Query 018945
Match_columns 348
No_of_seqs 137 out of 845
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 08:29:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ucg_A Polyadenylate-binding p 90.6 0.27 9.3E-06 36.5 4.3 38 238-280 4-41 (89)
2 1s79_A Lupus LA protein; RRM, 90.6 0.3 1E-05 38.2 4.7 39 238-281 9-47 (103)
3 2ywk_A Putative RNA-binding pr 89.2 0.55 1.9E-05 35.2 5.1 37 239-280 15-51 (95)
4 2lxi_A RNA-binding protein 10; 89.2 0.13 4.4E-06 39.2 1.4 36 240-280 1-37 (91)
5 4a8x_A RNA-binding protein wit 89.1 0.36 1.2E-05 35.6 3.9 38 238-280 2-39 (88)
6 3bs9_A Nucleolysin TIA-1 isofo 88.9 0.6 2.1E-05 34.3 5.1 37 239-280 5-41 (87)
7 3s7r_A Heterogeneous nuclear r 88.9 0.59 2E-05 34.5 5.0 37 239-280 10-46 (87)
8 2dnz_A Probable RNA-binding pr 88.4 0.66 2.2E-05 34.8 5.0 37 239-280 4-40 (95)
9 2cq3_A RNA-binding protein 9; 88.3 0.7 2.4E-05 35.3 5.2 39 238-281 13-51 (103)
10 3mdf_A Peptidyl-prolyl CIS-tra 88.2 0.45 1.6E-05 34.9 3.9 37 239-280 6-42 (85)
11 2lkz_A RNA-binding protein 5; 88.0 0.39 1.3E-05 37.1 3.5 39 239-280 8-46 (95)
12 4f25_A Polyadenylate-binding p 88.0 0.59 2E-05 36.9 4.7 37 240-281 5-41 (115)
13 2do4_A Squamous cell carcinoma 87.9 0.63 2.2E-05 35.4 4.7 39 238-281 15-53 (100)
14 1x4e_A RNA binding motif, sing 87.9 0.68 2.3E-05 34.0 4.7 37 239-280 4-40 (85)
15 1wf0_A TDP-43, TAR DNA-binding 87.6 0.5 1.7E-05 35.1 3.9 37 239-280 4-40 (88)
16 1fxl_A Paraneoplastic encephal 87.6 0.63 2.1E-05 38.0 4.8 38 239-281 1-38 (167)
17 2xs2_A Deleted in azoospermia- 87.6 0.78 2.7E-05 35.0 5.1 38 238-280 7-44 (102)
18 2x1f_A MRNA 3'-END-processing 87.5 0.56 1.9E-05 35.5 4.1 36 240-280 2-37 (96)
19 4fxv_A ELAV-like protein 1; RN 87.4 0.72 2.5E-05 35.6 4.8 36 240-280 19-54 (99)
20 3md1_A Nuclear and cytoplasmic 87.4 0.87 3E-05 33.1 5.0 35 241-280 2-36 (83)
21 2dgs_A DAZ-associated protein 87.4 0.73 2.5E-05 34.9 4.8 38 238-280 8-45 (99)
22 3s8s_A Histone-lysine N-methyl 87.3 0.77 2.6E-05 36.2 5.0 38 239-281 5-42 (110)
23 1p27_B RNA-binding protein 8A; 87.1 0.95 3.3E-05 34.7 5.4 38 238-280 21-58 (106)
24 1uaw_A Mouse-musashi-1; RNP-ty 86.9 0.6 2.1E-05 33.5 3.9 35 241-280 1-35 (77)
25 3r27_A HnRNP L, heterogeneous 86.9 0.9 3.1E-05 35.8 5.1 37 238-279 19-55 (100)
26 2cpd_A Apobec-1 stimulating pr 86.9 0.81 2.8E-05 34.8 4.8 41 238-281 13-53 (99)
27 2e5h_A Zinc finger CCHC-type a 86.8 0.63 2.1E-05 34.8 4.1 37 239-280 15-51 (94)
28 2cqc_A Arginine/serine-rich sp 86.8 0.77 2.6E-05 34.3 4.5 38 238-280 13-50 (95)
29 2dgx_A KIAA0430 protein; RRM d 86.8 0.57 2E-05 35.6 3.8 42 239-282 8-50 (96)
30 2cqd_A RNA-binding region cont 86.6 0.7 2.4E-05 36.2 4.4 38 238-280 15-52 (116)
31 1whw_A Hypothetical protein ri 86.6 0.71 2.4E-05 35.0 4.3 39 238-281 6-44 (99)
32 3ulh_A THO complex subunit 4; 86.6 0.9 3.1E-05 34.9 4.9 37 239-280 28-64 (107)
33 2do0_A HnRNP M, heterogeneous 86.6 0.78 2.7E-05 35.7 4.6 37 239-280 14-50 (114)
34 2dnh_A Bruno-like 5, RNA bindi 86.2 0.98 3.3E-05 34.5 5.0 37 239-280 14-50 (105)
35 2cq0_A Eukaryotic translation 86.1 0.93 3.2E-05 34.6 4.8 38 238-280 13-50 (103)
36 2cpf_A RNA binding motif prote 86.1 0.79 2.7E-05 34.6 4.3 37 239-280 4-40 (98)
37 2cqg_A TDP-43, TAR DNA-binding 85.9 0.92 3.2E-05 34.6 4.6 37 239-280 14-50 (103)
38 2dgo_A Cytotoxic granule-assoc 85.8 1.1 3.7E-05 35.0 5.1 38 238-280 13-50 (115)
39 2d9p_A Polyadenylate-binding p 85.8 0.99 3.4E-05 34.4 4.8 38 238-280 13-50 (103)
40 2cq4_A RNA binding motif prote 85.7 0.85 2.9E-05 35.6 4.4 38 238-280 23-60 (114)
41 4f02_A Polyadenylate-binding p 85.6 0.89 3.1E-05 39.6 5.0 38 238-280 13-50 (213)
42 2cqi_A Nucleolysin TIAR; RNA r 85.4 0.88 3E-05 34.8 4.3 38 238-280 13-50 (103)
43 2khc_A Testis-specific RNP-typ 85.3 0.97 3.3E-05 35.4 4.6 38 238-280 38-75 (118)
44 1oo0_B CG8781-PA, drosophila Y 85.2 1 3.5E-05 34.8 4.7 38 238-280 24-61 (110)
45 3md3_A Nuclear and cytoplasmic 85.1 0.76 2.6E-05 37.4 4.1 36 241-281 1-36 (166)
46 2dgv_A HnRNP M, heterogeneous 85.1 1 3.6E-05 33.4 4.5 37 239-280 7-43 (92)
47 2dnm_A SRP46 splicing factor; 85.1 0.92 3.1E-05 34.6 4.3 37 239-280 12-48 (103)
48 1x4c_A Splicing factor, argini 85.0 1.2 4.1E-05 34.5 5.0 37 239-280 14-50 (108)
49 3nmr_A Cugbp ELAV-like family 85.0 0.95 3.2E-05 37.3 4.6 36 240-280 3-38 (175)
50 2cq1_A PTB-like protein L; RRM 84.9 1.2 4.1E-05 34.7 4.9 38 238-280 13-50 (101)
51 1wex_A Hypothetical protein (r 84.9 1.2 4.1E-05 34.9 4.9 37 239-280 14-50 (104)
52 2cpz_A CUG triplet repeat RNA- 84.9 0.89 3.1E-05 35.5 4.2 39 238-281 23-61 (115)
53 2rs2_A Musashi-1, RNA-binding 84.8 0.94 3.2E-05 35.4 4.3 38 238-280 23-60 (109)
54 2ytc_A PRE-mRNA-splicing facto 84.8 1.1 3.7E-05 32.8 4.4 37 238-279 10-46 (85)
55 2div_A TRNA selenocysteine ass 84.8 0.89 3E-05 34.4 4.0 37 239-280 8-45 (99)
56 2dgt_A RNA-binding protein 30; 84.7 1.1 3.6E-05 33.6 4.4 39 238-281 8-46 (92)
57 1x5s_A Cold-inducible RNA-bind 84.6 0.76 2.6E-05 35.0 3.6 37 239-280 11-47 (102)
58 3lqv_A PRE-mRNA branch site pr 84.6 1.3 4.3E-05 34.5 5.0 38 239-281 7-44 (115)
59 2ad9_A Polypyrimidine tract-bi 84.5 1.1 3.7E-05 36.3 4.6 38 238-280 29-66 (119)
60 1sjq_A Polypyrimidine tract-bi 84.4 0.9 3.1E-05 36.1 4.0 37 239-280 15-51 (105)
61 1wi8_A EIF-4B, eukaryotic tran 84.4 1.1 3.7E-05 34.3 4.4 38 238-281 13-50 (104)
62 2dnq_A RNA-binding protein 4B; 84.3 1.3 4.6E-05 32.8 4.8 38 239-281 7-44 (90)
63 1nu4_A U1A RNA binding domain; 84.3 0.96 3.3E-05 34.0 4.0 38 239-278 7-45 (97)
64 1x5u_A Splicing factor 3B subu 84.3 0.96 3.3E-05 34.6 4.0 39 238-281 13-51 (105)
65 2dhg_A TRNA selenocysteine ass 84.2 1.1 3.6E-05 34.3 4.3 37 239-280 8-45 (104)
