6
Q ss_pred ceeeCCcc-hHHHHHHHHhHhcCC--CeEEEEccCCchh-HHH---HHHHhccCCCCcccCCCcEEEEecccCCCcCCcc
Q 018939 117 AVPIGGNY-RLIDIPMSNCINSGF--NKIFIMTQFNSFS-LNR---HLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKK 189 (348)
Q Consensus 117 llpIgGk~-pLId~~l~~l~~aGi--~~IvVvt~~~~~~-l~~---hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~ 189 (348)
.+|.-+.. .+|...++.+.+... -+|+|+-+...+. ... .+.+.+ . ..+.++.....
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~--~-------~~i~~i~~~~~------- 66 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQL--G-------ERFRFFHVEPL------- 66 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHh--C-------CcEEEEEcCCC-------
Confidence 35666654 378888888888643 3566665543322 212 222222 1 12444433322
Q ss_pred ccCC-cHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHH
Q 018939 190 WFQG-TADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHI 237 (348)
Q Consensus 190 ~~~G-ta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~ 237 (348)
.| .++|+-.++.... ...+.++++..|.+...+ +..++....
T Consensus 67 --~G~~~~a~n~g~~~a~----~~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 67 --PGAKAGALNYALERTA----PDAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred --CCCchHHHHHHHHhcC----CCCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 24 4777777766542 125899999999988877 677776654
No 141
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=61.95 E-value=1.1e+02 Score=26.64 Aligned_cols=100 Identities=12% Similarity=0.076 Sum_probs=50.6
Q ss_pred eeeCCcchHHHHHHHHhHhcC--CCeEEEEccCCchh---HHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccC
Q 018939 118 VPIGGNYRLIDIPMSNCINSG--FNKIFIMTQFNSFS---LNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQ 192 (348)
Q Consensus 118 lpIgGk~pLId~~l~~l~~aG--i~~IvVvt~~~~~~---l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~ 192 (348)
+|+-+..+-|...++.+.+.. --+|+||.....+. +.+.+...+ ....+.++......| ..
T Consensus 7 ip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~--------~~~~~~~~~~~~~~g------~~ 72 (196)
T cd02520 7 KPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKY--------PNVDARLLIGGEKVG------IN 72 (196)
T ss_pred EecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHC--------CCCcEEEEecCCcCC------CC
Confidence 455554345667777777642 23566665444332 222222222 111244444332211 01
Q ss_pred CcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHH
Q 018939 193 GTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHI 237 (348)
Q Consensus 193 Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~ 237 (348)
+.+.++..++... ..|.++++.+|...+.+ +..+++...
T Consensus 73 ~~~~~~n~g~~~a------~~d~i~~~D~D~~~~~~~l~~l~~~~~ 112 (196)
T cd02520 73 PKVNNLIKGYEEA------RYDILVISDSDISVPPDYLRRMVAPLM 112 (196)
T ss_pred HhHHHHHHHHHhC------CCCEEEEECCCceEChhHHHHHHHHhh
Confidence 2234444444332 46999999999988777 566776543
No 142
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=61.50 E-value=1.7e+02 Score=28.86 Aligned_cols=106 Identities=16% Similarity=0.246 Sum_probs=59.4
Q ss_pred hHHHHHHHHhHhcCC---CeEEEEccCCch---hHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcHHHH
Q 018939 125 RLIDIPMSNCINSGF---NKIFIMTQFNSF---SLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAV 198 (348)
Q Consensus 125 pLId~~l~~l~~aGi---~~IvVvt~~~~~---~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al 198 (348)
..|...++.+.+... -+|+|+-....+ ++.+.+.+.+. ....++++.....+ .| ..|-+.|+
T Consensus 53 ~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~-------~~~~i~vi~~~~~~--~g---~~Gk~~A~ 120 (384)
T TIGR03469 53 DVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYG-------RGDRLTVVSGQPLP--PG---WSGKLWAV 120 (384)
T ss_pred hHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcC-------CCCcEEEecCCCCC--CC---CcchHHHH
Confidence 566677777776532 366666554433 33333332220 01125666432211 11 23566677
Q ss_pred HHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcE
Q 018939 199 RQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADI 243 (348)
Q Consensus 199 ~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~adi 243 (348)
.+++....+. ....|.++++++|...+.+ +..+++...+.+.++
T Consensus 121 n~g~~~A~~~-~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 121 SQGIAAARTL-APPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred HHHHHHHhcc-CCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 7776554311 0116899999999988777 688888777666554
No 143
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=61.30 E-value=1.1e+02 Score=26.62 Aligned_cols=95 Identities=11% Similarity=-0.008 Sum_probs=54.3
Q ss_pred ceeeCCcchHHHHHHHHhHhcC--CCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCc
