Query 018944
Match_columns 348
No_of_seqs 110 out of 118
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 05:23:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018944.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018944hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03899 ATP_synt_I: ATP synth 98.2 1E-05 2.2E-10 63.7 7.9 93 221-322 2-100 (100)
2 PRK05760 F0F1 ATP synthase sub 94.2 0.37 7.9E-06 41.7 8.9 103 221-337 10-118 (124)
3 PF12966 AtpR: N-ATPase, AtpR 94.2 0.14 3E-06 41.8 5.9 78 243-331 2-81 (85)
4 PRK06099 F0F1 ATP synthase sub 90.9 0.92 2E-05 39.8 6.9 87 237-337 30-120 (126)
5 PRK08049 F0F1 ATP synthase sub 86.6 12 0.00025 33.0 10.8 102 217-336 10-120 (124)
6 COG3312 AtpI F0F1-type ATP syn 80.4 20 0.00043 32.0 9.7 107 217-338 11-123 (128)
7 PF14362 DUF4407: Domain of un 73.8 18 0.00038 34.7 8.2 90 207-299 10-100 (301)
8 PF06738 DUF1212: Protein of u 71.5 14 0.00031 32.7 6.6 41 222-262 104-146 (193)
9 PF03030 H_PPase: Inorganic H+ 61.9 29 0.00063 38.3 7.8 58 207-264 30-94 (682)
10 PRK10862 SoxR reducing system 58.5 39 0.00084 30.2 6.8 58 209-269 69-131 (154)
11 PF11712 Vma12: Endoplasmic re 57.0 71 0.0015 27.8 8.1 29 241-269 106-138 (142)
12 PF04246 RseC_MucC: Positive r 55.4 35 0.00076 29.1 5.8 52 217-268 68-123 (135)
13 COG4965 TadB Flp pilus assembl 55.1 45 0.00097 33.6 7.2 41 220-260 83-123 (309)
14 PLN00097 photosystem I light h 54.7 6.5 0.00014 38.1 1.4 22 34-55 45-66 (244)
15 PRK00733 hppA membrane-bound p 52.3 70 0.0015 35.4 8.7 57 208-264 17-79 (666)
16 COG3808 OVP1 Inorganic pyropho 51.2 55 0.0012 35.8 7.5 51 207-257 42-92 (703)
17 PRK08378 hypothetical protein; 48.2 68 0.0015 27.2 6.2 48 217-264 24-76 (93)
18 PF12794 MscS_TM: Mechanosensi 47.9 64 0.0014 32.1 7.1 69 170-249 266-334 (340)
19 PF04148 Erv26: Transmembrane 43.8 1.2E+02 0.0025 29.1 7.8 77 207-298 32-108 (211)
20 PF04418 DUF543: Domain of unk 42.8 61 0.0013 26.3 5.0 50 209-259 19-68 (75)
21 PLN00048 photosystem I light h 41.5 31 0.00067 33.9 3.7 21 35-55 44-64 (262)
22 TIGR01104 V_PPase vacuolar-typ 41.2 1.3E+02 0.0027 33.7 8.6 56 207-263 40-103 (697)
23 COG0109 CyoE Polyprenyltransfe 40.9 2.4E+02 0.0052 28.6 9.8 107 207-324 16-132 (304)
24 PF06166 DUF979: Protein of un 37.4 66 0.0014 32.5 5.3 58 206-265 80-144 (308)
25 TIGR03165 F1F0_chp_2 F1/F0 ATP 36.4 65 0.0014 26.7 4.3 68 243-329 2-79 (83)
26 PF12597 DUF3767: Protein of u 35.7 1.2E+02 0.0026 26.4 6.0 45 220-264 42-92 (118)
27 PF00584 SecE: SecE/Sec61-gamm 34.8 70 0.0015 23.6 3.9 35 218-252 21-55 (57)
28 COG3086 RseC Positive regulato 34.7 1.2E+02 0.0026 27.9 6.0 59 207-269 67-131 (150)
29 PF13244 DUF4040: Domain of un 34.2 1.7E+02 0.0036 23.1 6.2 47 218-264 14-65 (70)
30 PRK09917 hypothetical protein; 32.7 1.9E+02 0.0041 26.1 7.1 91 225-327 16-106 (157)
31 PLN00100 light-harvesting comp 32.1 33 0.00072 33.5 2.3 21 35-55 37-57 (246)
32 COG5415 Predicted integral mem 31.6 2.5E+02 0.0055 27.5 8.0 43 217-260 41-87 (251)
33 PRK07597 secE preprotein trans 31.4 81 0.0018 24.0 3.9 34 218-251 29-62 (64)
34 PF10112 Halogen_Hydrol: 5-bro 31.3 1.1E+02 0.0023 27.8 5.3 33 227-259 16-48 (199)
35 PF07895 DUF1673: Protein of u 31.2 2.2E+02 0.0047 26.7 7.4 26 238-264 151-176 (205)
36 TIGR00964 secE_bact preprotein 30.1 88 0.0019 23.3 3.8 34 218-251 20-53 (55)
37 PF02517 Abi: CAAX protease se 29.6 2.2E+02 0.0047 21.7 6.1 38 223-260 37-74 (91)
38 PLN02277 H(+) -translocating i 29.0 2.6E+02 0.0055 31.6 8.5 56 207-262 32-107 (730)
39 PRK11646 multidrug resistance 26.8 5.1E+02 0.011 25.2 9.4 26 209-236 4-29 (400)
40 COG0344 Predicted membrane pro 26.3 70 0.0015 30.4 3.3 34 244-277 9-44 (200)
41 KOG2890 Predicted membrane pro 25.4 53 0.0012 33.4 2.5 30 240-269 195-224 (326)
42 COG4818 Predicted membrane pro 25.4 66 0.0014 27.9 2.7 20 242-261 5-24 (105)
43 PF07954 DUF1689: Protein of u 25.4 2.7E+02 0.0059 25.4 6.8 56 209-264 23-89 (152)
44 PF06946 Phage_holin_5: Phage 24.6 1.1E+02 0.0024 26.1 3.8 14 245-258 38-51 (93)
45 PF03907 Spo7: Spo7-like prote 24.2 3.4E+02 0.0073 26.2 7.4 33 206-240 15-47 (207)
46 COG2966 Uncharacterized conser 24.0 1.4E+02 0.0031 28.9 5.0 65 191-256 96-162 (250)
47 PLN02975 complex I subunit 23.3 1.3E+02 0.0029 25.7 4.1 42 226-269 35-82 (97)
48 COG0690 SecE Preprotein transl 23.0 1.4E+02 0.0031 23.7 4.0 45 206-250 25-71 (73)
49 PF10947 DUF2628: Protein of u 22.5 2.8E+02 0.006 22.7 5.8 24 241-264 85-108 (108)
50 PF06645 SPC12: Microsomal sig 21.7 2.4E+02 0.0051 22.6 5.1 38 219-256 10-49 (76)
51 PLN00101 Photosystem I light-h 20.4 1.5E+02 0.0032 29.1 4.4 21 35-55 55-75 (250)
No 1
>PF03899 ATP_synt_I: ATP synthase I chain; InterPro: IPR005598 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The atp operon of most prokaryotes contains the structural genes for the F-ATPase (ATP synthase), which are preceded by an atpI gene that encodes a membrane protein of unknown function. A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex []. A role in magnesium uptake has also been suggested []. More information about this protein can be found at Protein of the Month: ATP synthases [].
