Query 018941
Match_columns 348
No_of_seqs 128 out of 1133
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:25:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3us8_A Isocitrate dehydrogenas 100.0 1E-108 4E-113 824.3 24.8 344 2-347 23-366 (427)
2 1lwd_A Isocitrate dehydrogenas 100.0 1E-105 4E-110 801.6 24.8 345 2-347 1-345 (413)
3 4aoy_A Isocitrate dehydrogenas 100.0 4E-105 1E-109 793.6 24.8 342 3-347 1-342 (402)
4 2uxq_A Isocitrate dehydrogenas 100.0 2E-104 7E-109 790.0 24.1 340 5-347 2-341 (402)
5 1zor_A Isocitrate dehydrogenas 100.0 2E-103 5E-108 783.4 24.3 334 3-347 1-339 (399)
6 1x0l_A Homoisocitrate dehydrog 100.0 1E-101 4E-106 752.2 27.7 285 10-347 2-289 (333)
7 3u1h_A 3-isopropylmalate dehyd 100.0 2E-101 7E-106 761.1 25.1 297 7-347 21-331 (390)
8 1w0d_A 3-isopropylmalate dehyd 100.0 3E-101 1E-105 750.9 24.9 294 10-347 2-301 (337)
9 3ty4_A Probable homoisocitrate 100.0 3E-100 9E-105 749.9 27.6 292 9-347 10-322 (366)
10 3flk_A Tartrate dehydrogenase/ 100.0 2E-100 6E-105 751.7 25.1 297 8-347 4-314 (364)
11 3udu_A 3-isopropylmalate dehyd 100.0 1E-100 3E-105 751.6 21.7 291 10-347 7-312 (361)
12 3vmk_A 3-isopropylmalate dehyd 100.0 3E-100 1E-104 751.3 24.0 298 8-347 12-324 (375)
13 2y3z_A 3-isopropylmalate dehyd 100.0 7E-100 3E-104 745.5 24.3 290 10-347 4-307 (359)
14 3dms_A Isocitrate dehydrogenas 100.0 2.7E-99 9E-104 756.4 28.1 316 7-347 34-379 (427)
15 3r8w_A 3-isopropylmalate dehyd 100.0 2E-99 7E-104 750.7 23.9 299 7-347 40-352 (405)
16 2d1c_A Isocitrate dehydrogenas 100.0 1.2E-98 4E-103 758.0 29.8 292 3-347 9-310 (496)
17 1cnz_A IPMDH, IMDH, protein (3 100.0 3.1E-99 1E-103 742.9 23.8 296 10-347 5-315 (363)
18 3blx_B Isocitrate dehydrogenas 100.0 1.8E-99 6E-104 741.5 21.3 285 9-347 21-311 (354)
19 2e0c_A 409AA long hypothetical 100.0 9.6E-99 3E-103 749.4 26.4 311 4-347 17-360 (409)
20 2iv0_A Isocitrate dehydrogenas 100.0 7.8E-99 3E-103 750.2 25.1 305 10-347 28-363 (412)
21 1vlc_A 3-isopropylmalate dehyd 100.0 6.7E-99 2E-103 739.8 23.6 290 10-347 13-317 (366)
22 3blx_A Isocitrate dehydrogenas 100.0 4E-99 1E-103 737.9 21.1 285 8-347 16-304 (349)
23 1wpw_A 3-isopropylmalate dehyd 100.0 4.3E-98 1E-102 727.9 27.5 279 10-347 2-286 (336)
24 2qfy_A Isocitrate dehydrogenas 100.0 1.4E-98 5E-103 752.6 22.9 344 3-347 16-361 (427)
25 2d4v_A Isocitrate dehydrogenas 100.0 1.1E-97 4E-102 744.7 28.6 307 10-347 27-382 (429)
26 1hqs_A Isocitrate dehydrogenas 100.0 5.9E-98 2E-102 746.0 26.2 308 10-347 20-375 (423)
27 1a05_A IPMDH, IMDH, 3-isopropy 100.0 3.4E-98 1E-102 734.8 22.8 294 10-347 2-309 (358)
28 1tyo_A Isocitrate dehydrogenas 100.0 1.3E-97 4E-102 745.2 25.5 308 10-347 36-374 (435)
29 2hi1_A 4-hydroxythreonine-4-ph 94.7 0.017 5.8E-07 55.9 3.5 141 184-343 180-328 (330)
30 4aty_A Terephthalate 1,2-CIS-d 94.7 0.017 5.9E-07 56.1 3.6 136 184-343 195-340 (349)
31 1yxo_A 4-hydroxythreonine-4-ph 94.6 0.017 5.8E-07 55.8 3.2 142 184-344 173-323 (328)
32 3lxy_A 4-hydroxythreonine-4-ph 94.5 0.018 6.3E-07 55.7 3.2 140 184-343 178-327 (334)
33 3tsn_A 4-hydroxythreonine-4-ph 93.9 0.033 1.1E-06 54.5 3.6 79 251-344 282-363 (367)
34 2b0t_A NADP isocitrate dehydro 92.9 0.61 2.1E-05 48.0 10.9 155 180-347 451-615 (738)
35 1itw_A Isocitrate dehydrogenas 92.9 0.61 2.1E-05 48.0 10.9 155 180-347 455-619 (741)
36 2qfy_A Isocitrate dehydrogenas 74.1 0.56 1.9E-05 46.7 -0.5 16 127-142 156-171 (427)
37 3u7r_A NADPH-dependent FMN red 41.6 65 0.0022 27.9 7.0 84 8-108 1-93 (190)
38 1yxo_A 4-hydroxythreonine-4-ph 40.0 16 0.00056 35.0 3.0 21 8-28 1-23 (328)
39 2hi1_A 4-hydroxythreonine-4-ph 30.2 31 0.0011 33.1 3.2 20 10-29 7-28 (330)
40 4aty_A Terephthalate 1,2-CIS-d 29.6 32 0.0011 32.9 3.3 20 10-29 9-30 (349)
41 3s3t_A Nucleotide-binding prot 29.0 38 0.0013 26.4 3.2 27 188-214 15-41 (146)
42 3hgm_A Universal stress protei 27.6 42 0.0014 26.1 3.2 27 188-214 12-38 (147)
43 3fg9_A Protein of universal st 27.2 51 0.0018 26.2 3.7 26 188-213 27-52 (156)
44 3dlo_A Universal stress protei 25.7 56 0.0019 26.4 3.7 26 188-213 35-60 (155)
45 3lxy_A 4-hydroxythreonine-4-ph 24.7 34 0.0012 32.8 2.4 19 10-28 9-29 (334)
46 2z08_A Universal stress protei 24.5 52 0.0018 25.5 3.2 26 188-213 12-37 (137)
47 3rpe_A MDAB, modulator of drug 22.5 1.1E+02 0.0038 27.1 5.2 62 4-75 21-90 (218)
48 3tnj_A Universal stress protei 22.1 54 0.0019 25.7 2.8 25 189-213 17-41 (150)
49 2a2l_A Unknown; structural gen 21.4 1.3E+02 0.0044 24.9 5.1 43 183-225 9-56 (145)
50 3idf_A USP-like protein; unive 21.3 58 0.002 25.1 2.8 27 188-214 11-38 (138)
No 1
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=100.00 E-value=1e-108 Score=824.34 Aligned_cols=344 Identities=72% Similarity=1.182 Sum_probs=309.4
Q ss_pred ccccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCC
Q 018941 2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPD 81 (348)
Q Consensus 2 ~~~~~~m~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~ 81 (348)
.|+||||+++|++|||||||||||+++++++..++++|+|+++++|.+++++||+++|++++++|+++||+||||++||.
T Consensus 23 ~~~~i~~~~~I~vipGDGIGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~ 102 (427)
T 3us8_A 23 MMAKIKVANPVVELDGDEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPD 102 (427)
T ss_dssp --CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCC
T ss_pred ccccccccceEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCC
Confidence 47899999999999999999999999998777778999999999999999999999999999999999999999999998
Q ss_pred chhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCCCCCEEEEecccCccccccceeeeCCCceeeeeecC
Q 018941 82 EARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPE 161 (348)
Q Consensus 82 ~~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~ 161 (348)
..+++++.+.++|+|+|++|||+||||+|+||+.++++|++.+++++|||||||||||+|+|+|+++.+++..++.|.++
T Consensus 103 ~~~~~e~~l~~~~~s~n~~LRk~LdlyanvRPv~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~l~~~~~ 182 (427)
T 3us8_A 103 EGRVEEFKLKKMWKSPNGTIRNILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGE 182 (427)
T ss_dssp HHHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEET
T ss_pred ccccccccccccccCchHHHHHHhCCeEEecceeccCCCCCCCCCCCCEEEEEeCCCCccCCceeEEecCCcceeeeecc
Confidence 76666777778899999999999999999999866899988877889999999999999999999877677666666655
Q ss_pred CCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccc
Q 018941 162 GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241 (348)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~ 241 (348)
.| ......++++++ .+++++++|||+++|||+|+||+||++|++|||+|||+||||.|||+|+++|+|||+++|.++|
T Consensus 183 ~G-~~~~~~~~~~~~-~~va~~~~~T~~~~eRiar~AFe~A~~r~kkVt~v~KaNIlk~tdglfr~~~~eva~~eYp~~~ 260 (427)
T 3us8_A 183 DG-QTIEHDVYDAPG-AGVALAMYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQF 260 (427)
T ss_dssp TS-CEEEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHH
T ss_pred cc-ccccccccccCC-CcEEEEEeeCHHHHHHHHHHHHHHHHHcCCcEEEEECcccchhhhhHHHHHHHHHHHHhCcccc
Confidence 44 111112223332 3466788899999999999999999999999999999999999999999999999955997777
Q ss_pred cCCCceEeeehHHHHHHHHHhCCCCcEEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCccc
Q 018941 242 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVH 321 (348)
Q Consensus 242 ~~p~I~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~~ 321 (348)
.+|+|+++++|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++.++||||+|||||||++++
T Consensus 261 ~~~~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~a~fEp~HGSAPd~~~~~ 340 (427)
T 3us8_A 261 KAEKLWYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQH 340 (427)
T ss_dssp HHTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHSCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHH
T ss_pred CCCCeEEEEEEHHHHHHHHhhCCCCcEEEeCCcCCcHHHHHHHHhcCChhhCceeEECCCCCeEEEeCCCCCcCCccchh
Confidence 77899999999999999999999999999999999999999999999999999999998753499999999999999999
Q ss_pred ccCCCCCcChhHHHHHHHHHHHhhhc
Q 018941 322 QKGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 322 iaGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
|||||++|||+|+|||++|||+|||+
T Consensus 341 iAGk~i~ANP~A~IlS~ammL~hlG~ 366 (427)
T 3us8_A 341 QKGEETSTNSIASIFAWTRGLAHRAK 366 (427)
T ss_dssp HTTCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCceeCHHHHHHHHHHHHHHhcc
Confidence 99999889999999999999999985
No 2
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=100.00 E-value=1e-105 Score=801.64 Aligned_cols=345 Identities=74% Similarity=1.223 Sum_probs=300.9
Q ss_pred ccccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCC
Q 018941 2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPD 81 (348)
Q Consensus 2 ~~~~~~m~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~ 81 (348)
+.+||||+++|++|||||||||||+++++++..++++|+|+++++|.+++++||+++|++++++|+++||+||||+++|.
T Consensus 1 ~~~~i~~~~~i~~l~GDgiGpei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~LkGav~tP~ 80 (413)
T 1lwd_A 1 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPD 80 (413)
T ss_dssp CCCCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCC
T ss_pred CCCcceecccEEEecCCChhHHHHHHHHHHHHhCCCCeEEEEEecCHHHHhccCCcCcHHHHHHHHHCCEEEECCccCCC
Confidence 45899999999999999999999999998887778999999999999999999999999999999999999999999997
Q ss_pred chhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCCCCCEEEEecccCccccccceeeeCCCceeeeeecC
Q 018941 82 EARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPE 161 (348)
Q Consensus 82 ~~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~ 161 (348)
..+.+++.|.+.|+|+|++|||+||||+|+||++++++|++.++++.||+|+||||||+|+++|+.+.++|..+..|.+.
T Consensus 81 ~~~~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divIvRe~t~g~Y~g~d~~~~~e~~~~~~~~~~ 160 (413)
T 1lwd_A 81 EARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPK 160 (413)
T ss_dssp HHHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEET
T ss_pred cccCccccccccccCccHHHHHhcCCEEEEeeeeccCCCCCCCCCCCceEEEecccCCccCCceeEeccCCcceeeEecc
Confidence 54444443434799999999999999999999977889887777789999999999999999999987777656667654
Q ss_pred CCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccc
Q 018941 162 GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241 (348)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~ 241 (348)
.|........+.++ +++++++++||+++++||+|+||+||++|++|||+|||+|||+.|+|+|+++|+|||+++|.++|
T Consensus 161 ~g~~~~~~~~~~~~-~~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~ 239 (413)
T 1lwd_A 161 DGSSAKQWEVYNFP-AGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDF 239 (413)
T ss_dssp TCCCCEEEEEEEES-SCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCcccccccccccC-CCcEEEEEEEcHHHHHHHHHHHHHHHHHhCCceEEEECCcchhhHHHHHHHHHHHHHHHhCCCcc
Confidence 44211111112222 14677888999999999999999999999889999999999999999999999999855994444
Q ss_pred cCCCceEeeehHHHHHHHHHhCCCCcEEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCccc
Q 018941 242 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVH 321 (348)
Q Consensus 242 ~~p~I~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~~ 321 (348)
.+.+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++.++||||+||||||+++++
T Consensus 240 ~~~~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpvHGSAPdi~~~~ 319 (413)
T 1lwd_A 240 DKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYREH 319 (413)
T ss_dssp HHTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHHHH
T ss_pred cCCeEEEEEEEHHHHHHHHhcCCCceEEEecccccchHHHHHHhhcCCccccccceeCCCCCceEEeCCCCChhhhhhhh
Confidence 43349999999999999999999999999999999999999999999999999999998763489999999999955555
Q ss_pred ccCCCCCcChhHHHHHHHHHHHhhhc
Q 018941 322 QKGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 322 iaGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
|||||++|||+|+|||++|||+|||+
T Consensus 320 ~aGk~~~ANP~A~IlS~ammL~~lg~ 345 (413)
T 1lwd_A 320 QKGRPTSTNPIASIFAWTRGLEHRGK 345 (413)
T ss_dssp HTTCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCccChHHHHHHHHHHHHHcCC
Confidence 59999559999999999999999985
No 3
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=100.00 E-value=3.6e-105 Score=793.60 Aligned_cols=342 Identities=56% Similarity=0.952 Sum_probs=285.8
Q ss_pred cccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 018941 3 FQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (348)
Q Consensus 3 ~~~~~m~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~ 82 (348)
|+||||+++|++|||||||||+|+.+++++..++++|+|+++++|.+++++||+++|++++++|+++||+||||++||..
T Consensus 1 ~~~i~~~~~i~~i~GDei~~e~~~~i~~v~~~~~~~i~~~~~d~G~~~~~~tg~~lp~etl~aik~~~v~lkGa~~tP~~ 80 (402)
T 4aoy_A 1 MSKIKMKVPLVEMDGDEMTRIIWRLIKENLLEPYIELNTEYYDLGLENRDKTEDQVTIDAARAIQKYGVGVKCATITPNA 80 (402)
T ss_dssp -CCEECSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHHTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred CCcccccCcEEEECCCchHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECcccCCCc
Confidence 68999999999999999999999999988888899999999999999999999999999999999999999999999987
Q ss_pred hhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCCCCCEEEEecccCccccccceeeeCCCceeeeeecCC
Q 018941 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEG 162 (348)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~ 162 (348)
.+++++.|.++|+|+|++|||.||||+|+||+.++++|++.++|++|||||||||||+|+|+||+...++..++.|.+..
T Consensus 81 ~~~~~~~l~~~~~s~n~~LR~~Ldlyan~rPv~~~~i~~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~~~~~~~~ 160 (402)
T 4aoy_A 81 QRVEEYNLKKMWKSPNGTIRAILDGTVFRAPIVVNSIKPFVKGWKKPISIARHAYGDVYKNVEYYVPSAGKAELVFTSEN 160 (402)
T ss_dssp HHHHHTTCSSCCCCHHHHHHHHHTCEEEEEECCCTTSCCSBTTCCBCCEEEEC------CCEEEEECSCEEEEEEEEETT
T ss_pred cccccccccccccChHHHHHHHhCCeEEeeeEeccCCCCcCCCCCCCEEEEEeccCCeecCceeeccCccceeeeeeccC
Confidence 66666667778999999999999999999998667888776677789999999999999999998766776666676655
Q ss_pred CCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhcccc
Q 018941 163 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFE 242 (348)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~ 242 (348)
|.. ...++.++++ .++++++++|+++++||+|+||+||++|+++||+|||+|||+.|||+|+++|+|||+++|.++|.
T Consensus 161 g~~-~~~~~~~~~~-~gv~~~~~~t~~~~eRiar~AF~~A~~~~~~vt~v~KaNilk~tdglf~~~~~eva~~eyp~~~~ 238 (402)
T 4aoy_A 161 GEV-SRQTIHEFDG-PGVIMGMHNTDKSIRSFARACFNYALDMNQDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFE 238 (402)
T ss_dssp SCE-EEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred Ccc-cccccccccC-CeeEEEEEecHHHHHHHHHHHHHHHHHcCCcEEEEECCccchhhhhHHHHHHHHHHHHhCccccc
Confidence 532 1112223322 46778899999999999999999999999999999999999999999999999999669977777
Q ss_pred CCCceEeeehHHHHHHHHHhCCCCcEEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCcccc
Q 018941 243 AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQ 322 (348)
Q Consensus 243 ~p~I~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~~i 322 (348)
+|+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++ .+||||+|||||||++++|
T Consensus 239 ~~~i~~~~~~vD~~~~~lv~~P~~fVivt~Nl~GDIlSD~~A~l~GslGl~psanig~~~-~~~fEp~HGSApd~~~~~i 317 (402)
T 4aoy_A 239 AKNLQYFYTLIDDAVARIIRSEGGMVWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDG-KYEFEAAHGTVTRHYYKHL 317 (402)
T ss_dssp HTTCCEEEEEHHHHHHHHHTSCBCSEEECCC-CHHHHHHHHHHHHSCTTSEEEEEECTTC-CEEEEC-------------
T ss_pred CCCeEEEEEEHHHHHHHHhhCCCCcEEEECCcchHHHHHHHHHhcCchhhccccccCCCC-ceEEeeccCCccccchhhc
Confidence 779999999999999999999999999999999999999999999999999999999876 5999999999999999999
Q ss_pred cCCCCCcChhHHHHHHHHHHHhhhc
Q 018941 323 KGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 323 aGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
||||++|||+|+|||++|||+|+|+
T Consensus 318 aGk~~~aNP~A~Ils~a~mL~~~g~ 342 (402)
T 4aoy_A 318 KGEETSTNSMATIFAWTGALKKRGE 342 (402)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCcCcCcHHHHHHHHHHHHHhcc
Confidence 9999779999999999999999985
No 4
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=100.00 E-value=2e-104 Score=789.99 Aligned_cols=340 Identities=50% Similarity=0.859 Sum_probs=293.8
Q ss_pred cccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchh
Q 018941 5 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (348)
Q Consensus 5 ~~~m~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~ 84 (348)
||||+++|++|||||||||||+++++++..++++|+|+++++|.+++++||+++|++++++|+++||+||||++||...+
T Consensus 2 ~~~~~~~i~~i~GDgig~ei~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~LkGav~tP~~~~ 81 (402)
T 2uxq_A 2 KIQMKTPLVELDGDEMTRVLWPLIKDKLLLPFIDLQTEYYDLGIEERDRTNDQITIDAAEAIKKYGVGVKNATITPNQDR 81 (402)
T ss_dssp CBCCSSCEEEEECCHHHHHHHHHHHHHHTTTTBCCCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHHH
T ss_pred ceeeecceEEecCCCccHHHHHHHHHHHHhCCCCeEEEEEecCHHHHHhhCCcCCHHHHHHHHhCCEEEECCccCCCccc
Confidence 69999999999999999999999998888889999999999999999999999999999999999999999999997544
Q ss_pred hhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCCCCCEEEEecccCccccccceeeeCCCceeeeeecCCCC
Q 018941 85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKD 164 (348)
Q Consensus 85 ~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~g~ 164 (348)
.+++.+.++|+|+|++|||+||||+|+||++++++|++.+++++||||+||||||+|++.|+++.++|..+..|.++.|.
T Consensus 82 ~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divIvRE~teg~Y~g~e~~~~~~g~~~~~~~~~~g~ 161 (402)
T 2uxq_A 82 VEEYGLKEQWKSPNATVRAMLDGTVFRKPIMVKNIKPSVRSWQKPIVVGRHAYGDFYKNAEIFAEAGGKLEIVVTDKNGK 161 (402)
T ss_dssp HHHHTCSSCCCCHHHHHHHHHCCEEEEEECCCTTCCCSBTTCCSCCEEEEECSCGGGGCEEEEETTCEEEEEEEECTTSC
T ss_pred CccccccccccCchHHHHHHhCCeEEEEEEEcCCCCCCCCCCCCCeEEEeccCCCcccCcceeeccCCcceeeeeccCCc
Confidence 44444445799999999999999999999977888877666779999999999999999999875555444445443331
Q ss_pred ccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCC
Q 018941 165 EKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAA 244 (348)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~~p 244 (348)
. .+...+.++. ++++++++||++++|||+|+||+||++|++|||+|||+|||+.|+|+|+++|+|||+++|.++|.+.
