Query 018939
Match_columns 348
No_of_seqs 193 out of 2182
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 08:24:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yp2_A Glucose-1-phosphate ade 100.0 1.3E-34 4.4E-39 289.4 18.7 252 89-347 17-271 (451)
2 3juk_A UDP-glucose pyrophospho 100.0 4.7E-32 1.6E-36 254.8 19.7 221 91-347 1-245 (281)
3 3brk_X Glucose-1-phosphate ade 100.0 4.7E-31 1.6E-35 261.7 22.7 236 91-347 11-249 (420)
4 4ecm_A Glucose-1-phosphate thy 100.0 2.4E-29 8.4E-34 235.4 22.2 209 91-347 23-234 (269)
5 3st8_A Bifunctional protein GL 100.0 2.3E-29 8E-34 255.2 19.9 212 90-342 10-226 (501)
6 2e3d_A UTP--glucose-1-phosphat 100.0 2E-28 6.7E-33 232.6 22.0 216 92-347 8-256 (302)
7 1tzf_A Glucose-1-phosphate cyt 100.0 6.1E-29 2.1E-33 229.7 17.9 220 91-347 1-225 (259)
8 4evw_A Nucleoside-diphosphate- 100.0 1.3E-28 4.5E-33 229.6 16.3 207 95-347 2-221 (255)
9 2ux8_A Glucose-1-phosphate uri 100.0 1.7E-28 5.8E-33 232.6 16.9 219 91-347 13-254 (297)
10 3pnn_A Conserved domain protei 100.0 3.5E-28 1.2E-32 232.0 18.5 232 89-347 2-266 (303)
11 1fxo_A Glucose-1-phosphate thy 100.0 1.5E-27 5.1E-32 226.8 21.1 208 91-345 1-212 (293)
12 1lvw_A Glucose-1-phosphate thy 100.0 5.1E-27 1.7E-31 223.6 22.9 205 92-344 3-212 (295)
13 2pa4_A UTP-glucose-1-phosphate 100.0 3E-27 1E-31 227.2 18.9 219 92-347 12-257 (323)
14 1mc3_A Glucose-1-phosphate thy 99.9 3.2E-27 1.1E-31 225.1 17.3 205 93-345 4-213 (296)
15 2qh5_A PMI, ALGA, mannose-6-ph 99.9 8.3E-27 2.8E-31 222.7 17.8 195 91-324 3-205 (308)
16 2x65_A Mannose-1-phosphate gua 99.9 1E-25 3.5E-30 218.3 11.9 191 93-324 2-207 (336)
17 1hm9_A GLMU, UDP-N-acetylgluco 99.9 4.3E-24 1.5E-28 213.5 20.9 206 93-347 12-223 (468)
18 1jyk_A LICC protein, CTP:phosp 99.9 1.6E-24 5.5E-29 201.5 13.4 197 91-347 24-226 (254)
19 2cu2_A Putative mannose-1-phos 99.9 3.7E-24 1.3E-28 207.4 14.7 193 91-326 1-206 (337)
20 3oam_A 3-deoxy-manno-octuloson 99.9 7.9E-23 2.7E-27 189.8 19.2 190 91-323 1-198 (252)
21 4fce_A Bifunctional protein GL 99.9 6.6E-23 2.3E-27 204.1 18.3 204 91-346 7-216 (459)
22 2v0h_A Bifunctional protein GL 99.9 3.7E-22 1.3E-26 198.5 17.7 200 91-342 4-208 (456)
23 2ggo_A 401AA long hypothetical 99.9 8.3E-22 2.8E-26 193.2 16.5 186 93-339 1-191 (401)
24 3k8d_A 3-deoxy-manno-octuloson 99.9 2.4E-20 8.1E-25 175.0 19.6 193 89-322 15-213 (264)
25 3tqd_A 3-deoxy-manno-octuloson 99.8 1.7E-19 5.8E-24 168.5 21.5 193 91-323 8-207 (256)
26 2y6p_A 3-deoxy-manno-octuloson 99.8 3.7E-19 1.3E-23 161.6 19.3 179 91-322 1-182 (234)
27 1h7e_A 3-deoxy-manno-octuloson 99.8 1E-18 3.6E-23 159.8 19.2 181 91-321 1-187 (245)
28 2xme_A CTP-inositol-1-phosphat 99.8 9.2E-20 3.1E-24 166.1 12.0 172 90-323 16-188 (232)
29 1vic_A 3-deoxy-manno-octuloson 99.8 6.7E-18 2.3E-22 156.8 20.8 193 91-321 1-200 (262)
30 2icy_A Probable UTP-glucose-1- 99.8 2.5E-17 8.5E-22 165.9 19.6 206 91-323 78-310 (469)
31 1ezi_A CMP-N-acetylneuraminic 99.8 1.1E-17 3.7E-22 151.8 14.8 183 91-320 3-189 (228)
32 3f1c_A Putative 2-C-methyl-D-e 99.8 1.7E-17 5.7E-22 153.1 16.1 180 90-323 1-184 (246)
33 2i5k_A UTP--glucose-1-phosphat 99.7 2.3E-17 7.8E-22 166.9 17.3 204 90-323 90-323 (488)
34 4fcu_A 3-deoxy-manno-octuloson 99.7 1.6E-16 5.6E-21 148.0 21.1 189 93-322 2-198 (253)
35 1jv1_A Glcnac1P uridyltransfer 99.7 1E-16 3.5E-21 162.8 19.7 210 91-323 101-344 (505)
36 2vsh_A TARI, 2-C-methyl-D-eryt 99.7 3.7E-16 1.3E-20 141.5 18.2 176 93-323 3-185 (236)
37 2dpw_A Hypothetical protein TT 99.7 8.1E-18 2.8E-22 153.8 6.0 159 91-322 1-161 (232)
38 2yc3_A 2-C-methyl-D-erythritol 99.7 9.8E-17 3.3E-21 145.1 12.6 171 91-322 3-176 (228)
39 1vgw_A 4-diphosphocytidyl-2C-m 99.7 1.4E-15 4.7E-20 137.7 19.1 175 91-323 5-183 (231)
40 2xwl_A 2-C-methyl-D-erythritol 99.7 5.3E-16 1.8E-20 139.5 14.6 170 91-323 1-173 (223)
41 1qwj_A Cytidine monophospho-N- 99.7 2.3E-15 8E-20 137.0 16.0 131 91-251 2-135 (229)
42 3rsb_A Adenosylcobinamide-phos 99.7 1.1E-16 3.7E-21 141.7 6.9 131 93-252 1-138 (196)
43 2waw_A MOBA relate protein; un 99.6 2.8E-15 9.4E-20 132.1 11.2 124 91-246 4-129 (199)
44 1i52_A 4-diphosphocytidyl-2-C- 99.6 2.7E-14 9.4E-19 129.9 17.4 131 90-251 5-138 (236)
45 2wee_A MOBA-related protein; u 99.6 3.4E-15 1.1E-19 131.5 10.6 123 91-245 4-128 (197)
46 2oeg_A UTP-glucose-1-phosphate 99.6 3.5E-14 1.2E-18 143.8 19.2 213 92-323 75-323 (505)
47 3oc9_A UDP-N-acetylglucosamine 99.6 2.9E-14 1E-18 140.6 18.2 208 91-321 34-275 (405)
48 3q80_A 2-C-methyl-D-erythritol 99.6 9.9E-14 3.4E-18 127.4 17.2 171 92-324 7-181 (231)
49 2yqc_A UDP-N-acetylglucosamine 99.6 5.7E-14 2E-18 142.0 16.3 210 91-323 102-352 (486)
50 1vpa_A 2-C-methyl-D-erythritol 99.5 1.3E-12 4.3E-17 118.4 19.1 169 92-323 13-184 (234)
51 3d5n_A Q97W15_sulso; NESG, SSR 99.5 3.6E-14 1.2E-18 126.4 8.6 120 91-247 1-122 (197)
52 2px7_A 2-C-methyl-D-erythritol 99.5 1.3E-12 4.5E-17 119.4 17.8 135 91-274 24-160 (236)
53 1e5k_A Molybdopterin-guanine d 99.5 2.4E-13 8.3E-18 121.6 11.9 119 90-245 4-124 (201)
54 2e8b_A Probable molybdopterin- 99.4 8.9E-13 3E-17 117.7 7.5 105 91-233 13-120 (201)
55 3ngw_A Molybdopterin-guanine d 99.3 6.7E-12 2.3E-16 113.3 12.9 117 93-247 1-119 (208)
56 1w55_A ISPD/ISPF bifunctional 99.3 1.3E-11 4.4E-16 120.9 9.9 125 90-252 1-128 (371)
57 3r3i_A UTP--glucose-1-phosphat 98.6 4.4E-07 1.5E-11 91.8 15.0 216 88-324 123-366 (528)
58 3gue_A UTP-glucose-1-phosphate 98.5 3E-06 1E-10 85.1 17.3 214 91-323 75-319 (484)
59 3ogz_A UDP-sugar pyrophosphory 98.4 1.6E-05 5.4E-10 81.9 19.9 221 92-323 114-375 (630)
60 2i5e_A Hypothetical protein MM 97.0 0.0026 8.8E-08 56.3 9.5 105 91-234 2-111 (211)
61 2iu8_A LPXD, UDP-3-O-[3-hydrox 96.5 0.00051 1.8E-08 66.6 0.6 75 214-318 11-89 (374)
62 1qg8_A Protein (spore coat pol 91.2 7 0.00024 33.9 17.8 111 118-243 7-121 (255)
63 3bcv_A Putative glycosyltransf 90.3 4.5 0.00015 34.8 12.7 102 119-246 12-119 (240)
64 3cgx_A Putative nucleotide-dip 81.5 12 0.00042 33.4 11.0 90 125-237 38-129 (242)
65 1xhb_A Polypeptide N-acetylgal 77.6 45 0.0015 32.0 14.5 98 125-243 43-146 (472)
66 2ffu_A Ppgalnact-2, polypeptid 71.5 40 0.0014 32.8 12.4 92 126-243 81-178 (501)
67 2z86_A Chondroitin synthase; G 69.6 43 0.0015 33.5 12.4 105 117-243 98-206 (625)
68 2d7i_A Polypeptide N-acetylgal 62.1 86 0.0029 31.3 12.9 101 118-240 118-225 (570)
69 3ckj_A Putative uncharacterize 58.7 84 0.0029 28.7 11.3 51 192-248 117-170 (329)
70 2z86_A Chondroitin synthase; G 57.3 83 0.0028 31.3 11.8 99 118-239 381-482 (625)
71 3f1y_A Mannosyl-3-phosphoglyce 47.5 98 0.0033 29.4 10.0 52 192-249 165-219 (387)
72 4fix_A UDP-galactofuranosyl tr 43.4 1.6E+02 0.0056 30.0 11.5 100 121-242 189-299 (657)
73 4hg6_A Cellulose synthase subu 30.0 2.8E+02 0.0095 28.9 10.9 41 192-238 224-265 (802)
74 2xvy_A Chelatase, putative; me 25.4 77 0.0026 28.2 4.9 26 122-148 63-88 (269)
No 1
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=100.00 E-value=1.3e-34 Score=289.39 Aligned_cols=252 Identities=60% Similarity=1.059 Sum_probs=189.9
Q ss_pred CCCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcc
Q 018939 89 DPKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVN 168 (348)
Q Consensus 89 ~~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~ 168 (348)
+|++|++||||||.||||+|||..+||||+||+|+||||+|++++|.++|+++|+|++++..+++.+|+.+.| +.+..
T Consensus 17 ~~~~~~avILAaG~gtRl~plT~~~pK~llpi~g~~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~--~~~~~ 94 (451)
T 1yp2_A 17 ASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAY--ASNMG 94 (451)
T ss_dssp HHHHEEEEEC------CCTTTTTTSCGGGCEETTTEETTHHHHHHHHHTTCCEEEEEESCCCHHHHHHHHHHC--C----
T ss_pred cccceEEEEECCCCCCcccchhcCCcceeeEECCcceeHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHhhhh--hcccc
Confidence 4567999999999999999999999999999999878999999999999999999999999999999997655 11110
Q ss_pred -c-CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEE
Q 018939 169 -F-GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVS 246 (348)
Q Consensus 169 -~-~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~ 246 (348)
+ ..+.++++...|.+ ..++|..||+++++.++.++.+ ...++|+|++||++++.++.++++.|.+.++++|++
T Consensus 95 ~~~~~~~v~i~~~~~~~--~~~~~~~Gt~~al~~a~~~~~~---~~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~ 169 (451)
T 1yp2_A 95 GYKNEGFVEVLAAQQSP--ENPDWFQGTADAVRQYLWLFEE---HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVA 169 (451)
T ss_dssp ----CCEEEEEESCSST--TSCCCCCSHHHHHHHTHHHHTT---SCCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEE
T ss_pred cccccCcEEEecccccc--cccccccCcHHHHHHHHHHHHh---cCCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEE
Confidence 1 12336666544432 2346778999999999988842 135899999999999999999999999999999999
Q ss_pred EEecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCC
Q 018939 247 CVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP 326 (348)
Q Consensus 247 ~~~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~ 326 (348)
+.+...+..++||++.+|++|+|..|.|||..+..+.++++..+++..+.......+++++|+|+|++++|..+++...+
T Consensus 170 ~~~~~~~~~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~ 249 (451)
T 1yp2_A 170 ALPMDEKRATAFGLMKIDEEGRIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFP 249 (451)
T ss_dssp EEEECHHHHTTSEEEEECTTSBEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCT
T ss_pred EEEcChhhcccCCEEEECCCCCEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhcc
Confidence 88875323578999999999999999999975433334444444443221111135789999999999999877776556
Q ss_pred CCcchhhhhHHhcccc-CCeee
Q 018939 327 LSNDFGSEIIPASVKD-HNVQV 347 (348)
Q Consensus 327 ~~~d~~~diip~l~~~-~~v~~ 347 (348)
...+|.+++++.++++ .++++
T Consensus 250 ~~~~~~~~~l~~~i~~g~~v~~ 271 (451)
T 1yp2_A 250 GANDFGSEVIPGATSLGMRVQA 271 (451)
T ss_dssp TCCCTTTTHHHHHHHTTCCEEE
T ss_pred cccchHhhHHHHHHhcCCceEE
Confidence 6678888999998886 66654
No 2
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=100.00 E-value=4.7e-32 Score=254.82 Aligned_cols=221 Identities=19% Similarity=0.259 Sum_probs=170.1
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc-
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF- 169 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~- 169 (348)
|.|++||||||.||||+|+|..+||||+||+|+ |||+|+++++.++|+++|+|+++++.+++.+|+.+.|.+.....-
T Consensus 1 M~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~ 79 (281)
T 3juk_A 1 MIKKCLFPAAGYGTRFLPITKTIPKEMLPIVDK-PLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGT 79 (281)
T ss_dssp CCCEEEEECCSCCGGGTTGGGTSCGGGCBSSSS-BHHHHHHHHHHHHTCCEEEEEECTTHHHHHHHTSCCC--------C
T ss_pred CceEEEEECCcCCcccCccccCCCcccceECCE-EHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHhcchhhhhhhhcc
Confidence 458999999999999999999999999999999 999999999999999999999999998888887543322111000
Q ss_pred CC-----------CcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-----HHHHH
Q 018939 170 GD-----------GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-----YTEFL 233 (348)
Q Consensus 170 ~~-----------~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-----~~~ll 233 (348)
+. ..+.+....+. ++.||+++++.++.++. .++|+|++||++++.+ +.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~-------~~~Gt~~al~~a~~~l~------~~~~lv~~~D~~~~~~~~~~~l~~l~ 146 (281)
T 3juk_A 80 NKENALKSIRNIIEKCCFSYVRQK-------QMKGLGHAILTGEALIG------NEPFAVILADDLCISHDHPSVLKQMT 146 (281)
T ss_dssp CHHHHHHHHHHHHHHCEEEEEECS-------SCCCHHHHHHHTHHHHC------SSCEEEECTTEEEECTTSCCHHHHHH
T ss_pred cchhhhhhhhccccCccEEEEecC-------CCCCcHHHHHHHHHHcC------CCCEEEEeCCeeccCccchHHHHHHH
Confidence 00 01222222222 34799999999998883 4799999999999988 99999
Q ss_pred HHHHhcCCcEEEEEEecCCCCCCcceEEEECC--CC--cEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEE
Q 018939 234 QKHIDTKADITVSCVPMDDCRASDYGLMKIDR--SG--QIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGV 309 (348)
Q Consensus 234 ~~h~~~~aditi~~~~~~~~~~~~~g~v~id~--~g--~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Gi 309 (348)
+.|.+.++ +++++.+++.+.++.||++++|+ +| +|..|.|||..... ..+++++|+
T Consensus 147 ~~~~~~~~-~~v~~~~~~~~~~~~~g~v~~~~~~~g~~~v~~~~Ekp~~~~~-------------------~~~~~~~Gi 206 (281)
T 3juk_A 147 SLYQKYQC-SIVAIEEVALEEVSKYGVIRGEWLEEGVYEIKDMVEKPNQEDA-------------------PSNLAVIGR 206 (281)
T ss_dssp HHHHHHCS-CEEEEEECCTTTGGGSEEEEEEEEETTEEEEEEEEESCCTTTC-------------------SCSEEEEEE
T ss_pred HHHHHcCC-CEEEEEEechhhcccCCEEEeccCCCCceEEeEEEECcCCCCC-------------------CcceeEEEE
Confidence 99988887 67777776544578899999986 78 99999999974321 147899999
Q ss_pred EEEeHHHHHHHHHhhCC---CCcchhhhhHHhccccCCeee
Q 018939 310 YLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 310 Yif~~~vl~~ll~~~~~---~~~d~~~diip~l~~~~~v~~ 347 (348)
|+|++++|.. ++...+ +...+ +|+++.++++.+|++
T Consensus 207 Yi~~~~~l~~-l~~~~~~~~~e~~l-~d~i~~l~~~~~v~~ 245 (281)
T 3juk_A 207 YILTPDIFEI-LSETKPGKNNEIQI-TDALRTQAKRKRIIA 245 (281)
T ss_dssp EEECTTHHHH-HHTCCCCGGGSCCH-HHHHHHHHHHSCCEE
T ss_pred EEECHHHHHH-HHhcCCCCCCceeH-HHHHHHHHhcCCEEE
Confidence 9999999864 554322 23444 899999988777764
No 3
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=99.97 E-value=4.7e-31 Score=261.66 Aligned_cols=236 Identities=39% Similarity=0.665 Sum_probs=177.2
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
++|.+||||||.||||+|||..+||+|+||+|+||||+|+++++.++|+++|+|++++..+++.+|+.+.|++.. .+.
T Consensus 11 ~~~~avILAaG~gtRl~plT~~~pK~llpi~gk~pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~~--~~~ 88 (420)
T 3brk_X 11 RDAMAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHSLIRHLQRGWDFFR--PER 88 (420)
T ss_dssp GGEEEEEEECCCCGGGGGGGSSSCGGGSEETTTEETHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHSCCCC--GGG
T ss_pred hceEEEEEcCCCCCccchhhcCCcccccccCCCCcHHHHHHHHHHhCCCCeEEEEeCCChHHHHHHHhhhhcccc--ccc
Confidence 368999999999999999999999999999999789999999999999999999999998899999875552211 001
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEec
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPM 250 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~ 250 (348)
...+.++...+.. ...+|+.||+++++.++.++.+. ..++|+|++||+++..++.++++.|.+.++++|+++.+.
T Consensus 89 ~~~v~i~~~~~~~--~~~~~~~Gt~~al~~a~~~l~~~---~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~ 163 (420)
T 3brk_X 89 NESFDILPASQRV--SETQWYEGTADAVYQNIDIIEPY---APEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEV 163 (420)
T ss_dssp TCEEEEECCC---------CCCCHHHHHHTTHHHHHHH---CCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEEE
T ss_pred cCCEEEeCccccc--cCCccccCCHHHHHHHHHHHHhc---CCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEeec
Confidence 1235555433320 01357789999999999888631 347999999999998999999999999999999998876
Q ss_pred CCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCC---C
Q 018939 251 DDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---L 327 (348)
Q Consensus 251 ~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~---~ 327 (348)
+.+.++.||++.+|++|+|..|.|||...... +. ....+++++|+|+|++++|..+++...+ .
T Consensus 164 ~~~~~~~~g~v~~d~~g~v~~~~ekp~~~~~~--~~------------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~ 229 (420)
T 3brk_X 164 PRMEATGFGVMHVNEKDEIIDFIEKPADPPGI--PG------------NEGFALASMGIYVFHTKFLMEAVRRDAADPTS 229 (420)
T ss_dssp ETTGGGGSEEEEECTTSBEEEEEESCSSCCCB--TT------------BTTEEEEEEEEEEEEHHHHHHHHTSSCCC---
T ss_pred CccccCcccEEEECCCCcEEEeEeCCCccccc--cc------------cccceEEeeeeEEEeHHHHHHHHHHhcccCCc
Confidence 43346789999999999999999998643210 00 0124789999999999998777754333 2
Q ss_pred CcchhhhhHHhccccCCeee
Q 018939 328 SNDFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 328 ~~d~~~diip~l~~~~~v~~ 347 (348)
..+|..|+++.+++++++++
T Consensus 230 ~~~~~~d~l~~li~~g~v~~ 249 (420)
T 3brk_X 230 SRDFGKDIIPYIVEHGKAVA 249 (420)
T ss_dssp -------CTTHHHHHSCEEE
T ss_pred cccchHHHHHHHhhhCcEEE
Confidence 34677899999888776664
No 4
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=99.97 E-value=2.4e-29 Score=235.42 Aligned_cols=209 Identities=23% Similarity=0.376 Sum_probs=165.9
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCc-hhHHHHHHHhccCCCCccc
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNS-FSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~-~~l~~hl~r~y~~~~g~~~ 169 (348)
+.|++||||||.|+||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++.. +++.+++. ++..|
T Consensus 23 ~~m~aiIlAaG~g~Rl~~lt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~~~~~~~------~~~~~ 95 (269)
T 4ecm_A 23 NAMKGIILAGGTGSRLYPITKVTNKHLLPVGRY-PMIYHAVYKLKQCDITDIMIITGKEHMGDVVSFLG------SGQEF 95 (269)
T ss_dssp -CEEEEEECCSCCGGGTTTTSSSCGGGSEETTE-EHHHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHT------TSGGG
T ss_pred cCcEEEEECCCCccccccccCCCCceecEECCE-EHHHHHHHHHHHCCCCEEEEECChhhHHHHHHHHh------hcccc
Confidence 458999999999999999999999999999999 99999999999999999999999764 56666664 22233
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEe
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVP 249 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~ 249 (348)
+.. +.+.. +. +..||+++++.++..+. .++|+|++||+++..++.++++.|.++++++++++.+
T Consensus 96 ~~~-i~~~~--~~-------~~~G~~~al~~a~~~~~------~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~ 159 (269)
T 4ecm_A 96 GVS-FTYRV--QD-------KAGGIAQALGLCEDFVG------NDRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQS 159 (269)
T ss_dssp TCE-EEEEE--CS-------SCCCHHHHHHTTHHHHT------TSEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEE
T ss_pred Cce-EEEee--CC-------ccCcHHHHHHHHHHhcC------CCcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEE
Confidence 321 33322 21 23799999999988773 5899999999999989999999999999999999998
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCC--C
Q 018939 250 MDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP--L 327 (348)
Q Consensus 250 ~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~--~ 327 (348)
.++ +..||++..|+ |+|..|.|||.... .+++++|+|+|++++|.. ++...+ .
T Consensus 160 ~~~--~~~~g~v~~d~-g~v~~~~ekp~~~~---------------------~~~~~~Giy~~~~~~l~~-l~~~~~~~~ 214 (269)
T 4ecm_A 160 VDD--PERFGVANIQN-RKIIEIEEKPKEPK---------------------SSYAVTGIYLYDSKVFSY-IKELKPSAR 214 (269)
T ss_dssp CSC--GGGSEEEEEET-TEEEEEEESCSSCS---------------------CSEEEEEEEEECTTHHHH-HTSCCBCTT
T ss_pred CCC--CCCceEEEEcC-CEEEEEEECCCCCC---------------------CcEEEEEEEEECHHHHHh-hhhcCCCCC
Confidence 875 67899999985 99999999985432 378999999999998854 443222 1
Q ss_pred CcchhhhhHHhccccCCeee
Q 018939 328 SNDFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 328 ~~d~~~diip~l~~~~~v~~ 347 (348)
..-...|+++.++.+.++.+
T Consensus 215 ge~~l~d~l~~l~~~g~v~~ 234 (269)
T 4ecm_A 215 GELEITDINNWYLKRGVLTY 234 (269)
T ss_dssp SCBCHHHHHHHHHHTTCEEE
T ss_pred CeeeHHHHHHHHHHcCCEEE
Confidence 12234789998887766653
No 5
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=99.96 E-value=2.3e-29 Score=255.24 Aligned_cols=212 Identities=19% Similarity=0.282 Sum_probs=167.6
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
|.++.+||||||.||||+|+| ||||+||+|+ |||+|++++|.++|+++|+|++++..+++.+|+.+..+ .+
T Consensus 10 ~~~~~vvILAaG~GtRm~~~~---pK~l~pv~gk-p~i~~~l~~~~~~g~~~i~vv~~~~~~~i~~~~~~~~~-----~~ 80 (501)
T 3st8_A 10 PGDTAVLVLAAGPGTRMRSDT---PKVLHTLAGR-SMLSHVLHAIAKLAPQRLIVVLGHDHQRIAPLVGELAD-----TL 80 (501)
T ss_dssp --CEEEEEEECSCCGGGCCSS---CGGGCEETTE-EHHHHHHHHHHHHCCSEEEEEECTTHHHHHHHHHHHHH-----HH
T ss_pred CCCceEEEECCcCcccCCCCC---CHHHeEECCh-hHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHHHH-----hc
Confidence 456889999999999999986 9999999999 99999999999999999999999999999999864220 11
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-cccc-CHHHHHHHHHhcCCcEEEEE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRM-DYTEFLQKHIDTKADITVSC 247 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~-d~~~ll~~h~~~~aditi~~ 247 (348)
+. .++++. | ++++|||+||+++++++.+ ...++++|++||. ++.. .+.++++.|+..++++|+++
T Consensus 81 ~~-~i~~~~--q-------~~~lGTa~Av~~a~~~l~~---~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~ 147 (501)
T 3st8_A 81 GR-TIDVAL--Q-------DRPLGTGHAVLCGLSALPD---DYAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLT 147 (501)
T ss_dssp TS-CCEEEE--C-------SSCCCHHHHHHHHHTTSCT---TCCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CC-cEEEEE--c-------CCCCCcHHHHHHHHHHhcc---ccccceeeecCcceeecHHHHHHHHHHHhhccccceEee
Confidence 21 144432 2 2358999999999988853 2357899999998 4444 48899999999999999999
Q ss_pred EecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCC-
Q 018939 248 VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP- 326 (348)
Q Consensus 248 ~~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~- 326 (348)
.++++ ++.||.+..|++|+|..|.||++.... +...+.+++|+|+|++++|..++.....
T Consensus 148 ~~~~d--p~~yG~i~~~~~g~v~~ivEk~~~~~~-----------------~~~i~~in~Giy~f~~~~l~~~l~~l~~~ 208 (501)
T 3st8_A 148 TTLDD--PFGYGRILRTQDHEVMAIVEQTDATPS-----------------QREIREVNAGVYAFDIAALRSALSRLSSN 208 (501)
T ss_dssp EECSC--CTTSCEEEECTTCCEEEEECGGGCCHH-----------------HHHCCEEEEEEEEEEHHHHHHHHTTCCCC
T ss_pred eccCC--chhccccccccceeEEeeccccCCChh-----------------hccceeeeceeeeecchhHHHhhhhhccc
Confidence 99987 788999999999999999999875421 1124679999999999999988764322
Q ss_pred --CCcchhhhhHHhcccc
Q 018939 327 --LSNDFGSEIIPASVKD 342 (348)
Q Consensus 327 --~~~d~~~diip~l~~~ 342 (348)
....+..|++..+..+
T Consensus 209 n~~~e~yltd~i~~~~~~ 226 (501)
T 3st8_A 209 NAQQELYLTDVIAILRSD 226 (501)
T ss_dssp STTCSCCTTHHHHHHHHT
T ss_pred ccccccchhhHHHHHHhc
Confidence 2344566777766554
No 6
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=99.96 E-value=2e-28 Score=232.56 Aligned_cols=216 Identities=22% Similarity=0.313 Sum_probs=163.8
Q ss_pred CeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCC------
Q 018939 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGN------ 165 (348)
Q Consensus 92 ~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~------ 165 (348)
.|++||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+.|.+.+
T Consensus 8 ~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~~ 86 (302)
T 2e3d_A 8 VKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRV 86 (302)
T ss_dssp CCEEEEECCSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGGGHHHHHHHSCCHHHHHHHC---
T ss_pred ccEEEEECCcCcccCCccccCCCceeeEECCe-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHhcchhhhhhhhhcc
Confidence 58999999999999999999999999999999 99999999999999999999999988888888853221000
Q ss_pred Cc----------ccCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCccccc--------
Q 018939 166 GV----------NFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRM-------- 227 (348)
Q Consensus 166 g~----------~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~-------- 227 (348)
+. .++ ..+.++. + .+..||+++++.++..+. .++|+|++||++++.
T Consensus 87 ~~~~l~~~~~~~~~~-~~i~~~~--~-------~~~~Gt~~al~~a~~~~~------~~~~lv~~~D~~~~~~~~~~~~~ 150 (302)
T 2e3d_A 87 KRQLLDEVQSICPPH-VTIMQVR--Q-------GLAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESDLSQD 150 (302)
T ss_dssp -CHHHHHHHHTSCTT-CEEEEEE--C-------SSCCCHHHHHHHTHHHHC------SSCEEEECTTEEECTTSSCTTTS
T ss_pred chhhhhhhhhccccC-cceEEee--C-------CccCCHHHHHHHHHHHcC------CCcEEEEcCCccccCccccchHH
Confidence 00 011 1133332 1 124799999999998873 479999999998872
Q ss_pred CHHHHHHHHHhcCCcEEEEEEecCCCCCCcceEEEEC----CCC---cEEEEEeCCCCCCCCCcccccccccCCCCCCCC
Q 018939 228 DYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKID----RSG---QIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVK 300 (348)
Q Consensus 228 d~~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~id----~~g---~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~ 300 (348)
++..+++.|.+.++ +++++.+..+ .+.||++.++ ++| +|..|.|||..+..