Probab=98.15 E-value=1e-05 Score=63.68 Aligned_cols=93 Identities=20% Similarity=0.242 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhHhhhhcCHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccc----ccccC--CCCCCCchHHHHHHHH
Q 018944 221 LQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGA----KGLMK--GAVGQPRLLVPVVLVM 294 (348)
Q Consensus 221 Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGa~gGllYLrLL~rsVD~Lg~~~----~g~~k--galgqpRLLVPV~Lvv 294 (348)
+...++.+++++.+.+++.++.+.++|+++|++.+++...++.+.++++.+.. ++..+ ..-.--|+++-+++++
T Consensus 2 i~~~~~~l~~~~~~~~~~~~~~~~~~s~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~R~~l~~~~~~ 81 (100)
T PF03899_consen 2 IVIIQLILLAVLALVFFLFFGWPVALSFLLGGLISLLNFFLLARRVFRLAGALAMDPGRAVRAMYLGYFIRLALTILLFI 81 (100)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999999999999999999999996664211 11111 0012357888888888
Q ss_pred HHHHhhccccCCccCcchhHHHHHHHHH
Q 018944 295 IYNRWNEITVPEYGFLHLELIPMLVGFF 322 (348)
Q Consensus 295 ~a~rwn~i~~p~fg~~~LeLlP~llGFL 322 (348)
+..++.. +++.++.++||+
T Consensus 82 ~~~~~~~---------~~~~~~~~~Gl~ 100 (100)
T PF03899_consen 82 LAFKFPP---------ELNPIALLIGLL 100 (100)
T ss_pred HHHHHHc---------ccHHHHHHHHHC
Confidence 8888833 489999999985
No 2
>PRK05760 F0F1 ATP synthase subunit I; Validated
Probab=94.24 E-value=0.37 Score=41.68 Aligned_cols=103 Identities=14% Similarity=0.114 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhHhhhhcCHHHHHHHHHHHHHHHH----HHHHHHhhHhhhccc--cccccCCCCCCCchHHHHHHHH
Q 018944 221 LQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLV----YIRMLGSTVDSMAAG--AKGLMKGAVGQPRLLVPVVLVM 294 (348)
Q Consensus 221 Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGa~gGll----YLrLL~rsVD~Lg~~--~~g~~kgalgqpRLLVPV~Lvv 294 (348)
++..=++++.++++.+++..+.+.|.|+++|++.+++ |.+.+-|+...=..+ ...-..|...+ +++-+++.+
T Consensus 10 ~l~~Q~~~~l~~a~~~~~~~~~~~a~Sal~Ggl~~~lP~~~Fa~~~fr~~g~~~~~~i~~~fy~GE~~K--~~lTi~lf~ 87 (124)
T PRK05760 10 LLLIQLVVVLVAALVLWVAVGPVWGYSALIGGLIAVLANAYFAHCAFRFSGARAAKAIVRSFYAGEAGK--IIITAVLFA 87 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 4444555666666666777899999999999988765 555554443111000 00001111122 455555555
Q ss_pred HHHHhhccccCCccCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 018944 295 IYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEAV 337 (348)
Q Consensus 295 ~a~rwn~i~~p~fg~~~LeLlP~llGFLTYK~AlLvqa~rdv~ 337 (348)
++-+|-. +++..+.|.||+ .++.++-+-+..
T Consensus 88 l~f~~~~---------~l~~~~lf~gf~---l~l~~~w~aP~~ 118 (124)
T PRK05760 88 LAFAGVQ---------PLLPPLKFGTYL---LVLGVNWFAPLL 118 (124)
T ss_pred HHHHHhc---------hhhHHHHHHHHH---HHHHHHHHHHHH
Confidence 4445422 355555555665 567666665543
No 3
>PF12966 AtpR: N-ATPase, AtpR subunit
Probab=94.20 E-value=0.14 Score=41.81 Aligned_cols=78 Identities=21% Similarity=0.221 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhccccccccCCCCCC--CchHHHHHHHHHHHHhhccccCCccCcchhHHHHHHH
Q 018944 243 EIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQ--PRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVG 320 (348)
Q Consensus 243 ~~AlSyllGa~gGllYLrLL~rsVD~Lg~~~~g~~kgalgq--pRLLVPV~Lvv~a~rwn~i~~p~fg~~~LeLlP~llG 320 (348)
+.+..+++|.+.|.+|..-|-.+|.++..+.... .--.++ .|+.+.++...+.++.+ -..++..++|
T Consensus 2 ~~~~~~~~G~~lG~~yF~gLw~tvr~~~~~~~p~-~~~~~S~l~R~~l~~~~f~~~~~~~----------~~~lL~~l~G 70 (85)
T PF12966_consen 2 QLLLAFLAGLLLGALYFGGLWWTVRRLLASKRPA-LWFLLSFLLRLALVLAGFYLLAQGG----------WWRLLACLLG 70 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcH-HHHHHHHHHHHHHHHHHHHHHHhCC----------HHHHHHHHHH
Confidence 3578899999999999999999999996331110 001122 45555555555554432 2579999999
Q ss_pred HHHHHHHHHHH
Q 018944 321 FFTYKIATFFQ 331 (348)
Q Consensus 321 FLTYK~AlLvq 331 (348)
|++.+..++..
T Consensus 71 F~~aR~i~~r~ 81 (85)
T PF12966_consen 71 FLLARFIVLRR 81 (85)
T ss_pred HHHHHHHHHHH
Confidence 99998877654
No 4
>PRK06099 F0F1 ATP synthase subunit I; Validated
Probab=90.86 E-value=0.92 Score=39.76 Aligned_cols=87 Identities=18% Similarity=0.327 Sum_probs=46.9
Q ss_pred hhhcCHHHHHHHHHHHHHHHH---HHHHHH-hhHhhhccccccccCCCCCCCchHHHHHHHHHHHHhhccccCCccCcch
Q 018944 237 YISYSPEIAASFAAGLLGSLV---YIRMLG-STVDSMAAGAKGLMKGAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHL 312 (348)
Q Consensus 237 ~l~yS~~~AlSyllGa~gGll---YLrLL~-rsVD~Lg~~~~g~~kgalgqpRLLVPV~Lvv~a~rwn~i~~p~fg~~~L 312 (348)
+...+.+.|+|+++|++.+++ |.-++. ++-.+-..-.+.-.+|-.++ +++-+++++++=.|=. ++
T Consensus 30 ~~~~~~~~a~Sal~Ggli~~LPn~~Fa~~aF~~~~~~~~~~~sFy~GE~~K--~ilTivlf~laf~~~~---------~~ 98 (126)
T PRK06099 30 LLIWQGQSAVSFLLGFLSAFLPFCLFVYWIFFRKQKNSSKLTAFYRGEAIK--FILTIVLIVIAFKLLP---------VL 98 (126)
T ss_pred HHHhhHHHHHHHHHhhHHHHHhHHHHHHHHHHhccchHHHHHHHHHHhHHH--HHHHHHHHHHHHHHhh---------hh
Confidence 345799999999999998864 443443 22111100000001121222 4444444444434321 37
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Q 018944 313 ELIPMLVGFFTYKIATFFQAVEEAV 337 (348)
Q Consensus 313 eLlP~llGFLTYK~AlLvqa~rdv~ 337 (348)
+.+|.++||+. +++++-+-+..
T Consensus 99 ~~~~lf~~y~l---~l~~~~~aP~~ 120 (126)
T PRK06099 99 HFIAFFVGFFI---ALVLNNLIPFI 120 (126)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHH
Confidence 89999888874 66666655543
No 5
>PRK08049 F0F1 ATP synthase subunit I; Validated
Probab=86.61 E-value=12 Score=32.97 Aligned_cols=102 Identities=18% Similarity=0.170 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhcCHHHHHHHHHHHHHHHH---HHHHHH-hhHhhhccccccc-----cCCCCCCCchH
Q 018944 217 LKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLV---YIRMLG-STVDSMAAGAKGL-----MKGAVGQPRLL 287 (348)
Q Consensus 217 LK~~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGa~gGll---YLrLL~-rsVD~Lg~~~~g~-----~kgalgqpRLL 287 (348)
|-+++++.=+++..+.++ +|...+.+.|.|.++|++..++ |.-+.. |+-.. ...++. ..|-.. .++
T Consensus 10 la~klll~Q~~~~~~~s~-~~~~~~~~~~~Sal~Ggl~~~lPn~~Fa~~afr~~~~--~~a~~~v~~sFy~GE~l--K~~ 84 (124)
T PRK08049 10 VARKLLLLQLLTFVASGA-LFSLKDPFWGVSALAGGLAAWLPNVLFMIFAWRHQAH--TPAKGRVAWSFAFGEAL--KVL 84 (124)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHcCHHHHHHHHHhhHHHHHhHHHHHHHHHHhccc--cchHHHHHHHHHHHHHH--HHH
Confidence 334455554444444443 4566799999999999998864 222111 22100 001000 011111 255
Q ss_pred HHHHHHHHHHHhhccccCCccCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 018944 288 VPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEA 336 (348)
Q Consensus 288 VPV~Lvv~a~rwn~i~~p~fg~~~LeLlP~llGFLTYK~AlLvqa~rdv 336 (348)
+-+++++++-+|=. .+.+|.++||+. ++.+|-+-+.