T Consensus 162 ~-~~~~~~~~~~-~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNVlk~sdglf~~~~~eva~~eypd~~~~~ 239 (402)
T 2uxq_A 162 E-TRQTIMEVDE-PAIVQGIHNTVASIGHFARACFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAA 239 (402)
T ss_dssp E-EEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred c-ccccccccCC-CceEEEEEECHHHHHHHHHHHHHHHHHcCCcEEEEECCCcchhhHHHHHHHHHHHHHHhCCCcccCC
Confidence 0 1111112221 4677788899999999999999999999889999999999999999999999999855992222222
Q ss_pred CceEeeehHHHHHHHHHhCCCCcEEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCcccccC
Q 018941 245 GIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKG 324 (348)
Q Consensus 245 ~I~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~~iaG 324 (348)
+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++ .+||||+||||||+++++|||
T Consensus 240 ~I~~~~~~vD~~~mqlv~~P~~fVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~-~~lfEpvHGSAPdi~~~~~aG 318 (402)
T 2uxq_A 240 GIEYFYTLIDDVVARMMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYG-YFEYEAAHGTVQRHYYQHLKG 318 (402)
T ss_dssp TCCEEEEEHHHHHHHHTTCCCCSEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTS-CEEEECCSCCCHHHHHHHHTT
T ss_pred eEEEEEEEHHHHHHHHccCCCceEEEEcccchHHHHHHHHHhcCCccccccceecCCC-CeEEeCCCCChhhhhhhhhcC
Confidence 2999999999999999999999999999999999999999999999999999999876 489999999999955555599
Q ss_pred CCCCcChhHHHHHHHHHHHhhhc
Q 018941 325 GETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 325 k~i~ANP~a~IlS~ammL~~lg~ 347 (348)
||++|||+|+|||++|||+|||+
T Consensus 319 k~~~ANP~A~IlS~ammL~~lg~ 341 (402)
T 2uxq_A 319 ERTSTNPVALIYAWTGALRKRGE 341 (402)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCcccCcHHHHHHHHHHHHHhCc
Confidence 99449999999999999999985
No 5
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-103 Score=783.36 Aligned_cols=334 Identities=55% Similarity=0.938 Sum_probs=296.2
Q ss_pred cccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 018941 3 FQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (348)
Q Consensus 3 ~~~~~m~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~ 82 (348)
|+||+|+++|++|||||||||||+++++++..++++|+|+++++|.+++++||+++|++++++|+++||+||||+++|..
T Consensus 1 ~~~~~~~~~I~~l~GDgiG~ei~~~v~~~l~~~~~~~~~~~~~~G~~~~~~~g~~lp~etl~~ik~~da~lkGav~tP~~ 80 (399)
T 1zor_A 1 MEKVKVKNPIVELDGDEMARVMWKMIKEKLILPYLDIQLVYFDLGIKKRDETDDQITIEAAKAIKKYGVGVKCATITPDA 80 (399)
T ss_dssp CCCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred CCcccccccEEEecCCcccHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhccCCcCcHHHHHHHHHCCEEEEcCccCCCc
Confidence 57999999999999999999999999988888899999999999999999999999999999999999999999999975
Q ss_pred hhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCCCCCEEEEecccCccccccceeeeCCCceeeeeecCC
Q 018941 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEG 162 (348)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~ 162 (348)
.+.+++.|.++|+|+|++|||+||||+|+||++++++|++.++++.||+|+||||||+|+++++.+.++++.+..|.++.
T Consensus 81 ~~~~~~~~~~~~~s~~l~LR~~ldlyan~RPv~~~~~~~~~~~~~~divi~Re~t~g~Y~g~d~~~~~e~t~~~~y~~e~ 160 (399)
T 1zor_A 81 ERVKEYNLKKAWKSPNATIRAYLDGTVFRKPIMVKNVPPLVKRWKKPIIIGRHAYGDIYNAVEAKVEGPAEVELVVRNKE 160 (399)
T ss_dssp HHHHHHTCSSCCCCHHHHHHHHHTCEEEEEECCBTTBCCSBTTCCSCCEEEECCSSGGGGCEEEEECSSEEEEEEEESSS
T ss_pred ccCccccccccccCchHHHHHHhCCEEEEEEeecCCCCCcccCcCccceeeecccCCCcCCceeEecCCCcceeeEeccc
Confidence 43334334347899999999999999999999878888777767799999999999999999998777776555666421
Q ss_pred CCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHh---hhhc
Q 018941 163 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA---NWKS 239 (348)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~k---ey~~ 239 (348)
+ .+....++++ ++++++++||+++++||+|+||+||++|++|||+|||+|||+.|+|+|+++|+|||++ +|
T Consensus 161 ~---~~~~~~~~~~-~~~~~~~~~T~~~~eRiar~AFe~A~~r~~kVt~v~KaNvlk~sdglf~~~~~eva~~~~~~y-- 234 (399)
T 1zor_A 161 N---KTLLVHKFEG-NGVVMAMHNLEKSIRSFAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVDKRKEEL-- 234 (399)
T ss_dssp C---EEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTCTTHHHHHHHHHHHHHHHTHHHH--
T ss_pred c---ccceeeccCC-ceEEEEEEecHHHHHHHHHHHHHHHHHhCCeEEEEECcccHHHHHHHHHHHHHHHHHhhcccC--
Confidence 1 0111122222 4677788899999999999999999999889999999999999999999999999842 77
Q ss_pred cccCC--CceEeeehHHHHHHHHHhCCCCcEEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCC
Q 018941 240 KFEAA--GIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRH 317 (348)
Q Consensus 240 ~~~~p--~I~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~ 317 (348)
| +|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++ .+||||+||||||+
T Consensus 235 ----p~~~I~~~~~~vD~~~mqlv~~P~~fVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~-~~~fEpvHGSAPdi 309 (399)
T 1zor_A 235 ----EKAGVNYRYMLIDDAAAQILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDG-VYEFEAAHGTVRRH 309 (399)
T ss_dssp ----HHTTCCEEEEEHHHHHHHHHHSCCCSEEEECHHHHHHHHHHHHHHHCCGGGEEEEEECTTC-CEEEEESSCCCHHH
T ss_pred ----CCCcEEEEEEEHHHHHHHhccCCCceEEEEccchHHHHHHHHHHhcCCccccceeEecCCC-CeEEeCCCCccccc
Confidence 8 5999999999999999999999999999999999999999999999999999999876 38999999999998
Q ss_pred CcccccCCCCCcChhHHHHHHHHHHHhhhc
Q 018941 318 YRVHQKGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 318 ~~~~iaGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
++++|||||++|||+|+|||++|||+|||+
T Consensus 310 ~~~~iaGk~~~ANP~A~IlS~ammL~~lg~ 339 (399)
T 1zor_A 310 YYRYLKGEKTSTNPTASIFAWTGAIRKRGE 339 (399)
T ss_dssp HHHHTTTCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred chhhhcCCCCccCcHHHHHHHHHHHHhcCc
Confidence 888889999449999999999999999984
No 6
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=100.00 E-value=1.2e-101 Score=752.19 Aligned_cols=285 Identities=18% Similarity=0.172 Sum_probs=263.2
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhhhHHH
Q 018941 10 NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (348)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~~~~~ 89 (348)
++|++|||||||||||+++++++.+.+++|+|+++++|+++++++|+++|++++++|+++|++||||+++|....
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~~~----- 76 (333)
T 1x0l_A 2 YRICLIEGDGIGHEVIPAARRVLEATGLPLEFVEAEAGWETFERRGTSVPEETVEKILSCHATLFGAATSPTRKV----- 76 (333)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHTTTCCEEEEEECCSHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCCSSCC-----
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecchHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCCCCC-----
Confidence 689999999999999999997777778999999999999999999999999999999999999999999996321
Q ss_pred hhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCC-CCCEEEEecccCccccccceeeeCCCceeeeeecCCCCccch
Q 018941 90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTE 168 (348)
Q Consensus 90 l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~-~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~ 168 (348)
..|+|+|++|||+||||+|+||+ +.+| +.+++ ++|||||||||||+|+|.++. . +
T Consensus 77 --~~~~s~~l~lR~~ldlyan~RP~--~~~p-~~s~~~~vD~vivREnteg~Y~g~~~~-~-~----------------- 132 (333)
T 1x0l_A 77 --PGFFGAIRYLRRRLDLYANVRPA--KSRP-VPGSRPGVDLVIVRENTEGLYVEQERR-Y-L----------------- 132 (333)
T ss_dssp --TTCCCHHHHHHHHTTCCEEEEEE--ECCS-STTCCSSCEEEEEEECGGGTCCCCEEE-E-T-----------------
T ss_pred --cCccChhHHHHHHcCCEEEEEEE--eecc-CCCCCCCCCEEEEecCccceecccccc-C-C-----------------
Confidence 25889999999999999999998 5677 65554 479999999999999998764 1 1
Q ss_pred hhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCce
Q 018941 169 LEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIW 247 (348)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r-~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~~p~I~ 247 (348)
+.+.++++|||+++|||+|+||+||++| +||||+|||+|||+.++|+|+++|+||| ++| |+|+
T Consensus 133 ---------~~a~~~~~~T~~~~eRiar~AF~~A~~r~rkkvt~v~KaNvlk~t~glf~~~~~eva-~ey------p~I~ 196 (333)
T 1x0l_A 133 ---------DVAIADAVISKKASERIGRAALRIAEGRPRKTLHIAHKANVLPLTQGLFLDTVKEVA-KDF------PLVN 196 (333)
T ss_dssp ---------TEEEEEEEEEHHHHHHHHHHHHHHHHTSTTCEEEEEECTTTCTTHHHHHHHHHHHHH-TTC------TTSE
T ss_pred ---------CeEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEecCccchhhhHHHHHHHHHHH-HHC------CCce
Confidence 1245679999999999999999999999 5789999999999999999999999998 599 9999
Q ss_pred EeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCcccccCCC
Q 018941 248 YEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGE 326 (348)
Q Consensus 248 ~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~~iaGk~ 326 (348)
++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|++. +||||+|||||| |||||
T Consensus 197 ~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~psanig~~~--a~fEp~HGSAPd-----iaGk~ 269 (333)
T 1x0l_A 197 VQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGGLGLAPSGNIGDTT--AVFEPVHGSAPD-----IAGKG 269 (333)
T ss_dssp EEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECSSC--EEEEESSCCCGG-----GTTSS
T ss_pred EEEEEHHHHHHHHhhCcccceEEEEcCccchhHhHHHHhhcCCcccceeeEECCCc--eEEeCCCCChhh-----hcCCC
Confidence 99999999999999999999 99999999999999999999999999999999864 899999999999 99999
Q ss_pred CCcChhHHHHHHHHHHHhhhc
Q 018941 327 TSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 327 i~ANP~a~IlS~ammL~~lg~ 347 (348)
+ |||+|+|||++|||+|||+
T Consensus 270 i-ANP~A~IlS~ammL~~lg~ 289 (333)
T 1x0l_A 270 I-ANPTAAILSAAMMLDYLGE 289 (333)
T ss_dssp C-CCCHHHHHHHHHHHHHHTC
T ss_pred C-cCcHHHHHHHHHHHHhcCc
Confidence 9 9999999999999999985
No 7
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=100.00 E-value=2.1e-101 Score=761.07 Aligned_cols=297 Identities=19% Similarity=0.172 Sum_probs=257.2
Q ss_pred cccccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 018941 7 KVANPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (348)
Q Consensus 7 ~m~~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~ 82 (348)
+|+++|++|||||||||||+++++++.+. +++|+|+++++|+++++++|+++|++|+++|+++|++||||+++|..
T Consensus 21 ~M~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~daiL~Gavg~P~~ 100 (390)
T 3u1h_A 21 AMKKKIAVLPGDGIGPEVMEAAIEVLKAVAERFGHEFEFEYGLIGGAAIDEAGTPLPEETLDVCRGSDAILLGAVGGPKW 100 (390)
T ss_dssp ---CEEEEEEESTTHHHHHHHHHHHHHHHHHHHSCCCEEEECCCTHHHHHSSSSSSCHHHHHHHHTSSEEEEEECCCSTT
T ss_pred CccceEEEECCCccCHHHHHHHHHHHHHHHHhcCCCeEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCCc
Confidence 69999999999999999999999765443 79999999999999999999999999999999999999999999853
Q ss_pred hhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCC--CC------CCCCEEEEecccCccccccceeeeCCCce
Q 018941 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLI--PG------WTKPICIGRHAFGDQYRATDTVIQGPGKL 154 (348)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~--~~------~~~divivREnteG~Y~g~e~~~~~~g~~ 154 (348)
...+. . ..+.|+|++|||+||||||+||+ +.+|++. ++ .++|||||||||||+|+|.+++...++
T Consensus 101 ~~~~~-~--~~~~~~ll~LRk~ldLyANvRP~--k~~pg~~~~splk~~~~~~vD~vIVREnTeG~Y~g~~~~~~~~g-- 173 (390)
T 3u1h_A 101 DQNPS-E--LRPEKGLLGIRKGLDLFANLRPV--KVYDSLADASPLKKEVIEGVDLVIVRELTGGLYFGEPSERYEEG-- 173 (390)
T ss_dssp TSSCC-S--SSSSCCHHHHHHHTTEEEEEEEE--ECCGGGTTSSSBCHHHHSSCEEEEEEECSSBSCC-------CTT--
T ss_pred CCCCc-c--cCccchHHHHHHHhCCeEEEEEe--eccCCccccCCcccccccCCcEEEEeeCCCCeecCccccccCCC--
Confidence 21100 0 12347899999999999999998 5666654 32 257999999999999999877532111
Q ss_pred eeeeecCCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHH
Q 018941 155 KLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYE 234 (348)
Q Consensus 155 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~ 234 (348)
++.+.++++|||+++|||+|+||+||++|+||||+|||+||| .++|+|+++|+|||
T Consensus 174 ----------------------~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNVl-~t~glfr~~~~eva- 229 (390)
T 3u1h_A 174 ----------------------EEAAVDTLLYTREEIERIIRKAFELALTRKKKVTSVDKANVL-ESSRLWREVAEEVA- 229 (390)
T ss_dssp ----------------------CSEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTC-HHHHHHHHHHHHHH-
T ss_pred ----------------------CceEEEEEEecHHHHhHHHHHHHHHHHHcCCceEEEECCccc-ccchHHHHHHHHHH-
Confidence 023556799999999999999999999999999999999999 68999999999998
Q ss_pred hhhhccccCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcc
Q 018941 235 ANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGT 313 (348)
Q Consensus 235 key~~~~~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGS 313 (348)
++| |||+++++|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ ++||||+|||
T Consensus 230 ~eY------PdV~~~~~~VD~~amqLV~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~-~a~fEpvHGS 302 (390)
T 3u1h_A 230 KEY------PDVELEHMLVDNAAMQLIRNPRQFDVIVTENMFGDILSDEASMITGSLGMLPSASLSTDG-LGLYEPVHGS 302 (390)
T ss_dssp TTC------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSCTTTCEEEEEETTS-CEEEEESSCC
T ss_pred hHC------CCCeEEeeeHHHHHHHHHhCcccCcEEEecccchHHHHHHHHHhcCchhhcceeeecCCC-CeeEecCCCC
Confidence 599 999999999999999999999999 99999999999999999999999999999999865 6999999999
Q ss_pred cCCCCcccccCCCCCcChhHHHHHHHHHHHh-hhc
Q 018941 314 VTRHYRVHQKGGETSTNSIASIFAWSRGLAH-RYK 347 (348)
Q Consensus 314 Apd~~~~~iaGk~i~ANP~a~IlS~ammL~~-lg~ 347 (348)
||| |||||+ |||+|+|||++|||+| ||.
T Consensus 303 APD-----IAGk~i-ANP~A~IlS~amML~~~lg~ 331 (390)
T 3u1h_A 303 APD-----IAGKGI-ANPLATILSAAMMLRYSFGL 331 (390)
T ss_dssp CTT-----TTTSSC-SCTHHHHHHHHHHHHHHHCC
T ss_pred hhh-----hcCCCc-CCcHHHHHHHHHHHHHhCCC
Confidence 999 999999 9999999999999999 874
No 8
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=100.00 E-value=2.9e-101 Score=750.85 Aligned_cols=294 Identities=17% Similarity=0.165 Sum_probs=264.2
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhhhHHH
Q 018941 10 NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (348)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~~~~~ 89 (348)
++|++|||||||||||+++++++.+...+|+|+++++|++++++||+++|++|+++|+++|++||||+++|.... .
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~~P~~~~--~-- 77 (337)
T 1w0d_A 2 SKLAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYDLGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSVPS--G-- 77 (337)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHSTTCEEEECCCSHHHHHHHSCSSCHHHHHHHTTSSEEEEEECCCTTSCT--T--
T ss_pred cEEEEeCCCCcCHHHHHHHHHHHHHhcCCcEEEEEecchHHHhhhCCcCCHHHHHHHHHCCEEEECCccCCCCCC--c--
Confidence 689999999999999999997665444469999999999999999999999999999999999999999994211 1
Q ss_pred hhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCCC----CCEEEEecccCccccccceeeeCCCceeeeeecCCCCc
Q 018941 90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWT----KPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDE 165 (348)
Q Consensus 90 l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~~----~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~g~~ 165 (348)
+ .|+|+|++|||+||||+|+||+ +.+|++.++++ +|||||||||||+|+|.+++.. +|. +
T Consensus 78 ~--~~~s~~l~lR~~ldlyan~RP~--~~~pg~~s~l~~~~~~DivivREnteg~Y~g~e~~~~-~g~---------~-- 141 (337)
T 1w0d_A 78 V--LERGLLLRLRFELDHHINLRPA--RLYPGVASPLSGNPGIDFVVVREGTEGPYTGNGGAIR-VGT---------P-- 141 (337)
T ss_dssp H--HHHHTHHHHHHHTTCCEEEEEE--ECCTTCCCSBTTCCCCEEEEEEECSCSGGGCCEEEES-TTS---------T--
T ss_pred c--cccchHHHHHHHcCCEEEEEEe--ecCCCCCCcccCCCCCcEEEEecCCCCeecCCcceec-CCC---------C--
Confidence 1 3568899999999999999998 66777766553 7999999999999999987642 221 0
Q ss_pred cchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCC
Q 018941 166 KTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 245 (348)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~~p~ 245 (348)
++.+.++++|||+++|||+|+||+||++|+||||+|||+|||+.|+|+|+++|+||| ++| |+
T Consensus 142 -----------~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk~s~glf~~~~~eva-~ey------p~ 203 (337)
T 1w0d_A 142 -----------NEVATEVSVNTAFGVRRVVADAFERARRRRKHLTLVHKTNVLTFAGGLWLRTVDEVG-ECY------PD 203 (337)
T ss_dssp -----------TCEEEEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTSHHHHHHHHHHHHHHH-TTC------TT
T ss_pred -----------CCeEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCccchhhhHHHHHHHHHHH-HHC------Cc
Confidence 023556899999999999999999999998899999999999999999999999998 699 99
Q ss_pred ceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCC-CceeeecCCcccCCCCccccc
Q 018941 246 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDG-KTIEAEAAHGTVTRHYRVHQK 323 (348)
Q Consensus 246 I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~-~~~~fEp~HGSApd~~~~~ia 323 (348)
|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ .++||||+|||||| ||
T Consensus 204 i~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~psanig~~~~~~a~fEp~HGSAPd-----iA 278 (337)
T 1w0d_A 204 VEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANPSMFEPVHGSAPD-----IA 278 (337)
T ss_dssp SEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEECTTCSSCEEEEESSCCCGG-----GT
T ss_pred eEEEEEEHHHHHHHHhhCcccccEEEECcchhHHHHHHHhhhcCCcccCceeEeCCCCCCceEEecCCCChhh-----hC
Confidence 9999999999999999999999 99999999999999999999999999999999864 15999999999999 99
Q ss_pred CCCCCcChhHHHHHHHHHHHhhhc
Q 018941 324 GGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 324 Gk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
|||+ |||+|+|||++|||+|||+
T Consensus 279 Gk~i-ANP~A~IlS~ammL~~lg~ 301 (337)
T 1w0d_A 279 GQGI-ADPTAAIMSVALLLSHLGE 301 (337)
T ss_dssp TSSC-SCCHHHHHHHHHHHHHTTC
T ss_pred CCCC-cCCHHHHHHHHHHHHHCCC
Confidence 9999 9999999999999999985
No 9
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=100.00 E-value=2.5e-100 Score=749.90 Aligned_cols=292 Identities=18% Similarity=0.191 Sum_probs=262.9
Q ss_pred cccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhHhccCCCCcHHHHHHHHh-cCeeeecCCCCCCch
Q 018941 9 ANPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLK-YNVAIKCATITPDEA 83 (348)
Q Consensus 9 ~~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~-~da~lkg~~~~p~~~ 83 (348)
.++|++|||||||||||+++++++.+. +++|+|+++++|++++++||+++|++++++|++ ||++||||+++|...