T Consensus 151 ~l~~l~~~~~~~~~-~~i~~~~~~~--~~~yg~v~~~~~~~~~g~~~~v~~~~ekp~~~~~------------------- 208 (302)
T 2e3d_A 151 NLAEMIRRFDETGH-SQIMVEPVAD--VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVA------------------- 208 (302)
T ss_dssp THHHHHHHHHHHCC-EEEEEEECSC--GGGSEEEECTTCCCCTTCEEEECEEEESCCTTTC-------------------
T ss_pred HHHHHHHHHHhcCC-cEEEEEEccC--CCCccEEEecccccCCCCceeEEEEEECCCCCcc-------------------
Confidence 79999999988777 7777777643 6789999874 567 99999999864321
Q ss_pred CCceeEeEEEEEeHHHHHHHHHhhCCC--CcchhhhhHHhccccCCeee
Q 018939 301 FPYIASMGVYLFRTDVLLNLLRSSYPL--SNDFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 301 ~~~~a~~GiYif~~~vl~~ll~~~~~~--~~d~~~diip~l~~~~~v~~ 347 (348)
..+++++|+|+|++++|.. ++...+. ..-...++++.++++.+|++
T Consensus 209 ~~~~~~~Giyi~~~~~l~~-l~~~~~~~~~~~~l~d~i~~l~~~~~v~~ 256 (302)
T 2e3d_A 209 PSNLAIVGRYVLSADIWPL-LAKTPPGAGDEIQLTDAIDMLIEKETVEA 256 (302)
T ss_dssp SCSEEEEEEEEECTTHHHH-HTCCCC----CCCHHHHHHHHHHHSCEEE
T ss_pred ccceEEEEEEEECHHHHHH-HHhhCCCCCCceehHHHHHHHHHhCCEEE
Confidence 1478999999999998854 4443332 12234788888877666654
No 7
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=99.96 E-value=6.1e-29 Score=229.70 Aligned_cols=220 Identities=21% Similarity=0.298 Sum_probs=154.7
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc-
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF- 169 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~- 169 (348)
|+|.+||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++..+.+.+|+.+.+..+.++.+
T Consensus 1 m~~~avIlAaG~gtRl~~lt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~~ 79 (259)
T 1tzf_A 1 MASKAVILAGGLGTRLSEETIVKPKPMVEIGGK-PILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFH 79 (259)
T ss_dssp CCCEEEEEECSCC--------CCCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTHHHHHHHHHTHHHHHSCEEEE
T ss_pred CCcEEEEECCCCcccCCCccCCCCccccEECCE-EHHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHhhccccccccccc
Confidence 358899999999999999999999999999999 899999999999999999999999988888888643200001111
Q ss_pred -CCCcEEEEecccCCCc---CCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEE
Q 018939 170 -GDGFVEVLAATQTPGE---AGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITV 245 (348)
Q Consensus 170 -~~~~v~vl~~~q~~~~---~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi 245 (348)
+.+.++++.....+.. ..+....||+++++.++..+. ..++|+|++||+++..++.++++.|.+.++++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~v~~~~~~~~~gt~~al~~a~~~~~-----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~ 154 (259)
T 1tzf_A 80 MAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYVK-----DDEAFLFTYGDGVADLDIKATIDFHKAHGKKATL 154 (259)
T ss_dssp GGGTEEEETTCCCCCCEEEEEECCSSCCHHHHHHHTGGGTT-----TSSCEEEEETTEEECCCHHHHHHHHHHHCCSEEE
T ss_pred ccccceeeeeccccccceeeeecccccCcHHHHHHHHHhcC-----CCCcEEEEECCEecccCHHHHHHHHHHhCCeEEE
Confidence 0011222211000000 000113799999999987663 3579999999999988999999999888888887
Q ss_pred EEEecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhC
Q 018939 246 SCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSY 325 (348)
Q Consensus 246 ~~~~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~ 325 (348)
.... + ++.||++.+| +|+|..|.|||..+ .+++++|+|+|++++|.. ++.
T Consensus 155 ~~~~--~--~~~~g~v~~~-~g~v~~~~ekp~~~----------------------~~~~~~Giy~~~~~~l~~-l~~-- 204 (259)
T 1tzf_A 155 TATF--P--PGRFGALDIQ-AGQVRSFQEKPKGD----------------------GAMINGGFFVLNPSVIDL-IDN-- 204 (259)
T ss_dssp EEEC--C--CCCSEEEEEE-TTEEEEEEESCSCC----------------------SCCEECCCEEECGGGGGG-CCS--
T ss_pred EEec--C--CCCccEEEEc-CCEEEEEEecCCCC----------------------CceEEEEEEEeCHHHHHh-hcc--
Confidence 5443 2 5679999998 79999999998642 257899999999998843 321
Q ss_pred CCCcchhhhhHHhccccCCeee
Q 018939 326 PLSNDFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 326 ~~~~d~~~diip~l~~~~~v~~ 347 (348)
...++..++++.++++.++++
T Consensus 205 -~~~~~~~~~i~~~~~~~~v~~ 225 (259)
T 1tzf_A 205 -DATTWEQEPLMTLAQQGELMA 225 (259)
T ss_dssp -TTCCTTTHHHHHHHHTTCEEE
T ss_pred -cccccHHHHHHHHHHcCCEEE
Confidence 223566788888887666654
No 8
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=99.96 E-value=1.3e-28 Score=229.65 Aligned_cols=207 Identities=13% Similarity=0.163 Sum_probs=151.0
Q ss_pred EEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHh-cCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCc
Q 018939 95 AIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCIN-SGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGF 173 (348)
Q Consensus 95 aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~-aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~ 173 (348)
+||||||.||||+|+|..+||||+||+|+ |||+|+++++.+ +|+++|+|++++..+ +.+++.+.+. .++...
T Consensus 2 ~iIlAaG~GtRl~plt~~~PK~llpv~gk-pli~~~l~~l~~~~gi~~iivv~~~~~~-~~~~~~~~~~-----~~~~~~ 74 (255)
T 4evw_A 2 IVIPMAGMSSRFFKAGYTQPKYMLEAHGQ-TLFEHSVNSFAAYFASTPFLFIVRNVYD-TAVFVREKAT-----QLGIKQ 74 (255)
T ss_dssp EEEECCSCCHHHHHTTCCSCGGGCEETTE-EHHHHHHGGGGGGTTTSCEEEEEESSTT-HHHHHHHHHH-----HHTCSS
T ss_pred EEEEcCCCCcccccCCCCCCccccEECCe-EHHHHHHHHHhccCCCceEEEEECchhh-hHHHHHHHHH-----HcCCCC
Confidence 79999999999999999999999999999 999999999999 799999999998875 5555543220 111111
Q ss_pred EEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCccc-ccCHHHHHHHHHhcCCcEEEEEEecCC
Q 018939 174 VEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLY-RMDYTEFLQKHIDTKADITVSCVPMDD 252 (348)
Q Consensus 174 v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~-~~d~~~ll~~h~~~~aditi~~~~~~~ 252 (348)
+.++.. | .+..||++|+++++..+.+.....+++|+|++||+++ +.++.++ ..++++++++.+.++
T Consensus 75 ~~~~~~-~-------~~~~Gt~~av~~a~~~l~~~~~~~~~~~lV~~gD~l~~~~~~~~~-----~~~~~~~i~~~~~~~ 141 (255)
T 4evw_A 75 FYIAEL-H-------TETRGQAETVTLGLEELAKQGVDYQGSITVFNIDTFRPNFVFPDI-----SQHSDGYLEVFQGGG 141 (255)
T ss_dssp EEEEEE-S-------SCCSSHHHHHHHHHHHHHHTTCCCCSCEEECCTTEECTTCCCCGG-----GGSSSEEEEEEECCS
T ss_pred ceEEEe-C-------CCCCCHHHHHHHHHHHHhhcccCCCCcEEEEeCCEEEecchhHHH-----hhcCCcEEEEEecCC
Confidence 222111 1 1247999999999998831101135789999999988 4555443 256788999998865
Q ss_pred CCCCcceEEEECCCC--cEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHH-HHHHHHH----hhC
Q 018939 253 CRASDYGLMKIDRSG--QIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTD-VLLNLLR----SSY 325 (348)
Q Consensus 253 ~~~~~~g~v~id~~g--~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~-vl~~ll~----~~~ 325 (348)
..||++..|++| +|++|.||+.. ++.+++|+|+|++. .|...+. ...
T Consensus 142 ---p~yG~v~~d~~g~~~V~~i~EK~~~-----------------------s~~~~~GiY~f~~~~~~~~~l~~~i~~~~ 195 (255)
T 4evw_A 142 ---DNWSFAKPEHAGSTKVIQTAEKNPI-----------------------SDLCSTGLYHFNRKEDYLEAYREYVARPS 195 (255)
T ss_dssp ---SCSCEEEESSTTCCBEEEEESSSCS-----------------------SSEEEEEEEEESCHHHHHHHHHHHHTSCG
T ss_pred ---CceeEEEECCCCCeEEEEEEeccCc-----------------------cCcEEEeEEEECcHHHHHHHHHHHHhccc
Confidence 389999999888 99999999432 25899999999975 3433332 211
Q ss_pred C---CCcchhhhhHHhccccC-Ceee
Q 018939 326 P---LSNDFGSEIIPASVKDH-NVQV 347 (348)
Q Consensus 326 ~---~~~d~~~diip~l~~~~-~v~~ 347 (348)
+ ....+.+|+++.+++++ .|++
T Consensus 196 ~~~~~gE~~ltd~i~~li~~g~~v~~ 221 (255)
T 4evw_A 196 QEWERGELYIAPLYNELIQKGLNIHY 221 (255)
T ss_dssp GGCSCSCCCSTTHHHHHHHTTCCEEE
T ss_pred ccccCCeEehHHHHHHHHHCCCEEEE
Confidence 1 33445689999988764 4543
No 9
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=99.96 E-value=1.7e-28 Score=232.63 Aligned_cols=219 Identities=16% Similarity=0.194 Sum_probs=146.0
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCC-----C
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLG-----N 165 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~-----~ 165 (348)
..|++||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+.+.|.+. .
T Consensus 13 ~~~~avIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~~l~~~l~~~ 91 (297)
T 2ux8_A 13 PLRKAVFPVAGLGTRFLPATKAMPKEMLPVVDR-PLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYELEATMAAR 91 (297)
T ss_dssp CCCEEEEEECCCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHTSCCHHHHHHHHTT
T ss_pred CccEEEEECCCCccccCccccCCCceeeeECCe-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhhhhhhhhhhhc
Confidence 448899999999999999999999999999999 9999999999999999999999998888887764321000 0
Q ss_pred C---------cccCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccc---cCHHHHH
Q 018939 166 G---------VNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYR---MDYTEFL 233 (348)
Q Consensus 166 g---------~~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~---~d~~~ll 233 (348)
+ ...+. .+.++... +..||+++++.++..+. .++|+|++||++++ .++..++
T Consensus 92 ~~~~~~~~~~~~~g~-~i~~~~~~---------~~~Gt~~al~~a~~~~~------~~~~lv~~~D~~~~~~~~~l~~l~ 155 (297)
T 2ux8_A 92 GKSLDVLDGTRLKPG-NIAYVRQQ---------EPMGLGHAVWCARDIVG------DEPFAVLLPDDFMFGQPGCLKQMV 155 (297)
T ss_dssp TCCGGGGTTSCCSTT-SEEEEECC---------SCCCHHHHHHTTHHHHC------SSCEEEECTTEEEESSSCHHHHHH
T ss_pred cchhhhhhhcccCCC-ceEEEeCC---------CCCChHHHHHHHHHHcC------CCcEEEEeCCeecCCChHHHHHHH
Confidence 0 00111 24444321 24799999999988773 48999999999987 5699999
Q ss_pred HHHHhcCCcEEEEEEecCCCCCCcceEEEECC--CC--cEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEE
Q 018939 234 QKHIDTKADITVSCVPMDDCRASDYGLMKIDR--SG--QIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGV 309 (348)
Q Consensus 234 ~~h~~~~aditi~~~~~~~~~~~~~g~v~id~--~g--~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Gi 309 (348)
+.|.+.++ .++++.+.+...++.||++.+|+ +| +|..|.|||..+.. ..+++++|+
T Consensus 156 ~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~~~~~~~~~~v~~~~ekp~~~~~-------------------~~~~~~~Gi 215 (297)
T 2ux8_A 156 DAYNKVGG-NLICAEEVPDDQTHRYGIITPGTQDGVLTEVKGLVEKPAPGTA-------------------PSNLSVIGR 215 (297)
T ss_dssp HHHHHHCS-EEEEEC-----------CCCCCCBCSSEEEC---------------------------------CCCEEEE
T ss_pred HHHHhcCC-CEEEEEecCcccCCCCCeEEecccCCCceeEEEEEECCCCCCC-------------------CccEEEEEE
Confidence 99987776 56766665433357799888763 55 89999999864321 136789999
Q ss_pred EEEeHHHHHHHHHhhCCC--CcchhhhhHHhccccCCeee
Q 018939 310 YLFRTDVLLNLLRSSYPL--SNDFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 310 Yif~~~vl~~ll~~~~~~--~~d~~~diip~l~~~~~v~~ 347 (348)
|+|++++|.. ++...+. ..-...|+++.++++.+|++
T Consensus 216 yi~~~~~l~~-l~~~~~~~~~~~~l~d~i~~l~~~~~v~~ 254 (297)
T 2ux8_A 216 YILQPEVMRI-LENQGKGAGGEIQLTDAMQRMIGDQPFHG 254 (297)
T ss_dssp EEECTHHHHH-HHHTC--------CCTTGGGGTTTSCEEE
T ss_pred EEECHHHHHH-HHhhCCCCCCeeEHHHHHHHHHhcCCEEE
Confidence 9999998754 4543332 11123688888887766654
No 10
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=99.96 E-value=3.5e-28 Score=232.00 Aligned_cols=232 Identities=16% Similarity=0.219 Sum_probs=165.0
Q ss_pred CCCCeeEEEEeCCCCccCCCCCCCCCccceee--CCcchHHHHHHHHhHhcCCCeEEEEccCCc-hhHHHHHHHhccCCC
Q 018939 89 DPKNVAAIILGGGAGTRLFPLTNRRAKPAVPI--GGNYRLIDIPMSNCINSGFNKIFIMTQFNS-FSLNRHLARSYNLGN 165 (348)
Q Consensus 89 ~~~~~~aIILAgG~GtRl~pLT~~~PKpllpI--gGk~pLId~~l~~l~~aGi~~IvVvt~~~~-~~l~~hl~r~y~~~~ 165 (348)
+||+|.+||||||.||||+| ||+|+|| +|+ |||+|+++++.++|+++|+|++++.. +.+.+|+...+.+
T Consensus 2 ~~m~~~~vIlAaG~g~R~~~-----~K~l~~ig~~g~-pli~~~l~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~~-- 73 (303)
T 3pnn_A 2 NAMKPTLFVLAAGMGSRYGS-----LKQLDGIGPGGD-TIMDYSVYDAIRAGFGRLVFVIRHSFEKEFREKILTKYEG-- 73 (303)
T ss_dssp -CCCCEEEEECTTCBCTTSS-----BCCCCCCSTTSC-CHHHHHHHHHHHHTCCEEEEEECGGGHHHHHHHTHHHHTT--
T ss_pred CCCceEEEEECCCCcccCCC-----CceEeEcCCCCe-eHHHHHHHHHHHCCCCeEEEEcCchHHHHHHHHHHHHhcc--
Confidence 46789999999999999987 6999999 588 99999999999999999999999985 7888888654311
Q ss_pred CcccCCCcEEEEecccC---C---CcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHh
Q 018939 166 GVNFGDGFVEVLAATQT---P---GEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHID 238 (348)
Q Consensus 166 g~~~~~~~v~vl~~~q~---~---~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~ 238 (348)
+. .+.++..... . ......+++||++|++++++++ .++|+|++||++++.+ +..+++.|.+
T Consensus 74 ----~~-~i~~~~~~~~~~~~~~~~~~~~~~~~Gt~~al~~a~~~i-------~~~~lV~~gD~l~~~~~~~~l~~~~~~ 141 (303)
T 3pnn_A 74 ----RI-PVELVFQELDRLPEGFSCPEGREKPWGTNHAVLMGRDAI-------REPFAVINADDFYGRNGFEVLARKLMT 141 (303)
T ss_dssp ----TS-CEEEEECCTTCCCTTCCCCTTCCSCCCHHHHHHTTTTTC-------CSCEEEEESSCBCCHHHHHHHHHHHHT
T ss_pred ----CC-cEEEEecccccccccccccccccccCCcHHHHHHHHHhc-------CCCEEEEECCeecCHHHHHHHHHHHHH
Confidence 11 1343322210 0 0000124589999999997665 3799999999999886 8999999986
Q ss_pred ---cCCcEEEEEEecCCCCCCcc-----eEEEECCCCcEEEEEeCCCCCCCCC---cc-cccccccCCCCCCCCCCceeE
Q 018939 239 ---TKADITVSCVPMDDCRASDY-----GLMKIDRSGQIIQFAEKPKGPDLKG---MQ-CDTTLLGLSMPDAVKFPYIAS 306 (348)
Q Consensus 239 ---~~aditi~~~~~~~~~~~~~-----g~v~id~~g~V~~~~EKp~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~a~ 306 (348)
.++++++++.+++++ .+.| |++.+|++|+|++|.|||+.....+ +. ..+..+. ...+++++
T Consensus 142 ~~~~~~~~~v~~~~~~~~-~~~~g~~~~G~v~~d~~g~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~------~~~~~~i~ 214 (303)
T 3pnn_A 142 LEGKQGEYCMVGYRVGNT-LSESGGVSRGVCQVDEKHLLTGVVERTGIERTDGTISFRDETGKICT------LAEDAPVS 214 (303)
T ss_dssp TTTCSSEEEEEEEEGGGS-CBTTBCEEEEEEEECTTSBEEEEEEEEEEEEETTEEEEECTTSCEEE------ECTTCEEE
T ss_pred hccccCceEEEEEECCCc-cCccCceeeeeEeeCCCCcEEEEEECCCCcccccccccccccccccc------CCCCCEEE
Confidence 578899999988653 1445 7899998999999999996421000 00 0000000 00247899
Q ss_pred eEEEEEeHHHHHHHHHh-------hC--CCCcchhhhhHHhccccC--Ceee
Q 018939 307 MGVYLFRTDVLLNLLRS-------SY--PLSNDFGSEIIPASVKDH--NVQV 347 (348)
Q Consensus 307 ~GiYif~~~vl~~ll~~-------~~--~~~~d~~~diip~l~~~~--~v~~ 347 (348)
+|+|+|++++|..+.+. .. +....+..|+++.+++++ +|++
T Consensus 215 ~GiY~f~~~~~~~l~~~~~~~l~~~~~~~~~e~~l~d~i~~li~~g~~~v~~ 266 (303)
T 3pnn_A 215 MNMWGFTPDYFDYSEELFINFLNAHGQEPKSEFFIPFVVNDLIRSGRASVEV 266 (303)
T ss_dssp EEEEEECTHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEECHHHHHHHHHHHHHHHHhcCCCcCCcEEhHHHHHHHHHcCCCcEEE
Confidence 99999999998765321 11 223345689999988876 5654
No 11
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=99.96 E-value=1.5e-27 Score=226.84 Aligned_cols=208 Identities=25% Similarity=0.376 Sum_probs=159.6
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEc-cCCchhHHHHHHHhccCCCCccc
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMT-QFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt-~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
|+|++||||||.||||+|+|...||+|+||+|+ |||+|+++++..+|+++|+|++ .++.+.+.+++. ++..|
T Consensus 1 M~~~aIILAgG~gtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~------~g~~~ 73 (293)
T 1fxo_A 1 MKRKGIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRFQQLLG------DGSNW 73 (293)
T ss_dssp -CEEEEEECCCCCTTTTTHHHHSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHT------TSGGG
T ss_pred CCceEEEECCCCCCcCccccCCCCceeCeECCE-eHHHHHHHHHHHCCCCEEEEEeccccHHHHHHHHh------ccccc
Confidence 458999999999999999999999999999999 9999999999999999998877 455666766664 22233
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCccc-ccCHHHHHHHHHhcCCcEEEEEE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLY-RMDYTEFLQKHIDTKADITVSCV 248 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~-~~d~~~ll~~h~~~~aditi~~~ 248 (348)
+.. +.+.. +. .+.|++++++.++.++. .++++++.||+++ +.++.++++.|.+.+.++++++.
T Consensus 74 g~~-i~~~~--~~-------~~~G~~~al~~a~~~i~------~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~ 137 (293)
T 1fxo_A 74 GLD-LQYAV--QP-------SPDGLAQAFLIGESFIG------NDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAY 137 (293)
T ss_dssp TCE-EEEEE--CS-------SCCCGGGHHHHTHHHHT------TSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEE
T ss_pred Cce-EEEee--CC-------CCCCHHHHHHHHHHHhC------CCCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEE
Confidence 321 33332 22 13699999999988874 3788888899965 56899999999877788888888
Q ss_pred ecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCCC
Q 018939 249 PMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLS 328 (348)
Q Consensus 249 ~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~~ 328 (348)
++.+ +..||++.+|++|+|.+|.|||..+. ++++++|+|+|+++++..+ +...+..
T Consensus 138 ~v~d--p~~~g~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~~~-~~~~~~~ 193 (293)
T 1fxo_A 138 HVLD--PERYGVVEFDQGGKAISLEEKPLEPK---------------------SNYAVTGLYFYDQQVVDIA-RDLKPSP 193 (293)
T ss_dssp ECSC--GGGSEEEEECTTSCEEEEEESCSSCS---------------------SSEEEEEEEEECTTHHHHH-HHCCCCT
T ss_pred ECCC--cccCcEEEECCCCcEEEEEECCCCCC---------------------CCeEEEEEEEEcHHHHHHH-HhcCccc
Confidence 8766 56799999999999999999985332 3689999999999998654 4333321
Q ss_pred -c-chhhhhHHhccccCCe
Q 018939 329 -N-DFGSEIIPASVKDHNV 345 (348)
Q Consensus 329 -~-d~~~diip~l~~~~~v 345 (348)
. -..+|+++.+++...+
T Consensus 194 ~ge~~~td~~~~~l~~g~~ 212 (293)
T 1fxo_A 194 RGELEITDVNRAYLERGQL 212 (293)
T ss_dssp TSSCCHHHHHHHHHHTTCE
T ss_pred CCceeHHHHHHHHHhcCCe
Confidence 1 1236777777665443
No 12
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=99.95 E-value=5.1e-27 Score=223.59 Aligned_cols=205 Identities=23% Similarity=0.371 Sum_probs=158.4
Q ss_pred CeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEcc-CCchhHHHHHHHhccCCCCcccC
Q 018939 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQ-FNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 92 ~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~-~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
.|++||||||.||||+|+|...||+|+||+|+ |||+|+++.+..+|+++|+|+++ +..+.+.+++. ++..|+
T Consensus 3 ~m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~Iivv~~~~~~~~i~~~l~------~g~~~g 75 (295)
T 1lvw_A 3 HMKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLG------DGSQFG 75 (295)
T ss_dssp SCEEEEECCCCCSTTTTTTTSSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHT------TSGGGT
T ss_pred ceEEEEECCCCCCccccccCCCCceecEECCe-eHHHHHHHHHHHCCCCeEEEEeccchHHHHHHHhh------hccccC
Confidence 37899999999999999999999999999999 99999999999999999999886 56666766664 222333
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCccc-ccCHHHHHHHHHhcCCcEEEEEEe
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLY-RMDYTEFLQKHIDTKADITVSCVP 249 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~-~~d~~~ll~~h~~~~aditi~~~~ 249 (348)
. .+.++. +. .+.|++++++.++..+. .++++++.||+++ +.++.++++.|.+.+.++++++.+
T Consensus 76 ~-~i~~~~--~~-------~~~G~~~al~~a~~~i~------~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~ 139 (295)
T 1lvw_A 76 V-RFSYRV--QE-------EPRGIADAFIVGKDFIG------DSKVALVLGDNVFYGHRFSEILRRAASLEDGAVIFGYY 139 (295)
T ss_dssp S-EEEEEE--CS-------SCCCGGGHHHHTHHHHT------TSCEEEEETTCCEECTTHHHHHHHHHTCCSSEEEEEEE
T ss_pred c-eEEEee--CC-------CCCChHHHHHHHHHHhC------CCcEEEEECCccccCcCHHHHHHHHHHcCCCcEEEEEE
Confidence 2 133332 22 13699999999988874 3677777799965 678999999998777788888888
Q ss_pred cCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCC--
Q 018939 250 MDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL-- 327 (348)
Q Consensus 250 ~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~-- 327 (348)
+.+ +..||+|.+|++|+|.+|.|||..+. ++++++|+|+|+++++..+ +...+.
T Consensus 140 v~d--p~~~g~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~f~~~~l~~~-~~~~~~~~ 195 (295)
T 1lvw_A 140 VRD--PRPFGVVEFDSEGRVISIEEKPSRPK---------------------SNYVVPGLYFYDNQVVEIA-RRIEPSDR 195 (295)
T ss_dssp CSC--CTTSEEEEECTTSBEEEEEESCSSCS---------------------CSEECCSEEEECTTHHHHH-HHCCCCTT
T ss_pred CCC--cccCCEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEeEEEcHHHHHHH-HhcCCccc
Confidence 876 55799999999999999999985332 3588999999999998754 433332
Q ss_pred -CcchhhhhHHhccccCC
Q 018939 328 -SNDFGSEIIPASVKDHN 344 (348)
Q Consensus 328 -~~d~~~diip~l~~~~~ 344 (348)
... .+|++..+++...
T Consensus 196 ge~~-~td~~~~~l~~g~ 212 (295)
T 1lvw_A 196 GELE-ITSVNEEYLRMGK 212 (295)
T ss_dssp SCCC-HHHHHHHHHHTTC
T ss_pred Ccee-HHHHHHHHHHcCC
Confidence 122 3677777666544
No 13
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.95 E-value=3e-27 Score=227.21 Aligned_cols=219 Identities=21% Similarity=0.266 Sum_probs=160.4
Q ss_pred CeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCC----C-C
Q 018939 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLG----N-G 166 (348)
Q Consensus 92 ~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~----~-g 166 (348)
.|++||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++.+|+...+.+. . +
T Consensus 12 ~~~aVIlAaG~gtRl~plt~~~pK~ll~i~gk-pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~l~~~~ 90 (323)
T 2pa4_A 12 VKTVVVPAAGLGTRFLPATKTVPKELLPVVDT-PGIELIAAEAAELGATRLAIITAPNKAGVLAHFERSSELEETLMERG 90 (323)
T ss_dssp CCEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECTTCHHHHHTTSCCHHHHHHHHHTT
T ss_pred ceEEEEECCCCccccCccccCCCceeeeECCE-EHHHHHHHHHHhCCCCEEEEEecCcHHHHHHHHhccchhhhhhhccc
Confidence 48899999999999999999999999999999 9999999999999999999999998888877663211000 0 0
Q ss_pred ----------cccCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccc--cCHHHHHH
Q 018939 167 ----------VNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYR--MDYTEFLQ 234 (348)
Q Consensus 167 ----------~~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~--~d~~~ll~ 234 (348)
..++ ..+.++. +. +..||+++++.++..+. ...+.|+|++||++++ .++..+++
T Consensus 91 ~~~~~~~~~~~~~g-~~i~~~~--~~-------~~~Gt~~al~~a~~~l~----~~~d~~lv~~~D~~~~~~~~l~~l~~ 156 (323)
T 2pa4_A 91 KTDQVEIIRRAADL-IKAVPVT--QD-------KPLGLGHAVGLAESVLD----DDEDVVAVMLPDDLVLPTGVMERMAQ 156 (323)
T ss_dssp CHHHHHHTTHHHHH-CEEEEEE--CS-------SCCCHHHHHHTTGGGSC----SSCCEEEEECTTEEEESSCHHHHHHH
T ss_pred hhhhhhhhhccccC-cceEEEe--CC-------ccCCcHHHHHHHHHHhc----CCCCeEEEEeCCcccCchHHHHHHHH
Confidence 0001 1133332 21 23799999999886663 1123499999999886 56999999
Q ss_pred HHHhcCCcEEEEEEecCCCCCCcceEEEEC----CCC--cEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeE
Q 018939 235 KHIDTKADITVSCVPMDDCRASDYGLMKID----RSG--QIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMG 308 (348)
Q Consensus 235 ~h~~~~aditi~~~~~~~~~~~~~g~v~id----~~g--~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G 308 (348)
.|.+.++ .++++.+...+..+.||++++| ++| +|..|.|||..+.. ..+++++|
T Consensus 157 ~~~~~~~-~~i~~~~~~~~~~~~yg~v~~d~~~~~~~~~~V~~~~Ekp~~~~~-------------------~~~~~~~G 216 (323)
T 2pa4_A 157 VRAEFGG-SVLCAVEVSEADVSKYGIFEIEADTKDSDVKKVKGMVEKPAIEDA-------------------PSRLAATG 216 (323)
T ss_dssp HHHTTCS-EEEEEEECCGGGGGGSEEEEEEECCSSTTEEEEEEEEESCCTTTC-------------------SCSEEEEE
T ss_pred HHHhcCC-cEEEEEEecccccCCccEEEeCCcccCCCceeEEEEEECCCCccc-------------------cccEEEEE
Confidence 9987765 5676666643336789999887 554 99999999964321 14689999
Q ss_pred EEEEeHHHHHHHHHhhCCC---CcchhhhhHHhcccc-CCeee
Q 018939 309 VYLFRTDVLLNLLRSSYPL---SNDFGSEIIPASVKD-HNVQV 347 (348)
Q Consensus 309 iYif~~~vl~~ll~~~~~~---~~d~~~diip~l~~~-~~v~~ 347 (348)
+|+|++++|.. ++...+. ... ..++++.++++ .+|++
T Consensus 217 iY~~~~~~~~~-l~~~~~~~~ge~~-l~d~i~~l~~~g~~v~~ 257 (323)
T 2pa4_A 217 RYLLDRKIFDA-LRRITPGAGGELQ-LTDAIDLLIDEGHPVHI 257 (323)
T ss_dssp EEEEETHHHHH-HHHCCCCGGGCCC-HHHHHHHHHHTTCCEEE
T ss_pred EEEECHHHHHH-HHhhCCCCCCeEe-HHHHHHHHHHcCCCEEE
Confidence 99999998865 4443332 222 37899988876 56653
No 14
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=99.95 E-value=3.2e-27 Score=225.11 Aligned_cols=205 Identities=26% Similarity=0.370 Sum_probs=158.2
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEcc-CCchhHHHHHHHhccCCCCcccCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQ-FNSFSLNRHLARSYNLGNGVNFGD 171 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~-~~~~~l~~hl~r~y~~~~g~~~~~ 171 (348)
|++||||||.||||+|+|...||+|+||+|+ |||+|+++.+..+|+++|+|+++ ++.+.+.+++. ++..|+.