T Consensus 85 lTi~lf~~af~~~~----------~~~~plf~ty~l---~L~~~~~aP~ 120 (124)
T PRK08049 85 ATIALLVVALGVFK----------AVFLPLGLTWLS---VLVVQILAPA 120 (124)
T ss_pred HHHHHHHHHHHHHh----------HHHHHHHHHHHH---HHHHHHHHHH
Confidence 56666666666532 357888888874 6666665544
No 6
>COG3312 AtpI F0F1-type ATP synthase, subunit I [Energy production and conversion]
Probab=80.43 E-value=20 Score=32.05 Aligned_cols=107 Identities=19% Similarity=0.278 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhcCHHHHHHHHHHHHHHHH----HHHHHHhhHhhh-ccccc-cccCCCCCCCchHHHH
Q 018944 217 LKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLV----YIRMLGSTVDSM-AAGAK-GLMKGAVGQPRLLVPV 290 (348)
Q Consensus 217 LK~~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGa~gGll----YLrLL~rsVD~L-g~~~~-g~~kgalgqpRLLVPV 290 (348)
.+|+|++.-++...+.. .++..++++.++|++.|+.+-++ +....-+.-.+- ..+.- .-..|-.. +=++-.+
T Consensus 11 ~ar~lLliql~~~ivaa-~~f~v~~~~~~vSal~Ggla~~LP~~~F~~~af~f~~~~f~~~~~~sFy~GEal-KvilTiv 88 (128)
T COG3312 11 VARKLLLIQLLVVIVAA-LLFAVWQPQWGVSALLGGLAAFLPNCLFVLFAFRFRGQTFAKGRVASFYFGEAL-KVILTLV 88 (128)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHhccHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHhHHH-HHHHHHH
Confidence 55667777666555444 34555679999999999887643 222222211110 00000 00000001 1133344
Q ss_pred HHHHHHHHhhccccCCccCcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018944 291 VLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTYKIATFFQAVEEAVS 338 (348)
Q Consensus 291 ~Lvv~a~rwn~i~~p~fg~~~LeLlP~llGFLTYK~AlLvqa~rdv~~ 338 (348)
.+++++.-|+. ..++|.++|+|. ++.++-.-+...
T Consensus 89 l~~vAf~~~~~----------~~fipl~vgyLl---~lvln~laPl~i 123 (128)
T COG3312 89 LLVVAFAVLKA----------VLFIPLFVGYLL---VLVLNILAPLVI 123 (128)
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 55555666665 448899988875 555555555443
No 7
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=73.78 E-value=18 Score=34.72 Aligned_cols=90 Identities=19% Similarity=0.289 Sum_probs=47.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCHHHHHHHHHHHHHHHHHHHHHHhhH-hhhccccccccCCCCCCCc
Q 018944 207 QSKEQYFKASLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTV-DSMAAGAKGLMKGAVGQPR 285 (348)
Q Consensus 207 esm~EY~~~~LK~~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGa~gGllYLrLL~rsV-D~Lg~~~~g~~kgalgqpR 285 (348)
.+...|.. +=--++++.+..++.++..++..++.....+.++|.+-|++.+-+ .|.+ -++........+....-+|
T Consensus 10 ~er~k~~~--~G~~vl~ta~la~~s~~~a~~~~~~~~~~~ai~~glvwgl~I~~l-DR~ivss~~~~~~~~~~~~~~~~R 86 (301)
T PF14362_consen 10 AERNKYAG--IGAAVLFTALLAGLSGGYALYTVFGGPVWAAIPFGLVWGLVIFNL-DRFIVSSIRKSDGSRKRLLQALPR 86 (301)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH-HHHHHhccccccchHHHHHHHHHH
Confidence 44556666 444444444444444444445556666688888888888876643 2222 2221110000000123567
Q ss_pred hHHHHHHHHHHHHh
Q 018944 286 LLVPVVLVMIYNRW 299 (348)
Q Consensus 286 LLVPV~Lvv~a~rw 299 (348)
+++-+++.++.+..
T Consensus 87 ~~lAvliaivIs~p 100 (301)
T PF14362_consen 87 LLLAVLIAIVISEP 100 (301)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776664
No 8
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=71.46 E-value=14 Score=32.72 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhHhhhhcC--HHHHHHHHHHHHHHHHHHHHH
Q 018944 222 QFLTLGIGGVGLVSAYISYS--PEIAASFAAGLLGSLVYIRML 262 (348)
Q Consensus 222 ll~Tl~ig~vg~~~~~l~yS--~~~AlSyllGa~gGllYLrLL 262 (348)
....++.+..+++.+.++.+ .+..+++++|++++++...+-
T Consensus 104 ~~~~l~~~l~~~~fa~lfgg~~~~~~~a~i~g~~~~~~~~~~~ 146 (193)
T PF06738_consen 104 WLVILAAGLASAAFALLFGGSWIDMIVAFILGLLVGLLRQLLS 146 (193)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555666544 788889999998888776643
No 9
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=61.94 E-value=29 Score=38.29 Aligned_cols=58 Identities=22% Similarity=0.152 Sum_probs=40.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-----cCHHHHHHHHHHHHHHHH--HHHHHHh
Q 018944 207 QSKEQYFKASLKSKLQFLTLGIGGVGLVSAYIS-----YSPEIAASFAAGLLGSLV--YIRMLGS 264 (348)
Q Consensus 207 esm~EY~~~~LK~~Lll~Tl~ig~vg~~~~~l~-----yS~~~AlSyllGa~gGll--YLrLL~r 264 (348)
+..+|=+.+-|||+.......+.+++.+..++. .+.-.+++|++|++.|.+ |+-|.-.