T Consensus 10 ~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~~da~L~Gavg~P~~~ 89 (366)
T 3ty4_A 10 RIVLGLIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVERLKTECNAALFGAVQSPTHK 89 (366)
T ss_dssp EEEEEEEEESTTHHHHHHHHHHHHHTCCGGGCCEEEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCSEEEEEECCCCSSC
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHHHHhcCCceEEEEecchHHHHHhhCCCCCHHHHHHHHHhCCEEEECCccCCCCC
Confidence 479999999999999999999665442 689999999999999999999999999999999 699999999999643
Q ss_pred hhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCCCCCEEEEecccCccccccceeeeCCCceeeeeecCCC
Q 018941 84 RVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGK 163 (348)
Q Consensus 84 ~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~g 163 (348)
. .+|.|+|++|||+||||||+||+ +.+|++.. .++|||||||||||+|+|.+++... +. +
T Consensus 90 ~-------~~~~s~~l~LRk~ldlyaNvRP~--~~~~g~~~-~~vD~vivREnTeG~Y~g~e~~~~~-~~---------~ 149 (366)
T 3ty4_A 90 V-------AGYSSPIVALRKKMGLYANVRPV--KSLDGAKG-KPVDLVIVRENTECLYVKEERMVQN-TP---------G 149 (366)
T ss_dssp C-------TTCCCHHHHHHHHTTCCEEEEEE--ECCTTCSS-SCCEEEEEEECSCBGGGCCEEEEEC-CT---------T
T ss_pred C-------cccccchHHHHHHhCCeEEEEEE--eccCCCCC-CCCcEEEEeeCCCCEeecCcceecc-CC---------C
Confidence 2 15789999999999999999998 77887732 1489999999999999999876421 10 0
Q ss_pred CccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhC-------------CCCEEEEeCCCcccccchhHHHHHH
Q 018941 164 DEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK-------------KWPLYLSTKNTILKKYDGRFKDIFQ 230 (348)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r-------------~k~Vt~v~KaNVl~~~~g~f~~~~~ 230 (348)
++.+.++++|||+++|||+|+||+||++| +||||+|||+|||+.++|+|+++|+
T Consensus 150 -------------~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~~~~~~~~~~~~~rkkVt~v~KaNVl~~s~glf~~~~~ 216 (366)
T 3ty4_A 150 -------------KRVAEAIRRISEEASTKIGKMAFEIAKSRQKIRESGTYSIHKKPLVTIIHKSNVMSVTDGLFRESCR 216 (366)
T ss_dssp -------------CCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCSSCEEEEEECTTTCTTHHHHHHHHHH
T ss_pred -------------CceEEEEEEecHHHHHHHHHHHHHHHHhcCccccccccccCCCCeEEEEECCcchHhHHHHHHHHHH
Confidence 02355679999999999999999999998 6789999999999999999999999
Q ss_pred HHH--HhhhhccccCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceee
Q 018941 231 EVY--EANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEA 307 (348)
Q Consensus 231 eva--~key~~~~~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~f 307 (348)
||+ +++| |+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||++ ++||
T Consensus 217 ev~~~a~ey------pdV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~--~a~f 288 (366)
T 3ty4_A 217 HAQSLDPSY------ASINVDEQIVDSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGDN--FVMS 288 (366)
T ss_dssp HHGGGCGGG------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHGGGSCGGGCCCEEECSS--CEEE
T ss_pred HHHHhHhhC------CCceEEeeeHHHHHHHHHhCcccCcEEEECccchHHHHHHHHHhcCchhhhcceeeCCC--ceEE
Confidence 993 3699 999999999999999999999999 9999999999999999999999999999999964 5999
Q ss_pred ecCCcccCCCCcccccCCCCCcChhHHHHHHHHHHHhhhc
Q 018941 308 EAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 308 Ep~HGSApd~~~~~iaGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
||+|||||| |||||+ |||+|+|||++|||+|||.
T Consensus 289 EpvHGSAPd-----IaGk~i-ANP~A~IlS~amML~~lg~ 322 (366)
T 3ty4_A 289 EPVHGSAPD-----IAGRGI-ANPVATFRSVALMLEFMGH 322 (366)
T ss_dssp CCSSCCCTT-----TTTSSC-CCCHHHHHHHHHHHHHTTC
T ss_pred ecCCCChhh-----cCCCCc-cCcHHHHHHHHHHHHHCCC
Confidence 999999999 999999 9999999999999999985
No 10
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=100.00 E-value=1.7e-100 Score=751.74 Aligned_cols=297 Identities=16% Similarity=0.126 Sum_probs=262.0
Q ss_pred ccccEEEECCCCchHHHHHHHHHHHhc----CCCceEEEEEecch-hhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 018941 8 VANPIVEMDGDEMTRVFWKSIKDKLIF----PFLELDIKYFDLGL-PNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (348)
Q Consensus 8 m~~~I~vi~GDGIGpEv~~~~~~~~~~----~~~~i~~~~~~~G~-~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~ 82 (348)
|+++|++|||||||||||+++++++.+ .+++|+|+++++|. +++++||+++|++|+++|+++|++||||+++|..
T Consensus 4 ~~~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~ 83 (364)
T 3flk_A 4 HSFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVGWPDK 83 (364)
T ss_dssp -CEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHSSSSCTTHHHHHTTSSEEEEEECCBTTT
T ss_pred CceEEEEECCCcccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCcHHHHhccCCcCCHHHHHHHHHCCEEEECCccCccc
Confidence 568999999999999999999965533 27999999999999 8999999999999999999999999999999952
Q ss_pred hhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCC------CCCEEEEecccCccccccceeeeCCCceee
Q 018941 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW------TKPICIGRHAFGDQYRATDTVIQGPGKLKL 156 (348)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~------~~divivREnteG~Y~g~e~~~~~~g~~~~ 156 (348)
.. .. ..+.|+|++|||+||||||+||+ +.+|++.+++ ++|||||||||||+|+|.+++.. .+.
T Consensus 84 ~~-~~----~~~~s~~l~LR~~ldlyanvRP~--~~~pg~~splk~~~~~~vD~vivREnteG~Y~g~~~~~~-~~~--- 152 (364)
T 3flk_A 84 VP-DH----ISLWGSLLKFRREFDQYVNIRPV--RLFPGVPCALANRKVGDIDFVVVRENTEGEYSSLGGIMF-ENT--- 152 (364)
T ss_dssp BC-HH----HHHHTTHHHHHHHTTCCEEEEEE--ECCTTCCCSBTTCCTTSSEEEEEEECSSBTCCCCEEEES-TTS---
T ss_pred CC-CC----cCcccchHHHHHHhCCeEEEEEE--eccCCcccccccccCCCCCEEEEeeCCCceecCcCceec-cCC---
Confidence 10 01 01368899999999999999998 5666655443 47999999999999999876532 110
Q ss_pred eeecCCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchhHHHHHHHHHHh
Q 018941 157 VFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEA 235 (348)
Q Consensus 157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k-~Vt~v~KaNVl~~~~g~f~~~~~eva~k 235 (348)
+ ++.+.++++|||+++|||+|+||+||++|++ |||+|||+|||+.|+|+|+++|+||| +
T Consensus 153 ------~-------------~~~a~~~~~~T~~~~eRIar~AFe~A~~r~~kkVt~v~KaNvlk~s~glf~~~~~eva-~ 212 (364)
T 3flk_A 153 ------E-------------NEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMA-A 212 (364)
T ss_dssp ------T-------------TCEEEEEEEEEHHHHHHHHHHHHHHHHHSSSCEEEEEECTTTSTTHHHHHHHHHHHHH-T
T ss_pred ------C-------------CCEEEEEEEECHHHHHHHHHHHHHHHHhcCCCeEEEEECcchhhhHHHHHHHHHHHHH-H
Confidence 0 0235567999999999999999999999975 69999999999999999999999998 6
Q ss_pred hhhccccCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCC-ceeeecCCcc
Q 018941 236 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGT 313 (348)
Q Consensus 236 ey~~~~~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~-~~~fEp~HGS 313 (348)
+| |+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++. ++||||+|||
T Consensus 213 ey------pdv~~~~~~vD~~am~lv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig~~~~~~a~fEp~HGS 286 (364)
T 3flk_A 213 HY------PHVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGS 286 (364)
T ss_dssp TC------TTCEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCSTTCEEEEECTTCSSCEEEEESSCC
T ss_pred HC------CCceEEeeEHHHHHHHHHhCcccCcEEEecccchHHHHHHHHHhcCCcccccccccCCCCCcceEEecCCCC
Confidence 99 999999999999999999999999 999999999999999999999999999999998752 3999999999
Q ss_pred cCCCCcccccCCCCCcChhHHHHHHHHHHHhhhc
Q 018941 314 VTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 314 Apd~~~~~iaGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
||| |||||+ |||+|+|||++|||+|||+
T Consensus 287 APd-----iAGk~i-ANP~A~IlS~ammL~~lg~ 314 (364)
T 3flk_A 287 APD-----IFGKNI-ANPIAMIWSGALMLEFLGQ 314 (364)
T ss_dssp CTT-----TTTSSC-CCCHHHHHHHHHHHHHHHT
T ss_pred chh-----hcCCCc-cCcHHHHHHHHHHHHHhCc
Confidence 999 999999 9999999999999999993
No 11
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=100.00 E-value=1e-100 Score=751.59 Aligned_cols=291 Identities=19% Similarity=0.148 Sum_probs=257.3
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhh
Q 018941 10 NPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARV 85 (348)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~ 85 (348)
++|++|||||||||||+++++++.+. +++|+|+++++|+++++++|+++|++|+++|+++|++||||+++|.....
T Consensus 7 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~P~~~~~ 86 (361)
T 3udu_A 7 YKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFELNEAKIGGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNL 86 (361)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTTS
T ss_pred eeEEEECCCccCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCcEEECCcCCCCcCCC
Confidence 79999999999999999999655432 79999999999999999999999999999999999999999999843211
Q ss_pred hHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCC------C---CCCCCEEEEecccCccccccceeeeCCCceee
Q 018941 86 KEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLI------P---GWTKPICIGRHAFGDQYRATDTVIQGPGKLKL 156 (348)
Q Consensus 86 ~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~------~---~~~~divivREnteG~Y~g~e~~~~~~g~~~~ 156 (348)
+. .. ..|.++|++|||+||||||+||+ +.+|++. + ..++|||||||||||+|+|.++.. .
T Consensus 87 ~~-~~-~~~~~~~l~LRk~ldLyaNvRP~--~~~pg~~~~splk~~~~~~~vD~vivREnTeG~Y~g~~~~~--~----- 155 (361)
T 3udu_A 87 PI-DQ-RPERASLLPLRKHFNLFANLRPC--KIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLG--K----- 155 (361)
T ss_dssp CG-GG-SHHHHHHHHHHHHHTCCEEEEEE--ECCGGGGGGSSBCHHHHTTCCEEEEEEECSSGGGTSCEEEC--S-----
T ss_pred CC-Cc-CccccchHHHHHHcCCEEEEEEe--eccCCccccCCCccccccCCCcEEEEcccCCCeecCccCCc--C-----
Confidence 00 00 11233478999999999999998 5566542 1 225899999999999999976532 0
Q ss_pred eeecCCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhh
Q 018941 157 VFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAN 236 (348)
Q Consensus 157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~ke 236 (348)
+.+.++++|||+++|||+|+||+||++|+||||+|||+|||+ ++|+|+++|+||| ++
T Consensus 156 ---------------------~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNvl~-t~glf~~~~~eva-~e 212 (361)
T 3udu_A 156 ---------------------ESAYDTEIYTKKEIERIARIAFESARIRKKKVHLIDKANVLA-SSILWREVVANVA-KD 212 (361)
T ss_dssp ---------------------SEEEEEEEEEHHHHHHHHHHHHHHHHHTTSEEEEEECTTTCH-HHHHHHHHHHHHG-GG
T ss_pred ---------------------ceEEEEEeccHHHHHHHHHHHHHHHHHcCCcEEEEECchhhc-cchHHHHHHHHHH-HH
Confidence 125567899999999999999999999999999999999997 8999999999998 59
Q ss_pred hhccccCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccC
Q 018941 237 WKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVT 315 (348)
Q Consensus 237 y~~~~~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSAp 315 (348)
| |||+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ ++||||+|||||
T Consensus 213 y------pdV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGSAP 285 (361)
T 3udu_A 213 Y------QDINLEYMYVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKG-FGLYEPAGGSAP 285 (361)
T ss_dssp C------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHCCGGGCEEEEECTTS-CEEEEESSCCCG
T ss_pred C------CCCeEEeeeHHHHHHHHHhCcccCcEEEecchhHHHHHHHHHHhcCchhhcceeeeCCCC-CeeeecCCCChh
Confidence 9 999999999999999999999999 99999999999999999999999999999999875 599999999999
Q ss_pred CCCcccccCCCCCcChhHHHHHHHHHHHh-hhc
Q 018941 316 RHYRVHQKGGETSTNSIASIFAWSRGLAH-RYK 347 (348)
Q Consensus 316 d~~~~~iaGk~i~ANP~a~IlS~ammL~~-lg~ 347 (348)
| |||||+ |||+|+|||++|||+| ||.
T Consensus 286 d-----IAGk~i-ANP~A~IlS~amML~~~lg~ 312 (361)
T 3udu_A 286 D-----IAHLNI-ANPIAQILSAALMLKYSFKE 312 (361)
T ss_dssp G-----GTTSSC-CCCHHHHHHHHHHHHHTSCC
T ss_pred h-----hcCCCc-cCCHHHHHHHHHHHHHhCCC
Confidence 9 999999 9999999999999999 874
No 12
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=100.00 E-value=3.1e-100 Score=751.32 Aligned_cols=298 Identities=20% Similarity=0.206 Sum_probs=260.7
Q ss_pred ccccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCch
Q 018941 8 VANPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEA 83 (348)
Q Consensus 8 m~~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~ 83 (348)
-.++|++|||||||||||+++++++.+. +++|+|+++++|++++++||+++|++|+++|+++|++||||+++|...
T Consensus 12 ~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~g~~~~~~~~~~G~~~~~~~G~~lp~etl~~~~~~da~L~Gavg~P~~~ 91 (375)
T 3vmk_A 12 SSYQIAVLAGDGIGPEVMAEARKVLAAVEKRFDLSIEYSEYDVGGAAIDNHGCPLPEATLKGCEAADAVLFGSVGGPKWE 91 (375)
T ss_dssp SCEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGT
T ss_pred CcceEEEECCCcccHHHHHHHHHHHHHHHHhcCCCEEEEEEECCHHHHHhhCCcCCHHHHHHHHHCCeEEECCcCCCCcc
Confidence 4589999999999999999999655332 699999999999999999999999999999999999999999998532
Q ss_pred hhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCC---C------CCCCCEEEEecccCccccccceeeeCCCce
Q 018941 84 RVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLI---P------GWTKPICIGRHAFGDQYRATDTVIQGPGKL 154 (348)
Q Consensus 84 ~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~---~------~~~~divivREnteG~Y~g~e~~~~~~g~~ 154 (348)
..+. ....|.++|++|||+||||||+||+ +.+|++. + ..++|||||||||||+|+|.++.... +
T Consensus 92 ~~~~--~~~~~~~~~l~LRk~ldLyaNvRP~--~~~pg~~~~splk~~~~~~~vD~vIvREnTeG~Y~g~~~~~~~-~-- 164 (375)
T 3vmk_A 92 HLPP--NDQPERGALLPLRGHFELFCNMRPA--KLHPGLEHMSPLRSDISEKGFDILCVRELTGGIYFGKPKGRQG-E-- 164 (375)
T ss_dssp TSCS--TTSHHHHHHHHHHHHTTCCEEEEEE--ECCTTCGGGSSBCHHHHTTCCEEEEEEECSSBTTTCSSCEEEC-C--
T ss_pred CCCc--cccccccchHHHHHHcCCeEEEEEE--eccCCCcccCCCCcccccCCCCEEEEeeCCCCEecCCcccccc-C--
Confidence 1100 0112445689999999999999998 5566552 1 24689999999999999998654321 0
Q ss_pred eeeeecCCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHH
Q 018941 155 KLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYE 234 (348)
Q Consensus 155 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~ 234 (348)
.+ ++.+.++++|||+++|||+|+||+||++|+||||+|||+|||+ ++|+|+++|+|||
T Consensus 165 -------~~-------------~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNvl~-~~glf~~~~~eva- 222 (375)
T 3vmk_A 165 -------GE-------------NEEAFDTMRYSRKEIRRIAKIAFESAQGRRKKVTSVDKANVLA-CSVLWREVVEEVA- 222 (375)
T ss_dssp -------GG-------------GCEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-
T ss_pred -------CC-------------CceEEEEEEEcHHHHHHHHHHHHHHHHHcCCcEEEEECchhhh-hhhHHHHHHHHHH-
Confidence 00 1235567999999999999999999999999999999999999 5799999999998
Q ss_pred hhhhccccCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcc
Q 018941 235 ANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGT 313 (348)
Q Consensus 235 key~~~~~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGS 313 (348)
++| |||+++++|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ ++||||+|||
T Consensus 223 ~ey------pdV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGS 295 (375)
T 3vmk_A 223 KDY------PDVELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLASISMNSQG-FGMYEPAGGS 295 (375)
T ss_dssp TTC------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTS-CEEEEESSCC
T ss_pred HHC------CCceEeeeeHHHHHHHHHhCcccCcEEEECchhHHHHHHHHHHhcCCccccceeeeCCCC-ceEEecCCCC
Confidence 599 999999999999999999999999 99999999999999999999999999999999875 5999999999
Q ss_pred cCCCCcccccCCCCCcChhHHHHHHHHHHHh-hhc
Q 018941 314 VTRHYRVHQKGGETSTNSIASIFAWSRGLAH-RYK 347 (348)
Q Consensus 314 Apd~~~~~iaGk~i~ANP~a~IlS~ammL~~-lg~ 347 (348)
||| |||||+ |||+|+|||++|||+| ||+
T Consensus 296 APd-----IAGk~i-ANP~A~IlS~amML~~~lg~ 324 (375)
T 3vmk_A 296 APD-----IAGQGI-ANPVAQILSAALLLRHSLKL 324 (375)
T ss_dssp CTT-----TTTSSC-SCCHHHHHHHHHHHHHTTCC
T ss_pred chh-----ccCCCc-cCcHHHHHHHHHHHHHHCCC
Confidence 999 999999 9999999999999999 884
No 13
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=100.00 E-value=7.4e-100 Score=745.49 Aligned_cols=290 Identities=18% Similarity=0.151 Sum_probs=259.3
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhh
Q 018941 10 NPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARV 85 (348)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~ 85 (348)
++|++|||||||||||+++++++.+. +++|+|+++++|.+++++||+++|++++++|+++|++||||+++|...+.
T Consensus 4 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~P~~~~~ 83 (359)
T 2y3z_A 4 MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDGL 83 (359)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEECCCCCGGGTTS
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeccHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCccccC
Confidence 79999999999999999999765443 68999999999999999999999999999999999999999999953221
Q ss_pred hHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCC--CC------CCCCEEEEecccCccccccceeeeCCCceeee
Q 018941 86 KEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLI--PG------WTKPICIGRHAFGDQYRATDTVIQGPGKLKLV 157 (348)
Q Consensus 86 ~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~--~~------~~~divivREnteG~Y~g~e~~~~~~g~~~~~ 157 (348)
+. .+ +.|+| |++|||+||||||+||+ +.+|++. ++ .++|||||||||||+|+|.++... .
T Consensus 84 ~~-~~-~~~~~-~l~LR~~ldlyanvRP~--~~~pgl~~~splk~~~~~~iD~vivREnteg~Y~g~e~~~~-~------ 151 (359)
T 2y3z_A 84 PR-KI-RPETG-LLSLRKSQDLFANLRPA--KVFPGLERLSPLKEEIARGVDVLIVRELTGGIYFGEPRGMS-E------ 151 (359)
T ss_dssp CG-GG-CHHHH-HHHHHHHTTEEEEEEEE--ECCTTCGGGSSSCHHHHTTCEEEEEEECSCSTTTCSSCEEC-S------
T ss_pred Cc-cc-ccchh-HHHHHHHhCCEEEEEEe--eccCCCCCCCCcccccCCCceEEEEecCccceEecCCCcCC-C------
Confidence 11 11 12445 89999999999999998 6777763 22 247999999999999999865320 0
Q ss_pred eecCCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhh
Q 018941 158 FVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANW 237 (348)
Q Consensus 158 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key 237 (348)
+.+.++++|||+++|||+|+||+||++|++|||+|||+|||+ ++|+|+++|+||| ++|
T Consensus 152 --------------------~~a~~~~~~T~~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva-~ey 209 (359)
T 2y3z_A 152 --------------------AEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLE-VGEFWRKTVEEVG-RGY 209 (359)
T ss_dssp --------------------SCEECCCCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-TTC
T ss_pred --------------------ceEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCcccc-ccHHHHHHHHHHH-HHC
Confidence 124567899999999999999999999988999999999999 8999999999998 699
Q ss_pred hccccCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCC
Q 018941 238 KSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 316 (348)
Q Consensus 238 ~~~~~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd 316 (348)
|+|+++++|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ +||||+||||||
T Consensus 210 ------pdI~~~~~~VD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig~~~--~~fEpvHGSAPd 281 (359)
T 2y3z_A 210 ------PDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGT--PVFEPVHGSAPD 281 (359)
T ss_dssp ------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTSCGGGCEEEEEESSC--CEEEESSCCCGG
T ss_pred ------CcEEEEeeEHHHHHHHHhhCcccccEEEEcCcchHHHHHHHHHhcCcccccceeEeCCCC--ceeecCCCChhh
Confidence 999999999999999999999999 99999999999999999999999999999999876 599999999999
Q ss_pred CCcccccCCCCCcChhHHHHHHHHHHHh-hhc
Q 018941 317 HYRVHQKGGETSTNSIASIFAWSRGLAH-RYK 347 (348)
Q Consensus 317 ~~~~~iaGk~i~ANP~a~IlS~ammL~~-lg~ 347 (348)
|||||+ |||+|+|||++|||+| ||+
T Consensus 282 -----iAGk~i-ANP~A~IlS~ammL~~slg~ 307 (359)
T 2y3z_A 282 -----IAGKGI-ANPTAAILSAAMMLEHAFGL 307 (359)
T ss_dssp -----GTTSSC-SCTHHHHHHHHHHHHHTTCC
T ss_pred -----hCCCCC-cCCHHHHHHHHHHHHHhcCC
Confidence 999999 9999999999999999 985
No 14
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=100.00 E-value=2.7e-99 Score=756.41 Aligned_cols=316 Identities=19% Similarity=0.152 Sum_probs=263.3
Q ss_pred cccccEEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecchhhHhccCC--CCcHHHHHHHHhcCeeeecCC
Q 018941 7 KVANPIVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDD--KVTVESAEATLKYNVAIKCAT 77 (348)
Q Consensus 7 ~m~~~I~vi~GDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~g~--~lp~~~l~~~~~~da~lkg~~ 77 (348)
+++++|++|||||||||||+++++++.++ +++|+|+++++|.+++++||+ ++|++|+++|+++|++||||+
T Consensus 34 p~~~~I~vipGDGIGpEV~~~a~~Vl~aa~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lp~etl~~~k~~da~l~G~~ 113 (427)
T 3dms_A 34 SDQPIIPYIEGDGTGFDITPVMIKVVDAAVEKAYGGKKKIHWMEIYAGEKATKVYGPDVWLPEETLQVLKEYVVSIKGPL 113 (427)
T ss_dssp CSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHTCEEEECCC
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeCCHHHHHhcCCCCCCCHHHHHHHHhcCEEEECCC
Confidence 34578999999999999999999655432 279999999999999999999 999999999999999999999
Q ss_pred CCCCchhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCC----CCCEEEEecccCccccccceeeeCCCc
Q 018941 78 ITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW----TKPICIGRHAFGDQYRATDTVIQGPGK 153 (348)
Q Consensus 78 ~~p~~~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~----~~divivREnteG~Y~g~e~~~~~~g~ 153 (348)
++|.. .+|+|+|++|||+||||||+||+ +.+|++.++. ++|||||||||||+|+|+|++...+..
