BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018944
         (348 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2C2J|A Chain A, Crystal Structure Of The Dps92 From Deinococcus
           Radiodurans
 pdb|2C6R|A Chain A, Fe-Soaked Crystal Structure Of The Dps92 From Deinococcus
           Radiodurans
          Length = 211

 Score = 28.5 bits (62), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 318 LVGFFTYKIATFFQAVEEAVSIVEKKDP 345
           ++ FFTY+  T  Q + + V  VEK DP
Sbjct: 136 VIQFFTYQYETVGQRIHQRVGDVEKVDP 163


>pdb|1ATI|A Chain A, Crystal Structure Of Glycyl-Trna Synthetase From Thermus
           Thermophilus
 pdb|1ATI|B Chain B, Crystal Structure Of Glycyl-Trna Synthetase From Thermus
           Thermophilus
          Length = 505

 Score = 28.5 bits (62), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 11/97 (11%)

Query: 142 LQQPVEAAIQDSQQKSGSVPRKWRLAPTRREQDKWDKATKAATGGSDVMFRELRKPRGDP 201
           L   V+A +Q  ++  G++     L P   E   W           ++MF++LR PRG  
Sbjct: 125 LHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRY-----FNMMFQDLRGPRGGR 179

Query: 202 EVLA------AQSKEQYFKASLKSKLQFLTLGIGGVG 232
            +LA      AQ     FK  L +  + L  GI  +G
Sbjct: 180 GLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIG 216


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,942,737
Number of Sequences: 62578
Number of extensions: 344090
Number of successful extensions: 755
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 9
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)