Q 018939 117 AVPIGGNYRLIDIPMSNCINSG--FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGT 194 (348)
Q Consensus 117 llpIgGk~pLId~~l~~l~~aG--i~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gt 194 (348)
.+|.-+..+.|...++.+.+.- ..+|+|+-+...+...+.+.+ . .+.++... .|-
T Consensus 4 ii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~-~-----------~~~~~~~~-----------~g~ 60 (221)
T cd02522 4 IIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS-A-----------GVVVISSP-----------KGR 60 (221)
T ss_pred EEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc-C-----------CeEEEeCC-----------cCH
Confidence 3566665457788888877743 245666644433333333321 1 13444321 355
Q ss_pred HHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcC
Q 018939 195 ADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTK 240 (348)
Q Consensus 195 a~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~ 240 (348)
+.+.-.++... ..+.+++++.|..+..+ +..++..+...+
T Consensus 61 ~~a~n~g~~~a------~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 61 ARQMNAGAAAA------RGDWLLFLHADTRLPPDWDAAIIETLRADG 101 (221)
T ss_pred HHHHHHHHHhc------cCCEEEEEcCCCCCChhHHHHHHHHhhcCC
Confidence 66666665443 36999999999988766 556555554444
No 144
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=60.42 E-value=2e+02 Score=29.13 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=32.0
Q ss_pred CCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHh
Q 018939 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHID 238 (348)
Q Consensus 192 ~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~ 238 (348)
.|-+.|+-.++... ..+.++++.+|.+.+.| +..+++.+.+
T Consensus 117 ~Gka~AlN~gl~~s------~g~~v~~~DaD~~~~~d~L~~l~~~f~~ 158 (439)
T TIGR03111 117 QGKAKALNAAIYNS------IGKYIIHIDSDGKLHKDAIKNMVTRFEN 158 (439)
T ss_pred CCHHHHHHHHHHHc------cCCEEEEECCCCCcChHHHHHHHHHHHh
Confidence 47788888887654 46899999999998877 6777777653
No 145
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=58.48 E-value=1.5e+02 Score=27.34 Aligned_cols=97 Identities=12% Similarity=0.030 Sum_probs=57.8
Q ss_pred HHHHHHHHhHhcCCCeEEEEccCCc--hhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcHHHHHHHHH
Q 018939 126 LIDIPMSNCINSGFNKIFIMTQFNS--FSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIW 203 (348)
Q Consensus 126 LId~~l~~l~~aGi~~IvVvt~~~~--~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~ 203 (348)
.+...++.+.+. ..+|+||=+-.. ..+.+.+. .+ ..+.++.... ..|-+.|.-.++.
T Consensus 9 ~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~-~~----------~~i~~i~~~~---------N~G~a~a~N~Gi~ 67 (281)
T TIGR01556 9 HLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARL-RG----------QKIALIHLGD---------NQGIAGAQNQGLD 67 (281)
T ss_pred HHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhc-cC----------CCeEEEECCC---------CcchHHHHHHHHH
Confidence 556666666654 456766655422 22322221 11 2366765332 2588999988887
Q ss_pred HHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcEEEE
Q 018939 204 VFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVS 246 (348)
Q Consensus 204 ~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~aditi~ 246 (348)
...+ .+.+.+++++.|.....+ +..+++...+.+.++.++
T Consensus 68 ~a~~---~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~ 108 (281)
T TIGR01556 68 ASFR---RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACAL 108 (281)
T ss_pred HHHH---CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEE
Confidence 6532 356999999999988766 566776655443244443
No 146
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=58.46 E-value=1.2e+02 Score=26.07 Aligned_cols=100 Identities=8% Similarity=0.155 Sum_probs=55.5
Q ss_pred ceeeCCcchHHHHHHHHhHhcCC--CeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCc
Q 018939 117 AVPIGGNYRLIDIPMSNCINSGF--NKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGT 194 (348)
Q Consensus 117 llpIgGk~pLId~~l~~l~~aGi--~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gt 194 (348)
.+|.-+....|...++.+.+... -+|+|+-.-..+...+.+ +.+.-.. . ..+.++..... .|.
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~-~~~~~~~----~-~~~~~~~~~~~---------~G~ 67 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEII-KEYIDKD----P-FIIILIRNGKN---------LGV 67 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHH-HHHHhcC----C-ceEEEEeCCCC---------ccH
Confidence 35666654578888888877533 255555443333222222 2220000 0 11333332221 477
Q ss_pred HHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHH
Q 018939 195 ADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHI 237 (348)
Q Consensus 195 a~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~ 237 (348)
+.++..++... ..+.++++..|..+..+ +..+++...
