Query 018942
Match_columns 348
No_of_seqs 190 out of 827
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:22:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01438 tankyrase_like Tankyra 100.0 6.8E-38 1.5E-42 288.3 19.0 179 72-264 16-221 (223)
2 PF00644 PARP: Poly(ADP-ribose 100.0 1.2E-35 2.5E-40 271.6 14.5 173 72-263 3-206 (206)
3 cd01439 TCCD_inducible_PARP_li 100.0 2E-35 4.4E-40 250.0 10.0 114 143-261 1-121 (121)
4 PF12174 RST: RCD1-SRO-TAF4 (R 100.0 2.3E-30 5.1E-35 198.3 8.4 69 278-346 2-70 (70)
5 cd01437 parp_like Poly(ADP-rib 100.0 2.3E-29 5E-34 246.9 14.8 173 72-262 138-347 (347)
6 PLN03124 poly [ADP-ribose] pol 99.9 5.9E-23 1.3E-27 213.7 15.3 174 72-264 428-639 (643)
7 PLN03123 poly [ADP-ribose] pol 99.9 2.2E-22 4.8E-27 218.2 13.8 175 72-264 767-978 (981)
8 PLN03122 Poly [ADP-ribose] pol 99.8 3.7E-21 8.1E-26 205.0 12.3 174 72-264 591-805 (815)
9 cd01341 ADP_ribosyl ADP_ribosy 99.8 7.2E-19 1.6E-23 151.8 6.4 111 143-257 1-137 (137)
10 KOG1037 NAD+ ADP-ribosyltransf 98.6 1.6E-08 3.5E-13 104.9 2.3 128 72-213 309-440 (531)
11 KOG0034 Ca2+/calmodulin-depend 89.7 0.74 1.6E-05 42.0 5.7 48 285-332 84-135 (187)
12 PF12767 SAGA-Tad1: Transcript 88.4 1.7 3.7E-05 41.2 7.4 63 281-343 5-74 (252)
13 PF12509 DUF3715: Protein of u 84.5 3.4 7.3E-05 37.0 6.7 115 116-234 2-125 (165)
14 PF13833 EF-hand_8: EF-hand do 77.9 3.4 7.3E-05 29.0 3.6 45 285-329 5-53 (54)
15 PF02671 PAH: Paired amphipath 73.0 9 0.0002 26.5 4.6 33 301-333 2-34 (47)
16 PHA01748 hypothetical protein 71.7 10 0.00022 28.1 4.9 51 295-348 6-57 (60)
17 PF15633 Tox-ART-HYD1: HYD1 si 70.6 2.7 5.9E-05 34.4 1.7 40 144-183 1-40 (96)
18 PF13151 DUF3990: Protein of u 63.9 3.3 7.1E-05 36.6 1.0 26 304-329 108-133 (154)
19 KOG4177 Ankyrin [Cell wall/mem 60.0 2 4.4E-05 48.9 -1.2 92 116-212 1007-1112(1143)
20 PF08349 DUF1722: Protein of u 57.0 28 0.0006 29.0 5.4 47 286-332 54-100 (117)
21 PRK00819 RNA 2'-phosphotransfe 55.9 13 0.00028 33.7 3.4 35 140-182 93-127 (179)
22 PF09851 SHOCT: Short C-termin 54.5 31 0.00068 22.0 4.1 29 304-332 3-31 (31)
23 PF13405 EF-hand_6: EF-hand do 52.5 13 0.00028 23.2 2.1 28 302-329 1-28 (31)
24 PF01885 PTS_2-RNA: RNA 2'-pho 51.8 11 0.00024 34.3 2.3 35 140-182 104-138 (186)
25 PTZ00184 calmodulin; Provision 50.0 40 0.00088 27.6 5.4 63 281-343 60-129 (149)
26 smart00027 EH Eps15 homology d 48.7 35 0.00076 26.9 4.6 49 282-330 24-73 (96)
27 cd05031 S-100A10_like S-100A10 48.3 50 0.0011 26.0 5.4 31 303-333 7-42 (94)
28 PF09454 Vps23_core: Vps23 cor 47.5 73 0.0016 24.0 5.8 38 303-340 25-62 (65)
29 smart00862 Trans_reg_C Transcr 46.4 33 0.00071 25.3 3.9 49 298-347 6-58 (78)
30 PF00036 EF-hand_1: EF hand; 43.5 15 0.00033 23.0 1.3 27 303-329 2-28 (29)
31 cd00213 S-100 S-100: S-100 dom 43.1 84 0.0018 24.1 5.9 42 302-343 6-60 (88)
32 cd00383 trans_reg_C Effector d 43.0 28 0.00062 26.8 3.2 49 298-347 24-75 (95)
33 COG1859 KptA RNA:NAD 2'-phosph 42.9 19 0.00041 33.6 2.4 26 138-163 117-142 (211)
34 smart00027 EH Eps15 homology d 42.0 70 0.0015 25.2 5.4 44 298-342 4-52 (96)
35 cd00051 EFh EF-hand, calcium b 41.8 52 0.0011 21.9 4.1 44 284-327 16-62 (63)
36 cd01436 Dipth_tox_like Mono-AD 38.0 33 0.00072 29.4 2.9 50 144-197 2-54 (147)
37 cd05030 calgranulins Calgranul 37.6 1.1E+02 0.0023 23.9 5.8 33 302-334 6-43 (88)
38 PTZ00183 centrin; Provisional 37.5 77 0.0017 26.4 5.3 59 285-343 70-135 (158)
39 cd05025 S-100A1 S-100A1: S-100 36.0 72 0.0016 24.9 4.5 31 303-333 11-43 (92)
40 COG5126 FRQ1 Ca2+-binding prot 34.5 96 0.0021 27.7 5.5 60 281-341 68-131 (160)
41 cd00052 EH Eps15 homology doma 33.4 1.1E+02 0.0023 21.6 4.8 47 285-331 16-63 (67)
42 KOG0546 HSP90 co-chaperone CPR 32.5 45 0.00098 33.6 3.3 58 1-61 113-181 (372)
43 smart00054 EFh EF-hand, calciu 32.3 33 0.00071 19.0 1.5 25 305-329 4-28 (29)
44 PF00486 Trans_reg_C: Transcri 32.3 53 0.0011 24.2 3.1 49 298-347 6-57 (77)
45 COG3710 CadC DNA-binding winge 28.5 51 0.0011 28.8 2.7 48 297-345 31-80 (148)
46 PRK02998 prsA peptidylprolyl i 27.8 74 0.0016 30.6 3.9 31 311-341 29-59 (283)
47 PF13720 Acetyltransf_11: Udp 27.7 2.8E+02 0.0062 21.6 6.6 51 293-343 23-74 (83)
48 cd05029 S-100A6 S-100A6: S-100 27.5 1.1E+02 0.0025 24.0 4.3 48 284-331 28-81 (88)
49 PRK10766 DNA-binding transcrip 26.5 71 0.0015 27.9 3.3 49 298-347 160-211 (221)
50 PRK10701 DNA-binding transcrip 26.0 75 0.0016 28.3 3.5 48 299-347 163-213 (240)
51 cd05030 calgranulins Calgranul 25.8 98 0.0021 24.2 3.7 48 283-330 25-80 (88)
52 PTZ00184 calmodulin; Provision 25.8 1.8E+02 0.0038 23.7 5.5 50 281-330 24-76 (149)
53 cd05023 S-100A11 S-100A11: S-1 25.5 93 0.002 24.6 3.5 48 284-331 27-82 (89)
54 PTZ00183 centrin; Provisional 24.9 86 0.0019 26.1 3.4 46 284-329 106-154 (158)
55 cd05022 S-100A13 S-100A13: S-1 24.0 1.3E+02 0.0028 23.9 4.1 49 284-332 25-78 (89)
56 PRK03095 prsA peptidylprolyl i 23.7 95 0.0021 29.8 3.9 31 311-341 28-58 (287)
57 cd08533 SAM_PNT-ETS-1,2 Steril 22.8 53 0.0011 25.3 1.5 28 316-344 41-68 (71)
58 PTZ00315 2'-phosphotransferase 22.6 58 0.0013 34.9 2.3 33 142-182 477-510 (582)
59 cd00171 Sec7 Sec7 domain; Doma 22.1 1E+02 0.0022 27.8 3.5 32 315-346 147-183 (185)
60 PRK09468 ompR osmolarity respo 21.5 97 0.0021 27.5 3.3 49 298-347 162-213 (239)
61 PRK09108 type III secretion sy 21.2 2E+02 0.0042 28.9 5.6 56 291-346 190-245 (353)
62 cd05031 S-100A10_like S-100A10 20.5 1.9E+02 0.0041 22.6 4.4 47 284-330 26-80 (94)
63 PRK12557 H(2)-dependent methyl 20.5 1.1E+02 0.0024 30.4 3.6 57 290-347 273-339 (342)
64 PRK10167 hypothetical protein; 20.2 2.4E+02 0.0053 25.3 5.5 46 287-332 96-141 (169)
No 1
>cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT). Tankyrase 1 poly-ADP-ribosylates Telomere Repeat Binding Factor 1 (TRF1) while Tankyrase 2 can poly-ADP-ribosylate itself or TRF1. The tankyrases also contain multiple ankyrin repeats that mediate protein-protein interaction (binding TRF1 and insulin-responsive aminopeptidase) and may function as a complex. Overexpression of Tank1 promotes increased telomere length when overexpressed, while overexpressed Tank2 has been shown to promote PARP cleavage- independent cell death (necrosis).
Probab=100.00 E-value=6.8e-38 Score=288.29 Aligned_cols=179 Identities=21% Similarity=0.317 Sum_probs=147.5
Q ss_pred CceEECCCCChHHHHHHHHHhcccCCC---------CCCCcEEEEEEeccCCcccHHHHHHHHHHHHHHHHHcCCCCcee
Q 018942 72 NGLISLQEGDKVYDLISGRLISGLGVL---------GAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANVK 142 (348)
Q Consensus 72 ~~lv~L~~~s~ey~~V~~~F~~~~~~~---------~~~~~I~~I~Rv~~~~~~n~~r~~~f~~~~~~l~~k~~g~~N~r 142 (348)
..+++|.+++.||+.|++.|.+|++++ .+.++|++|+|| ||+.+|++|+.++++|.++++...||+
T Consensus 16 ~~~~~l~p~~~e~~~v~~~~~~t~~~~~~~~~~~~~~~~~~I~kI~RI-----QN~~Lw~~y~~kk~~~~~~~~~~~ne~ 90 (223)
T cd01438 16 TILLDLAPDDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNIIRIQKV-----VNKKLRERYCHRQKEIAEENHNHHNER 90 (223)
T ss_pred ceEEEecCCCchHHHHHHHHHhhccccccCcccccccccccEEEEEec-----CCHHHHHHHHHHHHHHHHhhCCCcceE
Confidence 569999999999999999999998753 235799999999 899999999999999998888889999
Q ss_pred EeeeccChhhHHHHHhhcCCCCCCCCCCCcccceeeeCCCCCCcccCcccccC---------CCC-----cEEEEEEEee
Q 018942 143 YAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPDDSPLECVKNSAID---------REG-----MRYLLLCRVI 208 (348)
Q Consensus 143 ~lfHGTs~~~i~~Il~~GF~~~~~~~~~~~fG~GIYFA~~~~~s~S~~Y~~~d---------~~G-----~r~mlLCrVl 208 (348)
+|||||+. +..|+.+|||++.+ ..+++||+|||||.++++ |++||... .++ .+.||||||+
T Consensus 91 ~LfHGt~~--~~~I~~~GFd~r~~-~~g~~fGkGiYFA~~ask--S~~Y~~~~~~~~~~p~~~~~~~~~~~~~MfLcrVl 165 (223)
T cd01438 91 MLFHGSPF--INAIIHKGFDERHA-YIGGMFGAGIYFAENSSK--SNQYVYGIGGGTGCPTHKDRSCYVCHRQMLFCRVT 165 (223)
T ss_pred EEeecCcc--hhHHHHhCCCcccc-ccCceeeeeeeeccchhh--hccccccccccccCcccccccccccceeEEEEEEE
Confidence 99999974 66999999998875 368999999999999954 57887531 111 4789999999
Q ss_pred cCcceeeCCCCCCCCCCCCCCcceecCCCC----CcEEEEEcCCCccccccccEEEEEcC
Q 018942 209 LGKQEVVHPGSDQYHPSTGEFESGVDNLQV----PKKYILWSTNMNTHILPEYIISLKAP 264 (348)
Q Consensus 209 lG~~~~v~pgs~q~~ps~~~yDSvVd~~~n----p~~yVV~~~~mN~qiyPeYlItyk~~ 264 (348)
+|++....+.... .+.+.+|||+++.... .+|||||+. +||||+|||+|+..