T Consensus 30 ~~I~eGA~aFL~reYk~i~~~~vi~~~ll~~~~~~~~~~~~~taiaFliGa~~S~laGyiGM~vA 94 (682)
T PF03030_consen 30 AAIQEGAMAFLKREYKTIAIFIVIVAILLFFLLGFLGGQGWWTAIAFLIGALCSALAGYIGMRVA 94 (682)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677777788887776666665555444433 278999999999998865 7777654
No 10
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=58.46 E-value=39 Score=30.23 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHhHhhhhcCHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 018944 209 KEQYFKASLKSKLQFLT-----LGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSM 269 (348)
Q Consensus 209 m~EY~~~~LK~~Lll~T-----l~ig~vg~~~~~l~yS~~~AlSyllGa~gGllYLrLL~rsVD~L 269 (348)
+.|-.= ||-.++.|- +.+|++.. +.++....-++++.++|.+.||+++|++.+....-
T Consensus 69 i~e~~l--lkaa~lvYllPLl~li~ga~l~-~~~~~~e~~~~~~~~~g~~~g~~~~r~~~~~~~~~ 131 (154)
T PRK10862 69 IAEGSL--LRSALLVYMTPLVGLFLGAALF-QLLFGSDLAALCGALLGGVGGFLLARGLSRKLAAR 131 (154)
T ss_pred cchhhH--HHHHHHHHHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 444444 666666553 33333322 33333345556677889999999999999887753
No 11
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=56.98 E-value=71 Score=27.82 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHHHH----HHHHHHhhHhhh
Q 018944 241 SPEIAASFAAGLLGSLV----YIRMLGSTVDSM 269 (348)
Q Consensus 241 S~~~AlSyllGa~gGll----YLrLL~rsVD~L 269 (348)
+.+.+.-.++|.++|++ =+-++.++...+
T Consensus 106 ~~~~~~Rvllgl~~al~vlvAEv~l~~~y~~k~ 138 (142)
T PF11712_consen 106 GWSFPYRVLLGLFGALLVLVAEVVLYIRYLRKV 138 (142)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555555555555543 334455554444
No 12
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=55.44 E-value=35 Score=29.08 Aligned_cols=52 Identities=15% Similarity=0.054 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHH----HHhHhhhhcCHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 018944 217 LKSKLQFLTLGIGGV----GLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDS 268 (348)
Q Consensus 217 LK~~Lll~Tl~ig~v----g~~~~~l~yS~~~AlSyllGa~gGllYLrLL~rsVD~ 268 (348)
+|..++.+-+=+.++ ..++.+.....-.++..++|.+.|++++|++.|...+
T Consensus 68 ~~aa~l~Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~~~~~~~ 123 (135)
T PF04246_consen 68 LKAAFLVYLLPLLALIAGAVLGSYLGGSELWAILGGLLGLALGFLILRLFDRRLKK 123 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 566666654332222 2222332335566777788888888888888887665
No 13
>COG4965 TadB Flp pilus assembly protein TadB [Intracellular trafficking and secretion]
Probab=55.08 E-value=45 Score=33.60 Aligned_cols=41 Identities=20% Similarity=0.129 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhHhhhhcCHHHHHHHHHHHHHHHHHHH
Q 018944 220 KLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIR 260 (348)
Q Consensus 220 ~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGa~gGllYLr 260 (348)
+++..+++.+.+.++..|+..++.+++.+++|+++...|++
T Consensus 83 ~~~~l~~~~~l~~~~v~~~~~~l~v~~~~~~~~~llp~~~~ 123 (309)
T COG4965 83 RLILLSAGAGLAVALVAWLGLSLLVALVALIGAALLPRLVL 123 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888788999999999999999998887765
No 14
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=54.72 E-value=6.5 Score=38.14 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.5
Q ss_pred ccccCCcCccccccCCCCCCCC
Q 018944 34 KILLPKKKSMKWSTGVAPGEYG 55 (348)
Q Consensus 34 ~~~~p~kk~~~ws~g~~pg~yg 55 (348)
...+|..+|-.|=+|.-|||||
T Consensus 45 ~~w~Pg~~~P~~LdG~~pGD~G 66 (244)
T PLN00097 45 PTWLPGKAAAAHLDGSLPCDYG 66 (244)
T ss_pred cccCCCCCCccccCCCCCCCCC
Confidence 3567988999999999999998
No 15
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=52.26 E-value=70 Score=35.40 Aligned_cols=57 Identities=19% Similarity=0.071 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhH----hhhhcCHHHHHHHHHHHHHHHH--HHHHHHh
Q 018944 208 SKEQYFKASLKSKLQFLTLGIGGVGLVS----AYISYSPEIAASFAAGLLGSLV--YIRMLGS 264 (348)
Q Consensus 208 sm~EY~~~~LK~~Lll~Tl~ig~vg~~~----~~l~yS~~~AlSyllGa~gGll--YLrLL~r 264 (348)
..+|=+.+-|||+..........++.+. .++..+.-++++|++|+++|.+ |+-|.-.
T Consensus 17 ~I~eGA~afl~rqyk~i~~~~i~~~~~l~~~~~~~~~~~~~~~~Fl~Ga~~S~laG~iGM~ia 79 (666)
T PRK00733 17 AIQEGAMAYLKRQYKTIAIFGVVVAVLLFLPAGGLFLGWLTAVAFLVGAVFSALAGYIGMRVA 79 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556676655554444443332 1345677899999999998875 6666544
No 16
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=51.23 E-value=55 Score=35.80 Aligned_cols=51 Identities=18% Similarity=0.026 Sum_probs=36.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCHHHHHHHHHHHHHHHH
Q 018944 207 QSKEQYFKASLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLV 257 (348)
Q Consensus 207 esm~EY~~~~LK~~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGa~gGll 257 (348)
...+|=+++-|.|+-.....+...+.++.+|+..+.++|+.|++|++.|-+
T Consensus 42 ~aIreGA~ayL~rqy~tiavv~ivva~ll~~~l~~~~ta~~Fl~GAv~S~~ 92 (703)
T COG3808 42 AAIREGAMAYLARQYKTIAVVGIVVAILLAWFLLSWLTAIGFLLGAVLSAA 92 (703)
T ss_pred HHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Confidence 445555666677766555555556677778888889999999999987643
No 17
>PRK08378 hypothetical protein; Provisional
Probab=48.15 E-value=68 Score=27.16 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhh---cCHHHHHHHHH--HHHHHHHHHHHHHh
Q 018944 217 LKSKLQFLTLGIGGVGLVSAYIS---YSPEIAASFAA--GLLGSLVYIRMLGS 264 (348)
Q Consensus 217 LK~~Lll~Tl~ig~vg~~~~~l~---yS~~~AlSyll--Ga~gGllYLrLL~r 264 (348)
..+.|+......++.+++++.++ ..+++|+..+. .++.+.+||.-|.+
T Consensus 24 ~~rdLl~avi~~~~~sll~al~~~~L~APDVAltEAAVGAGlst~l~l~al~~ 76 (93)
T PRK08378 24 EWRDLLAAAVGMAAVSLFASLEFFMLQAPDVAMAEAAIGAALSTAVVIFAIKR 76 (93)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44566666666776666666555 35999999887 57788888888865
No 18
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=47.86 E-value=64 Score=32.06 Aligned_cols=69 Identities=17% Similarity=0.078 Sum_probs=34.4
Q ss_pred hHHHHHHHHhhhhccCCCcchhccccCCCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCHHHHHHHH
Q 018944 170 RREQDKWDKATKAATGGSDVMFRELRKPRGDPEVLAAQSKEQYFKASLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFA 249 (348)
Q Consensus 170 r~Eq~~w~ra~ka~t~gs~v~~re~~~~~~Dpe~~aeesm~EY~~~~LK~~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyl 249 (348)
|||+...+|+.+-...+.+....+.+.+..|-+...++++ +|+...+.++++ .+..|+..+.-.|+||+
T Consensus 266 kR~~~~aqr~~~e~~~~~e~~~~~~ee~~ldl~~I~~Qsl----------rL~~~~l~~~~~-~~l~~iWsdll~a~s~L 334 (340)
T PF12794_consen 266 KRAEALAQREAEEEESSEEGGAEEVEEPELDLEQISQQSL----------RLLRSILLLILL-VGLYWIWSDLLPAFSYL 334 (340)
T ss_pred HHHHHHHhhhcccccCCccccCCCcCCcccCHHHHHHHHH----------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 4666666666222222333233344555555555443332 233333333333 33456667888899886
No 19
>PF04148 Erv26: Transmembrane adaptor Erv26; InterPro: IPR007277 Erv26 is an integral membrane protein that is packed into COPII vesicles and cycles between the ER and Golgi compartments. It directs pro-alkaline phosphatase into endoplasmic reticulum-derived COPII transport vesicles [].
Probab=43.81 E-value=1.2e+02 Score=29.13 Aligned_cols=77 Identities=19% Similarity=0.142 Sum_probs=54.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccccCCCCCCCch
Q 018944 207 QSKEQYFKASLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQPRL 286 (348)
Q Consensus 207 esm~EY~~~~LK~~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGa~gGllYLrLL~rsVD~Lg~~~~g~~kgalgqpRL 286 (348)
|--|||-. +-++.+..++....+.-+..+++-+...- .-++|.+.-++|+++| |.-=-+ .+.+|.+
T Consensus 32 ElVEEht~--~akril~~~I~~ii~~~vlL~~~D~~P~~-~~l~si~s~~~Y~~~L-~~fP~i----------~ltsp~F 97 (211)
T PF04148_consen 32 ELVEEHTV--LAKRILKRLIYFIIALHVLLLLFDGFPFW-LTLFSIFSHLVYLRNL-RTFPFI----------SLTSPSF 97 (211)
T ss_pred HHHHHhHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHh-CCCCee----------ecCCHHH
Confidence 55789999 88888888877777777666666554443 5568999999999999 433333 1567778
Q ss_pred HHHHHHHHHHHH
Q 018944 287 LVPVVLVMIYNR 298 (348)
Q Consensus 287 LVPV~Lvv~a~r 298 (348)
+.-++++ +.+.
