Query 018940
Match_columns 348
No_of_seqs 148 out of 2142
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 08:25:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.9 4.7E-25 1.6E-29 210.9 34.0 302 23-338 25-346 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.9 7.9E-25 2.7E-29 209.9 20.1 288 27-338 31-342 (451)
3 2gfp_A EMRD, multidrug resista 99.9 6.5E-23 2.2E-27 192.4 18.0 259 30-315 6-265 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.9 1.9E-19 6.5E-24 174.8 31.2 287 25-336 14-373 (491)
5 2cfq_A Lactose permease; trans 99.8 5.2E-20 1.8E-24 175.9 12.8 291 24-337 7-309 (417)
6 4gc0_A D-xylose-proton symport 99.8 3E-16 1E-20 152.0 25.8 265 57-334 53-359 (491)
7 2xut_A Proton/peptide symporte 99.7 1.3E-15 4.6E-20 148.9 18.4 169 29-221 17-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.3 1.4E-10 4.7E-15 110.5 18.0 175 26-223 254-433 (451)
9 2cfq_A Lactose permease; trans 99.1 5.6E-09 1.9E-13 99.1 17.9 162 42-228 238-404 (417)
10 3o7q_A L-fucose-proton symport 99.0 3.1E-08 1.1E-12 93.8 18.1 141 29-187 263-405 (438)
11 4gc0_A D-xylose-proton symport 98.9 3.3E-08 1.1E-12 95.3 15.7 173 42-229 295-468 (491)
12 4aps_A DI-OR tripeptide H+ sym 98.8 3.2E-09 1.1E-13 102.5 7.2 173 37-227 296-475 (491)
13 2gfp_A EMRD, multidrug resista 98.2 5.2E-07 1.8E-11 83.7 2.6 141 28-182 203-345 (375)
14 2xut_A Proton/peptide symporte 98.2 8.4E-06 2.9E-10 79.1 10.7 119 60-185 336-463 (524)
15 2g9p_A Antimicrobial peptide l 32.7 12 0.00041 19.1 0.4 12 78-89 2-13 (26)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.95 E-value=4.7e-25 Score=210.86 Aligned_cols=302 Identities=11% Similarity=-0.039 Sum_probs=215.6
Q ss_pred chHhhHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHH
Q 018940 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (348)
Q Consensus 23 ~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i 102 (348)
.+......+..+..........+++|.+.++.|+|+.+.|++.++..+..++++|+.|+++||+||||.+ +.+....++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l-~~~~~~~~~ 103 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI-ITGLFLYAL 103 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHH-HHHHHHHHH
Confidence 3444444555555555556667777777667799999999999999999999999999999999999885 467777777
Q ss_pred HHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Q 018940 103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182 (348)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~ 182 (348)
+....+. .+ ...+.+...+.+ .+.|++.+...++..++++|..+ +|+|++..++.+.+..+|..+++.+
T Consensus 104 ~~~~~~~--~~----~~~~~~~l~~~~----~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~ 172 (438)
T 3o7q_A 104 GAALFWP--AA----EIMNYTLFLVGL----FIIAAGLGCLETAANPFVTVLGP-ESSGHFRLNLAQTFNSFGAIIAVVF 172 (438)
T ss_dssp HHHHHHH--HH----HTTCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHSSC-STTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh--cc----ccccHHHHHHHH----HHHHhhHHHhhhhHHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7654411 00 012333332222 46788888888888999999985 6789999999999999999988777
Q ss_pred HHHHHHhccCC-c---------------ccchhhHHHHHHHHHHHHHHHHHHHHHhh-cccccccc-cccCCchhHHHHH
Q 018940 183 AFIVFSVSTAK-T---------------HADLENQYRWIAYSSIFIGCCFVGIFLSR-TEEPRLKM-GLRGNSHARISWA 244 (348)
Q Consensus 183 ~~~~~~~~~~~-~---------------~~~~~~g~~~~~~i~~~i~~~~~ll~~~~-~~e~~~~~-~~~~~~~~~~~~~ 244 (348)
.+.+.....+. + ..+...+||+.+++.+++..+..++.++. .||++.++ +++++++.++.++
T Consensus 173 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 252 (438)
T 3o7q_A 173 GQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLS 252 (438)
T ss_dssp TTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHH
T ss_pred HHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhHH
Confidence 65555221110 0 00011238999877766665555444332 34433222 1223344556788
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHH
Q 018940 245 YWFKKILYYQVALVYMLTRLVVNVSQAYLAFY-VINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSA 322 (348)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~y-l~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~ 322 (348)
+++|||.++...+..++..........|+|.| +++..|.+..+.+....+..++.+++.++.+++ ||+|+| +.+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~--~~~~~ 330 (438)
T 3o7q_A 253 RLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH--KVLAA 330 (438)
T ss_dssp HHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH--HHHHH
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHH
Confidence 89999998888877777777788888999999 888889988777777677778889999999998 999999 88888
Q ss_pred HHHHHHHHHHhHhhcc
Q 018940 323 GGVLWVFCGAGILILP 338 (348)
Q Consensus 323 g~~l~~v~~~~~~~~~ 338 (348)
+.++.+++.+...+.+
T Consensus 331 ~~~~~~~~~~~~~~~~ 346 (438)
T 3o7q_A 331 YALIAMALCLISAFAG 346 (438)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcC
Confidence 8888888877666654
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.93 E-value=7.9e-25 Score=209.88 Aligned_cols=288 Identities=13% Similarity=0.021 Sum_probs=208.9
Q ss_pred hHHhhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHH
Q 018940 27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (348)
Q Consensus 27 ~~~~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~ 106 (348)
....++.+..........++++.+.++. .|+.+.|++.++..+...++++++|+++||+||||.+ +.+.+..+++...