T Consensus 166 LGk~~~~~~~~~~-~~~P~G~dSv~g~Ps~~~~~~~EfVVyd~---~Q~YPeYLI~y~~~ 221 (223)
T cd01438 166 LGKSFLQFSAMKM-AHAPPGHHSVIGRPSVNGLAYAEYVIYRG---EQAYPEYLITYQIV 221 (223)
T ss_pred ecceeeccCCccc-CCCCCCCcceEcCCCCCCcccCEEEEECC---CcEeeEEEEEEEee
Confidence 9998654433222 2335689999986432 479999997 99999999999864
No 2
>PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself. PARP, also known as poly(ADP-ribose) synthetase and poly(ADP-ribose) transferase, transfers the ADP-ribose moiety from its substrate, nicotinamide adenine dinucleotide (NAD), to carboxylate groups of aspartic and glutamic residues. Whereas some PARPs might function in genome protection, others appear to play different roles in the cell, including telomere replication and cellular transport. PARP-1 is a multifunctional enzyme. The polypeptide has a highly conserved modular organisation consisting of an N-terminal DNA-binding domain, a central regulating segment, and a C-terminal or F region accommodating the catalytic centre. The F region is composed of two parts: a purely alpha-helical N- terminal domain (alpha-hd), and the mixed alpha/beta C-terminal catalytic domain bearing the putative NAD binding site. Although proteins of the PARP family are related through their PARP catalytic domain, they do not resemble each other outside of that region, but rather, they contain unique domains that distinguish them from each other and hint at their discrete functions. Domains with which the PARP catalytic domain is found associated include zinc fingers, SAP, ankyrin, BRCT, Macro, SAM, WWE and UIM domains [, , ]. The alpha-hd domain is about 130 amino acids in length and consists of an up-up-down-up-down-down motif of helices. It is thought to relay the activation signal issued on binding to damaged DNA [, ]. The PARP catalytic domain is about 230 residues in length. Its core consists of a five-stranded antiparallel beta-sheet and four-stranded mixed beta-sheet. The two sheets are consecutive and are connected via a single pair of hydrogen bonds between two strands that run at an angle of 90 degrees. These central beta-sheets are surrounded by five alpha-helices, three 3(10)-helices, and by a three- and a two-stranded beta-sheet in a 37-residue excursion between two central beta-strands [, ]. The active site, known as the 'PARP signature' is formed by a block of 50 amino acids that is strictly conserved among the vertebrates and highly conserved among all species. The 'PARP signature' is characteristic of all PARP protein family members. It is formed by a segment of conserved amino acid residues formed by a beta-sheet, an alpha-helix, a 3(10)-helix, a beta-sheet, and an alpha-helix [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity; PDB: 2PQF_F 4F0D_A 1PAX_A 1EFY_A 1A26_A 2PAW_A 4PAX_A 3PAX_A 2PAX_A 3P0N_A ....
Probab=100.00 E-value=1.2e-35 Score=271.61 Aligned_cols=173 Identities=25% Similarity=0.459 Sum_probs=144.6
Q ss_pred CceEECCCCChHHHHHHHHHhcccCCCCC-CCcEEEEEEeccCCcccHHHHHHHHHHHHHHHHHcCCCCceeEeeeccCh
Q 018942 72 NGLISLQEGDKVYDLISGRLISGLGVLGA-QAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANVKYAWYAGTK 150 (348)
Q Consensus 72 ~~lv~L~~~s~ey~~V~~~F~~~~~~~~~-~~~I~~I~Rv~~~~~~n~~r~~~f~~~~~~l~~k~~g~~N~r~lfHGTs~ 150 (348)
..|+.|++++.||+.|+++|.++|.+... ...|.+|+|| +|+.+|++|+..++ ..|+++|||||+.
T Consensus 3 ~~l~~l~~~s~ey~~I~~~f~~~~~~~~~~~~~I~~I~~i-----~~~~~~~~f~~~~~--------~~n~~~L~HGt~~ 69 (206)
T PF00644_consen 3 CELVPLEPDSEEYKEIEKYFKKTWKPVHKYKPKIKKIFRI-----QNPSLWERFEEKKK--------EGNERLLFHGTSA 69 (206)
T ss_dssp EEEEEEETTSHHHHHHHHHHHHTSTSTTTEEEEEEEEEEE-----EEHHHHHHHHHHHH--------SSSEEEEEEEETG
T ss_pred CEEEEcCCCCHHHHHHHHHHHhHCCCCCCCCCEEEEEEEE-----cChhHHHHHHHHHh--------cCCceEEeCCCCh
Confidence 45899999999999999999999987554 6899999999 89999999987664 4689999999999
Q ss_pred hhHHHHHhhcC--CCCCCCCCCCcccceeeeCCCCCCcccCccccc-CCCCcEEEEEEEeecCcceeeCCCCCCCCCCCC
Q 018942 151 DEICKIIEHGF--GYCGKPSNNGMYGCGVYLSPDDSPLECVKNSAI-DREGMRYLLLCRVILGKQEVVHPGSDQYHPSTG 227 (348)
Q Consensus 151 ~~i~~Il~~GF--~~~~~~~~~~~fG~GIYFA~~~~~s~S~~Y~~~-d~~G~r~mlLCrVllG~~~~v~pgs~q~~ps~~ 227 (348)
+++.+|+.+|| +.+.++.+|++||.|||||+++ ++|+.||.. +.+|.++||||+|++|++..+..... ...++.
T Consensus 70 ~~~~~I~~~G~~~~~~~~~~~g~~fG~GiYfs~~~--s~s~~Y~~~~~~~g~~~~llc~V~lG~~~~~~~~~~-~~~~~~ 146 (206)
T PF00644_consen 70 ENICSILRNGFKIDPRKASRNGGMFGKGIYFSDNS--SKSAQYSKPSDSNGERFMLLCRVALGKPYELKNDNP-MTSPPP 146 (206)
T ss_dssp GGHHHHHHHSS---TTTSCGGCSTTSSSEEEBSSH--HHHHTTSTSESSSSEEEEEEEEEEECSEEEESSCCT-GSSGCT
T ss_pred hhccchhcCCCccCccccccCCceeeeEEEeCcch--hhhcccCCCccCCcceeeeEEEEEeccceeeccCcc-cccccC
Confidence 99999999999 6666666889999999999887 677899987 78899999999999999766543322 233456
Q ss_pred CCcceec---------------------------CCCCCcEEEEEcCCCccccccccEEEEEc
Q 018942 228 EFESGVD---------------------------NLQVPKKYILWSTNMNTHILPEYIISLKA 263 (348)
Q Consensus 228 ~yDSvVd---------------------------~~~np~~yVV~~~~mN~qiyPeYlItyk~ 263 (348)
+|||+.+ ...++++||||+. .|+||+|||+|+.
T Consensus 147 g~~sv~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~eyVVy~~---~q~~p~YLi~y~~ 206 (206)
T PF00644_consen 147 GYDSVKGVGSKTPEDTIDEDGVPSGKGYVSEYDGSSLNPNEYVVYDN---SQVYPEYLITYKF 206 (206)
T ss_dssp TESEEEECESEEEGGEEEETTETTSSEEESCEESSSSSCSEEEESSG---GGEEEEEEEEEEE
T ss_pred CcceecCCCccCCccccccCCCCCCCCccCccCCCccCCCEEEEEcc---cceeeEEEEEEEC
Confidence 6777543 1256799999997 9999999999984
No 3
>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) causes pleotropic effects in mammalian species through modulating gene expression. TCCD indicible PARP (TiPARP) is a target of TCDD that may contribute to multiple responses to TCDD by modulating protein function through poly ADP-ribosylation
Probab=100.00 E-value=2e-35 Score=249.99 Aligned_cols=114 Identities=25% Similarity=0.444 Sum_probs=100.7
Q ss_pred EeeeccChhhHHHHHhhcCCCCCCCCCCCcccceeeeCCCCCCcccCcccccCC--CCcEEEEEEEeecCcceeeC----
Q 018942 143 YAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPDDSPLECVKNSAIDR--EGMRYLLLCRVILGKQEVVH---- 216 (348)
Q Consensus 143 ~lfHGTs~~~i~~Il~~GF~~~~~~~~~~~fG~GIYFA~~~~~s~S~~Y~~~d~--~G~r~mlLCrVllG~~~~v~---- 216 (348)
+|||||+.+++..|+++||+++.++.++++||+|||||++++ .|++||..+. +|.++|||||||+|+++...
T Consensus 1 ~LfHGt~~~~~~~I~~~GF~~~~~g~~~~~~G~GiYFA~~~s--~S~~Y~~~~~~~~g~~~mfL~rVl~G~~~~~~~~~~ 78 (121)
T cd01439 1 LLFHGTSADAVEAICRHGFDRRFCGKHGTMYGKGSYFAKNAS--YSHQYSKKSPKADGLKEMFLARVLTGDYTQGHPGYR 78 (121)
T ss_pred CcccccChhhHHHHHHccCCCccCCCCCCccCCeeecccChh--hhhcccccCcCCCCcEEEEEEEEEecceecCCCccc
Confidence 589999999999999999999998878999999999999885 5578886655 49999999999999986543
Q ss_pred -CCCCCCCCCCCCCcceecCCCCCcEEEEEcCCCccccccccEEEE
Q 018942 217 -PGSDQYHPSTGEFESGVDNLQVPKKYILWSTNMNTHILPEYIISL 261 (348)
Q Consensus 217 -pgs~q~~ps~~~yDSvVd~~~np~~yVV~~~~mN~qiyPeYlIty 261 (348)
||.++..+++++|||+||+..+|++||||++ .||||||||+|
T Consensus 79 ~pP~~~~~~~~~~yDS~vd~~~~p~~~Vvf~~---~q~yPeYlI~y 121 (121)
T cd01439 79 RPPLKPSGVELDRYDSCVDNVSNPSIFVIFSD---VQAYPEYLITY 121 (121)
T ss_pred CCCCccCCCCCCCccceeCCCCCCCEEEEEeC---CccceeEEEEC
Confidence 4446666778999999999999999999997 99999999997
No 4
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=99.96 E-value=2.3e-30 Score=198.30 Aligned_cols=69 Identities=58% Similarity=0.986 Sum_probs=67.6
Q ss_pred cCCCCCCcchHHHHHHHHcCCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 018942 278 RVPTSPWMPFPILISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAK 346 (348)
Q Consensus 278 ~~p~sp~~~f~~L~~~l~~~l~~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~ivGd~~L~~~i~~~~~k 346 (348)
++|+|||||||+||++|+++|||++|++|+++|++||++||||+||||+||.||||+||++||+++|+|
T Consensus 2 ~~P~sp~~~F~~L~~~l~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD~lL~s~I~~lq~k 70 (70)
T PF12174_consen 2 RRPTSPWMPFPMLFSALSKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGDQLLRSAIKSLQQK 70 (70)
T ss_pred CCCCCCcccHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 579999999999999999999999999999999999999999999999999999999999999999986
No 5
>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Poly(ADP-ribose)-like polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length through interactions with telomere repeat binding factor 1.