T Consensus 4 m~aIILAgG~GtRl~plT~~~pK~llpi~gk-pli~~~l~~l~~~gi~~I~vv~~~~~~~~i~~~l~------~g~~~g~ 76 (296)
T 1mc3_A 4 MKGIILAGGSGTRLHPITRGVSKQLLPIYDK-PMIYYPLSVLMLAGIREILIITTPEDKGYFQRLLG------DGSEFGI 76 (296)
T ss_dssp CEEEEECCCCCGGGHHHHTTSCGGGSEETTE-ETTHHHHHHHHHTTCCEEEEEECTTTHHHHHHHHT------TSGGGTC
T ss_pred cEEEEECCCCCCcCCcccCCCCceeeEECCe-eHHHHHHHHHHhCCCCcEEEEechhHHHHHHHHHh------cccccCc
Confidence 7899999999999999999999999999999 99999999999999999999886 56666766664 2223332
Q ss_pred CcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCccc-ccCHHHHHHHHHhcCCcEEEEEEec
Q 018939 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLY-RMDYTEFLQKHIDTKADITVSCVPM 250 (348)
Q Consensus 172 ~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~-~~d~~~ll~~h~~~~aditi~~~~~ 250 (348)
.+.++. +. .+.|++++++.++.++. .++++++.||+++ +.++.++++.|.+.+.++++++.++
T Consensus 77 -~i~~~~--~~-------~~~G~~~al~~a~~~i~------~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v 140 (296)
T 1mc3_A 77 -QLEYAE--QP-------SPDGLAQAFIIGETFLN------GEPSCLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQV 140 (296)
T ss_dssp -EEEEEE--CS-------SCCCSTHHHHHTHHHHT------TSCEEEEETTEEEECSSCHHHHHHHTTCCSSEEEEEEEC
T ss_pred -eEEEec--cC-------CCCCHHHHHHHHHHHhC------CCCEEEEECCccccccCHHHHHHHHHHcCCCCEEEEEEC
Confidence 133332 22 13699999999988874 3677777799964 6689999999987777888888888
Q ss_pred CCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCC---
Q 018939 251 DDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL--- 327 (348)
Q Consensus 251 ~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~--- 327 (348)
.+ +..||++.+|++|+|.+|.|||..+. .+++++|+|+|+++++.. ++...+.
T Consensus 141 ~d--p~~yg~v~~d~~g~v~~~~ekp~~~~---------------------s~~~~~Giy~~~~~~l~~-~~~~~~~~~g 196 (296)
T 1mc3_A 141 MD--PERFGVVEFDDNFRAISLEEKPKQPK---------------------SNWAVTGLYFYDSKVVEY-AKQVKPSERG 196 (296)
T ss_dssp SC--CSSSBBCEEETTEEEEECCBSCSSCS---------------------CSEEEEEEEECCTHHHHH-HHSCCCCSSS
T ss_pred CC--cccCCEEEECCCCcEEEEEECCCCCC---------------------CCEEEEEEEEEcHHHHHH-HHhcCccccC
Confidence 76 56799999999999999999985432 368999999999999865 4443332
Q ss_pred CcchhhhhHHhccccCCe
Q 018939 328 SNDFGSEIIPASVKDHNV 345 (348)
Q Consensus 328 ~~d~~~diip~l~~~~~v 345 (348)
... .+|++..+++...+
T Consensus 197 e~~-~td~~~~~l~~g~~ 213 (296)
T 1mc3_A 197 ELE-ITSINQMYLEAGNL 213 (296)
T ss_dssp SCC-HHHHHHHHHHTTCE
T ss_pred Ccc-HHHHHHHHHhcCCe
Confidence 122 36777776665443
No 15
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=99.95 E-value=8.3e-27 Score=222.74 Aligned_cols=195 Identities=18% Similarity=0.317 Sum_probs=137.0
Q ss_pred CCeeEEEEeCCCCccCCCCCC-CCCccceee-CCcchHHHHHHHHhHhcCCCeEEEEccCCc-hhHHHHHHHhccCCCCc
Q 018939 91 KNVAAIILGGGAGTRLFPLTN-RRAKPAVPI-GGNYRLIDIPMSNCINSGFNKIFIMTQFNS-FSLNRHLARSYNLGNGV 167 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~-~~PKpllpI-gGk~pLId~~l~~l~~aGi~~IvVvt~~~~-~~l~~hl~r~y~~~~g~ 167 (348)
++|.+||||||.||||+|||. .+||||+|| +|+ |||+|+++++.++ +++|+|++++.. +.+.+++...
T Consensus 3 ~~~~avIlAgG~gtRl~plt~~~~pK~ll~i~gg~-pli~~~l~~l~~~-~~~i~vv~~~~~~~~i~~~~~~~------- 73 (308)
T 2qh5_A 3 LKIKNILLSGGSGKRLWPLSRSLYPKQFLKLFDHK-SLFELSFKRNASL-VDETLIVCNEKHYFLALEEIKNE------- 73 (308)
T ss_dssp CCEEEEEECC-------------CCGGGCTTBTTB-CHHHHHHHHHHTT-CSEEEEEEEGGGHHHHHHHTTTT-------
T ss_pred CccEEEEEcCCCCccCCccCCCCCCCEEEECCCCC-CHHHHHHHHHHcc-CCCEEEEEChhHHHHHHHHHHHh-------
Confidence 458999999999999999996 799999999 588 9999999999999 999999999875 3455555311
Q ss_pred ccCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCccc-ccC-HHHHHHH---HHhcCCc
Q 018939 168 NFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLY-RMD-YTEFLQK---HIDTKAD 242 (348)
Q Consensus 168 ~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~-~~d-~~~ll~~---h~~~~ad 242 (348)
|+...+.++... +..||+++++.++..+. ..++|+|++||+++ +.+ +.++++. |.+.+++
T Consensus 74 -~~~~~~~~i~~~---------~~~gt~~al~~a~~~l~-----~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (308)
T 2qh5_A 74 -IKNKSVGFLLES---------LSKNTANAIALSALMSD-----KEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFL 138 (308)
T ss_dssp -CSSCEEEEEEES---------SCCCHHHHHHHHHHTSC-----TTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCE
T ss_pred -hCCCccEEEeCC---------CCCChHHHHHHHHHHhC-----CCCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCE
Confidence 221124444322 13699999999987662 24569999999988 666 8999987 7777888
Q ss_pred EEEEEEecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHH
Q 018939 243 ITVSCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR 322 (348)
Q Consensus 243 iti~~~~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~ 322 (348)
+|+.+.+..+ .+.||++++|++|+|..|.|||.......+. ....+++++|+|+|++++|...++
T Consensus 139 ~t~~~~~~~~--~~~~g~i~~d~~~~V~~~~Ekp~~~~~~~~~-------------~~g~~~~n~Giy~~~~~~ll~~l~ 203 (308)
T 2qh5_A 139 VTFGVSIDKP--NTEFGYIESPNGLDVKRFIEKPSLDKAIEFQ-------------KSGGFYFNSGMFVFQAGVFLDELK 203 (308)
T ss_dssp EEEEEECSSC--CTTSEEEECSSSSBCSEEEESCCHHHHHHHH-------------HHCCEEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEecCCC--CCCceEEEECCCCEEEEEEECCChHHHHHHh-------------hcCCeEEEeEEEEEEHHHHHHHHH
Confidence 9998888754 5679999988789999999998643110000 001478999999999998866665
Q ss_pred hh
Q 018939 323 SS 324 (348)
Q Consensus 323 ~~ 324 (348)
..
T Consensus 204 ~~ 205 (308)
T 2qh5_A 204 KH 205 (308)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 16
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=99.93 E-value=1e-25 Score=218.29 Aligned_cols=191 Identities=20% Similarity=0.309 Sum_probs=140.4
Q ss_pred eeEEEEeCCCCccCCCCC-CCCCccceeeCC-cchHHHHHHHHhHhc-CCCeEEEEccCCch-hHHHHHHHhccCCCCcc
Q 018939 93 VAAIILGGGAGTRLFPLT-NRRAKPAVPIGG-NYRLIDIPMSNCINS-GFNKIFIMTQFNSF-SLNRHLARSYNLGNGVN 168 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT-~~~PKpllpIgG-k~pLId~~l~~l~~a-Gi~~IvVvt~~~~~-~l~~hl~r~y~~~~g~~ 168 (348)
|.+||||||.||||+||| ..+||+|+|++| + |||+|+++++.++ |+++|+|++++... .+.+++. ....
T Consensus 2 m~~VILAgG~GtRl~Pls~~~~pK~ll~l~g~~-pli~~~l~~l~~~~~~~~iivvt~~~~~~~i~~~l~------~~~~ 74 (336)
T 2x65_A 2 MKALILAGGSGERFWPLSTPETPKQFLKLFGNK-SLMRWTFERVLEEMDPKDVIVVTHKDYVERTKKELP------ELPD 74 (336)
T ss_dssp CEEEEECCCBCGGGTTTSCTTCBGGGCCCBTTB-CHHHHHHHHHHTTCCGGGEEEEEEGGGHHHHHHHCT------TSCG
T ss_pred eEEEEECCCCCccCCCCcCCCCCceEEECCCCC-cHHHHHHHHHhccCCCCcEEEEcChHHHHHHHHHhh------cccc
Confidence 789999999999999999 689999999999 7 9999999999996 89999999998753 3444442 1101
Q ss_pred cCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCccccc--CHHH----HHHHHHhcCCc
Q 018939 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRM--DYTE----FLQKHIDTKAD 242 (348)
Q Consensus 169 ~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~--d~~~----ll~~h~~~~ad 242 (348)
+ .+ ++.+ +..||++++..+...+ ...+.++|++||+++.. +|.. +++.|.+.++.
T Consensus 75 ~---~i-i~e~----------~~~gta~ai~~a~~~~-----~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~ 135 (336)
T 2x65_A 75 E---NI-IAEP----------MKKNTAPACFIGTKLA-----DDDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGL 135 (336)
T ss_dssp G---GE-EEES----------SCCCHHHHHHHHHTTS-----CTTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSE
T ss_pred c---eE-EeCC----------CCCCcHHHHHHHHHhh-----CCCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCe
Confidence 1 12 2221 1369999999887533 13578999999998753 4544 44557665778
Q ss_pred EEEEEEecCCCCCCcceEEEECCC-----CcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHH
Q 018939 243 ITVSCVPMDDCRASDYGLMKIDRS-----GQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVL 317 (348)
Q Consensus 243 iti~~~~~~~~~~~~~g~v~id~~-----g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl 317 (348)
+|+.+.|... .+.||+++.|++ ++|..|.|||..+..+.+. ....|++++|+|+|++++|
T Consensus 136 vt~~i~p~~~--~~~yG~I~~~~~~~~~~~~V~~f~EKp~~~~a~~~~-------------~~g~y~~n~Giy~~~~~~l 200 (336)
T 2x65_A 136 FTFGIVPTRP--ETGYGYIEIGEELEEGVHKVAQFREKPDLETAKKFV-------------ESGRFLWNSGMFLWKAREF 200 (336)
T ss_dssp EEEEECCCSC--CSSSEEEEEEEEEETTEEEEEEEEESCCHHHHHHHH-------------HHTCEEEEEEEEEEEHHHH
T ss_pred EEEEeecccC--CCCceEEEECCccCCCccEEEEEEECCChHHHHHHH-------------hcCCeEEEeeeEEEEHHHH
Confidence 8888777654 478999998765 7999999999754211100 0124789999999999998
Q ss_pred HHHHHhh
Q 018939 318 LNLLRSS 324 (348)
Q Consensus 318 ~~ll~~~ 324 (348)
...++..
T Consensus 201 l~~l~~~ 207 (336)
T 2x65_A 201 IEEVKVC 207 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
No 17
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=99.92 E-value=4.3e-24 Score=213.52 Aligned_cols=206 Identities=18% Similarity=0.242 Sum_probs=160.1
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
-++||||||.|+||++ .+||+|+|++|+ |||+|+++++.++|+++|+|++++..+++.+++ .++
T Consensus 12 ~~~vIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iivv~~~~~~~i~~~~------~~~------ 75 (468)
T 1hm9_A 12 NFAIILAAGKGTRMKS---DLPKVLHKVAGI-SMLEHVFRSVGAIQPEKTVTVVGHKAELVEEVL------AGQ------ 75 (468)
T ss_dssp EEEEEECCCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHTTCCSEEEEEECTTHHHHHHSS------SSS------
T ss_pred CcEEEEcCCCCccCCC---CCCcEeeEECCc-cHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHh------CCC------
Confidence 4699999999999974 789999999999 999999999999999999999999876654433 221
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc--ccccCHHHHHHHHHhcCCcEEEEEEec
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH--LYRMDYTEFLQKHIDTKADITVSCVPM 250 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~--l~~~d~~~ll~~h~~~~aditi~~~~~ 250 (348)
+.++... +..||+++++.++..+++ ..++|+|++||+ +...++.++++.|.+.++++++++.+.
T Consensus 76 -i~~v~~~---------~~~G~~~sl~~a~~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~ 141 (468)
T 1hm9_A 76 -TEFVTQS---------EQLGTGHAVMMTEPILEG----LSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAET 141 (468)
T ss_dssp -SEEEECS---------SCCCHHHHHHTTHHHHTT----CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEEC
T ss_pred -cEEEeCC---------ccCChHHHHHHHHHHhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 3444321 247999999999988741 258999999999 445679999999999899999998887
Q ss_pred CCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCC---
Q 018939 251 DDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL--- 327 (348)
Q Consensus 251 ~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~--- 327 (348)
.+ +..||++.+|++|+|..|.|||..... ....+++++|+|+|+++.|...++...+.
T Consensus 142 ~~--~~~~g~v~~d~~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~ 202 (468)
T 1hm9_A 142 DN--PFGYGRIVRNDNAEVLRIVEQKDATDF-----------------EKQIKEINTGTYVFDNERLFEALKNINTNNAQ 202 (468)
T ss_dssp SC--CTTSCEEEECTTCCEEEEECTTTCCTT-----------------GGGCCEEEEEEEEEEHHHHHHHHTTCCSCSTT
T ss_pred CC--CCceeEEEECCCCCEEEEEECCCCChH-----------------HhcCeEEEEEEEEEEHHHHHHHHHhhccccCC
Confidence 65 567999999999999999999853211 01247899999999999877666543322
Q ss_pred CcchhhhhHHhcccc-CCeee
Q 018939 328 SNDFGSEIIPASVKD-HNVQV 347 (348)
Q Consensus 328 ~~d~~~diip~l~~~-~~v~~ 347 (348)
...+.+|+++.+++. .++++
T Consensus 203 ~~~~~~d~~~~l~~~g~~v~~ 223 (468)
T 1hm9_A 203 GEYYITDVIGIFRETGEKVGA 223 (468)
T ss_dssp CSCCTTHHHHHHHHHTCCEEE
T ss_pred CeEEHHHHHHHHHHCCCEEEE
Confidence 224458999988875 45653
No 18
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=99.91 E-value=1.6e-24 Score=201.49 Aligned_cols=197 Identities=19% Similarity=0.288 Sum_probs=139.5
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
++|.+||||||.||||+|+|..+||+|+||+|+ |||+|+++++.++|+++|+|++++..+++. ++.+.| +
T Consensus 24 ~~~~aiIlAaG~gtRl~plt~~~pK~l~~i~gk-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~-~~~~~~--------~ 93 (254)
T 1jyk_A 24 IRVKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQFD-YLKEKY--------G 93 (254)
T ss_dssp CCCEEEEEECSCCGGGTTTTSSSCGGGCEETTE-EHHHHHHHHHHHTTCCCEEEEECTTGGGGT-HHHHHH--------C
T ss_pred cCceEEEECCCCcccCCcccCCCCCEEeeECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHH-HHHHhC--------C
Confidence 468999999999999999999999999999999 999999999999999999999998877764 443444 1
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCHHHHHHHHHhcCCcEEEEEEec
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDYTEFLQKHIDTKADITVSCVPM 250 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~~~ll~~h~~~~aditi~~~~~ 250 (348)
++++...+. ...||+++++.++..+ ++++|++||+++..++ ++.+.+.++.++ ...
T Consensus 94 ---~~iv~~~~~-------~~~g~~~al~~a~~~~--------~~~lv~~~D~~~~~~~---~~~~~~~~~~~t---~~~ 149 (254)
T 1jyk_A 94 ---VRLVFNDKY-------ADYNNFYSLYLVKEEL--------ANSYVIDADNYLFKNM---FRNDLTRSTYFS---VYR 149 (254)
T ss_dssp ---CEEEECTTT-------TTSCTHHHHHTTGGGC--------TTEEEEETTEEESSCC---CCSCCCSEEEEE---CEE
T ss_pred ---cEEEECCCc-------cCCCcHHHHHHHHHHC--------CCEEEEeCCcccCHHH---HHHHHhCCceEE---EEc
Confidence 344443221 1268999998886544 3589999999876553 222333333233 233
Q ss_pred CCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHH---HHHHhhCCC
Q 018939 251 DDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLL---NLLRSSYPL 327 (348)
Q Consensus 251 ~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~---~ll~~~~~~ 327 (348)
.+. ...|+++ +|++|+|..|.|++. ..++++|+|+|+++.+. .+++...+.
T Consensus 150 ~~~-~~~~~v~-~d~~g~v~~~~e~~~------------------------~~~~~~Giy~~~~~~~~~l~~~l~~~~~~ 203 (254)
T 1jyk_A 150 EDC-TNEWFLV-YGDDYKVQDIIVDSK------------------------AGRILSGVSFWDAPTAEKIVSFIDKAYVS 203 (254)
T ss_dssp SSC-SSCCEEE-ECTTCBEEEEECCCS------------------------SEEBCCSEEEECHHHHHHHHHHHHHHHTT
T ss_pred ccC-CCCeEEE-ECCCCeEEEEEECCC------------------------CCcEEEEEEEEcHHHHHHHHHHHHHHHhc
Confidence 332 2358765 888899999999752 24689999999987443 333332221
Q ss_pred ---CcchhhhhHHhccccCCeee
Q 018939 328 ---SNDFGSEIIPASVKDHNVQV 347 (348)
Q Consensus 328 ---~~d~~~diip~l~~~~~v~~ 347 (348)
...+.+++++.+....+|++
T Consensus 204 ~~~~e~~~~d~~~~l~~~~~v~~ 226 (254)
T 1jyk_A 204 GEFVDLYWDNMVKDNIKELDVYV 226 (254)
T ss_dssp TCCTTCCTTHHHHTTGGGCCEEE
T ss_pred CCccccCHHHHHHHHHhhCCeEE
Confidence 34456778877776666654
No 19
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=99.91 E-value=3.7e-24 Score=207.43 Aligned_cols=193 Identities=21% Similarity=0.297 Sum_probs=140.4
Q ss_pred CCeeEEEEeCCCCccCCCCC-CCCCccceeeCC-cchHHHHHHHHhHhc-CCCeEEEEccCCchhHHHHHHHhccCCCCc
Q 018939 91 KNVAAIILGGGAGTRLFPLT-NRRAKPAVPIGG-NYRLIDIPMSNCINS-GFNKIFIMTQFNSFSLNRHLARSYNLGNGV 167 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT-~~~PKpllpIgG-k~pLId~~l~~l~~a-Gi~~IvVvt~~~~~~l~~hl~r~y~~~~g~ 167 (348)
|+|.+||||||.||||+||| ..+||+|+||+| + |||+|+++++.++ |+++|+|++++.... .+.++ ++.
T Consensus 1 M~m~~VILAgG~GtRl~Pls~~~~pK~ll~l~G~~-pli~~~l~~l~~~~~~~~iiVvt~~~~~~---~i~~~--l~~-- 72 (337)
T 2cu2_A 1 MKTYALVMAGGRGERLWPLSREDRPKPFLPLFEGK-TLLEATLERLAPLVPPERTLLAVRRDQEA---VARPY--ADG-- 72 (337)
T ss_dssp CCEEEEEECCCCCGGGTTTCBTTBCGGGCBCGGGC-BHHHHHHHHHTTTSCGGGEEEEEEGGGHH---HHGGG--CSS--
T ss_pred CCeEEEEEcCCCcccCCccCCCCCCceEEEcCCCC-hHHHHHHHHHhCcCCCCCEEEEcChHHHH---HHHHH--hcc--
Confidence 35899999999999999999 689999999999 7 9999999999998 899999999986432 22222 221
Q ss_pred ccCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCccccc--CHHHHHH----HHHhcCC
Q 018939 168 NFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRM--DYTEFLQ----KHIDTKA 241 (348)
Q Consensus 168 ~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~--d~~~ll~----~h~~~~a 241 (348)
..+ ++.+ +..||++++..+.. +... ...+.++|++||+++.. +|..+++ .|.+ ++
T Consensus 73 ----~~~-i~e~----------~~~gta~ai~~a~~-l~~~--~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~-~~ 133 (337)
T 2cu2_A 73 ----IRL-LLEP----------LGRDTAGAVLLGVA-EALK--EGAERLLVLPADHYVGDDEAYREALATMLEAAEE-GF 133 (337)
T ss_dssp ----SEE-EEES----------SCCHHHHHHHHHHH-HHHH--HTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCT-TC
T ss_pred ----Cce-EecC----------CCCCcHHHHHHHHH-Hhcc--CCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHc-CC
Confidence 112 3321 13689999998887 5421 13578999999998753 3554444 3443 67
Q ss_pred cEEEEEEecCCCCCCcceEEEECCC----CcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHH
Q 018939 242 DITVSCVPMDDCRASDYGLMKIDRS----GQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVL 317 (348)
Q Consensus 242 diti~~~~~~~~~~~~~g~v~id~~----g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl 317 (348)
.+|+.+.|..+ .+.||+++.+++ ++|..|.|||..+..+.+. ... |++++|+|+|++++|
T Consensus 134 ~vt~~i~p~~~--~t~yG~I~~~~~~~~~~~V~~f~EKp~~~~a~~~~-------------~~g-~~~n~Giy~f~~~~l 197 (337)
T 2cu2_A 134 VVALGLRPTRP--ETEYGYIRLGPREGAWYRGEGFVEKPSYAEALEYI-------------RKG-YVWNGGVFAFAPATM 197 (337)
T ss_dssp EEEEEECCSSC--CSSSCEEEEEEEETTEEEEEEEECCCCHHHHHHHH-------------HTT-CEEEEEEEEECHHHH
T ss_pred eEEEeeccCCC--CCCceEEEECCcccccCeEEEEEeCCChHHHHHHh-------------hcC-CEEEEEEEEEeHHHH
Confidence 78888877654 578999998876 8999999999743211100 011 789999999999998
Q ss_pred HHHHHhhCC
Q 018939 318 LNLLRSSYP 326 (348)
Q Consensus 318 ~~ll~~~~~ 326 (348)
...++...|
T Consensus 198 l~~l~~~~p 206 (337)
T 2cu2_A 198 AELFRRHLP 206 (337)
T ss_dssp HHHHHHHCH
T ss_pred HHHHHHHCH
Confidence 666665433
No 20
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=99.90 E-value=7.9e-23 Score=189.83 Aligned_cols=190 Identities=19% Similarity=0.304 Sum_probs=141.3
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
|++.+||||||.|||| | +|+|+||+|+ |||+|+++.+.++|+++|+|+++ .+.+.+++. .| |
T Consensus 1 M~~~aiIlA~G~stRl-p-----~K~L~~i~Gk-Pli~~~l~~l~~~~~~~ivVv~~--~~~i~~~~~-~~--------g 62 (252)
T 3oam_A 1 MSFTVVIPARYQSTRL-P-----GKPLADIGGK-PMIQWVYEQAMQAGADRVIIATD--DERVEQAVQ-AF--------G 62 (252)
T ss_dssp CCEEEEEECCCCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHH-HT--------T
T ss_pred CceEEEEecCcCCCCC-C-----CcceeeECCE-EHHHHHHHHHHhCCCCeEEEECC--HHHHHHHHH-Hc--------C
Confidence 4688999999999999 3 7999999999 99999999999999999999995 466777664 23 2
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-cc-ccCHHHHHHHHHhcCCcEEEEEE
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LY-RMDYTEFLQKHIDTKADITVSCV 248 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~-~~d~~~ll~~h~~~~aditi~~~ 248 (348)
++++...+ ++..||++ +..++..+. ....+.|++++||. ++ ..++..+++.|.+.++++++++.
T Consensus 63 ---~~v~~~~~-------~~~~Gt~~-~~~~~~~l~---~~~~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~ 128 (252)
T 3oam_A 63 ---GVVCMTSP-------NHQSGTER-LAEVVAKMA---IPADHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAV 128 (252)
T ss_dssp ---CEEEECCT-------TCCSHHHH-HHHHHHHTT---CCTTSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEE
T ss_pred ---CEEEEcCC-------CCCCcHHH-HHHHHHhcC---cCCCCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEee
Confidence 33333222 12468888 455555442 01358999999999 44 45689999999988899999999
Q ss_pred ecCCCCCCcc-----eEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCC-CCCCceeEeEEEEEeHHHHHHHHH
Q 018939 249 PMDDCRASDY-----GLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDA-VKFPYIASMGVYLFRTDVLLNLLR 322 (348)
Q Consensus 249 ~~~~~~~~~~-----g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~GiYif~~~vl~~ll~ 322 (348)
++++ +++| |.|.+|++|+|+.|.++|..+...... .+.+ ....+++++|+|+|++++|..+..
T Consensus 129 ~v~~--~~~~~~p~~g~vv~d~~g~v~~fsr~~i~~~~~~~~---------~~~~~~~~~~~~n~GiY~~~~~~l~~~~~ 197 (252)
T 3oam_A 129 EIED--EAEVFNPNAVKVITDKSGYALYFSRATIPWDRDNFA---------KADKAIVQPLLRHIGIYAYRAGFINTYLD 197 (252)
T ss_dssp EECC--HHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHH---------SSSCCCCSCEEEEEEEEEEETTHHHHHHH
T ss_pred ecCC--HHHhhCCCceEEEECCCCeEEEEeCCCCCCCCCccc---------cccccccccceEEEEEEEcCHHHHHHHHc
Confidence 9876 3445 899999999999999998654310000 0000 012578999999999999998765
Q ss_pred h
Q 018939 323 S 323 (348)
Q Consensus 323 ~ 323 (348)
.
T Consensus 198 ~ 198 (252)
T 3oam_A 198 W 198 (252)
T ss_dssp S
T ss_pred C
Confidence 4
No 21
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=99.90 E-value=6.6e-23 Score=204.06 Aligned_cols=204 Identities=19% Similarity=0.289 Sum_probs=155.7
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
|+|.+||||||.|+||++ .+||+|+|++|+ |||+|+++.+.++|+++|+|++++..+.+.+++.+ +
T Consensus 7 ~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~i~~~~~~-~--------- 72 (459)
T 4fce_A 7 SSMSVVILAAGKGTRMYS---DLPKVLHPLAGK-PMVQHVIDAAMKLGAQHVHLVYGHGGELLKKTLAD-P--------- 72 (459)
T ss_dssp CCEEEEEEECCCCGGGCC---SSCGGGSEETTE-EHHHHHHHHHHHHTCSCEEEEESSCHHHHHHHC-------------
T ss_pred CcceEEEECCCCCccCCC---CCCcccCeeCCe-eHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhcc-C---------
Confidence 469999999999999975 789999999999 99999999999999999999999987777665531 1
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc--ccccCHHHHHHHHHhcCCcEEEEEE
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH--LYRMDYTEFLQKHIDTKADITVSCV 248 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~--l~~~d~~~ll~~h~~~~aditi~~~ 248 (348)
.+.++... +..||+++++.++..++ ..+++++++||+ +...++.++++.|.+ .++++++.
T Consensus 73 --~~~~v~~~---------~~~g~~~~i~~~~~~~~-----~~~~~lv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~ 134 (459)
T 4fce_A 73 --SLNWVLQA---------EQLGTGHAMQQAAPHFA-----DDEDILMLYGDVPLISVDTLQRLLAAKPE--GGIGLLTV 134 (459)
T ss_dssp ----CEEECS---------SCCCHHHHHHHHGGGSC-----TTSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEE
T ss_pred --CcEEEeCC---------CCCCcHHHHHHHHHhcC-----CCCcEEEEeCCcccCCHHHHHHHHHHHhh--CCEEEEEE
Confidence 13344321 23799999999987763 358999999999 345668999988864 56788888
Q ss_pred ecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhC---
Q 018939 249 PMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSY--- 325 (348)
Q Consensus 249 ~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~--- 325 (348)
+..+ +..||++..| +|+|..|.|||..... ....+++++|+|+|+++.|..+++...
T Consensus 135 ~~~~--~~~~g~v~~~-~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 194 (459)
T 4fce_A 135 KLDN--PSGYGRIVRE-NGDVVGIVEHKDASDA-----------------QREINEINTGILVANGRDLKRWLSLLDNNN 194 (459)
T ss_dssp ECSC--CTTSCEEEEE-TTEEEEEECGGGCCTT-----------------GGGCCEEEEEEEEEEHHHHHHHHHTCCCCS
T ss_pred ecCC--CCcccEEEeC-CCcEEEEEECCCCChH-----------------HhhccEEEEEEEEEEHHHHHHHHHHhCccc
Confidence 8765 5679999887 7999999999754321 112478999999999999877776532
Q ss_pred CCCcchhhhhHHhcccc-CCee
Q 018939 326 PLSNDFGSEIIPASVKD-HNVQ 346 (348)
Q Consensus 326 ~~~~d~~~diip~l~~~-~~v~ 346 (348)
.....+.+|+++.+.+. .+++
T Consensus 195 ~~~~~~~~d~~~~~~~~g~~v~ 216 (459)
T 4fce_A 195 AQGEFYITDIIALAHADGKKIA 216 (459)
T ss_dssp TTCSCCTTHHHHHHHHTTCCEE
T ss_pred cCCcEEHHHHHHHHHHCCCeEE
Confidence 22334557888877765 3454
No 22
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=99.88 E-value=3.7e-22 Score=198.49 Aligned_cols=200 Identities=21% Similarity=0.300 Sum_probs=152.0
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
+++.+||||||.|+||.+ .+||+|+|++|+ |||+|+++++.++|+++|+|++++..+.+.+++.+ +
T Consensus 4 ~~~~aiIlA~G~g~Rl~~---~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~-~--------- 69 (456)
T 2v0h_A 4 KALSAVILAAGKGTRMYS---DLPKVLHTIAGK-PMVKHVIDTAHQLGSENIHLIYGHGGDLMRTHLAN-E--------- 69 (456)
T ss_dssp CCEEEEEECCCCCGGGCS---SSCGGGSEETTE-EHHHHHHHHHHHTTCSCEEEEECTTHHHHHHHTTT-C---------
T ss_pred CcceEEEECCCCCcccCC---CCCccccEECCc-cHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhhc-C---------
Confidence 568999999999999964 689999999999 99999999999999999999999987666655421 1
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc--ccccCHHHHHHHHHhcCCcEEEEEE
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH--LYRMDYTEFLQKHIDTKADITVSCV 248 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~--l~~~d~~~ll~~h~~~~aditi~~~ 248 (348)
.++++... +..|++++++.++..++ ..+++++++||+ +...++.++++.|.+ +++++++.
T Consensus 70 --~~~~v~~~---------~~~g~~~~~~~~~~~~~-----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~--~~~~~~~~ 131 (456)
T 2v0h_A 70 --QVNWVLQT---------EQLGTAHAVQQAAPFFK-----DNENIVVLYGDAPLITKETLEKLIEAKPE--NGIALLTV 131 (456)
T ss_dssp --CCEEEECS---------CCCCHHHHHHHHGGGCC-----TTSEEEEEETTCTTCCHHHHHHHHHHCCT--TSEEEEEE
T ss_pred --CcEEEeCC---------CCCCcHHHHHHHHHhcC-----CCCeEEEEcCCcceeCHHHHHHHHHHHhc--CCEEEEEe
Confidence 13444321 23699999999987663 258999999999 334678999998865 67888888
Q ss_pred ecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCCC-
Q 018939 249 PMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPL- 327 (348)
Q Consensus 249 ~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~~- 327 (348)
+..+ +..|+++..| +|+|..|.|||..... ....+++++|+|+|+++.|...++...+.