66 1x4d_A Matrin 3; structural ge 84.2 0.9 3.1E-05 35.7 3.9 37 239-280 14-51 (102)
67 2cph_A RNA binding motif prote 84.1 0.9 3.1E-05 34.8 3.8 38 238-280 13-50 (107)
68 2dng_A Eukaryotic translation 84.1 1.5 5.2E-05 33.4 5.2 38 238-281 13-50 (103)
69 2krb_A Eukaryotic translation 84.0 1.3 4.4E-05 32.3 4.5 38 240-279 1-41 (81)
70 1x5t_A Splicing factor 3B subu 83.9 0.8 2.7E-05 34.4 3.4 37 239-280 4-41 (96)
71 2dnp_A RNA-binding protein 14; 83.9 0.92 3.2E-05 33.8 3.7 38 239-281 8-45 (90)
72 1x4h_A RNA-binding protein 28; 83.9 0.93 3.2E-05 35.0 3.8 37 239-280 14-50 (111)
73 2dh8_A DAZ-associated protein 83.8 0.89 3E-05 34.9 3.7 38 238-280 14-51 (105)
74 1x5o_A RNA binding motif, sing 83.7 1.4 4.9E-05 34.2 4.9 38 238-280 23-60 (114)
75 1p1t_A Cleavage stimulation fa 83.7 0.82 2.8E-05 34.8 3.4 37 239-280 7-43 (104)
76 2err_A Ataxin-2-binding protei 83.7 1.1 3.7E-05 35.0 4.1 39 238-281 27-65 (109)
77 2cqb_A Peptidyl-prolyl CIS-tra 83.4 0.77 2.6E-05 34.9 3.1 37 239-280 11-47 (102)
78 2jrs_A RNA-binding protein 39; 83.3 1.4 4.9E-05 34.3 4.8 37 239-280 25-61 (108)
79 2fy1_A RNA-binding motif prote 83.2 1.4 4.6E-05 34.9 4.6 38 239-281 6-43 (116)
80 2cjk_A Nuclear polyadenylated 83.0 1 3.5E-05 36.9 4.0 36 240-280 3-38 (167)
81 2cpj_A Non-POU domain-containi 82.9 1.4 4.8E-05 33.3 4.5 37 239-280 14-50 (99)
82 2dgp_A Bruno-like 4, RNA bindi 82.8 0.92 3.2E-05 34.8 3.4 38 238-280 11-48 (106)
83 1b7f_A Protein (SXL-lethal pro 82.7 0.98 3.4E-05 37.0 3.7 37 239-280 2-38 (168)
84 1x4a_A Splicing factor, argini 82.6 1.5 5.3E-05 33.7 4.7 38 238-280 20-57 (109)
85 2dgu_A Heterogeneous nuclear r 82.6 1 3.5E-05 34.5 3.6 38 239-281 10-47 (103)
86 3ex7_B RNA-binding protein 8A; 82.5 1.3 4.6E-05 35.0 4.3 38 238-280 20-57 (126)
87 1l3k_A Heterogeneous nuclear r 82.3 1.7 5.7E-05 36.6 5.1 37 239-280 12-48 (196)
88 1why_A Hypothetical protein ri 82.2 1.3 4.6E-05 33.3 4.1 38 238-280 15-52 (97)
89 2kt5_A RNA and export factor-b 82.2 1.5 5.1E-05 34.8 4.5 37 239-280 34-70 (124)
90 1x4b_A Heterogeneous nuclear r 82.2 1.4 4.9E-05 34.4 4.4 37 239-280 26-62 (116)
91 2ki2_A SS-DNA binding protein 82.1 0.69 2.4E-05 34.4 2.3 35 241-280 2-36 (90)
92 2jwn_A Embryonic polyadenylate 82.1 1.2 4E-05 35.3 3.9 37 239-280 35-71 (124)
93 3d2w_A TAR DNA-binding protein 81.9 1.5 5.1E-05 33.0 4.2 38 238-280 9-46 (89)
94 2pe8_A Splicing factor 45; RRM 81.8 2 7E-05 33.6 5.1 42 237-280 5-48 (105)
95 1h2v_Z 20 kDa nuclear CAP bind 81.8 1.8 6.1E-05 35.8 5.0 37 239-280 38-74 (156)
96 2ku7_A MLL1 PHD3-CYP33 RRM chi 81.4 1.5 5.1E-05 35.2 4.3 38 238-280 61-98 (140)
97 2nlw_A Eukaryotic translation 81.3 1.9 6.4E-05 33.2 4.7 38 239-278 14-54 (105)
98 1x4g_A Nucleolysin TIAR; struc 81.0 1.6 5.6E-05 33.6 4.3 38 238-280 23-60 (109)
99 3ns6_A Eukaryotic translation 81.0 0.64 2.2E-05 35.7 1.8 40 240-281 6-48 (100)
100 3beg_B Splicing factor, argini 80.1 1.4 4.9E-05 34.6 3.7 37 239-280 15-51 (115)
101 1u6f_A Tcubp1, RNA-binding pro 80.0 1.5 5.1E-05 35.3 3.9 38 238-280 40-77 (139)
102 2cpy_A RNA-binding protein 12; 79.8 1.3 4.6E-05 34.6 3.4 39 238-281 13-52 (114)
103 2j76_E EIF-4B, EIF4B, eukaryot 79.8 1.1 3.8E-05 34.2 2.9 38 238-281 17-54 (100)
104 2dgw_A Probable RNA-binding pr 79.8 2.2 7.7E-05 31.6 4.5 37 238-280 8-44 (91)
105 2voo_A Lupus LA protein; RNA-b 79.6 1.7 5.8E-05 37.8 4.3 39 238-281 107-145 (193)
106 2a3j_A U1 small nuclear ribonu 79.3 1.5 5.2E-05 35.6 3.7 39 239-279 28-67 (127)
107 2hzc_A Splicing factor U2AF 65 79.3 2.1 7.2E-05 31.2 4.2 42 239-280 5-52 (87)
108 2kxn_B Transformer-2 protein h 79.2 1.4 4.9E-05 35.6 3.5 38 238-280 44-81 (129)
109 1x4f_A Matrin 3; structural ge 79.2 2.1 7.1E-05 34.3 4.4 36 239-279 24-60 (112)
110 1wez_A HnRNP H', FTP-3, hetero 79.1 2.2 7.4E-05 32.9 4.4 37 238-280 13-49 (102)
111 2qfj_A FBP-interacting repress 79.1 1.9 6.5E-05 36.9 4.4 37 239-280 27-63 (216)
112 2cpi_A CCR4-NOT transcription 78.4 2 6.9E-05 33.4 4.1 39 238-281 13-54 (111)
113 1whx_A Hypothetical protein ri 78.4 2.1 7.2E-05 33.5 4.1 36 239-279 9-44 (111)
114 1rk8_A CG8781-PA, CG8781-PA pr 78.2 2.8 9.6E-05 35.0 5.2 38 238-280 70-107 (165)
115 2hvz_A Splicing factor, argini 78.2 1.9 6.5E-05 32.6 3.8 34 242-280 2-35 (101)
116 2la4_A Nuclear and cytoplasmic 77.6 2.7 9.1E-05 31.8 4.5 35 239-278 26-60 (101)
117 1iqt_A AUF1, heterogeneous nuc 77.6 0.96 3.3E-05 32.2 1.8 34 242-280 1-34 (75)
118 2dha_A FLJ20171 protein; RRM d 77.6 1.8 6.3E-05 35.0 3.7 38 240-280 23-62 (123)
119 2db1_A Heterogeneous nuclear r 77.5 2.1 7.3E-05 33.8 4.0 40 239-281 16-56 (118)
120 2ek1_A RNA-binding protein 12; 76.8 1.4 4.9E-05 32.8 2.6 34 239-277 14-47 (95)
121 1wg5_A Heterogeneous nuclear r 76.5 2.7 9.1E-05 32.3 4.2 37 239-280 14-51 (104)
122 2la6_A RNA-binding protein FUS 76.3 3.3 0.00011 31.2 4.7 37 239-280 12-56 (99)
123 3p5t_L Cleavage and polyadenyl 76.3 2 6.7E-05 32.0 3.3 37 241-280 2-38 (90)
124 2mss_A Protein (musashi1); RNA 76.1 1.6 5.6E-05 31.0 2.7 33 243-280 2-34 (75)
125 2i2y_A Fusion protein consists 75.9 2.3 7.9E-05 34.8 3.9 38 238-280 71-108 (150)
126 2jvo_A Nucleolar protein 3; nu 75.9 3 0.0001 32.4 4.4 39 237-280 28-66 (108)
127 2e44_A Insulin-like growth fac 75.5 1.9 6.7E-05 32.2 3.1 37 239-280 14-51 (96)
128 3ue2_A Poly(U)-binding-splicin 75.2 2.9 9.8E-05 33.6 4.2 41 239-281 19-61 (118)
129 2m2b_A RNA-binding protein 10; 74.9 2 6.9E-05 34.5 3.2 39 238-281 21-61 (131)
130 1qm9_A Polypyrimidine tract-bi 74.5 2.2 7.5E-05 36.2 3.5 38 239-281 2-40 (198)
131 2kvi_A Nuclear polyadenylated 74.4 4 0.00014 30.6 4.7 37 239-280 9-46 (96)
132 3n9u_C Cleavage and polyadenyl 74.4 3.3 0.00011 34.7 4.5 38 240-280 55-92 (156)