T Consensus 68 ~~~~n~g~~~~------~g~~v~~ld~Dd~~~~~~l~~~~~~~~ 105 (214)
T cd04196 68 ARNFESLLQAA------DGDYVFFCDQDDIWLPDKLERLLKAFL 105 (214)
T ss_pred HHHHHHHHHhC------CCCEEEEECCCcccChhHHHHHHHHHh
Confidence 77777765332 46999999999988776 677777633
No 147
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=56.84 E-value=1.5e+02 Score=33.06 Aligned_cols=105 Identities=14% Similarity=0.191 Sum_probs=60.0
Q ss_pred eeeCCcc-hHHHHHHHHhHhcC--CC--eEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccC
Q 018939 118 VPIGGNY-RLIDIPMSNCINSG--FN--KIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQ 192 (348)
Q Consensus 118 lpIgGk~-pLId~~l~~l~~aG--i~--~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~ 192 (348)
+|.-+.. .++...+..+.+.. -+ +|+|+-.-..+... .+.++. + ++++...... .
T Consensus 266 IPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~-~la~~~--------~---v~yI~R~~n~--------~ 325 (852)
T PRK11498 266 VPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFR-QFAQEV--------G---VKYIARPTHE--------H 325 (852)
T ss_pred EecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHH-HHHHHC--------C---cEEEEeCCCC--------c
Confidence 3444442 25666676666533 22 56666554444443 333333 1 4554322111 3
Q ss_pred CcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcEEEEEEe
Q 018939 193 GTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVSCVP 249 (348)
Q Consensus 193 Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~aditi~~~~ 249 (348)
|-++++-.++... ..|.++++++|++...| ++.++..+.+ +.++.++..|
T Consensus 326 gKAGnLN~aL~~a------~GEyIavlDAD~ip~pdfL~~~V~~f~~-dP~VglVQtp 376 (852)
T PRK11498 326 AKAGNINNALKYA------KGEFVAIFDCDHVPTRSFLQMTMGWFLK-DKKLAMMQTP 376 (852)
T ss_pred chHHHHHHHHHhC------CCCEEEEECCCCCCChHHHHHHHHHHHh-CCCeEEEEcc
Confidence 5688888887654 46999999999998877 4666665544 4455555544
No 148
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=55.32 E-value=2.1e+02 Score=27.86 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=35.0
Q ss_pred CCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHH---hcCCcEEEEE
Q 018939 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHI---DTKADITVSC 247 (348)
Q Consensus 192 ~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~---~~~aditi~~ 247 (348)
.|-+.|+..++... ..+.++++.+|.-++.+ +..+++... +.+.++.+..
T Consensus 148 ~G~~~A~~~Gi~~a------~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~Gs 201 (333)
T PTZ00260 148 KGKGGAVRIGMLAS------RGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGS 201 (333)
T ss_pred CChHHHHHHHHHHc------cCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEee
Confidence 58899999887643 35899999999977754 566666544 3556655543
No 149
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=55.26 E-value=1.6e+02 Score=26.47 Aligned_cols=92 Identities=15% Similarity=0.153 Sum_probs=55.3
Q ss_pred ceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcHH
Q 018939 117 AVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTAD 196 (348)
Q Consensus 117 llpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta~ 196 (348)
++|.-+....|...++.+... ..+|+|+-+...+... .+.+.+ + +.++.. . ..|-+.
T Consensus 5 ii~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~-~i~~~~--------~---~~v~~~-~---------~~g~~~ 61 (229)
T cd02511 5 VIITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTV-EIAKEY--------G---AKVYQR-W---------WDGFGA 61 (229)
T ss_pred EEEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHH-HHHHHc--------C---CEEEEC-C---------CCChHH
Confidence 345555446777777777654 3678877665444333 333443 1 344432 1 247777
Q ss_pred HHHHHHHHHHhhccCCCceEEEEcCCcccccCHH-HHHHHHH
Q 018939 197 AVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYT-EFLQKHI 237 (348)
Q Consensus 197 Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~-~ll~~h~ 237 (348)
+.-.++... ..+.++++.+|.++..++. .+++...