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l-~~~~~~~~~~~~~ 108 (451)
T 1pw4_A 31 LGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL-PAGLILAAAVMLF 108 (451)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHH-HHHHHHHHHHHHH
Confidence 3444455555555555667788888889 9999999999999999999999999999999998875 5677777776654
Q ss_pred HhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018940 107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186 (348)
Q Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~ 186 (348)
... .+.. ..+.....+.+ .+.|++.+...++..++++|..+ +++|++..++.+.+..+|..+++.+++.+
T Consensus 109 ~~~--~~~~---~~~~~~l~~~~----~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 109 MGF--VPWA---TSSIAVMFVLL----FLCGWFQGMGWPPCGRTMVHWWS-QKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHH--CHHH---HSSSSHHHHHH----HHHHHHHHHTHHHHHHHHHTTCT-TTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHh--hhhc---cccHHHHHHHH----HHHHHHhhhccchHHHHHHHHCC-chhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 1100 11333232322 36778888888888999999985 57899999999999999988877666554
Q ss_pred HHhccCCcccchhhH-HHHHHHHHHHHHHHHHHHHHhhccccccccc----cc--C------------CchhHH-HHHHH
Q 018940 187 FSVSTAKTHADLENQ-YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG----LR--G------------NSHARI-SWAYW 246 (348)
Q Consensus 187 ~~~~~~~~~~~~~~g-~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~----~~--~------------~~~~~~-~~~~~ 246 (348)
.. ..+ ||+.+++.+++.++..++.++..||++.+.+ ++ + +.+.++ ..++.
T Consensus 179 ~~----------~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (451)
T 1pw4_A 179 MA----------WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYV 248 (451)
T ss_dssp HH----------HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHT
T ss_pred HH----------HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHH
Confidence 42 345 9999988888887777777777887543211 00 0 001111 14567
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHh--hhhhhHHHHHH
Q 018940 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWT--GQRLKAYYSAG 323 (348)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~--g~r~k~~~~~g 323 (348)
+|||.++...+..++..........|+|.|+++..|.+..+.+.......++.+++.++.+++ ||+ |+| +.+..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~--~~~~~~ 326 (451)
T 1pw4_A 249 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR--GATGVF 326 (451)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH--HHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHH
Confidence 788998888888777778888899999999999899988777777777778889999999998 999 888 777777
Q ss_pred HHHHH-HHHHhHhhcc
Q 018940 324 GVLWV-FCGAGILILP 338 (348)
Q Consensus 324 ~~l~~-v~~~~~~~~~ 338 (348)
..+.. ++.+.+.+.+
T Consensus 327 ~~~~~~~~~~~~~~~~ 342 (451)
T 1pw4_A 327 FMTLVTIATIVYWMNP 342 (451)
T ss_dssp HHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 66655 6665555544
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=6.5e-23 Score=192.40 Aligned_cols=259 Identities=12% Similarity=0.030 Sum_probs=189.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhc
Q 018940 30 GSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG 109 (348)
Q Consensus 30 ~~g~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~ 109 (348)
.+..+..........+.++.+.++.|.|+.+.|++.+...+...+++|+.|+++||+||||.++ .+....+++......
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~-~~~~~~~~~~~~~~~ 84 (375)
T 2gfp_A 6 VLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVIL-VGMSIFMLATLVAVT 84 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH-HHHHHHHHHHHHHHH
Confidence 3445555556666677788777777999999999999999999999999999999999999865 566666666543321
Q ss_pred CcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018940 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (348)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~ 189 (348)
. .+.....+ ...+.+++.+...+...+++.|..+ +|+|++..+..+.+..+|..+++.+.+.