T Consensus 132 ~~~~--~~~~g~v~~~-~g~v~~~~ek~~~~~~-----------------~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~ 191 (456)
T 2v0h_A 132 NLDN--PTGYGRIIRE-NGNVVAIVEQKDANAE-----------------QLNIKEVNTGVMVSDGASFKKWLARVGNNN 191 (456)
T ss_dssp ECSS--CTTSCEEEEE-TTEEEEEECTTTCCHH-----------------HHTCCEEEEEEEEEEHHHHHHHHTTCCCCS
T ss_pred ecCC--CCccceEEEc-CCcEEEEEECCCCChh-----------------HhcCcEEEEEEEEEEHHHHHHHHHHhcccc
Confidence 8765 5669988887 7999999998753210 01246899999999999887776543222
Q ss_pred --CcchhhhhHHhcccc
Q 018939 328 --SNDFGSEIIPASVKD 342 (348)
Q Consensus 328 --~~d~~~diip~l~~~ 342 (348)
...+.+|+++.++..
T Consensus 192 ~~~~~~~~d~~~~~~~~ 208 (456)
T 2v0h_A 192 AQGEYYLTDLIALANQD 208 (456)
T ss_dssp TTCCCCGGGHHHHHHHT
T ss_pred ccccEEHHHHHHHHHHc
Confidence 223457888876654
No 23
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=99.87 E-value=8.3e-22 Score=193.23 Aligned_cols=186 Identities=21% Similarity=0.390 Sum_probs=143.5
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
|++||||||.|+||+|||..+||+|+|++|+ |||+|+++++.++|+++|+|++++. +.+++.+.+ .
T Consensus 1 m~aiIlA~G~g~R~~plt~~~~K~ll~i~g~-pli~~~l~~l~~~~~~~i~vv~~~~---i~~~~~~~~---~------- 66 (401)
T 2ggo_A 1 MKAFILAAGSGERLEPITHTRPKAFVPILSK-PLIEYQIEYLRKCGIRDITVIVSSK---NKEYFEKKL---K------- 66 (401)
T ss_dssp CEEEEECCCCCGGGTTGGGTSCGGGCEETTE-EHHHHHHHHHHHTTCCEEEEEECGG---GHHHHHHHC---T-------
T ss_pred CeEEEEcCcCccccCcccCCCCcceeeECCE-eHHHHHHHHHHHCCCCEEEEEeCHH---HHHHhhccC---C-------
Confidence 6799999999999999999999999999999 9999999999999999999999886 666765322 1
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccc--cCHHHHHHHHHhcCCcEEEEEEec
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYR--MDYTEFLQKHIDTKADITVSCVPM 250 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~--~d~~~ll~~h~~~~aditi~~~~~ 250 (348)
.+.++.... |+.|++++++.+.. .++++++.||+++. .++.++++ .+++++++.+.
T Consensus 67 ~i~~~~~~~--------~~~g~~~~l~~~~~---------~~~~lv~~~D~~~~~~~~~~~l~~-----~~~~~i~~~~~ 124 (401)
T 2ggo_A 67 EISIVTQKD--------DIKGTGAAILSAKF---------NDEALIIYGDLFFSNEKEICNIIT-----LKENAIIGVKV 124 (401)
T ss_dssp TCEEEECCT--------TCCBSTTTGGGCCC---------SSEEEEEETTEEESCSHHHHHHTT-----CSSEEEEEEEC
T ss_pred cEEEEeCCC--------CCCChHHHHHHhcc---------CCCEEEEeCccccccHHHHHHHHH-----hcCCEEEEEEc
Confidence 144444221 24688888876532 47899999999876 45666665 46788888887
Q ss_pred CCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhhCC---C
Q 018939 251 DDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---L 327 (348)
Q Consensus 251 ~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~~~---~ 327 (348)
.+ ...|+++..+++|+|..|.|||..+. .+++++|+|+|++++|.. ++...+ +
T Consensus 125 ~~--~~~~~~v~~~~~g~v~~~~ek~~~~~---------------------~~~~~~Giy~~~~~~~~~-l~~~~~~~~~ 180 (401)
T 2ggo_A 125 SN--PKDYGVLVLDNQNNLSKIIEKPEIPP---------------------SNLINAGIYKLNSDIFTY-LDKISISERG 180 (401)
T ss_dssp SC--CSSSCEEEECTTSSEEEEECSCSSCS---------------------CSEEEEEEEEEETHHHHH-HHHSCCCSSS
T ss_pred CC--CcceeEEEECCCCeEEEEEECCCCCC---------------------CcEEEEEEEEEcHHHHHH-hhhcCcCCCC
Confidence 65 56789999998899999999985432 368999999999999865 444322 1
Q ss_pred CcchhhhhHHhc
Q 018939 328 SNDFGSEIIPAS 339 (348)
Q Consensus 328 ~~d~~~diip~l 339 (348)
...+ .++++.+
T Consensus 181 ~~~~-~~~~~~~ 191 (401)
T 2ggo_A 181 ELEL-TDAINLM 191 (401)
T ss_dssp CBCH-HHHHHHH
T ss_pred ceEH-HHHHHHH
Confidence 2333 5777766
No 24
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=99.85 E-value=2.4e-20 Score=175.02 Aligned_cols=193 Identities=18% Similarity=0.258 Sum_probs=137.4
Q ss_pred CCCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcc
Q 018939 89 DPKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVN 168 (348)
Q Consensus 89 ~~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~ 168 (348)
..|++.+||||||.|||| | +|+|+||+|+ |||+|+++++.++|+++|+|+|+ .+.+.+++. .|
T Consensus 15 ~~M~~~aIIlA~G~stRl-p-----~K~L~~i~Gk-Pmi~~~l~~l~~~~i~~IvV~t~--~~~i~~~~~-~~------- 77 (264)
T 3k8d_A 15 SHMSFVVIIPARYASTRL-P-----GKPLVDINGK-PMIVHVLERARESGAERIIVATD--HEDVARAVE-AA------- 77 (264)
T ss_dssp ---CCEEEEECCSCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHH-HT-------
T ss_pred CCCceEEEEEcCCCCCCC-C-----CcceeeECCe-EHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHH-Hc-------
Confidence 346789999999999999 2 5999999999 99999999999999999999995 456666553 33
Q ss_pred cCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-c-ccCHHHHHHHHHhcCCcEEEE
Q 018939 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-Y-RMDYTEFLQKHIDTKADITVS 246 (348)
Q Consensus 169 ~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~-~~d~~~ll~~h~~~~aditi~ 246 (348)
+ ++++...+ +++.||+. +..++..+. ....+.|+++.||.. + ...+..+++.|.+.+++++++
T Consensus 78 -g---~~v~~~~~-------~~~~Gt~~-i~~~~~~l~---~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~ 142 (264)
T 3k8d_A 78 -G---GEVCMTRA-------DHQSGTER-LAEVVEKCA---FSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATL 142 (264)
T ss_dssp -T---CEEEECCT-------TCCSHHHH-HHHHHHHHT---CCTTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEE
T ss_pred -C---CEEEEecC-------CCCCCHHH-HHHHHHHhc---cCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEE
Confidence 2 33333222 23468876 777776663 124589999999993 3 456899999999888999999
Q ss_pred EEecCCCC----CCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHH
Q 018939 247 CVPMDDCR----ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR 322 (348)
Q Consensus 247 ~~~~~~~~----~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~ 322 (348)
+.++.+.. +..+. |.+|++|+++.|+|||.......... .+.....+++.++|+|+|++++|..+..
T Consensus 143 ~~~v~d~~~~~~p~~vk-Vv~d~~g~~l~fsr~~ip~~r~~~~~--------~~~~~~~~~~~~~GiY~y~~~~l~~~~~ 213 (264)
T 3k8d_A 143 AVPIHNAEEAFNPNAVK-VVLDAEGYALYFSRATIPWDRDRFAE--------GLETVGDNFLRHLGIYGYRAGFIRRYVN 213 (264)
T ss_dssp EEECCSHHHHTCTTSCE-EEECTTSBEEEEESSCCSCCHHHHHH--------CSSCCCSCCEEECSEEEEEHHHHHHHHH
T ss_pred EEEcCCHHHccCCCceE-EEECCCCeEEEEecCCCCCCCccccc--------cccccCCcceEEEEEEEECHHHHHHHHh
Confidence 99987521 12233 45799999999999986422100000 0000112478999999999999998765
No 25
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=99.84 E-value=1.7e-19 Score=168.49 Aligned_cols=193 Identities=18% Similarity=0.242 Sum_probs=132.3
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
|++.+||||||.||||. ||+|+||+|+ |||+|+++.+.++|+++|+|+|+ .+.+.+++. .+ |
T Consensus 8 M~~~aIIlA~G~stRl~------~K~L~~i~Gk-Pli~~~l~~l~~~~i~~VvVvt~--~~~i~~~~~-~~--------g 69 (256)
T 3tqd_A 8 MEFRVIIPARFDSTRLP------GKALVDIAGK-PMIQHVYESAIKSGAEEVVIATD--DKRIRQVAE-DF--------G 69 (256)
T ss_dssp -CCEEEEECCCC---CT------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEES--CHHHHHHHH-HT--------T
T ss_pred CCceEEEEcCCCCCCCC------CCCeeeECCc-hHHHHHHHHHHhCCCCEEEEECC--HHHHHHHHH-Hc--------C
Confidence 67899999999999993 8999999999 99999999999999999999986 456666653 23 2
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-ccc-cCHHHHHHHHHhc-CCcEEEEE
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDT-KADITVSC 247 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~-~d~~~ll~~h~~~-~aditi~~ 247 (348)
++++...+ +++.||+. +..++..+. ....+.|+++.||. ++. ..+..+++.|.+. ++++++++
T Consensus 70 ---~~v~~~~~-------~~~~Gt~~-i~~a~~~l~---~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~ 135 (256)
T 3tqd_A 70 ---AVVCMTSS-------DHQSGTER-IAEAAVALG---FEDDEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLC 135 (256)
T ss_dssp ---CEEEECCT-------TCCSHHHH-HHHHHHHTT---CCTTCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEE
T ss_pred ---CeEEEeCC-------CCCCcHHH-HHHHHHHhC---cCCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEe
Confidence 33333222 23468876 677766552 11358999999999 443 4688999999874 66788888
Q ss_pred EecCCC----CCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHh
Q 018939 248 VPMDDC----RASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS 323 (348)
Q Consensus 248 ~~~~~~----~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~ 323 (348)
.++.+. .+..++ |.+|++|+++.|+|+|......... .........+++...|+|.|++++|..+...
T Consensus 136 ~~v~~~~~~~~p~~vk-vv~d~~g~~l~fsr~pip~~r~~~~-------~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~l 207 (256)
T 3tqd_A 136 TPITEVDELFNPHSTK-VVLNRRNYALYFSHAPIPWGRDTFS-------DKENLQLNGSHYRHVGIYAYRVGFLEEYLSW 207 (256)
T ss_dssp EECCCHHHHTCTTSCE-EEECTTSBEEEEESSCSSCCTTTTT-------CGGGCCCSSCCEEEEEEEEEEHHHHHHHHHS
T ss_pred eEcCCHHHhhCCCccE-EEECCCCEEeEEecCCCCCCCcccc-------cccccccCCcceEEEEEEEcCHHHHHHHHhC
Confidence 887532 123344 5689999999999998643210000 0000001135789999999999999987543
No 26
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=99.82 E-value=3.7e-19 Score=161.56 Aligned_cols=179 Identities=19% Similarity=0.250 Sum_probs=123.5
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
|++.+||||||.|+||. ||+|+|++|+ |||+|+++++.++ +++|+|++++ +++.+++.+ +
T Consensus 1 m~~~aiIlA~G~g~R~~------~K~l~~i~g~-pli~~~l~~~~~~-~~~i~v~~~~--~~i~~~~~~-~--------- 60 (234)
T 2y6p_A 1 MRRAVIIPARLGSTRLK------EKPLKNLLGK-PLIRWVVEGLVKT-GERVILATDS--ERVKEVVED-L--------- 60 (234)
T ss_dssp -CEEEEEECCSCCTTTT------TGGGCEETTE-EHHHHHHHHHHTT-TSCEEEEESC--HHHHHHHTT-T---------
T ss_pred CceEEEEEcCCCCCCCC------CCcceeECCE-EHHHHHHHHHHHh-CCEEEEECCh--HHHHHHHHh-c---------
Confidence 35889999999999994 8999999999 9999999999999 9999999986 556665531 1
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-ccc-cCHHHHHHHHHhcCCcEEEEEE
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDTKADITVSCV 248 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~-~d~~~ll~~h~~~~aditi~~~ 248 (348)
+.++...+. +..|+++++ .++..+ ..+.+++++||+ +++ .++..+++.|.+.++.++++..
T Consensus 61 ---~~~~~~~~~-------~~~g~~~~~-~~~~~~------~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~ 123 (234)
T 2y6p_A 61 ---CEVFLTPSD-------LPSGSDRVL-YVVRDL------DVDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARK 123 (234)
T ss_dssp ---SEEEECCTT-------CCSHHHHHH-HHHTTC------CCSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred ---eEEEECCcc-------cccchHHHH-HHHHhC------CCCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEecC
Confidence 123221111 125777765 333222 357999999999 777 5799999999877744444443
Q ss_pred ecCC-CCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHH
Q 018939 249 PMDD-CRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR 322 (348)
Q Consensus 249 ~~~~-~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~ 322 (348)
...+ ..+..++ +..|++|+|..|.|||...... + . ..+.++++|+|+|++++|..+..
T Consensus 124 ~~~~~~~~~~~~-~~~~~~g~v~~~~e~~~~~~~~-------------~-~-~~~~~~~~giy~~~~~~l~~~~~ 182 (234)
T 2y6p_A 124 DKEAYERPEDVK-VVLDREGYALYFSRSPIPYFRK-------------N-D-TFYPLKHVGIYGFRKETLMEFGA 182 (234)
T ss_dssp CSGGGGCTTSCE-EEECTTSBEEEEESSCCSCCSS-------------C-C-SSCCEEEEEEEEEEHHHHHHHHH
T ss_pred CHHHhcCCCceE-EEEcCCCCEeeeecCCCCcccc-------------c-c-cceeeEEEEEEEcCHHHHHHHHh
Confidence 2111 0123344 3457889999999987531100 0 0 01356799999999999987664
No 27
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=99.81 E-value=1e-18 Score=159.83 Aligned_cols=181 Identities=19% Similarity=0.309 Sum_probs=126.7
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCC-CeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGF-NKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi-~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
|++.+||||||.|+|| | ||+|+|++|+ |||+|+++.+.++|+ ++|+|++++ +.+.+++. .+
T Consensus 1 m~~~aiIlA~G~~~R~-~-----~K~l~~i~g~-pli~~~i~~~~~~~~~~~ivvv~~~--~~i~~~~~-~~-------- 62 (245)
T 1h7e_A 1 SKAVIVIPARYGSSRL-P-----GKPLLDIVGK-PMIQHVYERALQVAGVAEVWVATDD--PRVEQAVQ-AF-------- 62 (245)
T ss_dssp CCEEEEEECCSCCSSS-T-----TGGGCEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHH-HT--------
T ss_pred CCeEEEEEcCCcCCCC-C-----CCcccccCCc-hHHHHHHHHHHhCCCCCeEEEECCc--HHHHHHHH-Hc--------
Confidence 4588999999999999 5 9999999999 999999999999996 999999986 55666653 22
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCccc-c-cCHHHHHHHHHhc-CCcEEEE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLY-R-MDYTEFLQKHIDT-KADITVS 246 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~-~-~d~~~ll~~h~~~-~aditi~ 246 (348)
+ ++++...+. +..|+++++ .++..+ ..+.++|++||+.+ . .++..+++.|.+. +++++++
T Consensus 63 ~---~~~~~~~~~-------~~~g~~~~~-~~~~~~------~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~ 125 (245)
T 1h7e_A 63 G---GKAIMTRND-------HESGTDRLV-EVMHKV------EADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATL 125 (245)
T ss_dssp T---CEEEECCSC-------CSSHHHHHH-HHHHHS------CCSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEE
T ss_pred C---CeEEeCCCc-------cCCcHHHHH-HHHHhC------CCCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEE
Confidence 1 344432221 235776655 444333 35799999999943 3 4689999999888 7888888
Q ss_pred EEecCCCC--CCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHH
Q 018939 247 CVPMDDCR--ASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL 321 (348)
Q Consensus 247 ~~~~~~~~--~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll 321 (348)
+.+.+... ...+-.+..+++|++..|.+++....... ...+.+.++|+|+|+++.|..++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~r~~---------------~~~~~~~~~g~y~~~~~~l~~~~ 187 (245)
T 1h7e_A 126 CHAISAAEAAEPSTVKVVVNTRQDALYFSRSPIPYPRNA---------------EKARYLKHVGIYAYRRDVLQNYS 187 (245)
T ss_dssp EEEECHHHHTCTTSCEEEECTTCBEEEEESSCSSCCTTG---------------GGCCEEEEEEEEEEEHHHHHHGG
T ss_pred eecCCHHHhcCCCCcEEEECCCCcEEEeecCCCCCCccc---------------ccCceeEEEEEEEcCHHHHHHHH
Confidence 87762110 11121223377899999998754311100 00135779999999999987765
No 28
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=99.81 E-value=9.2e-20 Score=166.10 Aligned_cols=172 Identities=15% Similarity=0.218 Sum_probs=117.2
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
|++|.+||||||.||||+|+ ||+|+|++|+ |||+|+++++.++ +++|+|++ +..+++.+++.+.|
T Consensus 16 m~~~~~iIlA~G~g~R~~~~----~K~l~~i~g~-pli~~~l~~l~~~-~~~i~vv~-~~~~~~~~~~~~~~-------- 80 (232)
T 2xme_A 16 IKLMKAVILAAGLGTRLGGV----PKPLVRVGGC-EIILRTMKLLSPH-VSEFIIVA-SRYADDIDAFLKDK-------- 80 (232)
T ss_dssp CCCEEEEEEECC------CC----CGGGCEETTE-EHHHHHHHHHGGG-EEEEEEEE-STTHHHHHHHHTTS--------
T ss_pred cccceEEEECCcCcCcCCCC----CcEEeEECCE-EHHHHHHHHHHHh-CCEEEEEe-CChHHHHHHHHHhc--------
Confidence 55699999999999999876 9999999999 9999999999999 99999999 77777777764433
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccCH-HHHHHHHHhcCCcEEEEEE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMDY-TEFLQKHIDTKADITVSCV 248 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d~-~~ll~~h~~~~aditi~~~ 248 (348)
+. .+.++.... |..|++++++.++..+ .++++|++||++++.++ ..+++ .. .+ ++..
T Consensus 81 ~~-~~~~v~~~~--------~~~g~~~~i~~a~~~~-------~~~~lv~~~D~p~~~~~~~~l~~----~~-~~-~~~~ 138 (232)
T 2xme_A 81 GF-NYKIVRHDR--------PEKGNGYSLLVAKNHV-------EDRFILTMGDHVYSQQFIEKAVR----GE-GV-IADR 138 (232)
T ss_dssp CC-CEEEEECSC--------GGGCHHHHHHTTGGGC-------CSSEEEEETTEEECHHHHHHHTT----CC-EE-EEES
T ss_pred CC-cEEEEECCC--------CCCCcHHHHHHHHHHC-------CCCEEEEcCCcccCHHHHHHHHh----CC-Cc-EEEc
Confidence 11 155554221 2269999999887554 26799999999875553 34433 22 12 2221
Q ss_pred ecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHh
Q 018939 249 PMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS 323 (348)
Q Consensus 249 ~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~ 323 (348)
........+++.+..+ +|+|..|.|++.. .+.+++|+|+|++++|.. +..
T Consensus 139 ~~~~~~~~~~~~v~~~-~g~v~~~~~~~~~-----------------------~~~~~~g~~~~~~~~~~~-l~~ 188 (232)
T 2xme_A 139 EPRFVDIGEATKIRVE-DGRVAKIGKDLRE-----------------------FDCVDTGFFVLDDSIFEH-AEK 188 (232)
T ss_dssp SCSSSCTTTSCEEEEE-TTEEEEEETTCSS-----------------------CSEEEEEEEEECTTHHHH-HGG
T ss_pred cccccCCCcceEEEEc-CCEEEEeecCCCC-----------------------cceEEEEEEEECHHHHHH-HHH
Confidence 1111123457777775 6899999987642 146799999999999875 444
No 29
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=99.79 E-value=6.7e-18 Score=156.77 Aligned_cols=193 Identities=18% Similarity=0.238 Sum_probs=129.7
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
|++.+||||||.|+||. +|+|+||+|+ |||+|+++++.++++++|+|++++ +.+.+++. .+ +
T Consensus 1 m~~~aiIlA~G~g~R~~------~K~l~~~~gk-pli~~~l~~l~~~~~~~ivvv~~~--~~i~~~~~-~~--------~ 62 (262)
T 1vic_A 1 MSFTVIIPARFASSRLP------GKPLADIKGK-PMIQHVFEKALQSGASRVIIATDN--ENVADVAK-SF--------G 62 (262)
T ss_dssp -CCEEEEECCCCCSSST------TGGGCEETTE-EHHHHHHHHHHHTTCSEEEEEESC--HHHHHHHH-HT--------T
T ss_pred CCcEEEEEcCCCCCCCC------CCccccCCCe-EHHHHHHHHHHhCCCceEEEECCc--HHHHHHHH-hc--------C
Confidence 35789999999999993 4999999999 999999999999999999999975 45656553 23 1
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-c-ccCHHHHHHHHHhcCCcEEEEEE
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-Y-RMDYTEFLQKHIDTKADITVSCV 248 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~-~~d~~~ll~~h~~~~aditi~~~ 248 (348)
+.++...+ .+..|++ .+..++..+.. ...+.++|++||+. . ..++..+++.|.+.++++++++.
T Consensus 63 ---~~~~~~~~-------~~~~g~~-~~~~~~~~l~~---~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~ 128 (262)
T 1vic_A 63 ---AEVCMTSV-------NHNSGTE-RLAEVVEKLAI---PDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAV 128 (262)
T ss_dssp ---CEEEECCC-------SSCCHHH-HHHHHHHHTTC---CTTCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred ---CEEEECCc-------cccCChH-HHHHHHHHhcc---CCCCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEE
Confidence 33333211 1224665 45555544431 23578999999994 3 45689999999888888888888
Q ss_pred ecCCC---CCCcceEEEECCCCcEEEEEeCCCCCCCCCccc--ccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHH
Q 018939 249 PMDDC---RASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQC--DTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL 321 (348)
Q Consensus 249 ~~~~~---~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll 321 (348)
+..+. ....|..+..|++|++..|.+++.......... ... ....| ..+..++|+|+|++++|..+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~g~v~~f~~~~~~~~r~~~~~~~~~~-~~~~p-----~~~~~~~giy~~~~~~l~~~~ 200 (262)
T 1vic_A 129 KIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQ-KVQLS-----DAYLRHIGIYAYRAGFIKQYV 200 (262)
T ss_dssp ECCCHHHHTCTTSCEEEECTTSBEEEEESSCSSCCHHHHTTCSCGG-GCCCC-----TTCEEEEEEEEEEHHHHHHHH
T ss_pred ecCCHHHhcCCCceEEEECCCCCEeeeecCCCCcCCcccccccccc-ccccc-----cceEEEEEEEEeeHHHHHHHH
Confidence 87652 013355555588899999998763211000000 000 00000 126789999999999988754
No 30
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=99.76 E-value=2.5e-17 Score=165.86 Aligned_cols=206 Identities=14% Similarity=0.175 Sum_probs=139.3
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeC-CcchHHHHHHHHhHhc----C--CCeEEEEccCCchhHHHHHHHhccC
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIG-GNYRLIDIPMSNCINS----G--FNKIFIMTQFNSFSLNRHLARSYNL 163 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIg-Gk~pLId~~l~~l~~a----G--i~~IvVvt~~~~~~l~~hl~r~y~~ 163 (348)
.++.+||||||.|||| +...||||+||. |+ |++++.++++.+. | +.-+++.+.+..+.+.+++.+.-
T Consensus 78 ~k~~vviLAGGlGTRL---g~~~PK~llpv~~gk-p~Le~~i~~l~~~~~~~G~~ip~vimts~~t~e~t~~~f~~~~-- 151 (469)
T 2icy_A 78 DKLVVLKLNGGLGTTM---GCTGPKSVIEVRDGL-TFLDLIVIQIENLNNKYGCKVPLVLMNSFNTHDDTHKIVEKYT-- 151 (469)
T ss_dssp TTEEEEEEECCBSGGG---TCCSBGGGSEEETTE-EHHHHHHHHHHHHHHHHSCCCCEEEEECTTTHHHHHHHHGGGT--
T ss_pred ccceEEEEcCCccccC---CCCCCccccccCCCC-CHHHHHHHHHHHHHHhcCCCccEEEEeCCCCHHHHHHHHHhcc--
Confidence 5699999999999999 578999999999 88 9999999999987 5 45445555555778888886421
Q ss_pred CCCcccCCCcEEEEecccCC-----------Cc------CCccccCCcHHHHHHHH--HHHHhhccCCCceEEEEcCCcc
Q 018939 164 GNGVNFGDGFVEVLAATQTP-----------GE------AGKKWFQGTADAVRQFI--WVFEDAKNKNVENVLILSGDHL 224 (348)
Q Consensus 164 ~~g~~~~~~~v~vl~~~q~~-----------~~------~g~~~~~Gta~Al~~~l--~~i~~~~~~~~e~vLIl~gD~l 224 (348)
.||. .|.++. |.. .+ .-...+.||++++..+. ..+++....+.++++|.++|++
T Consensus 152 ----~fG~-~I~~f~--Q~~~P~i~~e~~~~l~~~~~~~~~e~~P~GtGG~~~~L~~sGll~~l~~~G~e~~~V~n~DnL 224 (469)
T 2icy_A 152 ----NSNV-DIHTFN--QSKYPRVVADEFVPWPSKGKTDKEGWYPPGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDNL 224 (469)
T ss_dssp ----TSSS-CEEEEE--CCCEECEETTTTEEGGGGTCCSGGGEECCCGGGHHHHHHHHSHHHHHHTTTCCEEEEEETTBT
T ss_pred ----cCCc-eEEEEE--ecceeeEccccCccccCCCCCccccCCcCCchHHHHHHHhcCcHHHHHhcCCCEEEEEECCcC
Confidence 2232 133221 110 00 00123689999997652 1123322346799999999999
Q ss_pred cccCHHHHHHHHHhcCCcEEEEEEecCCCCCCcceEEEE-CCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCc
Q 018939 225 YRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKI-DRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPY 303 (348)
Q Consensus 225 ~~~d~~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~i-d~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (348)
.......++..|.++++++++.+.+..+. ...||++.. |...+++++.|+|...... . +.. .. -.
T Consensus 225 ~~~~d~~ll~~~~~~~a~~t~~v~~k~~~-~~~~Gvl~~~dg~~~vvE~~e~p~~~~~e-~---k~~--------~~-~~ 290 (469)
T 2icy_A 225 GAIVDLTILKHLIQNKNEYCMEVTPKTLA-DVKGGTLISYEGKVQLLEIAQVPDEHVNE-F---KSI--------EK-FK 290 (469)
T ss_dssp TCCCCHHHHHHHHHHTCSEEEEEEECCTT-CCSSCEEEEETTEEEEECGGGSCGGGHHH-H---HSS--------SS-CC
T ss_pred CcccCHHHHHHHHHcCCCeeEEEEEeccC-CCceeEEEEECCEEEEEEEeccChhhhhh-h---ccc--------cc-cc
Confidence 87543479999999999999999887652 246888775 3223467777777532100 0 000 01 24
Q ss_pred eeEeEEEEEeHHHHHHHHHh
Q 018939 304 IASMGVYLFRTDVLLNLLRS 323 (348)
Q Consensus 304 ~a~~GiYif~~~vl~~ll~~ 323 (348)
.+|+|+|+|+.++|..+++.
T Consensus 291 ~~N~g~y~~~~~~L~~i~~~ 310 (469)
T 2icy_A 291 IFNTNNLWVNLKAIKKLVEA 310 (469)
T ss_dssp EEEEEEEEEEHHHHHHHHHT
T ss_pred eeeEEEEEEcHHHHHHHHhc
Confidence 56999999999999998775
No 31
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=99.75 E-value=1.1e-17 Score=151.77 Aligned_cols=183 Identities=16% Similarity=0.163 Sum_probs=124.3
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcC-CCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aG-i~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
|++.+||||||.|+||. ||+|+||+|+ |||+|+++.+.+++ +++|+|+++. +.+.+++. .+
T Consensus 3 m~~~aiIlA~G~g~R~~------~K~l~~i~gk-pll~~~l~~~~~~~~~~~ivvv~~~--~~i~~~~~-~~-------- 64 (228)
T 1ezi_A 3 KQNIAVILARQNSKGLP------LKNLRKMNGI-SLLGHTINAAISSKCFDRIIVSTDG--GLIAEEAK-NF-------- 64 (228)
T ss_dssp CEEEEEEECCSSCSSST------TTTTCEETTE-EHHHHHHHHHHHHCCCSEEEEEESC--HHHHHHHH-HT--------
T ss_pred CceEEEEecCCCCCCCC------CcccceeCCc-CHHHHHHHHHHhCCCCCEEEEECCC--HHHHHHHH-Hc--------
Confidence 45779999999999995 8999999999 99999999999988 7999999964 44544442 33
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-cc-cCHHHHHHHHHhcCCcEEEEE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-YR-MDYTEFLQKHIDTKADITVSC 247 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~~-~d~~~ll~~h~~~~aditi~~ 247 (348)
+ +.++....... .+..|++++++.++..+. ...+.+++++||+. .. .++..+++.|.+.++++++.+
T Consensus 65 ~---~~~~~~~~~~~----~~~~g~~~sv~~~l~~~~----~~~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~ 133 (228)
T 1ezi_A 65 G---VEVVLRPAELA----SDTASSISGVIHALETIG----SNSGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSA 133 (228)
T ss_dssp T---CEEEECCC----------CHHHHHHHHHHHHHT----CCSEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEE
T ss_pred C---CEEEeCchHHc----CCCCChHHHHHHHHHHhC----CCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 1 23322111000 012578999999988773 13578999999994 33 468899988877778888888
Q ss_pred EecCCCCCCcceEEEECCCCcEEEEEeCCC-CCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHH
Q 018939 248 VPMDDCRASDYGLMKIDRSGQIIQFAEKPK-GPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNL 320 (348)
Q Consensus 248 ~~~~~~~~~~~g~v~id~~g~V~~~~EKp~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~l 320 (348)
.+..+. + ++.+.+|++|++..|.+... ...... ....+..++|+|+++++.|...