133 2cpe_A RNA-binding protein EWS 74.3 2.7 9.2E-05 32.5 3.7 38 238-280 13-58 (113)
134 2lea_A Serine/arginine-rich sp 73.5 2 7E-05 34.9 2.9 38 238-280 45-82 (135)
135 2xnq_A Nuclear polyadenylated 73.3 4.4 0.00015 30.7 4.7 37 239-280 21-58 (97)
136 2dnn_A RNA-binding protein 12; 73.3 3 0.0001 32.8 3.8 35 240-280 16-50 (109)
137 3pgw_A U1-A; protein-RNA compl 72.5 3 0.0001 37.5 4.1 39 239-279 8-47 (282)
138 3nmr_A Cugbp ELAV-like family 72.2 5.3 0.00018 32.5 5.3 38 238-280 93-130 (175)
139 2e5g_A U6 snRNA-specific termi 72.0 5.1 0.00017 29.9 4.7 32 239-275 7-38 (94)
140 2hgl_A HNRPF protein, heteroge 72.0 3.2 0.00011 34.1 3.8 38 239-281 43-83 (136)
141 2ghp_A U4/U6 snRNA-associated 71.8 3.7 0.00012 37.1 4.5 39 238-281 39-77 (292)
142 2dis_A Unnamed protein product 71.6 3.3 0.00011 31.6 3.7 36 238-278 6-42 (109)
143 1l3k_A Heterogeneous nuclear r 71.5 4.8 0.00016 33.6 4.9 37 239-280 103-139 (196)
144 2lmi_A GRSF-1, G-rich sequence 71.4 2.5 8.6E-05 32.6 2.9 40 239-281 10-50 (107)
145 2hgn_A Heterogeneous nuclear r 71.4 2.3 7.9E-05 35.1 2.8 38 238-281 44-81 (139)
146 2cqp_A RNA-binding protein 12; 71.3 2.1 7.2E-05 32.1 2.4 27 238-267 13-39 (98)
147 2f3j_A RNA and export factor b 71.1 3.5 0.00012 35.2 4.0 37 239-280 87-123 (177)
148 2kn4_A Immunoglobulin G-bindin 70.7 3.2 0.00011 34.0 3.6 38 238-280 68-105 (158)
149 3md3_A Nuclear and cytoplasmic 70.2 5.9 0.0002 31.9 5.1 37 239-280 86-122 (166)
150 1b7f_A Protein (SXL-lethal pro 69.8 6.1 0.00021 32.0 5.1 39 238-281 87-125 (168)
151 1wf1_A RNA-binding protein RAL 69.5 4.5 0.00015 31.1 4.0 36 239-279 26-62 (110)
152 2qfj_A FBP-interacting repress 69.0 5.8 0.0002 33.7 5.0 37 239-280 124-160 (216)
153 2adc_A Polypyrimidine tract-bi 68.7 3.8 0.00013 35.9 3.8 39 238-281 32-71 (229)
154 1wg1_A KIAA1579 protein, homol 67.9 4.4 0.00015 29.8 3.5 33 239-277 4-36 (88)
155 3q2s_C Cleavage and polyadenyl 67.9 5.6 0.00019 35.4 4.8 39 239-280 67-105 (229)
156 2g4b_A Splicing factor U2AF 65 67.2 5.5 0.00019 32.5 4.3 36 240-280 94-129 (172)
157 2dnl_A Cytoplasmic polyadenyla 66.4 3.9 0.00013 31.8 3.1 35 239-279 7-41 (114)
158 1fxl_A Paraneoplastic encephal 66.2 8.4 0.00029 31.0 5.2 38 238-280 86-123 (167)
159 2hgm_A HNRPF protein, heteroge 65.3 6.2 0.00021 32.0 4.1 36 239-280 41-78 (126)
160 2g4b_A Splicing factor U2AF 65 64.6 8.7 0.0003 31.2 5.1 41 240-280 4-50 (172)
161 2diu_A KIAA0430 protein; struc 64.1 5.2 0.00018 31.3 3.3 35 240-275 8-44 (96)
162 2yh0_A Splicing factor U2AF 65 63.2 8.6 0.00029 32.1 4.9 38 238-280 112-149 (198)
163 2cjk_A Nuclear polyadenylated 61.4 5.8 0.0002 32.2 3.3 37 239-280 86-122 (167)
164 3sde_A Paraspeckle component 1 61.0 8.7 0.0003 34.3 4.7 37 239-280 21-57 (261)
165 1l8d_A DNA double-strand break 60.9 15 0.00053 28.6 5.7 29 318-346 48-82 (112)
166 3tyt_A Heterogeneous nuclear r 60.4 9.3 0.00032 33.2 4.7 36 240-280 4-40 (205)
167 2dhx_A Poly (ADP-ribose) polym 60.2 11 0.00036 30.0 4.4 35 240-277 8-45 (104)
168 2e5j_A Methenyltetrahydrofolat 59.5 6.8 0.00023 29.3 3.2 26 239-267 18-43 (97)
169 4f02_A Polyadenylate-binding p 59.3 9.8 0.00034 32.8 4.6 38 239-281 102-139 (213)
170 1wel_A RNA-binding protein 12; 57.4 5.1 0.00017 31.6 2.2 31 239-274 24-54 (124)
171 2cqh_A IGF-II mRNA-binding pro 57.3 6.3 0.00021 29.1 2.6 26 239-267 7-32 (93)
172 3v4m_A Splicing factor U2AF 65 56.8 9 0.00031 29.7 3.5 42 238-281 3-51 (105)
173 3pgw_A U1-A; protein-RNA compl 56.1 10 0.00036 33.8 4.4 39 238-281 205-243 (282)
174 2yh0_A Splicing factor U2AF 65 55.8 14 0.00049 30.6 5.0 25 239-263 3-28 (198)
175 3pgw_S U1-70K; protein-RNA com 54.5 10 0.00035 37.2 4.3 38 238-280 100-137 (437)
176 2fc8_A NCL protein; structure 54.0 12 0.0004 28.0 3.7 26 238-266 13-38 (102)
177 2lcw_A RNA-binding protein FUS 58.8 2.8 9.4E-05 32.7 0.0 31 239-274 6-36 (116)
178 3smz_A Protein raver-1, ribonu 51.3 17 0.00059 32.4 5.0 37 239-280 94-130 (284)
179 2fc9_A NCL protein; structure 50.9 12 0.00041 28.0 3.3 27 238-267 13-39 (101)
180 2jvr_A Nucleolar protein 3; RN 50.8 11 0.00038 29.6 3.2 34 240-278 28-62 (111)
181 1fjc_A Nucleolin RBD2, protein 50.3 11 0.00037 27.9 3.0 27 238-267 14-40 (96)
182 2dit_A HIV TAT specific factor 49.2 21 0.00072 27.4 4.6 39 238-278 13-59 (112)
183 3sde_A Paraspeckle component 1 49.1 17 0.00059 32.3 4.6 37 239-280 95-131 (261)
184 3u1l_A PRE-mRNA-splicing facto 48.0 16 0.00055 33.0 4.2 40 238-279 132-177 (240)
185 2wbr_A GW182, gawky, LD47780P; 47.7 21 0.00072 27.3 4.2 36 239-279 6-41 (89)
186 2j8a_A Histone-lysine N-methyl 46.1 23 0.00078 29.4 4.4 36 241-281 3-42 (136)
187 1qm9_A Polypyrimidine tract-bi 45.8 16 0.00054 30.6 3.6 36 239-279 119-155 (198)
188 3smz_A Protein raver-1, ribonu 45.6 22 0.00074 31.7 4.7 38 238-280 182-220 (284)
189 1fje_B Nucleolin RBD12, protei 45.6 13 0.00043 30.5 2.9 29 238-266 11-40 (175)
190 3tyt_A Heterogeneous nuclear r 44.8 13 0.00045 32.2 3.0 35 240-280 123-160 (205)
191 2ghp_A U4/U6 snRNA-associated 44.6 16 0.00056 32.7 3.7 39 238-281 208-247 (292)
192 2adc_A Polypyrimidine tract-bi 43.7 23 0.0008 30.7 4.5 36 239-279 150-186 (229)
193 1fj7_A Nucleolin RBD1, protein 41.6 17 0.00059 27.1 2.9 26 239-264 16-42 (101)
194 3s6e_A RNA-binding protein 39; 41.5 34 0.0012 26.9 4.7 42 238-281 5-53 (114)
195 3he5_A Synzip1; heterodimeric 39.7 18 0.00061 23.7 2.2 21 326-346 29-49 (49)
196 3egn_A RNA-binding protein 40; 36.2 15 0.00053 29.4 1.9 27 238-267 43-69 (143)
197 2cpx_A Hypothetical protein FL 35.8 18 0.00062 27.6 2.2 26 238-263 23-49 (115)
198 2cq2_A Hypothetical protein LO 35.1 20 0.00069 28.5 2.4 36 239-279 24-61 (114)
199 1fje_B Nucleolin RBD12, protei 31.3 44 0.0015 27.0 4.0 26 239-267 98-123 (175)
