Query 018943
Match_columns 348
No_of_seqs 147 out of 794
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 08:27:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.9 9.1E-09 3.1E-13 83.7 9.6 98 9-127 5-103 (110)
2 2i68_A Protein EMRE; transmemb 98.8 8E-09 2.7E-13 87.4 5.7 98 9-127 5-103 (137)
3 2i68_A Protein EMRE; transmemb 97.4 0.00041 1.4E-08 58.3 7.4 62 245-312 44-105 (137)
4 3b5d_A Multidrug transporter E 97.3 0.0029 9.9E-08 50.9 10.9 63 245-313 44-106 (110)
5 3o7q_A L-fucose-proton symport 23.0 3.1E+02 0.011 24.8 8.9 35 48-82 250-284 (438)
6 2k21_A Potassium voltage-gated 13.3 18 0.00062 29.5 -2.1 51 290-340 54-106 (138)
7 3b9w_A Ammonium transporter fa 10.4 1.1E+03 0.036 22.6 10.1 30 248-277 284-313 (407)
8 1qz7_B Axin; beta-catenin, pro 9.9 1.1E+02 0.0036 22.1 1.2 26 304-329 21-46 (70)
9 3kp9_A Vkorc1/thioredoxin doma 9.3 9.8E+02 0.034 21.5 10.4 47 258-304 127-174 (291)
10 3rko_J NADH-quinone oxidoreduc 8.8 3.2E+02 0.011 23.3 4.2 44 274-321 128-171 (184)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.87 E-value=9.1e-09 Score=83.70 Aligned_cols=98 Identities=15% Similarity=0.146 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhhhhHHHhhh-
Q 018943 9 FINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAAL- 87 (348)
Q Consensus 9 ~lal~~a~~~a~G~~lqk~a~~~~~~~~~~~~~~~~~~~~~~~~l~~p~w~~G~~~~~~g~~~~~~al~~~p~slv~Pl- 87 (348)
++.+++.++-+.|+.+.|++.. .. +.+.++.+..++++++.+...++...|.+.+.|+
T Consensus 5 l~l~~a~~~e~~~~~~lK~s~~-----------------~~----~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~ 63 (110)
T 3b5d_A 5 IYLGGAILAEVIGTTLMKFSEG-----------------FT----RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIW 63 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhccC-----------------cc----hHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHH
Confidence 4556788889999999998721 00 1234678888899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEe
Q 018943 88 GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (348)
Q Consensus 88 ~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~ 127 (348)
.+++.+++.+++.+++||++++.++.|..+++.|+.++..
T Consensus 64 ~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred hhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999887644
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.75 E-value=8e-09 Score=87.37 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhccccCCCCCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHhhhhhHHHhhh-
Q 018943 9 FINLVGSIAINFGTNLLKLGHIEREKHSTLDSDGTNGKHSLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQSLLAAL- 87 (348)
Q Consensus 9 ~lal~~a~~~a~G~~lqk~a~~~~~~~~~~~~~~~~~~~~~~~~l~~p~w~~G~~~~~~g~~~~~~al~~~p~slv~Pl- 87 (348)
++.+++.++-+.|+.+.|++.. . . +.+.++.|++++++++.++..++...|.+.++|+
T Consensus 5 l~Ll~ail~ev~~~~~lK~s~g---------------~--~----~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw 63 (137)
T 2i68_A 5 IYLGGAILAEVIGTTLMKFSEG---------------F--T----RLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIW 63 (137)
T ss_dssp HHHHHHHHHHHHHHHHC---------------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc---------------c--c----hHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHH
Confidence 3456778889999999998731 0 0 1234678999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhccccchhhhhHHHHhhhcceeEEe
Q 018943 88 GSVQFVSNIAFSYFVFNKMVTVKVLVATAFIVLGNIFLVS 127 (348)
Q Consensus 88 ~~~~lv~~~~~s~~~l~e~~~~~~~~g~~li~~G~~~iv~ 127 (348)
.+++.+++.+++.+++||+++..+++|++++++|+.++..