T Consensus 114 ~tP~~---------~~~~s~~l~LRk~LdLyaNlRPv--~~~pg~~splk~~~~vDivIvREnTeG~Y~G~e~~~~~~~~ 182 (427)
T 3dms_A 114 TTPVG---------GGIRSLNVALRQELDLYVCLRPI--QYFKGVPSPVREPEKTNMVIFRENSEDIYAGIEWAAESEQA 182 (427)
T ss_dssp CCCC-------------CCHHHHHHHHTTCCEEEEEE--CCCTTCCCSSSCGGGCCEEEEEECSSGGGGCCEECTTCHHH
T ss_pred CCCCC---------cccCChhHHHHHHhCCeEEEEEe--ecCCCCCCCCCCCCCceEEEEEECCCCEecCcccccCCccc
Confidence 99964 25789999999999999999998 6666665443 579999999999999999875311000
Q ss_pred eee-eee-cCCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHH
Q 018941 154 LKL-VFV-PEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQ 230 (348)
Q Consensus 154 ~~~-~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~ 230 (348)
.+. .|. .+.|.. ...++ ++.++..++|||+++|||+|+||+||++|+ ||||+|||+|||+.|+|+|+++|+
T Consensus 183 ~~~~~~~~~~~g~~-----~~~~~-~~~a~~~~~~Tr~~~eRIar~AFe~A~~r~rkkVT~V~KaNVlk~tdglfr~~~~ 256 (427)
T 3dms_A 183 KKVIKFLQEEMGVK-----KIRFP-QTSGIGIKPVSKEGTERLVRKAIQYAIDNDRKSVTLVHKGNIMKFTEGAFRDAGY 256 (427)
T ss_dssp HHHHHHHHHTSCCC-----CCSCG-GGCCEECCCCCHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHH
T ss_pred cccccccccccccc-----ccccC-CcceEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHH
Confidence 000 000 000100 00111 134556789999999999999999999985 689999999999999999999999
Q ss_pred HHHHhhhhcc-------------ccCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCcccccccc
Q 018941 231 EVYEANWKSK-------------FEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSV 296 (348)
Q Consensus 231 eva~key~~~-------------~~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsa 296 (348)
|||+++|.+. +.+|+|+++++|||+||||||++|++| ||||+|||||||||++|+++|||||+||+
T Consensus 257 eva~~eypdv~~~~~~~~~~~~~~~~~~V~~~~~~VD~~amqlv~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSa 336 (427)
T 3dms_A 257 ALAQKEFGAELIDGGPWMKFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGGIGIAPGA 336 (427)
T ss_dssp HHHHHHHCCEESTTSSCEEEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHTTCTTTCEEE
T ss_pred HHHHHhCCccccccccccccccccccCceEEEEeeHHHHHHHHhhCcccceEEEEcccccHHHHHHHHHhcCCcccccee
Confidence 9996579331 223469999999999999999999999 99999999999999999999999999999
Q ss_pred ccCCCCCceeeecCCcccCCCCcccccCCCCCcChhHHHHHHHHHHHhhhc
Q 018941 297 LVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 297 nig~~~~~~~fEp~HGSApd~~~~~iaGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
|||++ .+||||+|||||| |||||+ |||+|+|||++|||+|||.
T Consensus 337 nig~~--~a~fEpvHGSAPd-----IAGk~i-ANP~A~IlS~amML~~lg~ 379 (427)
T 3dms_A 337 NLSDS--VAMFEATHGTAPK-----YAGKDY-VNPGSEILSAEMMLRHLGW 379 (427)
T ss_dssp EECSS--CEEEEECSCCCGG-----GTTSSC-SCCHHHHHHHHHHHHHTTC
T ss_pred eeCCC--cceEEeccCChhh-----hcCCCc-CCcHHHHHHHHHHHHhcCC
Confidence 99975 4999999999999 999999 9999999999999999984
No 15
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=100.00 E-value=2e-99 Score=750.69 Aligned_cols=299 Identities=17% Similarity=0.135 Sum_probs=260.2
Q ss_pred cccccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 018941 7 KVANPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (348)
Q Consensus 7 ~m~~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~ 82 (348)
+|+++|++|||||||||||+++++++.+. +++|+|+++++|++++++||+++|++++++|+++|++||||+++|..
T Consensus 40 ~~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~daiL~Gavg~P~~ 119 (405)
T 3r8w_A 40 KKRYTITLLPGDGIGPEVVSIAKNVLQQAGSLEGVEFNFREMPIGGAALDLVGVPLPEETISAAKESDAVLLGAIGGYKW 119 (405)
T ss_dssp -CEEEEEEEEESTTHHHHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGG
T ss_pred CCCeEEEEECCCcccHHHHHHHHHHHHHHHHhcCCceEEEEEEcCHHHHHhhCCcCCHHHHHHHHHCCEEEEccccCCCc
Confidence 46789999999999999999999655432 68999999999999999999999999999999999999999999853
Q ss_pred hhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCC--CC------CCCCEEEEecccCccccccceeeeCCCce
Q 018941 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLI--PG------WTKPICIGRHAFGDQYRATDTVIQGPGKL 154 (348)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~--~~------~~~divivREnteG~Y~g~e~~~~~~g~~ 154 (348)
...+.. ..+.++|++|||+||||||+||+ +.+|++. ++ .++|||||||||||+|+|.++.....+
T Consensus 120 ~~~~~~---~~p~~~ll~LRk~ldLyaNlRP~--k~~~gl~~~splk~~~~~~vD~vIvREnTeG~Y~G~e~~~~~~~-- 192 (405)
T 3r8w_A 120 DNNEKH---LRPEKGLLQIRAALKVFANLRPA--TVLPQLVDASTLKREVAEGVDLMVVRELTGGIYFGEPRGIKTNE-- 192 (405)
T ss_dssp TTSCGG---GSHHHHHHHHHHHHTCCEEEEEE--ECCGGGGGGSSBCHHHHTTCEEEEEEECSCSTTTCSSCEEEECS--
T ss_pred cCCccc---cCcccchHHHHHHhCCeEEEEEe--eccCCccccCccccccCCCceEEEEeeCCCCeecCCccccccCC--
Confidence 211000 01124578999999999999998 5666552 21 257999999999999999887542110
Q ss_pred eeeeecCCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHH
Q 018941 155 KLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYE 234 (348)
Q Consensus 155 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~ 234 (348)
.| ++.+.++++|||+++|||+|+||+||++|+||||+|||+|||+.+ |+|+++|+||+
T Consensus 193 -------~~-------------~~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVT~v~KaNVlk~s-glf~~~~~eva- 250 (405)
T 3r8w_A 193 -------NG-------------EEVGFNTEVYAAHEIDRIARVAFETARKRRGKLCSVDKANVLEAS-ILWRKRVTALA- 250 (405)
T ss_dssp -------SS-------------CEEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCHHH-HHHHHHHHHHG-
T ss_pred -------CC-------------ceEEEEEEEecHHHHHHHHHHHHHHHHHcCCeEEEEECchhhccc-cHHHHHHHHHH-
Confidence 00 123556799999999999999999999999999999999999954 99999999997
Q ss_pred hhhhccccCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcc
Q 018941 235 ANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGT 313 (348)
Q Consensus 235 key~~~~~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGS 313 (348)
++| |||+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ ++||||+|||
T Consensus 251 ~eY------PdV~~~~~~VD~~amqLV~~P~~FDViVt~NlfGDILSD~aA~l~GslGl~pSanig~~~-~a~fEpvHGS 323 (405)
T 3r8w_A 251 SEY------PDVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSG-PGLFEPIHGS 323 (405)
T ss_dssp GGS------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSCGGGCEEEEECSSS-CCEEEESSCC
T ss_pred hHC------CCCeEEeeeHHHHHHHHHhChhhCcEEeecchhhHHHHHHHHHhcCcccccceeeecCCC-CeEEecCCCC
Confidence 699 999999999999999999999999 99999999999999999999999999999999876 6999999999
Q ss_pred cCCCCcccccCCCCCcChhHHHHHHHHHHHh-hhc
Q 018941 314 VTRHYRVHQKGGETSTNSIASIFAWSRGLAH-RYK 347 (348)
Q Consensus 314 Apd~~~~~iaGk~i~ANP~a~IlS~ammL~~-lg~ 347 (348)
||| |||||+ |||+|+|||++|||+| ||+
T Consensus 324 APD-----IAGk~i-ANP~A~IlS~amML~~slg~ 352 (405)
T 3r8w_A 324 APD-----IAGQDK-ANPLATILSAAMLLKYGLGE 352 (405)
T ss_dssp CGG-----GTTTTC-CCCHHHHHHHHHHHHHTTCC
T ss_pred hhh-----hCCCCC-CCcHHHHHHHHHHHHhhCcc
Confidence 999 999999 9999999999999999 885
No 16
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=1.2e-98 Score=757.97 Aligned_cols=292 Identities=20% Similarity=0.207 Sum_probs=270.1
Q ss_pred ccccccc----ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccC-CCCcHHHHHHHHhcCeeeecCC
Q 018941 3 FQKIKVA----NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATD-DKVTVESAEATLKYNVAIKCAT 77 (348)
Q Consensus 3 ~~~~~m~----~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g-~~lp~~~l~~~~~~da~lkg~~ 77 (348)
.+||+|. ++|++|||||||||||+++++++.+.+++|+|+++++|.+++++|| +++|++++++|+++||+||||+
T Consensus 9 ~~~i~~~~~g~~~IavipGDGIGpEV~~~a~~VL~a~~~~ie~~~~~~G~~~~~~~G~~~lp~etle~ik~~daiLkGav 88 (496)
T 2d1c_A 9 GKKMHVLEDGRKLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPL 88 (496)
T ss_dssp SCEEEECTTSCEEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCSHHHHTTTCTTSCCHHHHHHHHHHCEEEECCC
T ss_pred CceeEeccCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEEEEEecCHHHHhccCCCcCcHHHHHHHHHCCEEEECCc
Confidence 5678887 7999999999999999999987777799999999999999999999 9999999999999999999999
Q ss_pred CCCCchhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCC---CCCEEEEecccCccccccceeeeCCCce
Q 018941 78 ITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW---TKPICIGRHAFGDQYRATDTVIQGPGKL 154 (348)
Q Consensus 78 ~~p~~~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~---~~divivREnteG~Y~g~e~~~~~~g~~ 154 (348)
++|.. .+|+|+|++|||+||||||+||+ +.+|++.+++ ++|||||||||||+|+|.+++.. +
T Consensus 89 gtP~~---------~~~~s~~l~LRk~LdLyaNlRP~--k~~pgl~splk~~~vD~vIVREnTEG~Y~G~e~~~~-~--- 153 (496)
T 2d1c_A 89 ETPVG---------YGEKSANVTLRKLFETYANVRPV--REFPNVPTPYAGRGIDLVVVRENVEDLYAGIEHMQT-P--- 153 (496)
T ss_dssp CCCSS---------SSSCCHHHHHHHHTTCCEEEEEE--ECBTTBCCTTTTSCCEEEEEEECSSBGGGCCEEEEE-T---
T ss_pred cCCCc---------ccccChHHHHHHHhCCEEEEEEE--eecCCCCccccCCCccEEEEeeCcCceEeceeEecC-C---
Confidence 99963 25889999999999999999997 6777766554 47999999999999999876531 1
Q ss_pred eeeeecCCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchhHHHHHHHHH
Q 018941 155 KLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVY 233 (348)
Q Consensus 155 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r-~k~Vt~v~KaNVl~~~~g~f~~~~~eva 233 (348)
+.+..+++|||+++|||+|+||+||++| ++|||+|||+|||+.|+|+|+++|+|||
T Consensus 154 -----------------------~va~~~~v~Tr~~ieRIar~AFe~A~~r~rkkVT~V~KaNVlk~sdGlfr~v~~eVa 210 (496)
T 2d1c_A 154 -----------------------SVAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVA 210 (496)
T ss_dssp -----------------------TEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred -----------------------CeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCchhhHHHHHHHHHHHHH
Confidence 1244578899999999999999999999 5789999999999999999999999998
Q ss_pred HhhhhccccCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCc
Q 018941 234 EANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHG 312 (348)
Q Consensus 234 ~key~~~~~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HG 312 (348)
++| |+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ +||||+||
T Consensus 211 -~eY------PdI~~e~~~VD~~amqLV~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSanig~~~--a~FEpvHG 281 (496)
T 2d1c_A 211 -QEY------PDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNEV--AIFEAVHG 281 (496)
T ss_dssp -TTC------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTTCGGGCEEEEECSSC--EEEEESSC
T ss_pred -HHC------CCceEEEEeHHHHHHHHhhCcCcceEEEECCcchHHHHHHHHHhcCCcccCcEEEECCCC--ceeeCCCC
Confidence 699 999999999999999999999999 99999999999999999999999999999999874 89999999
Q ss_pred ccCCCCcccccCCCCCcChhHHHHHHHHHHHhhhc
Q 018941 313 TVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 313 SApd~~~~~iaGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
|||| |||||+ |||+|+|||++|||+|||+
T Consensus 282 SAPD-----IAGk~i-ANP~A~IlSaamML~hlG~ 310 (496)
T 2d1c_A 282 SAPK-----YAGKNV-INPTAVLLSAVMMLRYLEE 310 (496)
T ss_dssp CCTT-----TTTSSC-CCCHHHHHHHHHHHHHTTC
T ss_pred chhh-----hcCCCc-cCcHHHHHHHHHHHHHCCC
Confidence 9999 999999 9999999999999999985
No 17
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=100.00 E-value=3.1e-99 Score=742.92 Aligned_cols=296 Identities=17% Similarity=0.125 Sum_probs=260.9
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhh
Q 018941 10 NPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARV 85 (348)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~ 85 (348)
++|++|||||||||||+++++++.+. +++|+|+++++|++++++||+++|++++++|+++|++||||+++|.....
T Consensus 5 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~p~~~~~ 84 (363)
T 1cnz_A 5 YHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYDVGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPKWENL 84 (363)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCEEEEECCCTHHHHHHHSSSSCHHHHHHHHTSSEEEEEECCCGGGTTS
T ss_pred cEEEEeCCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCChHHHhhcCCcCcHHHHHHHHHCCEEEEccccCCccccC
Confidence 79999999999999999999765443 68999999999999999999999999999999999999999999853211
Q ss_pred hHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCC--CCC-------CCCEEEEecccCccccccceeeeCCCceee
Q 018941 86 KEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLI--PGW-------TKPICIGRHAFGDQYRATDTVIQGPGKLKL 156 (348)
Q Consensus 86 ~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~--~~~-------~~divivREnteG~Y~g~e~~~~~~g~~~~ 156 (348)
+. .+ ..+.|+|++|||+||||+|+||+ +.+|++. +++ ++|||||||||||+|+|.++... .+
T Consensus 85 ~~-~~-~~e~~~~l~LR~~ldlyanvRP~--~~~pgl~~~splk~~~~~~~vDivivREnteg~Y~g~~~~~~-~~---- 155 (363)
T 1cnz_A 85 PP-ES-QPERGALLPLRKHFKLFSNLRPA--KLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGRE-GS---- 155 (363)
T ss_dssp CG-GG-STTHHHHHHHHHHHTCCEEEEEE--ECCTTCGGGCSBCHHHHHHCCEEEEEEECSSGGGTCSSCEEE-CC----
T ss_pred Cc-cc-CcccchHHHHHHHcCCEEEEEEE--EecCCccCCCCCcccccCCCCCEEEEecccCCeecCCcCccc-cC----
Confidence 11 11 13456789999999999999998 5677763 232 47999999999999999854221 00
Q ss_pred eeecCCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhh
Q 018941 157 VFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAN 236 (348)
Q Consensus 157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~ke 236 (348)
. +++.++++++|||+++|||+|+||+||++|+||||+|||+|||+ ++|+|+++|+||| ++
T Consensus 156 -----~-------------~~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva-~e 215 (363)
T 1cnz_A 156 -----G-------------QYEKAFDTEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQ-SSILWREIVNDVA-KT 215 (363)
T ss_dssp -----G-------------GGCEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-TT
T ss_pred -----C-------------CCceEEEEEEEcHHHHHHHHHHHHHHHHhcCCeEEEEECCcccc-cchhHHHHHHHHH-HH
Confidence 0 01235568999999999999999999999988999999999999 8999999999998 69
Q ss_pred hhccccCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccC
Q 018941 237 WKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVT 315 (348)
Q Consensus 237 y~~~~~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSAp 315 (348)
| |+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||+++ ++||||+|||||
T Consensus 216 y------pdI~~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~-~a~fEpvHGSAP 288 (363)
T 1cnz_A 216 Y------PDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG-FGLYEPAGGSAP 288 (363)
T ss_dssp C------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECTTS-CEEEEESSCCCG
T ss_pred C------CCceEeeeeHHHHHHHHhhCcccceEEEECCcchHHHHHHHHHhcCCCcccccceeCCCC-CeEEEcCCCChh
Confidence 9 999999999999999999999999 99999999999999999999999999999999876 589999999999
Q ss_pred CCCcccccCCCCCcChhHHHHHHHHHHHh-hhc
Q 018941 316 RHYRVHQKGGETSTNSIASIFAWSRGLAH-RYK 347 (348)
Q Consensus 316 d~~~~~iaGk~i~ANP~a~IlS~ammL~~-lg~ 347 (348)
| |||||+ |||+|+|||++|||+| ||+
T Consensus 289 d-----iAGk~i-ANP~A~IlS~ammL~~~lg~ 315 (363)
T 1cnz_A 289 D-----IAGKNI-ANPIAQILSLALLLRYSLDA 315 (363)
T ss_dssp G-----GTTTTC-SCCHHHHHHHHHHHHHHSSC
T ss_pred h-----hcCCCc-cCcHHHHHHHHHHHHHHCCC
Confidence 9 999999 9999999999999999 984
No 18
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=100.00 E-value=1.8e-99 Score=741.51 Aligned_cols=285 Identities=21% Similarity=0.221 Sum_probs=262.7
Q ss_pred cccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhhhHH
Q 018941 9 ANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEF 88 (348)
Q Consensus 9 ~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~~~~ 88 (348)
.++|++|||||||||||+++++++.+.+++|+|+++++|.++ ++||+++|++++++|+++|++||||+++|..