T Consensus 134 ~~~~~~-p--~~~~~~~~~g~~~~~~~~~~~~~~~~~---------------~~~~~~~~~giy~~~~~~l~~~ 189 (228)
T 1ezi_A 134 CPMEHH-P--LKTLLQINNGEYAPMRHLSDLEQPRQQ---------------LPQAFRPNGAIYINDTASLIAN 189 (228)
T ss_dssp EECSSC-T--TSCEEECC--CEEESSCHHHHTCCGGG---------------SCCEEEEEEEEEEEEHHHHHHH
T ss_pred EecCCC-c--ceeeEEcCCCcEeeccccccccCCccc---------------CchhheeeeEEEEEeHHHHhhC
Confidence 887652 1 33333477899998876210 000000 0012456799999999988764
No 32
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0
Probab=99.75 E-value=1.7e-17 Score=153.10 Aligned_cols=180 Identities=16% Similarity=0.183 Sum_probs=122.1
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcC-CCeEEEEccCCchhHHHHHHHhccCCCCcc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNSFSLNRHLARSYNLGNGVN 168 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aG-i~~IvVvt~~~~~~l~~hl~r~y~~~~g~~ 168 (348)
|+++.+||||||.|+||.+ ..+||+++|++|+ |||+|+++++.+++ +++|+|+++........++.+.|...
T Consensus 1 M~~~~aIIlAaG~g~Rm~~--~~~pK~l~~l~Gk-pll~~~l~~~~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~---- 73 (246)
T 3f1c_A 1 MSLIYAQILAGGKGTRMGN--VSMPKQFLPLNGK-PIIVHTVEKFILNTRFDKILISSPKEWMNHAEDNIKKYISD---- 73 (246)
T ss_dssp -CCEEEEEECC-----C-C--SSCCGGGSEETTE-EHHHHHHHHHHTCTTCSEEEEEECGGGHHHHHHHHHHHCCC----
T ss_pred CCccEEEEECCccccccCC--CCCCCeEEEECCe-eHHHHHHHHHHcCCCCCEEEEEeCHHHHHHHHHHHHHhCCC----
Confidence 4568999999999999975 4789999999999 99999999999997 99999999987654333443444111
Q ss_pred cCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhcc-CCCceEEEEcCCc-ccc-cCHHHHHHHHHhcCCcEEE
Q 018939 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKN-KNVENVLILSGDH-LYR-MDYTEFLQKHIDTKADITV 245 (348)
Q Consensus 169 ~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~-~~~e~vLIl~gD~-l~~-~d~~~ll~~h~~~~aditi 245 (348)
..+.++... .+..++++.++..+.+... ...+.++|+.||. +.. ..+..+++.|.+.++. +
T Consensus 74 ---~~~~~~~~~-----------~~~~~sv~~al~~l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~~a~--i 137 (246)
T 3f1c_A 74 ---DRIVVIEGG-----------EDRNETIMNGIRFVEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALETGAV--D 137 (246)
T ss_dssp ---TTEEEEECC-----------SSHHHHHHHHHHHHHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHTSEE--E
T ss_pred ---CCEEEECCC-----------CchHHHHHHHHHHHhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhcCCE--E
Confidence 124544321 3578999999988863100 1258999999998 343 5689999999887654 4
Q ss_pred EEEecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHh
Q 018939 246 SCVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS 323 (348)
Q Consensus 246 ~~~~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~ 323 (348)
.+.+..+ .++..++++.|..+.+|+. .+..-..++|+.+.|...++.
T Consensus 138 ~~~~~~d------~i~~~~~~~~v~~~~~r~~-------------------------l~~~qtpq~f~~~~L~~a~~~ 184 (246)
T 3f1c_A 138 TVIEALD------TIVESSNHEVITDIPVRDH-------------------------MYQGQTPQSFNMKKVFNHYQN 184 (246)
T ss_dssp EEEECSS------CEEECSSSSBCCBCCCGGG-------------------------EEEEEEEEEEEHHHHHHHHHT
T ss_pred EEEeccc------eEEEecCCCeEEEecChHH-------------------------hhhhcCCceeEHHHHHHHHHH
Confidence 4566544 3445455667766655542 223345679999998888765
No 33
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.3e-17 Score=166.91 Aligned_cols=204 Identities=17% Similarity=0.204 Sum_probs=136.3
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeC-CcchHHHHHHHHhHhc----CCC-eEEEEcc-CCchhHHHHHHHhcc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIG-GNYRLIDIPMSNCINS----GFN-KIFIMTQ-FNSFSLNRHLARSYN 162 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIg-Gk~pLId~~l~~l~~a----Gi~-~IvVvt~-~~~~~l~~hl~r~y~ 162 (348)
-.++.+||||||.|||| ....||+|+||. |+ ||++|+++++... |+. .++|+++ +..+.+.+++.+..
T Consensus 90 ~~k~avViLAGG~GTRm---gs~~PK~l~~V~~gk-~~Le~~i~~i~~l~~~~G~~Ip~vImts~~t~e~t~~~~~~~~- 164 (488)
T 2i5k_A 90 LSKLAVLKLNGGLGTSM---GCVGPKSVIEVREGN-TFLDLSVRQIEYLNRQYDSDVPLLLMNSFNTDKDTEHLIKKYS- 164 (488)
T ss_dssp GGGEEEEEECCCBSGGG---TCCSBSTTSCCBTTB-CHHHHHHHHHHHHHHHHTCCCEEEEECCTTTHHHHHHHHGGGC-
T ss_pred cCCceEEEEcCCCcccC---CCCCCccccccCCCC-cHHHHHHHHHHHhHHhcCCCccEEEEECCCCHHHHHHHHHhcc-
Confidence 45788999999999999 468999999999 99 9999999999886 543 4667676 77788888886421
Q ss_pred CCCCcccCCCcEEEEecccCC-----------C-cC-----CccccCCcHHHHHHHH--HHHHhhccCCCceEEEEcCCc
Q 018939 163 LGNGVNFGDGFVEVLAATQTP-----------G-EA-----GKKWFQGTADAVRQFI--WVFEDAKNKNVENVLILSGDH 223 (348)
Q Consensus 163 ~~~g~~~~~~~v~vl~~~q~~-----------~-~~-----g~~~~~Gta~Al~~~l--~~i~~~~~~~~e~vLIl~gD~ 223 (348)
.||. .|.++ .|.. . .. -...+.||++++.... ..++++...+.++++|++||+
T Consensus 165 -----~fg~-~i~~f--~Q~~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga~~~L~~sg~l~~l~~~g~~~v~V~ngDn 236 (488)
T 2i5k_A 165 -----ANRI-RIRSF--NQSRFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN 236 (488)
T ss_dssp -----SSSC-EEEEE--CCCCEECEETTTCCBSCSSSSSCTTSEECCCGGGHHHHHHHHTHHHHHHHTTCCEEEEECTTB
T ss_pred -----ccCc-eEEEE--EeCccceEccccceeeccCCCCCceeeecCCCchhhhhhhhcCcHHHHHhcCCCEEEEEeCCc
Confidence 1221 12221 2220 0 00 0113679999998431 113322224678999999999
Q ss_pred ccc-cCHHHHHHHHHhcCCcEEEEEEecCCCCCC-cceEEEECCCCc--EEEEEeCCCCCCCCCcccccccccCCCCCCC
Q 018939 224 LYR-MDYTEFLQKHIDTKADITVSCVPMDDCRAS-DYGLMKIDRSGQ--IIQFAEKPKGPDLKGMQCDTTLLGLSMPDAV 299 (348)
Q Consensus 224 l~~-~d~~~ll~~h~~~~aditi~~~~~~~~~~~-~~g~v~id~~g~--V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~ 299 (348)
+.. .|+. ++..|.++++++++.+.+..+ +. .||.+..+ +|+ |+++.|.+..... + . ... .
T Consensus 237 L~~~~d~~-~L~~~~~~~a~~t~~v~~~~~--p~~~yG~Iv~~-dG~~~iVE~~e~~~e~~~-~-~--~~~--------~ 300 (488)
T 2i5k_A 237 LGATVDLK-ILNHMIETGAEYIMELTDKTR--ADVKGGTLISY-DGQVRLLEVAQVPKEHID-E-F--KNI--------R 300 (488)
T ss_dssp SSCCCCHH-HHHHHHHSCCSEEEEEEECCG--GGSSSCEEEEE-TTEEEEECGGGSCTTSHH-H-H--TCT--------T
T ss_pred CCCcccHH-HHHHHHhcCCcEEEEEEEecC--CCCceeEEEEE-CCcEEEEEeccCCHHHHh-h-c--ccc--------c
Confidence 876 4675 668899999999999998765 33 49987664 465 4444444432110 0 0 000 0
Q ss_pred CCCceeEeEEEEEeHHHHHHHHHh
Q 018939 300 KFPYIASMGVYLFRTDVLLNLLRS 323 (348)
Q Consensus 300 ~~~~~a~~GiYif~~~vl~~ll~~ 323 (348)
.. ..+|+|+|+|+.+.|..+++.
T Consensus 301 ~~-~~~Ntgi~~f~~~~L~~~l~~ 323 (488)
T 2i5k_A 301 KF-TNFNTNNLWINLKAVKRLIES 323 (488)
T ss_dssp TC-CEEEEEEEEEEHHHHHHHHHT
T ss_pred cc-CEEEEEEEEEeHHHHHHHHhh
Confidence 12 357999999999999998875
No 34
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=99.74 E-value=1.6e-16 Score=147.95 Aligned_cols=189 Identities=17% Similarity=0.241 Sum_probs=128.8
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHH-HHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPM-SNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGD 171 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l-~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~ 171 (348)
+.+||||||.||||. +|+|+||+|+ |||+|++ +.+.++++++|+|+|+. +.+.+++. .+ |
T Consensus 2 ~~aiIlA~G~stR~~------~K~L~~i~Gk-Pli~~~i~~~~~~~~~~~vvVvt~~--~~i~~~~~-~~--------g- 62 (253)
T 4fcu_A 2 KHIVIPARFSSSRLP------GKPLLLIHDR-PMILRVVDQAKKVEGFDDLCVATDD--ERIAEICR-AE--------G- 62 (253)
T ss_dssp EEEEEECCSCCTTST------TGGGSEETTE-EHHHHHHHHHHTCTTCCEEEEEESC--HHHHHHHH-TT--------T-
T ss_pred eEEEEEeCCCCCCCC------CCceeeECCe-EhHHHHHHHHHHhcCCCEEEEECCH--HHHHHHHH-Hc--------C-
Confidence 469999999999994 5999999999 9999999 99999999999999963 55655553 22 2
Q ss_pred CcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-ccc-cCHHHHHHHHHhc-CCcEEEEEE
Q 018939 172 GFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDT-KADITVSCV 248 (348)
Q Consensus 172 ~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~-~d~~~ll~~h~~~-~aditi~~~ 248 (348)
++++...+. +..|| +++..++..+.. ...+.|+++.||. +.+ ..+..+++.|.+. +.+++.++.
T Consensus 63 --~~v~~~~~~-------~~~Gt-~~i~~a~~~~~~---~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~ 129 (253)
T 4fcu_A 63 --VDVVLTSAD-------HPSGT-DRLSEVARIKGW---DADDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCE 129 (253)
T ss_dssp --CCEEECCTT-------CCCHH-HHHHHHHHHHTC---CTTCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEE
T ss_pred --CeEEEeCCC-------CCChH-HHHHHHHHhcCc---CCCCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeE
Confidence 223221111 12466 478888776631 1358999999999 444 4588999999876 345544444
Q ss_pred ecCC----CCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHH
Q 018939 249 PMDD----CRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR 322 (348)
Q Consensus 249 ~~~~----~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~ 322 (348)
+..+ ..+..++ |..|++|+++.|+++|..........+ +......++.+.|+|+|++++|..+..
T Consensus 130 ~~~~~~~~~~p~~~k-vv~d~~g~~l~fsr~~ip~~r~~~~~~--------~~~~~~~~~~~~GiY~f~~~~l~~~~~ 198 (253)
T 4fcu_A 130 PIHALDEFQRDSIVK-VVMSKQNEALYFSRATIPYDRDGAKRD--------EPTLHTQAFRHLGLYAYRVSLLQEYVT 198 (253)
T ss_dssp ECCCHHHHHCTTSCE-EEECTTSBEEEEESSCCSCCTTTSSSS--------SCCCCSCCEEEEEEEEEEHHHHHHHTT
T ss_pred EcCCHHHccCCCccE-EEECCCCeEEEecCCCCCCCCCccccc--------ccccccceeEEEEEEEeCHHHHHHHHh
Confidence 5322 1133444 568899999999998864421100000 000012477899999999999998763
No 35
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=99.73 E-value=1e-16 Score=162.76 Aligned_cols=210 Identities=15% Similarity=0.180 Sum_probs=141.0
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceee---CCcchHHHHHHHHhHh--------cC----CCeEEEEccCCchhHHH
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPI---GGNYRLIDIPMSNCIN--------SG----FNKIFIMTQFNSFSLNR 155 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpI---gGk~pLId~~l~~l~~--------aG----i~~IvVvt~~~~~~l~~ 155 (348)
.+|.+||||||.|||| +...||+|+|| .|+ |++++.++.+.+ .| +..+++...+..+.+.+
T Consensus 101 ~kvavViLAGG~GTRL---g~~~PK~l~pv~~~~gk-~~le~~~e~l~~lq~la~~~~G~~~~ip~vImtS~~t~e~t~~ 176 (505)
T 1jv1_A 101 NKVAVLLLAGGQGTRL---GVAYPKGMYDVGLPSRK-TLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSGRTMESTKE 176 (505)
T ss_dssp TCEEEEEECCCCCCTT---SCSSCGGGCCCCCTTCC-CHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECTTTHHHHHH
T ss_pred CceEEEEEcCCccccC---CCCCCCccceeecCCCC-cHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCHHHHHH
Confidence 5699999999999999 56899999999 799 999999999876 36 66666666677888888
Q ss_pred HHHHhccCCCCcccCC--CcEEEEeccc-------CCC-----cCCccccCCcHHHHHHHHH--HHHhhccCCCceEEEE
Q 018939 156 HLARSYNLGNGVNFGD--GFVEVLAATQ-------TPG-----EAGKKWFQGTADAVRQFIW--VFEDAKNKNVENVLIL 219 (348)
Q Consensus 156 hl~r~y~~~~g~~~~~--~~v~vl~~~q-------~~~-----~~g~~~~~Gta~Al~~~l~--~i~~~~~~~~e~vLIl 219 (348)
++.+.- .||. ..|.+..... ... ..-...+.||++.+..+.. .++++...+.++++|+
T Consensus 177 ~f~~~~------~fGl~~~~I~~f~Q~~~P~i~~~g~~~l~~~~~~e~~P~GtGG~~~~L~~sg~L~~l~~~g~e~~~V~ 250 (505)
T 1jv1_A 177 FFTKHK------YFGLKKENVIFFQQGMLPAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVY 250 (505)
T ss_dssp HHHHTG------GGGSCGGGEEEEECCEEECEETTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEE
T ss_pred HHHhhh------hcCCCcCceEEEEecceEEEcCCCcccccCCcccccCCCCchHHHHHHHHcCcHHHHHhcCCCEEEEE
Confidence 886421 1221 1233221000 000 0000125799999876643 3333323467999999
Q ss_pred cCCcc-cccCHHHHHHHHHhcCCcEEEEEEe-cCCCCCCcceEEEECC-CCcEEEEEeCCCCCCCCCcccccccccCCCC
Q 018939 220 SGDHL-YRMDYTEFLQKHIDTKADITVSCVP-MDDCRASDYGLMKIDR-SGQIIQFAEKPKGPDLKGMQCDTTLLGLSMP 296 (348)
Q Consensus 220 ~gD~l-~~~d~~~ll~~h~~~~aditi~~~~-~~~~~~~~~g~v~id~-~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~ 296 (348)
++|++ +..+...++..|..+++++++.+++ ..+ ...+|++..++ ..+|+++.|+|..... ..+ +.
T Consensus 251 n~Dn~L~~~~d~~~lg~~~~~~~~~~~~v~~k~~~--~e~~Gvl~~~dg~~~vvEy~E~p~~~~~---~~~-------~~ 318 (505)
T 1jv1_A 251 CVDNILVKVADPRFIGFCIQKGADCGAKVVEKTNP--TEPVGVVCRVDGVYQVVEYSEISLATAQ---KRS-------SD 318 (505)
T ss_dssp ETTBTTCCTTCHHHHHHHHHTTCSEEEEEEECCST--TCSCCEEEEETTEEEEECGGGSCHHHHH---CBC-------TT
T ss_pred ECCccccccchHHHHHHHHHcCCCEEEEEEEccCC--ccCcceEEEECCeEEEEEEeeCCHHHhh---hcc-------cc
Confidence 99995 7777778999999999999999987 433 56789887642 2345666666642110 000 00
Q ss_pred CCCCCCceeEeEEEEEeHHHHHHHHHh
Q 018939 297 DAVKFPYIASMGVYLFRTDVLLNLLRS 323 (348)
Q Consensus 297 ~~~~~~~~a~~GiYif~~~vl~~ll~~ 323 (348)
- ...-+.+|+|+|+|+.++|..+.+.
T Consensus 319 g-~~~~~~~N~~~~~f~l~~L~~i~~~ 344 (505)
T 1jv1_A 319 G-RLLFNAGNIANHFFTVPFLRDVVNV 344 (505)
T ss_dssp S-SBSSCEEEEEEEEEEHHHHHHHHHT
T ss_pred c-ccccceeeEEEEEecHHHHHHHHHh
Confidence 0 0113578999999999999988763
No 36
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A*
Probab=99.71 E-value=3.7e-16 Score=141.50 Aligned_cols=176 Identities=15% Similarity=0.170 Sum_probs=112.9
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhc-CCCeEEEEccCCc-hhHHHHHHHhccCCCCcccC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINS-GFNKIFIMTQFNS-FSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~a-Gi~~IvVvt~~~~-~~l~~hl~r~y~~~~g~~~~ 170 (348)
|.+||||||.||||++ ..+||+|+|++|+ |||+|+++++.++ ++++|+|++++.. +.+.+++ +.|+ +.+.
T Consensus 3 ~~~iIlA~G~g~R~~~--~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~~~~~~-~~~~----~~~~ 74 (236)
T 2vsh_A 3 IYAGILAGGTGTRMGI--SNLPKQFLELGDR-PILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLV-DKYL----PLYK 74 (236)
T ss_dssp EEEEEEEC-------------CGGGSEETTE-EHHHHHHHHHHTCTTCCCEEEEECGGGHHHHHHHH-HHHC----GGGG
T ss_pred eEEEEeCCccccccCC--CCCCCeeeeeCCc-cHHHHHHHHHHcCCCCCeEEEEeCHHHHHHHHHHH-Hhcc----cccc
Confidence 7899999999999987 6789999999999 9999999999998 5999999999887 3344444 3441 1110
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccC--CCceEEEEcCCc-ccc-cCHHHHHHHHHhcCCcEEEE
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNK--NVENVLILSGDH-LYR-MDYTEFLQKHIDTKADITVS 246 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~--~~e~vLIl~gD~-l~~-~d~~~ll~~h~~~~aditi~ 246 (348)
..+.+.. .| .|++++++.++..+.+. .. ..+.++|++||+ ++. .++..+++.|.+.++ .++
T Consensus 75 -~~~~~~~-------~~----~~~~~~i~~~l~~~~~~-~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~--~~~ 139 (236)
T 2vsh_A 75 -ERIIITK-------GG----ADRNTSIKNIIEAIDAY-RPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDA--VDT 139 (236)
T ss_dssp -GGEEEEE-------CC----SSHHHHHHHHHHHHHHH-SCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHSSE--EEE
T ss_pred -CceEEEC-------CC----CchHHHHHHHHHHHHhh-ccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhcCc--EEE
Confidence 0122211 11 47899999998877421 01 237899999999 554 468999999987664 345
Q ss_pred EEecCCCCCCcceEEEECCCC-cEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHh
Q 018939 247 CVPMDDCRASDYGLMKIDRSG-QIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS 323 (348)
Q Consensus 247 ~~~~~~~~~~~~g~v~id~~g-~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~ 323 (348)
+.+..+. ++.+++| ++..+.|++. .+.....|+|+++.|..+++.
T Consensus 140 ~~~~~~~-------~~~~~~g~~~~~~~~~~~-------------------------~~~~~~p~~f~~~~l~~~~~~ 185 (236)
T 2vsh_A 140 VVEAVDT-------IVESTNGQFITDIPNRAH-------------------------LYQGQTPQTFRCKDFMDLYGS 185 (236)
T ss_dssp EEECCSC-------EEECSSSSBCCBCCCGGG-------------------------EEEEEEEEEEEHHHHHHHHHT
T ss_pred EEecccc-------EEEeCCCCeeeeecChHH-------------------------heeecCCcEecHHHHHHHHHH
Confidence 5565441 3335667 7877766531 111234799999988877653
No 37
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=99.70 E-value=8.1e-18 Score=153.78 Aligned_cols=159 Identities=15% Similarity=0.174 Sum_probs=115.8
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
|+|.+||||||. |||.+.+...||+|+|++|+ |||+|+++.+..+++ +|+|++.. +.+ +.+ +
T Consensus 1 m~~~~vIlAaG~-tRl~~r~~~~~K~l~~i~g~-pll~~~l~~l~~~~~-~ivvv~~~--~~i-----~~~-~------- 62 (232)
T 2dpw_A 1 MRPSAIVLAGGK-EAWAERFGVGSKALVPYRGR-PMVEWVLEALYAAGL-SPVYVGEN--PGL-----VPA-P------- 62 (232)
T ss_dssp CCCEEEEECCCB-CSGGGTTTCSBGGGSEETTE-ETHHHHHHHHHHTTC-EEEEESCC--SSC-----SSC-C-------
T ss_pred CceeEEEECCCC-CccccccCCCCceeeEECCE-EHHHHHHHHHHhcCC-EEEEEeCh--HHH-----hhh-c-------
Confidence 358899999999 77766655689999999999 999999999999998 88887653 222 122 1
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc--cccCHHHHHHHHHhcCCcEEEEEE
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL--YRMDYTEFLQKHIDTKADITVSCV 248 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l--~~~d~~~ll~~h~~~~aditi~~~ 248 (348)
.+++ . +..|++++++.++..+ . +.++|++||+. ...++..+++ | ..++++++.+.
T Consensus 63 --~~~~---~---------~~~g~~~~i~~a~~~~------~-~~~lv~~~D~P~~~~~~i~~l~~-~-~~~~~~~~~~~ 119 (232)
T 2dpw_A 63 --ALTL---P---------DRGGLLENLEQALEHV------E-GRVLVATGDIPHLTEEAVRFVLD-K-APEAALVYPIV 119 (232)
T ss_dssp --SEEE---C---------CCSSHHHHHHHHHHTC------C-SEEEEEETTCTTCCHHHHHHHHH-H-CCSCSEEEEEE
T ss_pred --CeEe---c---------CCCCHHHHHHHHHHHc------C-CCEEEEeCCcccCCHHHHHHHHh-c-CCCCCEEEEEe
Confidence 1443 1 1269999999997655 2 79999999993 3456888998 7 66778888887
Q ss_pred ecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHH
Q 018939 249 PMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR 322 (348)
Q Consensus 249 ~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~ 322 (348)
+.++. ...|+.+ .++|..+.||| .+++|+|+|++++|..+.+
T Consensus 120 ~~~~~-~~~~~~~----~~~v~~~~ek~---------------------------~~~~g~~~~~~~~l~~~~~ 161 (232)
T 2dpw_A 120 PKEAV-EARFPRT----KRTYARLREGT---------------------------FTGGNLLLLDKSLFRKALP 161 (232)
T ss_dssp EHHHH-HHHCTTC----CCCCEEETTEE---------------------------EEECSEEEEEHHHHTTTHH
T ss_pred eccch-hhhCCCc----ceeEEEEecCc---------------------------eeeeeEEEEcHHHHHHHHH
Confidence 74321 1223322 24577776664 3689999999998876543
No 38
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A*
Probab=99.70 E-value=9.8e-17 Score=145.12 Aligned_cols=171 Identities=16% Similarity=0.178 Sum_probs=112.9
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhc-CCCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINS-GFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~a-Gi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
+++.+||||||.|+||. ...||+|+|++|+ |||+|+++.+.++ ++++|+|++++..+++.+++.+.|
T Consensus 3 ~~~~aiIlAaG~g~R~~---~~~~K~l~~i~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~-------- 70 (228)
T 2yc3_A 3 KSVSVILLAGGQGKRMK---MSMPKQYIPLLGQ-PIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESI-------- 70 (228)
T ss_dssp TCEEEEEECCCCC----------CGGGSEETTE-EHHHHHHHHHHHCTTEEEEEEECCGGGHHHHHTTTTTS--------
T ss_pred cceEEEEECCccccccC---CCCCccEeEECCE-EHHHHHHHHHHcCCCCCeEEEEEChHHHHHHHHHHHhC--------
Confidence 46899999999999995 4579999999999 9999999999998 899999999988766655443222
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-ccc-cCHHHHHHHHHhcCCcEEEEE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYR-MDYTEFLQKHIDTKADITVSC 247 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~-~d~~~ll~~h~~~~aditi~~ 247 (348)
+. .+.++... .|..++++.++..+.+ ..+.++++.||. ++. .++..+++.|.+.++ ++++
T Consensus 71 ~~-~v~~~~~~-----------~~~~~sv~~al~~~~~----~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~~~--~i~~ 132 (228)
T 2yc3_A 71 DV-DLSFAIPG-----------KERQDSVYSGLQEIDV----NSELVCIHDSARPLVNTEDVEKVLKDGSAVGA--AVLG 132 (228)
T ss_dssp SS-EEEEECCC-----------SSHHHHHHHHHTTSCT----TCSEEEEEETTCTTCCHHHHHHHHHHHHHHSE--EEEE
T ss_pred CC-cEEEECCC-----------CCHHHHHHHHHHhhcc----CCCEEEEecCCCccCCHHHHHHHHHHHHhcCc--eEEE
Confidence 11 14443211 4788999999876631 247899999997 444 458899998876653 5556
Q ss_pred EecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHH
Q 018939 248 VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR 322 (348)
Q Consensus 248 ~~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~ 322 (348)
.+..+. +..+|+++.|..+.+++ ..+.....|+|+.+.|...+.
T Consensus 133 ~~~~~~------~~~~~~~~~v~~~~~~~-------------------------~~~~~~~~~~f~~~~l~~~~~ 176 (228)
T 2yc3_A 133 VPAKAT------IKEVNSDSLVVKTLDRK-------------------------TLWEMQTPQVIKPELLKKGFE 176 (228)
T ss_dssp EECCSC------CCCBCTTSCBCCCCSCC-------------------------CCEEEEEEEEECHHHHHHHHH
T ss_pred Eeccce------EEEEcCCCceEEecCcc-------------------------ceEEEeCCcEEEHHHHHHHHH
Confidence 665431 22235556665432211 112233489999887766654
No 39
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A
Probab=99.69 E-value=1.4e-15 Score=137.66 Aligned_cols=175 Identities=15% Similarity=0.187 Sum_probs=110.9
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcC-CCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aG-i~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
++|.+||||||.|+||++ ..||+|+|++|+ |||+|+++.+..++ +++|+|++++..+.+.+ +.+ +..
T Consensus 5 ~~~~aiIlA~G~g~R~~~---~~~K~l~~~~gk-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~-~~~-~~~------ 72 (231)
T 1vgw_A 5 RKNIALIPAAGIGVRFGA---DKPKQYVEIGSK-TVLEHVLGIFERHEAVDLTVVVVSPEDTFADK-VQT-AFP------ 72 (231)
T ss_dssp CCEEEEEECC-------------CCSCCEETTE-EHHHHHHHHHHTCTTCCEEEEECCTTCSTHHH-HHH-HCT------
T ss_pred CceEEEEEcccccccCCC---CCCceEeEECCe-EHHHHHHHHHHcCCCCCeEEEEECccHHHHHH-HHh-cCC------
Confidence 458999999999999975 579999999999 99999999999985 99999999988766655 532 210
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhc-cCCCceEEEEcCCc-cccc-CHHHHHHHHHhcCCcEEEE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAK-NKNVENVLILSGDH-LYRM-DYTEFLQKHIDTKADITVS 246 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~-~~~~e~vLIl~gD~-l~~~-d~~~ll~~h~~~~aditi~ 246 (348)
..+.++. . ..|++++++.++..+.+.. ....+.++|++||+ +.+. .+..+++.|.+.+.. .++
T Consensus 73 --~~i~~~~-~----------~~~~~~si~~~l~~~~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~~~~~-~~~ 138 (231)
T 1vgw_A 73 --QVRVWKN-G----------GQTRAETVRNGVAKLLETGLAAETDNILVHDAARCCLPSEALARLIEQAGNAAEG-GIL 138 (231)
T ss_dssp --TSEEECC-C----------CSSHHHHHHHHHHHHHHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTTCTTC-EEE
T ss_pred --CceEEEc-C----------CCcHHHHHHHHHHHHhhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCe-EEE
Confidence 1244431 1 1589999999988774200 00257899999998 4444 488999988765422 345
Q ss_pred EEecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHh
Q 018939 247 CVPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS 323 (348)
Q Consensus 247 ~~~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~ 323 (348)
+.+..+. ++..++|+|....++ . ..+.....|+|+.+.|..++..
T Consensus 139 ~~~~~~~-------~~~~~~g~i~~~~~~---~----------------------~~~~~~~p~~f~~~~l~~~~~~ 183 (231)
T 1vgw_A 139 AVPVADT-------LKRAESGQISATVDR---S----------------------GLWQAQTPQLFQAGLLHRALAA 183 (231)
T ss_dssp EEECCSC-------EEEESSSBEEEEECC---T----------------------TEEEEEEEEEEEHHHHHHHHHC
T ss_pred Eeecccc-------eEEeCCCceEecCCh---H----------------------HheeeeCCcEecHHHHHHHHHH
Confidence 5565431 122245666543322 1 1222345899999988877654
No 40
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A*
Probab=99.68 E-value=5.3e-16 Score=139.49 Aligned_cols=170 Identities=19% Similarity=0.213 Sum_probs=120.0
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcC-CCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aG-i~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
|++.+||||||.||||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++...+. +.+ + +. +
T Consensus 1 m~~~~vIlA~G~g~R~~---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~i~vv~~~~~~~~---~~~-~-~~-~--- 67 (223)
T 2xwl_A 1 MATVAVVPAAGSGERLR---AGRPKAFVTLGGT-PLLEHALSGLRASGVIDRIVIAVPPALTDE---SKL-V-FG-G--- 67 (223)
T ss_dssp -CEEEEEECCCCCGGGT---SSSCGGGSEETTE-EHHHHHHHHHHHHSCCSEEEEEECGGGHHH---HHH-H-TC-B---
T ss_pred CceEEEEECCccCcccC---CCCCCeeeEECCe-EHHHHHHHHHhcCCCCCeEEEEEcccHHHH---HHH-H-hc-c---
Confidence 35889999999999996 4589999999999 99999999999988 999999999876432 211 1 11 1
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-cccc-CHHHHHHHHHhcCCcEEEEE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRM-DYTEFLQKHIDTKADITVSC 247 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~-d~~~ll~~h~~~~aditi~~ 247 (348)
..+.++.. . .+++++++.++..++ ..+.+++++||+ +.+. ++..+++.|. .+.++++.+
T Consensus 68 --~~v~~~~~--~---------~~~~~~i~~al~~~~-----~~~~vlv~~~D~P~~~~~~i~~l~~~~~-~~~~~~i~~ 128 (223)
T 2xwl_A 68 --EDSVIVSG--G---------VDRTESVALALEAAG-----DAEFVLVHDAARALTPPALIARVVAALK-EGHSAVVPG 128 (223)
T ss_dssp --TTEEEEEC--C---------SSHHHHHHHHHTTCT-----TCSEEEECCTTCTTCCHHHHHHHHHHHH-HTCSEEEEE
T ss_pred --CCeEEEcC--C---------CCHHHHHHHHHHhcC-----CCCEEEEEcCCcccCCHHHHHHHHHHHh-hcCCeEEEE
Confidence 12444431 1 357888988876552 357899999999 4444 6889999883 345677777
Q ss_pred EecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHh
Q 018939 248 VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS 323 (348)
Q Consensus 248 ~~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~ 323 (348)
.+..+ . ..+ .|++|++..+.|++. .+.....|+|++..+..+++.