T Consensus 85 --~-------~~~~~l~~----~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~---- 146 (375)
T 2gfp_A 85 --T-------SSLTVLIA----ASAMQGMGTGVGGVMARTLPRDLYE-RTQLRHANSLLNMGILVSPLLAPLIGGL---- 146 (375)
T ss_dssp --H-------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-TSSCCSHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred --h-------ccHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHhhHHHHHH----
Confidence 1 12222222 2236778888888888899999885 5789999999988888887776544322
Q ss_pred ccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Q 018940 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS 269 (348)
Q Consensus 190 ~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 269 (348)
+. +..+||+.+.+.+++..+..++..+..||++.++++ +++.++.+++.+|||+++...+..++........
T Consensus 147 l~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (375)
T 2gfp_A 147 LD------TMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP--RTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAF 218 (375)
T ss_dssp SS------CHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC--CCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH------HhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc--cccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 22 246899999988887777766566677875433221 1223345677899999888877777777888888
Q ss_pred hHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhh
Q 018940 270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQR 315 (348)
Q Consensus 270 ~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r 315 (348)
..++|.|+++..|.+..+.+.......++.+++.++.+++ ||.+++
T Consensus 219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~ 265 (375)
T 2gfp_A 219 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL 265 (375)
T ss_dssp HHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999889888777766666667777787777776 776654
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.87 E-value=1.9e-19 Score=174.75 Aligned_cols=287 Identities=9% Similarity=-0.068 Sum_probs=182.5
Q ss_pred HhhHHhhhhhHHHHHHHHHHHHHHHHHHh------hCCChhHHHHHHHHHHHHHHhhhhhhHhhhcc-cCCchHHHHHHH
Q 018940 25 SVLYYGSGHMLNDITAACWFTYLLLFLTD------IGLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGS 97 (348)
Q Consensus 25 ~~~~~~~g~~~~~~~~~~~~~~l~~~~~~------~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr-~Grrr~~i~~~~ 97 (348)
......+..+..........++++.|+++ .|.|..+.|++.++..+...+++++.|+++|| +||||.+ ..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~-~~~~ 92 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV-FWGG 92 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH-HHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH-HHHH
Confidence 33444455556666666667888888876 69999999999999999999999999999999 8999885 4677
Q ss_pred HHHHHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCccc--chhHHHHHHHHHHHH
Q 018940 98 VLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTS--RVVLTSCRNAFTMVA 175 (348)
Q Consensus 98 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--R~~~~~~~~~~~~ig 175 (348)
+..+++...... . .+.....+.+ .+.+++.+...++..++++|..+ +++ |+...+..+.+.++|
T Consensus 93 ~~~~~~~~~~~~---~------~~~~~~~~~~----~l~g~~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~g 158 (491)
T 4aps_A 93 VLIMLGHIVLAL---P------FGASALFGSI----ILIIIGTGFLKPNVSTLVGTLYD-EHDRRRDAGFSIFVFGINLG 158 (491)
T ss_dssp HHHHHHHHHHHS---C------CSTTHHHHHH----HHHHHHHHHHHHHHHHHHHHHSS-SCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---h------hhHHHHHHHH----HHHHHHHHhccchHHHHHHHHcC-cccccceeeehHHHHHHHHH
Confidence 777776654432 1 2333232222 36778888888888899999885 455 666777777888888
Q ss_pred HHHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccc---cccC-Cchh-HHHHHH-----
Q 018940 176 NLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---GLRG-NSHA-RISWAY----- 245 (348)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~---~~~~-~~~~-~~~~~~----- 245 (348)
..+++.+.+.+. +..||++.+++.++..++..++..+..++...++ ++++ +++. ++..+.