Probab=99.96 E-value=2.3e-29 Score=246.88 Aligned_cols=173 Identities=18% Similarity=0.268 Sum_probs=140.2
Q ss_pred CceEECCCCChHHHHHHHHHhcccCCC-CCCCcEEEEEEeccCCcccHHHHHHHHHHHHHHHHHcCCCCceeEeeeccCh
Q 018942 72 NGLISLQEGDKVYDLISGRLISGLGVL-GAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANVKYAWYAGTK 150 (348)
Q Consensus 72 ~~lv~L~~~s~ey~~V~~~F~~~~~~~-~~~~~I~~I~Rv~~~~~~n~~r~~~f~~~~~~l~~k~~g~~N~r~lfHGTs~ 150 (348)
..+.+|++++.||+.|+++|.+|+++. ....+|..|+|| ++...|++|+.++ ...|+++|||||+.
T Consensus 138 ~~i~~L~~~s~ey~~I~~y~~~t~~~~~~~~~~V~~If~i-----~r~~e~~~F~~~~--------~~~n~~lLwHGsr~ 204 (347)
T cd01437 138 CKIEPLDKDSEEYKIIEKYLKNTHAPTTEYTVEVQEIFRV-----EREGETDRFKPFK--------KLGNRKLLWHGSRL 204 (347)
T ss_pred eeEEECCCCChHHHHHHHHHHhcCCCCCCcceeEEEEEEe-----cCCCchhhhHHhh--------ccCCeEEEEcCCCh
Confidence 569999999999999999999998753 345899999999 6777888887422 34799999999999
Q ss_pred hhHHHHHhhcCCCCC--CCCCCCcccceeeeCCCCCCcccCcccccCC-CCcEEEEEEEeecCcceeeCCCCCCCCCCCC
Q 018942 151 DEICKIIEHGFGYCG--KPSNNGMYGCGVYLSPDDSPLECVKNSAIDR-EGMRYLLLCRVILGKQEVVHPGSDQYHPSTG 227 (348)
Q Consensus 151 ~~i~~Il~~GF~~~~--~~~~~~~fG~GIYFA~~~~~s~S~~Y~~~d~-~G~r~mlLCrVllG~~~~v~pgs~q~~ps~~ 227 (348)
.++.+|+++||+++. ++.+|.|||+|||||+.+ ++|++||.++. +|.++||||+|++|++.............+.
T Consensus 205 ~n~~~Il~~Gl~~~~~~~~~~g~mfGkGIYFAd~~--skS~~Y~~~~~~~~~~~mlLc~V~lG~~~~~~~~~~~~~~~p~ 282 (347)
T cd01437 205 TNFVGILSQGLRIAPPEAPVTGYMFGKGIYFADMF--SKSANYCHASASDPTGLLLLCEVALGKMNELKKADYMAKELPK 282 (347)
T ss_pred hhHHHHHhcCCCcCccccccCCccccceEeecCch--HhhhhhcccCCCCCceEEEEEEEecCceehhccCChhhccCCC
Confidence 999999999999976 456789999999999888 67789998776 7899999999999998665432222222367
Q ss_pred CCcceecCC---------------------------------CCCcEEEEEcCCCccccccccEEEEE
Q 018942 228 EFESGVDNL---------------------------------QVPKKYILWSTNMNTHILPEYIISLK 262 (348)
Q Consensus 228 ~yDSvVd~~---------------------------------~np~~yVV~~~~mN~qiyPeYlItyk 262 (348)
+|||+.+-- -..+|||||+. .||.+.|||.++
T Consensus 283 g~~Sv~g~G~~~p~~~~~~~~~~gv~vP~G~~~~~~~~~~~~l~~nEyiVYd~---~Qir~rYLv~vk 347 (347)
T cd01437 283 GKHSVKGLGKTAPDPSEFEIDLDGVVVPLGKPVPSGHKTDTSLLYNEYIVYDV---AQVRLKYLLEVK 347 (347)
T ss_pred CceeeEeccCCCCCchhheeccCCeEeeCCccccCCcCCCcccccCCeEeech---hHEEEEEEEEeC
Confidence 899875320 12379999998 999999999875
No 6
>PLN03124 poly [ADP-ribose] polymerase; Provisional
Probab=99.89 E-value=5.9e-23 Score=213.67 Aligned_cols=174 Identities=21% Similarity=0.278 Sum_probs=131.4
Q ss_pred CceEECCCCChHHHHHHHHHhcccCCCCC--CCcEEEEEEeccCCcccHHHHHHHHHHHHHHHHHcCCCCceeEeeeccC
Q 018942 72 NGLISLQEGDKVYDLISGRLISGLGVLGA--QAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANVKYAWYAGT 149 (348)
Q Consensus 72 ~~lv~L~~~s~ey~~V~~~F~~~~~~~~~--~~~I~~I~Rv~~~~~~n~~r~~~f~~~~~~l~~k~~g~~N~r~lfHGTs 149 (348)
..|.+|+++|.||+.|++++..+-++.+. ..+|..|+||. .....++|+.+. ...|.++|||||+
T Consensus 428 c~i~pLd~~S~efk~I~~Yl~nT~~~th~~y~l~V~~If~V~-----R~~E~~rF~~~~--------~~~Nr~LLWHGSr 494 (643)
T PLN03124 428 CELEPLDTDSEEFSMIAKYLENTHGQTHSGYTLEIVQIFKVS-----REGEDERFQKFS--------STKNRMLLWHGSR 494 (643)
T ss_pred CeeEEcCCCCHHHHHHHHHHHhcCCCccCcCceeEEEEEEec-----cccchhhHHHhh--------ccCCeEEEEcCCC
Confidence 66999999999999999999998765443 47899999995 333344564322 2369999999999
Q ss_pred hhhHHHHHhhcCCCC--CCCCCCCcccceeeeCCCCCCcccCcccccCC-CCcEEEEEEEeecCcceeeC-CCCCCCCCC
Q 018942 150 KDEICKIIEHGFGYC--GKPSNNGMYGCGVYLSPDDSPLECVKNSAIDR-EGMRYLLLCRVILGKQEVVH-PGSDQYHPS 225 (348)
Q Consensus 150 ~~~i~~Il~~GF~~~--~~~~~~~~fG~GIYFA~~~~~s~S~~Y~~~d~-~G~r~mlLCrVllG~~~~v~-pgs~q~~ps 225 (348)
..++.+|+++||.+. .++.+|.|||.|||||+.. ++|++||.+.. ++.+.||||+|+||++.... +...... .
T Consensus 495 ~~N~~gILs~GLriaPpea~~~GymfGkGIYFAd~~--skSa~Yc~~~~~~~~g~llLceVaLG~~~el~~~~y~a~~-~ 571 (643)
T PLN03124 495 LTNWTGILSQGLRIAPPEAPSTGYMFGKGVYFADMF--SKSANYCYASAANPDGVLLLCEVALGDMNELLQADYNANK-L 571 (643)
T ss_pred cccHHHHHhccCccCCcccccccccccceeEecchh--hhhhhhhhccCCCCeeEEEEEEEecCCcchhccCcccccc-C
Confidence 999999999999964 3456899999999999877 78899998654 45789999999999974432 1111011 1
Q ss_pred CCCCcceec----------------C----------------CCCCcEEEEEcCCCccccccccEEEEEcC
Q 018942 226 TGEFESGVD----------------N----------------LQVPKKYILWSTNMNTHILPEYIISLKAP 264 (348)
Q Consensus 226 ~~~yDSvVd----------------~----------------~~np~~yVV~~~~mN~qiyPeYlItyk~~ 264 (348)
+.+|||+.+ + .-..+|||||+. .||...|||..+..
T Consensus 572 p~G~~S~kG~G~~~Pdp~~~~~~~dGV~VP~Gk~~~~~~~~~~L~yNEYIVYd~---~Qvr~rYLv~vkf~ 639 (643)
T PLN03124 572 PPGKLSTKGVGRTVPDPSEAKTLEDGVVVPLGKPVESPYSKGSLEYNEYIVYNV---DQIRMRYVLQVKFN 639 (643)
T ss_pred CCCceeEEeccCCCCCcccceecCCCeEeeCCccccCCCCCCccccCceEEech---hHeEEEEEEEEEEe
Confidence 346666531 0 011379999999 99999999988764
No 7
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=99.88 E-value=2.2e-22 Score=218.19 Aligned_cols=175 Identities=15% Similarity=0.248 Sum_probs=132.2
Q ss_pred CceEECCCCChHHHHHHHHHhcccCCCCC--CCcEEEEEEeccCCcccHHHHHHHHHHHHHHHHHcCCCCceeEeeeccC
Q 018942 72 NGLISLQEGDKVYDLISGRLISGLGVLGA--QAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANVKYAWYAGT 149 (348)
Q Consensus 72 ~~lv~L~~~s~ey~~V~~~F~~~~~~~~~--~~~I~~I~Rv~~~~~~n~~r~~~f~~~~~~l~~k~~g~~N~r~lfHGTs 149 (348)
..|.+|++++.||+.|++++..|-++.+. ..+|..|++|.+. ...++|..+++. ..|.++|||||+
T Consensus 767 ~~i~~L~~~s~ey~~I~~Yl~nT~~~th~~y~l~v~~IF~v~r~-----gE~~rf~~~~~~-------~~Nr~LLwHGSr 834 (981)
T PLN03123 767 CDISPLPHDSEDYKLIEKYLLTTHAPTHTDWSLELEEVFSLERE-----GEFDKYAPYKEK-------LKNRMLLWHGSR 834 (981)
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCccccccceeeEEEEeccc-----ccccchhhHhhc-------CCCceEEEcCCC
Confidence 56999999999999999999999765443 4579999999543 333445433221 369999999999
Q ss_pred hhhHHHHHhhcCCCC--CCCCCCCcccceeeeCCCCCCcccCcccccCC-CCcEEEEEEEeecCcceeeCCCCCCCCCCC
Q 018942 150 KDEICKIIEHGFGYC--GKPSNNGMYGCGVYLSPDDSPLECVKNSAIDR-EGMRYLLLCRVILGKQEVVHPGSDQYHPST 226 (348)
Q Consensus 150 ~~~i~~Il~~GF~~~--~~~~~~~~fG~GIYFA~~~~~s~S~~Y~~~d~-~G~r~mlLCrVllG~~~~v~pgs~q~~ps~ 226 (348)
..++.+|+++||.+. .++.+|.|||+|||||+.. ++|++||.+.. ++...||||+|+||++........ ...++
T Consensus 835 ~~N~~gILs~GLriaPpeap~tGymfGkGIYFAD~~--SKSanYc~~~~~~~~g~llLceVaLG~~~e~~~~~~-~~~~p 911 (981)
T PLN03123 835 LTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLV--SKSAQYCYTDRKNPVGLMLLSEVALGEIYELKKAKY-MDKPP 911 (981)
T ss_pred cccHHHHhhccCccCCccccccCccccceeEecchh--hhhhhhhcccCCCCceEEEEEEEecCChhhhccccc-cccCC
Confidence 999999999999974 4566899999999999877 78999998754 678899999999999854331111 11124
Q ss_pred CCCcceecC--------------------------------CCCCcEEEEEcCCCccccccccEEEEEcC
Q 018942 227 GEFESGVDN--------------------------------LQVPKKYILWSTNMNTHILPEYIISLKAP 264 (348)
Q Consensus 227 ~~yDSvVd~--------------------------------~~np~~yVV~~~~mN~qiyPeYlItyk~~ 264 (348)
.+|||+.+- .-..+|||||+. .|+...|||..+..