T Consensus 21 ~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~~~-~~~g~~lp~~tl~~~~~~da~l~Gav~~P~~------ 93 (354)
T 3blx_B 21 KYTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIF-VNGLTTIPDPAVQSITKNLVALKGPLATPIG------ 93 (354)
T ss_dssp CEECBCCCCSTTHHHHHHHHHHHHHTTTCSEECCCCCCCCEE-ETTEEECCHHHHHHHHHHSEEEECCCCCC--------
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEEechhh-hhhCCCCCHHHHHHHHHCCEEEECCccCCCC------
Confidence 368999999999999999999777777899999999999999 9999999999999999999999999999953
Q ss_pred HhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCCC-CCEEEEecccCccccccceeeeCCCceeeeeecCCCCccc
Q 018941 89 VLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWT-KPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT 167 (348)
Q Consensus 89 ~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~~-~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~g~~~~ 167 (348)
.+|+|+|++|||+||||+|+||+ +.+|++.++++ +|||||||||||+|+|.+++.. +
T Consensus 94 ---~~~~s~~l~lR~~ldlyan~RP~--~~~pg~~s~~~~vD~vivREnteg~Y~g~e~~~~-~---------------- 151 (354)
T 3blx_B 94 ---KGHRSLNLTLRKTFGLFANVRPA--KSIEGFKTTYENVDLVLIRENTEGEYSGIEHIVC-P---------------- 151 (354)
T ss_dssp -----CCCHHHHHHHHHTEEEEEEEE--ECCTTCCCSSCSCEEEEEEECSSEEEEEEEEECS-T----------------
T ss_pred ---ccccCchHHHHHHcCCEEEEEEe--cccCCCCCCCCCccEEEEecCcCCcccCCccccc-C----------------
Confidence 25789999999999999999998 67888876664 8999999999999999876421 1
Q ss_pred hhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCCc
Q 018941 168 ELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGI 246 (348)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r-~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~~p~I 246 (348)
+.+.++++|||+++|||+|+||+||++| +||||+|||+|||+.++|+|+++|+||| ++| |+|
T Consensus 152 ----------~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva-~ey------pdI 214 (354)
T 3blx_B 152 ----------GVVQSIKLITRDASERVIRYAFEYARAIGRPRVIVVHKSTIQRLADGLFVNVAKELS-KEY------PDL 214 (354)
T ss_dssp ----------TEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEESCTTTCHHHHHHHHHHHHHG-GGC------TTS
T ss_pred ----------CEEEEEEEEcHHHHHHHHHHHHHHHHhcCCCeEEEEECCcchHhHHHHHHHHHHHHH-HHC------CCc
Confidence 1245679999999999999999999999 5789999999999999999999999998 699 999
Q ss_pred eEeeehHHHHHHHHHhCCCCc---EEEeCCcccchHHhhhhhh-cCccccccccccCCCCCceeeecCCcccCCCCcccc
Q 018941 247 WYEHRLIDDMVAYALKSEGGY---VWACKNYDGDVQSDFLAQG-FGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQ 322 (348)
Q Consensus 247 ~~~~~~VDa~~~~lv~~P~~F---Viv~~NlfGDILSDlaa~l-~GslGlapsanig~~~~~~~fEp~HGSApd~~~~~i 322 (348)
+++|+|||+||||||++|++| ||||+|||||||||++|++ +|||||+||+|||++. +||||+|||||| |
T Consensus 215 ~~~~~~vD~~~m~lv~~P~~FD~~Vivt~NlfGDIlSD~aa~l~~GslGl~pSanig~~~--a~fEp~HGSAPd-----i 287 (354)
T 3blx_B 215 TLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGSLGLTPSANIGHKI--SIFEAVHGSAPD-----I 287 (354)
T ss_dssp EEEEEEHHHHHHHHHHCGGGGTTEEEEECHHHHHHHHHHHHHHHTSSGGGCEEEEEESSC--EEEEECSCCCGG-----G
T ss_pred eEEEEEHHHHHHHHhhChhhCCceEEEecCcccchhHHHHHhhccCCccccceeEECCCc--eEEecCCCChhh-----h
Confidence 999999999999999999999 9999999999999999999 9999999999999864 899999999999 9
Q ss_pred cCCCCCcChhHHHHHHHHHHHhhhc
Q 018941 323 KGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 323 aGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
||||+ |||+|+|||++|||+|||+
T Consensus 288 AGk~i-ANP~A~IlS~ammL~~lg~ 311 (354)
T 3blx_B 288 AGQDK-ANPTALLLSSVMMLNHMGL 311 (354)
T ss_dssp TTTTC-CCTHHHHHHHHHHHHHHTC
T ss_pred cCCCc-cCcHHHHHHHHHHHHHcCC
Confidence 99999 9999999999999999985
No 19
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=100.00 E-value=9.6e-99 Score=749.42 Aligned_cols=311 Identities=21% Similarity=0.208 Sum_probs=258.7
Q ss_pred cccccc--ccEEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeee
Q 018941 4 QKIKVA--NPIVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIK 74 (348)
Q Consensus 4 ~~~~m~--~~I~vi~GDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lk 74 (348)
+|+++. ++|++|||||||||||+++++++.+. +++|+|+++++|.+++++||+++|++|+++|+++||+||
T Consensus 17 ~~~~vp~~~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~Lk 96 (409)
T 2e0c_A 17 GKWIVPNKPVILYIEGDGIGPEITNAAIKVINKAVERAYGSSREIKWLEVYAGEKAEKLVNDRFPKETQEMLLKYRVVLK 96 (409)
T ss_dssp SCEECCSSBEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEE
T ss_pred CeEecCCCceEeeCCCCCcCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEechHHHHHhhCCcCCHHHHHHHHHCCEEEE
Confidence 444443 47999999999999999999765433 389999999999999999999999999999999999999
Q ss_pred cCCCCCCchhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCC----CCCEEEEecccCccccccceeeeC
Q 018941 75 CATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW----TKPICIGRHAFGDQYRATDTVIQG 150 (348)
Q Consensus 75 g~~~~p~~~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~----~~divivREnteG~Y~g~e~~~~~ 150 (348)
||+++|.. ++|+|+|++|||+||||||+||++ .+|++.++. ++|||||||||||+|+|.+++...
T Consensus 97 Gav~tP~~---------~~~~s~~l~LR~~LdlyanvRPv~--~~~g~~splk~~~~vDivIvREnteg~Y~g~e~~~~~ 165 (409)
T 2e0c_A 97 GPLETPIG---------KGWKSVNVAIRLMLDLYANIRPVK--YIEGLESPLKHPEKVDMIIFRENTDDLYRGIEYPFNS 165 (409)
T ss_dssp CCCC-----------------CHHHHHHHHTTCCEEEEEEE--CCTTCCCSBSCCTTCEEEEEEECSSGGGGCCEECTTS
T ss_pred CCccCCCc---------ccccChhHHHHHHcCCEEEEEEEe--ccCCCCCCCCCccCCcEEEEEcCCCCEeCCcccccCC
Confidence 99999953 258899999999999999999984 455543332 479999999999999999875321
Q ss_pred CCceee-eeecCCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHH
Q 018941 151 PGKLKL-VFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDI 228 (348)
Q Consensus 151 ~g~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~ 228 (348)
++..++ .|... +. ...+++ +.++.+++|||++++||+|+||+||++|+ |+||+|||+|||+.|+|+|+++
T Consensus 166 ~~~~~v~~f~~~------~~-~~~~~~-~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~sdglf~~~ 237 (409)
T 2e0c_A 166 EEAKKIRDFLRK------EL-KVEIED-DTGIGIKVMSKYKTQRITRLAIQYAIEHKRKKVTIMHKGNVMKYTEGAFREW 237 (409)
T ss_dssp HHHHHHHHHHHH------HS-CCCCCS-SEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTTHHHHHHH
T ss_pred Ccccchhhccch------hc-cccCCC-ceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhhHHHHH
Confidence 100000 00000 00 001111 34566789999999999999999999995 6799999999999999999999
Q ss_pred HHHHHHhhhhccccCCC-----------------ceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCcc
Q 018941 229 FQEVYEANWKSKFEAAG-----------------IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSL 290 (348)
Q Consensus 229 ~~eva~key~~~~~~p~-----------------I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~Gsl 290 (348)
|+|||+++| |+ |+++|+|||+||||||++|++| ||||+|||||||||++|+++|||
T Consensus 238 ~~eva~~ey------pd~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~Gsl 311 (409)
T 2e0c_A 238 AYEVALKEY------RDFIVTEEEINQGKPDQGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGNI 311 (409)
T ss_dssp HHHHHHHHS------TTTEEEHHHHTTTCCCTTSEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCG
T ss_pred HHHHHHHhC------CCccccccccccccccCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCc
Confidence 999995599 87 9999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCCCCCceeeecCCcccCCCCcccccCCCCCcChhHHHHHHHHHHHhhhc
Q 018941 291 GLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 291 Glapsanig~~~~~~~fEp~HGSApd~~~~~iaGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
||+||+|||++ ++||||+|||||| |||||+ |||+|+|||++|||+|||+
T Consensus 312 Gl~pSanig~~--~a~fEp~HGSAPd-----iAGk~i-ANP~A~IlS~ammL~~lg~ 360 (409)
T 2e0c_A 312 GMLGGANIGDE--GGMFEAIHGTAPK-----YAGKNV-ANPTGIIKAGELMLRWMGW 360 (409)
T ss_dssp GGCEEEEEETT--EEEEEESSCCCGG-----GTTTTC-SCTHHHHHHHHHHHHHHTC
T ss_pred ccCceEEECCC--ceEEecCCCChhh-----hcCCcc-cCcHHHHHHHHHHHHhCCC
Confidence 99999999964 5899999999999 999999 9999999999999999985
No 20
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=100.00 E-value=7.8e-99 Score=750.18 Aligned_cols=305 Identities=20% Similarity=0.172 Sum_probs=262.1
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhh
Q 018941 10 NPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARV 85 (348)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~ 85 (348)
++|++|||||||||||+++++++.+. +++|+|+++++|.+++++||+++|++|+++|+++||+||||+++|..
T Consensus 28 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav~tP~~--- 104 (412)
T 2iv0_A 28 PIIPYFEGDGIGKDVVPAAIRVLDAAADKIGKEVVWFQVYAGEDAYKLYGNYLPDDTLNAIKEFRVALKGPLTTPVG--- 104 (412)
T ss_dssp BEEEEECCSTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCCSS---
T ss_pred CEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCC---
Confidence 56999999999999999999766444 78999999999999999999999999999999999999999999953
Q ss_pred hHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCC----CCCEEEEecccCccccccceeeeCCCceee-eeec
Q 018941 86 KEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW----TKPICIGRHAFGDQYRATDTVIQGPGKLKL-VFVP 160 (348)
Q Consensus 86 ~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~----~~divivREnteG~Y~g~e~~~~~~g~~~~-~~~~ 160 (348)
++|+|+|++|||+||||||+||++ .+|++.++. ++|||||||||||+|+|.+++...++..++ .|..
T Consensus 105 ------~~~~s~~l~LR~~Ldlyan~RPv~--~~~g~~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v~~~~~ 176 (412)
T 2iv0_A 105 ------GGYRSLNVTIRQVLDLYANVRPVY--YLKGVPSPIKHPEKVNFVIFRENTEDVYAGIEWPRGSEEALKLIRFLK 176 (412)
T ss_dssp ------SSSSHHHHHHHHHTTCCEEEEEEE--CCTTSCCSBSCGGGCEEEEEEECSSSGGGCCEECTTCHHHHHHHHHHH
T ss_pred ------ccccChhHHHHHHcCCeEEEEEEE--ecCCCCCCCCCcCCCCEEEEecCCCCEeCCcccccCCccccchhhccc
Confidence 258899999999999999999984 555544332 479999999999999999875211000000 0000
Q ss_pred CCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHHHhhhhc
Q 018941 161 EGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKS 239 (348)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~ 239 (348)
. +.. ..+++ +.++.+++|||++++||+|+||+||++|+ |+||+|||+|||+.|+|+|+++|+|||+++|
T Consensus 177 ~------~~~-~~~~~-~~a~~~~~~t~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~eva~~ey-- 246 (412)
T 2iv0_A 177 N------EFG-VTIRE-DSGIGIKPISEFATKRLVRMAIRYAIENNRKSVTLVHKGNIMKYTEGAFRDWGYEVAKQEF-- 246 (412)
T ss_dssp H------HHC-CCCCT-TEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTCTTTHHHHHHHHHHHHHHHS--
T ss_pred c------ccc-ccCCC-ceEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECccchhhhhHHHHHHHHHHHHHhC--
Confidence 0 000 01111 33566789999999999999999999995 6799999999999999999999999995599
Q ss_pred cccCCC--------------------ceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCcccccccccc
Q 018941 240 KFEAAG--------------------IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLV 298 (348)
Q Consensus 240 ~~~~p~--------------------I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsani 298 (348)
|+ |+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+||
T Consensus 247 ----pd~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapsani 322 (412)
T 2iv0_A 247 ----GEYCITEDELWDKYGGKQPEGKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNI 322 (412)
T ss_dssp ----TTTEECHHHHHHHHTTCCCTTCEEEEEEEGGGHHHHHHHSGGGCCEEEECHHHHHHHHHHHHHHTTCGGGCEEEEE
T ss_pred ----CCccccccchhhhccccccCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCCccccceEEE
Confidence 77 9999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCCCceeeecCCcccCCCCcccccCCCCCcChhHHHHHHHHHHHhhhc
Q 018941 299 CPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 299 g~~~~~~~fEp~HGSApd~~~~~iaGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
|+. ++||||+|||||| |||||+ |||+|+|||++|||+|||+
T Consensus 323 g~~--~a~fEp~HGSAPd-----iAGk~i-ANP~A~IlS~amML~~lg~ 363 (412)
T 2iv0_A 323 GDG--IGVFEPVHGSAPK-----YAGQNK-VNPTAEILTGALMFEYIGW 363 (412)
T ss_dssp ETT--EEEEEESSCCCST-----TTTSSC-SCCHHHHHHHHHHHHHTTC
T ss_pred CCC--ceEEeCCCCChhh-----cCCCcc-cCcHHHHHHHHHHHHhCCC
Confidence 954 5899999999999 999999 9999999999999999985
No 21
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=100.00 E-value=6.7e-99 Score=739.82 Aligned_cols=290 Identities=18% Similarity=0.126 Sum_probs=257.4
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhh
Q 018941 10 NPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARV 85 (348)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~ 85 (348)
.+|++|||||||||||+++++++.+. +++|+|+++++|++++++||+++|++|+++|+++|++||||+++|...+.
T Consensus 13 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~L~Gavg~P~~~~~ 92 (366)
T 1vlc_A 13 MKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSVGGPKWDDL 92 (366)
T ss_dssp EEEEEEEESTHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCTHHHHHHHSSSSCHHHHHHHHHSSEEEEEECCCGGGTTS
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCccccC
Confidence 48999999999999999999766554 79999999999999999999999999999999999999999999853211
Q ss_pred hHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCC--CCC-------CCCEEEEecccCccccccceeeeCCCceee
Q 018941 86 KEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLI--PGW-------TKPICIGRHAFGDQYRATDTVIQGPGKLKL 156 (348)
Q Consensus 86 ~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~--~~~-------~~divivREnteG~Y~g~e~~~~~~g~~~~ 156 (348)
+ ..+. ...++|++|||+||||||+||+ +.+|++. +++ ++|||||||||||+|+|.+++.. +
T Consensus 93 ~-~~~r-~~~~~~l~LRk~ldlyaN~RP~--~~~pgl~~~splk~~~~~~~vDivIvREnteG~Y~g~~~~~~-~----- 162 (366)
T 1vlc_A 93 P-PEKR-PEIGGLLALRKMLNLYANIRPI--KVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPRGLD-E----- 162 (366)
T ss_dssp C-STTS-HHHHTHHHHHHHTTCCEEEEEE--ECCGGGGGGSSSCHHHHTTCCEEEEEEECSSGGGTEEEEEEC-S-----
T ss_pred C-cccC-cccchhHHHHHHhCCEEEEEEc--cccCCCCCcCCCcccccCCCceEEEEEeCCCCeecCCccccC-C-----
Confidence 0 0000 0012489999999999999998 5566654 232 47999999999999999876531 1
Q ss_pred eeecCCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhh
Q 018941 157 VFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAN 236 (348)
Q Consensus 157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~ke 236 (348)
+.+.++++|||+++|||+|+||+||++|+||||+|||+|||+ ++|+|+++|+||| ++
T Consensus 163 ---------------------~~a~~~~~~Tr~~~eRIar~AFe~A~~rrkkVt~v~KaNvlk-t~glf~~~~~eva-~e 219 (366)
T 1vlc_A 163 ---------------------EKGFDTMIYDRKTVERIARTAFEIAKNRRKKVTSVDKANVLY-SSMLWRKVVNEVA-RE 219 (366)
T ss_dssp ---------------------SCEEEECCCCHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHH-TT
T ss_pred ---------------------CeEEEEEEEcHHHHHHHHHHHHHHHHHcCCeEEEEECCcccc-cchHHHHHHHHHH-HH
Confidence 125567999999999999999999999988999999999999 8999999999998 59
Q ss_pred hhccccCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccC
Q 018941 237 WKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVT 315 (348)
Q Consensus 237 y~~~~~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSAp 315 (348)
| |+|+++++|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+| + .+||||+|||||
T Consensus 220 y------pdV~~~~~~VD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~GslGl~pSanig-~--~alfEpvHGSAP 290 (366)
T 1vlc_A 220 Y------PDVELTHIYVDNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASFG-D--KNLYEPAGGSAP 290 (366)
T ss_dssp C------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHTTSSSCGGGCEEEEES-S--SEEEEESSCCCT
T ss_pred C------CCceEEeeeHHHHHHHHhhCcccceEEEEcchhHHHHHHHHHHhcCccccccEeeeC-C--ceeeecCCCchh
Confidence 9 999999999999999999999999 99999999999999999999999999999999 5 499999999999
Q ss_pred CCCcccccCCCCCcChhHHHHHHHHHHHh-hhc
Q 018941 316 RHYRVHQKGGETSTNSIASIFAWSRGLAH-RYK 347 (348)
Q Consensus 316 d~~~~~iaGk~i~ANP~a~IlS~ammL~~-lg~ 347 (348)
| |||||+ |||+|+|||++|||+| ||+
T Consensus 291 d-----IAGk~i-ANP~A~IlS~ammL~~slg~ 317 (366)
T 1vlc_A 291 D-----IAGKNI-ANPIAQILSLAMMLEHSFGM 317 (366)
T ss_dssp T-----TTTTTC-SCCHHHHHHHHHHHHHHHCC
T ss_pred h-----cCCCCc-cCcHHHHHHHHHHHHHHcCC
Confidence 9 999999 9999999999999999 984
No 22
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=100.00 E-value=4e-99 Score=737.88 Aligned_cols=285 Identities=16% Similarity=0.144 Sum_probs=259.6
Q ss_pred ccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhhhH
Q 018941 8 VANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKE 87 (348)
Q Consensus 8 m~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~~~ 87 (348)
..++|++|||||||||||+++++++.+.+++|+|+++++|. +||+++|++++++|+++|++||||+++|.. +
T Consensus 16 ~~~~I~vipGDGIGpEv~~~~~~Vl~a~~~~i~~~~~~~G~----~~g~~lp~~tl~~~~~~da~l~Gav~~P~~-~--- 87 (349)
T 3blx_A 16 GRFTVTLIPGDGVGKEITDSVRTIFEAENIPIDWETINIKQ----TDHKEGVYEAVESLKRNKIGLKGLWHTPAD-Q--- 87 (349)
T ss_dssp CCEEEEEEEESHHHHHHHHHHHHHHHHTTCSEEEEECCCSS----TTCHHHHHHHHHHHHHHSEEEEEECCSHHH-H---
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHHcCCCeEEEEEecCc----ccCCcCcHHHHHHHHHCCEEEECCccCCCC-C---
Confidence 34799999999999999999997777778999999999998 799999999999999999999999999832 1
Q ss_pred HHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCCC-CCEEEEecccCccccccceeeeCCCceeeeeecCCCCcc
Q 018941 88 FVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWT-KPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEK 166 (348)
Q Consensus 88 ~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~~-~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~g~~~ 166 (348)
..|+|+|++|||+||||+|+||+ +.+|++.++++ +|||||||||||+|+|.+++.. ++
T Consensus 88 ----~~~~s~~l~lR~~ldlyan~RP~--~~~pg~~~~~~~vD~vivREnteg~Y~g~e~~~~-~g-------------- 146 (349)
T 3blx_A 88 ----TGHGSLNVALRKQLDIYANVALF--KSLKGVKTRIPDIDLIVIRENTEGEFSGLEHESV-PG-------------- 146 (349)
T ss_dssp ----HTCHHHHHHHHHTSCEEEEEEEE--ECCTTCCCSSCSCEEEEEEECSSGGGGCEEEECS-TT--------------
T ss_pred ----CCccCchHHHHHHcCCEEEEEEE--eccCCCCCCCCCcCEEEEecCCCCcEeCCceecc-CC--------------
Confidence 25778999999999999999998 67888877664 8999999999999999876421 11
Q ss_pred chhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCCC
Q 018941 167 TELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 245 (348)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r-~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~~p~ 245 (348)
.+..+++|||+++|||+|+||+||++| +||||+|||+|||+.|+|+|+++|+|||+++| |+
T Consensus 147 ------------va~~~~~~T~~~~eRiar~AF~~A~~r~rkkVt~v~KaNvlk~sdglf~~~~~eva~~ey------p~ 208 (349)
T 3blx_A 147 ------------VVESLKVMTRPKTERIARFAFDFAKKYNRKSVTAVHKANIMKLGDGLFRNIITEIGQKEY------PD 208 (349)
T ss_dssp ------------EEEEEEEEEHHHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTTHHHHHHHHHHHHHHHHC------TT
T ss_pred ------------eEEEEEEeCHHHHHHHHHHHHHHHHhcCCCcEEEEeCCccchhhHHHHHHHHHHHHHhhC------CC
Confidence 144578999999999999999999999 57899999999999999999999999985699 99
Q ss_pred ceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCC-cccCCCCccccc
Q 018941 246 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH-GTVTRHYRVHQK 323 (348)
Q Consensus 246 I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~H-GSApd~~~~~ia 323 (348)
|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||++. +||||+| ||||| ||
T Consensus 209 i~~~~~~vD~~~~qlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~--a~fEpvH~GSAPd-----iA 281 (349)
T 3blx_A 209 IDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGGPGLVAGANFGRDY--AVFEPGSRHVGLD-----IK 281 (349)
T ss_dssp SEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEEESSC--EEECCTTTTSCC-------C
T ss_pred eeEEEeeHHHHHHHHhhCcccccEEEECCcchHHHHHHHHhhcCCcccceEEEECCCc--eeEcCCCCCchhh-----hc
Confidence 9999999999999999999999 99999999999999999999999999999999864 8999999 99999 99
Q ss_pred CCCCCcChhHHHHHHHHHHHhhhc
Q 018941 324 GGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 324 Gk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
|||+ |||+|+|||++|||+|||+
T Consensus 282 Gk~i-ANP~A~IlS~ammL~~lg~ 304 (349)
T 3blx_A 282 GQNV-ANPTAMILSSTLMLNHLGL 304 (349)
T ss_dssp CTTC-SCCHHHHHHHHHHHHHHTC
T ss_pred CCCC-CCcHHHHHHHHHHHHhcCc
Confidence 9999 9999999999999999985
No 23
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=100.00 E-value=4.3e-98 Score=727.89 Aligned_cols=279 Identities=19% Similarity=0.193 Sum_probs=257.5
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhh
Q 018941 10 NPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARV 85 (348)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~ 85 (348)
++|++|||||||||||+++++++.+. +++|+|+++++|.+++++||+++|++++++|+++|++||||+++|..
