Query 018944
Match_columns 348
No_of_seqs 110 out of 118
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 08:28:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4av3_A K(+)-stimulated pyropho 70.7 14 0.00048 39.5 9.0 56 207-263 49-106 (735)
2 3dl8_C SECE; RECA-type ATPase 42.7 21 0.0007 26.6 3.3 39 218-256 23-61 (65)
3 2wsc_1 AT3G54890, LHCA1; photo 26.2 19 0.00066 33.4 0.9 20 36-55 48-67 (241)
4 3din_D Preprotein translocase 25.0 17 0.00057 27.1 0.2 38 219-256 24-61 (65)
5 2zjs_E Preprotein translocase 24.1 10 0.00034 27.8 -1.2 35 219-253 25-59 (60)
6 4ezc_A UREA transporter 1; mem 22.0 2.2E+02 0.0074 28.1 7.5 45 228-272 71-115 (384)
7 3lto_A Mevalonate diphosphate 18.7 27 0.00091 33.3 0.2 16 58-73 8-23 (323)
8 2bhw_A Chlorophyll A-B binding 17.4 1.2E+02 0.004 27.8 4.2 15 41-55 31-45 (232)
9 4av3_A K(+)-stimulated pyropho 17.2 1.6E+02 0.0055 31.6 5.7 81 177-263 573-661 (735)
10 4a01_A Proton pyrophosphatase; 14.3 3.7E+02 0.013 29.1 7.5 22 242-263 140-163 (766)
No 1
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=70.67 E-value=14 Score=39.49 Aligned_cols=56 Identities=13% Similarity=-0.004 Sum_probs=38.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcCHHHHHHHHHHHHHHHH--HHHHHH
Q 018944 207 QSKEQYFKASLKSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSLV--YIRMLG 263 (348)
Q Consensus 207 esm~EY~~~~LK~~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGa~gGll--YLrLL~ 263 (348)
+..+|=+++-|||+-... +.++++.++..+++.+..++++|++|++.|.+ |+-|--
T Consensus 49 ~~I~eGA~afL~rqyk~i-~~~~vv~~~ll~~~~~~~~ai~Fl~Ga~~S~~aGyiGM~v 106 (735)
T 4av3_A 49 SYIRSGADSFLAHETKAI-FKVAIVIAILLMIFTTWQTGVAFLLGAVMSASAGIVGMKM 106 (735)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566677775533 33444555556667899999999999998876 665543
No 2
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=42.70 E-value=21 Score=26.62 Aligned_cols=39 Identities=10% Similarity=0.030 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhcCHHHHHHHHHHHHHHH
Q 018944 218 KSKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSL 256 (348)
Q Consensus 218 K~~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGa~gGl 256 (348)
|+++..+|+++.++..+.+.+++..+..+++++..+-|+
T Consensus 23 r~e~~~~T~vViv~v~i~~~~i~~vD~~~~~~~~~i~~~ 61 (65)
T 3dl8_C 23 RELVVKATISVIIFSLAIGVYLWILDLTFTKIISFILSL 61 (65)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888888777777777788888877777655443
No 3
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=26.18 E-value=19 Score=33.42 Aligned_cols=20 Identities=30% Similarity=0.747 Sum_probs=6.4
Q ss_pred ccCCcCccccccCCCCCCCC
Q 018944 36 LLPKKKSMKWSTGVAPGEYG 55 (348)
Q Consensus 36 ~~p~kk~~~ws~g~~pg~yg 55 (348)
.+|--.+-.+-+|..||+||
T Consensus 48 w~P~~~~P~~L~G~~pgd~g 67 (241)
T 2wsc_1 48 WMPGEPRPAYLDGSAPGDFG 67 (241)
T ss_dssp -------------CTTSSCC
T ss_pred cCCCCCCcccccCCCCCcCC
Confidence 46765556788899999998
No 4
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=24.95 E-value=17 Score=27.10 Aligned_cols=38 Identities=8% Similarity=-0.180 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhHhhhhcCHHHHHHHHHHHHHHH
Q 018944 219 SKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLLGSL 256 (348)
Q Consensus 219 ~~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGa~gGl 256 (348)
+++..+|+++.++..+.+.+++..+..+++++..+-|+
T Consensus 24 ~e~~~~T~vViv~~~i~~~~i~~vD~~~~~~~~~i~~~ 61 (65)
T 3din_D 24 KELLTSFGVVLVILAVTSVYFFVLDFIFSGVVSAIFKA 61 (65)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36667777777777777777788888888777665544
No 5
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=24.06 E-value=10 Score=27.82 Aligned_cols=35 Identities=23% Similarity=0.010 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhHhhhhcCHHHHHHHHHHHH
Q 018944 219 SKLQFLTLGIGGVGLVSAYISYSPEIAASFAAGLL 253 (348)
Q Consensus 219 ~~Lll~Tl~ig~vg~~~~~l~yS~~~AlSyllGa~ 253 (348)
+++..+|+++.++..+.+.+++..+..+++++..+
T Consensus 25 ~e~~~~t~vViv~v~i~~~~~~~vD~~~~~~~~~i 59 (60)
T 2zjs_E 25 EQVVEGTQAILLFTLAFMVILGLYDTVFRFLIGLL 59 (60)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666777776666666666677777777666543
No 6
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=21.96 E-value=2.2e+02 Score=28.06 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=36.0
Q ss_pred HHHHHHhHhhhhcCHHHHHHHHHHHHHHHHHHHHHHhhHhhhccc
Q 018944 228 IGGVGLVSAYISYSPEIAASFAAGLLGSLVYIRMLGSTVDSMAAG 272 (348)
Q Consensus 228 ig~vg~~~~~l~yS~~~AlSyllGa~gGllYLrLL~rsVD~Lg~~ 272 (348)
++++++....+..++..|+..++|++.|.+--++|+-+-+.+..|
T Consensus 71 lsGlliLigl~i~sp~~al~allG~~vstltA~llg~~~~~I~~G 115 (384)
T 4ezc_A 71 ISGILILVGLLVQNPWCALNGCVGTVVSTLTALLLSQDRSAITAG 115 (384)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCCHHHHHcc
Confidence 445555555666899999999999999999999998887777543
No 7
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=18.73 E-value=27 Score=33.26 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=14.1
Q ss_pred CCccccccccCCCCCC
Q 018944 58 PTTTKLRKFWGGEKED 73 (348)
Q Consensus 58 p~~~~~~~~w~~~~~d 73 (348)
|+++-+-|||||.|+.