T Consensus 62 ~~n~~~~~a------~~d~vl~lDaD~~~~~~~~~~l~~~~~ 97 (229)
T cd02511 62 QRNFALELA------TNDWVLSLDADERLTPELADEILALLA 97 (229)
T ss_pred HHHHHHHhC------CCCEEEEEeCCcCcCHHHHHHHHHHHh
Confidence 777776554 3579999999998887754 4444433
No 150
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=51.33 E-value=1.8e+02 Score=28.57 Aligned_cols=105 Identities=13% Similarity=0.168 Sum_probs=67.0
Q ss_pred ceeeCCcch-HHHHHHHHhHhcCCC--eEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCC
Q 018939 117 AVPIGGNYR-LIDIPMSNCINSGFN--KIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQG 193 (348)
Q Consensus 117 llpIgGk~p-LId~~l~~l~~aGi~--~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~G 193 (348)
++|.-|..+ .++..++.+.+.... +|+++.....+...+.+.+... .++ ..+.++.... ...|
T Consensus 59 iiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~-----~~~-~~~~~~~~~~--------~~~g 124 (439)
T COG1215 59 IIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGA-----EYG-PNFRVIYPEK--------KNGG 124 (439)
T ss_pred EEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHh-----hcC-cceEEEeccc--------cCcc
Confidence 445555556 899999999987643 6777776555555555543320 111 1133331101 1257
Q ss_pred cHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCC
Q 018939 194 TADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKA 241 (348)
Q Consensus 194 ta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~a 241 (348)
-+.++..++... ..|.++++.+|.+...| +.+++..+.+...
T Consensus 125 K~~al~~~l~~~------~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~ 167 (439)
T COG1215 125 KAGALNNGLKRA------KGDVVVILDADTVPEPDALRELVSPFEDPPV 167 (439)
T ss_pred chHHHHHHHhhc------CCCEEEEEcCCCCCChhHHHHHHhhhcCCCe
Confidence 789998887654 36999999999998887 6788887765543
No 151
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=49.04 E-value=2.4e+02 Score=27.12 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=36.2
Q ss_pred CCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-cccC-HHHHHHHHH-hcCCcEEEEEE
Q 018939 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-YRMD-YTEFLQKHI-DTKADITVSCV 248 (348)
Q Consensus 192 ~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~~~d-~~~ll~~h~-~~~aditi~~~ 248 (348)
.|-+.|+..++... ..+.++++.+|.. ++.+ +..+++... +.+.++...++
T Consensus 101 ~Gkg~A~~~g~~~a------~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~~ 154 (306)
T PRK13915 101 PGKGEALWRSLAAT------TGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAFY 154 (306)
T ss_pred CCHHHHHHHHHHhc------CCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEEe
Confidence 57888888776543 4699999999996 6665 678887765 34566655543
No 152
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=48.02 E-value=1.9e+02 Score=25.68 Aligned_cols=95 Identities=17% Similarity=0.238 Sum_probs=50.8
Q ss_pred eeeCCcchHHHHHHHHhHhcCC----CeEEEEccCCchh---HHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccc
Q 018939 118 VPIGGNYRLIDIPMSNCINSGF----NKIFIMTQFNSFS---LNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKW 190 (348)
Q Consensus 118 lpIgGk~pLId~~l~~l~~aGi----~~IvVvt~~~~~~---l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~ 190 (348)
+|.-+....|...|+.+.+... -+|+|+-+ ..+. +.+.+...+ ...+. .+.++.....
T Consensus 7 Ip~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~-~~~~~-----~i~~~~~~~~-------- 71 (232)
T cd06437 7 LPVFNEKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEY-AAQGV-----NIKHVRRADR-------- 71 (232)
T ss_pred EecCCcHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHH-hhcCC-----ceEEEECCCC--------
Confidence 4555544688888888877432 14555543 3322 222222222 01111 1333332221
Q ss_pred cCC-cHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHH
Q 018939 191 FQG-TADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQ 234 (348)
Q Consensus 191 ~~G-ta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~ 234 (348)
.| .+.++-.++... ..+.++++.+|.+...+ +..+..
T Consensus 72 -~G~k~~a~n~g~~~a------~~~~i~~~DaD~~~~~~~l~~~~~ 110 (232)
T cd06437 72 -TGYKAGALAEGMKVA------KGEYVAIFDADFVPPPDFLQKTPP 110 (232)
T ss_pred -CCCchHHHHHHHHhC------CCCEEEEEcCCCCCChHHHHHhhh
Confidence 24 466777776544 46999999999988877 455443
No 153
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=44.90 E-value=2.8e+02 Score=26.84 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=35.2
Q ss_pred CCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcEE
Q 018939 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADIT 244 (348)
Q Consensus 192 ~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~adit 244 (348)
.|-+.|+..++... ..+.++++.+|.-.+.+ +..+++... .+.|+.