200 1sjr_A Polypyrimidine tract-bi 30.0 46 0.0016 28.2 4.0 35 241-280 47-81 (164)
201 2e5i_A Heterogeneous nuclear r 30.0 65 0.0022 25.7 4.7 33 243-280 28-60 (124)
202 3zzy_A Polypyrimidine tract-bi 30.0 62 0.0021 26.2 4.6 33 243-280 31-63 (130)
203 1jmt_A Splicing factor U2AF 35 25.0 67 0.0023 24.4 3.8 20 259-280 42-62 (104)
204 1wey_A Calcipressin 1; structu 24.0 57 0.0019 25.7 3.2 29 241-269 6-36 (104)
205 2l2t_A Receptor tyrosine-prote 21.7 1.6E+02 0.0055 19.5 4.5 13 19-31 25-37 (44)
206 2dnr_A Synaptojanin-1; RRM dom 20.9 1.2E+02 0.0041 23.2 4.4 41 239-281 6-51 (91)
No 1
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=90.65 E-value=0.27 Score=36.46 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=28.7
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++||.|.|+|.+.++ +.|+++|... |.|.++.+.++
T Consensus 4 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 41 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATA---EELEAHFHGC--GSVNRVTILCD 41 (89)
T ss_dssp HHHTEEEEESCCTTCCH---HHHHHHHGGG--CCEEEEEEEES
T ss_pred CcCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEec
Confidence 35789999999998654 3567777765 66888888765
No 2
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.61 E-value=0.3 Score=38.21 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=30.1
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
+.++||.|.|+|.+.++ +.|+++|... |.|.++.+.+|-
T Consensus 9 ~~~~~lfV~~Lp~~~te---~~L~~~F~~~--G~v~~v~i~~d~ 47 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATL---DDIKEWLEDK--GQVLNIQMRRTL 47 (103)
T ss_dssp SGGGCEEEECCCTTCCH---HHHHHHHHTS--SCEEEEEEECCC
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHhhc--CCEEEEEEEECC
Confidence 46799999999998654 3567788765 678899888754
No 3
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=89.23 E-value=0.55 Score=35.22 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=28.4
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++|.|.|||...++ +.|+++|... |.|.++.+.+|
T Consensus 15 ~~~~l~v~nlp~~~~~---~~l~~~F~~~--G~i~~v~i~~~ 51 (95)
T 2ywk_A 15 ADRTVFVGNLEARVRE---EILYELFLQA--GPLTKVTICKD 51 (95)
T ss_dssp GGGEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCEEEEECCCCCCCH---HHHHHHHHhc--CCEEEEEEEEC
Confidence 5689999999998654 3567777765 66888888765
No 4
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=89.16 E-value=0.13 Score=39.18 Aligned_cols=36 Identities=11% Similarity=0.241 Sum_probs=22.1
Q ss_pred ceEEEEecCCCCCC-hhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 240 TREVLVRNVPPDPD-ESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 240 ~rTVlV~~IP~~~~-~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
|++|+|.|+|.+.+ +.|++.+++|.. .|.++.+++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~-----~v~~v~i~~d 37 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGV-----QAREVRLMRN 37 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTC-----CCSBCCSSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCC-----EeEEEEEEec
Confidence 46899999999854 455555544431 3455555443
No 5
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=89.05 E-value=0.36 Score=35.59 Aligned_cols=38 Identities=5% Similarity=0.064 Sum_probs=26.2
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++||.|.|+|.+.++ +.|+++|... |.|.++.+..+
T Consensus 2 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~~ 39 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTK---DHIMEIFSTY--GKIKMIDMPVE 39 (88)
T ss_dssp CCCCEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEeC
Confidence 34688999999998654 3466677654 56777766543
No 6
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=88.95 E-value=0.6 Score=34.32 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=27.4
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++|.|.|||.+.++ +.|+++|... |.|.++.+.++
T Consensus 5 ~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 41 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITT---AAIAAAFAPF--GRISDARVVKD 41 (87)
T ss_dssp -CEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CceEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEEec
Confidence 4678999999998654 3567777765 66888888765
No 7
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=88.92 E-value=0.59 Score=34.53 Aligned_cols=37 Identities=8% Similarity=0.174 Sum_probs=28.3
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++|.|.|+|.+.++ +.|+++|... |.|.++.+.++
T Consensus 10 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 46 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSK---KDLKDYFTKF--GEVVDCTIKMD 46 (87)
T ss_dssp CTTEEEEECCCTTCCH---HHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEeec
Confidence 4688999999998654 3567788765 67888888765
No 8
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.39 E-value=0.66 Score=34.79 Aligned_cols=37 Identities=8% Similarity=0.080 Sum_probs=28.1
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.+++|.|.|||.+.++ +.|+++|... |.|.++.+.+|
T Consensus 4 ~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~ 40 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITE---DMLRGIFEPF--GKIDNIVLMKD 40 (95)
T ss_dssp CCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEECC
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEeec
Confidence 4688999999998654 3567778765 66888888765
No 9
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.31 E-value=0.7 Score=35.33 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=30.4
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
...++|.|.|||.+.++ +.|+++|... |.|.++.+.++.