T Consensus 159 ~~~~~~~~~~l~----------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 228 (491)
T 4aps_A 159 AFIAPLIVGAAQ----------EAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAV 228 (491)
T ss_dssp HHHHHHHHHHHH----------HHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHH----------hhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHH
Confidence 887766654443 2457999998876666655555444433321111 1110 1111 110000
Q ss_pred ------------------------------------------------HHHhH--HHHHHHHHHHHHHHHHHhhhHHHHH
Q 018940 246 ------------------------------------------------WFKKI--LYYQVALVYMLTRLVVNVSQAYLAF 275 (348)
Q Consensus 246 ------------------------------------------------~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~ 275 (348)
..+++ ..+.+.+..++..........++|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (491)
T 4aps_A 229 AGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLAT 308 (491)
T ss_dssp HHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHH
T ss_pred HHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 00111 1222333444445566677788999
Q ss_pred HHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhh---hHHHHHHHHHHHHHHHhHhh
Q 018940 276 YVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRL---KAYYSAGGVLWVFCGAGILI 336 (348)
Q Consensus 276 yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~---k~~~~~g~~l~~v~~~~~~~ 336 (348)
|.++..+.+....+.......+..+++.++.+++ ||+|||. .+.+..+..+.+++.+.+.+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 373 (491)
T 4aps_A 309 FAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAI 373 (491)
T ss_dssp HHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH
Confidence 9998877764444444455566777788888887 9999882 12344777777777666554
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.82 E-value=5.2e-20 Score=175.86 Aligned_cols=291 Identities=12% Similarity=0.067 Sum_probs=157.9
Q ss_pred hHhhHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHH
Q 018940 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (348)
Q Consensus 24 ~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i 102 (348)
++........+..........++++.|+++. |+|+.+.|++.++..+...+++|++|+++||+||||++++ +....++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~-~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW-IITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHH-HHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHH
Confidence 3434444444444555556678999999885 9999999999999999999999999999999999998654 4333322
Q ss_pred HHHHHh-cCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHH
Q 018940 103 SFSSVF-GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (348)
Q Consensus 103 ~~~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~ 181 (348)
.....+ ....+. . ..... ....+.....+.+++.......++.++. +++|+...+..+....+|..+++.
T Consensus 86 ~~~~~~~~~~~~~--~-~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~g~~~~~~ 156 (417)
T 2cfq_A 86 MFAPFFIFIFGPL--L-QYNIL---VGSIVGGIYLGFCFNAGAPAVEAFIEKV---SRRSNFEFGRARMFGCVGWALGAS 156 (417)
T ss_dssp CHHHHHHHTHHHH--H-HTTCC---HHHHGGGSSTTHHHHTTHHHHHHHHHHH---HHHHTCCHHHHSSSTTTHHHHHHH
T ss_pred HHHHHHHHHHHHH--H-HHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHh---hhhcccchHHHHHHHHHHHHHHHH
Confidence 111010 000000 0 00000 0111000011222222222222222221 123344444444444555555444
Q ss_pred HHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccc--cc----cCCchhHHHHHHHHHhHHHHHH
Q 018940 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM--GL----RGNSHARISWAYWFKKILYYQV 255 (348)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~ 255 (348)
+.+.+. ..+|++.+++.++..++..++.+...||++.+. ++ ++++...+.+++++|||+++..
T Consensus 157 l~~~l~-----------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (417)
T 2cfq_A 157 IVGIMF-----------TINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFL 225 (417)
T ss_dssp HHHHHH-----------HHCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHH-----------HhchhHHHHHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhH
Confidence 433332 246788887665554433333333334432111 11 1111122345678889988766
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhccccc---chhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHH
Q 018940 256 ALVYMLTRLVVNVSQAYLAFYVINDLRMG---QSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCG 331 (348)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~yl~~~~~~~---~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~ 331 (348)
.+..++....+.....++|.|+.+..+.. ....+....+..++.+++.++.+++ ||+|+| +.+..+..+.+++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~--~~l~~~~~~~~~~~ 303 (417)
T 2cfq_A 226 SLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK--NALLLAGTIMSVRI 303 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH--HHHHHHHHHHHHHH
Confidence 55544444455555667888887765432 2233444444455667788888987 999999 88878877777766
Q ss_pred HhHhhc
Q 018940 332 AGILIL 337 (348)
Q Consensus 332 ~~~~~~ 337 (348)
+...+.
T Consensus 304 ~~~~~~ 309 (417)
T 2cfq_A 304 IGSSFA 309 (417)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 555443
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.75 E-value=3e-16 Score=151.99 Aligned_cols=265 Identities=13% Similarity=0.063 Sum_probs=153.7
Q ss_pred ChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCccc-----------CcccchhH
Q 018940 57 SPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL-----------STSTLKVE 125 (348)
Q Consensus 57 s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~-----------~~~~~~~~ 125 (348)
++.+.|++.+...+..+++++++|+++||+|||+.++ .+.+++.++...... .+.... ...+....
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~-~~~~l~~i~~i~~a~--~~~~~~~~~~~~~~~~~~a~~~~~l 129 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK-IAAVLFFISGVGSAW--PELGFTSINPDNTVPVYLAGYVPEF 129 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHHHHHHHC--TTTTTSCSSSSSSCCGGGGGCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHH--HhhhhhhhcchhHHHHHHhhhHHHH
Confidence 4567889999999999999999999999999998865 566666666543321 110000 01122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHHHH
Q 018940 126 TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWI 205 (348)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 205 (348)
.+...+.|++.+...+...++++|.+| +++|++..++.+.+...|...+.............. .....+||+.