T Consensus 76 ~G~~~A~~~G~~~A------~gd~vv~~DaD~q~~p~~i~~l~~~~~-~~~DvV 122 (325)
T PRK10714 76 YGQHSAIMAGFSHV------TGDLIITLDADLQNPPEEIPRLVAKAD-EGYDVV 122 (325)
T ss_pred CCHHHHHHHHHHhC------CCCEEEEECCCCCCCHHHHHHHHHHHH-hhCCEE
Confidence 57888998887554 36899999999988764 778888764 467754
No 154
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=40.88 E-value=2e+02 Score=26.83 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=50.0
Q ss_pred HHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHH
Q 018939 126 LIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVF 205 (348)
Q Consensus 126 LId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i 205 (348)
-..=.++.|...|+++|.|+|-|. +++++.+.+.|. ..| ++|+....-...+..+.-.=+-++++.+...+
T Consensus 107 ~~~A~~~AL~alg~~RIalvTPY~-~~v~~~~~~~l~-~~G-------~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~ 177 (239)
T TIGR02990 107 PSSAAVDGLAALGVRRISLLTPYT-PETSRPMAQYFA-VRG-------FEIVNFTCLGLTDDREMARISPDCIVEAALAA 177 (239)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCc-HHHHHHHHHHHH-hCC-------cEEeeeeccCCCCCceeeecCHHHHHHHHHHh
Confidence 344556788888999999999986 456777765441 112 34433211110011111112445555554433
Q ss_pred HhhccCCCceEEEEcCCcccccCHHHHHH
Q 018939 206 EDAKNKNVENVLILSGDHLYRMDYTEFLQ 234 (348)
Q Consensus 206 ~~~~~~~~e~vLIl~gD~l~~~d~~~ll~ 234 (348)
. ..+-+-++++|-.+-..++-+-++
T Consensus 178 ~----~~~aDAifisCTnLrt~~vi~~lE 202 (239)
T TIGR02990 178 F----DPDADALFLSCTALRAATCAQRIE 202 (239)
T ss_pred c----CCCCCEEEEeCCCchhHHHHHHHH
Confidence 2 134466666677665555444443
No 155
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=40.16 E-value=4e+02 Score=28.94 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=34.8
Q ss_pred CcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcEEEEEEe
Q 018939 193 GTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVSCVP 249 (348)
Q Consensus 193 Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~aditi~~~~ 249 (348)
+-++++..++... ..|.++++.+|++...| +..++..+.+ +.++.++..+
T Consensus 215 ~KAgnLN~al~~a------~gd~Il~lDAD~v~~pd~L~~~v~~f~~-dp~v~~Vqtp 265 (713)
T TIGR03030 215 AKAGNINNALKHT------DGELILIFDADHVPTRDFLQRTVGWFVE-DPKLFLVQTP 265 (713)
T ss_pred CChHHHHHHHHhc------CCCEEEEECCCCCcChhHHHHHHHHHHh-CCCEEEEeCC
Confidence 4578888877554 46999999999998888 5677766543 4445454433
No 156
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=39.65 E-value=2.3e+02 Score=23.73 Aligned_cols=99 Identities=9% Similarity=0.108 Sum_probs=53.4
Q ss_pred eeeCCcchHHHHHHHHhHhcC--CCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcH
Q 018939 118 VPIGGNYRLIDIPMSNCINSG--FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTA 195 (348)
Q Consensus 118 lpIgGk~pLId~~l~~l~~aG--i~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta 195 (348)
+|.-+....+...++.+.+.. ..+|+|+-........+.+. .+ .. ......+.+..... ..|.+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~-~~-~~---~~~~~~~~~~~~~~---------~~~~~ 68 (182)
T cd06420 3 ITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIE-EF-KS---QFPIPIKHVWQEDE---------GFRKA 68 (182)
T ss_pred EeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHH-HH-Hh---hcCCceEEEEcCCc---------chhHH
Confidence 566665457888888888742 34666665544433333332 22 00 00111122222111 02455
Q ss_pred HHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHH
Q 018939 196 DAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKH 236 (348)
Q Consensus 196 ~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h 236 (348)
.+...++... ..+.++++.+|.+...+ +..+++.+
T Consensus 69 ~~~n~g~~~a------~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 69 KIRNKAIAAA------KGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHHHh------cCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 6666665543 46999999999988776 56666654
No 157
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=39.44 E-value=50 Score=27.17 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=19.8