T Consensus 129 ~~~~d--~--~~~--~~~~g~~~~~~e~~~-------------------------l~~~~~p~~f~~~~l~~~~~~ 173 (223)
T 2xwl_A 129 LAPAD--T--IKA--VDANGAVLGTPERAG-------------------------LRAVQTPQGFHADVLRRAYAR 173 (223)
T ss_dssp ECCSS--C--EEE--ECTTSBEEECCCGGG-------------------------EEEECSCEEEEHHHHHHHHTT
T ss_pred Eeccc--c--eEE--EcCCCcEEeecChHH-------------------------heeeeCCcccCHHHHHHHHHH
Confidence 77654 2 222 377899998877642 112234588999888776543
No 41
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=99.65 E-value=2.3e-15 Score=136.98 Aligned_cols=131 Identities=17% Similarity=0.242 Sum_probs=93.9
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcC-CCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aG-i~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
+++.+||||||.||||. +|+|+||+|+ |||+|+++.+.+++ +++|+|++. .+.+.+++. .+
T Consensus 2 ~~~~aiIlA~G~s~R~~------~K~l~~i~Gk-pli~~~i~~~~~~~~~~~ivv~~~--~~~i~~~~~-~~-------- 63 (229)
T 1qwj_A 2 PHLAALVLARGGSKGIP------LKNIKRLAGV-PLIGWVLRAALDAGVFQSVWVSTD--HDEIENVAK-QF-------- 63 (229)
T ss_dssp CCEEEEEECCSCCSSSS------CTTTSEETTE-EHHHHHHHHHHHHTCCSEEEEEES--CHHHHHHHH-HT--------
T ss_pred CcEEEEEEcCCCCCCCC------CcccceECCE-EHHHHHHHHHHhCCCcCEEEEECC--hHHHHHHHH-Hc--------
Confidence 56889999999999993 5999999999 99999999999998 599999994 455655553 33
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-cc-cCHHHHHHHHHhcCCcEEEEE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-YR-MDYTEFLQKHIDTKADITVSC 247 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~~-~d~~~ll~~h~~~~aditi~~ 247 (348)
+ ++++........ ...+..+++..++..+. ..+.+++++||.. .+ .++..+++.|.+.+++.++.+
T Consensus 64 g---~~~~~~~~~~~~----~~~~~~~~v~~al~~~~-----~~d~vlv~~~D~Pli~~~~i~~l~~~~~~~~~~~~~~~ 131 (229)
T 1qwj_A 64 G---AQVHRRSSETSK----DSSTSLDAIVEFLNYHN-----EVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSV 131 (229)
T ss_dssp T---CEEEECCGGGSS----TTCCHHHHHHHHHTTCT-----TCSEEEEECTTCTTCCHHHHHHHHHHHHSSCCSEEEEE
T ss_pred C---CEEEeChhhhcC----CCCcHHHHHHHHHHhcC-----CCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEE
Confidence 1 333321110000 01344588888876552 3578999999994 34 468999999988888876655
Q ss_pred EecC
Q 018939 248 VPMD 251 (348)
Q Consensus 248 ~~~~ 251 (348)
.+..
T Consensus 132 ~~~~ 135 (229)
T 1qwj_A 132 VRRH 135 (229)
T ss_dssp EEEC
T ss_pred eecc
Confidence 5443
No 42
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii}
Probab=99.65 E-value=1.1e-16 Score=141.75 Aligned_cols=131 Identities=24% Similarity=0.329 Sum_probs=95.1
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
|++||||||.|+||.| .||+|+|++|+ |||+|+++.+.++++++|+|+++++.+.+.+++.+.|.+..
T Consensus 1 m~aiIlA~G~s~R~~~----~~K~l~~~~g~-pli~~~l~~l~~~~~~~v~vv~~~~~~~i~~~~~~~~~~~~------- 68 (196)
T 3rsb_A 1 MDALIMAGGKGTRMGG----VEKPLIKLCGR-CLIDYVVSPLLKSKVNNIFIATSPNTPKTKEYINSAYKDYK------- 68 (196)
T ss_dssp CEEEEEC----CGGGG----SCGGGCEETTE-EHHHHHHHHHHSSSCCCEEEECCTTCHHHHHHHHHHTTTTT-------
T ss_pred CEEEEECCCCCCcCCC----CCccEEEECCE-EHHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHHhhccCCC-------
Confidence 5799999999999976 89999999999 99999999999999999999999998888888876552211
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc--cccCHHHHHHHHHh-----cCCcEEE
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL--YRMDYTEFLQKHID-----TKADITV 245 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l--~~~d~~~ll~~h~~-----~~aditi 245 (348)
.+.++... ..|++++++.++..+ .+.++++.||+. ....+..+++.|.+ .+.+..+
T Consensus 69 ~~~~~~~~----------~~g~~~si~~al~~~-------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~ 131 (196)
T 3rsb_A 69 NIVVIDTS----------GKGYIEDLNECIGYF-------SEPFLVVSSDLINLKSKIINSIVDYFYCIKAKTPDVEALA 131 (196)
T ss_dssp EEEE------------------CCCCCTTTTTC-------SSCEEEEETTEESCCHHHHHHHHHHHHHHHTTCC--CEEE
T ss_pred CEEEEECC----------CCCcHHHHHHHHHhC-------CCCEEEEeCCcccCCHHHHHHHHHHHHhhhcccCCCceEE
Confidence 24444321 157777887776443 489999999993 34568999999987 6777778
Q ss_pred EEEecCC
Q 018939 246 SCVPMDD 252 (348)
Q Consensus 246 ~~~~~~~ 252 (348)
.+.|..+
T Consensus 132 ~~~p~~~ 138 (196)
T 3rsb_A 132 VMIPKEK 138 (196)
T ss_dssp EEEETTT
T ss_pred EEEEccc
Confidence 8888764
No 43
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP}
Probab=99.61 E-value=2.8e-15 Score=132.08 Aligned_cols=124 Identities=15% Similarity=0.257 Sum_probs=93.4
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
+++.+||||||.|+||. .||+++|++|+ |||+|+++.+.++++++|+|++++..+.+.+++. . ++
T Consensus 4 ~~~~~iIlA~G~~~R~g-----~~K~l~~~~g~-pli~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~------~---~~ 68 (199)
T 2waw_A 4 SRVTGVVLAAGYSRRLG-----TPKQLLPLGDT-TLLGATLAMARRCPFDQLIVTLGGAADEVLEKVE------L---DG 68 (199)
T ss_dssp CCEEEEEEESSCCTTTT-----SCGGGCEETTE-EHHHHHHHHHHTSSCSEEEEEECTTHHHHHHHSC------C---TT
T ss_pred CceEEEEECCCCCCCCC-----CCEEeCEeCcc-CHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHHhc------c---CC
Confidence 45889999999999994 79999999999 9999999999999999999999987665544432 1 11
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCccc--ccCHHHHHHHHHhcCCcEEEE
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLY--RMDYTEFLQKHIDTKADITVS 246 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~--~~d~~~ll~~h~~~~aditi~ 246 (348)
+.++.... +..|++++++.++..+. ...+.++|++||+.+ ..++..+++. +.++++++.
T Consensus 69 ---~~~~~~~~--------~~~g~~~~i~~al~~~~----~~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~~~~~ 129 (199)
T 2waw_A 69 ---LDIVLVDD--------AGLGCSSSLKSALTWVD----PTAEGIVLMLGDQPGITASAVASLIAG--GRGATIAVC 129 (199)
T ss_dssp ---SEEEECCC--------CCTTCCCHHHHHHHTSC----TTCSEEEEEETTCTTCCHHHHHHHHHH--HTTCSEEEE
T ss_pred ---CEEEECCC--------cccCHHHHHHHHHHhhh----ccCCeEEEEeCCcccCCHHHHHHHHhh--cCCCCEEEE
Confidence 34443211 23689999999987662 135899999999964 3457888876 456665543
No 44
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A
Probab=99.60 E-value=2.7e-14 Score=129.91 Aligned_cols=131 Identities=15% Similarity=0.208 Sum_probs=95.3
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcC-CCeEEEEccCCchhHHHHHHHhccCCCCcc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNSFSLNRHLARSYNLGNGVN 168 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aG-i~~IvVvt~~~~~~l~~hl~r~y~~~~g~~ 168 (348)
++++.+||||||.|+||+ ...||+|+|++|+ |||+|+++.+..++ +++|+|++++..+.+.+ + ..+
T Consensus 5 ~~~~~~iIlA~G~g~R~~---~~~~K~l~~i~g~-pll~~~i~~l~~~~~~~~ivvv~~~~~~~~~~-~-~~~------- 71 (236)
T 1i52_A 5 HLDVCAVVPAAGFGRRMQ---TECPKQYLSIGNQ-TILEHSVHALLAHPRVKRVVIAISPGDSRFAQ-L-PLA------- 71 (236)
T ss_dssp CCCEEEEEEECCCCGGGC---CSSCGGGSEETTE-EHHHHHHHHHHTSTTEEEEEEEECTTCCSGGG-S-GGG-------
T ss_pred CCceeEEEECCcCccccC---CCCCcceeeECCE-EHHHHHHHHHHhCCCCCeEEEEeCccHHHHHH-H-Hhc-------
Confidence 467899999999999995 4579999999999 99999999999987 89999999987655543 2 122
Q ss_pred cCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-ccc-CHHHHHHHHHhcCCcEEEE
Q 018939 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-YRM-DYTEFLQKHIDTKADITVS 246 (348)
Q Consensus 169 ~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~~~-d~~~ll~~h~~~~aditi~ 246 (348)
+...+.++... .|+.++++.++..+. ..+.++|++||+. .+. .+..+++.|.+.+++. ++
T Consensus 72 -~~~~v~~~~~~-----------~g~~~~i~~al~~~~-----~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~-~~ 133 (236)
T 1i52_A 72 -NHPQITVVDGG-----------DERADSVLAGLKAAG-----DAQWVLVHDAARPCLHQDDLARLLALSETSRTGG-IL 133 (236)
T ss_dssp -GCTTEEEEECC-----------SSHHHHHHHHHHTST-----TCSEEEECCTTCTTCCHHHHHHHHGGGGTCSSCE-EE
T ss_pred -CCCCEEEECCC-----------CCHHHHHHHHHHhcC-----CCCEEEEEcCccccCCHHHHHHHHHHHHhcCCeE-EE
Confidence 11125444311 378899998876652 3578999999994 454 4788888776655333 44
Q ss_pred EEecC
Q 018939 247 CVPMD 251 (348)
Q Consensus 247 ~~~~~ 251 (348)
+.+..
T Consensus 134 ~~~~~ 138 (236)
T 1i52_A 134 AAPVR 138 (236)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 45543
No 45
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A
Probab=99.60 E-value=3.4e-15 Score=131.50 Aligned_cols=123 Identities=15% Similarity=0.295 Sum_probs=90.7
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
+++.+||||||.|+|| ..||+++|++|+ |||+|+++.+.++++++|+|++++..+.+.+++. . ++
T Consensus 4 ~~~~~iIlA~G~~~R~-----g~~K~l~~~~g~-pll~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~------~---~~ 68 (197)
T 2wee_A 4 TQITGVVLAAGRSNRL-----GTPKQLLPYRDT-TVLGATLDVARQAGFDQLILTLGGAASAVRAAMA------L---DG 68 (197)
T ss_dssp SEEEEEEEECCCCTTT-----SSCGGGSEETTE-EHHHHHHHHHHHTTCSEEEEEECTTHHHHHHHSC------C---TT
T ss_pred CceEEEEECCCCcccC-----CCCeEcCeeCCc-cHHHHHHHHHHhcCCCcEEEEeCCCHHHHHHHhc------c---CC
Confidence 4588999999999999 379999999999 9999999999999999999999987655544432 1 11
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-cc-cCHHHHHHHHHhcCCcEEE
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-YR-MDYTEFLQKHIDTKADITV 245 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~~-~d~~~ll~~h~~~~aditi 245 (348)
++++... .+..|++++++.++..+. ...+.++|++||+. .+ ..+..+++. +.++++++
T Consensus 69 ---~~~~~~~--------~~~~g~~~~i~~al~~~~----~~~~~vlv~~~D~P~~~~~~i~~l~~~--~~~~~i~~ 128 (197)
T 2wee_A 69 ---TDVVVVE--------DVERGCAASLRVALARVH----PRATGIVLMLGDQPQVAPATLRRIIDV--GPATEIMV 128 (197)
T ss_dssp ---SEEEECC------------CCHHHHHHHHTTSC----TTEEEEEEEETTCTTCCHHHHHHHHHH--GGGSSEEE
T ss_pred ---CEEEECC--------CcccCHHHHHHHHHHHhc----ccCCeEEEEeCCcCCCCHHHHHHHHhh--cCCCCEEE
Confidence 3444321 123689999999986652 13578999999994 44 457888876 45555543
No 46
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A*
Probab=99.59 E-value=3.5e-14 Score=143.81 Aligned_cols=213 Identities=17% Similarity=0.169 Sum_probs=137.5
Q ss_pred CeeEEEEeCCCCccCCCCCCCCCccceeeC-CcchHHHHHHHHhHhcCCC-----eEEEEcc-CCchhHHHHHH-H--hc
Q 018939 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIG-GNYRLIDIPMSNCINSGFN-----KIFIMTQ-FNSFSLNRHLA-R--SY 161 (348)
Q Consensus 92 ~~~aIILAgG~GtRl~pLT~~~PKpllpIg-Gk~pLId~~l~~l~~aGi~-----~IvVvt~-~~~~~l~~hl~-r--~y 161 (348)
++.+||||||.||||+ ...||||+||+ |+ |++++.++++...|.. .++|.|. +..+.+.+++. + .|
T Consensus 75 k~avViLAGGlGTRLg---~~~PK~llpV~~gk-~fLe~~ie~l~~~~~~~g~~ip~viMtS~~t~e~t~~~f~~~~~~f 150 (505)
T 2oeg_A 75 STVVLKLNGGLGTGMG---LCDAKTLLEVKDGK-TFLDFTALQVQYLRQHCSEHLRFMLMDSFNTSASTKSFLKARYPWL 150 (505)
T ss_dssp TEEEEEEECCCCGGGT---CCSCGGGSEEETTE-EHHHHHHHHHHHHHHHTCTTCEEEEEECHHHHHHHHHHHHHHCHHH
T ss_pred cceEEEEcCCcccccC---CCCCCcccccCCCC-cHHHHHHHHHHHHHHhcCCCcCEEEEeCCCCHHHHHHHHhhhhhcc
Confidence 6899999999999996 68999999999 99 9999999999987533 4555555 44777888886 3 22
Q ss_pred cCC-CCcc-cCCCcEEEEeccc-C-----CCcCCccccCCcHHHHHHHH--HHHHhhccCCCceEEEEcCCcccc-cCHH
Q 018939 162 NLG-NGVN-FGDGFVEVLAATQ-T-----PGEAGKKWFQGTADAVRQFI--WVFEDAKNKNVENVLILSGDHLYR-MDYT 230 (348)
Q Consensus 162 ~~~-~g~~-~~~~~v~vl~~~q-~-----~~~~g~~~~~Gta~Al~~~l--~~i~~~~~~~~e~vLIl~gD~l~~-~d~~ 230 (348)
++. +.+. |.++.+..+..+. . ....-...+.||++++.... ..+++....+.++++|.++|++.. .|+
T Consensus 151 Gl~~~~I~~f~Q~~~P~~~~~~~~~i~~~~~~~~e~~P~G~Gg~~~aL~~sGlL~~l~~~G~e~i~V~N~DNL~~~~D~- 229 (505)
T 2oeg_A 151 YQVFDSEVELMQNQVPKILQDTLEPAAWAENPAYEWAPPGHGDIYTALYGSGKLQELVEQGYRYMFVSNGDNLGATIDK- 229 (505)
T ss_dssp HTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCTTHHHHHHHHTTHHHHHHHTTCCEEEEECTTCTTCCCCH-
T ss_pred CCCccceEEEEEcCEEeEecCCCceeecCCCCccccCcCCchHHHHHHHhcChHHHHHhcCCCEEEEEECCccccccCH-
Confidence 121 0111 2222122111110 0 00001122579999987551 112222224679999999999875 477
Q ss_pred HHHHHHHhcCCcEEEEEEecCCCCCCcceEEEEC------CCCc---------EEEEEeCCCCCCCCCcccccccccCCC
Q 018939 231 EFLQKHIDTKADITVSCVPMDDCRASDYGLMKID------RSGQ---------IIQFAEKPKGPDLKGMQCDTTLLGLSM 295 (348)
Q Consensus 231 ~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~id------~~g~---------V~~~~EKp~~~~~~~~~~~~~~~~~~~ 295 (348)
.++..|.++++++++.+.+.... ...+|++..+ .+|+ |+++.|-|+.... + .++.+
T Consensus 230 ~llg~~~~~~ad~~~~v~~k~~~-d~~~Gvl~~~~~~~~~~dg~~nvEyn~~~llEyse~p~e~~~-~---~~g~~---- 300 (505)
T 2oeg_A 230 RVLAYMEKEKIDFLMEVCRRTES-DKKGGHLARQTVYVKGKDGQPDAEKRVLLLRESAQCPKADME-S---FQDIN---- 300 (505)
T ss_dssp HHHHHHHHHTCSEEEEEEECCTT-CCSSEEEEEEEEEECCSSSCCCEEEEEEEEEEGGGSCGGGHH-H---HHCTT----
T ss_pred HHHHHHHhcCCcEEEEEEEecCC-ccceeEEEEecccccccCCccccccCceeEEEeccCChhhhh-c---ccCcc----
Confidence 89999999999999999987652 2458887762 4577 4544454432110 0 00100
Q ss_pred CCCCCCCceeEeEEEEEeHHHHHHHHHh
Q 018939 296 PDAVKFPYIASMGVYLFRTDVLLNLLRS 323 (348)
Q Consensus 296 ~~~~~~~~~a~~GiYif~~~vl~~ll~~ 323 (348)
.+ .+.|+...+|+-+.|..+++.
T Consensus 301 ----~f-~~~Ninn~~~~l~~l~~~~~~ 323 (505)
T 2oeg_A 301 ----KY-SFFNTNNLWIRLPVLLETMQE 323 (505)
T ss_dssp ----TT-CEEEEEEEEEEHHHHHHHHHH
T ss_pred ----cc-CeeEEEEEEEEHHHHHHHHhh
Confidence 11 247999999999999998875
No 47
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=99.59 E-value=2.9e-14 Score=140.56 Aligned_cols=208 Identities=11% Similarity=0.103 Sum_probs=144.2
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceee---CCcchHHHHHHHHhHh-------------cCCCeEEEEccCCchhHH
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPI---GGNYRLIDIPMSNCIN-------------SGFNKIFIMTQFNSFSLN 154 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpI---gGk~pLId~~l~~l~~-------------aGi~~IvVvt~~~~~~l~ 154 (348)
.++.+||||||.|||| +...||+|+|| .|+ |++++.++.+.+ .++.-+++...+..+.+.
T Consensus 34 gkvavvlLAGG~GTRL---G~~~PK~~~~Vgl~~gk-s~lq~~~e~i~~lq~l~~~~~~~~~~~Ip~~IMtS~~t~e~t~ 109 (405)
T 3oc9_A 34 GKTALITPAGGQGSRL---GFEHPKGMFVLPFEIPK-SIFQMTSERLLRLQELASEYSHQKNVMIHWFLMTNEETIEEIN 109 (405)
T ss_dssp TCEEEEEECCSBCTTT---TCCSBGGGCEECSSSCE-EHHHHHHHHHHHHHHHHHHHHCCSCCCCEEEEEECTTTHHHHH
T ss_pred CceEEEEecCCCcccc---cCCCCCccccccCCCCC-cHHHHHHHHHHHHHHHHhhhccccCCCCCEEEEeCCccHHHHH
Confidence 4689999999999999 66899999999 899 999999988864 466666666677778888
Q ss_pred HHHHHhccCCCCcccCCCcEEEEecccCC-------C-------cCCccccCCcHHHHHHHH--HHHHhhccCCCceEEE
Q 018939 155 RHLARSYNLGNGVNFGDGFVEVLAATQTP-------G-------EAGKKWFQGTADAVRQFI--WVFEDAKNKNVENVLI 218 (348)
Q Consensus 155 ~hl~r~y~~~~g~~~~~~~v~vl~~~q~~-------~-------~~g~~~~~Gta~Al~~~l--~~i~~~~~~~~e~vLI 218 (348)
+++.+.-.|+- ....|.+.. |.. + ..-...+.|+++.+.... ..++++...+.++++|
T Consensus 110 ~~f~~~~~fGl----~~~~i~~f~--Q~~~P~i~~dg~i~l~~~~~i~~~P~GhGgi~~aL~~sG~Ld~l~~~Gieyi~v 183 (405)
T 3oc9_A 110 NYFKEHQYFGL----SSEQIHCFP--QGMLPVVDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVA 183 (405)
T ss_dssp HHHHHTGGGGS----CTTSEEEEE--CCEEECBCTTSCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCEEEE
T ss_pred HHHHhCcccCC----CccceEEEe--eCceeEEecCCCeecCCCCccccccCCChHHHHHHHHCCcHHHHHhcCCEEEEE
Confidence 88864211221 011122211 100 0 000112478888877543 2344444457899999
Q ss_pred EcCCc-ccccCHHHHHHHHHhcCCcEEEEEEecCCCCCCcceEEE-ECCCCcEEEEEeCCCCCCCCCcccccccccCCCC
Q 018939 219 LSGDH-LYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMK-IDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMP 296 (348)
Q Consensus 219 l~gD~-l~~~d~~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~-id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~ 296 (348)
.+.|. |.......++..|.++++++++-+++..+. ...+|++. .|...+|+++.|.|+..+. -..++.
T Consensus 184 ~nvDN~L~~~~Dp~~lg~~~~~~~d~~~kvv~k~~~-dek~Gvl~~~dg~~~vvEysei~~e~e~--~~~~g~------- 253 (405)
T 3oc9_A 184 HNVDNILCKDVDPNMIGYMDLLQSEICIKIVKKGFK-EEKVGVLVKEQERIKVVEYTELTDELNK--QLSNGE------- 253 (405)
T ss_dssp ECTTBTTCCSSCHHHHHHHHHTTCSEEEEEEECCST-TCSCCEEEEETTEEEEECGGGCCTTTTC--BCTTSC-------
T ss_pred EeCCCcccccCCHHHHHHHHHcCCCEEEEEEECCCC-CCccceEEEECCeeEEEEEeeCCHHHhh--cCCCCc-------
Confidence 99999 888888889999999999999999987642 25577766 4555689999998875111 111111
Q ss_pred CCCCCCceeEeEEEEEeHHHHHHHH
Q 018939 297 DAVKFPYIASMGVYLFRTDVLLNLL 321 (348)
Q Consensus 297 ~~~~~~~~a~~GiYif~~~vl~~ll 321 (348)
..-+..|.++++|+.++|.+++
T Consensus 254 ---l~fn~~Ni~~h~fs~~fL~~i~ 275 (405)
T 3oc9_A 254 ---FIYNCGHISINGYSTSFLEKAA 275 (405)
T ss_dssp ---BSSCEEEEEEEEEEHHHHHHHT
T ss_pred ---eeeccceeEeeecCHHHHHHhh
Confidence 1235689999999999999886
No 48
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=99.56 E-value=9.9e-14 Score=127.42 Aligned_cols=171 Identities=20% Similarity=0.274 Sum_probs=120.1
Q ss_pred CeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcC-CCeEEEEccCCc-hhHHHHHHHhccCCCCccc
Q 018939 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNS-FSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 92 ~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aG-i~~IvVvt~~~~-~~l~~hl~r~y~~~~g~~~ 169 (348)
++.+||||||.|+||. ...||+++|++|+ |||+|+++.+.+++ +++|+|+++... +.+.+.+..
T Consensus 7 ~~~aIIlAaG~g~Rmg---~~~~K~l~~l~Gk-pll~~~l~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~---------- 72 (231)
T 3q80_A 7 EVVAIVPAAGSGERLA---VGVPKAFYQLDGQ-TLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILGH---------- 72 (231)
T ss_dssp CEEEEEECCCCCTTTC---SSSCGGGCEETTE-EHHHHHHHHHHHTSCCCEEEEEECGGGHHHHHHHHGG----------
T ss_pred ceEEEEECCCCCccCC---CCCCceEEEECCe-EHHHHHHHHHHhCCCCCeEEEECChHHHHHHHHHhcC----------
Confidence 4889999999999994 4689999999999 99999999999975 899999999875 233333211
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-cccc-CHHHHHHHHHhcCCcEEEEE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRM-DYTEFLQKHIDTKADITVSC 247 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~-d~~~ll~~h~~~~aditi~~ 247 (348)
.+.++... .+..++++.++..+.+. ...+.++|+.||. +... .+..+++.+.+ +.+..+..
T Consensus 73 ---~v~~v~gg-----------~~r~~sv~~gl~~~~~~--~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~-~~~~~i~~ 135 (231)
T 3q80_A 73 ---RAMIVAGG-----------SNRTDTVNLALTVLSGT--AEPEFVLVHDAARALTPPALVARVVEALRD-GYAAVVPV 135 (231)
T ss_dssp ---GCEEEECC-----------SSHHHHHHHHHGGGC-----CCSEEEECCTTCTTCCHHHHHHHHHHHHT-TCSEEEEE
T ss_pred ---CeEEEcCC-----------CchHHHHHHHHHHhhhc--CCCCEEEEEcCCcCCCCHHHHHHHHHHHhh-cCCeEEEE
Confidence 13444311 23468899998776420 1247899999999 4444 47888888765 35677888
Q ss_pred EecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHhh
Q 018939 248 VPMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSS 324 (348)
Q Consensus 248 ~~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~~ 324 (348)
.|+.++ +...+++|+|.++.+. +. -+.+.+ -|+|+.+.|.+.++..
T Consensus 136 ~p~~dt------~~~~~~~g~v~~~~~r---~~---------------------l~~~qT-Pq~F~~~~L~~a~~~~ 181 (231)
T 3q80_A 136 LPLSDT------IKAVDANGVVLGTPER---AG---------------------LRAVQT-PQGFTTDLLLRSYQRG 181 (231)
T ss_dssp ECCSSC------EEEECTTSBEEECCCG---GG---------------------EEEECS-CEEEEHHHHHHHHHHH
T ss_pred EeccCC------EEEEcCCCcEEEecch---hh---------------------eEEEcC-CcEEEHHHHHHHHHHH
Confidence 888763 2224777888765432 11 123444 5999999999887754
No 49
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=99.55 E-value=5.7e-14 Score=142.05 Aligned_cols=210 Identities=18% Similarity=0.270 Sum_probs=141.4
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeC---CcchHHHHHHHHhHhc--------C------CCeEEEEccCCchhH
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIG---GNYRLIDIPMSNCINS--------G------FNKIFIMTQFNSFSL 153 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIg---Gk~pLId~~l~~l~~a--------G------i~~IvVvt~~~~~~l 153 (348)
.++.+||||||.|||| +...||+|+||+ |+ |++++.++.+.+. | +..+++.+.+..+.+
T Consensus 102 gkvavvlLaGG~GTRL---g~~~PK~l~~v~l~~gk-~~l~~~~e~l~~~~~~~~~~~G~~~~~~ip~~ImtS~~t~~~t 177 (486)
T 2yqc_A 102 GEVAVLLMAGGQGTRL---GSSAPKGCFNIELPSQK-SLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSGPTRNAT 177 (486)
T ss_dssp TCEEEEEEEESBCGGG---TCSSBGGGCBCCCTTCC-BHHHHHHHHHHHHHHHHHHHHTCSSCCCCEEEEEECGGGHHHH
T ss_pred CCeEEEEEcCCccccC---CCCCCCccceecCCCCC-cHHHHHHHHHHHHHHHhhhhcCCCcCCccCEEEEECCCCHHHH
Confidence 4699999999999999 678999999999 99 9999999999986 6 777788888888888
Q ss_pred HHHHHHh-ccCCCCcccCCCcEEEEecccCC----CcCC-----------ccccCCcHHHHHHHHH--HHHhhccCCCce
Q 018939 154 NRHLARS-YNLGNGVNFGDGFVEVLAATQTP----GEAG-----------KKWFQGTADAVRQFIW--VFEDAKNKNVEN 215 (348)
Q Consensus 154 ~~hl~r~-y~~~~g~~~~~~~v~vl~~~q~~----~~~g-----------~~~~~Gta~Al~~~l~--~i~~~~~~~~e~ 215 (348)
.+++.+. | |+ + ....|.+. .|.. ..+| ...+.|+++.+..... .++++...+.++
T Consensus 178 ~~~~~~~~~-fg--l--~~~~v~~f--~Q~~~P~i~~dg~~i~l~~~~~i~~~P~G~Ggi~~aL~~sG~Ld~l~~~G~~y 250 (486)
T 2yqc_A 178 ESFFIENNY-FG--L--NSHQVIFF--NQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKH 250 (486)
T ss_dssp HHHHHHTGG-GG--S--CGGGEEEE--ECCEEECBCTTSSSBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHHTCCE
T ss_pred HHHHhhccc-cC--C--CcceEEEE--ecccceeEcCCCCccccCCCCccccCcCCchHHHHHHHHcCcHHHHHhcCCeE
Confidence 8888642 2 22 1 11122211 1110 0011 0125799998865532 244444458899
Q ss_pred EEEEcCCcccc--cCHHHHHHHHHhcCCcEEEEEEecCCCCCCcceEEEEC-CCC--cEEEEEeCCCCCCCCCcccc-cc
Q 018939 216 VLILSGDHLYR--MDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKID-RSG--QIIQFAEKPKGPDLKGMQCD-TT 289 (348)
Q Consensus 216 vLIl~gD~l~~--~d~~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~id-~~g--~V~~~~EKp~~~~~~~~~~~-~~ 289 (348)
+.|.+.|.+.- .| ..++..|.++++++++.+++..+. ...+|++... ++| +|+++.|+|...... ..-+ .+
T Consensus 251 i~v~~vDN~l~~~~D-p~~lg~~~~~~~~~~~~vv~k~~~-~e~~Gvl~~~~~dg~~~vvEy~E~~~~~~~~-~~~~~~~ 327 (486)
T 2yqc_A 251 IHMYCVDNCLVKVAD-PIFIGFAIAKKFDLATKVVRKRDA-NESVGLIVLDQDNQKPCVIEYSEISQELANK-KDPQDSS 327 (486)
T ss_dssp EEEEETTBTTCCTTC-HHHHHHHHHHTCSEEEEEEECCST-TCCCCEEEEETTTTEEEEECGGGSCHHHHHC-EETTEEE
T ss_pred EEEECCCCceeeccC-HHHHHHHHHcCCCEEEEEEEcCCC-CCceeEEEEEecCCCEEEEEEecCCHHHhhc-ccccccc
Confidence 99999998543 34 358899999999999999887432 2457876643 134 588888988531100 0000 00
Q ss_pred cccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHh
Q 018939 290 LLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS 323 (348)
Q Consensus 290 ~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~ 323 (348)
. ..-+.+|+|+|+|+.++|..++..
