Query 018943
Match_columns 348
No_of_seqs 147 out of 794
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 08:27:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018943.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018943hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p7tc1 f.14.1.1 (C:86-119) Po 11.5 96 0.007 17.2 2.7 25 81-105 9-33 (34)
2 d1r3jc_ f.14.1.1 (C:) Potassiu 9.9 1.8E+02 0.013 19.9 4.8 27 279-308 56-82 (103)
3 d1iwga7 f.35.1.1 (A:7-37,A:331 8.4 1.7E+02 0.012 22.7 4.4 71 260-331 67-141 (199)
4 d2axtj1 f.23.32.1 (J:7-40) Pho 7.4 77 0.0056 18.0 1.2 11 54-64 1-11 (34)
5 d1ghha_ d.57.1.1 (A:) DNA dama 7.3 65 0.0047 22.2 1.0 17 318-334 59-75 (81)
6 d1ui5a2 a.121.1.1 (A:80-212) A 6.8 1.8E+02 0.013 21.2 3.6 41 285-332 68-108 (133)
7 d3ehbb2 f.17.2.1 (B:1-107) Bac 6.1 1.5E+02 0.011 20.9 2.6 20 313-332 63-83 (107)
8 d1nqza_ d.113.1.1 (A:) Coenzym 5.9 1.1E+02 0.008 23.7 1.8 28 310-337 69-96 (187)
9 d1pv7a_ f.38.1.2 (A:) Lactose 4.9 6.6E+02 0.048 19.2 9.8 24 301-329 393-416 (417)
10 d1a8la1 c.47.1.2 (A:1-119) Pro 4.8 2.5E+02 0.018 20.1 3.2 29 316-344 35-63 (119)
No 1
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=11.51 E-value=96 Score=17.21 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=17.3
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHhcc
Q 018943 81 QSLLAALGSVQFVSNIAFSYFVFNK 105 (348)
Q Consensus 81 ~slv~Pl~~~~lv~~~~~s~~~l~e 105 (348)
...|+.+.+.+++++.+..++.-+|
T Consensus 9 vvmvagits~glv~aa~atwfvgre 33 (34)
T d2p7tc1 9 VVMVAGITSFGLVTAALATWFVGRE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccchhhhHHHHHHHHhhccc
Confidence 4457777788888887766665444
No 2
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=9.92 E-value=1.8e+02 Score=19.87 Aligned_cols=27 Identities=7% Similarity=0.052 Sum_probs=13.9
Q ss_pred hccccccCChHHHHHHHHHHHHHHHhhhhc
Q 018943 279 YFQEYQVFDALRATMFILGTASVFIGISLL 308 (348)
Q Consensus 279 ~f~E~~~~~~~~~~~~~~G~~vi~~GV~lL 308 (348)
=|+|..+.++. .-.+++..++.|+.+.
T Consensus 56 GYGDi~P~t~~---gr~~~~~~~~~Gi~~~ 82 (103)
T d1r3jc_ 56 GYGDLYPVTLW---GRCVAVVVMVAGITSF 82 (103)
T ss_dssp CCSSSCCCSHH---HHHHHHHHHHHHHHHH
T ss_pred ccCccccCChh---HHHHHHHHHHHHHHHH
Confidence 35676555443 3344445555555544
No 3
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=8.40 E-value=1.7e+02 Score=22.68 Aligned_cols=71 Identities=10% Similarity=0.084 Sum_probs=39.0
Q ss_pred hhhhHHHHHHHHHHHhhhhhccccccCChHHHHHHHHHHHHHHHhhhhcc---C-CCCCCccchhhhHHHHHhhhh
Q 018943 260 IVPMFQIAWTSFSICTGFVYFQEYQVFDALRATMFILGTASVFIGISLLA---P-DESKGILMSSLLRSIISEIWT 331 (348)
Q Consensus 260 vvP~~~v~~~~~si~~G~i~f~E~~~~~~~~~~~~~~G~~vi~~GV~lLs---~-~~~~~~~~~~~~~~~~~~~~~ 331 (348)
.+|...+..........+.+++...+..........+|..+- .++.... | .+++++..++.+++.+.|.+.
T Consensus 67 li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd-~~i~i~~~~~~~~~~~g~~~~eAi~~a~~~~g~ 141 (199)
T d1iwga7 67 LIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVD-DAIVVVENVERVMAEEGLPPKEATRKSMGQIQG 141 (199)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSCCSHHHHHHGGGTHHH
T ss_pred heeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhcCCCHHHHHHHHHhHhhh
Confidence 456666666776777777777754433222333444444432 2233332 2 234566667778888888754
No 4
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.40 E-value=77 Score=18.02 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=7.4
Q ss_pred ccchhHHHHHH
Q 018943 54 HYHSWRVGILV 64 (348)
Q Consensus 54 ~~p~w~~G~~~ 64 (348)
|-|+|++|.+.
