Query 018944
Match_columns 348
No_of_seqs 110 out of 118
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 08:28:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018944.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018944hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rwta_ f.43.1.1 (A:) Chloroph 28.5 7 0.00051 32.9 0.6 25 36-76 11-37 (218)
2 d1fi4a1 d.14.1.5 (A:3-190) Mev 19.3 11 0.00078 31.6 -0.1 16 58-73 9-24 (188)
3 d1vi0a2 a.121.1.1 (A:78-194) H 10.9 2.3E+02 0.017 19.2 6.6 25 240-264 70-94 (117)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 7.3 3.1E+02 0.022 23.0 5.7 32 308-339 50-81 (248)
5 d1jb0l_ f.31.1.1 (L:) Photosys 6.5 4.2E+02 0.031 21.2 5.8 23 243-265 116-138 (151)
6 d1v54j_ f.23.4.1 (J:) Mitochon 6.0 1.8E+02 0.013 20.1 2.7 17 221-237 31-47 (58)
7 d1pz1a_ c.1.7.1 (A:) Putative 5.3 1.5E+02 0.011 24.5 2.4 48 116-173 283-331 (333)
8 d2co5a1 a.4.5.48 (A:5-93) STIV 5.1 84 0.0061 22.9 0.5 30 188-219 53-82 (89)
9 d1l7va_ f.22.1.1 (A:) ABC tran 5.1 2.4E+02 0.018 24.3 3.8 21 210-232 226-246 (324)
10 d1e12a_ f.13.1.1 (A:) Halorhod 4.8 7.6E+02 0.056 19.8 9.5 20 244-263 40-59 (239)
No 1
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=28.45 E-value=7 Score=32.94 Aligned_cols=25 Identities=36% Similarity=0.520 Sum_probs=20.1
Q ss_pred ccC--CcCccccccCCCCCCCCCCCCccccccccCCCCCCCCC
Q 018944 36 LLP--KKKSMKWSTGVAPGEYGGPPTTTKLRKFWGGEKEDPLT 76 (348)
Q Consensus 36 ~~p--~kk~~~ws~g~~pg~ygg~p~~~~~~~~w~~~~~dp~~ 76 (348)
.|| ..++-.|-.|.-||||| +||+.
T Consensus 11 ~~~~~~~~~P~~LdGs~pGD~G----------------FDPLg 37 (218)
T d1rwta_ 11 YLGPFSGESPSYLTGEFPGDYG----------------WDTAG 37 (218)
T ss_dssp TTGGGGCSCCTTCCSCSTTCCS----------------CCTTC
T ss_pred cCCccccCCCcccCCCCCCCCC----------------cCCcc
Confidence 455 44555899999999999 79999
No 2
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.33 E-value=11 Score=31.58 Aligned_cols=16 Identities=25% Similarity=0.686 Sum_probs=13.6
Q ss_pred CCccccccccCCCCCC
Q 018944 58 PTTTKLRKFWGGEKED 73 (348)
Q Consensus 58 p~~~~~~~~w~~~~~d 73 (348)
|.++-+=|||||-+++
T Consensus 9 psNIALiKYWGK~d~~ 24 (188)
T d1fi4a1 9 PVNIATLKYWGKRDTK 24 (188)
T ss_dssp CCEEEEECCCCEEETT
T ss_pred cCcEEEEEeccccCcc
Confidence 7889999999997655
No 3
>d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=10.88 E-value=2.3e+02 Score=19.15 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=20.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHh
Q 018944 240 YSPEIAASFAAGLLGSLVYIRMLGS 264 (348)
Q Consensus 240 yS~~~AlSyllGa~gGllYLrLL~r 264 (348)
.+++.+...++|++.+++|--++..
T Consensus 70 ~d~~~~a~~i~g~i~~~~~~w~~~~ 94 (117)
T d1vi0a2 70 LDVRLARQMIFGTIDETVTTWVMND 94 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5899999999999999988666643
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=7.29 E-value=3.1e+02 Score=23.05 Aligned_cols=32 Identities=9% Similarity=0.152 Sum_probs=25.0
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018944 308 GFLHLELIPMLVGFFTYKIATFFQAVEEAVSI 339 (348)
Q Consensus 308 g~~~LeLlP~llGFLTYK~AlLvqa~rdv~~~ 339 (348)
.....-++|++++++++-+--+++.+.-.+..
T Consensus 50 ~~p~kyi~PG~~~l~~Fvi~Pi~yT~~iaFTN 81 (248)
T d2r6gf1 50 AYAWRYVYPGMAGMGLFVLFPLVCTIAIAFTN 81 (248)
T ss_dssp CTTHHHHHHHHHHHHHHTHHHHHHHHHGGGBC
T ss_pred ccceehhhhHHHHHHHHHHHhheeEEEEEEEE
Confidence 33357799999999999988888887766554
No 5
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=6.52 E-value=4.2e+02 Score=21.16 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 018944 243 EIAASFAAGLLGSLVYIRMLGST 265 (348)
Q Consensus 243 ~~AlSyllGa~gGllYLrLL~rs 265 (348)
+-+-.|++|+++|-+.-.+|-..