T Consensus 13 ~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~~ 51 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRD---PDLRQMFGQF--GKILDVEIIFNE 51 (103)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHHHGGGT--SCEEEEEEECCT
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecC
Confidence 45789999999998654 3577788775 678899888764
No 10
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=88.23 E-value=0.45 Score=34.86 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=27.0
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++|.|.|+|.+.++ +.|+++|... |.|.++.+.+|
T Consensus 6 ~~~~l~V~nl~~~~~~---~~l~~~f~~~--G~i~~v~i~~~ 42 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDD---KVLHAAFIPF--GDITDIQIPLD 42 (85)
T ss_dssp CSSEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEECCEE
T ss_pred CCCEEEEECCCCCCCH---HHHHHHHhcc--CCEEEEEEEEC
Confidence 5688999999998654 3567777765 56777777554
No 11
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=87.99 E-value=0.39 Score=37.10 Aligned_cols=39 Identities=8% Similarity=0.122 Sum_probs=27.0
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...||+|.|+|.+.++ +.|+++|....+-.|.++.+++|
T Consensus 8 ~m~tlfV~nL~~~~te---e~L~~~F~~~G~i~v~~v~i~~d 46 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVV---DSIMTALSPYASLAVNNIRLIKD 46 (95)
T ss_dssp CCCEEEEESCCTTCCH---HHHHHHSTTTCCCCGGGEECCCC
T ss_pred ccCEEEEeCCCCcCCH---HHHHHHHHhhCCccEEEEEEEec
Confidence 4688999999998654 35677777653334567776654
No 12
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=87.98 E-value=0.59 Score=36.91 Aligned_cols=37 Identities=16% Similarity=0.300 Sum_probs=28.3
Q ss_pred ceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 240 TREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 240 ~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
+.+|.|.|||.+.++ +.|+++|... |.|.++.+++|-
T Consensus 5 ~~~lfV~nLp~~~te---~~L~~~F~~~--G~v~~v~i~~d~ 41 (115)
T 4f25_A 5 SGNIFIKNLDKSIDN---KALYDTFSAF--GNILSCKVVCDE 41 (115)
T ss_dssp CCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEET
T ss_pred CCEEEECCCCCCCCH---HHHHHHHhcc--CCEEEEEEeecC
Confidence 467999999998654 4577788775 678888887663
No 13
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.94 E-value=0.63 Score=35.38 Aligned_cols=39 Identities=10% Similarity=0.192 Sum_probs=29.2
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
...++|.|.|||.+.++ +.|+++|... |.|.++.+..+-
T Consensus 15 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~ 53 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTK---EELEEICKAH--GTVKDLRLVTNR 53 (100)
T ss_dssp CCCSCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEECT
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEEECC
Confidence 56789999999998654 3567778765 668888887653
No 14
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.91 E-value=0.68 Score=34.01 Aligned_cols=37 Identities=8% Similarity=0.218 Sum_probs=28.8
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.+++|.|.|||.+.++ +.|+++|... |.|.++.+..+
T Consensus 4 ~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~i~~~~i~~~ 40 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTD---QDLVKLCQPY--GKIVSTKAILD 40 (85)
T ss_dssp CCCEEEEESCCTTCCH---HHHHTTSTTT--SCEEEEEEECC
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEec
Confidence 3578999999998654 4678888865 67888887765
No 15
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.60 E-value=0.5 Score=35.12 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=28.3
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.++||.|.|+|.+.++ +.|+++|... |.|.++.+.++
T Consensus 4 ~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~ 40 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTE---DELREFFSQY--GDVMDVFIPKP 40 (88)
T ss_dssp CCCEEEEESCCSSSCH---HHHHHHSTTT--SCCCEEECCSS
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHHc--CCeeEEEEecC
Confidence 4688999999998654 4577888765 66888887654
No 16
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=87.59 E-value=0.63 Score=37.99 Aligned_cols=38 Identities=11% Similarity=0.229 Sum_probs=27.7
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
+++||.|.|||.+.++ +.|.++|... |.|.++.+.++-
T Consensus 1 s~~~l~v~nlp~~~~~---~~l~~~f~~~--G~i~~v~~~~~~ 38 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQ---EEFRSLFGSI--GEIESCKLVRDK 38 (167)
T ss_dssp CCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEECT
T ss_pred CcceEEEcCCCCCCCH---HHHHHHHHhc--CCeEEEEEEeCC
Confidence 3688999999998654 3566777764 568888777653
No 17
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=87.58 E-value=0.78 Score=34.97 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=28.7
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++||.|.|||.+.++ +.|+++|... |.|.++.+..|
T Consensus 7 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 44 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDE---TEIRSFFARY--GSVKEVKIITD 44 (102)
T ss_dssp EEEEEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEEEC
Confidence 46799999999998654 3567777765 67888877665
No 18
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=87.47 E-value=0.56 Score=35.47 Aligned_cols=36 Identities=14% Similarity=0.221 Sum_probs=26.6
Q ss_pred ceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 240 TREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 240 ~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
+++|.|.|||.+.++ +.|+++|... |.|.++.+..+
T Consensus 2 ~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 37 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTE---EQILDLCSNV--GPVINLKMMFD 37 (96)
T ss_dssp CSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEECCBC
T ss_pred CcEEEEECCCCCCCH---HHHHHHHHhc--CCEEEEEEEeC
Confidence 578999999998654 3466777665 66888877665
No 19
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=87.37 E-value=0.72 Score=35.57 Aligned_cols=36 Identities=8% Similarity=0.248 Sum_probs=27.0
Q ss_pred ceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 240 TREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 240 ~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..+|.|.|||.+.++ +.|+++|... |.|.++.+++|
T Consensus 19 gt~lfV~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d 54 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQ---DELRSLFSSI--GEVESAKLIRD 54 (99)
T ss_dssp CSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEeEeeec
Confidence 467999999998654 3567777765 67888888765
No 20
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=87.37 E-value=0.87 Score=33.08 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=26.4
Q ss_pred eEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 241 REVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 241 rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.||.|.|+|.+.++ +.|+++|... |.|.++.+.++
T Consensus 2 ~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~~~i~~~ 36 (83)
T 3md1_A 2 FNLFVGDLNVNVDD---ETLRNAFKDF--PSYLSGHVMWD 36 (83)
T ss_dssp EEEEEECCCTTCCH---HHHHHHHTTS--TTEEEEEEEEC
T ss_pred eEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEEc
Confidence 57999999998654 3567778765 66888887765
No 21
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.37 E-value=0.73 Score=34.94 Aligned_cols=38 Identities=11% Similarity=0.213 Sum_probs=29.2
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..+++|.|.|||.+.++ +.|+++|... |.|.++.+.+|
T Consensus 8 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 45 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGE---TELREYFKKF--GVVTEVVMIYD 45 (99)
T ss_dssp SSCCEEEEESCCSSCCH---HHHHHHHSSS--SCEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEeC
Confidence 35689999999998654 3577788775 67888888765
No 22
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=87.33 E-value=0.77 Score=36.21 Aligned_cols=38 Identities=8% Similarity=0.102 Sum_probs=29.3
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
..+||.|.|+|.+.++ +.|+++|... |.|.++.+.+|-
T Consensus 5 p~~~lfV~nL~~~~te---~~L~~~F~~~--G~i~~v~i~~d~ 42 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRE---TFLKDMCRKY--GEVEEVEILLHP 42 (110)
T ss_dssp CCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEECT
T ss_pred CCcEEEEECCCCCCCH---HHHHHHHHhc--CCeeEEEEEECC
Confidence 4688999999998654 4567788765 778898887664
No 23
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=87.13 E-value=0.95 Score=34.67 Aligned_cols=38 Identities=11% Similarity=0.055 Sum_probs=28.8