Q ss_pred CcchHHHHHHHHhHhcCCCeEEEEc
Q 018939 122 GNYRLIDIPMSNCINSGFNKIFIMT 146 (348)
Q Consensus 122 Gk~pLId~~l~~l~~aGi~~IvVvt 146 (348)
+. |-|+-.++.|.+.|+++|+|+-
T Consensus 44 ~~-P~l~~~l~~l~~~g~~~v~vvP 67 (126)
T PRK00923 44 NE-PTIPEALKKLIGTGADKIIVVP 67 (126)
T ss_pred CC-CCHHHHHHHHHHcCCCEEEEEc
Confidence 44 8899999999999998888764
No 158
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=38.92 E-value=3.4e+02 Score=25.64 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=59.6
Q ss_pred eCCcchHHHHHHHHhHhcCCCeE--EEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcHHH
Q 018939 120 IGGNYRLIDIPMSNCINSGFNKI--FIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADA 197 (348)
Q Consensus 120 IgGk~pLId~~l~~l~~aGi~~I--vVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta~A 197 (348)
.... ..+...+..+.++..... +++.+.......+.+.... + ..|.++..... .|=|++
T Consensus 12 yn~~-~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~-------~--~~v~~i~~~~N---------lG~agg 72 (305)
T COG1216 12 YNRG-EDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF-------F--PNVRLIENGEN---------LGFAGG 72 (305)
T ss_pred cCCH-HHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc-------C--CcEEEEEcCCC---------ccchhh
Confidence 3444 566677777777654333 3334443333444443221 0 12666654332 566666
Q ss_pred HHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcEEE
Q 018939 198 VRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITV 245 (348)
Q Consensus 198 l~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~aditi 245 (348)
.-.+.....+ ...+++++++-|.+.+.+ +.++++.+.+.+..+.+
T Consensus 73 ~n~g~~~a~~---~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~ 118 (305)
T COG1216 73 FNRGIKYALA---KGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVV 118 (305)
T ss_pred hhHHHHHHhc---CCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEe
Confidence 6655554431 122379999999888777 78999988877654433
No 159
>PRK10063 putative glycosyl transferase; Provisional
Probab=35.92 E-value=3.5e+02 Score=24.89 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=52.0
Q ss_pred hHHHHHHHHhHhc----CC-CeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcHHHHH
Q 018939 125 RLIDIPMSNCINS----GF-NKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVR 199 (348)
Q Consensus 125 pLId~~l~~l~~a----Gi-~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~ 199 (348)
..|...++.+.+. +. -+|+|+-+...+...+.+ +.| .+ ...+.++.. . ..|-++|+-
T Consensus 14 ~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~-~~~--~~-----~~~i~~i~~--~--------~~G~~~A~N 75 (248)
T PRK10063 14 EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFL-ENL--NG-----IFNLRFVSE--P--------DNGIYDAMN 75 (248)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHH-HHh--cc-----cCCEEEEEC--C--------CCCHHHHHH
Confidence 5677777777531 22 255666443333333333 343 11 012555532 1 158889988
Q ss_pred HHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcC
Q 018939 200 QFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTK 240 (348)
Q Consensus 200 ~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~ 240 (348)
.++... ..+.++++++|-++..+..+++......+
T Consensus 76 ~Gi~~a------~g~~v~~ld~DD~~~~~~~~~~~~~~~~~ 110 (248)
T PRK10063 76 KGIAMA------QGRFALFLNSGDIFHQDAANFVRQLKMQK 110 (248)
T ss_pred HHHHHc------CCCEEEEEeCCcccCcCHHHHHHHHHhCC
Confidence 887655 35999999988877767555555554343
No 160
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=35.89 E-value=3e+02 Score=24.13 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=50.7
Q ss_pred hHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHH
Q 018939 125 RLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWV 204 (348)
Q Consensus 125 pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~ 204 (348)
..|...++.+.+. ..+|+|+-+. +.+-.....+. ....+.++..... .|-+.|.-.++..