T Consensus 912 ~g~~S~~g~G~~~Pd~~~~~~~~dgv~vP~Gk~~~~~~~~~~L~yNEYIVYd~---~Qvr~rYLv~vkf~ 978 (981)
T PLN03123 912 RGKHSTKGLGKTVPQESEFVKWRDDVVVPCGKPVPSKVKASELMYNEYIVYNT---AQVKLQFLLKVRFK 978 (981)
T ss_pred CCceeeeecCCCCCCcccceecCCceEeeCCCCccCcccCCccccCceEEech---hHEEEEEEEEEEee
Confidence 566665310 012479999999 99999999988763
No 8
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=99.85 E-value=3.7e-21 Score=205.03 Aligned_cols=174 Identities=15% Similarity=0.221 Sum_probs=128.2
Q ss_pred CceEECCCCChHHHHHHHHHhcccCCCC-----CCCcEEEEEEeccCCcccHHHHHHHHHHHHHHHHHcCCCCceeEeee
Q 018942 72 NGLISLQEGDKVYDLISGRLISGLGVLG-----AQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANVKYAWY 146 (348)
Q Consensus 72 ~~lv~L~~~s~ey~~V~~~F~~~~~~~~-----~~~~I~~I~Rv~~~~~~n~~r~~~f~~~~~~l~~k~~g~~N~r~lfH 146 (348)
..|.+|+++|.||+.|++++.+|-++.+ -..+|..|+||.+.+ .. +|..++ ...|.++|||
T Consensus 591 ~~i~pLd~~S~eyk~I~~Yl~nT~~~th~~~~~y~l~v~~IF~veR~g---e~---rf~~~~--------~l~NR~LLWH 656 (815)
T PLN03122 591 CSISPVDKESDDYKMIVKYLEKTYEPVKVGDVSYSVSVENIFAVESSA---GP---SLDEIK--------KLPNKVLLWC 656 (815)
T ss_pred ceEEEcCCCCHHHHHHHHHHHhcCCCccccCcccceeEeEEEEeccCc---cc---cchhhc--------CCCCceEEec
Confidence 5699999999999999999999976644 136799999996432 23 443221 2369999999
Q ss_pred ccChhhHHHHHhhcCCCCC--CCCCCCcccceeeeCCCCCCcccCcccccC-CCCcEEEEEEEeecCcc--eeeCCCCC-
Q 018942 147 AGTKDEICKIIEHGFGYCG--KPSNNGMYGCGVYLSPDDSPLECVKNSAID-REGMRYLLLCRVILGKQ--EVVHPGSD- 220 (348)
Q Consensus 147 GTs~~~i~~Il~~GF~~~~--~~~~~~~fG~GIYFA~~~~~s~S~~Y~~~d-~~G~r~mlLCrVllG~~--~~v~pgs~- 220 (348)
|++..|+.+|+++||.+.. +|.+|.|||+|||||+.+ ++|++||.+. .++...||||.|+||++ +...++..
T Consensus 657 GSR~tN~~gILsqGLRIAPPEAPvtGYMFGKGIYFAD~~--SKSAnYC~t~~~~~~GlLlLcEVALG~~~~el~~~~~~~ 734 (815)
T PLN03122 657 GTRSSNLLRHLAKGFLPAVCSLPVPGYMFGKAIVCSDAA--AEAARYGFTAVDRPEGFLVLAVASLGDEVLELTKPPEDV 734 (815)
T ss_pred cchhhhHHHHhhCCCccCCcccCCCCCccCCeeEecchh--hhhhhhhccccCCCcceEEEEHhhcCchHHHhhcCchhh
Confidence 9999999999999999754 677999999999999877 7889999765 35677999999999996 33322100
Q ss_pred --------------CCCCCCCCC----ccee------------cCCCCCcEEEEEcCCCccccccccEEEEEcC
Q 018942 221 --------------QYHPSTGEF----ESGV------------DNLQVPKKYILWSTNMNTHILPEYIISLKAP 264 (348)
Q Consensus 221 --------------q~~ps~~~y----DSvV------------d~~~np~~yVV~~~~mN~qiyPeYlItyk~~ 264 (348)
...|.+..+ |-|+ +..-..+|||||+. .||.-.|||..+..
T Consensus 735 ~~~~~g~~Stkg~G~~~Pdp~~~~~~~dgV~VP~Gk~~~~~~~~~~L~yNEYIVYDv---aQvrirYL~~vkf~ 805 (815)
T PLN03122 735 KSYEEKKVGVKGLGRKKTDESEHFKWRDDITVPCGRLIPSEHKDSPLEYNEYAVYDP---KQVSIRFLVGVKYE 805 (815)
T ss_pred hccCCCCceeeecCCCcCCCccceecCCCeEEeCCCCccCCCCCcccccCceEEEch---hHEEEEEEEEEEee
Confidence 011211111 1111 11112479999999 99999999998874
No 9
>cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates. Bacterial toxins are cytoplasmic and catalyze the transfer of a single ADP_ribose unit to eukaryotic elongation factor 2, halting protein synthesis and killing the cell. Poly(ADP-ribose) polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length in part through poy(ADP_ribosylation) of telomere repeat binding factor 1 (TRF1). Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region o
Probab=99.76 E-value=7.2e-19 Score=151.83 Aligned_cols=111 Identities=17% Similarity=0.279 Sum_probs=85.9
Q ss_pred EeeeccChhhHHHHHhhcCCCCCCCC--CCCcccceeeeCCCCCCcccCcccccCCC---------------CcEEEEEE
Q 018942 143 YAWYAGTKDEICKIIEHGFGYCGKPS--NNGMYGCGVYLSPDDSPLECVKNSAIDRE---------------GMRYLLLC 205 (348)
Q Consensus 143 ~lfHGTs~~~i~~Il~~GF~~~~~~~--~~~~fG~GIYFA~~~~~s~S~~Y~~~d~~---------------G~r~mlLC 205 (348)
+|||||+..++.+|+++||+++..+. ++++||+|||||+++ ++|+.||.++.+ +.+.||++
T Consensus 1 ~l~HGs~~~n~~~I~~~Gl~~~~~~~~~~g~~~G~GiYfa~~~--s~S~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~fl~ 78 (137)
T cd01341 1 FLFHGSPPGNVISILKLGLRPASYGVLLNGGMFGKGIYSAPNI--SKSNGYSVGCDGQHVFQNGKPKVCGRELCVFGFLT 78 (137)
T ss_pred CccccCCccchHHHhhCCCCCCCccccccccccCceeeecCCh--HHhhhhhcccCCcccccccccccccccccceeEEE
Confidence 48999999999999999999988654 489999999999988 566899987765 33457776
Q ss_pred EeecCccee-----eCCCCCCCCCCCCCCccee----cCCCCCcEEEEEcCCCcccccccc
Q 018942 206 RVILGKQEV-----VHPGSDQYHPSTGEFESGV----DNLQVPKKYILWSTNMNTHILPEY 257 (348)
Q Consensus 206 rVllG~~~~-----v~pgs~q~~ps~~~yDSvV----d~~~np~~yVV~~~~mN~qiyPeY 257 (348)
+|++|.... ..|+.....+..+.||+++ |+..+|.|||||+.. +|+||+|
T Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~e~VV~~~~--~Qv~~~Y 137 (137)
T cd01341 79 LGVMSGATEESSRVLFPRNFRGATGAEVVDLLVAMCRDALLLPREYIIFEPY--SQVSIRY 137 (137)
T ss_pred EEEeccccccccccccccccCCCCCCeEEEcccccccchhhCCCeEEEecch--hhceecC
Confidence 666665432 3344443345567788888 578899999999941 7999998
No 10
>KOG1037 consensus NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins [Transcription; Replication, recombination and repair; Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.6e-08 Score=104.93 Aligned_cols=128 Identities=18% Similarity=0.264 Sum_probs=91.7
Q ss_pred CceEECCCCChHHHHHHHHHhcccCCCCCCCcEEEEEEeccCCcccHHHHHHHHHHHHHHHHH-cCCCCceeEeeeccCh
Q 018942 72 NGLISLQEGDKVYDLISGRLISGLGVLGAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQK-CGGDANVKYAWYAGTK 150 (348)
Q Consensus 72 ~~lv~L~~~s~ey~~V~~~F~~~~~~~~~~~~I~~I~Rv~~~~~~n~~r~~~f~~~~~~l~~k-~~g~~N~r~lfHGTs~ 150 (348)
..+..++.++.||+.+.+....+-...... ..+.+..+.....++. +.... .....|.+.+|||+..
T Consensus 309 c~~~~~~~~~~e~kmi~~~~~~~~~~~~~~-~~~~~~~l~k~~~~~e-----------~~~~~~~~~~~~r~llw~gs~~ 376 (531)
T KOG1037|consen 309 CKIEKLDKDSEEFKMIAQYVEKTHAKTSTV-KVVQIADLKKVNEKNE-----------ADRKVDISELINRQLLWHGSRF 376 (531)
T ss_pred hhhccccccchhHHHHHHHHHhhccccCcc-CceeehhHHHhhhccc-----------ccccccCcccccccchhcccce
Confidence 557788888999999999988874333322 2222433321111111 11111 1235799999999999
Q ss_pred hhHHHHHhhcCCCCCC--CCCCCcccceeeeCCCCCCcccCcccccC-CCCcEEEEEEEeecCcce
Q 018942 151 DEICKIIEHGFGYCGK--PSNNGMYGCGVYLSPDDSPLECVKNSAID-REGMRYLLLCRVILGKQE 213 (348)
Q Consensus 151 ~~i~~Il~~GF~~~~~--~~~~~~fG~GIYFA~~~~~s~S~~Y~~~d-~~G~r~mlLCrVllG~~~ 213 (348)
.++..|+.+|+..... +..+++||.|||||..+ ++|++||.+. ..+..+||+|.|++|+.-
T Consensus 377 ~n~a~~l~~g~~~~~~~~~~~g~~~gkgiyfa~~~--sks~~y~~~~~~k~~~~ll~~~~alg~~~ 440 (531)
T KOG1037|consen 377 GNLAGILSPGLRLAPSEAPVTGYMFGKGIYFADAA--SKSANYCVTMKGKPTGHLLLCDVALGKEQ 440 (531)
T ss_pred eeeeccccCCceecCCCCCceeeccccceEeeeec--ccccccccccccCchhhhhhhhhhccchh
Confidence 9999999999987653 34799999999999888 7889999765 566789999999999974
No 11
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=89.72 E-value=0.74 Score=42.04 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=39.4
Q ss_pred cchHHHHHHHH---cCCChh-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 018942 285 MPFPILISALS---KFLPPP-TVALMSKYYRDHKGKKVSRHELIQRVRQIAG 332 (348)
Q Consensus 285 ~~f~~L~~~l~---~~l~~~-~~~~i~~~y~~~~~~ki~r~~~v~~~r~ivG 332 (348)
+.|..-+..++ +.-++. ++....+.|+-=+.|.|+|+||.+.|+..+|
T Consensus 84 v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~ 135 (187)
T KOG0034|consen 84 VDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVG 135 (187)
T ss_pred cCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHc
Confidence 76666555554 444445 8889999999999999999999999999999
No 12
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=88.39 E-value=1.7 Score=41.15 Aligned_cols=63 Identities=22% Similarity=0.319 Sum_probs=54.5
Q ss_pred CCCCcchHHHHHHHHcCCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh-hH------HHHHHHHHh
Q 018942 281 TSPWMPFPILISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAG-DQ------LLIAVIKSY 343 (348)
Q Consensus 281 ~sp~~~f~~L~~~l~~~l~~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~ivG-d~------~L~~~i~~~ 343 (348)
..+-+-...|-..|.+.|++++...=..+...|=.+||||+||-+.++.+.| |+ +|.+++.+.