T Consensus 130 ----~~~R~l~G~g~G~~~~~~~~~i~E~~p-~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 202 (491)
T 4gc0_A 130 ----VIYRIIGGIGVGLASMLSPMYIAELAP-AHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDAS--WLNTDGWRYM 202 (491)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHTTSC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT--TTTTTHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhhCC-HHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccc--cccchhhHHH
Confidence 233347788888888888889999985 688999999988888888777666544433221110 0124568877
Q ss_pred HHHHHHHHHHHHHHHHhhccccccc---ccc--cC-------------Cch---hHHHH---------HHHHHhHHHHHH
Q 018940 206 AYSSIFIGCCFVGIFLSRTEEPRLK---MGL--RG-------------NSH---ARISW---------AYWFKKILYYQV 255 (348)
Q Consensus 206 ~~i~~~i~~~~~ll~~~~~~e~~~~---~~~--~~-------------~~~---~~~~~---------~~~~~~~~~~~~ 255 (348)
+.+.++..++ .++..+..||++.. +++ +. +++ .++.. ...++.+.....
T Consensus 203 ~~~~~~~~~~-~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (491)
T 4gc0_A 203 FASECIPALL-FLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIG 281 (491)
T ss_dssp HHTTHHHHHH-HHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHH
T ss_pred hhhhhhhhhh-hhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHH
Confidence 7666554444 44455677885421 000 00 000 00000 000111111222
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhcccccchhhhHHhHHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHhH
Q 018940 256 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQEM-AWTGQRLKAYYSAGGVLWVFCGAGI 334 (348)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l-~r~g~r~k~~~~~g~~l~~v~~~~~ 334 (348)
.....+.+........++..++.+..+.+.........+..+..+++.++..++ ||+||| +....+.....++.+.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr--~~~~~~~~~~~~~~~~l 359 (491)
T 4gc0_A 282 VMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK--PLQIIGALGMAIGMFSL 359 (491)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCc--chhccchHHHHHHHHHH
Confidence 222333333323334445555555556655444444455567778888888887 999999 77777766666555443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.67 E-value=1.3e-15 Score=148.87 Aligned_cols=169 Identities=11% Similarity=-0.043 Sum_probs=118.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhh-C------CChhHHHHHHHHHHHHHHhhhhhhHhhhccc-CCchHHHHHHHHHH
Q 018940 29 YGSGHMLNDITAACWFTYLLLFLTDI-G------LSPRGAAAVMLSGQIADGFATIFIGELIDRF-GHFKIWHGAGSVLV 100 (348)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~~~~~-g------~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~-Grrr~~i~~~~~~~ 100 (348)
..+..+......+...++++.|+++. | .|+.+.|++.++..+...+++++.|+++||+ ||||.++ .+.+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~-~~~~~~ 95 (524)
T 2xut_A 17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL-WLSLIY 95 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-HHHHHH
Confidence 34445555666666778889998875 8 9999999999999999999999999999999 9998864 566666
Q ss_pred HHHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHH---HHHHHHHHHH
Q 018940 101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC---RNAFTMVANL 177 (348)
Q Consensus 101 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~---~~~~~~ig~~ 177 (348)
+++...... .+ .+.....+. ..+.+++.+...++..++++|..+ +++|++..+. .+...++|..
T Consensus 96 ~~~~~~~~~--~~------~~~~~~~~~----~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~g~~ 162 (524)
T 2xut_A 96 CVGHAFLAI--FE------HSVQGFYTG----LFLIALGSGGIKPLVSSFMGDQFD-QSNKSLAQKAFDMFYFTINFGSF 162 (524)
T ss_dssp HHHHHHHHH--TS------SCHHHHHHH----HHHHHHHHHTTHHHHHHHHHHTCS-TTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hc------ccHHHHHHH----HHHHHHhccccchhHHHHHHHHcC-ccchHHHHHHHHHHHHHHHHHHH
Confidence 666543321 11 123322222 236778888888888899999885 5678665544 7777777777
Q ss_pred HHHHHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHH
Q 018940 178 SLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL 221 (348)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~ 221 (348)
+++.+.+.+. +..+|++.+.+.+++.++..++.+
T Consensus 163 ~g~~~~~~l~----------~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 163 FASLSMPLLL----------KNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHTSTHHH----------HTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----------ccccHHHHHHHHHHHHHHHHHHHH
Confidence 6554433332 235799999887776665554443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.27 E-value=1.4e-10 Score=110.49 Aligned_cols=175 Identities=9% Similarity=-0.027 Sum_probs=118.7
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhccc--CCchHHHHHHHHHHH-
Q 018940 26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGAGSVLVA- 101 (348)
Q Consensus 26 ~~~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~--Grrr~~i~~~~~~~~- 101 (348)
.....+..+...........+++.|+++. |.++.+.|.+.++..+...++.++.|+++||+ |||+.++. +.....