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~t~~~~~~~da~l~Gav~tP~~--- 78 (336)
T 1wpw_A 2 FTVALIQGDGIGPEIVSKSKRILAKINELYSLPIEYIEVEAGDRALARYGEALPKDSLKIIDKADIILKGPVGESAA--- 78 (336)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHHHHHTTCCEEEEEECCSHHHHHHSSSSSCHHHHHHHHTCSEEEECCCCTTHH---
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhhCCCeEEEEEecchHHHHhhCCcCCHHHHHHHHHCCEEEECCcCCCCc---
Confidence 58999999999999999999766544 79999999999999999999999999999999999999999999832
Q ss_pred hHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCCC-CCEEEEecccCccccccceeeeCCCceeeeeecCCCC
Q 018941 86 KEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWT-KPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKD 164 (348)
Q Consensus 86 ~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~~-~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~g~ 164 (348)
. +|++|||+||||+|+||+ +.+|++.++++ +|||||||||||+|+|.++... +
T Consensus 79 ---------~-~~l~lR~~ldlyan~RP~--~~~pg~~~~~~~~D~vivREnteg~Y~g~~~~~~-~------------- 132 (336)
T 1wpw_A 79 ---------D-VVVKLRQIYDMYANIRPA--KSIPGIDTKYGNVDILIVRENTEDLYKGFEHIVS-D------------- 132 (336)
T ss_dssp ---------H-HHHHHHHTTTCCEEEEEE--ECCTTTCCSCSCCEEEEEEECSSBTTTCCEEEEE-T-------------
T ss_pred ---------c-hHHHHHHHhCCEEEEEEE--eccCCCCCCCCCCcEEEEecCccCeEcCCccccC-C-------------
Confidence 2 578999999999999998 67888877664 8999999999999999876531 1
Q ss_pred ccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhccccCC
Q 018941 165 EKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAA 244 (348)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~~~~p 244 (348)
+.+..+++|||+++|||+|+||+||++|+||||+|||+|||+.|+|+|+++|+|||+ +
T Consensus 133 -------------~va~~~~~~T~~~~eRiar~AF~~A~~rrkkvt~v~KaNvlk~t~glf~~~~~eva~-~-------- 190 (336)
T 1wpw_A 133 -------------GVAVGMKIITRFASERIAKVGLNFALRRRKKVTCVHKANVMRITDGLFAEACRSVLK-G-------- 190 (336)
T ss_dssp -------------TEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCTTHHHHHHHHHHHHHT-T--------
T ss_pred -------------CeEEEEEEecHHHHHHHHHHHHHHHHHhCCeEEEEECCcchhhhhHHHHHHHHHHHH-h--------
Confidence 124567899999999999999999999988999999999999999999999999984 2
Q ss_pred CceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCccccc
Q 018941 245 GIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQK 323 (348)
Q Consensus 245 ~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~~ia 323 (348)
+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|++. +||||+|||||| ||
T Consensus 191 ~I~~~~~~vD~~~~~lv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig~~~--a~fEp~HGSApd-----ia 263 (336)
T 1wpw_A 191 KVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPSANIGDKK--ALFEPVHGAAFD-----IA 263 (336)
T ss_dssp TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTCGGGCEEEEECSSC--EEEEESSCCCTT-----TT
T ss_pred CceeEEEeHHHHHHHHhhCcccceEEEEcCcchHHHHHHHHHhcCCccccceEEECCCC--ceEeCCCCCchh-----hC
Confidence 89999999999999999999999 99999999999999999999999999999999865 899999999999 99
Q ss_pred CCCCCcChhHHHHHHHHHHHhhhc
Q 018941 324 GGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 324 Gk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
|||+ |||+|+|||++|||+|||+
T Consensus 264 Gk~i-ANP~A~IlS~ammL~~lg~ 286 (336)
T 1wpw_A 264 GKNI-GNPTAFLLSVSMMYERMYE 286 (336)
T ss_dssp TSSC-CCTHHHHHHHHHHHHHHHH
T ss_pred CCCC-cCcHHHHHHHHHHHHHcCc
Confidence 9999 9999999999999999986
No 24
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=100.00 E-value=1.4e-98 Score=752.61 Aligned_cols=344 Identities=70% Similarity=1.130 Sum_probs=277.3
Q ss_pred cccccccccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 018941 3 FQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (348)
Q Consensus 3 ~~~~~m~~~I~vi~GDGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~ 82 (348)
++||+|+++|++||||||||||++++.++++..+++|+|+++++|++++++||+++|++++++|+++||+||||+++|..
T Consensus 16 ~~k~~~~~~I~~l~GDgig~evl~~~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~et~~ai~~~da~lkGav~tP~~ 95 (427)
T 2qfy_A 16 FSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDE 95 (427)
T ss_dssp CCCEECSSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred cccccceeeEEEecCCCHHHHHHHHHHHHhccCCCceEEEEEecChHHHhccCCcCcHHHHHHHHHCCEEEECCcCCCCC
Confidence 57999999999999999999999999877777789999999999999999999999999999999999999999999975
Q ss_pred hhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCCCCCEEEEecccCccccccceeeeCCCceeeeeecCC
Q 018941 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEG 162 (348)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~~ 162 (348)
.++++.+|.+.|+|+|+.||+.||||+|+||++++++|++.++|+.|++|+||+++|.|.+.++.+.++++.+.-|.++.
T Consensus 96 ~~~~e~~l~~~~~s~~~~lR~~ldlyan~RP~~~~~~~~l~~g~~~pl~i~R~~~g~~y~~~D~vivREnteg~Y~~~e~ 175 (427)
T 2qfy_A 96 ARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSD 175 (427)
T ss_dssp HHHHHTTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCEEEEEEEECSSGGGGCEEEEECSSEEEEEEEEESC
T ss_pred cccchhhhcccccchHHHHHHhcCCEEEecccccccchhhccCCCCCeeEeecccCCccCCeeEEEeccCccceeeeccc
Confidence 55445555567999999999999999999999887888776655444444444444444444444433333211111111
Q ss_pred --CCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhhhcc
Q 018941 163 --KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240 (348)
Q Consensus 163 --g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~ 240 (348)
|.........++++ .++...+++||++++||+|+||+||++|++|||+|||+|||+.|+|+|+++|+|||+++|.++
T Consensus 176 teG~~~~~~~~~~~~~-~~v~~~~~~T~~~ieRIar~AFe~A~~r~~kVt~v~KaNVlk~s~glfr~v~~eva~~eYpd~ 254 (427)
T 2qfy_A 176 PTTAQPQTLKVYDYKG-SGVAMAMYNTDESIEGFAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSK 254 (427)
T ss_dssp TTTSCCEEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHH
T ss_pred cCCccccccccccCCC-ceEEEEEEEcHHHHHHHHHHHHHHHHHhCCceEEEECCccchhhhHHHHHHHHHHHHHhCCCc
Confidence 10000000011111 234444789999999999999999999999999999999999999999999999985699222
Q ss_pred ccCCCceEeeehHHHHHHHHHhCCCCcEEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCCCCcc
Q 018941 241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRV 320 (348)
Q Consensus 241 ~~~p~I~~~~~~VDa~~~~lv~~P~~FViv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~ 320 (348)
|.+.+|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+||+|||+++..+||||+||||||+++.
T Consensus 255 ~~~~~I~~e~~~VD~~amqlV~~P~~FVivt~NlfGDILSD~aA~l~GslGl~pSanig~~~~~~~fEpvHGSAPdi~~~ 334 (427)
T 2qfy_A 255 FEQLGIHYEHRLIDDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAHGTVTRHYRK 334 (427)
T ss_dssp HHHHTCCEEEEEHHHHHHHHHHSCEEEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSCCEEEECCSCCCHHHHHH
T ss_pred ccCCeEEEEEEEHHHHHHHHHhCCCceEEEECccchHHHHHHHHHhcCcccccceeEeCCCCceeEecCCCCCcccccch
Confidence 22222999999999999999999999999999999999999999999999999999999875348999999999954444
Q ss_pred cccCCCCCcChhHHHHHHHHHHHhhhc
Q 018941 321 HQKGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 321 ~iaGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
.|||||++|||+|+|||++|||+|||+
T Consensus 335 diAGk~~~ANP~A~IlS~ammL~~lg~ 361 (427)
T 2qfy_A 335 YQKGEETSTNSIASIFAWSRGLLKRGE 361 (427)
T ss_dssp HHTTCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCccCcHHHHHHHHHHHHHhCc
Confidence 499999339999999999999999985
No 25
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=100.00 E-value=1.1e-97 Score=744.73 Aligned_cols=307 Identities=21% Similarity=0.185 Sum_probs=262.5
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecchhhHhccCC--CCcHHHHHHHHhcCeeeecCCCCC
Q 018941 10 NPIVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDD--KVTVESAEATLKYNVAIKCATITP 80 (348)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~g~--~lp~~~l~~~~~~da~lkg~~~~p 80 (348)
++|++|||||||||||+++++++.+. +++|+|+++++|.+++++||+ ++|++++++|+++||+||||+++|
T Consensus 27 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~etl~~~k~~da~lkGav~tP 106 (429)
T 2d4v_A 27 PIIPFIEGDGIGCDVTPAMRSVVDAAVAKVYGGQRQIAWMELFAGQKAVQLYGEGQYLPDETMAAIREYKVAIKGPLETP 106 (429)
T ss_dssp BEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEECCTHHHHHHHCTTCSSCHHHHHHHHHHCEEEECCCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHhhcCCCCceEEEEEeeehhhhhccCCCCCCcHHHHHHHHHCCEEEECCccCC
Confidence 56999999999999999999765433 389999999999999999999 999999999999999999999999
Q ss_pred CchhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCC----CCCEEEEecccCccccccceeeeCCCceee
Q 018941 81 DEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW----TKPICIGRHAFGDQYRATDTVIQGPGKLKL 156 (348)
Q Consensus 81 ~~~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~----~~divivREnteG~Y~g~e~~~~~~g~~~~ 156 (348)
.. .+|+|+|++|||+||||||+||+ +.+|++.++. ++|||||||||||+|+|++++...++..++
T Consensus 107 ~~---------~~~~s~~l~LRk~LdLyanvRPv--~~~~gv~splk~~~~vDivIvREnTeg~Y~G~e~~~~~~~~~~v 175 (429)
T 2d4v_A 107 VG---------GGIRSLNVAMRQDLDLYVCLRPV--RYFEGTPSPMRHPEKVDMVIFRENSEDIYAGIEWPAGSPEAEKI 175 (429)
T ss_dssp SS---------SSSCCHHHHHHHHTTCCEEEEEE--ECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECTTCHHHHHH
T ss_pred Cc---------ccccChhHHHHHHcCCEEEEEEE--EecCCCCCCCCCcCCCCEEEEEeCCCCeecCcccccCCcccccc
Confidence 53 35899999999999999999998 4555554432 479999999999999999875211100000
Q ss_pred -eeecC-CCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchhHHHHHHHHH
Q 018941 157 -VFVPE-GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVY 233 (348)
Q Consensus 157 -~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~-k~Vt~v~KaNVl~~~~g~f~~~~~eva 233 (348)
.|.+. .| +....+++ +.++..++|||+++|||+|+||+||++|+ |+||+|||+|||+.|+|+|+++|+|||
T Consensus 176 ~~~~~~~~~-----~~~~~~~~-~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva 249 (429)
T 2d4v_A 176 IRFLREEMG-----VTKIRFPD-SSAIGIKPVSTEGSERLIRRTIQYALEHGKPSVSLVHKGNIMKFTEGGFRDWGYALA 249 (429)
T ss_dssp HHHHHHTSC-----CCCCSCGG-GEEEEEEEEEHHHHHHHHHHHHHHHHHTTCSEEEEEECTTTSTTTHHHHHHHHHHHH
T ss_pred eeccccccc-----cccccCCC-ceEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhhHHHHHHHHHHH
Confidence 01000 00 00111221 34556789999999999999999999995 679999999999999999999999999
Q ss_pred HhhhhccccCCC--------------------------------ceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHH
Q 018941 234 EANWKSKFEAAG--------------------------------IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQS 280 (348)
Q Consensus 234 ~key~~~~~~p~--------------------------------I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILS 280 (348)
+++| |+ |+++|+|||+||||||++|++| ||||+||||||||
T Consensus 250 ~~ey------pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~fDVivt~NlfGDILS 323 (429)
T 2d4v_A 250 EREF------AGRVFTWRQKAAISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDYVS 323 (429)
T ss_dssp HHHS------TTTEEEHHHHHHHHHHHCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHH
T ss_pred HHhC------CCccccccccccccccccccccchhccccccCCeeEEEEeeHHHHHHHHhhCcccCcEEEECCcccHHHH
Confidence 5599 87 9999999999999999999999 9999999999999
Q ss_pred hhhhhhcCccccccccccCCCCCceeeecCCcccCCCCcccccCCCCCcChhHHHHHHHHHHHhhhc
Q 018941 281 DFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 281 Dlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd~~~~~iaGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
|++|+++|||||+||+|||+. ++||||+|||||| |||||+ |||+|+|||++|||+|||+
T Consensus 324 D~aA~l~GslGl~pSanig~~--~a~fEpvHGSAPd-----iAGk~i-ANP~A~IlS~amML~hlg~ 382 (429)
T 2d4v_A 324 DALAAEVGGIGMAPGANLSDT--HAIFEATHGTAPD-----IAGQGK-ANPSSLILSAVMMLEHLGW 382 (429)
T ss_dssp HHHHHHTTCGGGCCCEEECSS--CEEEECSCCCCTT-----TTTTTC-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCHhhcCeeEECCC--ceEEecCCCChhH-----hcCCCC-cCcHHHHHHHHHHHHHcCC
Confidence 999999999999999999964 4899999999999 999999 9999999999999999985
No 26
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=100.00 E-value=5.9e-98 Score=745.97 Aligned_cols=308 Identities=21% Similarity=0.235 Sum_probs=263.5
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 018941 10 NPIVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (348)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~ 82 (348)
++|++|||||||||||+++++++.+. +++|+|+++++|.+++++||+++|++|+++|+++||+||||+++|..
T Consensus 20 ~~I~vipGDGIGpEI~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~etl~~~k~~da~lkGav~tP~~ 99 (423)
T 1hqs_A 20 PIIPFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDVIREYFIAIKGPLTTPVG 99 (423)
T ss_dssp BEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCTHHHHHHHSCSSCHHHHHHHHHHCEEEECCCCCCSS
T ss_pred CEEEEECCCCcCHHHHHHHHHHHHHHHhhhcCCCCceEEEEEecCHHHHHhhCCcCcHHHHHHHHHCCEEEECCccCCCC
Confidence 57999999999999999999755332 28999999999999999999999999999999999999999999953
Q ss_pred hhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCCCCC----CCCEEEEecccCccccccceeeeCCCceeee-
Q 018941 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW----TKPICIGRHAFGDQYRATDTVIQGPGKLKLV- 157 (348)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~~~~----~~divivREnteG~Y~g~e~~~~~~g~~~~~- 157 (348)
++|+|+|++|||+||||+|+||+ +.+|++.+++ ++|||||||||||+|+|.+++. .++..+..
T Consensus 100 ---------~~~~s~nl~LRk~LdlyanvRPv--~~~pg~~splk~~~~vDivIvREnteg~Y~G~e~~~-g~~~~~~v~ 167 (423)
T 1hqs_A 100 ---------GGIRSLNVALRQELDLFVCLRPV--RYFTGVPSPVKRPEDTDMVIFRENTEDIYAGIEYAK-GSEEVQKLI 167 (423)
T ss_dssp ---------SSSCCHHHHHHHHTTCCEEEEEE--ECCTTCCCSBSCGGGCEEEEEEECSCGGGGCCEECT-TCHHHHHHH
T ss_pred ---------cCcCChhHHHHHHcCCEEEEEEE--eccCCCCCCCCCCCCCcEEEEecCCCCeeccccccc-CCcccccee
Confidence 36899999999999999999998 5667665543 4799999999999999998752 11100000
Q ss_pred -eecCCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchhHHHHHHHHHHh
Q 018941 158 -FVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEA 235 (348)
Q Consensus 158 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r-~k~Vt~v~KaNVl~~~~g~f~~~~~eva~k 235 (348)
|.+ .+..+....++ ++.+...++|||+++|||+|+||+||++| +++||+|||+|||+.|+|+|+++|+|||++
T Consensus 168 ~~~~----~~~~~~~~~~~-~~~a~~~~~~T~~~~eRiar~AFe~A~~r~rkkVt~v~KaNVlk~t~Glf~~~~~eva~~ 242 (423)
T 1hqs_A 168 SFLQ----NELNVNKIRFP-ETSGIGIKPVSEEGTSRLVRAAIDYAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEK 242 (423)
T ss_dssp HHHH----HHSCCCCCSCG-GGEEEEEEEEEHHHHHHHHHHHHHHHHHHTCSEEEEEECTTTSTTTHHHHHHHHHHHHHH
T ss_pred cccc----ccccccccccC-CceEEEEEEEcHHHHHHHHHHHHHHHHHcCCCcEEEEECCccchhhhHHHHHHHHHHHHH
Confidence 000 00000001112 13455679999999999999999999998 578999999999999999999999999955
Q ss_pred hhhccccCCC--------------------------------ceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhh
Q 018941 236 NWKSKFEAAG--------------------------------IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDF 282 (348)
Q Consensus 236 ey~~~~~~p~--------------------------------I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDl 282 (348)
+| |+ |+++|+|||+||||||++|++| ||||+|||||||||+
T Consensus 243 ey------pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~ 316 (423)
T 1hqs_A 243 EY------GDKVFTWAQYDRIAEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDA 316 (423)
T ss_dssp HH------GGGEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHH
T ss_pred hC------CCcccchhhhccccccccccccccccccccccCeEEEEEeeHHHHHHHHhhCCCCccEEEECCcchHHHHHH
Confidence 99 77 8999999999999999999999 999999999999999
Q ss_pred hhhhcCccccccccccCC-CCCceeeecCCcccCCCCcccccCCCCCcChhHHHHHHHHHHHhhhc
Q 018941 283 LAQGFGSLGLMTSVLVCP-DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 283 aa~l~GslGlapsanig~-~~~~~~fEp~HGSApd~~~~~iaGk~i~ANP~a~IlS~ammL~~lg~ 347 (348)
+|+++|||||+||+|||+ ++ ++||||+|||||| |||||+ |||+|+|||++|||+|||+
T Consensus 317 aA~l~GslGl~pSanigp~~~-~alfEp~HGSAPd-----iAGk~i-ANP~A~IlS~amML~hlg~ 375 (423)
T 1hqs_A 317 LAAQVGGIGIAPGANINYETG-HAIFEATHGTAPK-----YAGLDK-VNPSSVILSGVLLLEHLGW 375 (423)
T ss_dssp HHHHTTCTTTCEEEEECTTTC-CEEEEESCCCCGG-----GTTTTC-SCCHHHHHHHHHHHHHHTC
T ss_pred HHhhcCCcccCccceecCCCC-ceEEecCCCChhh-----hCCCCC-cCcHHHHHHHHHHHHHcCC
Confidence 999999999999999995 33 5999999999999 999999 9999999999999999985
No 27
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=100.00 E-value=3.4e-98 Score=734.82 Aligned_cols=294 Identities=20% Similarity=0.216 Sum_probs=256.5
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCchhh
Q 018941 10 NPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARV 85 (348)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~~~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~~~~ 85 (348)
++|++|||||||||||+++++++.+. +++|+|+++++|.+++++||+++|++++++|+++|++||||+++|.....