T Consensus 1 riPLWlv~tv~ 11 (34)
T d2axtj1 1 RIPLWIVATVA 11 (34)
T ss_dssp CCCHHHHHHHH
T ss_pred CCcEEEeeehh
Confidence 34788887654
No 5
>d1ghha_ d.57.1.1 (A:) DNA damage-inducible protein DinI {Escherichia coli [TaxId: 562]}
Probab=7.32 E-value=65 Score=22.24 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=13.2
Q ss_pred chhhhHHHHHhhhhccc
Q 018943 318 MSSLLRSIISEIWTRTY 334 (348)
Q Consensus 318 ~~~~~~~~~~~~~~~~~ 334 (348)
++..++++++|+|.+..
T Consensus 59 dK~~i~~iLqE~wE~AD 75 (81)
T d1ghha_ 59 DKQRISEILQETWESAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHhChH
Confidence 46679999999997643
No 6
>d1ui5a2 a.121.1.1 (A:80-212) A-factor receptor homolog CprB {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.78 E-value=1.8e+02 Score=21.17 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=24.6
Q ss_pred cCChHHHHHHHHHHHHHHHhhhhccCCCCCCccchhhhHHHHHhhhhc
Q 018943 285 VFDALRATMFILGTASVFIGISLLAPDESKGILMSSLLRSIISEIWTR 332 (348)
Q Consensus 285 ~~~~~~~~~~~~G~~vi~~GV~lLs~~~~~~~~~~~~~~~~~~~~~~~ 332 (348)
+.++-...-++++ .+.|+.++++..+... .+++-++|||..
T Consensus 68 d~dp~~lA~~lva---~~~G~~~lsr~~~~~~----~L~~rl~~~w~l 108 (133)
T d1ui5a2 68 DIDVDSVAHTLVC---SVVGTRVVGGTLEPAG----REPRRLAEMWYI 108 (133)
T ss_dssp TCCHHHHHHHHHH---HHHCTTCC------------CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH---HHHHHHHHHhccCccc----cHHHHHHHHHHH
Confidence 5667777776666 4589999998654432 267789999964
No 7
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=6.11 E-value=1.5e+02 Score=20.89 Aligned_cols=20 Identities=15% Similarity=0.267 Sum_probs=9.2
Q ss_pred CCCccchhhhHHHHHhh-hhc
Q 018943 313 SKGILMSSLLRSIISEI-WTR 332 (348)
Q Consensus 313 ~~~~~~~~~~~~~~~~~-~~~ 332 (348)
++++..+.+++..-=|+ ||-
T Consensus 63 ~~~~~~~~~~~n~~lEi~WTv 83 (107)
T d3ehbb2 63 RANPVPARFTHNTPIEVIWTL 83 (107)
T ss_dssp TTSSSCCCCCCCHHHHHHHHH
T ss_pred cCCccccccccchHHHHHHHH
Confidence 33343344444344444 873
No 8
>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}
Probab=5.88 E-value=1.1e+02 Score=23.72 Aligned_cols=28 Identities=11% Similarity=0.051 Sum_probs=21.5
Q ss_pred CCCCCCccchhhhHHHHHhhhhccccee
Q 018943 310 PDESKGILMSSLLRSIISEIWTRTYSLN 337 (348)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (348)
+.++.+...+..+||+-||++...+.+.
T Consensus 69 ~~e~~E~~~~aAlRE~~EE~Gl~~~~~~ 96 (187)
T d1nqza_ 69 SLDAGETPTQAALREAQEEVALDPAAVT 96 (187)
T ss_dssp ECCTTCCHHHHHHHHHHHHHCCCGGGCE
T ss_pred ccccCCchhHHHHHHHHHhhccccceeE
Confidence 3455567788999999999998766654
No 9
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.89 E-value=6.6e+02 Score=19.18 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=12.3
Q ss_pred HHHhhhhccCCCCCCccchhhhHHHHHhh
Q 018943 301 VFIGISLLAPDESKGILMSSLLRSIISEI 329 (348)
Q Consensus 301 i~~GV~lLs~~~~~~~~~~~~~~~~~~~~ 329 (348)
.+...+.+.+++|. +..|+-++|+
T Consensus 393 ~~~~~~~l~~~~~~-----~~~r~~~~e~ 416 (417)
T d1pv7a_ 393 TLISVFTLSGPGPL-----SLLRRQVNEV 416 (417)
T ss_dssp HHHHHHHSCCSSCT-----THHHHHHHHH
T ss_pred HHHHHHhhcCCCcc-----chhHhhhccC
Confidence 33444444433333 3367777775
No 10
>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=4.81 E-value=2.5e+02 Score=20.06 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=23.5
Q ss_pred ccchhhhHHHHHhhhhcccceeeEEEEee
Q 018943 316 ILMSSLLRSIISEIWTRTYSLNFQVVRLK 344 (348)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (348)
.......++.++|+=..|+++++++....
T Consensus 35 ~~~~~e~~~ll~ela~lSdki~~~~~~~~ 63 (119)
T d1a8la1 35 CQYCDQLKQLVQELSELTDKLSYEIVDFD 63 (119)
T ss_dssp CTTHHHHHHHHHHHHTTCTTEEEEEEETT
T ss_pred chhHHHHHHHHHHHHhhCCCeEEEEeccC
Confidence 34456789999999999999999987643
Done!