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~-~~~~~~~ 332 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV-FFMTLVT 332 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH-HHHHHHH
Confidence 34445555555556666778899999885 99999999999999999999999999999999 98887554 444433
Q ss_pred HHHHHHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHH-HHHHHH
Q 018940 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV-ANLSLY 180 (348)
Q Consensus 102 i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~i-g~~~~~ 180 (348)
++...+.. .+ ..+...... ...+.+.+.+.......++..+..+ +++|++..++.+....+ |..+++
T Consensus 333 ~~~~~~~~--~~-----~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~g~~~~~ 400 (451)
T 1pw4_A 333 IATIVYWM--NP-----AGNPTVDMI----CMIVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAAS 400 (451)
T ss_dssp HHHHHTTS--CC-----TTCHHHHHH----HHHHHHHHHTHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--hc-----ccCHHHHHH----HHHHHHHHHhchHHHHHHHHHHHhc-hhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44433221 11 112221111 1124555555656666778888874 57899999999988888 888877
Q ss_pred HHHHHHHHhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 018940 181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSR 223 (348)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~ 223 (348)
.+.+.+.+ ..||+..+++.+++.++..++.+..
T Consensus 401 ~~~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 401 AIVGYTVD----------FFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHH----------SSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----------hcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 76655543 2357777777766666655555443
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.06 E-value=5.6e-09 Score=99.11 Aligned_cols=162 Identities=11% Similarity=0.040 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhh-C---CChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCccc
Q 018940 42 CWFTYLLLFLTDI-G---LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (348)
Q Consensus 42 ~~~~~l~~~~~~~-g---~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~ 117 (348)
.....+|.|+++. + .+..+.|.+.++..+...++.++.|+++||+||||.++ .+....++....+.. .
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~-~~~~~~~~~~~~~~~--~----- 309 (417)
T 2cfq_A 238 VFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALL-LAGTIMSVRIIGSSF--A----- 309 (417)
T ss_dssp HHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHHTT--C-----
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHH-HHHHHHHHHHHHHHH--h-----
Confidence 3334567777664 4 33556788888888888999999999999999988754 455555555432211 1
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCccc
Q 018940 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC-RNAFTMVANLSLYAIAFIVFSVSTAKTHA 196 (348)
Q Consensus 118 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~-~~~~~~ig~~~~~~~~~~~~~~~~~~~~~ 196 (348)
.+.....+. ..+.+.+.+....+..++.+|..| ++.|+...+. .+....+|+.+++.+.+.+.+
T Consensus 310 --~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~-------- 374 (417)
T 2cfq_A 310 --TSALEVVIL----KTLHMFEVPFLLVGCFKYITSQFE-VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE-------- 374 (417)
T ss_dssp --CSHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH--------
T ss_pred --ccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH--------
Confidence 122211111 113344455555556678888874 5678887776 355666777766655544432
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 018940 197 DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR 228 (348)
Q Consensus 197 ~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~~ 228 (348)
..|++..+.+.+++.++..++.+...||++
T Consensus 375 --~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 375 --SIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp --HSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred --hcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 346777777777777777766666667644
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.95 E-value=3.1e-08 Score=93.82 Aligned_cols=141 Identities=12% Similarity=-0.011 Sum_probs=92.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHH-HHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHH
Q 018940 29 YGSGHMLNDITAACWFTYLLLF-LTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (348)
Q Consensus 29 ~~~g~~~~~~~~~~~~~~l~~~-~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~ 106 (348)
..+..+...........+++.| +++. |.++.+.|.+.++..+...++.++.|+++||+||||.+. .+....++....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~-~~~~~~~~~~~~ 341 (438)
T 3o7q_A 263 AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLA-AYALIAMALCLI 341 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHH
Confidence 3344444444455666889999 8887 999999999999999999999999999999999988754 455555555543
Q ss_pred HhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018940 107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186 (348)
Q Consensus 107 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~ 186 (348)
... .+ +.. ..... .+.+++.+...+...++..+..+ ++|+...++.. ...+|+.+++.+.+.+
T Consensus 342 ~~~--~~-------~~~-~~~~~----~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~g~~~~~~~~g~l 404 (438)
T 3o7q_A 342 SAF--AG-------GHV-GLIAL----TLCSAFMSIQYPTIFSLGIKNLG--QDTKYGSSFIV-MTIIGGGIVTPVMGFV 404 (438)
T ss_dssp HHH--CC-------HHH-HHHHH----HHHHHHHTTHHHHHHHHHHSSCG--GGHHHHHHHHH-HTTHHHHHHHHHHHHH
T ss_pred HHH--cC-------CcH-HHHHH----HHHHHHHHHHHHHHHHHHHhhcc--ccccchhhHHH-HHHHHHHHHHHHHHHH
Confidence 321 11 111 21111 24556666666667777677664 34767666655 4456666655555444
Q ss_pred H
Q 018940 187 F 187 (348)
Q Consensus 187 ~ 187 (348)
.
