BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018944
         (348 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P08443|ATPZ_SYNP6 ATP synthase protein I OS=Synechococcus sp. (strain ATCC 27144 /
           PCC 6301 / SAUG 1402/1) GN=atpI PE=3 SV=1
          Length = 118

 Score = 55.8 bits (133), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 15/122 (12%)

Query: 216 SLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKG 275
           +L+ +L  +TL    V   + + +YS   AAS+  G +G L+Y+RMLG  V+ +     G
Sbjct: 6   ALQRQLLQVTLICTVVIFGAVWWAYSLNTAASYLLGAMGGLLYLRMLGKAVERI-----G 60

Query: 276 LMKGAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEE 335
             +   G+ RL + VVL+++  RW           +LEL+P+ +GF TYK A  +  +  
Sbjct: 61  ERRRQFGKSRLALFVVLIVLAARWQ----------YLELMPVFLGFLTYKAALIWYTLRA 110

Query: 336 AV 337
            +
Sbjct: 111 VI 112


>sp|Q05376|ATPZ_SYNP1 ATP synthase protein I OS=Synechococcus sp. (strain PCC 6716)
           GN=atpI PE=3 SV=2
          Length = 115

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 15/103 (14%)

Query: 225 TLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQP 284
           +L +  +   + ++ Y    A ++  G   SL+Y+R+L   V+ +    K L     G+ 
Sbjct: 15  SLVLMAIAFGTVWVIYDLNTALNYLLGASASLIYLRLLARNVERLGHDQKKL-----GKT 69

Query: 285 RLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIA 327
           +LLV V ++++  RW+E          L +IP+ +GF TYK A
Sbjct: 70  QLLVVVAVIILAARWHE----------LHIIPVFLGFLTYKAA 102


>sp|P12403|ATPZ_NOSS1 ATP synthase protein I OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
           GN=atpI PE=3 SV=2
          Length = 122

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 15/120 (12%)

Query: 217 LKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGL 276
           L  +L  +TL + GV  +S +I YS  IA ++  G    +VY+RML   V+ +     G 
Sbjct: 7   LYQELVLITLVLTGVVFISVWIFYSLNIALNYLLGACTGVVYLRMLAKDVERL-----GR 61

Query: 277 MKGAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEA 336
            K ++ + RL + + L+++ +RWN+          L+++P+ +GF TYK       V  A
Sbjct: 62  EKQSLSKTRLALLMALILLASRWNQ----------LQIMPIFLGFLTYKATLIIYVVRVA 111


>sp|P27196|ATPZ_SYNY3 ATP synthase protein I OS=Synechocystis sp. (strain PCC 6803 /
           Kazusa) GN=atpI PE=3 SV=1
          Length = 117

 Score = 37.0 bits (84), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 15/99 (15%)

Query: 240 YSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQPRLLVPVVLVMIYNRW 299
           YS  IA ++  G L  LVY+++L   V+ + A       G  G   L V V L++I  + 
Sbjct: 30  YSLNIALNYLLGALVGLVYLKLLAKDVERIGA-----QSGRAGVKGLAVFVGLIIIATQR 84

Query: 300 NEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEAVS 338
                      +LE++P+ +GF TYK A  F  ++   +
Sbjct: 85  E----------NLEVLPIFLGFLTYKAAIIFYMLQSVFT 113


>sp|Q2VZM9|ATPD_MAGSA ATP synthase subunit delta OS=Magnetospirillum magneticum (strain
           AMB-1 / ATCC 700264) GN=atpH PE=3 SV=1
          Length = 184

 Score = 34.7 bits (78), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 10/81 (12%)

Query: 155 QKSGSVPRKWRLAPTRREQDKWDKATKAATGGSDVMFRELRKPRGDPEVLAA---QSKEQ 211
           +KS +V     L+P   +QD    A KAA GG+  +  ++     DP +L     Q   +
Sbjct: 111 EKSATVASAVALSPA--QQDALTTALKAAFGGNVAVDVKV-----DPSLLGGLVVQVGSR 163

Query: 212 YFKASLKSKLQFLTLGIGGVG 232
              +SLK+KLQ L L + GVG
Sbjct: 164 MVDSSLKTKLQHLKLAMKGVG 184


>sp|Q10341|CYS2_SCHPO Probable serine-O-acetyltransferase cys2 OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=cys2 PE=1 SV=1
          Length = 504

 Score = 33.1 bits (74), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 11/103 (10%)

Query: 37  LPKKKSMKWSTGVAPGEYGGPPTTTKLRKFWGGEKEDPLTSDEFIWNNDFMPRMKRLIED 96
           +P    MK +  VA   Y   P   +  + +G  + DP  S  F    DF      LIE 
Sbjct: 280 VPPHTGMKLAREVATISYRSGP---EWEQRFGNRRADPSVSPAFC--PDF------LIET 328

Query: 97  TDESSAEKFPVQEEPSGFLSLNRVMSLDSLEVDLSKELTADSK 139
             + + EKF +Q +P+  L +++ M +  +     + L+ + K
Sbjct: 329 YLDHAGEKFCLQYDPNSLLYISKAMDMHDMSASHQRSLSENRK 371


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.131    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,516,323
Number of Sequences: 539616
Number of extensions: 5577225
Number of successful extensions: 12945
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 12878
Number of HSP's gapped (non-prelim): 88
length of query: 348
length of database: 191,569,459
effective HSP length: 118
effective length of query: 230
effective length of database: 127,894,771
effective search space: 29415797330
effective search space used: 29415797330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)