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++||.|.|||.+.++ +.|+++|... |.|.++.+..|
T Consensus 21 ~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~~ 58 (106)
T 1p27_B 21 VEGWILFVTGVHEEATE---EDIHDKFAEY--GEIKNIHLNLD 58 (106)
T ss_dssp TTBEEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHhcc--CCeEEEEEEec
Confidence 56789999999998654 3567777765 67888887755
No 24
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.95 E-value=0.6 Score=33.46 Aligned_cols=35 Identities=6% Similarity=0.096 Sum_probs=24.8
Q ss_pred eEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 241 REVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 241 rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
+||.|.|+|.+.++ +.|+++|... |.|.++.+.++
T Consensus 1 ~~l~v~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~~ 35 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQ---EGLREYFGQF--GEVKECLVMRD 35 (77)
T ss_dssp CCEEEESCCSSCCS---HHHHHHHTTT--SCCCCEEEECC
T ss_pred CEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEecC
Confidence 46999999998543 2466777765 56778877654
No 25
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=86.92 E-value=0.9 Score=35.76 Aligned_cols=37 Identities=11% Similarity=-0.110 Sum_probs=28.0
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEc
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVN 279 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~ 279 (348)
..+++|.|.|+|.+..+ +.|+++|... |.|.++.+.+
T Consensus 19 ~ps~~l~V~NLp~~~te---~~L~~lF~~f--G~V~~v~i~~ 55 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVE---ADLVEALQEF--GPISYVVVMP 55 (100)
T ss_dssp CCCSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEET
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHhcc--CCEEEEEEEc
Confidence 46799999999998554 3567777765 7788888764
No 26
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.87 E-value=0.81 Score=34.76 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=30.0
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
..+++|.|.|+|.+.++ +.|+++|....||.|.++.+.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~g~g~v~~~~~~~g~ 53 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSE---EMIEKEFNNIKPGAVERVKKIRDY 53 (99)
T ss_dssp SCCCEEEEESCCTTCCH---HHHHHHHHTTSTTCEEEEEECSSE
T ss_pred CCcCEEEEeCCCCCCCH---HHHHHHHHhcCCcceEEEEEeCCe
Confidence 35789999999998654 346667776656788888776554
No 27
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.83 E-value=0.63 Score=34.83 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=28.1
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++|.|.|||.+..+ +.|+++|... |.|.++.+..+
T Consensus 15 ~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~ 51 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTN---NDLYRIFSKY--GKVVKVTIMKD 51 (94)
T ss_dssp CTTSEEEESCCTTSCH---HHHHHHTTTT--SCEEEEEECCC
T ss_pred CCCEEEEECCCCCCCH---HHHHHHHHhc--CCeEEEEEEeC
Confidence 4688999999998654 3577788765 66888888654
No 28
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.78 E-value=0.77 Score=34.32 Aligned_cols=38 Identities=11% Similarity=-0.032 Sum_probs=27.6
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..+++|.|.|||.+.++ +.|+++|... |.|.++.+.++
T Consensus 13 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~ 50 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTE---RDLREVFSKY--GPIADVSIVYD 50 (95)
T ss_dssp CGGGCEEEESCCSSCCH---HHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHhc--CCeeEEEEEEc
Confidence 35788999999998554 3466777664 56888877654
No 29
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.77 E-value=0.57 Score=35.60 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=30.9
Q ss_pred cceEEEEecCCCCC-ChhHHHHHHhhhcccCCCceeEEEEEcChh
Q 018945 239 TTREVLVRNVPPDP-DESVTQLVEHFFLVNHPDHYLTHQVVNNAN 282 (348)
Q Consensus 239 s~rTVlV~~IP~~~-~~~l~~~l~~~f~~~~p~~v~~v~v~~d~~ 282 (348)
..++|.|.|+|.+. ++.|++.|.++|... |.|.++.+..|-.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~--G~v~~v~i~~~~~ 50 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARH--GKVKSVELSPHTD 50 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECSCCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhcccc--CcEEEEEEEeCCC
Confidence 35789999999984 456665556888765 6788998886543
No 30
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.63 E-value=0.7 Score=36.20 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=28.2
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...+||.|.|||.+.++ +.|+++|... |.|.++.+.++
T Consensus 15 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 52 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTD---ASLRKYFEGF--GDIEEAVVITD 52 (116)
T ss_dssp CSSSEEEEECCCSSCCH---HHHHHHHHTT--SCEEEEEESCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeeEEEEEEc
Confidence 45789999999998654 3566777665 56888888765
No 31
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.61 E-value=0.71 Score=34.95 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=27.8
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
..++||.|.|||.+.++ +.|+++|... |.|.++.+.+|-
T Consensus 6 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~ 44 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSE---EDLEKLFSAY--GPLSELHYPIDS 44 (99)
T ss_dssp CSCEEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCCCT
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEEecC
Confidence 35689999999998654 3466677654 567788776553
No 32
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=86.57 E-value=0.9 Score=34.88 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=27.6
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++|.|.|||...++ +.|+++|... |.|.++.+.++
T Consensus 28 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 64 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSD---ADIQELFAEF--GTLKKAAVHYD 64 (107)
T ss_dssp CSEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEC
Confidence 4688999999998654 3567777764 66888877755
No 33
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.57 E-value=0.78 Score=35.69 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=28.4
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.++||.|.|||.+.++ +.|+++|... |.|.++.+.++
T Consensus 14 ~~~~l~V~nlp~~~~~---~~l~~~f~~~--G~i~~~~i~~~ 50 (114)
T 2do0_A 14 LGSTVFVANLDYKVGW---KKLKEVFSMA--GVVVRADILED 50 (114)
T ss_dssp CCSCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEC
Confidence 4688999999998654 3577788765 67888888765
No 34
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=86.20 E-value=0.98 Score=34.54 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=28.7
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.+++|.|.|||.+.++ +.|+++|... |.|.++.+.++
T Consensus 14 ~~~~l~v~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 50 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSE---EDVLRLFQPF--GVIDECTVLRG 50 (105)
T ss_dssp CCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEC
Confidence 4689999999998654 3577788765 66888888766
No 35
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.13 E-value=0.93 Score=34.61 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=29.7
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..+++|.|.|||.+.++ +.|+++|... |.|.++.+.++
T Consensus 13 ~~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~~ 50 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRE---TDLQELFRPF--GSISRIYLAKD 50 (103)
T ss_dssp SSSEEEEEESCCTTCCH---HHHHTTSTTT--CCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCeEEEEEeec
Confidence 35789999999998654 4678888875 67888888765
No 36
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.10 E-value=0.79 Score=34.61 Aligned_cols=37 Identities=8% Similarity=0.161 Sum_probs=26.5
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.+++|.|.|||.+.++ +.|+++|... |.|.++.+.++
T Consensus 4 ~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 40 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTE---ETLKGVFSKV--GAIKSCTISKK 40 (98)
T ss_dssp CCCCEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEec
Confidence 3578999999998654 3566677655 56778777654
No 37
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.86 E-value=0.92 Score=34.63 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=27.9
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++|+|.|||.+.++ +.|+++|... |.|.++.+.+|