T Consensus 116 ~F~~GF~~Gg~GGa~fAy~Ll~n 138 (151)
T d1jb0l_ 116 QFTAGFFVGAMGSAFVAFFLLEN 138 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhchhhhccccHHHHHHHHHcc
Confidence 67889999999998877666544
No 6
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.95 E-value=1.8e+02 Score=20.06 Aligned_cols=17 Identities=18% Similarity=0.090 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhHhh
Q 018944 221 LQFLTLGIGGVGLVSAY 237 (348)
Q Consensus 221 Lll~Tl~ig~vg~~~~~ 237 (348)
|...|.+++++|++++.
T Consensus 31 LYr~Tm~L~~~G~~~s~ 47 (58)
T d1v54j_ 31 LYRVTMTLCLGGTLYSL 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55668888877776654
No 7
>d1pz1a_ c.1.7.1 (A:) Putative oxidoreductase YhdN {Bacillus subtilis [TaxId: 1423]}
Probab=5.34 E-value=1.5e+02 Score=24.45 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=26.5
Q ss_pred eeeccc-ccccccccchHhhhhhhhhhcchhhHHhhhhccccCCCCCCcccCCcChHHH
Q 018944 116 SLNRVM-SLDSLEVDLSKELTADSKTALQQPVEAAIQDSQQKSGSVPRKWRLAPTRREQ 173 (348)
Q Consensus 116 sl~R~~-~lds~dvdls~el~~~~~~~~~~q~~a~~~~~~~~~~~~~~~w~~aPTr~Eq 173 (348)
+..++. .|+.++.+||+|-++. +++...... .+...+.|..+|++.|+
T Consensus 283 ~~~~l~enl~a~~~~Ls~ee~~~--------i~~i~~~~~--~~p~~p~~~~pp~~~~~ 331 (333)
T d1pz1a_ 283 KPGQLEALSEITGWTLNSEDQKD--------INTILENTI--SDPVGPEFMAPPTREEI 331 (333)
T ss_dssp SGGGGTTCTTSSSCCCCHHHHHH--------HHHHHHHHC--SSCCCSGGGCCCCTTSS
T ss_pred CHHHHHHHHHHCCCCCCHHHHHH--------HHHHhhccC--CCCCCcCCCCCCccCCC
Confidence 344442 3567788999888652 222222111 13334788888887553
No 8
>d2co5a1 a.4.5.48 (A:5-93) STIV F93 {Sulfolobus turreted icosahedral virus [TaxId: 269145]}
Probab=5.09 E-value=84 Score=22.92 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=19.7
Q ss_pred cchhccccCCCCChHHHHHHhHHHHHHHHHHH
Q 018944 188 DVMFRELRKPRGDPEVLAAQSKEQYFKASLKS 219 (348)
Q Consensus 188 ~v~~re~~~~~~Dpe~~aeesm~EY~~~~LK~ 219 (348)
|.++||-+.+++.---+.+.+|.||+. |..
T Consensus 53 dkilreeeapdgkvlfltekgmkefee--lhe 82 (89)
T d2co5a1 53 DKILREEEAPDGKVLFLTEKGMKEFEE--LHE 82 (89)
T ss_dssp TTSEEEECCTTSCEEEECHHHHHHHHH--HHH
T ss_pred HHHhhhhcCCCceEEEEehhhhHHHHH--HHH
Confidence 455666555555444456889999999 754
No 9
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=5.08 E-value=2.4e+02 Score=24.27 Aligned_cols=21 Identities=19% Similarity=0.021 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018944 210 EQYFKASLKSKLQFLTLGIGGVG 232 (348)
Q Consensus 210 ~EY~~~~LK~~Lll~Tl~ig~vg 232 (348)
-++.+ .|..++..+..++++.
T Consensus 226 v~v~~--~r~~~l~~~~ll~a~~ 246 (324)
T d1l7va_ 226 LPLWF--WRNVLVAATGWMVGVS 246 (324)
T ss_dssp CCHHH--HHHHHHHHHHHHHHHH
T ss_pred cchHH--HHHHHHHHHHHHHHHH
Confidence 34666 7777777666555443
No 10
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=4.78 E-value=7.6e+02 Score=19.77 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018944 244 IAASFAAGLLGSLVYIRMLG 263 (348)
Q Consensus 244 ~AlSyllGa~gGllYLrLL~ 263 (348)
..++.++=+++++.|++|-.
T Consensus 40 ~~l~~~I~~IA~~~Y~~Ma~ 59 (239)
T d1e12a_ 40 WGATLMIPLVSISSYLGLLS 59 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 45777888899999999844
Done!