T Consensus 5 ~~~Ridl~~lk~~l~~~LG~~~~~~Y~~~l~~fl~~klsk~Efd~~~~~~L~~~~~~LHN~li~sIl~na 74 (252)
T PF12767_consen 5 QNSRIDLEELKSQLQKRLGPDRWKKYFQSLKRFLSGKLSKEEFDKECRRILGRENVHLHNQLILSILKNA 74 (252)
T ss_pred cccccCHHHHHHHHHHHHChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 3445677889999999999999999999999999999999999999999999 54 567777665
No 13
>PF12509 DUF3715: Protein of unknown function (DUF3715); InterPro: IPR022188 This domain family is found in eukaryotes, and is approximately 170 amino acids in length.
Probab=84.50 E-value=3.4 Score=36.96 Aligned_cols=115 Identities=15% Similarity=0.278 Sum_probs=72.1
Q ss_pred ccHHHHHHHHHHHHHHHHHcCC--CCceeEeeeccCh-hhHHHHHhhcCCCCCCCCCCCcccc---eeeeCCCCCCcccC
Q 018942 116 MGQAKIQSFQIFAKAVAQKCGG--DANVKYAWYAGTK-DEICKIIEHGFGYCGKPSNNGMYGC---GVYLSPDDSPLECV 189 (348)
Q Consensus 116 ~n~~r~~~f~~~~~~l~~k~~g--~~N~r~lfHGTs~-~~i~~Il~~GF~~~~~~~~~~~fG~---GIYFA~~~~~s~S~ 189 (348)
.|.++-..|...++++...... .--+.+.|.-... ..+..|+..|+.... ......|. |+|++..+....+.
T Consensus 2 ~n~~Ls~efse~~~~~~~~~~~~~eL~e~~~fl~~~~~~~~~~v~~~GL~v~~--~k~~~Lg~ps~gv~~~~~~D~~~~~ 79 (165)
T PF12509_consen 2 HNEALSKEFSEKRSSMKREGRSSSELPENYCFLSKESRSQVTSVCQRGLKVGN--QKGTILGKPSMGVYLSRHSDLLESQ 79 (165)
T ss_pred CCHHHHHHHhhhhhhhhhcCCChhhhhhhheeeecccchhhHHHHhccccccc--ccccccCCCCCCcccccCCchhhcc
Confidence 4677888888777777533221 2235556654433 567788999999752 24556777 99998554333222
Q ss_pred cccccCCCCcEEEEEEEeecCcceeeCCCC---CCCCCCCCCCcceec
Q 018942 190 KNSAIDREGMRYLLLCRVILGKQEVVHPGS---DQYHPSTGEFESGVD 234 (348)
Q Consensus 190 ~Y~~~d~~G~r~mlLCrVllG~~~~v~pgs---~q~~ps~~~yDSvVd 234 (348)
..-. ......+++.+|+-|++..+.+.. +..-++...||..+.
T Consensus 80 ~~~~--~~~~~~ii~~kv~~~k~k~i~~~~~~~~~~~~p~p~~d~h~~ 125 (165)
T PF12509_consen 80 PFIC--SSANGEIIIFKVLKGKVKKISDSNGSTQSFLDPTPSYDCHVS 125 (165)
T ss_pred hhhh--cCCCCceeEEeeccCcccccccccccccccCCCcccHHHHhh
Confidence 1111 112346899999999998877655 334455678999874
No 14
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=77.90 E-value=3.4 Score=28.99 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=38.0
Q ss_pred cchHHHHHHHHc---C-CChhhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 018942 285 MPFPILISALSK---F-LPPPTVALMSKYYRDHKGKKVSRHELIQRVRQ 329 (348)
Q Consensus 285 ~~f~~L~~~l~~---~-l~~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~ 329 (348)
|++..|..+|++ . +++.+.+.|...++.=+.|+|+-+||+..|+.
T Consensus 5 i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 5 ITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp EEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred ECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 566677777755 3 88999999999999999999999999998864
No 15
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=73.01 E-value=9 Score=26.53 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhh
Q 018942 301 PTVALMSKYYRDHKGKKVSRHELIQRVRQIAGD 333 (348)
Q Consensus 301 ~~~~~i~~~y~~~~~~ki~r~~~v~~~r~ivGd 333 (348)
..-+...+....|++++|++.++++.|..+.+|
T Consensus 2 ~~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~ 34 (47)
T PF02671_consen 2 EVYNEFLKILNDYKKGRISRSEVIEEVSELLRG 34 (47)
T ss_dssp HHHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Confidence 344566778889999999999999999999984
No 16
>PHA01748 hypothetical protein
Probab=71.69 E-value=10 Score=28.13 Aligned_cols=51 Identities=16% Similarity=0.329 Sum_probs=40.4
Q ss_pred HcCCChhhHHHHHHHHHHHhcCCCCHHHHHHHH-HHHhhhHHHHHHHHHhhhhcC
Q 018942 295 SKFLPPPTVALMSKYYRDHKGKKVSRHELIQRV-RQIAGDQLLIAVIKSYRAKQL 348 (348)
Q Consensus 295 ~~~l~~~~~~~i~~~y~~~~~~ki~r~~~v~~~-r~ivGd~~L~~~i~~~~~k~~ 348 (348)
+=.||++-++.|..+.++. .++|.++|+.. |..+.+.+...++..+|.+++
T Consensus 6 SvrLp~el~~eld~~a~~~---g~~RSE~Ir~Ai~~~~~~~~~~~~~~~~~~~~~ 57 (60)
T PHA01748 6 TFKIEEDLLELLDRYAIKH---GLNRSEAIRKAIEKMVKDELKKETVPVAKVEKI 57 (60)
T ss_pred EEECCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHHHhcccchhhhhhe
Confidence 3357777777777766655 37999999875 999999999999999998764
No 17
>PF15633 Tox-ART-HYD1: HYD1 signature containing ADP-ribosyltransferase
Probab=70.64 E-value=2.7 Score=34.36 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=29.5
Q ss_pred eeeccChhhHHHHHhhcCCCCCCCCCCCcccceeeeCCCC
Q 018942 144 AWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPDD 183 (348)
Q Consensus 144 lfHGTs~~~i~~Il~~GF~~~~~~~~~~~fG~GIYFA~~~ 183 (348)
+||=|+.....+|++.|--.-.+..-...||.|.||++.+
T Consensus 1 lyHYTs~~G~n~I~~s~~i~~~a~~p~~~~~~g~y~t~~a 40 (96)
T PF15633_consen 1 LYHYTSEKGYNGILESGIIKLKANNPKDRFGQGQYFTDIA 40 (96)
T ss_pred CccccchhhhHHhhccceEEeccCCccccCCCceEEEecC
Confidence 5788999999999988855422222223899999999755
No 18
>PF13151 DUF3990: Protein of unknown function (DUF3990)
Probab=63.93 E-value=3.3 Score=36.59 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHH
Q 018942 304 ALMSKYYRDHKGKKVSRHELIQRVRQ 329 (348)
Q Consensus 304 ~~i~~~y~~~~~~ki~r~~~v~~~r~ 329 (348)
+.+....+.|..|.||++++++.||.
T Consensus 108 d~v~~~i~~y~~g~is~e~~~~~L~~ 133 (154)
T PF13151_consen 108 DRVFQTINLYINGEISKEQALERLKF 133 (154)
T ss_pred ChHHHHHHHHHcCCCCHHHHHHHhcc
Confidence 35556777888899999999999884
No 19
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=59.98 E-value=2 Score=48.86 Aligned_cols=92 Identities=5% Similarity=-0.139 Sum_probs=59.7
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCCceeEeeeccChhhHHHHHhhcCCCCCCCCCCCcccceeeeCCCCCCcccCccc---
Q 018942 116 MGQAKIQSFQIFAKAVAQKCGGDANVKYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPDDSPLECVKNS--- 192 (348)
Q Consensus 116 ~n~~r~~~f~~~~~~l~~k~~g~~N~r~lfHGTs~~~i~~Il~~GF~~~~~~~~~~~fG~GIYFA~~~~~s~S~~Y~--- 192 (348)
.++..|+.+....+......--..++..+||+... +..+.-.+|+.+.. +.++++|.|+||+..++.. +.|-
T Consensus 1007 ~~~~~~e~~~~~~~~~~e~~~~~~~~~~~f~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~~~--d~~v~~~ 1081 (1143)
T KOG4177|consen 1007 DCRKTREAVTHATQLYNELIFVYMAKFVVFAKSNF--PNEGRLRCFCMTDD-KVDKTLEQQEYFAEVARSR--DIEVLGG 1081 (1143)
T ss_pred hcchhhhhhhHHHHHHHHHHHHHHHHHhhhccCCc--chhhccccccccCC-ccCcchhhHHHHHHhhhhh--hhhhhcc
Confidence 56666776665444332211113577889999763 45556678988753 5788999999999988433 4431
Q ss_pred -----ccCC------CCcEEEEEEEeecCcc
Q 018942 193 -----AIDR------EGMRYLLLCRVILGKQ 212 (348)
Q Consensus 193 -----~~d~------~G~r~mlLCrVllG~~ 212 (348)
.+.. ...+++.+|+|-+|..
T Consensus 1082 ~~~~~~~~~n~~p~~~~~~ql~~~~~~~~~~ 1112 (1143)
T KOG4177|consen 1082 KGGFAEPSGNDVPLTKAGQQLSFCFVPFLEN 1112 (1143)
T ss_pred ccceecccCccccceeccceeEEeeehhhhh
Confidence 1111 1248899999999986
No 20
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=57.03 E-value=28 Score=29.02 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=42.3
Q ss_pred chHHHHHHHHcCCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 018942 286 PFPILISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAG 332 (348)
Q Consensus 286 ~f~~L~~~l~~~l~~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~ivG 332 (348)
.+--++--+++.+++.+.+.+...-++|++|+|+....+..||..+-
T Consensus 54 vl~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~~~~~ 100 (117)
T PF08349_consen 54 VLQHIFGYFKKKLSSEEKQHFLDLIEDYREGKIPLSVPLTLLKHLAR 100 (117)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 55556778899999999999999999999999999999999998873
No 21
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=55.91 E-value=13 Score=33.74 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=27.3
Q ss_pred ceeEeeeccChhhHHHHHhhcCCCCCCCCCCCcccceeeeCCC
Q 018942 140 NVKYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPD 182 (348)
Q Consensus 140 N~r~lfHGTs~~~i~~Il~~GF~~~~~~~~~~~fG~GIYFA~~ 182 (348)
....|||||...++..|...|+.... -.=|+||+.