T Consensus 98 i~S~~lv-i~nH 108 (211)
T PF04148_consen 98 ILSCVLV-ILNH 108 (211)
T ss_pred HHHHHHH-HHHH
Confidence 7777765 4444
No 20
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=42.80 E-value=61 Score=26.30 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCHHHHHHHHHHHHHHHHHH
Q 018944 209 KEQYFKASLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYI 259 (348)
Q Consensus 209 m~EY~~~~LK~~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGa~gGllYL 259 (348)
.+.+++ -|-.-|...++++++-++.+.+++-+.-..+.+.+|.-.|.+|-
T Consensus 19 ~~kwD~-cl~~~l~k~~~G~~~G~~~s~l~frrR~~pv~lG~G~G~G~aY~ 68 (75)
T PF04418_consen 19 GEKWDR-CLSDTLVKTGLGFGIGVVFSLLFFRRRAWPVALGAGFGIGMAYS 68 (75)
T ss_pred HHHHHH-HHHHHHHHHhhhhhHHHHHHHHHHccchHHHHhhcccccchhHH
Confidence 344444 35566777777777777777777778777778888888888884
No 21
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=41.50 E-value=31 Score=33.87 Aligned_cols=21 Identities=29% Similarity=0.798 Sum_probs=19.0
Q ss_pred cccCCcCccccccCCCCCCCC
Q 018944 35 ILLPKKKSMKWSTGVAPGEYG 55 (348)
Q Consensus 35 ~~~p~kk~~~ws~g~~pg~yg 55 (348)
..+|..++-.|-+|.-|||||
T Consensus 44 ~w~p~~~~P~yLdG~lPGD~G 64 (262)
T PLN00048 44 LWFASKQSLSYLDGTLPGDFG 64 (262)
T ss_pred eecCCCCCccccCCCCCCccC
Confidence 456999999999999999998
No 22
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=41.19 E-value=1.3e+02 Score=33.67 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=34.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCH------HHHHHHHHHHHHHHH--HHHHHH
Q 018944 207 QSKEQYFKASLKSKLQFLTLGIGGVGLVSAYISYSP------EIAASFAAGLLGSLV--YIRMLG 263 (348)
Q Consensus 207 esm~EY~~~~LK~~Lll~Tl~ig~vg~~~~~l~yS~------~~AlSyllGa~gGll--YLrLL~ 263 (348)
+..+|=+++-|||+.......+..++.+. +++++. .++++|++|+++|.+ |+-|--
T Consensus 40 ~~I~eGA~afL~rqyk~i~~~~vi~~v~l-~~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iGM~i 103 (697)
T TIGR01104 40 QAISEGATAFLFTEYKYVAVFMVAFAVLI-FVFLGSREGFSDFSTVAFLLGAVTSLLAGYLGMKI 103 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccccchhHHHHHHHHHHHHHHHHHHhhhHH
Confidence 44555566667777766655554444333 223332 799999999998865 555543
No 23
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=40.86 E-value=2.4e+02 Score=28.56 Aligned_cols=107 Identities=16% Similarity=0.172 Sum_probs=62.3
Q ss_pred HhHHHHHHHHHHH----HHHHHHHHHHHHHHhHhhhhcCHH----HHHHHHHHHHHHHHHHHHHHhhHhhh-ccc-cccc
Q 018944 207 QSKEQYFKASLKS----KLQFLTLGIGGVGLVSAYISYSPE----IAASFAAGLLGSLVYIRMLGSTVDSM-AAG-AKGL 276 (348)
Q Consensus 207 esm~EY~~~~LK~----~Lll~Tl~ig~vg~~~~~l~yS~~----~AlSyllGa~gGllYLrLL~rsVD~L-g~~-~~g~ 276 (348)
...++|-+ |=. .|+..|...|.+.... ...++. +.++-.+|+.++++.=-...|+.|.+ .+. .+..
T Consensus 16 ~~~k~yl~--LtKPrvi~L~~it~~~g~~lA~~--~~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~ 91 (304)
T COG0109 16 STIKDYLQ--LTKPRVISLLLITAFAGMLLAPR--GSINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPL 91 (304)
T ss_pred HHHHHHHH--HhCCeeeehHHHHHHHHHHHccc--ccccHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCC
Confidence 44678877 533 4455555555443332 223333 44555788889999999999999999 443 3445
Q ss_pred cCCCCCCCchHHHHHHHHHHHHhhccccCCccCcchhHHHHHHHHHHH
Q 018944 277 MKGAVGQPRLLVPVVLVMIYNRWNEITVPEYGFLHLELIPMLVGFFTY 324 (348)
Q Consensus 277 ~kgalgqpRLLVPV~Lvv~a~rwn~i~~p~fg~~~LeLlP~llGFLTY 324 (348)
.+|.+....-+....+..+++-.-. . +-...+++++|+++.
T Consensus 92 ~~G~i~p~~al~fgl~L~~~g~~~l------~-~~vn~laa~l~~~gi 132 (304)
T COG0109 92 VTGLISPREALAFGLVLGVAGFSLL------W-FLVNLLAAVLGLFGI 132 (304)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHH------H-HHHHHHHHHHHHHHH
Confidence 5676666555555444444443211 0 024567777776663
No 24
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=37.40 E-value=66 Score=32.54 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=47.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCH-------HHHHHHHHHHHHHHHHHHHHHhh
Q 018944 206 AQSKEQYFKASLKSKLQFLTLGIGGVGLVSAYISYSP-------EIAASFAAGLLGSLVYIRMLGST 265 (348)
Q Consensus 206 eesm~EY~~~~LK~~Lll~Tl~ig~vg~~~~~l~yS~-------~~AlSyllGa~gGllYLrLL~rs 265 (348)
|+..++.++ ++.+|+.-.+.+..+.++.+.++-.. ...++..+|++.+++....+.|.
T Consensus 80 e~r~~~a~r--lGnklFiPal~i~v~a~~~a~~~~~l~l~d~~~~tlv~lgig~i~Ali~a~~itk~ 144 (308)
T PF06166_consen 80 EEREASAKR--LGNKLFIPALLIPVVAVIGAQLFTKLPLLDPKNGTLVGLGIGAIVALIVALIITKP 144 (308)
T ss_pred HHHHHHHHH--hcCeehHHHHHHHHHHHHHHHHhccccccCCCcchHHHHHHHHHHHHHHHHHHhCC
Confidence 455667778 99999999999999988888866665 67888999999999888877654
No 25
>TIGR03165 F1F0_chp_2 F1/F0 ATPase, Methanosarcina type, subunit 2. Members of this protein family are uncharacterized, highly hydrophobic proteins encoded in the middle of apparent F1/F0 ATPase operons. We note, however, that this protein is both broadly and sparsely distributed. It is found in about only about two percent of microbial genomes sequenced, with the first ten examples found coming from the Euryarchaeota, Chlorobia, Betaproteobacteria, Deltaproteobacteria, and Planctomycetes. In most of these species, surrounding operon appears to represent a second F1/F0 ATPase system, and the member proteins belong to subfamilies with the same phylogenetic distribution as the current protein family.
Probab=36.42 E-value=65 Score=26.68 Aligned_cols=68 Identities=28% Similarity=0.378 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhccccccccCCCCCCCchHHH--------HHHHHHH--HHhhccccCCccCcch
Q 018944 243 EIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQPRLLVP--------VVLVMIY--NRWNEITVPEYGFLHL 312 (348)
Q Consensus 243 ~~AlSyllGa~gGllYLrLL~rsVD~Lg~~~~g~~kgalgqpRLLVP--------V~Lvv~a--~rwn~i~~p~fg~~~L 312 (348)
+.+..+++|.+.|.+|..-|--.|-.+..+ .+|.+++. +++..++ +..+ -.