T Consensus 405 ~ 405 (438)
T 3o7q_A 405 S 405 (438)
T ss_dssp H
T ss_pred H
Confidence 4
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.88 E-value=3.3e-08 Score=95.28 Aligned_cols=173 Identities=12% Similarity=-0.018 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHHHHHHHHHHhcCcCCCcccCccc
Q 018940 42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST 121 (348)
Q Consensus 42 ~~~~~l~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 121 (348)
.+..|.+.+.++.+.+.........+..+...+..++.+++.||+|||+.++ .+....+++...+...... ..+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~-~~~~~~~~~~~~l~~~~~~-----~~~ 368 (491)
T 4gc0_A 295 VVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQI-IGALGMAIGMFSLGTAFYT-----QAP 368 (491)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHH-HHHHHHHHHHHHHHHHHHT-----TCC
T ss_pred HHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhc-cchHHHHHHHHHHHHHHhc-----ccc
Confidence 3344555555556888877777778888889999999999999999998754 5555555554332110001 111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH-HhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhh
Q 018940 122 LKVETISYCVFAAIFNVGWAATQ-VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 200 (348)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (348)
.. ..+... .++..+++... .....+.+|+.| .+.|++..++.+..+.+++.+++.+.+.+...... ....
T Consensus 369 ~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~E~fP-t~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~----~~~~ 439 (491)
T 4gc0_A 369 GI-VALLSM---LFYVAAFAMSWGPVCWVLLSEIFP-NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL----VAHF 439 (491)
T ss_dssp HH-HHHHHH---HHHHHHHHTTTTHHHHHHHHHSSC-TTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH----HHHH
T ss_pred hH-HHHHHH---HHHHHHHHhHHHHHHHHHHHHhCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhh
Confidence 11 111111 12222233221 223467889885 57899999998888888888877664333221000 0123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 018940 201 QYRWIAYSSIFIGCCFVGIFLSRTEEPRL 229 (348)
Q Consensus 201 g~~~~~~i~~~i~~~~~ll~~~~~~e~~~ 229 (348)
++.+.++++++++++..++.++++||.+.
T Consensus 440 ~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 440 HNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 44556778888888888888899999654
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.85 E-value=3.2e-09 Score=102.50 Aligned_cols=173 Identities=9% Similarity=-0.141 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHH----HHHHHHHHHHHHHhcCc
Q 018940 37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG----AGSVLVAVSFSSVFGGC 111 (348)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~----~~~~~~~i~~~~l~~~~ 111 (348)
.........+++.|.++. +.+..+.+.+.....+...+..++.|+++||+|||++... .+....++++..+..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~-- 373 (491)
T 4aps_A 296 WAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAI-- 373 (491)
T ss_dssp HHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHH--
T ss_pred HHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH--
Confidence 333334456778888886 7776778888888899999999999999999999865321 344444444321110
Q ss_pred CCCcc--cCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018940 112 MPCRI--LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (348)
Q Consensus 112 ~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~~~~~ 189 (348)
.+... ....+..+.... ..+.+++.+...++..+++.|..| +++|+++.++.+....+|..+++.+. +.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~----~~l~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~i~~~~~----~~ 444 (491)
T 4aps_A 374 PGALYGTSGKVSPLWLVGS----WALVILGEMLISPVGLSVTTKLAP-KAFNSQMMSMWFLSSSVGSALNAQLV----TL 444 (491)
T ss_dssp HHHHCCCCTTCCTHHHHHH----HHHHHHHHHTTTTHHHHHHHHHTT-TTCSSSSTHHHHHHHHHHHHHHHHHG----GG
T ss_pred HHHhcCCCCCccHHHHHHH----HHHHHHHHHHHhHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 00000 001122222222 235667777666677788888875 57899999998888888877755432 22
Q ss_pred ccCCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 018940 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP 227 (348)
Q Consensus 190 ~~~~~~~~~~~g~~~~~~i~~~i~~~~~ll~~~~~~e~ 227 (348)
+. +.++.+.+.+++++.++..++.++..++.