T Consensus 11 ~~l~~~l~sl~~q-~~~iivvDn~-s~~~~~~~~~~---------~~~~i~~i~~~~n---------~G~~~a~N~g~~~ 70 (237)
T cd02526 11 SKLKELLAALAEQ-VDKVVVVDNS-SGNDIELRLRL---------NSEKIELIHLGEN---------LGIAKALNIGIKA 70 (237)
T ss_pred HHHHHHHHHHhcc-CCEEEEEeCC-CCccHHHHhhc---------cCCcEEEEECCCc---------eehHHhhhHHHHH
Confidence 5677777777776 5566666443 32222222111 1123566653332 5777787777665
Q ss_pred HHhhccCCCceEEEEcCCcccccC-HHHHH
Q 018939 205 FEDAKNKNVENVLILSGDHLYRMD-YTEFL 233 (348)
Q Consensus 205 i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll 233 (348)
.. ..+.++++++.+|...+.+ +..++
T Consensus 71 a~---~~~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 71 AL---ENGADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred HH---hCCCCEEEEECCCCCcCHhHHHHHH
Confidence 43 2246999999999988876 55654
No 161
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=25.99 E-value=1.6e+02 Score=23.68 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=19.2
Q ss_pred CcchHHHHHHHHhHhcCCCeEEEEc
Q 018939 122 GNYRLIDIPMSNCINSGFNKIFIMT 146 (348)
Q Consensus 122 Gk~pLId~~l~~l~~aGi~~IvVvt 146 (348)
+. |-|+-.++.|...|+++|+++-
T Consensus 40 ~~-P~i~~~l~~l~~~G~~~i~lvP 63 (103)
T cd03413 40 GY-PGLDDVLAKLKKAGIKKVTLMP 63 (103)
T ss_pred CC-CCHHHHHHHHHHcCCCEEEEEe
Confidence 55 8888888888888888887764
No 162
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=25.68 E-value=2.1e+02 Score=23.79 Aligned_cols=35 Identities=14% Similarity=0.452 Sum_probs=28.4
Q ss_pred CCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEe
Q 018939 211 KNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVP 249 (348)
Q Consensus 211 ~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~ 249 (348)
...+.+++++||. ||..+++..++.|..+.+++.+
T Consensus 98 ~~~d~ivLvSgD~----Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 98 RRIDTIVLVSGDS----DFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred cCCCEEEEEECCc----cHHHHHHHHHHcCCEEEEEccC
Confidence 3568999999986 8888888888888887776665
No 163
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=25.63 E-value=12 Score=35.67 Aligned_cols=64 Identities=13% Similarity=0.118 Sum_probs=40.1
Q ss_pred EEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEecCCC-----CCCcceEEEECCCCcEEEEEeCCCCCC
Q 018939 216 VLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPMDDC-----RASDYGLMKIDRSGQIIQFAEKPKGPD 280 (348)
Q Consensus 216 vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~~~~-----~~~~~g~v~id~~g~V~~~~EKp~~~~ 280 (348)
...-+||++...+...+++.|.+.|.... .+..+++. .+.-+|++..++.+.+..+.+|+..+.
T Consensus 110 ~P~GnGdi~~~L~~sglLd~l~~~G~~yi-~v~~vDN~la~v~DP~~lG~~~~~~~~~~~kvv~K~~~d~ 178 (266)
T cd04180 110 FPCGHGDVVLALIHSGHLNKLLEKGYRYI-HFIGVDNLLVKVADPLFIGIAIQNRKAINQKVVPKTRNEE 178 (266)
T ss_pred ccCCcHHHHHHHHHCChHHHHHHcCCEEE-EEEccCccCccccCHHHHHHHHHcCCCEEEEEEECCCCCC
Confidence 33344555444444568999999887632 22222221 145578777777789999999997653
No 164
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=25.35 E-value=4.4e+02 Score=22.68 Aligned_cols=105 Identities=10% Similarity=0.060 Sum_probs=57.1
Q ss_pred eeeCCcchHHHHHHHHhHhcC-CCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcHH
Q 018939 118 VPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTAD 196 (348)
Q Consensus 118 lpIgGk~pLId~~l~~l~~aG-i~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta~ 196 (348)
+|.-+....|...++.+.+.. --+|+|+-....+...+.+ +.. . ....+.++...... ...|-+.
T Consensus 3 Ip~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~-~~~-~------~~~~v~~i~~~~~~------~~~Gk~~ 68 (191)
T cd06436 3 VPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIV-RLA-I------TDSRVHLLRRHLPN------ARTGKGD 68 (191)
T ss_pred EeccccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHH-hhe-e------cCCcEEEEeccCCc------CCCCHHH
Confidence 555555468888888888754 2245666544443333333 211 0 01125555321110 1247888
Q ss_pred HHHHHHHHHHhhc---c--CCCceEEEEcCCcccccC-HHHHHHHH
Q 018939 197 AVRQFIWVFEDAK---N--KNVENVLILSGDHLYRMD-YTEFLQKH 236 (348)
Q Consensus 197 Al~~~l~~i~~~~---~--~~~e~vLIl~gD~l~~~d-~~~ll~~h 236 (348)
|+..++..+.... + ...+.++++.+|..++.+ +..+...+
T Consensus 69 aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~ 114 (191)
T cd06436 69 ALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYF 114 (191)
T ss_pred HHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhh
Confidence 9888887653100 0 013689999999998887 45544433
No 165
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=23.35 E-value=2.5e+02 Score=24.69 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=20.0
Q ss_pred CCceeEeEEEEEeHHHHHHHHHhh
Q 018939 301 FPYIASMGVYLFRTDVLLNLLRSS 324 (348)
Q Consensus 301 ~~~~a~~GiYif~~~vl~~ll~~~ 324 (348)
.|.+++.+.|+++.+++..++...