T Consensus 2 ~~~~~l~~G~~lG~~~F~gLw~tvr~~~~~---------~~Pa~l~~~S~llR~a~~l~gf~~la~~g----------~~ 62 (83)
T TIGR03165 2 TLLLALLAGFLLGAFFFGGLWWTVRKGLAS---------RRPALLFLGSLLLRTALVLAGFYFLARGG----------WR 62 (83)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------cCcHHHHHHHHHHHHHHHHHHHHHHHcCC----------HH
Confidence 356789999999999999999999998632 23333332 1111111 1111 24
Q ss_pred hHHHHHHHHHHHHHHHH
Q 018944 313 ELIPMLVGFFTYKIATF 329 (348)
Q Consensus 313 eLlP~llGFLTYK~AlL 329 (348)
-++..++||+.-+..++
T Consensus 63 ~lL~~~~GF~~aR~~~~ 79 (83)
T TIGR03165 63 RLLAALLGFFAARVLAV 79 (83)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 58888999998776654
No 26
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=35.66 E-value=1.2e+02 Score=26.38 Aligned_cols=45 Identities=24% Similarity=0.121 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhHhhhhcC-----HHHH-HHHHHHHHHHHHHHHHHHh
Q 018944 220 KLQFLTLGIGGVGLVSAYISYS-----PEIA-ASFAAGLLGSLVYIRMLGS 264 (348)
Q Consensus 220 ~Lll~Tl~ig~vg~~~~~l~yS-----~~~A-lSyllGa~gGllYLrLL~r 264 (348)
+=+++.++.|+++.+..|++.+ .|.| .+|++|+++++-|-|...+
T Consensus 42 ~slL~Gi~~G~~vG~~~fl~~~~~~~A~nwavgsF~l~s~~~we~Cr~~r~ 92 (118)
T PF12597_consen 42 DSLLYGIAGGFGVGGLRFLFTSNPRKAANWAVGSFFLGSLGSWEYCRYNRR 92 (118)
T ss_pred HHHHHHHHHHHHHHhhhhcccCCCccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555666554 3433 4788889999999887643
No 27
>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.
Probab=34.80 E-value=70 Score=23.60 Aligned_cols=35 Identities=11% Similarity=0.071 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhcCHHHHHHHHHHH
Q 018944 218 KSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGL 252 (348)
Q Consensus 218 K~~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGa 252 (348)
|++++.+|..+..+..+...+++..+..+++++..
T Consensus 21 ~~e~~~~t~~Vl~~~~i~~~~~~~vD~~~~~~~~~ 55 (57)
T PF00584_consen 21 RKELLKSTIIVLVFVIIFGLFFFLVDLIFSWLLNL 55 (57)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777788887777777777778888888777654
No 28
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=34.67 E-value=1.2e+02 Score=27.92 Aligned_cols=59 Identities=19% Similarity=0.100 Sum_probs=40.5
Q ss_pred HhHHHHHHHHHHHHHHHH-----HHHHHHHHHhHhhhh-cCHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 018944 207 QSKEQYFKASLKSKLQFL-----TLGIGGVGLVSAYIS-YSPEIAASFAAGLLGSLVYIRMLGSTVDSM 269 (348)
Q Consensus 207 esm~EY~~~~LK~~Lll~-----Tl~ig~vg~~~~~l~-yS~~~AlSyllGa~gGllYLrLL~rsVD~L 269 (348)
-+..||.= ||..++.| ++.++++.+- +++ ...-+++..++|.+.||+-+|-..|....-
T Consensus 67 iGi~Eksl--L~sA~LvYi~PL~~l~v~~~La~--~L~~~e~~~~~~~~lg~~l~fl~~r~ysRkl~~~ 131 (150)
T COG3086 67 LGIEEKSL--LKSALLVYIFPLVGLFLGAILAQ--YLFFSELIVIFGAFLGLALGFLLARRYSRKLAKR 131 (150)
T ss_pred EccCcccH--HHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45667777 88877766 3444444433 333 347778888999999999888888876654
No 29
>PF13244 DUF4040: Domain of unknown function (DUF4040)
Probab=34.16 E-value=1.7e+02 Score=23.09 Aligned_cols=47 Identities=19% Similarity=0.359 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhhh--c-CHHHHHHH-HHHH-HHHHHHHHHHHh
Q 018944 218 KSKLQFLTLGIGGVGLVSAYIS--Y-SPEIAASF-AAGL-LGSLVYIRMLGS 264 (348)
Q Consensus 218 K~~Lll~Tl~ig~vg~~~~~l~--y-S~~~AlSy-llGa-~gGllYLrLL~r 264 (348)
.++++..-+.+|.+|+..+.++ + -|+.|+.. ++|+ +..++|+.-|.|
T Consensus 14 ~~~~l~avi~~~~~g~~~al~f~~l~APDVAlTe~~Vg~gl~~~l~~~al~~ 65 (70)
T PF13244_consen 14 SRSRLAAVIALGVFGFLIALLFVLLGAPDVALTEAAVGTGLTTVLFLLALRK 65 (70)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455555555665555544443 3 48888875 5788 888888877765
No 30
>PRK09917 hypothetical protein; Provisional
Probab=32.68 E-value=1.9e+02 Score=26.07 Aligned_cols=91 Identities=16% Similarity=0.213 Sum_probs=47.0
Q ss_pred HHHHHHHHHhHhhhhcCHHHHHHHHHHHHHHHHHHHHHHhhHhhhccccccccCCCCCCCchHHHHHHHHHHHHhhcccc
Q 018944 225 TLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAGAKGLMKGAVGQPRLLVPVVLVMIYNRWNEITV 304 (348)
Q Consensus 225 Tl~ig~vg~~~~~l~yS~~~AlSyllGa~gGllYLrLL~rsVD~Lg~~~~g~~kgalgqpRLLVPV~Lvv~a~rwn~i~~ 304 (348)
...+++++|...+=.---..-.+-+.|++|=++|+.++.-.++..-.. .++ -+ +--++..+.+||.. .
T Consensus 16 ~a~ia~~gFailfn~P~r~l~~~~i~G~vgw~vy~~~~~~~~~~~~as-------fia--a~-~igl~s~~~Ar~~k--~ 83 (157)
T PRK09917 16 LAAIPAVGFAMVFNVPVRALRWCALLGAIGHGSRMLMMTSGLNIEWST-------FMA--SM-LVGTIGIQWSRWYL--A 83 (157)
T ss_pred HHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH-------HHH--HH-HHHHHHHHHHHHhC--C
Confidence 344445555544433445566677788888899996653223222100 000 01 11223334456644 4
Q ss_pred CCccCcchhHHHHHHHHHHHHHH
Q 018944 305 PEYGFLHLELIPMLVGFFTYKIA 327 (348)
Q Consensus 305 p~fg~~~LeLlP~llGFLTYK~A 327 (348)
|---|.=--++|++=|...|+.-
T Consensus 84 P~tvf~ip~iiPLVPG~~~Y~~m 106 (157)
T PRK09917 84 HPKVFTVAAVIPMFPGISAYTAM 106 (157)
T ss_pred CCEEeeHhhHHhcCCCHHHHHHH
Confidence 42222225678888888888854
No 31
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=32.07 E-value=33 Score=33.48 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=17.4
Q ss_pred cccCCcCccccccCCCCCCCC
Q 018944 35 ILLPKKKSMKWSTGVAPGEYG 55 (348)
Q Consensus 35 ~~~p~kk~~~ws~g~~pg~yg 55 (348)
..+|--++-.|=+|.-||+||
T Consensus 37 ~W~P~~~~P~~Ldg~~pGd~G 57 (246)
T PLN00100 37 MWYPGATAPKYLDGTMAGDYG 57 (246)
T ss_pred ccCCCCCCCCCCCCCCCCCcC
Confidence 456877777889999999997
No 32
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=31.59 E-value=2.5e+02 Score=27.53 Aligned_cols=43 Identities=28% Similarity=0.471 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhh---hcCHHH-HHHHHHHHHHHHHHHH
Q 018944 217 LKSKLQFLTLGIGGVGLVSAYI---SYSPEI-AASFAAGLLGSLVYIR 260 (348)
Q Consensus 217 LK~~Lll~Tl~ig~vg~~~~~l---~yS~~~-AlSyllGa~gGllYLr 260 (348)
++.++...++.+.+++..+.|+ .|++.. -..|++| .+++.-.|
T Consensus 41 ~~~r~tv~slAl~~l~~S~iy~~~~~y~~~~~It~~llg-s~slymfr 87 (251)
T COG5415 41 WQSRLTVYSLALTVLALSYIYWEYHGYRPYLVITALLLG-SGSLYMFR 87 (251)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhhccccchhHHHHHHHHh-hhHHHHHH
Confidence 7778888888888888877776 244444 4445666 44443333
No 33
>PRK07597 secE preprotein translocase subunit SecE; Reviewed
Probab=31.38 E-value=81 Score=24.03 Aligned_cols=34 Identities=15% Similarity=-0.043 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhcCHHHHHHHHHH
Q 018944 218 KSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAG 251 (348)
Q Consensus 218 K~~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllG 251 (348)
|+++..+|+.+.++..+.+.+++..+..++++++
T Consensus 29 ~~e~~~~t~~Vi~~~~~~~~~i~~vD~~~~~~~~ 62 (64)
T PRK07597 29 RKELVRSTIVVLVFVAFFALFFYLVDLLFSKLIS 62 (64)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888778888888888877765
No 34
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=31.27 E-value=1.1e+02 Score=27.77 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=20.6
Q ss_pred HHHHHHHhHhhhhcCHHHHHHHHHHHHHHHHHH
Q 018944 227 GIGGVGLVSAYISYSPEIAASFAAGLLGSLVYI 259 (348)
Q Consensus 227 ~ig~vg~~~~~l~yS~~~AlSyllGa~gGllYL 259 (348)
.+++++++..++.++...-+|.++|++++++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 48 (199)
T PF10112_consen 16 LIAAITFLVSFFGFDHSFLLSLLIGAVAFAVVY 48 (199)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344445555555567777777777777766643
No 35
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=31.25 E-value=2.2e+02 Score=26.67 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=19.2
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHh
Q 018944 238 ISYSPEIAASFAAGLLGSLVYIRMLGS 264 (348)
Q Consensus 238 l~yS~~~AlSyllGa~gGllYLrLL~r 264 (348)
-..+.+.-+|+++|.+.. +++-.++.