T Consensus 8 ~~nialiKYwGk~d~~ 23 (323)
T 3lto_A 8 PANIALIKYMGKKDEN 23 (323)
T ss_dssp EEEEEEECCTTCBCTT
T ss_pred cchhHHhHhcCccccc
Confidence 6788899999999887
No 8
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=17.39 E-value=1.2e+02 Score=27.83 Aligned_cols=15 Identities=47% Similarity=0.873 Sum_probs=12.5
Q ss_pred CccccccCCCCCCCC
Q 018944 41 KSMKWSTGVAPGEYG 55 (348)
Q Consensus 41 k~~~ws~g~~pg~yg 55 (348)
.+-.+-+|.-||+||
T Consensus 31 ~~P~~LdG~~pGD~G 45 (232)
T 2bhw_A 31 ESPSYLTGEFPGDYG 45 (232)
T ss_dssp SCCTTCCSCSTTCCS
T ss_pred CCccccCCcCCCCCC
Confidence 445788999999998
No 9
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=17.18 E-value=1.6e+02 Score=31.57 Aligned_cols=81 Identities=23% Similarity=0.217 Sum_probs=38.9
Q ss_pred HHhhhhccCCCcchhccccCC-CCChHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHhHhhhhcCHHHHHHH
Q 018944 177 DKATKAATGGSDVMFRELRKP-RGDPEVLAAQSKEQYFKA-------SLKSKLQFLTLGIGGVGLVSAYISYSPEIAASF 248 (348)
Q Consensus 177 ~ra~ka~t~gs~v~~re~~~~-~~Dpe~~aeesm~EY~~~-------~LK~~Lll~Tl~ig~vg~~~~~l~yS~~~AlSy 248 (348)
+-.+|++ .-|+.|+|++ ++.|-.+.-....||++. +||+=++ -. .+..+.-+.+.+..+++.-..|
T Consensus 573 ~AVgrAA----~~mV~EVRRQFreipGimeg~~kPdy~~cV~I~T~~AlkeMi~-p~-~l~v~~P~~vg~~~g~~~l~g~ 646 (735)
T 4av3_A 573 SAVTKAA----MKMVDEIRRQAREIPGLLEGKAKPDYNRCIEITSDNALKQMGY-PA-FIAILTPLVTGFLLGAEFVGGV 646 (735)
T ss_dssp HHHHHHH----HHHHTC-------------------CHHHHHHHHHHHHHTTHH-HH-HHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHhhCCCcccCCCCCChHHHHHHHHHHHHHHhHH-HH-HHHHHHHHHHHHHhHHHHHHHH
Confidence 3445665 4567788877 778887766677888762 4544332 22 2222333344556799999999
Q ss_pred HHHHHHHHHHHHHHH
Q 018944 249 AAGLLGSLVYIRMLG 263 (348)
Q Consensus 249 llGa~gGllYLrLL~ 263 (348)
++|++.+-+++-+.-
T Consensus 647 L~g~~v~G~~~Ai~m 661 (735)
T 4av3_A 647 LIGTVLSGAMLAILT 661 (735)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888776653
No 10
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=14.30 E-value=3.7e+02 Score=29.08 Aligned_cols=22 Identities=32% Similarity=0.249 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHH
Q 018944 242 PEIAASFAAGLLGSLV--YIRMLG 263 (348)
Q Consensus 242 ~~~AlSyllGa~gGll--YLrLL~ 263 (348)
..++++|++|++.|.+ |+-|--
T Consensus 140 ~~~a~~Fl~Ga~~S~~aG~iGM~v 163 (766)
T 4a01_A 140 IFSTVSFLLGGVTSLVSGFLGMKI 163 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999998865 555543
Done!