T Consensus 2 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~g~~lp~~tl~~~~~~da~l~Gavg~p~~~~~ 81 (358)
T 1a05_A 2 KKIAIFAGDGIGPEIVAAARQVLDAVDQAAHLGLRCTEGLVGGAALDASDDPLPAASLQLAMAADAVILGAVGGPRWDAY 81 (358)
T ss_dssp CEEEEEEESTTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCHHHHHHHHSSSSCHHHHHHHHHCSEEEEEECCCGGGTTS
T ss_pred cEEEEECCCCcCHHHHHHHHHHHHHHHHhcCCceEEEEEeCCcHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCcccC
Confidence 68999999999999999999765443 68999999999999999999999999999999999999999999853211
Q ss_pred hHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCC--CC------CCCCEEEEecccCccccccceeeeCCCceeee
Q 018941 86 KEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLI--PG------WTKPICIGRHAFGDQYRATDTVIQGPGKLKLV 157 (348)
Q Consensus 86 ~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~--~~------~~~divivREnteG~Y~g~e~~~~~~g~~~~~ 157 (348)
+. .+ ..+.+ |++|||+||||+|+||+ +.+|++. ++ .++|||||||||||+|+|.++... +
T Consensus 82 ~~-~~-~~e~~-ll~lRk~ldlyanvRP~--~~~pgl~~~splk~~~~~~vDivIvREnteg~Y~g~~~~~~-~------ 149 (358)
T 1a05_A 82 PP-AK-RPEQG-LLRLRKGLDLYANLRPA--QIFPQLLDASPLRPELVRDVDILVVRELTGDIYFGQPRGLE-V------ 149 (358)
T ss_dssp CG-GG-SHHHH-HHHHHHHHTCCEEEEEE--ECCTTSGGGCSBCHHHHTTCEEEEEEECSSSTTTCSSCEEE-E------
T ss_pred Cc-cc-cchhh-HHHHHHHcCCEEEEEEE--EecCCccCCCCCccccCCCceEEEEEecCCCcccCCcCccc-c------
Confidence 00 00 01223 78999999999999998 5667663 22 147999999999999999754211 0
Q ss_pred eecCCCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchhHHHHHHHHHHhhh
Q 018941 158 FVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANW 237 (348)
Q Consensus 158 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key 237 (348)
. .+ ++.+.++++|||+++|||+|+||+||++|++|||+|||+|||+ ++|+|+++|+||| ++|
T Consensus 150 --~-~~-------------~~~a~~~~~~T~~~~eRiar~AFe~A~~rrkkVt~v~KaNvlk-~~~lf~~~~~eva-~ey 211 (358)
T 1a05_A 150 --I-DG-------------KRRGFNTMVYDEDEIRRIAHVAFRAAQGRRKQLCSVDKANVLE-TTRLWREVVTEVA-RDY 211 (358)
T ss_dssp --E-TT-------------EEEEEEEEEEEHHHHHHHHHHHHHHHHTTTSEEEEEECTTTCH-HHHHHHHHHHHHG-GGC
T ss_pred --C-CC-------------CceEEEEEEEcHHHHHHHHHHHHHHHHhcCCeEEEEECCcccc-cchhHHHHHHHHH-HHC
Confidence 0 00 0235567999999999999999999999988999999999999 7999999999998 699
Q ss_pred hccccCCCceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCceeeecCCcccCC
Q 018941 238 KSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTR 316 (348)
Q Consensus 238 ~~~~~~p~I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~~~fEp~HGSApd 316 (348)
|+|+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+||| ++ ++||||+||||||
T Consensus 212 ------pdI~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~GslGl~pSanig-~~-~~~fEpvHGSAPd 283 (358)
T 1a05_A 212 ------PDVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLG-EG-RAMYEPIHGSAPD 283 (358)
T ss_dssp ------TTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSCGGGCEEEEEC-SS-CEEEEESSCCCGG
T ss_pred ------CCceEEeeeHHHHHHHHHhCCCcccEEEecCcccHhHHHHHHhhcCCccccceeeeC-CC-ceeeecCCCChhH
Confidence 999999999999999999999999 99999999999999999999999999999999 55 5999999999999
Q ss_pred CCcccccCCCCCcChhHHHHHHHHHHHh-hhc
Q 018941 317 HYRVHQKGGETSTNSIASIFAWSRGLAH-RYK 347 (348)
Q Consensus 317 ~~~~~iaGk~i~ANP~a~IlS~ammL~~-lg~ 347 (348)
|||||+ |||+|+|||++|||+| ||+
T Consensus 284 -----iAGk~i-ANP~A~IlS~ammL~~~lg~ 309 (358)
T 1a05_A 284 -----IAGQDK-ANPLATILSVAMMLRHSLNA 309 (358)
T ss_dssp -----GTTTTC-SCCHHHHHHHHHHHHHTSSC
T ss_pred -----hcCCCc-cCcHHHHHHHHHHHHHHcCC
Confidence 999999 9999999999999999 984
No 28
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=100.00 E-value=1.3e-97 Score=745.18 Aligned_cols=308 Identities=19% Similarity=0.108 Sum_probs=261.2
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 018941 10 NPIVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (348)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~~~~~~-------~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg~~~~p~~ 82 (348)
++|++|||||||||||+++++++.+. +++|+|+++++|.+++++||+++|++|+++|+++||+||||+++|..
T Consensus 36 ~~I~vipGDGIGpEV~~~a~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~~k~~da~LkGav~tP~~ 115 (435)
T 1tyo_A 36 PVVAFIRGDGVGPEVVESALKVVDAAVKKVYGGSRRIVWWELLAGHLAREKCGELLPKATLEGIRLARVALKGPLETPVG 115 (435)
T ss_dssp BEEEEECCSTTHHHHHHHHHHHHHHHHHHHHTTSCCCEEEECCCSHHHHHHHSSSSCHHHHHHHHHHSEEEECCCCCCTT
T ss_pred CEEEEECCCCcCHHHHHHHHHHHHHHHHhhcCCCcceEEEEEechHHHHHhhCCcCCHHHHHHHHhCCeEEECCccCCCc
Confidence 67999999999999999999765433 38999999999999999999999999999999999999999999953
Q ss_pred hhhhHHHhhhcCCCcchHHhhhcCceEEeecccccCCCCCC-CCCCCCEEEEecccCccccccceeeeCCCceeeeeecC
Q 018941 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLI-PGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPE 161 (348)
Q Consensus 83 ~~~~~~~l~~~~~s~~~~lR~~ldlyanvRPv~~~~~p~~~-~~~~~divivREnteG~Y~g~e~~~~~~g~~~~~~~~~ 161 (348)
++|+|+|++|||+||||||+||+++.++|++. ..+++|||||||||||+|+|.+++.. ++.....+.-
T Consensus 116 ---------~~~~s~~l~LRk~LdlyanlRPv~~~gv~splk~~~~vDivIvREnTeg~Y~G~e~~~~-~~~~~~v~~~- 184 (435)
T 1tyo_A 116 ---------TGYRSLNVAIRQALDLYANIRPVRYYGQPAPHKYADRVDMVIFRENTEDVYAGIEWPHD-SPEAARIRRF- 184 (435)
T ss_dssp ---------SCTTHHHHHHHHHHTCCEEEEEEECCSCCCSBTTGGGCEEEEEEECSSSGGGCCEECTT-SHHHHHHHHH-
T ss_pred ---------ccccChhHHHHHHcCCEEEeEEEEecCCCCCCCCcCCCcEEEEecCCCCeecccccccC-Cccccceecc-
Confidence 35889999999999999999999633444222 11358999999999999999987421 1100000000
Q ss_pred CCCccchhhhccccCCcceeeeeeeChHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchhHHHHHHHHHHhhhhcc
Q 018941 162 GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240 (348)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~Tr~~~eRiar~AFe~A~~r-~k~Vt~v~KaNVl~~~~g~f~~~~~eva~key~~~ 240 (348)
. .+.....++ ++.+..+++|||++++||+|+||+||++| +++||+|||+|||+.|+|+|+++|+|||+++|
T Consensus 185 ---~-~~~~~~~~~-~~~a~~~~~~T~~~~eRIar~AFe~A~~r~rkkVT~v~KaNVlk~tdGlf~~~~~eva~~ey--- 256 (435)
T 1tyo_A 185 ---L-AEEFGISIR-EDAGIGVKPISRFATRRLMERALEWALRNGNTVVTIMHKGNIMKYTEGAFMRWAYEVALEKF--- 256 (435)
T ss_dssp ---H-HHHHCCCCC-TTEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTSTTTHHHHHHHHHHHHHHHS---
T ss_pred ---c-hhhccccCC-CCeEEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhhhHHHHHHHHHHHHHhC---
Confidence 0 000000011 13456679999999999999999999998 57899999999999999999999999995599
Q ss_pred ccCCC--------------------ceEeeehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccC
Q 018941 241 FEAAG--------------------IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVC 299 (348)
Q Consensus 241 ~~~p~--------------------I~~~~~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig 299 (348)
|+ |+++|+|||+||||||++|++| ||||+|||||||||++|+++|||||+||+|||
T Consensus 257 ---pd~~~~e~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~GslGlapSanig 333 (435)
T 1tyo_A 257 ---REHVVTEQEVQEKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVGGIGMAAGMNMG 333 (435)
T ss_dssp ---GGGEEEHHHHHHHSTTCCCTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTCGGGCEEEEEC
T ss_pred ---CCcccccccccccccccccCCeEEEEeeeHHHHHHHHhhCCCCceEEEEcccchHHHHHHHHhhcCCcccCceeeEC
Confidence 77 9999999999999999999999 99999999999999999999999999999999
Q ss_pred CCCCceeeecCCcccCCCCcccccCCCCCcChhHHHHHHHHHH-Hhhhc
Q 018941 300 PDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGL-AHRYK 347 (348)
Q Consensus 300 ~~~~~~~fEp~HGSApd~~~~~iaGk~i~ANP~a~IlS~ammL-~~lg~ 347 (348)
++. +||||+|||||| |||||+ |||+|+|||++||| +|||+
T Consensus 334 ~~~--a~fEpvHGSAPd-----iAGk~i-ANP~A~IlS~amML~~hlg~ 374 (435)
T 1tyo_A 334 DGI--AVAEPVHGTAPK-----YAGKDL-INPSAEILSASLLIGEFMGW 374 (435)
T ss_dssp SSC--EEEEESSCCCGG-----GTTSSC-SCCHHHHHHHHHHHHTTSCC
T ss_pred CCc--eeeecCCCChHH-----hcCCCC-cCcHHHHHHHHHHHHHHcCC
Confidence 764 899999999999 999999 99999999999999 99985
No 29
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=94.73 E-value=0.017 Score=55.87 Aligned_cols=141 Identities=14% Similarity=0.042 Sum_probs=86.4
Q ss_pred eeeChHHHHHHHHHHHHHHHhCC--CCEEEEeCCCcccccchhH-HHHHHHHH--HhhhhccccCCCceE-eeehHHHHH
Q 018941 184 MYNTDESIRAFAEASMNTAYQKK--WPLYLSTKNTILKKYDGRF-KDIFQEVY--EANWKSKFEAAGIWY-EHRLIDDMV 257 (348)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~r~--k~Vt~v~KaNVl~~~~g~f-~~~~~eva--~key~~~~~~p~I~~-~~~~VDa~~ 257 (348)
..+|.+.+.+.++...++-++-+ ++-..|-==|==.--.|+| +|..+.+. -++. ++.+|.+ -..=-|.+.
T Consensus 180 ~~it~e~i~~~i~~~~~L~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~PAi~~~----r~~Gi~~~GP~paDT~F 255 (330)
T 2hi1_A 180 DTLSTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGENGLFGDEETRILTPAITDA----RAKGMDVYGPCPPDTVF 255 (330)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTTCSSCEEEEECSSGGGSSTTSCCHHHHHTHHHHHHHH----HTTTCEEEEEECHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCCHhHHHHHHHHHHHH----HHCCCceeCCCCchhhc
Confidence 35899999999999999333233 3322332233222224566 44333221 0122 2246665 366778776
Q ss_pred HHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCC-ceeeecCCcccCCCCcccccCCCCCcChhHHH
Q 018941 258 AYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIASI 335 (348)
Q Consensus 258 ~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~-~~~fEp~HGSApd~~~~~iaGk~i~ANP~a~I 335 (348)
.+-.+ ++| ++||. | =|.+-.-.--+|+--+.|+-- +. .----|-||||.| |||||+ |||.+|+
T Consensus 256 ~~~~~--~~~D~vlaM--Y----HDQGlip~K~l~F~~gVNvTl-GLP~iRTSvDHGTAfD-----IAGkG~-A~~~Sl~ 320 (330)
T 2hi1_A 256 LQAYE--GQYDMVVAM--Y----HDQGHIPLKLLGFYDGVNITA-GLPFIRTSADHGTAFD-----IAWTGK-AKSESMA 320 (330)
T ss_dssp HHHHT--TSCSEEEES--S----HHHHHHHHHHCC-CCSEEEEE-TSSSEEEEESCCCCTT-----TTTTTC-CCCHHHH
T ss_pred ccccc--ccCCEEEEc--c----cccccHhHhhcccCcceEEec-CCCEEEecCCCCcccc-----ccCCCC-CChHHHH
Confidence 55544 688 66653 3 377766667777777778731 11 1334688999999 999999 9999999
Q ss_pred HHHHHHHH
Q 018941 336 FAWSRGLA 343 (348)
Q Consensus 336 lS~ammL~ 343 (348)
-+.-+..+
T Consensus 321 ~Ai~~A~~ 328 (330)
T 2hi1_A 321 VSIKLAMQ 328 (330)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
No 30
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=94.72 E-value=0.017 Score=56.12 Aligned_cols=136 Identities=11% Similarity=-0.025 Sum_probs=75.4
Q ss_pred eeeChHHHHHHHHHHHHHHHhCC--C-CEEEEeCCCcccccchhH-HHHHHHH--HHhhhhccccCCCceEe-eehHHHH
Q 018941 184 MYNTDESIRAFAEASMNTAYQKK--W-PLYLSTKNTILKKYDGRF-KDIFQEV--YEANWKSKFEAAGIWYE-HRLIDDM 256 (348)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~r~--k-~Vt~v~KaNVl~~~~g~f-~~~~~ev--a~key~~~~~~p~I~~~-~~~VDa~ 256 (348)
..+|.+.+.+.++...+.-++-+ + |+-+. ==|==.--.|.| +|.-+-+ |-++.| +.++.+. ..=-|.+
T Consensus 195 ~~It~~~I~~~i~~~~~~l~~fgi~~PrIaV~-GLNPHaGE~G~~G~EE~~iI~Pai~~l~----~~gi~v~GP~paDt~ 269 (349)
T 4aty_A 195 ARLDQRHVERAARAAVQALQLMGIAHPVVGLM-GINPHAGEGGLFGRDDIDITEPVARKLR----DDGMTVIGPQGADLL 269 (349)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTC-CCCCEEEE-CSSGGGGTTTTTCSHHHHTHHHHHHHHH----HC-CCEEEEECHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcCCCCceEEE-ecCCCCCccccccchHHHHHHHHHHHHH----HCCCeEeCCCchhhh
Confidence 35788888888887766655544 2 33321 112112124555 2322211 111221 1344443 4556654
Q ss_pred HHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCcccccccccc--CCCCCceeeecCCcccCCCCcccccCCCCCcChhH
Q 018941 257 VAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLV--CPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIA 333 (348)
Q Consensus 257 ~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsani--g~~~~~~~fEp~HGSApd~~~~~iaGk~i~ANP~a 333 (348)
. .+.+| ++|+ ||= |.+-.-.--+++--+.|+ |=. .----|-||||.| |||||+ |||.+
T Consensus 270 F-----~~~~~D~vla--MYH----DQgl~p~K~l~f~~~vnitlGLp--~iRtS~dHGta~d-----iagkg~-a~~~s 330 (349)
T 4aty_A 270 L-----TNPDIDVFVA--MYH----DQGHIPVKLRAGRHSAALSIGAG--VLFSSVGHGSGFD-----IAGTLL-ADPAP 330 (349)
T ss_dssp T-----TCTTCSEEEE--SSH----HHHHHHHHHHHTTSEEEEEESSS--SEEEECCSCCCTT-----STTTTC-CCCHH
T ss_pred h-----ccCCCCEEEE--ccc----ccchHHHHhcccCCcEEEecCCC--eeEeCCCCChhhh-----hccCCC-CChHH
Confidence 3 24578 7777 442 454333334444455565 211 1233688999999 999999 99999
Q ss_pred HHHHHHHHHH
Q 018941 334 SIFAWSRGLA 343 (348)
Q Consensus 334 ~IlS~ammL~ 343 (348)
++-|.-|...
T Consensus 331 ~~~Ai~~a~~ 340 (349)
T 4aty_A 331 LLGAIRLVTT 340 (349)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988877654
No 31
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=94.60 E-value=0.017 Score=55.83 Aligned_cols=142 Identities=15% Similarity=0.035 Sum_probs=86.3
Q ss_pred eeeChHHHHHHHHHHHHHHHhC-C--CCEEEEeCCCcccccchhH-HHHHHHHH--HhhhhccccCCCceEe-eehHHHH
Q 018941 184 MYNTDESIRAFAEASMNTAYQK-K--WPLYLSTKNTILKKYDGRF-KDIFQEVY--EANWKSKFEAAGIWYE-HRLIDDM 256 (348)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~r-~--k~Vt~v~KaNVl~~~~g~f-~~~~~eva--~key~~~~~~p~I~~~-~~~VDa~ 256 (348)
..+|.+.+.+.++...+--+++ + ++-..|-==|==.--.|+| +|..+.+. -++. ++.+|.+. ..=-|.+
T Consensus 173 ~~it~e~i~~~i~~~~~~L~~~fgi~~PrIaV~GLNPHAGE~G~~G~EE~~iI~Pai~~~----r~~Gi~~~GP~paDT~ 248 (328)
T 1yxo_A 173 DAISDERLTRVARILHADLRDKFGIAHPRILVCGLNPHAGEGGHLGREEIEVIEPCLERL----RGEGLDLIGPLPADTL 248 (328)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGTTTTTCSHHHHTHHHHHHHH----HTTTCEEEEEECHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCCHhHHHHHHHHHHHH----HHCCCceeCCCCchhh
Confidence 3489999999999888855542 3 3322332233222224566 33332221 0122 12456653 6667776
Q ss_pred HHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCC-ceeeecCCcccCCCCcccccCCCCCcChhHH
Q 018941 257 VAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIAS 334 (348)
Q Consensus 257 ~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~-~~~fEp~HGSApd~~~~~iaGk~i~ANP~a~ 334 (348)
..+-.+ ++| ++||. | =|.+-.-.--+|+--+.|+-- +. .----|-||||.| |||||+ |||.+|
T Consensus 249 F~~~~~--~~~D~vlaM--Y----HDQGlip~K~l~F~~gVNvTl-GLP~iRTSvDHGTAfD-----IAGkG~-A~~~Sl 313 (328)
T 1yxo_A 249 FTPKHL--EHCDAVLAM--Y----HDQGLPVLKYKGFGAAVNVTL-GLPIIRTSVDHGTALD-----LAGSGR-IDSGSL 313 (328)
T ss_dssp TSHHHH--TTCSEEEES--S----HHHHHHHHHHHHTTSCEEEEE-SSSSCEEEECSCCCGG-----GTTTCC-CCCHHH
T ss_pred cccccc--cCCCEEEEc--c----cccccHhHhhcccCcceEEec-CCCEEEecCCCCcccc-----ccCCCC-CChHHH
Confidence 655544 578 66653 3 267766666677777777721 11 1234688999999 999999 999999
Q ss_pred HHHHHHHHHh
Q 018941 335 IFAWSRGLAH 344 (348)
Q Consensus 335 IlS~ammL~~ 344 (348)
+-+.-+..+.
T Consensus 314 ~~Ai~~A~~~ 323 (328)
T 1yxo_A 314 QVALETAYQM 323 (328)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888776653
No 32
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=94.52 E-value=0.018 Score=55.73 Aligned_cols=140 Identities=14% Similarity=0.025 Sum_probs=84.4
Q ss_pred eeeChHHHHHHHHHHHHHHHhC-C---CCEEEEeCCCcccccchhH-HHHHHHHH--HhhhhccccCCCceEe-eehHHH
Q 018941 184 MYNTDESIRAFAEASMNTAYQK-K---WPLYLSTKNTILKKYDGRF-KDIFQEVY--EANWKSKFEAAGIWYE-HRLIDD 255 (348)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~r-~---k~Vt~v~KaNVl~~~~g~f-~~~~~eva--~key~~~~~~p~I~~~-~~~VDa 255 (348)
..+|.+.+.+.++.+.+--+++ + -|+-+.- =|==.--.|+| +|..+.+. -++.+ +-++.++ .+--|.