T Consensus 151 ~~~~~~~~~sfl~g~~~~-~wl~y~q~ 176 (205)
T PF07895_consen 151 SFISFQSLLSFLSGLLLL-MWLVYFQI 176 (205)
T ss_pred HHhhHHHHHHHHHHHHHH-HHHHHHHH
Confidence 346788899999998888 66665553
No 36
>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial. This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.
Probab=30.09 E-value=88 Score=23.29 Aligned_cols=34 Identities=6% Similarity=-0.026 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhcCHHHHHHHHHH
Q 018944 218 KSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAG 251 (348)
Q Consensus 218 K~~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllG 251 (348)
|+++..+|+.+..+..+.+.+++..+..+++++.
T Consensus 20 ~~e~~~~t~~Vi~~~~~~~~~~~~~D~~~~~~~~ 53 (55)
T TIGR00964 20 RKELITYTIVVIVFVIFFSLFLFGVDYVFGKLIS 53 (55)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888888888777777777888877777653
No 37
>PF02517 Abi: CAAX protease self-immunity; InterPro: IPR003675 Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide is removed by one of the CAAX prenyl proteases). The family contains the Q03530 from SWISSPROT CAAX prenyl protease []. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding []. While these proteins are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity []. This family also includes lysostaphin resistance protein A [].; GO: 0016020 membrane
Probab=29.56 E-value=2.2e+02 Score=21.73 Aligned_cols=38 Identities=21% Similarity=0.370 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhHhhhhcCHHHHHHHHHHHHHHHHHHH
Q 018944 223 FLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLVYIR 260 (348)
Q Consensus 223 l~Tl~ig~vg~~~~~l~yS~~~AlSyllGa~gGllYLr 260 (348)
.....++++.++..-+..+......+.+|.+.|++|.+
T Consensus 37 ~~a~~is~~~f~~~H~~~~~~~~~~~~~g~~~~~~~~~ 74 (91)
T PF02517_consen 37 WFAILISSLLFALWHLPNGPQFIYAFLFGLLFGYLYLR 74 (91)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444555577778888888888764
No 38
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=29.01 E-value=2.6e+02 Score=31.57 Aligned_cols=56 Identities=18% Similarity=0.099 Sum_probs=31.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh------------------cCHHHHHHHHHHHHHHHH--HHHHH
Q 018944 207 QSKEQYFKASLKSKLQFLTLGIGGVGLVSAYIS------------------YSPEIAASFAAGLLGSLV--YIRML 262 (348)
Q Consensus 207 esm~EY~~~~LK~~Lll~Tl~ig~vg~~~~~l~------------------yS~~~AlSyllGa~gGll--YLrLL 262 (348)
+..+|=+++-|||+-......+..++.+..++. .+.-.+++|++|+++|.+ |+-|-
T Consensus 32 ~~I~eGA~afL~~qyk~i~~~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iGM~ 107 (730)
T PLN02277 32 DAIRDGAEGFFRTQYGTISKMAVVLAFVILGIYLFRSLTPQQEAAGLGRATSAYITVASFLLGALCSGIAGYVGMW 107 (730)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 344555555677766655544444333322221 113588999999998865 55554
No 39
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=26.82 E-value=5.1e+02 Score=25.16 Aligned_cols=26 Identities=12% Similarity=0.028 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 018944 209 KEQYFKASLKSKLQFLTLGIGGVGLVSA 236 (348)
Q Consensus 209 m~EY~~~~LK~~Lll~Tl~ig~vg~~~~ 236 (348)
|.||.+ |-+-+++.+..+..++....
T Consensus 4 ~~~~~~--~~~~~~~~~~~~~~~~~~~~ 29 (400)
T PRK11646 4 VSQARN--LGKYFLLIDNMLVVLGFFVV 29 (400)
T ss_pred Cccccc--ccHHHHHHHHHHHHHHHHHH
Confidence 678999 98877777776666654443
No 40
>COG0344 Predicted membrane protein [Function unknown]
Probab=26.30 E-value=70 Score=30.40 Aligned_cols=34 Identities=18% Similarity=0.408 Sum_probs=27.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHH-hhHhhhcccccccc
Q 018944 244 IAASFAAGLL-GSLVYIRMLG-STVDSMAAGAKGLM 277 (348)
Q Consensus 244 ~AlSyllGa~-gGllYLrLL~-rsVD~Lg~~~~g~~ 277 (348)
.+++|++|.+ .|+++.|++. .++...|+++.|..
T Consensus 9 l~~~YLlGSIp~g~ii~k~~~~~D~R~~GSgN~GaT 44 (200)
T COG0344 9 LLIAYLLGSIPFGLIISKIFGGIDVRKIGSGNPGAT 44 (200)
T ss_pred HHHHHHhcchhHHHHHHHHhCCCCccccCCCCCCch
Confidence 3567999987 6899999998 99999987765543
No 41
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=25.44 E-value=53 Score=33.37 Aligned_cols=30 Identities=20% Similarity=0.187 Sum_probs=24.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 018944 240 YSPEIAASFAAGLLGSLVYIRMLGSTVDSM 269 (348)
Q Consensus 240 yS~~~AlSyllGa~gGllYLrLL~rsVD~L 269 (348)
+....=.++.+|...|+.|||..+++-...