T Consensus 14 ~~~~l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 50 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTE---QDLKEYFSTF--GEVLMVQVKKD 50 (103)
T ss_dssp CCCCEEEESCCSSCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCEEEEEcCCCcCCH---HHHHHHHHhc--CCeEEEEEEec
Confidence 4688999999998654 3567778765 56888877765
No 38
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=85.82 E-value=1.1 Score=35.00 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=28.8
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...+||.|.|||.+.++ +.|+++|... |.|.++.+.++
T Consensus 13 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 50 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITT---EDIKAAFAPF--GRISDARVVKD 50 (115)
T ss_dssp TTCEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEc
Confidence 35789999999998654 3567777765 66888888766
No 39
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.76 E-value=0.99 Score=34.45 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=29.6
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...++|.|.|||.+.++ +.|+++|... |.|.++.+..+
T Consensus 13 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 50 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDD---ERLRKAFSPF--GTITSAKVMME 50 (103)
T ss_dssp SSCCCEEEECCCTTCCH---HHHHHTTTTT--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEcC
Confidence 45789999999998654 4578888865 66888888765
No 40
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.66 E-value=0.85 Score=35.58 Aligned_cols=38 Identities=13% Similarity=0.228 Sum_probs=28.6
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++||.|.|||.+.++ +.|+++|... |.|.++.+..|
T Consensus 23 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 60 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRP---RDLEDFFSAV--GKVRDVRIISD 60 (114)
T ss_dssp HHHTEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEeEEEEEec
Confidence 45689999999998654 3577788765 67888887654
No 41
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=85.61 E-value=0.89 Score=39.64 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=28.4
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...+||.|.|||.+.++ +.|+++|... |.|.++.+++|
T Consensus 13 ~p~~tlfVgnLp~~~te---~~L~~~F~~~--G~I~~v~i~~d 50 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTE---AMLYEKFSPA--GPILSIRVCRD 50 (213)
T ss_dssp --CCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhh--CCEEEEEEecc
Confidence 35689999999998654 3567788776 67888888765
No 42
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.39 E-value=0.88 Score=34.76 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=27.5
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...++|.|.|||.+.++ +.|+++|... |.|.++.+.+|
T Consensus 13 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 50 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTE---VLILQLFSQI--GPCKSCKMITE 50 (103)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHHHHHHH--SCEEEEEEECC
T ss_pred CCCCEEEEeCCCccCCH---HHHHHHHHhc--CCEeEEEEEec
Confidence 35689999999998543 3456666654 56888888775
No 43
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=85.34 E-value=0.97 Score=35.42 Aligned_cols=38 Identities=11% Similarity=0.187 Sum_probs=28.7
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
-..+||.|.|||.+.++ +.|+++|... |.|.++.+.+|
T Consensus 38 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~~ 75 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTD---TDLASTFLPF--GNVISAKVFID 75 (118)
T ss_dssp CCSEEEEEECSCTTCCH---HHHHHHTTTS--CEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEeC
Confidence 34689999999998654 4577888765 67888877654
No 44
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=85.21 E-value=1 Score=34.78 Aligned_cols=38 Identities=8% Similarity=0.068 Sum_probs=28.4
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++||.|.|||.+.++ +.|+++|... |.|.++.+..+
T Consensus 24 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 61 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQE---DEIQEKFCDY--GEIKNIHLNLD 61 (110)
T ss_dssp TTBEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEECCBC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEec
Confidence 56799999999998654 3567777765 66888877654
No 45
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=85.11 E-value=0.76 Score=37.42 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=27.3
Q ss_pred eEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 241 REVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 241 rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
|||.|.|||.+.++ +.|+++|... |.|.++.+.++-
T Consensus 1 R~l~V~nlp~~~t~---~~l~~~f~~~--G~i~~v~i~~~~ 36 (166)
T 3md3_A 1 RVLYVGNLDKAITE---DILKQYFQVG--GPIANIKIMIDK 36 (166)
T ss_dssp CEEEEEEEETTCCH---HHHHHHHGGG--SCEEEEEEECCC
T ss_pred CEEEECCCCCcCCH---HHHHHHHHhc--CCeEEEEEEECC
Confidence 68999999998654 3567788765 568888887654
No 46
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=85.08 E-value=1 Score=33.41 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=26.8
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.+++|.|.|||.+..+ +.|+++|... |.|.++.+.++
T Consensus 7 ~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~v~~~~i~~~ 43 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTW---KMLKDKFNEC--GHVLYADIKME 43 (92)
T ss_dssp SCCEEEECSCCTTCCH---HHHHHHHHTT--SCEEEEEEEES
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEcc
Confidence 4688999999998554 3566777665 66788877653
No 47
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.07 E-value=0.92 Score=34.63 Aligned_cols=37 Identities=8% Similarity=-0.017 Sum_probs=27.6
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..+||.|.|||.+.++ +.|+++|... |.|.++.+..|
T Consensus 12 ~~~~l~V~nLp~~~t~---~~l~~~f~~~--G~i~~v~i~~~ 48 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSP---DSLRRVFEKY--GRVGDVYIPRE 48 (103)
T ss_dssp CCCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEECCBC
T ss_pred CCeEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEeC
Confidence 4688999999998654 3567777765 66888877654
No 48
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=85.00 E-value=1.2 Score=34.51 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=28.2
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++|.|.|||.+.++ +.|+++|... |.|.++.+..|
T Consensus 14 ~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~~~i~~~ 50 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSW---QDLKDHMREA--GDVCYADVYRD 50 (108)
T ss_dssp CCCEEEEESCCSSCCH---HHHHHHHGGG--SCEEEEEEETT
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEeEEEEecC
Confidence 4678999999998654 4567788765 66888888775
No 49
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=84.97 E-value=0.95 Score=37.27 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=26.8
Q ss_pred ceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 240 TREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 240 ~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
++||.|.|+|.+.++ +.|+++|... |.|.++.+.++
T Consensus 3 ~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~ 38 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSE---KDLRELFEQY--GAVYEINVLRD 38 (175)
T ss_dssp CEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEEEE
T ss_pred ceEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEec
Confidence 588999999998654 3566777765 56888877655
No 50
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.91 E-value=1.2 Score=34.72 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=29.2
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
-.+++|.|.|+|.+.++ +.|+++|... |.|.++.+.++
T Consensus 13 ~p~~~l~V~nLp~~~te---~~L~~~F~~f--G~v~~v~i~~~ 50 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTE---TEVIALGLPF--GKVTNILMLKG 50 (101)
T ss_dssp SCCSEEEEESCCTTCCH---HHHHHTTTTT--SCEEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEECC
Confidence 35789999999998654 4577888765 77888888764
No 51
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=84.91 E-value=1.2 Score=34.89 Aligned_cols=37 Identities=11% Similarity=-0.120 Sum_probs=28.1
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.+++|+|.|+|.+.++ +.|+++|... |.|.++.+.++
T Consensus 14 p~~~l~V~nLp~~~te---~~L~~~F~~f--G~V~~v~i~~~ 50 (104)
T 1wex_A 14 VSPVVHVRGLCESVVE---ADLVEALEKF--GTICYVMMMPF 50 (104)