T Consensus 445 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 445 YN-------AKSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp GG-------GSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred Hh-------cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 22444556666666666666665555553
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.18 E-value=5.2e-07 Score=83.67 Aligned_cols=141 Identities=13% Similarity=-0.004 Sum_probs=88.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHHHHHHHHhhhhhhHhhhcccCCchHHHHHHHHH-HHHHHH
Q 018940 28 YYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL-VAVSFS 105 (348)
Q Consensus 28 ~~~~g~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~~~~~i~~~i~~p~~G~l~Dr~Grrr~~i~~~~~~-~~i~~~ 105 (348)
...+..+...........++|.|+++. |.++.+.|.+.+...+...++.++.|++.||+|| +. ..+... ...+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~~--~~~~~~~~~~~~~ 279 (375)
T 2gfp_A 203 CYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-LM--WQSVICCLLAGLL 279 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-HH--HHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHH
Confidence 334444444555556667788888885 9999999999999999999999999999999987 22 222222 111110
Q ss_pred HHhcCcCCCcccCcccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Q 018940 106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182 (348)
Q Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~ 182 (348)
... .+ .....+.+ . ..+...+.+++.+...+...++..|..| |+|++..+..+....+|..+++.+
T Consensus 280 ~~~---~~--~~~~~~~~-~---~~~~~~l~g~~~~~~~~~~~~~~~~~~p--~~~g~~~g~~~~~~~~g~~~~~~~ 345 (375)
T 2gfp_A 280 MWI---PD--WFGVMNVW-T---LLVPAALFFFGAGMLFPLATSGAMEPFP--FLAGTAGALVGGLQNIGSGVLASL 345 (375)
T ss_dssp SSH---HH--HHHHHHHH-H---HHHHHHHHHHHHHHTSSTTHHHHHTHHH--HHHHHHHHHHHHHHHHHHHCCSTT
T ss_pred HHH---Hh--hhccccHH-H---HHHHHHHHHHHHHHhhHHHHHHHHHhCC--cccchHHHHHHHHHHHHHHHHHHH
Confidence 000 00 00000111 1 1112235667777777777788888764 689999999888877776665443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.15 E-value=8.4e-06 Score=79.07 Aligned_cols=119 Identities=14% Similarity=0.105 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhHhhh----cccCCc---hHHHHHHHHHHHHHHHHHhcCcCCCccc--CcccchhHHHHHH
Q 018940 60 GAAAVMLSGQIADGFATIFIGELI----DRFGHF---KIWHGAGSVLVAVSFSSVFGGCMPCRIL--STSTLKVETISYC 130 (348)
Q Consensus 60 ~~g~i~~~~~i~~~i~~p~~G~l~----Dr~Grr---r~~i~~~~~~~~i~~~~l~~~~~~~~~~--~~~~~~~~~~~~~ 130 (348)
..+.+.....+...+..++.|++. ||.||| +..+..+....++++..+.. .+.... ...+..+....+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~- 412 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGT--IQLMMDGGSALSIFWQILPY- 412 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTT--TTTTTTTTCCCCSHHHHHHH-
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHH--HHHHhcCCCCcCHHHHHHHH-
Confidence 355565565666677788888875 555432 12344555555555432211 110000 011222222222
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 018940 131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI 185 (348)
Q Consensus 131 l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~R~~~~~~~~~~~~ig~~~~~~~~~~ 185 (348)
.+.+++.+...++..+++.+..| +++|++..++.+....+|+.+++.+.+.
T Consensus 413 ---~l~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~g~~~~g~ 463 (524)
T 2xut_A 413 ---ALLTFGEVLVSATGLEFAYSQAP-KAMKGTIMSFWTLSVTVGNLWVLLANVS 463 (524)
T ss_dssp ---HHHHHHHHHHHHHHTTTHHHHCC-TTCCTTTHHHHGGGHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhCc-HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777888888988885 5789999999988888888887665443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=32.66 E-value=12 Score=19.09 Aligned_cols=12 Identities=42% Similarity=0.913 Sum_probs=10.0
Q ss_pred hhHhhhcccCCc
Q 018940 78 FIGELIDRFGHF 89 (348)
Q Consensus 78 ~~G~l~Dr~Grr 89 (348)
++|.+..||||+
T Consensus 2 lfgklikkfgrk 13 (26)
T 2g9p_A 2 LFGKLIKKFGRK 13 (26)
T ss_dssp HHHHHHHHHTSH
T ss_pred cHHHHHHHHhHH
Confidence 478899999986
Done!