T Consensus 195 ~~f~~l~s~~~g~~~sWtYLRfyq~h~~~~ 224 (326)
T KOG2890|consen 195 LVFASLPSITFGVLVSWTYLRFYQRHPTDE 224 (326)
T ss_pred HHhhhhHHHHHhhhhhhhhheecccCCccc
Confidence 445556789999999999999999998433
No 42
>COG4818 Predicted membrane protein [Function unknown]
Probab=25.41 E-value=66 Score=27.87 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018944 242 PEIAASFAAGLLGSLVYIRM 261 (348)
Q Consensus 242 ~~~AlSyllGa~gGllYLrL 261 (348)
.+-|+||++|-+.|+++|.|
T Consensus 5 iegaLCY~lgwitGllFlll 24 (105)
T COG4818 5 IEGALCYLLGWITGLLFLLL 24 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHh
Confidence 46799999999999999865
No 43
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=25.40 E-value=2.7e+02 Score=25.42 Aligned_cols=56 Identities=21% Similarity=0.184 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc------CHHHHH-----HHHHHHHHHHHHHHHHHh
Q 018944 209 KEQYFKASLKSKLQFLTLGIGGVGLVSAYISY------SPEIAA-----SFAAGLLGSLVYIRMLGS 264 (348)
Q Consensus 209 m~EY~~~~LK~~Lll~Tl~ig~vg~~~~~l~y------S~~~Al-----SyllGa~gGllYLrLL~r 264 (348)
-++|.....+..+..++.+++++++-.+|-.| +..... ||++|.++-++--.+-++
T Consensus 23 ~~~~q~i~~~~~~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~~~pflSf~lG~~~m~~~~~~~~k 89 (152)
T PF07954_consen 23 AKDLQSIARKSNLGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPRQKPFLSFLLGLGAMMAGSQLAGK 89 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcccccCCcCCccCcchhHHHHHHHHHHHHHHHHH
Confidence 35566655666666666667676666666555 344445 888888777665554443
No 44
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=24.56 E-value=1.1e+02 Score=26.07 Aligned_cols=14 Identities=21% Similarity=0.138 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 018944 245 AASFAAGLLGSLVY 258 (348)
Q Consensus 245 AlSyllGa~gGllY 258 (348)
.+|+.+|++.|++|
T Consensus 38 lIs~viGilLG~~~ 51 (93)
T PF06946_consen 38 LISVVIGILLGAAA 51 (93)
T ss_pred HHHHHHHHHHHHHh
Confidence 44555555555554
No 45
>PF03907 Spo7: Spo7-like protein; InterPro: IPR005605 Saccharomyces cerevisiae (Baker's yeast) Spo7 P18410 from SWISSPROT is an integral nuclear/ER membrane protein of unknown function, required for normal nuclear envelope morphology and sporulation [].
Probab=24.25 E-value=3.4e+02 Score=26.22 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=22.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q 018944 206 AQSKEQYFKASLKSKLQFLTLGIGGVGLVSAYISY 240 (348)
Q Consensus 206 eesm~EY~~~~LK~~Lll~Tl~ig~vg~~~~~l~y 240 (348)
|.=.++|.+ ||.+=-.+|+.+..++...++++|
T Consensus 15 esLR~q~~~--lr~rrrkyt~FL~~L~~~i~~~~y 47 (207)
T PF03907_consen 15 ESLRQQYLQ--LRARRRKYTFFLSLLCLWIAFFFY 47 (207)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577888 887777777777766666665554
No 46
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=23.96 E-value=1.4e+02 Score=28.87 Aligned_cols=65 Identities=25% Similarity=0.204 Sum_probs=37.7
Q ss_pred hccccCCCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcC--HHHHHHHHHHHHHHH
Q 018944 191 FRELRKPRGDPEVLAAQSKEQYFKASLKSKLQFLTLGIGGVGLVSAYISYS--PEIAASFAAGLLGSL 256 (348)
Q Consensus 191 ~re~~~~~~Dpe~~aeesm~EY~~~~LK~~Lll~Tl~ig~vg~~~~~l~yS--~~~AlSyllGa~gGl 256 (348)
.+.+...+.|.|... ..+++=.+..++..-.+..++++..|...+.++.+ .+...+|..|.++++
T Consensus 96 ~~~v~~~~~~~e~a~-~~l~~i~~~~~~y~~~l~~~~~g~~~~~f~~l~gG~w~d~~iaf~~~~~~~~ 162 (250)
T COG2966 96 SRAVEHGRLDLEEAH-KKLDEIQKQPLRYSRWLVLLMAGLAAAAFALLFGGGWLDFLIAFFAGLLGFL 162 (250)
T ss_pred HHHHHcCCCCHHHHH-HHHHHhhhCccccccHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 344444455555532 23333321125566677788888888888888875 445555555555543
No 47
>PLN02975 complex I subunit
Probab=23.27 E-value=1.3e+02 Score=25.68 Aligned_cols=42 Identities=24% Similarity=0.470 Sum_probs=27.9
Q ss_pred HHHHHHHHhHhhhhc------CHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 018944 226 LGIGGVGLVSAYISY------SPEIAASFAAGLLGSLVYIRMLGSTVDSM 269 (348)
Q Consensus 226 l~ig~vg~~~~~l~y------S~~~AlSyllGa~gGllYLrLL~rsVD~L 269 (348)
++++++++...|++. .+-.-++-+||.+||++|.. ++|-.++
T Consensus 35 a~~ta~s~~~~~~~~~~~~~~~~~mr~ag~iG~~gGf~~aY--q~S~~Rf 82 (97)
T PLN02975 35 ATITGVSVTVGYLSGIKPGIRGPSMVTGGLIGLMGGFMYAY--QNSAGRL 82 (97)
T ss_pred HHHHHHHHHHHHHHccCccccchHHHHHHHHHHhhhHHhhh--cccchhh
Confidence 345555555555554 56777888999999999853 4555554
No 48
>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Probab=23.01 E-value=1.4e+02 Score=23.73 Aligned_cols=45 Identities=13% Similarity=-0.007 Sum_probs=30.1
Q ss_pred HHhHHHHHHHH--HHHHHHHHHHHHHHHHHhHhhhhcCHHHHHHHHH
Q 018944 206 AQSKEQYFKAS--LKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAA 250 (348)
Q Consensus 206 eesm~EY~~~~--LK~~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyll 250 (348)
.+..+|..+-. -++++..+|+.+-.++++...++|..+..++.++
T Consensus 25 ~~~~~E~~KV~WPsrke~~~~t~~Vl~~v~~~s~~~~~~D~l~~~~i 71 (73)
T COG0690 25 KEVRKELKKVVWPTRKELIRSTLIVLVVVAFFSLFLYGLDQLIGKLV 71 (73)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445554400 1568888888888888888888888877766553
No 49
>PF10947 DUF2628: Protein of unknown function (DUF2628) ; InterPro: IPR024399 Some members in this family of proteins have been annotated as YigF. Their function is currently unknown.
Probab=22.45 E-value=2.8e+02 Score=22.70 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Q 018944 241 SPEIAASFAAGLLGSLVYIRMLGS 264 (348)
Q Consensus 241 S~~~AlSyllGa~gGllYLrLL~r 264 (348)
....+++...|..+-.+|.+-+.|
T Consensus 85 ~l~l~~~~~~g~~~n~~y~~~~~R 108 (108)
T PF10947_consen 85 GLSLAISLFFGMFANYWYYRHLKR 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555666666666677666543
No 50
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=21.69 E-value=2.4e+02 Score=22.62 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHH-HHhHhhhhcCHHH-HHHHHHHHHHHH
Q 018944 219 SKLQFLTLGIGGV-GLVSAYISYSPEI-AASFAAGLLGSL 256 (348)
Q Consensus 219 ~~Lll~Tl~ig~v-g~~~~~l~yS~~~-AlSyllGa~gGl 256 (348)
.+++...+.++++ ++++-|+..+... -..|++|.+..+
T Consensus 10 e~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~ 49 (76)
T PF06645_consen 10 EKLMQYILIISAIISFIVGYITQSFSYTFYIYGAGVVLTL 49 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433 4455566655443 345555555444
No 51
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=20.44 E-value=1.5e+02 Score=29.07 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=15.7
Q ss_pred cccCCcCccccccCCCCCCCC
Q 018944 35 ILLPKKKSMKWSTGVAPGEYG 55 (348)
Q Consensus 35 ~~~p~kk~~~ws~g~~pg~yg 55 (348)
..+|--++-.|=+|.-||+||
T Consensus 55 ~W~P~~~~P~~LdG~~PGD~G 75 (250)
T PLN00101 55 EWLPGLASPGYLNGSLPGDNG 75 (250)
T ss_pred ccCCCCCCCcccCCCCCCccC
Confidence 456766666788888888887
Done!