T Consensus 93 ~P~~lyHGT~~~~~~~I~~~GL~pm~--------R~hVHLs~~ 127 (179)
T PRK00819 93 PPAVLYHGTSSEELDSILEEGLKPMK--------RHYVHLSTD 127 (179)
T ss_pred CCceeEeCCCHHHHHHHHHhCCCccC--------CCeEEecCC
Confidence 35699999999999999999987532 124788864
No 22
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=54.50 E-value=31 Score=22.03 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 018942 304 ALMSKYYRDHKGKKVSRHELIQRVRQIAG 332 (348)
Q Consensus 304 ~~i~~~y~~~~~~ki~r~~~v~~~r~ivG 332 (348)
+.|.++-+.+.+|-||.+||-++-+.|.+
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~~ll~ 31 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKARLLS 31 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 45667777888999999999999887753
No 23
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=52.54 E-value=13 Score=23.21 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 018942 302 TVALMSKYYRDHKGKKVSRHELIQRVRQ 329 (348)
Q Consensus 302 ~~~~i~~~y~~~~~~ki~r~~~v~~~r~ 329 (348)
++..+.+.|+.=+.|+|+.+||.+.|++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 3567778888889999999999999985
No 24
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=51.83 E-value=11 Score=34.31 Aligned_cols=35 Identities=17% Similarity=0.062 Sum_probs=22.2
Q ss_pred ceeEeeeccChhhHHHHHhhcCCCCCCCCCCCcccceeeeCCC
Q 018942 140 NVKYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPD 182 (348)
Q Consensus 140 N~r~lfHGTs~~~i~~Il~~GF~~~~~~~~~~~fG~GIYFA~~ 182 (348)
....++|||...++..|+..|+... -..-|+||+.
T Consensus 104 ~p~~lyHGT~~~~~~~I~~~GL~~m--------~R~hVHls~~ 138 (186)
T PF01885_consen 104 PPPILYHGTYRKAWPSILEEGLKPM--------GRNHVHLSTG 138 (186)
T ss_dssp --SEEEE--BGGGHHHHHHH-B-----------SSSSEEEES-
T ss_pred CCCEEEEccchhhHHHHHHhCCCCC--------CCCEEEEeec
Confidence 4579999999999999999997653 2335899965
No 25
>PTZ00184 calmodulin; Provisional
Probab=50.02 E-value=40 Score=27.64 Aligned_cols=63 Identities=13% Similarity=0.187 Sum_probs=43.2
Q ss_pred CCCCcchHHHHHHHHcCCC----hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHH---hhhHHHHHHHHHh
Q 018942 281 TSPWMPFPILISALSKFLP----PPTVALMSKYYRDHKGKKVSRHELIQRVRQI---AGDQLLIAVIKSY 343 (348)
Q Consensus 281 ~sp~~~f~~L~~~l~~~l~----~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~i---vGd~~L~~~i~~~ 343 (348)
..-.++|..+..++...++ ..++..+.+.|+.-+.+.|++++|.+.++.+ +-+..+..++..+
T Consensus 60 ~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (149)
T PTZ00184 60 GNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 129 (149)
T ss_pred CCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhc
Confidence 3445888888887776543 3455666666666688999999999999886 1255566555543
No 26
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=48.66 E-value=35 Score=26.91 Aligned_cols=49 Identities=14% Similarity=0.063 Sum_probs=32.9
Q ss_pred CCCcchHHHHHHHHcC-CChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 018942 282 SPWMPFPILISALSKF-LPPPTVALMSKYYRDHKGKKVSRHELIQRVRQI 330 (348)
Q Consensus 282 sp~~~f~~L~~~l~~~-l~~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~i 330 (348)
.-.+++..|-.+++.. ++.+.+..|.+.++.-..+.|+.+||+..++.+
T Consensus 24 ~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 24 DGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 3356777776666553 455556666666665567889999998877655
No 27
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=48.31 E-value=50 Score=25.97 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=23.1
Q ss_pred HHHHHHHHHHH-h----cCCCCHHHHHHHHHHHhhh
Q 018942 303 VALMSKYYRDH-K----GKKVSRHELIQRVRQIAGD 333 (348)
Q Consensus 303 ~~~i~~~y~~~-~----~~ki~r~~~v~~~r~ivGd 333 (348)
+..|...|..| + .|+|+++||.+.|+...|+
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~ 42 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSE 42 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHH
Confidence 55566666666 2 3799999999999986554
No 28
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=47.51 E-value=73 Score=24.04 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhHHHHHHH
Q 018942 303 VALMSKYYRDHKGKKVSRHELIQRVRQIAGDQLLIAVI 340 (348)
Q Consensus 303 ~~~i~~~y~~~~~~ki~r~~~v~~~r~ivGd~~L~~~i 340 (348)
-+.|...-+-|++|+|+=+.|+|.+|...-++-+.-+.
T Consensus 25 eDtiy~L~~al~~g~I~~d~~lK~vR~LaReQF~~Ral 62 (65)
T PF09454_consen 25 EDTIYYLDRALQRGSIDLDTFLKQVRSLAREQFLKRAL 62 (65)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666788999999999999999999988776654
No 29
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=46.42 E-value=33 Score=25.32 Aligned_cols=49 Identities=29% Similarity=0.340 Sum_probs=34.3
Q ss_pred CChhhHHHHHHHHHHHhcCCCCHHHHHHHHHH----HhhhHHHHHHHHHhhhhc
Q 018942 298 LPPPTVALMSKYYRDHKGKKVSRHELIQRVRQ----IAGDQLLIAVIKSYRAKQ 347 (348)
Q Consensus 298 l~~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~----ivGd~~L~~~i~~~~~k~ 347 (348)
|.+.++. |..++-.-+..-+||++++..+-. .+.++.|..+|.+||.|.
T Consensus 6 Lt~~e~~-lL~~L~~~~~~~vs~~~l~~~lw~~~~~~~~~~~l~~~i~~LR~~l 58 (78)
T smart00862 6 LTPKEFR-LLELLLRNPGRVVSREELLEAVWGDDDDDVDDNTLDVHISRLRKKL 58 (78)
T ss_pred cCHHHHH-HHHHHHhCCCCccCHHHHHHHHcCCCCCCCccchHHHHHHHHHHHH
Confidence 4566666 445555555567999999998764 234678999999988764
No 30
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=43.49 E-value=15 Score=23.04 Aligned_cols=27 Identities=7% Similarity=0.150 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 018942 303 VALMSKYYRDHKGKKVSRHELIQRVRQ 329 (348)
Q Consensus 303 ~~~i~~~y~~~~~~ki~r~~~v~~~r~ 329 (348)
+..+.+.|+.=+.|+|+.+||...|+.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 345666677777899999999999875
No 31
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=43.13 E-value=84 Score=24.09 Aligned_cols=42 Identities=12% Similarity=0.236 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHhh--------hHHHHHHHHHh
Q 018942 302 TVALMSKYYRDHKG-----KKVSRHELIQRVRQIAG--------DQLLIAVIKSY 343 (348)
Q Consensus 302 ~~~~i~~~y~~~~~-----~ki~r~~~v~~~r~ivG--------d~~L~~~i~~~ 343 (348)
++..+...|..|-+ |.|+.++|.+.++...| ++-+..+++.+
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~ 60 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDL 60 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHh
Confidence 45555555555544 89999999999987545 45555555544
No 32
>cd00383 trans_reg_C Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and a response regulator. The former autophosphorylates in a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. The C-terminal effector domain contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunite of RNA polymerase.
Probab=43.03 E-value=28 Score=26.76 Aligned_cols=49 Identities=24% Similarity=0.342 Sum_probs=31.4
Q ss_pred CChhhHHHHHHHHHHHhcCCCCHHHHHHHHHH---HhhhHHHHHHHHHhhhhc
Q 018942 298 LPPPTVALMSKYYRDHKGKKVSRHELIQRVRQ---IAGDQLLIAVIKSYRAKQ 347 (348)
Q Consensus 298 l~~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~---ivGd~~L~~~i~~~~~k~ 347 (348)
|.+..+.+|.-+ -.-...-+||++++..+-. .+.+..|...|.+||.|.
T Consensus 24 Lt~~e~~lL~~L-~~~~~~~vs~~~l~~~lw~~~~~~~~~~l~~~I~rLRkkl 75 (95)
T cd00383 24 LTPKEFELLELL-ARNPGRVLSREQLLEAVWGDDYDVDDRTVDVHISRLRKKL 75 (95)
T ss_pred eCHHHHHHHHHH-HhCCCCcCCHHHHHHHhcCCCCCCCcccHHHHHHHHHHHh
Confidence 344444444333 3335667888888888842 256788888888888764
No 33
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=42.89 E-value=19 Score=33.59 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=22.6
Q ss_pred CCceeEeeeccChhhHHHHHhhcCCC
Q 018942 138 DANVKYAWYAGTKDEICKIIEHGFGY 163 (348)
Q Consensus 138 ~~N~r~lfHGTs~~~i~~Il~~GF~~ 163 (348)
......|+|||+..++..|+++|+..
T Consensus 117 ~~~p~~LyhGTs~~~l~~I~~~Gi~P 142 (211)
T COG1859 117 AEPPAVLYHGTSPEFLPSILEEGLKP 142 (211)
T ss_pred CCCCcEEEecCChhhhHHHHHhcCcc
Confidence 34667899999999999999999765
No 34
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=42.01 E-value=70 Score=25.18 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=31.8
Q ss_pred CChhhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHhh--hHHHHHHHHH
Q 018942 298 LPPPTVALMSKYYRDH---KGKKVSRHELIQRVRQIAG--DQLLIAVIKS 342 (348)
Q Consensus 298 l~~~~~~~i~~~y~~~---~~~ki~r~~~v~~~r~ivG--d~~L~~~i~~ 342 (348)
+++++...+...|..| +.|.|+.++|.+.||.. | ...+..+++.
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~ev~~i~~~ 52 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKS-GLPQTLLAKIWNL 52 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-CCCHHHHHHHHHH
Confidence 4566777777777776 56899999999999984 5 4455555544
No 35
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=41.81 E-value=52 Score=21.85 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=27.2
Q ss_pred CcchHHHHHHHHcCCChhhHHHHHHHHHHH---hcCCCCHHHHHHHH
Q 018942 284 WMPFPILISALSKFLPPPTVALMSKYYRDH---KGKKVSRHELIQRV 327 (348)
Q Consensus 284 ~~~f~~L~~~l~~~l~~~~~~~i~~~y~~~---~~~ki~r~~~v~~~ 327 (348)
.+++..+..++...-.+..-..+...++.+ +.+.|+-+||+..+
T Consensus 16 ~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 16 TISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred cCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 356666666666654444444455555555 56788888887754
No 36
>cd01436 Dipth_tox_like Mono-ADP-ribosylating toxins catalyze the transfer of ADP_ribose from NAD+ to eukaryotic Elongation Factor 2, halting protein synthesis. A single molecule of delivered toxin is sufficient to kill a cell. These toxins share mono-ADP-ribosylating activity with a variety of bacterial toxins, such as cholera toxin and pertussis toxin. The structural core is homologous to the poly-ADP ribosylating enzymes such as the PARP enzymes and Tankyrase. Diphtheria toxin is encoded by a lysogenic bacteriophage. Both diphtheria toxin and Pseudomonas aeruginosa exotoxin A are multi-domain proteins. These domains provide a EF2 ADP_ribosylating, receptor-binding, and intracellular trafficking/transmembrane functions .
Probab=37.95 E-value=33 Score=29.36 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=35.1
Q ss_pred eeeccChhhHHHHHhhcCCCCCCCCCC---CcccceeeeCCCCCCcccCcccccCCC
Q 018942 144 AWYAGTKDEICKIIEHGFGYCGKPSNN---GMYGCGVYLSPDDSPLECVKNSAIDRE 197 (348)
Q Consensus 144 lfHGTs~~~i~~Il~~GF~~~~~~~~~---~~fG~GIYFA~~~~~s~S~~Y~~~d~~ 197 (348)
.||||....+.+|.. |...+..+.++ ..| +|.|-|.+. ...+.|+.-.++
T Consensus 2 ~YHGT~~~~~~sI~~-gI~~~~~g~~~~~d~~W-~GfY~a~~~--~~A~GYa~d~E~ 54 (147)
T cd01436 2 SYHGTKPGYVDSIQK-GIQKPKSGTQGNYDDDW-KGFYSTDNK--YDAAGYSVDNEN 54 (147)
T ss_pred CccccchHHHHHHHh-hccCCCCCCCcchhhhh-cceeecCCH--hhhcceeeccCC
Confidence 489999999999987 77766543321 122 499999877 566889864443
No 37
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=37.61 E-value=1.1e+02 Score=23.94 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHhhhH
Q 018942 302 TVALMSKYYRDHK-----GKKVSRHELIQRVRQIAGDQ 334 (348)
Q Consensus 302 ~~~~i~~~y~~~~-----~~ki~r~~~v~~~r~ivGd~ 334 (348)
.+..|...|.+|- +++|++++|.+.|+...|+.