T Consensus 144 yP~y~~G~~yvls~~~v~~i~~~~ 167 (195)
T PF01762_consen 144 YPPYCSGGGYVLSSDVVKRIYKAS 167 (195)
T ss_pred CCCcCCCCeEEecHHHHHHHHHHh
Confidence 356678999999999999988764
No 166
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=23.31 E-value=1.3e+02 Score=29.73 Aligned_cols=67 Identities=19% Similarity=0.254 Sum_probs=41.9
Q ss_pred CCCCeeEEEEeCCCCccCCCCC----------CCCCc-----cceeeCCcchHHHHHHHHhHhcCCCeEEEEccCC----
Q 018939 89 DPKNVAAIILGGGAGTRLFPLT----------NRRAK-----PAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFN---- 149 (348)
Q Consensus 89 ~~~~~~aIILAgG~GtRl~pLT----------~~~PK-----pllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~---- 149 (348)
+++.+.+|||.| .|||...-. ..++. +++.+ .. |-|.-.++.|.+.|.++|+|+--+-
T Consensus 2 ~~~~~~aiLLvg-HGSRdp~~~~~~~~La~~l~~~~~~~V~~aFLE~-~e-Psl~eal~~l~~~G~~~IvVvPlFL~~G~ 78 (335)
T PRK05782 2 DRQSNTAIILIG-HGSRRETFNSDMEGMANYLKEKLGVPIYLTYNEF-AE-PNWRSLLNEIIKEGYRRVIIALAFLGRGN 78 (335)
T ss_pred CCCCCceEEEEe-cCCCChHHHHHHHHHHHHHHhccCCceEEEEecc-CC-CCHHHHHHHHHHCCCCEEEEecccccCCc
Confidence 456678888888 899852110 01111 12222 33 8899999999999999988875432
Q ss_pred --chhHHHHHH
Q 018939 150 --SFSLNRHLA 158 (348)
Q Consensus 150 --~~~l~~hl~ 158 (348)
.++|-+.|.
T Consensus 79 Hv~~DIP~~L~ 89 (335)
T PRK05782 79 HVFRDIMGELG 89 (335)
T ss_pred chhhhHHHHHH
Confidence 235555554
No 167
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=22.57 E-value=1.8e+02 Score=23.69 Aligned_cols=32 Identities=19% Similarity=0.426 Sum_probs=21.1
Q ss_pred CceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEE
Q 018939 213 VENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCV 248 (348)
Q Consensus 213 ~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~ 248 (348)
.+.+++++|| .||..+++..++.|..+.+++.
T Consensus 96 ~d~ivLvSgD----~Df~~~v~~l~~~g~~V~v~~~ 127 (146)
T PF01936_consen 96 PDTIVLVSGD----SDFAPLVRKLRERGKRVIVVGA 127 (146)
T ss_dssp -SEEEEE-------GGGHHHHHHHHHH--EEEEEE-
T ss_pred CCEEEEEECc----HHHHHHHHHHHHcCCEEEEEEe
Confidence 4899999999 6788888888888887777774
No 168
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=21.93 E-value=9.2e+02 Score=25.16 Aligned_cols=100 Identities=12% Similarity=0.111 Sum_probs=53.6
Q ss_pred CCcchHHHHHHHHhH-hcCCC--eEEEEccCCchh---HHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCc
Q 018939 121 GGNYRLIDIPMSNCI-NSGFN--KIFIMTQFNSFS---LNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGT 194 (348)
Q Consensus 121 gGk~pLId~~l~~l~-~aGi~--~IvVvt~~~~~~---l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gt 194 (348)
-+....|...++++. +..-. +|+|+...+..+ ..+.+.+.| . .++++.. ...+ +.|-
T Consensus 75 ~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~---p-------~v~~vv~-~~~g------p~~K 137 (504)
T PRK14716 75 WREADVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARY---P-------RVHLVIV-PHDG------PTSK 137 (504)
T ss_pred cCchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHC---C-------CeEEEEe-CCCC------CCCH
Confidence 333357777777643 33322 577776444333 334444444 1 1333321 1111 2356
Q ss_pred HHHHHHHHHHHHh---hccCCCceEEEEcCCcccccCHHHHHHHHH
Q 018939 195 ADAVRQFIWVFED---AKNKNVENVLILSGDHLYRMDYTEFLQKHI 237 (348)
Q Consensus 195 a~Al~~~l~~i~~---~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~ 237 (348)
++++-.++..+.. .++..-|.++++.+|.+.+.+.-..+..+.
T Consensus 138 a~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~ 183 (504)
T PRK14716 138 ADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLL 183 (504)
T ss_pred HHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhc
Confidence 7888777665521 111123899999999999888655555443
Done!