T Consensus 328 ~---------~~~~~~Ni~~~~~~l~~L~~~l~~ 352 (486)
T 2yqc_A 328 K---------LFLRAANIVNHYYSVEFLNKMIPK 352 (486)
T ss_dssp E---------ESSCEEEEEEEEEEHHHHHHHHHH
T ss_pred c---------ccccceeEEEEEEeHHHHHHHHHh
Confidence 0 012578999999999999985554
No 50
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=99.50 E-value=1.3e-12 Score=118.40 Aligned_cols=169 Identities=18% Similarity=0.314 Sum_probs=111.5
Q ss_pred CeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcC-CCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSG-FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 92 ~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aG-i~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
.+.+||||||.|+||+ ...||+|+|++|+ |||+|+++.+.+++ +++|+|++++....+ +. .+ +. ++
T Consensus 13 ~~~aiILAaG~s~Rm~---~~~~K~l~~i~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~---~~-~~-~~----~~ 79 (234)
T 1vpa_A 13 MNVAILLAAGKGERMS---ENVPKQFLEIEGR-MLFEYPLSTFLKSEAIDGVVIVTRREWFEV---VE-KR-VF----HE 79 (234)
T ss_dssp CEEEEEEECCCCGGGC---CSSCGGGCEETTE-ETTHHHHHHHHHCTTCSEEEEEECGGGHHH---HH-TT-CC----CT
T ss_pred cCeEEEEcCcchhhcC---CCCCceEEEECCe-EHHHHHHHHHHcCCCCCeEEEEEChHHHHH---HH-HH-hc----cC
Confidence 4889999999999995 3569999999999 99999999999998 899999998875432 22 22 11 11
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-cccc-CHHHHHHHHHhcCCcEEEEEE
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRM-DYTEFLQKHIDTKADITVSCV 248 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~-d~~~ll~~h~~~~aditi~~~ 248 (348)
. .+.... .| .+..++++.++..+++. ..+.+++++||+ +... .+..+++.+.+.+ ..+++.
T Consensus 80 ~-~~~~~~-------gg----~~~~~sv~~al~~~~~~---~~~~vlv~~~D~Pli~~~~i~~l~~~~~~~~--~~i~~~ 142 (234)
T 1vpa_A 80 K-VLGIVE-------GG----DTRSQSVRSALEFLEKF---SPSYVLVHDSARPFLRKKHVSEVLRRARETG--AATLAL 142 (234)
T ss_dssp T-EEEEEE-------CC----SSHHHHHHHHHHHHGGG---CCSEEEEEETTSCCCCHHHHHHHHHHHHHHS--EEEEEE
T ss_pred C-ceEEeC-------CC----CcHHHHHHHHHHHhhhc---CCCEEEEecCcccCCCHHHHHHHHHHHHhcC--CEEEEE
Confidence 1 122111 00 23778899988777421 246889999999 4454 5888998887654 334455
Q ss_pred ecCCCCCCcceEEEECCCCcEEEEEeCCCCCCCCCcccccccccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHh
Q 018939 249 PMDDCRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS 323 (348)
Q Consensus 249 ~~~~~~~~~~g~v~id~~g~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~ 323 (348)
+..+ ++..++++| | .+.++.. .+..-..++|+...|..++..
T Consensus 143 ~~~~------~~~~~~~~g-v-~~~~r~~-------------------------~~~~~~p~~f~~~~l~~~~~~ 184 (234)
T 1vpa_A 143 KNSD------ALVRVENDR-I-EYIPRKG-------------------------VYRILTPQAFSYEILKKAHEN 184 (234)
T ss_dssp ECCS------EEEEEETTE-E-EEECCTT-------------------------EEEEEEEEEEEHHHHHHHHTT
T ss_pred ecCC------cEEEECCCC-c-ccCChhH-------------------------eeeecCCccccHHHHHHHHHh
Confidence 5533 123345667 6 6654310 112224468899888776643
No 51
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus}
Probab=99.50 E-value=3.6e-14 Score=126.42 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=87.7
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
|++.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +++|++++..+.+. .+ +. .+
T Consensus 1 M~~~~iIlAgG~g~Rmg-----~~K~l~~i~g~-pll~~~l~~l~~~---~ivvv~~~~~~~~~-----~~-~~----~~ 61 (197)
T 3d5n_A 1 MNIGVIILAAGEGKRFG-----GDKLLAKIDNT-PIIMRTIRIYGDL---EKIIIVGKYVNEML-----PL-LM----DQ 61 (197)
T ss_dssp CCEEEEEECSCCTTCCC-----SSGGGSBSSSS-BHHHHHHHHTTTS---BCCEEECTTHHHHG-----GG-CT----TS
T ss_pred CceEEEEECCcCcccCC-----CCeeeCEeCce-EHHHHHHHHHHhC---CEEEEECCCHHHHH-----HH-hc----CC
Confidence 35889999999999995 39999999999 9999999999877 88899888643332 22 11 11
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-cccc-CHHHHHHHHHhcCCcEEEEE
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRM-DYTEFLQKHIDTKADITVSC 247 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~-d~~~ll~~h~~~~aditi~~ 247 (348)
+ ++... .|..|++++++.++..+. ..+.++|++||+ +++. .+..+++.+ +.++++++.+
T Consensus 62 ---~-~v~~~--------~~~~G~~~si~~al~~~~-----~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~~ 122 (197)
T 3d5n_A 62 ---I-VIYNP--------FWNEGISTSLKLGLRFFK-----DYDAVLVALGDMPFVTKEDVNKIINTF-KPNCKAVIPT 122 (197)
T ss_dssp ---C-EEECT--------TGGGCHHHHHHHHHHHTT-----TSSEEEEEETTCCCSCHHHHHHHHHTC-CTTCSEEEEE
T ss_pred ---E-EEECC--------CCCCCHHHHHHHHHHhhc-----cCCcEEEEeCCccccCHHHHHHHHHHh-cCCCcEEEEE
Confidence 3 33321 133699999999988774 247999999999 4454 477888877 5566654443
No 52
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8}
Probab=99.48 E-value=1.3e-12 Score=119.42 Aligned_cols=135 Identities=14% Similarity=0.153 Sum_probs=87.9
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
|++.+||||||.|+||++ . ||+|+|++|+ |||+|+++. ..++++|+|+++.. +.+ + ..
T Consensus 24 M~~~aiILAgG~s~Rm~~---~-~K~l~~i~gk-pli~~~l~~--~~~~~~ivvv~~~~---~~~-~------~~----- 81 (236)
T 2px7_A 24 MEVSVLIPAAGNGLRLGR---G-PKAFLQVGGR-TLLEWTLAA--FRDAAEVLVALPPG---AEP-P------KG----- 81 (236)
T ss_dssp CCCEEEEECCC----------C-CGGGCBCSSS-BHHHHHHHH--TTTCSEEEEEECTT---CCC-C------TT-----
T ss_pred CceEEEEEcCCCCccCCC---C-CCeEEEECCE-EHHHHHHHh--cCCCCeEEEEeCHH---HHH-h------hc-----
Confidence 457799999999999964 3 9999999999 999999999 67899999999861 111 1 10
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-cccc-CHHHHHHHHHhcCCcEEEEEE
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRM-DYTEFLQKHIDTKADITVSCV 248 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~-d~~~ll~~h~~~~aditi~~~ 248 (348)
..+.++.. . .|+.++++.++..++ .+.++|++||+ +++. .+..+++.+.+.+ ..+.+.
T Consensus 82 -~~v~~~~~--~---------~~~~~~i~~al~~~~------~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~--~~i~~~ 141 (236)
T 2px7_A 82 -LGAVFLEG--G---------ATRQASVARLLEAAS------LPLVLVHDVARPFVSRGLVARVLEAAQRSG--AAVPVL 141 (236)
T ss_dssp -CSCEEEEC--C---------SSHHHHHHHHHHHCC------SSEEEECCTTCCCCCHHHHHHHHHHHHHHS--EEEEEE
T ss_pred -CCcEEEeC--C---------CchHHHHHHHHHHcC------CCeEEEecCccccCCHHHHHHHHHHHHhcC--CeEEEE
Confidence 11344321 1 367889998887652 57899999998 4454 4888888887654 344445
Q ss_pred ecCCCCCCcceEEEECCCCcEEEEEe
Q 018939 249 PMDDCRASDYGLMKIDRSGQIIQFAE 274 (348)
Q Consensus 249 ~~~~~~~~~~g~v~id~~g~V~~~~E 274 (348)
+..+. . ...+ +|++..+.+
T Consensus 142 ~~~~~----~--~~~~-~G~v~~~~~ 160 (236)
T 2px7_A 142 PVPDT----L--MAPE-GEAYGRVVP 160 (236)
T ss_dssp ECCSE----E--EEEC-SSSCEEEEC
T ss_pred ecCCc----E--EEec-CCeEEecCC
Confidence 54331 1 1124 788876655
No 53
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A*
Probab=99.47 E-value=2.4e-13 Score=121.61 Aligned_cols=119 Identities=13% Similarity=0.177 Sum_probs=88.0
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCccc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNF 169 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~ 169 (348)
|+++.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. ++++|+|++++..+.+ . .+
T Consensus 4 mm~~~~iILAgG~s~Rmg----~~~K~ll~i~G~-pli~~~l~~l~~-~~~~ivvv~~~~~~~~----~-~~-------- 64 (201)
T 1e5k_A 4 MTTITGVVLAGGKARRMG----GVDKGLLELNGK-PLWQHVADALMT-QLSHVVVNANRHQEIY----Q-AS-------- 64 (201)
T ss_dssp CCSEEEEEECCCCCSSSC----SSCGGGSEETTE-EHHHHHHHHHHH-HCSCEEEECSSSHHHH----H-TT--------
T ss_pred CCcceEEEEcCCCCCcCC----CCCCceeeECce-eHHHHHHHHHHh-hCCEEEEEcCCcHHHH----h-hc--------
Confidence 567999999999999995 379999999999 999999999985 5899999998875322 1 11
Q ss_pred CCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-ccccC-HHHHHHHHHhcCCcEEE
Q 018939 170 GDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHIDTKADITV 245 (348)
Q Consensus 170 ~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~d-~~~ll~~h~~~~aditi 245 (348)
+ +.++...... ..|++++++.++..+ ..+.++|++||+ ++..+ +..+++. ..++++++
T Consensus 65 ~---~~~v~~~~~~-------~~G~~~si~~~l~~~------~~~~vlv~~~D~P~i~~~~i~~l~~~--~~~~~~~~ 124 (201)
T 1e5k_A 65 G---LKVIEDSLAD-------YPGPLAGMLSVMQQE------AGEWFLFCPCDTPYIPPDLAARLNHQ--RKDAPVVW 124 (201)
T ss_dssp S---CCEECCCTTC-------CCSHHHHHHHHHHHC------CSSEEEEEETTCTTCCTTHHHHHHHT--CTTCSEEE
T ss_pred C---CeEEecCCCC-------CCCHHHHHHHHHHhC------CCCcEEEEeCCcCcCCHHHHHHHHhh--cCCCCEEE
Confidence 1 3343322110 158999999998766 358999999999 45554 6777765 44555544
No 54
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus}
Probab=99.36 E-value=8.9e-13 Score=117.72 Aligned_cols=105 Identities=19% Similarity=0.203 Sum_probs=80.5
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccC
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFG 170 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~ 170 (348)
+++.+||||||.|+||+ .||+|+|++|+ |||+|+++.+..+ +++|+|++++... + .+ . +
T Consensus 13 ~~~~~iILA~G~g~Rmg-----~~K~ll~i~g~-pll~~~l~~l~~~-~~~i~vv~~~~~~---~----~~--~-~---- 71 (201)
T 2e8b_A 13 KVNTCYVLAGGKSKRFG-----EDKLLYEIKGK-KVIERVYETAKSV-FKEVYIVAKDREK---F----SF--L-N---- 71 (201)
T ss_dssp SCCEEEEEEESSCCCCS-----TTHHHHHHHHH-HHHHHHHHHHHTT-CSEEEEEESCSGG---G----GG--G-T----
T ss_pred cCceEEEECCCCCccCC-----CCcccceECce-EHHHHHHHHHHHh-CCEEEEEeCcHHH---h----hc--C-C----
Confidence 35789999999999995 79999999999 9999999999988 9999999988653 1 12 1 1
Q ss_pred CCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCccc-ccC-HHH-HH
Q 018939 171 DGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLY-RMD-YTE-FL 233 (348)
Q Consensus 171 ~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~-~~d-~~~-ll 233 (348)
++++.... +..|++++++.++..+. .+.++|++||+.+ +.+ +.. ++
T Consensus 72 ---~~~v~~~~--------~~~g~~~~i~~al~~~~------~~~~lv~~~D~P~i~~~~i~~~l~ 120 (201)
T 2e8b_A 72 ---APVVLDEF--------EESASIIGLYTALKHAK------EENVFVLSGDLPLMKKETVLYVLE 120 (201)
T ss_dssp ---CCEEECCC--------SSCCHHHHHHHHHHHCS------SSEEEEEETTCTTCCHHHHHHHHH
T ss_pred ---ceEEecCC--------CCCCcHHHHHHHHHHcC------CCCEEEEeCCcCcCCHHHHHHHHh
Confidence 33443221 23699999999987662 5899999999954 444 455 54
No 55
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus}
Probab=99.35 E-value=6.7e-12 Score=113.28 Aligned_cols=117 Identities=15% Similarity=0.211 Sum_probs=86.1
Q ss_pred eeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCC
Q 018939 93 VAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDG 172 (348)
Q Consensus 93 ~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~ 172 (348)
|.+||||||.|+||. .||+++|++|+ |||+|+++.+..+ +|+|+++. .+.+ ..+.+.+ +
T Consensus 1 m~aiILAgG~s~Rmg-----~~K~ll~~~G~-pli~~~~~~l~~~---~vvvv~~~-~~~~-~~~~~~~--------~-- 59 (208)
T 3ngw_A 1 MKVAVLVGGVGRRIG-----MEKTEVMLCGK-KLIEWVLEKYSPF---QTVFVCRD-EKQA-EKLSSRY--------E-- 59 (208)
T ss_dssp CEEEEECCCCCTTTT-----SCGGGCEETTE-EHHHHHHHHHTTS---EEEEECSS-HHHH-HHHHTTS--------C--
T ss_pred CEEEEECCCchhhCC-----CCCcccEECCe-eHHHHHHHHhcCC---CEEEEECC-HHHH-HHHHHhc--------C--
Confidence 679999999999994 79999999999 9999999999876 89999864 2222 3333222 1
Q ss_pred cEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCc-ccccC-HHHHHHHHHhcCCcEEEEE
Q 018939 173 FVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDH-LYRMD-YTEFLQKHIDTKADITVSC 247 (348)
Q Consensus 173 ~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~-l~~~d-~~~ll~~h~~~~aditi~~ 247 (348)
+.++.+... -.|...+++.++..+ .+.+ |+.||+ +.+.+ +..+++.+.+.+.++++..
T Consensus 60 -~~~v~d~~~--------~~G~~~si~~gl~~~-------~~~v-v~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~~ 119 (208)
T 3ngw_A 60 -AEFIWDLHK--------GVGSIAGIHAALRHF-------GSCV-VAAIDMPFVKPEVLEHLYKEGEKAGCDALIPK 119 (208)
T ss_dssp -SCEECCTTC--------CCSHHHHHHHHHHHH-------SSEE-EEETTCTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred -CeEEecCCC--------CCChHHHHHHHHHHc-------CCCE-EEECCccCCCHHHHHHHHHHhhcCCCCEEEEc
Confidence 334432221 157889999998766 2688 999999 44554 7788888776677776654
No 56
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=99.25 E-value=1.3e-11 Score=120.94 Aligned_cols=125 Identities=15% Similarity=0.237 Sum_probs=90.5
Q ss_pred CCCeeEEEEeCCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHh-cCCCeEEEEccCCchhHHHHHHHhccCCCCcc
Q 018939 90 PKNVAAIILGGGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCIN-SGFNKIFIMTQFNSFSLNRHLARSYNLGNGVN 168 (348)
Q Consensus 90 ~~~~~aIILAgG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~-aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~ 168 (348)
||++.+||||||.|+||. ...||+|+|++|+ |||+|+++.+.+ .++++|+|+++ ..+. +. .+ +. +
T Consensus 1 Mmki~aIILAaG~ssRmg---~~~pK~ll~l~Gk-PLi~~~l~~l~~~~~~~~IvVvt~-~~~~----i~-~~-~~-~-- 66 (371)
T 1w55_A 1 MSEMSLIMLAAGNSTRFN---TKVKKQFLRLGND-PLWLYATKNLSSFYPFKKIVVTSS-NITY----MK-KF-TK-N-- 66 (371)
T ss_dssp -CCEEEEEECCSCCTTTC---SSSCGGGCEEBTE-EHHHHHHHHHHTTSCCSCEEEEES-CHHH----HH-TT-CS-S--
T ss_pred CCccEEEEECCCCCccCC---CCCCcceEEECCe-EHHHHHHHHHHccCCCCeEEEEcC-CHHH----HH-HH-hC-C--
Confidence 356899999999999995 3579999999999 999999999998 58999999998 4322 22 22 11 1
Q ss_pred cCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-ccc-CHHHHHHHHHhcCCcEEEE
Q 018939 169 FGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-YRM-DYTEFLQKHIDTKADITVS 246 (348)
Q Consensus 169 ~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~~~-d~~~ll~~h~~~~aditi~ 246 (348)
+.++.. ..|..++++.++..+ ..+.++|++||+. ... .+..+++.+.+. +..+.
T Consensus 67 -----v~~v~~-----------g~g~~~sv~~aL~~l------~~d~vlv~~~D~Pli~~~~i~~li~~~~~~--~a~i~ 122 (371)
T 1w55_A 67 -----YEFIEG-----------GDTRAESLKKALELI------DSEFVMVSDVARVLVSKNLFDRLIENLDKA--DCITP 122 (371)
T ss_dssp -----SEEEEC-----------CSSHHHHHHHHHTTC------CSSEEEEEETTCTTCCHHHHHHHHTTGGGC--SEEEE
T ss_pred -----CEEEeC-----------CCChHHHHHHHHHhc------CCCeEEEEeCCcccCCHHHHHHHHHHHHhc--CCEEE
Confidence 344321 146889999987655 2589999999994 444 478888877654 34555
Q ss_pred EEecCC
Q 018939 247 CVPMDD 252 (348)
Q Consensus 247 ~~~~~~ 252 (348)
+.+..+
T Consensus 123 ~~~~~d 128 (371)
T 1w55_A 123 ALKVAD 128 (371)
T ss_dssp EECCCS
T ss_pred EEEeec
Confidence 566543
No 57
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A
Probab=98.63 E-value=4.4e-07 Score=91.84 Aligned_cols=216 Identities=16% Similarity=0.246 Sum_probs=126.3
Q ss_pred CCCCCeeEEEEeCCCCccCCCCCCCCCccceeeC-CcchHHHHHHHHhHhc----CC-CeEEEEccCCc-hhHHHHHHHh
Q 018939 88 ADPKNVAAIILGGGAGTRLFPLTNRRAKPAVPIG-GNYRLIDIPMSNCINS----GF-NKIFIMTQFNS-FSLNRHLARS 160 (348)
Q Consensus 88 ~~~~~~~aIILAgG~GtRl~pLT~~~PKpllpIg-Gk~pLId~~l~~l~~a----Gi-~~IvVvt~~~~-~~l~~hl~r~ 160 (348)
..-.++.+|+||||.|||| ....||.++|+. |+ +++++.++++... |+ -..+|.|++.. +...+++. .
T Consensus 123 ~~l~kvavvlLaGGlGTRL---G~~~PK~~i~V~sgk-tflql~~eqI~~l~~~~g~~IPl~IMTS~~T~~~T~~~f~-k 197 (528)
T 3r3i_A 123 SVLNKLVVVKLNGGLGTSM---GCKGPKSLIGVRNEN-TFLDLTVQQIEHLNKTYNTDVPLVLMNSFNTDEDTKKILQ-K 197 (528)
T ss_dssp TTCTTEEEEEECCCBCTTT---TCSSBGGGSEEETTE-EHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHSSCG-G
T ss_pred hhcCceEEEEeCCCCcccc---CCCCCccceecCCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEeccchhHHHHHHHH-h
Confidence 3456899999999999999 668999999997 67 9999999988875 43 35677777664 44555553 3
Q ss_pred cc-CCCCcc-cCCCcEEEEec-ccCCC--------cCCccc-cCCcHHHHHH--HHHHHHhhccCCCceEEEEcCCcc-c
Q 018939 161 YN-LGNGVN-FGDGFVEVLAA-TQTPG--------EAGKKW-FQGTADAVRQ--FIWVFEDAKNKNVENVLILSGDHL-Y 225 (348)
Q Consensus 161 y~-~~~g~~-~~~~~v~vl~~-~q~~~--------~~g~~~-~~Gta~Al~~--~l~~i~~~~~~~~e~vLIl~gD~l-~ 225 (348)
++ |+..+. |.++.+-.+.. ..... .....| +.|.++-... ....++++...+.+++.|.+.|.+ .
T Consensus 198 ~~~fg~~V~~F~Q~~~P~i~~dg~l~l~~~~~~~~~~~~~~~P~GhGdiy~aL~~sGlLd~l~~~Gieyi~v~nvDNlga 277 (528)
T 3r3i_A 198 YNHCRVKIYTFNQSRYPRINKESLLPVAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDNLGA 277 (528)
T ss_dssp GTTSSCCEEEEECCCBCCEETTTCCCC-------------CBCCBTTTHHHHHHHHSHHHHHHHTTCCEEEEEETTBTTC
T ss_pred cCccCCCeEEEEeCCeeeEecCCceecccccccCCCcceeeCcCCChHHHHHHHHCChHHHHHhcCCEEEEEEccCCccc
Confidence 31 221111 11111100100 00000 011123 3555543332 223566666678999999999996 4
Q ss_pred ccCHHHHHHHHHhc----CCcEEEEEEecCCCCCCcceEEEECCCC--cEEEEEeCCCCCCCCCcccccccccCCCCCCC
Q 018939 226 RMDYTEFLQKHIDT----KADITVSCVPMDDCRASDYGLMKIDRSG--QIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAV 299 (348)
Q Consensus 226 ~~d~~~ll~~h~~~----~aditi~~~~~~~~~~~~~g~v~id~~g--~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~ 299 (348)
..|. .++..+.+. ++++.+-+.+-.... ..-|++.. .+| +|+++.|-|+..... .++.+
T Consensus 278 ~vDp-~~Lg~~~~~~~~~~~d~~~kVv~Kt~~d-ek~Gvl~~-~dGk~~vvEyseip~e~~~~----~~g~~-------- 342 (528)
T 3r3i_A 278 TVDL-YILNHLMNPPNGKRCEFVMEVTNKTRAD-VKGGTLTQ-YEGKLRLVEIAQVPKAHVDE----FKSVS-------- 342 (528)
T ss_dssp CCCH-HHHHHHSSCSSSCCCSEEEEECCCCTTC-CSSCEEEC-SSSSCEEECTTSSCGGGTTT----SSCSS--------
T ss_pred ccCH-HHHHHHHhcccccCCcEEEEEeEccccC-CcccEEEE-ECCeEEEEEecCCChhHhhc----cCCcc--------
Confidence 4553 367777776 889888776644321 22354432 344 556665555332110 01111
Q ss_pred CCCceeEeEEEEEeHHHHHHHHHhh
Q 018939 300 KFPYIASMGVYLFRTDVLLNLLRSS 324 (348)
Q Consensus 300 ~~~~~a~~GiYif~~~vl~~ll~~~ 324 (348)
.+ .+.|+...+|+-+.|..+++..
T Consensus 343 ~f-~~~Ntnnlw~~L~~L~~v~~~~ 366 (528)
T 3r3i_A 343 KF-KIFNTNNLWISLAAVKRLQEQN 366 (528)
T ss_dssp SC-CCCEEEEEEEEHHHHHHHHHTT
T ss_pred cC-CeEEEEEEEEEHHHHHHHHHhC
Confidence 12 2479999999999999988753
No 58
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei}
Probab=98.51 E-value=3e-06 Score=85.12 Aligned_cols=214 Identities=14% Similarity=0.200 Sum_probs=131.7
Q ss_pred CCeeEEEEeCCCCccCCCCCCCCCccceee-CCcchHHHHHHHHhHhc----CC-CeEEEEccCCc-hhHHHHHHHhcc-
Q 018939 91 KNVAAIILGGGAGTRLFPLTNRRAKPAVPI-GGNYRLIDIPMSNCINS----GF-NKIFIMTQFNS-FSLNRHLARSYN- 162 (348)
Q Consensus 91 ~~~~aIILAgG~GtRl~pLT~~~PKpllpI-gGk~pLId~~l~~l~~a----Gi-~~IvVvt~~~~-~~l~~hl~r~y~- 162 (348)
.++..|+||||.|||| ....||.++|| .|+ ++++..++++... ++ -.++|.|+++. ++..+++. .++
T Consensus 75 ~kvavvlLaGGlGTRL---G~~~pKg~~~v~sgk-sflql~~eqI~~l~~~~~~~iPl~IMTS~~T~~~T~~~~~-k~~~ 149 (484)
T 3gue_A 75 RQAVVLKLNGGLGTGM---GLNGPKSLLQVKNGQ-TFLDFTALQLEHFRQVRNCNVPFMLMNSFSTSGETKNFLR-KYPT 149 (484)
T ss_dssp TTEEEEEEECCCCGGG---TCSSCGGGSEEETTE-EHHHHHHHHHHHHHHHHTCCCCEEEEECTTTHHHHHHHGG-GCHH
T ss_pred hhcEEEEEcCCccccc---CCCCCceeeecCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCcchhHHHHHHHH-hCcc
Confidence 3799999999999999 67789999999 566 8999999988773 33 35678887765 45666664 332
Q ss_pred CC----CCcccCCCcEEEEecccC-C----CcCCccc-cCCcHHHHHHH--HHHHHhhccCCCceEEEEcCCcccccCHH
Q 018939 163 LG----NGVNFGDGFVEVLAATQT-P----GEAGKKW-FQGTADAVRQF--IWVFEDAKNKNVENVLILSGDHLYRMDYT 230 (348)
Q Consensus 163 ~~----~g~~~~~~~v~vl~~~q~-~----~~~g~~~-~~Gta~Al~~~--l~~i~~~~~~~~e~vLIl~gD~l~~~d~~ 230 (348)
|+ +-..|.++.+-.+..+.. + ......| +.|.++-.... ...++++...+.+++.|.+.|.+...-=.
T Consensus 150 Fgl~~~~v~~F~Q~~~P~i~~dg~~~i~~~~~~~i~~~P~GhGdiy~aL~~sGiLd~l~~~Gieyi~v~~vDNL~a~~Dp 229 (484)
T 3gue_A 150 LYEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTCEWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDNLGATLDV 229 (484)
T ss_dssp HHTTCCCCCEEECCCEECEETTTCCBCCCTTCGGGGEECCCGGGHHHHHHHHSHHHHHHHTTCCEEEEEETTCTTCCCCH
T ss_pred cCCCccceEEEEeCceeeEecCCCceeecCCCCceeeccCCchHHHHHHHhCCcHHHHHHcCCEEEEEEcCCCcccccCH
Confidence 22 112222322322221110 0 0011223 35666644432 23566666678999999999997664335
Q ss_pred HHHHHHHhcCCcEEEEEEecCCCCCCcce-EEEE--------CCCC--cEEEEEeCCCCCCCCCcccccccccCCCCCCC
Q 018939 231 EFLQKHIDTKADITVSCVPMDDCRASDYG-LMKI--------DRSG--QIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAV 299 (348)
Q Consensus 231 ~ll~~h~~~~aditi~~~~~~~~~~~~~g-~v~i--------d~~g--~V~~~~EKp~~~~~~~~~~~~~~~~~~~~~~~ 299 (348)
.++..+.++++++.+-+++-.... ..-| ++.. ..+| +|+++.|-|+... .+. ....
T Consensus 230 ~~lG~~~~~~~d~~~kvv~Kt~~d-ekgG~l~~~~~~~~~~~~~dG~~~vvEyseip~e~~-~~f-----------~~~~ 296 (484)
T 3gue_A 230 RLLDYMHEKQLGFLMEVCRRTESD-KKGGHLAYKDVIDETTGQTRRRFVLRESAQCPKEDE-DSF-----------QNIA 296 (484)
T ss_dssp HHHHHHHHTTCSEEEEEEECCTTC-CSSEEEEEEC--------CCCEEEEEEGGGSCGGGH-HHH-----------TCTT
T ss_pred HHHHHHHhcCCCEEEEEEECCCCC-CceeEEEEEccccccccCCCCCEEEEEeccCCHHHH-hhh-----------cCCC
Confidence 578888999999999888865432 2345 3443 1244 5566666554221 000 0011
Q ss_pred CCCceeEeEEEEEeHHHHHHHHHh
Q 018939 300 KFPYIASMGVYLFRTDVLLNLLRS 323 (348)
Q Consensus 300 ~~~~~a~~GiYif~~~vl~~ll~~ 323 (348)
.. -..+++..+++-..+..+++.