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~ 43 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNF 43 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHh
Confidence 4556666777776 45899999999998777753
No 38
>PTZ00183 centrin; Provisional
Probab=37.52 E-value=77 Score=26.41 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=35.3
Q ss_pred cchHHHHHHHHcC----CChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHH---hhhHHHHHHHHHh
Q 018942 285 MPFPILISALSKF----LPPPTVALMSKYYRDHKGKKVSRHELIQRVRQI---AGDQLLIAVIKSY 343 (348)
Q Consensus 285 ~~f~~L~~~l~~~----l~~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~i---vGd~~L~~~i~~~ 343 (348)
++|..++.++... .+..++..+.+.|+.=..|.|++++|...++.. .-+.-+..++..+
T Consensus 70 i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~ 135 (158)
T PTZ00183 70 IDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEA 135 (158)
T ss_pred EeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 5555555544432 334456666666666677888888888888754 1244444444443
No 39
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=36.01 E-value=72 Score=24.89 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=21.0
Q ss_pred HHHHHHHHH-HHhcC-CCCHHHHHHHHHHHhhh
Q 018942 303 VALMSKYYR-DHKGK-KVSRHELIQRVRQIAGD 333 (348)
Q Consensus 303 ~~~i~~~y~-~~~~~-ki~r~~~v~~~r~ivGd 333 (348)
+..+.+.|+ .-..| +|++++|.+.||...|+
T Consensus 11 l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~ 43 (92)
T cd05025 11 LINVFHAHSGKEGDKYKLSKKELKDLLQTELSD 43 (92)
T ss_pred HHHHHHHHhcccCCCCeECHHHHHHHHHHHHHH
Confidence 333444443 44567 59999999999986565
No 40
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=34.46 E-value=96 Score=27.69 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=41.8
Q ss_pred CCCCcchHHHHHHHHcCC-ChhhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHhhhHHHHHHHH
Q 018942 281 TSPWMPFPILISALSKFL-PPPTVALMSKYYRDH---KGKKVSRHELIQRVRQIAGDQLLIAVIK 341 (348)
Q Consensus 281 ~sp~~~f~~L~~~l~~~l-~~~~~~~i~~~y~~~---~~~ki~r~~~v~~~r~ivGd~~L~~~i~ 341 (348)
....|.|+.++.+|+..+ -.+.-+-|...++.| ..|+|+..+|++.|. -.|+++.-+-+.
T Consensus 68 ~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~-~lge~~~deev~ 131 (160)
T COG5126 68 GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLK-SLGERLSDEEVE 131 (160)
T ss_pred CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHH-hhcccCCHHHHH
Confidence 357799999999999988 334455666666665 458999999998887 446555444333
No 41
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=33.41 E-value=1.1e+02 Score=21.57 Aligned_cols=47 Identities=21% Similarity=0.162 Sum_probs=31.2
Q ss_pred cchHHHHHHHHc-CCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 018942 285 MPFPILISALSK-FLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIA 331 (348)
Q Consensus 285 ~~f~~L~~~l~~-~l~~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~iv 331 (348)
++...|..++.. .++...+..+.+.++.=..++|+-+||+..+..|.
T Consensus 16 i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 16 ISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 455555555543 24555566666666655678999999999887664
No 42
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=32.49 E-value=45 Score=33.57 Aligned_cols=58 Identities=29% Similarity=0.393 Sum_probs=37.5
Q ss_pred CCCCcccccc--eEeecCCCc---cceeE---ecCCCccccccccccccccCC---cCCCCcccCCCCCCCC
Q 018942 1 MANTNEITHG--FSILASNNL---TKHTL---VSPSKQTISFNSDVDTTHYDE---DESSSTVSDCESSVSG 61 (348)
Q Consensus 1 ~~~~~~~~~~--~~~~~~~~~---~~~~~---~~~~~~~~~~~s~~e~~~~~~---~~~~~~~~~~~~~~~~ 61 (348)
|||.-+-||+ |+||+..-+ -+|.| ||.-.+- .-.||=++.++ ...++++.||++....
T Consensus 113 MAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~V---Vr~IEn~~~d~~skP~~dV~I~dCGel~~~ 181 (372)
T KOG0546|consen 113 MANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEV---VREIENLETDEESKPLADVVISDCGELVKK 181 (372)
T ss_pred hhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhH---HHHHhccccccCCCCccceEeccccccccc
Confidence 8999988987 999855444 67888 7765543 23334333332 3345577899997665
No 43
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=32.34 E-value=33 Score=19.02 Aligned_cols=25 Identities=8% Similarity=0.142 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHH
Q 018942 305 LMSKYYRDHKGKKVSRHELIQRVRQ 329 (348)
Q Consensus 305 ~i~~~y~~~~~~ki~r~~~v~~~r~ 329 (348)
.+.+.++.-..+.|+.++|...++.
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3445555555678999999988875
No 44
>PF00486 Trans_reg_C: Transcriptional regulatory protein, C terminal; InterPro: IPR001867 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain that is almost always found associated with the response regulator receiver domain (see IPR001789 from INTERPRO). It may play a role in DNA binding [].; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2K4J_A 2JPB_A 1ODD_A 1OPC_A 1KGS_A 2PMU_E 2JZY_A 1GXP_B 1QQI_A 2Z33_A ....
Probab=32.28 E-value=53 Score=24.22 Aligned_cols=49 Identities=31% Similarity=0.369 Sum_probs=35.8
Q ss_pred CChhhHHHHHHHHHHHhcCCCCHHHHHHHHHH---HhhhHHHHHHHHHhhhhc
Q 018942 298 LPPPTVALMSKYYRDHKGKKVSRHELIQRVRQ---IAGDQLLIAVIKSYRAKQ 347 (348)
Q Consensus 298 l~~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~---ivGd~~L~~~i~~~~~k~ 347 (348)
|++....+|.-.. .-...-+||++++..+=. -+.++-|...|.+||.|.
T Consensus 6 Lt~~e~~lL~~L~-~~~~~~vs~~~l~~~~w~~~~~~~~~~l~~~I~rLR~kL 57 (77)
T PF00486_consen 6 LTPKEFRLLELLL-RNPGRVVSREELIEALWGDEEDVSDNSLDVHISRLRKKL 57 (77)
T ss_dssp SSHHHHHHHHHHH-HTTTSEEEHHHHHHHHTSSSSTTCTHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH-hCCCCCCCHHHhCChhhhcccccchhhHHHHHHHHHHHH
Confidence 5566666665444 335566899999998855 356899999999999874
No 45
>COG3710 CadC DNA-binding winged-HTH domains [Transcription]
Probab=28.52 E-value=51 Score=28.83 Aligned_cols=48 Identities=29% Similarity=0.391 Sum_probs=38.7
Q ss_pred CCChhhHHHHHHHHHHHhcCCCCHHHHHHHH--HHHhhhHHHHHHHHHhhh
Q 018942 297 FLPPPTVALMSKYYRDHKGKKVSRHELIQRV--RQIAGDQLLIAVIKSYRA 345 (348)
Q Consensus 297 ~l~~~~~~~i~~~y~~~~~~ki~r~~~v~~~--r~ivGd~~L~~~i~~~~~ 345 (348)
.|++..+++|.-+++ ....=|||+||+.+| +.+|.|.-|...|..||.
T Consensus 31 ~l~~~~~~lL~~L~e-~~geVvsk~eL~~~VW~~~~v~~~~Ltq~I~~LRr 80 (148)
T COG3710 31 KLGPRELKLLSLLLE-RAGEVVSKDELLDAVWPGRIVTVNTLTQAISALRR 80 (148)
T ss_pred EecHHHHHHHHHHHh-ccCceecHHHHHHHhCCCceEccChHHHHHHHHHH
Confidence 467778888888777 455568999999988 667777779999999885
No 46
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=27.78 E-value=74 Score=30.57 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=26.6
Q ss_pred HHHhcCCCCHHHHHHHHHHHhhhHHHHHHHH
Q 018942 311 RDHKGKKVSRHELIQRVRQIAGDQLLIAVIK 341 (348)
Q Consensus 311 ~~~~~~ki~r~~~v~~~r~ivGd~~L~~~i~ 341 (348)
...+.|+||++||.+.|+.-.|.++|...|.
T Consensus 29 ~~~~~g~it~~e~~~~~~~~~g~~~l~~li~ 59 (283)
T PRK02998 29 VTSKVGNITEKELSKELRQKYGESTLYQMVL 59 (283)
T ss_pred EEecCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999988887553
No 47
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=27.71 E-value=2.8e+02 Score=21.64 Aligned_cols=51 Identities=6% Similarity=0.061 Sum_probs=39.6
Q ss_pred HHHcCCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh-hHHHHHHHHHh
Q 018942 293 ALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAG-DQLLIAVIKSY 343 (348)
Q Consensus 293 ~l~~~l~~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~ivG-d~~L~~~i~~~ 343 (348)
.=+.-++++++..|.+.|..+-.+..+-+|-+..++...+ +..+...+.-+
T Consensus 23 LrR~Gfs~~~i~~l~~ayr~l~~~~~~~~~a~~~l~~~~~~~~~v~~~~~Fi 74 (83)
T PF13720_consen 23 LRRRGFSKEEISALRRAYRILFRSGLTLEEALEELEEEYPDSPEVREIVDFI 74 (83)
T ss_dssp HHHTTS-HHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 3356689999999999999999999999999999999766 55555555444
No 48
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=27.49 E-value=1.1e+02 Score=24.00 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=36.5
Q ss_pred CcchHHHHHHHH------cCCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 018942 284 WMPFPILISALS------KFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIA 331 (348)
Q Consensus 284 ~~~f~~L~~~l~------~~l~~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~iv 331 (348)
.++...|..+|+ ..+++++.+.+.+..+.=..|+|+-++|++.|..++
T Consensus 28 ~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 28 TLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred EECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 566677777775 346777777777777777889999999998887653
No 49
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=26.50 E-value=71 Score=27.93 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=35.4
Q ss_pred CChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHH---hhhHHHHHHHHHhhhhc
Q 018942 298 LPPPTVALMSKYYRDHKGKKVSRHELIQRVRQI---AGDQLLIAVIKSYRAKQ 347 (348)
Q Consensus 298 l~~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~i---vGd~~L~~~i~~~~~k~ 347 (348)
|.+.+.+++.-... ....-+||+++.+.+-.. ..++.|...|.+||.|.
T Consensus 160 Lt~~E~~ll~~l~~-~~~~v~sr~~l~~~v~~~~~~~~~~~~~~~i~~LR~Kl 211 (221)
T PRK10766 160 LTKAEYELLVAFVT-NPGQVLSRERLLRMLSHRVENPNDRTIDVLIRRLRHKL 211 (221)
T ss_pred CCHHHHHHHHHHHH-CCCceEcHHHHHHHhcCCCCCCCCccHHHHHHHHHHhC
Confidence 44566665544333 566667999999999752 35789999999999885
No 50
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=25.97 E-value=75 Score=28.34 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=32.5
Q ss_pred ChhhHHHHHHHHHHHhcCCCCHHHHHHHHHH--Hh-hhHHHHHHHHHhhhhc
Q 018942 299 PPPTVALMSKYYRDHKGKKVSRHELIQRVRQ--IA-GDQLLIAVIKSYRAKQ 347 (348)
Q Consensus 299 ~~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~--iv-Gd~~L~~~i~~~~~k~ 347 (348)
.+.+..+|..+. .....-+||+++.+.+.. .. +|+.|...|++||.|.