T Consensus 178 ~~it~e~i~~~i~~~~~~l~~~fGi~~PrIAV~g-LNPHAGE~G~~G~EE~~iI~PAi~~lr----~~Gi~~~GP~paDt 252 (334)
T 3lxy_A 178 GAITQASLHEVITILDNDLKTKFGITQPQIYVCG-LNPHAGEGGHMGHEEIDTIIPALNTLR----QQGINLIGPLPADT 252 (334)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEEC-SSGGGGGGGTTCSHHHHTHHHHHHHHH----HTTCCEEEEECHHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEe-cCCCCCCCCCCCchhHHHHHHHHHHHH----HCCCceeCCCChHH
Confidence 3479999999999988876653 3 2455431 11111113444 22222211 01111 1356554 677787
Q ss_pred HHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCC-ceeeecCCcccCCCCcccccCCCCCcChhH
Q 018941 256 MVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHYRVHQKGGETSTNSIA 333 (348)
Q Consensus 256 ~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~-~~~fEp~HGSApd~~~~~iaGk~i~ANP~a 333 (348)
+..+-.+ ++| ++||.+.+ .+-.-.--+|+--+.|+-- +. .----|-||||.| |||||+ |||.+
T Consensus 253 ~F~~~~~--~~~D~vlaMYHD------QGlip~K~l~F~~gVNvTl-GLP~iRTS~DHGTAfD-----IAGkG~-A~~~S 317 (334)
T 3lxy_A 253 LFQPKYL--QHADAVLAMYHD------QGLPVLKYQGFGRAVNITL-GLPFIRTSVDHGTALE-----LAATGT-ADVGS 317 (334)
T ss_dssp HTSHHHH--TTCSEEEESSHH------HHHHHHHHHHTTCCEEEEE-SSSSCEEEESSCCCGG-----GTTTTC-SCCHH
T ss_pred hcChhhh--ccCCEEEEcccc------hhhHhHHhcccCccEEEec-CCCeeeecCCCCcchh-----hccCCC-CChHH
Confidence 7665554 689 88888764 5544445556666667621 11 1233688999999 999999 99999
Q ss_pred HHHHHHHHHH
Q 018941 334 SIFAWSRGLA 343 (348)
Q Consensus 334 ~IlS~ammL~ 343 (348)
|+-+.-+..+
T Consensus 318 ~~~Ai~~A~~ 327 (334)
T 3lxy_A 318 FITALNLAIK 327 (334)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888776654
No 33
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp}
Probab=93.92 E-value=0.033 Score=54.51 Aligned_cols=79 Identities=14% Similarity=0.021 Sum_probs=50.6
Q ss_pred ehHHHHHHHHHhCCCCc-EEEeCCcccchHHhhhhhhcCccccccccccCCCCCc-eeeecCCcccCCCCcccccCCC-C
Q 018941 251 RLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKT-IEAEAAHGTVTRHYRVHQKGGE-T 327 (348)
Q Consensus 251 ~~VDa~~~~lv~~P~~F-Viv~~NlfGDILSDlaa~l~GslGlapsanig~~~~~-~~fEp~HGSApd~~~~~iaGk~-i 327 (348)
.=-|.+..+-.+ ++| .+|| || =|.+-.-.--+|+--+.|+-- +.+ .---|-||||.| ||||| +
T Consensus 282 ~paDT~F~~~~~--~~~D~vlA--MY----HDQGliplK~l~F~~gVNvTl-GLP~IRTSvDHGTAfD-----IAGkG~~ 347 (367)
T 3tsn_A 282 LVADTAFTKTGL--KNCNRLVA--MY----HDLALAPLKALYFDKSINVSL-NLPIIRVSVDHGTAFD-----KAYKNAK 347 (367)
T ss_dssp BCHHHHTSHHHH--HHCCEEEE--SS----HHHHHHHHHHHCTTTCEEEEE-SSSSCEEECCCCSCTT-----SCSSCCC
T ss_pred cCchhhhccchh--cCCCEEEE--cc----ccCcchhhhhcccCccEEEec-CCCeeeecCCCCcchh-----hcCCCCc
Confidence 444554433322 467 6665 33 356555555566666667621 111 233678999999 99999 9
Q ss_pred CcChhHHHHHHHHHHHh
Q 018941 328 STNSIASIFAWSRGLAH 344 (348)
Q Consensus 328 ~ANP~a~IlS~ammL~~ 344 (348)
|||.+|+-+..+..+.
T Consensus 348 -Ad~~Sl~~Ai~~A~~~ 363 (367)
T 3tsn_A 348 -INTKSYFEAAKFAINL 363 (367)
T ss_dssp -CCCHHHHHHHHHHHHS
T ss_pred -CChHHHHHHHHHHHHh
Confidence 9999999888877653
No 34
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A*
Probab=92.91 E-value=0.61 Score=48.02 Aligned_cols=155 Identities=14% Similarity=0.158 Sum_probs=103.0
Q ss_pred eeeeeeeChHHHHHHHHHHHHHHHhCCCCEEE-EeCCCcccccchhHHHHHHHHHHhhhhccccCCCceEeee-hHHHHH
Q 018941 180 VALSMYNTDESIRAFAEASMNTAYQKKWPLYL-STKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR-LIDDMV 257 (348)
Q Consensus 180 ~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~-v~KaNVl~~~~g~f~~~~~eva~key~~~~~~p~I~~~~~-~VDa~~ 257 (348)
+|-.+-.-..-++.+++.|-+.||..+-+..+ .|+ | +..| .+....| +.|.......++.++-+ -++++-
T Consensus 451 IwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~-~--RaHD---a~lI~kV--~~yL~~hdt~GLdi~Im~p~~A~~ 522 (738)
T 2b0t_A 451 IWRACQVKDAPIQDWVKLAVTRSRLSGMPAVFWLDP-E--RAHD---RNLASLV--EKYLADHDTEGLDIQILSPVEATQ 522 (738)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEECCT-T--CHHH---HHHHHHH--HHHHTTSCCTTCCEEEECHHHHHH
T ss_pred chhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCC-C--CccH---HHHHHHH--HHHHHhcCCCCCceEeeCHHHHHH
Confidence 55445556778999999999999999876444 333 2 2223 3444555 25554445567777766 566665
Q ss_pred HHHHhC-CCCc-EEEeCCcccchHHhhhhhh--cCc---cccccccccCCCCCceeeec-CCcccCCCCcccccCCCCCc
Q 018941 258 AYALKS-EGGY-VWACKNYDGDVQSDFLAQG--FGS---LGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRVHQKGGETST 329 (348)
Q Consensus 258 ~~lv~~-P~~F-Viv~~NlfGDILSDlaa~l--~Gs---lGlapsanig~~~~~~~fEp-~HGSApd~~~~~iaGk~i~A 329 (348)
.-|=+= -+.- +=||-|..=|.|+||.--| --| |.+.|=.| .+ +|||. ..||||+|..+.+.---.+=
T Consensus 523 ~slerir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~---GG--GLfETGAGGSAPKHVqQ~~eEnhLRW 597 (738)
T 2b0t_A 523 LSIDRIRRGEDTISVTGNVLRDYNTDLFPILELGTSAKMLSVVPLMA---GG--GLFETGAGGSAPKHVQQVQEENHLRW 597 (738)
T ss_dssp HHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSCEEEEEBTT---SC--EEEECCSSCCCHHHHHHHHHHSCCCC
T ss_pred HHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhccccc---CC--ccccCCCCcCchHHHHHHHHcCccch
Confidence 555432 2333 8899999999999998743 222 23333333 22 79998 56899998877443222338
Q ss_pred ChhHHHHHHHHHHHhhhc
Q 018941 330 NSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 330 NP~a~IlS~ammL~~lg~ 347 (348)
+.+|-+|+++--|+||++
T Consensus 598 DSLGEFlALa~Sle~l~~ 615 (738)
T 2b0t_A 598 DSLGEFLALAESFRHELN 615 (738)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhHHHHHh
Confidence 899999999999999985
No 35
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A*
Probab=92.89 E-value=0.61 Score=48.04 Aligned_cols=155 Identities=16% Similarity=0.179 Sum_probs=103.1
Q ss_pred eeeeeeeChHHHHHHHHHHHHHHHhCCCCEEE-EeCCCcccccchhHHHHHHHHHHhhhhccccCCCceEeee-hHHHHH
Q 018941 180 VALSMYNTDESIRAFAEASMNTAYQKKWPLYL-STKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR-LIDDMV 257 (348)
Q Consensus 180 ~~~~~~~Tr~~~eRiar~AFe~A~~r~k~Vt~-v~KaNVl~~~~g~f~~~~~eva~key~~~~~~p~I~~~~~-~VDa~~ 257 (348)
+|-.+-.-..-++-+++.|-+.||..+-+..+ .|+ | +..| .+....| +.|.......++.++-+ -++++-
T Consensus 455 IwRmcq~KDapI~DWVkLAV~Rar~sg~pavFWLD~-~--RaHD---a~lI~kV--~~yL~~hdt~GLdi~Im~p~~A~~ 526 (741)
T 1itw_A 455 IWRMCQAKDAPIQDWVKLAVNRARATNTPAVFWLDP-A--RAHD---AQVIAKV--ERYLKDYDTSGLDIRILSPVEATR 526 (741)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHTCCEEEECCT-T--SHHH---HHHHHHH--HHHHTTSCCTTCCEEEECHHHHHH
T ss_pred chhhhhccCchHHHHHHHHHHHHHhcCCCeEEeeCC-C--CccH---HHHHHHH--HHHHHhcCCCCCceEeeCHHHHHH
Confidence 55445556778999999999999999876444 333 2 2223 3444555 25554445567777766 566665
Q ss_pred HHHHhC-CCCc-EEEeCCcccchHHhhhhhh--cCc---cccccccccCCCCCceeeec-CCcccCCCCcccccCCCCCc
Q 018941 258 AYALKS-EGGY-VWACKNYDGDVQSDFLAQG--FGS---LGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRVHQKGGETST 329 (348)
Q Consensus 258 ~~lv~~-P~~F-Viv~~NlfGDILSDlaa~l--~Gs---lGlapsanig~~~~~~~fEp-~HGSApd~~~~~iaGk~i~A 329 (348)
.-|=+= -+.- +=||-|..=|.|+||.--| --| |.+.|=.| .+ +|||. ..||||+|..+.+.---.+=
T Consensus 527 ~sleRir~G~dTISVTGNVLRDYLTDLFPIlELGTSAKMLSIVPLm~---GG--GLfETGAGGSAPKHVqQ~~eEnhLRW 601 (741)
T 1itw_A 527 FSLARIREGKDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMS---GG--GLFETGAGGSAPKHVQQFLEEGYLRW 601 (741)
T ss_dssp HHHHHHHTTCCCEEEECHHHHHHHHHHHHHHHHSCSSSSEEEEEBTT---SC--EEEESCSSCCCHHHHHHHHHHSCCCC
T ss_pred HHHHHHHcCCCeEEeechhhhhhccccchhhhhccchhHhhhccccc---CC--ccccCCCCcCchHHHHHHHHcCccch
Confidence 555432 2333 8899999999999998743 222 23333333 22 79998 56899998877443222338
Q ss_pred ChhHHHHHHHHHHHhhhc
Q 018941 330 NSIASIFAWSRGLAHRYK 347 (348)
Q Consensus 330 NP~a~IlS~ammL~~lg~ 347 (348)
+.+|-+|+++--|+||++
T Consensus 602 DSLGEFlALa~Sle~l~~ 619 (741)
T 1itw_A 602 DSLGEFLALAASLEHLGN 619 (741)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhHHHHHh
Confidence 899999999999999985
No 36
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=74.08 E-value=0.56 Score=46.73 Aligned_cols=16 Identities=6% Similarity=-0.211 Sum_probs=14.9
Q ss_pred CCCEEEEecccCcccc
Q 018941 127 TKPICIGRHAFGDQYR 142 (348)
Q Consensus 127 ~~divivREnteG~Y~ 142 (348)
++|++|+||||||+|+
T Consensus 156 ~~D~vivREnteg~Y~ 171 (427)
T 2qfy_A 156 ATDTLIPGPGSLELVY 171 (427)
T ss_dssp CEEEEECSSEEEEEEE
T ss_pred CeeEEEeccCccceee
Confidence 4799999999999999
No 37
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=41.56 E-value=65 Score=27.85 Aligned_cols=84 Identities=17% Similarity=0.265 Sum_probs=48.9
Q ss_pred ccccEEEECC----CCchHHHHHHHHHHHhcCCCceEEEEEecch-hhHhc-cCCCCcHHH---HHHHHhcCeeeecCCC
Q 018941 8 VANPIVEMDG----DEMTRVFWKSIKDKLIFPFLELDIKYFDLGL-PNRDA-TDDKVTVES---AEATLKYNVAIKCATI 78 (348)
Q Consensus 8 m~~~I~vi~G----DGIGpEv~~~~~~~~~~~~~~i~~~~~~~G~-~~~~~-~g~~lp~~~---l~~~~~~da~lkg~~~ 78 (348)
|.++|++|-| +-.+..+.+.+.+ ....+ ++++.+++.. ..|.. .....|+++ .+.++++|+.+.+
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~-~~~~~--~~~~~idl~dLP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~--- 74 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQK-LAEGR--LEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVLAI--- 74 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHH-HHTTT--EEEEECCGGGSCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEE---
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHH-hccCC--CEEEEEecccCCCCCCCcccCCCHHHHHHHHHHHhCCcEEEe---
Confidence 6789999988 3566777776653 44434 4555555542 01111 111246544 4678899998865
Q ss_pred CCCchhhhHHHhhhcCCCcchHHhhhcCce
Q 018941 79 TPDEARVKEFVLKQMWKSPNGTIRNILNGT 108 (348)
Q Consensus 79 ~p~~~~~~~~~l~~~~~s~~~~lR~~ldly 108 (348)
||... .|.-..|..-||..
T Consensus 75 tPeYn-----------~s~pg~LKn~iDwl 93 (190)
T 3u7r_A 75 TPEYN-----------RSYPGMIKNAIDWA 93 (190)
T ss_dssp CCCBT-----------TBCCHHHHHHHHHH
T ss_pred chhhc-----------ccCCHHHHHHHHHh
Confidence 56542 34446888888853
No 38
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=40.04 E-value=16 Score=34.97 Aligned_cols=21 Identities=5% Similarity=0.026 Sum_probs=16.9
Q ss_pred ccccEEEECCC--CchHHHHHHH
Q 018941 8 VANPIVEMDGD--EMTRVFWKSI 28 (348)
Q Consensus 8 m~~~I~vi~GD--GIGpEv~~~~ 28 (348)
|+.+|++-.|| ||||||+-.+
T Consensus 1 m~~~iaIT~GDpaGIGpEii~ka 23 (328)
T 1yxo_A 1 MSLRFALTPGEPAGIGPDLCLLL 23 (328)
T ss_dssp CCCCEEEECCSTTSSHHHHHHHH
T ss_pred CCCEEEEcCCCCcchhHHHHHHH
Confidence 44569999998 9999987655
No 39
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=30.23 E-value=31 Score=33.07 Aligned_cols=20 Identities=10% Similarity=0.029 Sum_probs=16.5
Q ss_pred ccEEEECCC--CchHHHHHHHH
Q 018941 10 NPIVEMDGD--EMTRVFWKSIK 29 (348)
Q Consensus 10 ~~I~vi~GD--GIGpEv~~~~~ 29 (348)
++|++-.|| ||||||+-.+.
T Consensus 7 ~~iaIT~GDpaGIGpEii~ka~ 28 (330)
T 2hi1_A 7 KTVAITMGDPAGIGPEIIVKAL 28 (330)
T ss_dssp CCEEEECCCTTTTHHHHHHHHH
T ss_pred CCEEEcCCCCcchhHHHHHHHH
Confidence 349999999 99999887554
No 40
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=29.63 E-value=32 Score=32.90 Aligned_cols=20 Identities=10% Similarity=-0.039 Sum_probs=16.7
Q ss_pred ccEEEECCC--CchHHHHHHHH
Q 018941 10 NPIVEMDGD--EMTRVFWKSIK 29 (348)
Q Consensus 10 ~~I~vi~GD--GIGpEv~~~~~ 29 (348)
-+|++-.|| ||||||+-.+.
T Consensus 9 ~kIaIT~GDPaGIGpEIilKa~ 30 (349)
T 4aty_A 9 MTVALAIGDPNGIGPEIAVKAA 30 (349)
T ss_dssp CCEEEECCCTTSSHHHHHHHHH
T ss_pred CeEEEECCCcchhHHHHHHHHH
Confidence 379999997 99999876654
No 41
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=29.02 E-value=38 Score=26.41 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEeC
Q 018941 188 DESIRAFAEASMNTAYQKKWPLYLSTK 214 (348)
Q Consensus 188 r~~~eRiar~AFe~A~~r~k~Vt~v~K 214 (348)
...+++.+++|.++|++.+.+|+++|=
T Consensus 15 s~~s~~al~~A~~la~~~~a~l~ll~v 41 (146)
T 3s3t_A 15 SDAAQAAFTEAVNIAQRHQANLTALYV 41 (146)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 456899999999999988877777653
No 42
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=27.64 E-value=42 Score=26.11 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEeC
Q 018941 188 DESIRAFAEASMNTAYQKKWPLYLSTK 214 (348)
Q Consensus 188 r~~~eRiar~AFe~A~~r~k~Vt~v~K 214 (348)
.+.+++.+++|.++|++.+.+|+++|=
T Consensus 12 s~~s~~al~~A~~la~~~~a~l~ll~v 38 (147)
T 3hgm_A 12 SKGAVKALEKGVGLQQLTGAELYILCV 38 (147)
T ss_dssp BHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 456889999999999988888888763
No 43
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=27.18 E-value=51 Score=26.16 Aligned_cols=26 Identities=15% Similarity=0.060 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEe
Q 018941 188 DESIRAFAEASMNTAYQKKWPLYLST 213 (348)
Q Consensus 188 r~~~eRiar~AFe~A~~r~k~Vt~v~ 213 (348)
...+++.+++|.++|+..+.+|+++|
T Consensus 27 s~~s~~al~~a~~la~~~~a~l~ll~ 52 (156)
T 3fg9_A 27 NTSSERAFRYATTLAHDYDVPLGICS 52 (156)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 46789999999999999888888776
No 44
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=25.70 E-value=56 Score=26.38 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEe
Q 018941 188 DESIRAFAEASMNTAYQKKWPLYLST 213 (348)
Q Consensus 188 r~~~eRiar~AFe~A~~r~k~Vt~v~ 213 (348)
...+++.+++|.++|+..+.+|+++|
T Consensus 35 s~~s~~al~~A~~la~~~~a~l~llh 60 (155)
T 3dlo_A 35 SDRAERVLRFAAEEARLRGVPVYVVH 60 (155)
T ss_dssp SHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 46789999999999999888888876
No 45
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=24.71 E-value=34 Score=32.83 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=15.6
Q ss_pred ccEEEECCC--CchHHHHHHH
Q 018941 10 NPIVEMDGD--EMTRVFWKSI 28 (348)
Q Consensus 10 ~~I~vi~GD--GIGpEv~~~~ 28 (348)
.+|++-.|| |||||++-.+
T Consensus 9 ~~iaiT~GDpaGIGpEiilka 29 (334)
T 3lxy_A 9 NRLVITPGEPAGVGPDLAITL 29 (334)
T ss_dssp SEEEEECCCTTSSHHHHHHHH
T ss_pred CEEEEeCCCCccchHHHHHHh
Confidence 579999998 8999987543
No 46
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=24.54 E-value=52 Score=25.48 Aligned_cols=26 Identities=23% Similarity=0.112 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEe
Q 018941 188 DESIRAFAEASMNTAYQKKWPLYLST 213 (348)
Q Consensus 188 r~~~eRiar~AFe~A~~r~k~Vt~v~ 213 (348)
...+++.+++|.++|+..+.+|+++|
T Consensus 12 s~~s~~al~~a~~la~~~~a~l~ll~ 37 (137)
T 2z08_A 12 SEHARRAAEVAKAEAEAHGARLIVVH 37 (137)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 34578899999999998887888776
No 47
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=22.50 E-value=1.1e+02 Score=27.11 Aligned_cols=62 Identities=13% Similarity=0.008 Sum_probs=37.4
Q ss_pred ccccccccEEEECCC--------CchHHHHHHHHHHHhcCCCceEEEEEecchhhHhccCCCCcHHHHHHHHhcCeeeec
Q 018941 4 QKIKVANPIVEMDGD--------EMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKC 75 (348)
Q Consensus 4 ~~~~m~~~I~vi~GD--------GIGpEv~~~~~~~~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~l~~~~~~da~lkg 75 (348)
++.+| .+|.+|-|- +.-..+.+++.+.+.+.+.+++..+.+ . +.. .++..+.++.+|+++++
T Consensus 21 ~~~~M-~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~--~------~~D-v~~~~~~l~~aD~iv~~ 90 (218)
T 3rpe_A 21 QSNAM-SNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVD--Q------GYD-IESEIENYLWADTIIYQ 90 (218)
T ss_dssp ---CC-CCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGG--G------CCC-HHHHHHHHHHCSEEEEE
T ss_pred ccccC-cceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECC--C------ccC-HHHHHHHHHhCCEEEEE
Confidence 44467 578877654 244556666665555567777665543 2 111 35668999999999876
No 48
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=22.09 E-value=54 Score=25.69 Aligned_cols=25 Identities=20% Similarity=-0.037 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEe
Q 018941 189 ESIRAFAEASMNTAYQKKWPLYLST 213 (348)
Q Consensus 189 ~~~eRiar~AFe~A~~r~k~Vt~v~ 213 (348)
..+++.+++|+++|+..+.+|+++|
T Consensus 17 ~~s~~al~~a~~la~~~~a~l~ll~ 41 (150)
T 3tnj_A 17 SEDSQVVQKVRNLASQIGARLSLIH 41 (150)
T ss_dssp TTHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 4488999999999999887877766
No 49
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=21.43 E-value=1.3e+02 Score=24.94 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=32.3
Q ss_pred eeeeChHHHHHHHHHHHHHHHhCCCC--EEEEe-CCCccc--ccchhH
Q 018941 183 SMYNTDESIRAFAEASMNTAYQKKWP--LYLST-KNTILK--KYDGRF 225 (348)
Q Consensus 183 ~~~~Tr~~~eRiar~AFe~A~~r~k~--Vt~v~-KaNVl~--~~~g~f 225 (348)
...+|.+.+.+++..|.+.|++++.+ |.+++ -.|++- ..||-+
T Consensus 9 ~~~lt~~~A~~l~~aa~~~A~~~g~~v~IaVvD~~G~ll~~~rmdga~ 56 (145)
T 2a2l_A 9 VQTITLAAAQQMAAAVEKKATEINVAVVFSVVDRGGNTLLIQRMDEAF 56 (145)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHTTCCCEEEEEETTSCEEEEEECTTSC
T ss_pred ecCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEECCCCEEEEEECCCCC
Confidence 34589999999999999999999866 66777 456542 235554
No 50
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=21.30 E-value=58 Score=25.08 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHH-HhCCCCEEEEeC
Q 018941 188 DESIRAFAEASMNTA-YQKKWPLYLSTK 214 (348)
Q Consensus 188 r~~~eRiar~AFe~A-~~r~k~Vt~v~K 214 (348)
.+.+++.+++|.++| ++.+.+|+++|=
T Consensus 11 s~~s~~al~~a~~la~~~~~a~l~ll~v 38 (138)
T 3idf_A 11 TEACERAAQYILDMFGKDADCTLTLIHV 38 (138)
T ss_dssp SHHHHHHHHHHHHHHTTCTTEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhccCCCCEEEEEEE
Confidence 355889999999999 777778887763
Done!