T Consensus 297 g~-~~FNtnNi~~~l~~l~~~l~~ 319 (484)
T 3gue_A 297 KH-CFFNTNNIWINLMELKKMMDE 319 (484)
T ss_dssp TS-CEEEEEEEEEEHHHHHHHHHH
T ss_pred Cc-eEeEeeeEEEEHHHHHHHHHh
Confidence 12 245999999999999888875
No 59
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A*
Probab=98.41 E-value=1.6e-05 Score=81.91 Aligned_cols=221 Identities=15% Similarity=0.188 Sum_probs=127.2
Q ss_pred CeeEEEEeCCCCccCCCCCCCCCccceeeC---CcchHHHHHHHHhHh-cCC-CeEEEEccCCc-hhHHHHHHHhccCCC
Q 018939 92 NVAAIILGGGAGTRLFPLTNRRAKPAVPIG---GNYRLIDIPMSNCIN-SGF-NKIFIMTQFNS-FSLNRHLARSYNLGN 165 (348)
Q Consensus 92 ~~~aIILAgG~GtRl~pLT~~~PKpllpIg---Gk~pLId~~l~~l~~-aGi-~~IvVvt~~~~-~~l~~hl~r~y~~~~ 165 (348)
++..|+||||.|||| ....||.++|++ |+ +++++.++++.+ .|. -.++|.|++.. +...++|.+ |.+..
T Consensus 114 kvavvllaGGlGTRL---G~~~pK~~lpv~~~s~k-s~lql~~e~i~~~~g~~iPl~IMTS~~T~~~T~~~~~~-fgl~~ 188 (630)
T 3ogz_A 114 KTVFVLVAGGLGERL---GYSSIKVSLPVETATNT-TYLAYYLRWAQRVGGKEVPFVIMTSDDTHDRTLQLLRE-LQLEV 188 (630)
T ss_dssp GEEEEEECCCEEGGG---TEEEEGGGSBSCTTTCC-BHHHHHHHHHHHHHCTTCCEEEEECTTTHHHHHHHHHH-TTCCC
T ss_pred hceEEEecCCccccc---CCCCCcccceecCCCCC-cHHHHHHHHHHHHhCCCCcEEEEecccchHHHHHHHHH-hCCCc
Confidence 689999999999999 668999999997 88 899999999987 353 35677777664 556677754 64321
Q ss_pred C-c-ccCCCcEEEEecccC--C--CcCCccc-cCCcHHHHHHHHH--------------------HHHhhccCCCceEEE
Q 018939 166 G-V-NFGDGFVEVLAATQT--P--GEAGKKW-FQGTADAVRQFIW--------------------VFEDAKNKNVENVLI 218 (348)
Q Consensus 166 g-~-~~~~~~v~vl~~~q~--~--~~~g~~~-~~Gta~Al~~~l~--------------------~i~~~~~~~~e~vLI 218 (348)
. + .|.++.+-.+..... . ......| +.|.++-...... .++++...+.+++.|
T Consensus 189 ~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lLd~l~~~Gieyi~v 268 (630)
T 3ogz_A 189 PNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLVNDWLAAGYESIVF 268 (630)
T ss_dssp TTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHHHHHHHTTCCEEEE
T ss_pred ccEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHHHHHHHcCCEEEEE
Confidence 1 1 112222222211100 0 0011122 4566664443322 566666678999999
Q ss_pred EcCCc-ccccCHHHHHHHHHhcCCcEEEEEEecCCCCCCcceEEEE--CCCCcE-----EEEEeCCCCCCCCCccccccc
Q 018939 219 LSGDH-LYRMDYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKI--DRSGQI-----IQFAEKPKGPDLKGMQCDTTL 290 (348)
Q Consensus 219 l~gD~-l~~~d~~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~i--d~~g~V-----~~~~EKp~~~~~~~~~~~~~~ 290 (348)
.+.|+ +....--.++..+.++++++.+-+.+... ...-|.+.. ..+|+. +++.|-+....... .-+...
T Consensus 269 ~~vDN~L~~~~DP~~lG~~~~~~~d~~~kvv~r~p--~E~vG~l~~~~~~dGk~~~v~vVEYsei~~~~~~~~-~~~g~~ 345 (630)
T 3ogz_A 269 IQDTNAGATITIPISLALSAEHSLDMNFTCIPRVP--KEPIGLLCRTKKNSGDPWLVANVEYNVFAEVSRALN-KDGGDE 345 (630)
T ss_dssp ECTTBTTHHHHHHHHHHHHHHTTCSEEEEEECCCS--SCSSCEEEEEESSTTSCCEEEEECHHHHHHHHHHC--------
T ss_pred EccCCccccccCHHHhHHHHhcCCCEEEEEEECCC--CcceeeEEEEecCCCceeeeeEEEeccCCHhHhhcc-CCCccc
Confidence 99999 44443345788889999999998887532 233454333 245555 43333221100000 000000
Q ss_pred ccCCCCCCCCCCceeEeEEEEEeHHHHHHHHHh
Q 018939 291 LGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS 323 (348)
Q Consensus 291 ~~~~~~~~~~~~~~a~~GiYif~~~vl~~ll~~ 323 (348)
+. .......+..|+..++|+-+.+...+..
T Consensus 346 ~~---~~~~~~~f~GNtNnl~~~L~a~~~~l~~ 375 (630)
T 3ogz_A 346 VS---DPTGFSPFPGSVNTLVFKLSSYVDRLRE 375 (630)
T ss_dssp --------CCCSSCEEEEEEEEEHHHHHHHHHH
T ss_pred cc---cccccccccccceeeeEEHHHHHHHHHh
Confidence 00 0000112346999999999877666654
No 60
>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21
Probab=97.04 E-value=0.0026 Score=56.34 Aligned_cols=105 Identities=17% Similarity=0.187 Sum_probs=70.6
Q ss_pred CCeeEEEEe--CCCCccCCCCCCCCCccceeeCCcchHHHHHHHHhHhcCCCeE-EEEccCCchhHHHHHHHhccCCCCc
Q 018939 91 KNVAAIILG--GGAGTRLFPLTNRRAKPAVPIGGNYRLIDIPMSNCINSGFNKI-FIMTQFNSFSLNRHLARSYNLGNGV 167 (348)
Q Consensus 91 ~~~~aIILA--gG~GtRl~pLT~~~PKpllpIgGk~pLId~~l~~l~~aGi~~I-vVvt~~~~~~l~~hl~r~y~~~~g~ 167 (348)
+.|.+||++ |..-|||.+ ..........++ |||+|+++.+..++++.+ +++++.... +.+
T Consensus 2 ~~~~~vip~k~g~~KtRL~~---~l~~~~~~~l~~-~ll~~vl~~l~~~~~~~v~vvv~~~~~~-------~~~------ 64 (211)
T 2i5e_A 2 NAMRAVIPYKKAGAKSRLSP---VLSLQEREEFVE-LMLNQVISSLKGAGIEQVDILSPSVYGL-------EEM------ 64 (211)
T ss_dssp CCCEEEEECCCTTTTGGGTT---TSCHHHHHHHHH-HHHHHHHHHHHHTTCSEEEEEESSCTTC-------SSC------
T ss_pred CceEEEEEeCCCCCccccCc---cCCHHHHHHHHH-HHHHHHHHHHHHcCCceEEEEEcCcHHH-------Hhh------
Confidence 458899999 888888842 111222225568 999999999999999999 898876431 111
Q ss_pred ccCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-ccc-CHHHHHH
Q 018939 168 NFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-YRM-DYTEFLQ 234 (348)
Q Consensus 168 ~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~~~-d~~~ll~ 234 (348)
++ +.++... .|.+.++..+...+ .+.++|+.||+. ... .+..+++
T Consensus 65 -~~---~~~v~~~-----------~gl~~sl~~a~~~~-------~~~vlvi~~D~P~l~~~~i~~l~~ 111 (211)
T 2i5e_A 65 -TE---ARVLLDE-----------KDLNEALNRYLKEA-------EEPVLIVMADLPLLSPEHIKEISS 111 (211)
T ss_dssp -CS---SEEEECC-----------SCHHHHHHHHHHHC-------CSCEEEECSCCTTCCHHHHHHHTT
T ss_pred -cC---CEEEECC-----------CCHHHHHHHHHHhc-------CCCEEEEcCCcCCCCHHHHHHHHc
Confidence 11 3444321 37889998886543 378999999993 444 3666665
No 61
>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*
Probab=96.49 E-value=0.00051 Score=66.64 Aligned_cols=75 Identities=12% Similarity=0.171 Sum_probs=48.5
Q ss_pred ceEEEEcCCccccc--CHHHHHHHHHhcCCcEEEEEEecCCCCCCcceEEEECC--CCcEEEEEeCCCCCCCCCcccccc
Q 018939 214 ENVLILSGDHLYRM--DYTEFLQKHIDTKADITVSCVPMDDCRASDYGLMKIDR--SGQIIQFAEKPKGPDLKGMQCDTT 289 (348)
Q Consensus 214 e~vLIl~gD~l~~~--d~~~ll~~h~~~~aditi~~~~~~~~~~~~~g~v~id~--~g~V~~~~EKp~~~~~~~~~~~~~ 289 (348)
..=|+--+||+|+| +|.++++.|. +++.. +++.+.||+..+|+ +++| .|.|||+....
T Consensus 11 ~~~~~~~~dhiy~m~~~l~~i~~~h~-----~tl~g----~~~~~~~Gv~~ld~a~~g~I-~F~ekPk~~~~-------- 72 (374)
T 2iu8_A 11 SSGLVPRGSHMSQSTYSLEQLADFLK-----VEFQG----NGATLLSGVEEIEEAKTAHI-TFLDNEKYAKH-------- 72 (374)
T ss_dssp ----------CCSCCEEHHHHHHHTT-----CEEES----CTTCEECEECCTTTCCTTEE-EECCSSSTHHH--------
T ss_pred ccCcccCccccccCcCcHHHHHHhhC-----CEEEC----CCcceEEEEeccccCCCCeE-EEEeCchhhhh--------
Confidence 45577889999998 8999999885 35553 22367799999985 4577 99999973210
Q ss_pred cccCCCCCCCCCCceeEeEEEEEeHHHHH
Q 018939 290 LLGLSMPDAVKFPYIASMGVYLFRTDVLL 318 (348)
Q Consensus 290 ~~~~~~~~~~~~~~~a~~GiYif~~~vl~ 318 (348)
...++||+|+|+++++.
T Consensus 73 ------------~~~~~aGiyI~~~~~l~ 89 (374)
T 2iu8_A 73 ------------LKSSEAGAIIISRTQFQ 89 (374)
T ss_dssp ------------HHTCCCSEEEEEHHHHH
T ss_pred ------------hhcCCcEEEEeChhHhh
Confidence 14579999999999874
No 62
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=91.17 E-value=7 Score=33.93 Aligned_cols=111 Identities=14% Similarity=0.178 Sum_probs=64.1
Q ss_pred eeeCCcchHHHHHHHHhHhcCCC--eEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcH
Q 018939 118 VPIGGNYRLIDIPMSNCINSGFN--KIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTA 195 (348)
Q Consensus 118 lpIgGk~pLId~~l~~l~~aGi~--~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta 195 (348)
+|.-+....|...++.+.+.... +|+|+-....+...+.+ +.|. . ...+.++..... +........|-+
T Consensus 7 Ip~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~-~~~~-~------~~~i~~i~~~~~-~~~~~~~n~G~~ 77 (255)
T 1qg8_A 7 MTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVI-RPFL-N------DNRVRFYQSDIS-GVKERTEKTRYA 77 (255)
T ss_dssp EEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHH-GGGG-G------STTEEEEECCCC-SHHHHHSSCHHH
T ss_pred EEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHH-HHHh-h------cCCEEEEecccc-cccccccccCHH
Confidence 45555446888889988876543 45666544444333333 3431 1 123666654300 000000014777
Q ss_pred HHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhc-CCcE
Q 018939 196 DAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDT-KADI 243 (348)
Q Consensus 196 ~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~-~adi 243 (348)
.+.-.++... ..++++++.+|.++..+ +..+++.+.+. +.++
T Consensus 78 ~a~N~gi~~a------~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~ 121 (255)
T 1qg8_A 78 ALINQAIEMA------EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAV 121 (255)
T ss_dssp HHHHHHHHHC------CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHHc------CCCEEEEeCCCCccChHHHHHHHHHHHhCCCceE
Confidence 7777776554 46999999999988877 67777777654 4444
No 63
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=90.28 E-value=4.5 Score=34.81 Aligned_cols=102 Identities=16% Similarity=0.160 Sum_probs=63.8
Q ss_pred eeCCcchHHHHHHHHhHhcCCC--eEEEEccCCch---hHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCC
Q 018939 119 PIGGNYRLIDIPMSNCINSGFN--KIFIMTQFNSF---SLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQG 193 (348)
Q Consensus 119 pIgGk~pLId~~l~~l~~aGi~--~IvVvt~~~~~---~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~G 193 (348)
|.-+....|...++.+.+.... +|+|+-....+ ++.+.+.+.+ ..+.++.. . ..|
T Consensus 12 p~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~----------~~i~~i~~--~--------n~G 71 (240)
T 3bcv_A 12 PIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQY----------PNIKVIHK--K--------NAG 71 (240)
T ss_dssp EESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHC----------SSEEEEEC--C--------CCC
T ss_pred ecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhC----------CCEEEEEC--C--------CCC
Confidence 4444436788888888875443 55655443222 2333332222 12666642 1 158
Q ss_pred cHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcEEEE
Q 018939 194 TADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADITVS 246 (348)
Q Consensus 194 ta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~aditi~ 246 (348)
-+.+.-.++... ..++++++.+|.++..+ +..+++.+.+.+.++.+.
T Consensus 72 ~~~a~N~g~~~a------~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~v~~ 119 (240)
T 3bcv_A 72 LGMACNSGLDVA------TGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDAVFT 119 (240)
T ss_dssp HHHHHHHHHHHC------CSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSEEEC
T ss_pred hHHHHHHHHHHc------CCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCEEEE
Confidence 888888887654 46999999999988877 677777777667776543
No 64
>3cgx_A Putative nucleotide-diphospho-sugar transferase; YP_389115.1, joint center for structural genomics; 1.90A {Desulfovibrio desulfuricans subsp}
Probab=81.55 E-value=12 Score=33.42 Aligned_cols=90 Identities=8% Similarity=-0.023 Sum_probs=57.8
Q ss_pred hHHHHHHHHhHhcCCCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcHHHHHHHHHH
Q 018939 125 RLIDIPMSNCINSGFNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWV 204 (348)
Q Consensus 125 pLId~~l~~l~~aGi~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~~l~~ 204 (348)
+|+.+.++.+..++...++++++.....+. ..+.| .+. + +.+. .|. -.|.+.++..++..
T Consensus 38 ~ll~~tl~~~~~~~~~~vvvvt~~~~~~~~--~~~~~-~~~------~-~~~~--~q~--------~~gLg~rl~~a~~~ 97 (242)
T 3cgx_A 38 HFVQDMLQGLARLHADLHICYVPGDADLPE--KFKAW-LGP------Q-HMFA--AQQ--------GLDLGERMKHAMQK 97 (242)
T ss_dssp HHHHHHHHHHTTSSSEEEEEECCCCTTHHH--HHHHH-HCT------T-SEEE--ECC--------SSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCchhhhh--hhhhh-ccC------C-cEEe--cCC--------CCCHHHHHHHHHHH
Confidence 799999999999888888888876554432 00123 111 1 2222 232 15788999988776
Q ss_pred HHhhccCCCceEEEEcCCc--ccccCHHHHHHHHH
Q 018939 205 FEDAKNKNVENVLILSGDH--LYRMDYTEFLQKHI 237 (348)
Q Consensus 205 i~~~~~~~~e~vLIl~gD~--l~~~d~~~ll~~h~ 237 (348)
+-+ .+.+.++|+.+|+ |...++..+++.+.
T Consensus 98 ~~~---~~~~~vliigaD~P~L~~~~l~~a~~~l~ 129 (242)
T 3cgx_A 98 AFD---DGYDRVVLMGSDIPDYPCELVQKALNDLQ 129 (242)
T ss_dssp HHH---TTCSEEEEECSSCTTCCHHHHHHHHHHTT
T ss_pred HHh---CCCCeEEEEcCCCCCCCHHHHHHHHHHhc
Confidence 521 2457899999999 34456777776544
No 65
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=77.60 E-value=45 Score=32.04 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=59.7
Q ss_pred hHHHHHHHHhHhcCC----CeEEEEccCCch-hHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcHHHHH
Q 018939 125 RLIDIPMSNCINSGF----NKIFIMTQFNSF-SLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVR 199 (348)
Q Consensus 125 pLId~~l~~l~~aGi----~~IvVvt~~~~~-~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~ 199 (348)
..|...++.+.+... .+|+||-....+ ...+.+. .+ .. .+. ..|+++..... .|-+.|.-
T Consensus 43 ~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~-~~-~~---~~~-~~v~vi~~~~n---------~G~~~a~N 107 (472)
T 1xhb_A 43 STLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLE-SY-VK---KLK-VPVHVIRMEQR---------SGLIRARL 107 (472)
T ss_dssp HHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHH-HH-HH---SSS-SCEEEEECSSC---------CCHHHHHH
T ss_pred HHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHH-HH-HH---HCC-CcEEEEECCCC---------CChHHHHH
Confidence 477777888777532 267777554332 2333332 11 00 001 13677654332 57888888
Q ss_pred HHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcE
Q 018939 200 QFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADI 243 (348)
Q Consensus 200 ~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~adi 243 (348)
.++... ..+.++++++|..+..+ +..+++.+.+....+
T Consensus 108 ~g~~~A------~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~ 146 (472)
T 1xhb_A 108 KGAAVS------RGQVITFLDAHCECTAGWLEPLLARIKHDRRTV 146 (472)
T ss_dssp HHHHHC------CSSEEEEEESSEEECTTCHHHHHHHHHHCTTEE
T ss_pred HHHHhc------cCCeEEEECCCeEeCccHHHHHHHHHHhCCCEE
Confidence 877554 46999999999988776 788888777655433
No 66
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=71.49 E-value=40 Score=32.85 Aligned_cols=92 Identities=9% Similarity=0.089 Sum_probs=57.2
Q ss_pred HHHHHHHHhHhcCC-C---eEEEEccCCch-hHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcHHHHHH
Q 018939 126 LIDIPMSNCINSGF-N---KIFIMTQFNSF-SLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQ 200 (348)
Q Consensus 126 LId~~l~~l~~aGi-~---~IvVvt~~~~~-~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta~Al~~ 200 (348)
.|...|+.+.+... . +|+||-....+ .+...+ +.+ ..|.++..... .|-+.|...
T Consensus 81 ~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~~-~~~----------~~v~vi~~~~n---------~G~~~A~N~ 140 (501)
T 2ffu_A 81 ALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALL-GKI----------EKVRVLRNDRR---------EGLMRSRVR 140 (501)
T ss_dssp HHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHGG-GGB----------TTEEEEECSSC---------CHHHHHHHH
T ss_pred HHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHHH-hcC----------CCEEEEECCCC---------cCHHHHHHH
Confidence 67777777766432 2 67776544332 222222 221 13677654332 577888887
Q ss_pred HHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcE
Q 018939 201 FIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADI 243 (348)
Q Consensus 201 ~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~adi 243 (348)
++... ..+.++++.+|..+..+ +..+++.+.+...++
T Consensus 141 G~~~A------~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~v 178 (501)
T 2ffu_A 141 GADAA------QAKVLTFLDSHCECNEHWLEPLLERVAEDRTRV 178 (501)
T ss_dssp HHHHC------CSSEEEECCSSEEECTTCHHHHHHHHHHCTTEE
T ss_pred HHHhc------CCCEEEEECCCcccCccHHHHHHHHHHhCCCeE
Confidence 77554 46999999999987766 788888877655543
No 67
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=69.65 E-value=43 Score=33.51 Aligned_cols=105 Identities=8% Similarity=0.003 Sum_probs=63.3
Q ss_pred ceeeCCcchHHHHHHHHhHhcC---CCeEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCC
Q 018939 117 AVPIGGNYRLIDIPMSNCINSG---FNKIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQG 193 (348)
Q Consensus 117 llpIgGk~pLId~~l~~l~~aG---i~~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~G 193 (348)
.+|.-+....|...++.+.+.. --+|+|+-....+...+.+ +.+ .. ...+.++..... -.|
T Consensus 98 iIp~~n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~-~~~--~~-----~~~i~~i~~~~~--------~~g 161 (625)
T 2z86_A 98 VIPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIV-REF--ES-----LLNIKYVRQKDY--------GYQ 161 (625)
T ss_dssp EEEESSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHH-HTT--TT-----TSCEEEEEECCC--------SCC
T ss_pred EEecCCcHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHH-HHh--hh-----cCCeEEEEeCCC--------Ccc
Confidence 3455555468888888888753 3456666554444333333 333 11 112555543211 135
Q ss_pred cHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCcE
Q 018939 194 TADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKADI 243 (348)
Q Consensus 194 ta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~adi 243 (348)
-+.+.-.++... ..+.++++.+|.+...+ +..+++.+.+....+
T Consensus 162 ~~~a~N~g~~~a------~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~ 206 (625)
T 2z86_A 162 LCAVRNLGLRAA------KYNYVAILDCDMAPNPLWVQSYMELLAVDDNVA 206 (625)
T ss_dssp HHHHHHHHHHHC------CSSEEEEECTTEEECTTHHHHHHHHHHHCTTEE
T ss_pred hhHHHHHHHHhC------CcCEEEEECCCCCCCHHHHHHHHHHHhcCCceE
Confidence 777877776554 46999999999988877 677777776555433
No 68
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=62.07 E-value=86 Score=31.27 Aligned_cols=101 Identities=13% Similarity=0.192 Sum_probs=61.5
Q ss_pred eeeCCcc-hHHHHHHHHhHhcCC-C---eEEEEccCCchhH-HHHHHHhccCCCCcccCCCcEEEEecccCCCcCCcccc
Q 018939 118 VPIGGNY-RLIDIPMSNCINSGF-N---KIFIMTQFNSFSL-NRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWF 191 (348)
Q Consensus 118 lpIgGk~-pLId~~l~~l~~aGi-~---~IvVvt~~~~~~l-~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~ 191 (348)
+|.-+.. ..|...|+.+.+... . +|+||-....+.- .+.+. .| ... + ..|.++.....
T Consensus 118 Ip~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~-~~-~~~---~--~~v~vi~~~~n--------- 181 (570)
T 2d7i_A 118 IPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLE-DY-MAL---F--PSVRILRTKKR--------- 181 (570)
T ss_dssp EEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHH-HH-HTT---S--TTEEEEECSSC---------
T ss_pred EEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHH-HH-HHh---C--CeEEEEECCCC---------
Confidence 3445553 577788888777433 2 6777755433222 33332 22 010 1 13777754332
Q ss_pred CCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcC
Q 018939 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTK 240 (348)
Q Consensus 192 ~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~ 240 (348)
.|-+.|.-.++... ..+.++++++|..+..+ +..+++.+.+..
T Consensus 182 ~G~~~A~N~G~~~A------~gd~i~fLD~D~~~~p~~L~~ll~~l~~~~ 225 (570)
T 2d7i_A 182 EGLIRTRMLGASVA------TGDVITFLDSHCEANVNWLPPLLDRIARNR 225 (570)
T ss_dssp CCHHHHHHHHHHHC------CSSEEEECCSSEEECTTCSHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHhc------CCCEEEEEcCCccccccHHHHHHHHHHhCC
Confidence 58888888887654 46999999999988776 778888776544
No 69
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=58.73 E-value=84 Score=28.66 Aligned_cols=51 Identities=10% Similarity=0.065 Sum_probs=36.8
Q ss_pred CCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-cccC-HHHHHHHHHh-cCCcEEEEEE
Q 018939 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-YRMD-YTEFLQKHID-TKADITVSCV 248 (348)
Q Consensus 192 ~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~~~d-~~~ll~~h~~-~~aditi~~~ 248 (348)
.|-+.|+..++... ..+.++++.+|.+ +..+ +..+++...+ .+.++.....
T Consensus 117 ~G~~~a~n~g~~~a------~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v~g~~ 170 (329)
T 3ckj_A 117 PGKGEALWRSLAAS------RGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKSFY 170 (329)
T ss_dssp CSHHHHHHHHHHHC------CCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEEEEEE
T ss_pred CCHHHHHHHHHHhC------CCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEEEEEe
Confidence 58888888887554 4699999999998 7776 6777776543 3556555443
No 70
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=57.31 E-value=83 Score=31.33 Aligned_cols=99 Identities=15% Similarity=0.139 Sum_probs=60.2
Q ss_pred eeeCCcchHHHHHHHHhHhcCCC--eEEEEccCCchhHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccccCCcH
Q 018939 118 VPIGGNYRLIDIPMSNCINSGFN--KIFIMTQFNSFSLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKWFQGTA 195 (348)
Q Consensus 118 lpIgGk~pLId~~l~~l~~aGi~--~IvVvt~~~~~~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~~~Gta 195 (348)
+|.-+....|...++.+.+.... +|+|+-....+...+.+.+.. .. ...+.++.. . ..|-+
T Consensus 381 i~~yn~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~--~~-----~~~i~~~~~-~---------n~G~~ 443 (625)
T 2z86_A 381 IPAYNCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHY--AN-----HPRVRFISQ-K---------NKGIG 443 (625)
T ss_dssp EEESSCTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHH--TT-----CTTEEEEEE-C---------CCCHH
T ss_pred EeCCCCHHHHHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHH--hh-----CCcEEEEeC-C---------CCCHH
Confidence 34445447888999998875433 566664433333333333221 11 113666642 1 15888
Q ss_pred HHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhc
Q 018939 196 DAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDT 239 (348)
Q Consensus 196 ~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~ 239 (348)
.+.-.++... ..++++++.+|.++..+ +..+++.+.+.
T Consensus 444 ~a~n~g~~~a------~g~~i~~ld~D~~~~~~~l~~~~~~~~~~ 482 (625)
T 2z86_A 444 SASNTAVRLC------RGFYIGQLDSDDFLEPDAVELCLDEFRKD 482 (625)
T ss_dssp HHHHHHHHHC------CSSEEEECCTTCEECTTHHHHHHHHHHHC
T ss_pred HHHHHHHHhc------CCCEEEEECCCcccChhHHHHHHHHHHhC
Confidence 8888887654 46999999999988777 67777766543
No 71
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=47.55 E-value=98 Score=29.43 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=38.7
Q ss_pred CCcHHHHHHHHHHHHhhccCCCceEEEEcCCcc-cccC-HHHHHHHHHhc-CCcEEEEEEe
Q 018939 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHL-YRMD-YTEFLQKHIDT-KADITVSCVP 249 (348)
Q Consensus 192 ~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l-~~~d-~~~ll~~h~~~-~aditi~~~~ 249 (348)
.|-+.|+..++... ..+.++++.+|.. +..+ +..+++...+. +.++.+....
T Consensus 165 ~G~g~A~n~G~~~A------~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~d~v~G~~~ 219 (387)
T 3f1y_A 165 HGKGDAMWRALSVT------RGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGVRFVKAAYR 219 (387)
T ss_dssp CSHHHHHHHHTTTC------CSSEEEECCTTCSSCCTHHHHTTHHHHHHSTTCCEEEEEEE
T ss_pred CCHHHHHHHHHHhc------CCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCCceEEEEeec
Confidence 58888888886443 4689999999998 6765 77788777654 6777766554
No 72
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=43.40 E-value=1.6e+02 Score=30.03 Aligned_cols=100 Identities=11% Similarity=0.040 Sum_probs=61.0
Q ss_pred CCcchHHHHHHHHhHhc-----CCCeEEEEccCCch-----hHHHHHHHhccCCCCcccCCCcEEEEecccCCCcCCccc
Q 018939 121 GGNYRLIDIPMSNCINS-----GFNKIFIMTQFNSF-----SLNRHLARSYNLGNGVNFGDGFVEVLAATQTPGEAGKKW 190 (348)
Q Consensus 121 gGk~pLId~~l~~l~~a-----Gi~~IvVvt~~~~~-----~l~~hl~r~y~~~~g~~~~~~~v~vl~~~q~~~~~g~~~ 190 (348)
-++...|...|+.+.+. ...+|+||=+-..+ .+.+.+.+.. ..|.++... .
T Consensus 189 YN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~----------~~I~vI~~~-N-------- 249 (657)
T 4fix_A 189 FNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLG----------SRLSIHDQP-N-------- 249 (657)
T ss_dssp SSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHG----------GGEEEEECC-C--------
T ss_pred cCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcC----------CCEEEEECC-C--------
Confidence 34446888888888764 23367777554321 2333333221 136776532 2
Q ss_pred cCCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHhcCCc
Q 018939 191 FQGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHIDTKAD 242 (348)
Q Consensus 191 ~~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~~~ad 242 (348)
.|-+.+.-.++...... .+.+++++++.|.+...+ +..+++.+......
T Consensus 250 -~G~a~a~N~Gl~~A~g~--~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~ 299 (657)
T 4fix_A 250 -LGGSGGYSRVMYEALKN--TDCQQILFMDDDIRLEPDSILRVLAMHRFAKAP 299 (657)
T ss_dssp -CHHHHHHHHHHHHHHHH--CCCSEEEEECSSEEECTHHHHHHHHHHHHBSSC
T ss_pred -CCHHHHHHHHHHHHHhc--CCCCEEEEECCCCccChhHHHHHHHHHHhCCCc
Confidence 57777777777655320 135899999999988877 67788777665433
No 73
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=30.02 E-value=2.8e+02 Score=28.92 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=31.9
Q ss_pred CCcHHHHHHHHHHHHhhccCCCceEEEEcCCcccccC-HHHHHHHHHh
Q 018939 192 QGTADAVRQFIWVFEDAKNKNVENVLILSGDHLYRMD-YTEFLQKHID 238 (348)
Q Consensus 192 ~Gta~Al~~~l~~i~~~~~~~~e~vLIl~gD~l~~~d-~~~ll~~h~~ 238 (348)
.|-++++..++... ..|.++++.+|.....| +..++..+.+
T Consensus 224 ~GKa~alN~gl~~a------~gd~Il~lDaD~~~~pd~L~~lv~~~~~ 265 (802)
T 4hg6_A 224 HAKAGNMSAALERL------KGELVVVFDADHVPSRDFLARTVGYFVE 265 (802)
T ss_dssp SHHHHHHHHHHHHC------CCSEEEECCTTEEECTTHHHHHHHHHHH
T ss_pred CcchHHHHHHHHhc------CCCEEEEECCCCCcChHHHHHHHHHHhc
Confidence 46778888877654 46999999999988877 6788877754
No 74
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A {Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Probab=25.42 E-value=77 Score=28.16 Aligned_cols=26 Identities=8% Similarity=0.169 Sum_probs=21.7
Q ss_pred CcchHHHHHHHHhHhcCCCeEEEEccC
Q 018939 122 GNYRLIDIPMSNCINSGFNKIFIMTQF 148 (348)
Q Consensus 122 Gk~pLId~~l~~l~~aGi~~IvVvt~~ 148 (348)
+. |-|.-.++.|...|+++|+|+--+
T Consensus 63 ~~-P~i~~al~~l~~~G~~~ivV~Pl~ 88 (269)
T 2xvy_A 63 AA-PSPAEALAGMAEEGFTHVAVQSLH 88 (269)
T ss_dssp CC-CCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CC-CCHHHHHHHHHHCCCCEEEEEece
Confidence 45 889999999999999999887544
Done!