T Consensus 64 ~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999887644
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.37 E-value=0.00041 Score=58.33 Aligned_cols=62 Identities=10% Similarity=0.097 Sum_probs=43.6
Q ss_pred HHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHHhhhhccCCC
Q 018943 245 MARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDE 312 (348)
Q Consensus 245 ~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~ 312 (348)
..++++++++.|.+..+|+....-++.+.+.|.++|+|..+. . -.+|.++++.||+++.+.+
T Consensus 44 ~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~--~----~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 44 FWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL--P----AIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCH--H----HHHHHHHHHHHHHHHhcCC
Confidence 456799999999999999988899999999999999996533 2 3478888999999997654
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.25 E-value=0.0029 Score=50.85 Aligned_cols=63 Identities=11% Similarity=0.126 Sum_probs=53.3
Q ss_pred HHHHhhhhccccccchhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHHhhhhccCCCC
Q 018943 245 MARLNEGLSLFDAILIVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDES 313 (348)
Q Consensus 245 ~~~Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~ 313 (348)
..++++++++.|.+..+|+....-++.+.+.|.++|+|.. +..+ .+|..+++.||+++...++
T Consensus 44 ~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~--s~~~----~~Gi~lIi~Gv~~l~~~~~ 106 (110)
T 3b5d_A 44 FWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRL--DLPA----IIGMMLICAGVLIINLLSR 106 (110)
T ss_pred HHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCC--CHHH----HHHHHHHHHHHHHHhcCCC
Confidence 4567899999999999999989999999999999999964 4443 5788889999999987653
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=23.01 E-value=3.1e+02 Score=24.76 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=20.6
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHhhhhhH
Q 018943 48 SLKPIVHYHSWRVGILVFLLGNCLNFISFGYAAQS 82 (348)
Q Consensus 48 ~~~~~l~~p~w~~G~~~~~~g~~~~~~al~~~p~s 82 (348)
..+..+|+|.++............+.....+.|..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (438)
T 3o7q_A 250 SLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRY 284 (438)
T ss_dssp HHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888877776655444443344444444
No 6
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=13.26 E-value=18 Score=29.49 Aligned_cols=51 Identities=16% Similarity=0.123 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhhhhcc--CCCCCCccchhhhHHHHHhhhhcccceeeEE
Q 018943 290 RATMFILGTASVFIGISLLA--PDESKGILMSSLLRSIISEIWTRTYSLNFQV 340 (348)
Q Consensus 290 ~~~~~~~G~~vi~~GV~lLs--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (348)
-++++++|+.-.+.+-++|+ |++..++..++++--+.+..|-.-+|=-||+
T Consensus 54 lYIL~vmgffgff~~GImLsYiRSKk~E~s~DPy~~YIe~d~W~ek~K~y~q~ 106 (138)
T 2k21_A 54 LYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNVYIESDAWQEKDKAYVQA 106 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTTTTSCTTTCCSCCHHHHHH
T ss_pred ehHHHHHHHHHHHHHHHHHHHhHhhhccccCCcHHHHHHHHHHHHhhHHHHHH
Confidence 45777778777777777776 4555566667787776677798877766664
No 7
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=10.35 E-value=1.1e+03 Score=22.61 Aligned_cols=30 Identities=7% Similarity=-0.060 Sum_probs=21.5
Q ss_pred HhhhhccccccchhhhHHHHHHHHHHHhhh
Q 018943 248 LNEGLSLFDAILIVPMFQIAWTSFSICTGF 277 (348)
Q Consensus 248 Ln~aL~~~d~~~vvP~~~v~~~~~si~~G~ 277 (348)
+++-++.-|+.-+.|+=-+.=...++..|.
T Consensus 284 l~~~l~iDD~l~a~~vHgv~Gi~G~l~~gl 313 (407)
T 3b9w_A 284 LESKAKTIDTCGVHNLHGLPGLLGGFSAIL 313 (407)
T ss_dssp HHHHSCCCCTTCHHHHTTHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCCCeecchHHHHHHHHHHHH
Confidence 455578899999999876666666666543
No 8
>1qz7_B Axin; beta-catenin, protein-protein complex, cell adhesion; 2.20A {Xenopus laevis}
Probab=9.86 E-value=1.1e+02 Score=22.12 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=20.1
Q ss_pred hhhhccCCCCCCccchhhhHHHHHhh
Q 018943 304 GISLLAPDESKGILMSSLLRSIISEI 329 (348)
Q Consensus 304 GV~lLs~~~~~~~~~~~~~~~~~~~~ 329 (348)
|..-+..++..+++.++-+||||+-.
T Consensus 21 g~~g~~~rd~~EedPesILDeHvsRV 46 (70)
T 1qz7_B 21 GCVGMQIRDAHEENPESILDEHVQRV 46 (70)
T ss_pred cccccccccccccChHHHHHHHHHHH
Confidence 33445567888899999999999875
No 9
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=9.33 E-value=9.8e+02 Score=21.51 Aligned_cols=47 Identities=4% Similarity=-0.126 Sum_probs=25.3
Q ss_pred cchhhhHHHHHHHHHHHhhhhhcc-ccccCChHHHHHHHHHHHHHHHh
Q 018943 258 ILIVPMFQIAWTSFSICTGFVYFQ-EYQVFDALRATMFILGTASVFIG 304 (348)
Q Consensus 258 ~~vvP~~~v~~~~~si~~G~i~f~-E~~~~~~~~~~~~~~G~~vi~~G 304 (348)
-...|.+.+.+.+.....-..+.+ ++++.+..-...+.++.++++.+
T Consensus 127 ~a~C~~C~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 174 (291)
T 3kp9_A 127 RQFCMYCTTAIILVAGLGLVTVLGHRWLDGGKLAFSYILVAFLTLVTT 174 (291)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHSSCHHHHCTHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHH
Confidence 346677666666655554444444 45555544445555665544333
No 10
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=8.78 E-value=3.2e+02 Score=23.28 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=24.4
Q ss_pred HhhhhhccccccCChHHHHHHHHHHHHHHHhhhhccCCCCCCccchhh
Q 018943 274 CTGFVYFQEYQVFDALRATMFILGTASVFIGISLLAPDESKGILMSSL 321 (348)
Q Consensus 274 ~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs~~~~~~~~~~~~ 321 (348)
--|..+|.++. =+.+.+. +=+++..+|.+.|+|++.+++..++.
T Consensus 128 ~iG~~Lft~Y~--lpFElaS--vlLLvAmIGAIvLarr~~~~~~~~~~ 171 (184)
T 3rko_J 128 AVGITLFGPYV--LAVELAS--MLLLAGLVVAFHVGREERAGEVLSNR 171 (184)
T ss_dssp HHHHHHTTTSH--HHHHHHH--HHHHHHHHHHHHHHCCCCCSSCC---
T ss_pred HHHHHHHHHHH--HHHHHHH--HHHHHHHHHHHHHHhccccccccccc
Confidence 45777777752 1222222 22345567888899988777665443
Done!