T Consensus 163 t~~E~~lL~~l~-~~~~~v~sr~~l~~~vw~~~~~~~~~~i~~~i~rlR~kl 213 (240)
T PRK10701 163 STADFDLLWELA-THAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKL 213 (240)
T ss_pred CHHHHHHHHHHH-hCCCccCcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHhc
Confidence 445555554332 233344599999999964 33 4889999999999885
No 51
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=25.84 E-value=98 Score=24.20 Aligned_cols=48 Identities=10% Similarity=0.041 Sum_probs=34.0
Q ss_pred CCcchHHHHHHHHcCC----C----hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 018942 283 PWMPFPILISALSKFL----P----PPTVALMSKYYRDHKGKKVSRHELIQRVRQI 330 (348)
Q Consensus 283 p~~~f~~L~~~l~~~l----~----~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~i 330 (348)
-+++-..|..+|...+ + ..+++.+.+.++.-+.|+|+-++|++.+..+
T Consensus 25 ~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 25 DTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred ccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3566666666665433 3 5667777777766678999999999877654
No 52
>PTZ00184 calmodulin; Provisional
Probab=25.83 E-value=1.8e+02 Score=23.69 Aligned_cols=50 Identities=6% Similarity=-0.059 Sum_probs=32.2
Q ss_pred CCCCcchHHHHHHHHc---CCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 018942 281 TSPWMPFPILISALSK---FLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQI 330 (348)
Q Consensus 281 ~sp~~~f~~L~~~l~~---~l~~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~i 330 (348)
.+-.+++..|..+|.. ......+..+.+.++.=..|.|+.++|++.+...
T Consensus 24 ~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 24 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred CCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 3445666666655543 3344445555555555567899999999998865
No 53
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=25.52 E-value=93 Score=24.60 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=35.2
Q ss_pred CcchHHHHHHHHcCCC--------hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 018942 284 WMPFPILISALSKFLP--------PPTVALMSKYYRDHKGKKVSRHELIQRVRQIA 331 (348)
Q Consensus 284 ~~~f~~L~~~l~~~l~--------~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~iv 331 (348)
.++...|-..+.+.+| +..++.+.+..+.=+.|+|+=+||++.|..++
T Consensus 27 ~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 27 QLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred eECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 5677777777777654 45566666666555779999999999887764
No 54
>PTZ00183 centrin; Provisional
Probab=24.94 E-value=86 Score=26.10 Aligned_cols=46 Identities=9% Similarity=0.088 Sum_probs=33.5
Q ss_pred CcchHHHHHHHH---cCCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 018942 284 WMPFPILISALS---KFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQ 329 (348)
Q Consensus 284 ~~~f~~L~~~l~---~~l~~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~ 329 (348)
.++...+...+. ..+....+..+...++.=+.|.|+.++|+..|+.
T Consensus 106 ~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 106 KISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred cCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 355555555554 4577777777777777667899999999988875
No 55
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=23.97 E-value=1.3e+02 Score=23.87 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=33.5
Q ss_pred CcchHHHHHHHHc----CCCh-hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 018942 284 WMPFPILISALSK----FLPP-PTVALMSKYYRDHKGKKVSRHELIQRVRQIAG 332 (348)
Q Consensus 284 ~~~f~~L~~~l~~----~l~~-~~~~~i~~~y~~~~~~ki~r~~~v~~~r~ivG 332 (348)
.++...|-.+|++ ++.. .+++.+.+..+.=..|+|+=+||++.|..++-
T Consensus 25 ~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 25 SLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred eECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 4555555555554 3444 56666666666667799999999988877653
No 56
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=23.73 E-value=95 Score=29.85 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=27.1
Q ss_pred HHHhcCCCCHHHHHHHHHHHhhhHHHHHHHH
Q 018942 311 RDHKGKKVSRHELIQRVRQIAGDQLLIAVIK 341 (348)
Q Consensus 311 ~~~~~~ki~r~~~v~~~r~ivGd~~L~~~i~ 341 (348)
.....++||++||.+.|+...|.++|...|.
T Consensus 28 ~~~~~~~IT~~e~~~~~k~~~~~~~L~~~I~ 58 (287)
T PRK03095 28 VTSKAGDITKDEFYEQMKTQAGKQVLNNMVM 58 (287)
T ss_pred EEecCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999888887774
No 57
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=22.83 E-value=53 Score=25.32 Aligned_cols=28 Identities=11% Similarity=0.311 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHHhhhHHHHHHHHHhh
Q 018942 316 KKVSRHELIQRVRQIAGDQLLIAVIKSYR 344 (348)
Q Consensus 316 ~ki~r~~~v~~~r~ivGd~~L~~~i~~~~ 344 (348)
+.+||++|.++.=.-+|| +|-+-+.-||
T Consensus 41 C~ls~edF~~~~p~~~Gd-IL~~hL~~L~ 68 (71)
T cd08533 41 CALGKERFLELAPDFVGD-ILWEHLEILQ 68 (71)
T ss_pred HcCCHHHHHHHcCCCcch-HHHHHHHHHH
Confidence 679999999998777899 6666666665
No 58
>PTZ00315 2'-phosphotransferase; Provisional
Probab=22.60 E-value=58 Score=34.89 Aligned_cols=33 Identities=9% Similarity=-0.055 Sum_probs=25.1
Q ss_pred eEeeeccChhhHHHHHhhc-CCCCCCCCCCCcccceeeeCCC
Q 018942 142 KYAWYAGTKDEICKIIEHG-FGYCGKPSNNGMYGCGVYLSPD 182 (348)
Q Consensus 142 r~lfHGTs~~~i~~Il~~G-F~~~~~~~~~~~fG~GIYFA~~ 182 (348)
..+||||...++..|++.| +..-. .+ =||||..
T Consensus 477 ~~lyHGT~~~~~~sI~~~G~L~~M~--R~------HVHLs~~ 510 (582)
T PTZ00315 477 PVAVHGTYWSAWKAIQRCGYLSTMT--RQ------HIHFAKG 510 (582)
T ss_pred CeEEeCCcHHHHHHHHHcCCccccC--CC------eEEecCC
Confidence 4799999999999999999 65421 12 3788854
No 59
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=22.13 E-value=1e+02 Score=27.75 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=23.1
Q ss_pred cCCCCHHHHHHHHHHHhh-----hHHHHHHHHHhhhh
Q 018942 315 GKKVSRHELIQRVRQIAG-----DQLLIAVIKSYRAK 346 (348)
Q Consensus 315 ~~ki~r~~~v~~~r~ivG-----d~~L~~~i~~~~~k 346 (348)
++|+|+++||+-+|.+.. +..|..+-.++..+
T Consensus 147 ~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~~~ 183 (185)
T cd00171 147 KKKMTLEDFIKNLRGINDGEDFPREFLKELYDSIKNN 183 (185)
T ss_pred CCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhC
Confidence 578899999998887654 56676666665543
No 60
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=21.52 E-value=97 Score=27.52 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=33.5
Q ss_pred CChhhHHHHHHHHHHHhcCCCCHHHHHHHHHH---HhhhHHHHHHHHHhhhhc
Q 018942 298 LPPPTVALMSKYYRDHKGKKVSRHELIQRVRQ---IAGDQLLIAVIKSYRAKQ 347 (348)
Q Consensus 298 l~~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~---ivGd~~L~~~i~~~~~k~ 347 (348)
|.+.+.++|.- .......-+||+++.+.+.. -.+++.|...|.+||.|.
T Consensus 162 Lt~~E~~lL~~-L~~~~~~~~sr~~l~~~vw~~~~~~~~~~l~~~i~~LR~kl 213 (239)
T PRK09468 162 LTTGEFAVLKA-LVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRLI 213 (239)
T ss_pred cCHHHHHHHHH-HHhCCCccCcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHh
Confidence 44455555543 33356677799999998865 235788888899988874
No 61
>PRK09108 type III secretion system protein HrcU; Validated
Probab=21.23 E-value=2e+02 Score=28.93 Aligned_cols=56 Identities=14% Similarity=0.138 Sum_probs=47.8
Q ss_pred HHHHHcCCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 018942 291 ISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAK 346 (348)
Q Consensus 291 ~~~l~~~l~~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~ivGd~~L~~~i~~~~~k 346 (348)
+..+-=.+.-.-.|.+...|.-.|+-|+||+|.=+-.++-=||-.+++-++++|..
T Consensus 190 ~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq~~re 245 (353)
T PRK09108 190 AVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKRLARE 245 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 33333445567889999999999999999999999999999999999999999864
No 62
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=20.52 E-value=1.9e+02 Score=22.60 Aligned_cols=47 Identities=19% Similarity=0.153 Sum_probs=31.0
Q ss_pred CcchHHHHHHHHcC--------CChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 018942 284 WMPFPILISALSKF--------LPPPTVALMSKYYRDHKGKKVSRHELIQRVRQI 330 (348)
Q Consensus 284 ~~~f~~L~~~l~~~--------l~~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~i 330 (348)
.++...|..+|+.. ++...++.+.+.++.=..|+|+-++|++.+..+
T Consensus 26 ~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 26 TLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred eECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 46777777777652 344445555554444467899999999877643
No 63
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=20.46 E-value=1.1e+02 Score=30.44 Aligned_cols=57 Identities=12% Similarity=0.209 Sum_probs=43.3
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHHhc----CCC------CHHHHHHHHHHHhhhHHHHHHHHHhhhhc
Q 018942 290 LISALSKFLPPPTVALMSKYYRDHKG----KKV------SRHELIQRVRQIAGDQLLIAVIKSYRAKQ 347 (348)
Q Consensus 290 L~~~l~~~l~~~~~~~i~~~y~~~~~----~ki------~r~~~v~~~r~ivGd~~L~~~i~~~~~k~ 347 (348)
.|-.+++.|| .-++.|.++|.++.+ ..| .-+.+++.++.++|+.-..-+|++.+.|.
T Consensus 273 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (342)
T PRK12557 273 HLLEKQKDLD-AALEILENLDEDLLKEIEEAEIKPTTLVAAQALVKEIKTLIGGRAAEGAIRRSMRKL 339 (342)
T ss_pred CcchhhhhHH-HHHHHHHHHHHHHhhccccCccccceecChHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 3444555555 578889999999843 333 34678999999999999999999888764
No 64
>PRK10167 hypothetical protein; Provisional
Probab=20.18 E-value=2.4e+02 Score=25.29 Aligned_cols=46 Identities=2% Similarity=0.024 Sum_probs=40.2
Q ss_pred hHHHHHHHHcCCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 018942 287 FPILISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAG 332 (348)
Q Consensus 287 f~~L~~~l~~~l~~~~~~~i~~~y~~~~~~ki~r~~~v~~~r~ivG 332 (348)
+--++--+++.+++.+.+.+...-++||.|+|+....+-.+|..+-
T Consensus 96 L~Hi~GYFKk~Ls~~EKq~l~~lI~~Yr~g~vpl~vpltlL~h~~~ 141 (169)
T PRK10167 96 LMHVQGYFRPHIDSTERQQLAALIDSYRRGEQPLLAPLMRIKHYMA 141 (169)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3445667899999999999999999999999999999999888774
Done!