T ss_dssp CCSEEEEESCCSSCCH---HHHHHHHTTT--SCEEEEEEETT
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEECC
Confidence 4689999999998654 3567788765 67888887653
No 52
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=84.86 E-value=0.89 Score=35.52 Aligned_cols=39 Identities=10% Similarity=0.218 Sum_probs=28.1
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
...++|+|.|||.+.++ +.|+++|... |.|.++.+.+|-
T Consensus 23 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~ 61 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGD---QDLLQMFMPF--GNVVSAKVFIDK 61 (115)
T ss_dssp STTCCEEEESCCSSCCH---HHHHHHHGGG--SCCSEEEEEECS
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEECC
Confidence 34688999999998654 3567777765 567788776653
No 53
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=84.77 E-value=0.94 Score=35.38 Aligned_cols=38 Identities=5% Similarity=0.075 Sum_probs=27.7
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
-..+||.|.|+|.+.++ +.|+++|... |.|.++.+.+|
T Consensus 23 ~~~~~lfV~nLp~~~te---~~L~~~F~~~--G~i~~v~i~~~ 60 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQ---EGLREYFGQF--GEVKECLVMRD 60 (109)
T ss_dssp ---CCEEEESCCTTCCH---HHHHHHHTTT--SCEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHcc--CCeEEEEEEEC
Confidence 34689999999998654 3577788765 67888888765
No 54
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.76 E-value=1.1 Score=32.79 Aligned_cols=37 Identities=19% Similarity=0.108 Sum_probs=27.4
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEc
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVN 279 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~ 279 (348)
...+||.|.|+|.+.++ +.|+++|... |.|.++.+.+
T Consensus 10 ~~~~~l~V~~l~~~~t~---~~l~~~f~~~--G~i~~~~~~~ 46 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITE---TDLRNHFYQF--GEIRTITVVQ 46 (85)
T ss_dssp SSCCCEEEECCTTTSCH---HHHHHHHHTT--SCEEEEEEEG
T ss_pred CCccEEEEcCCCCCCCH---HHHHHHHHhC--CCEeEEEEEC
Confidence 35688999999998554 3566777765 5688888876
No 55
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.76 E-value=0.89 Score=34.38 Aligned_cols=37 Identities=14% Similarity=0.318 Sum_probs=26.2
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCcee-EEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYL-THQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~-~v~v~~d 280 (348)
.++||.|.|||.+.++ +.|+++|... |.|. ++.+++|
T Consensus 8 ~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~~v~i~~~ 45 (99)
T 2div_A 8 MAASLWMGDLEPYMDE---NFISRAFATM--GETVMSVKIIRN 45 (99)
T ss_dssp SSSEEEECSCCTTCCH---HHHHHHHHHT--TCCCCEEEEEEC
T ss_pred CccEEEEeCCCCCCCH---HHHHHHHHHh--CCcceEEEEeec
Confidence 4688999999998554 3456666654 5566 7777665
No 56
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.67 E-value=1.1 Score=33.58 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=28.2
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
..+++|.|.|||.+.++ +.|+++|... |.|.++.+.++.
T Consensus 8 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~v~~v~~~~~~ 46 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTN---QELRAKFEEY--GPVIECDIVKDY 46 (92)
T ss_dssp CSSEEEEEESCCSSCCH---HHHHHHHHTT--SCCCEEEECSSE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEECCE
Confidence 35689999999998654 3566677665 567888877663
No 57
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.61 E-value=0.76 Score=34.99 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=25.6
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.+++|.|.|||.+.++ +.|+++|... |.|.++.+.++
T Consensus 11 ~~~~l~v~nLp~~~t~---~~l~~~f~~~--G~i~~v~i~~~ 47 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNE---QSLEQVFSKY--GQISEVVVVKD 47 (102)
T ss_dssp CCSEEEEESCCTTCCH---HHHHHHHHHH--SCCCEEEECCC
T ss_pred CCCEEEEECCCCCCCH---HHHHHHHHhc--CCeEEEEEEeC
Confidence 4688999999998543 2455566554 55777777664
No 58
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=84.58 E-value=1.3 Score=34.55 Aligned_cols=38 Identities=18% Similarity=0.168 Sum_probs=28.4
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
.++||.|.|+|.+..+ +.|+++|... |.|.++.+.++-
T Consensus 7 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~~~ 44 (115)
T 3lqv_A 7 VNRILYIRNLPYKITA---EEMYDIFGKY--GPIRQIRVGNTP 44 (115)
T ss_dssp CCSEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEEEECST
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEeeCC
Confidence 4688999999998654 3467777765 678888887653
No 59
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.50 E-value=1.1 Score=36.34 Aligned_cols=38 Identities=18% Similarity=0.168 Sum_probs=28.9
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
-.+++|.|.|+|.+.++ +.|+++|... |.|.++.+.++
T Consensus 29 ~ps~~LfVgNLp~~vte---~dL~~lF~~f--G~V~~v~i~~~ 66 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTE---GEVISLGLPF--GKVTNLLMLKG 66 (119)
T ss_dssp SCCSEEEEESCCTTCCH---HHHHHHHTTT--SCCCEEEEEGG
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEeCC
Confidence 35789999999998654 3567788765 77888888764
No 60
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.39 E-value=0.9 Score=36.05 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=26.9
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.+++|.|.|+|.+.++ +.|+++|... |.|.++.++++
T Consensus 15 ~~~~LfV~nLp~~vte---~dL~~lF~~f--G~V~~v~i~~~ 51 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTE---GEVISLGLPF--GKVTNLLMLKG 51 (105)
T ss_dssp CCCEEEECSCCTTSCH---HHHHHHHHHH--CCEEEEEEETT
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEcC
Confidence 4578999999998553 2455666654 67889988765
No 61
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.37 E-value=1.1 Score=34.34 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=29.4
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
...+||.|.|||.+.++ +.|+++|... | |.++.+.++-
T Consensus 13 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G-i~~v~i~~~~ 50 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTE---ESIKEFFRGL--N-ISAVRLPREP 50 (104)
T ss_dssp SSCEEEEEESCCSSCCH---HHHHHHTTTS--C-EEEEECCBCS
T ss_pred CCCCEEEEeCCCCcCCH---HHHHHHHHHC--C-ceEEEEecCC
Confidence 45689999999998654 4578888875 6 8888887653
No 62
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.33 E-value=1.3 Score=32.83 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=28.0
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
.++||.|.|||.+.++ +.|+++|... |.|.++.+.++.
T Consensus 7 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~~~~g~ 44 (90)
T 2dnq_A 7 GMVKLFIGNLPREATE---QEIRSLFEQY--GKVLECDIIKNY 44 (90)
T ss_dssp CCEEEEEESCCSSCCH---HHHHHHHHTS--SCEEEEEEETTE
T ss_pred CCeEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEECCE
Confidence 4688999999998654 3567777765 668888876544
No 63
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=84.29 E-value=0.96 Score=33.98 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=28.6
Q ss_pred cceEEEEecCCCCC-ChhHHHHHHhhhcccCCCceeEEEEE
Q 018945 239 TTREVLVRNVPPDP-DESVTQLVEHFFLVNHPDHYLTHQVV 278 (348)
Q Consensus 239 s~rTVlV~~IP~~~-~~~l~~~l~~~f~~~~p~~v~~v~v~ 278 (348)
.+++|.|.|+|.+. ++.+++.|.++|... |.|.++.+.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~--G~i~~v~i~ 45 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRF--GQILDILVS 45 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGG--SCEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhC--CCEEEEEEE
Confidence 46889999999984 455665666888876 667787765
No 64
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.27 E-value=0.96 Score=34.59 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=28.4
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
-..++|.|.|||.+.++ +.|+++|... |.|.++.+.+|-
T Consensus 13 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~ 51 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSE---PLLWELFLQA--GPVVNTHMPKDR 51 (105)
T ss_dssp CTTTEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCBCS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecC
Confidence 35689999999998654 3567777765 668888777653
No 65
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.23 E-value=1.1 Score=34.29 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=26.3
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcc-cCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLV-NHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~-~~p~~v~~v~v~~d 280 (348)
.+++|.|.|||.+.++ +.|+++|.. . |.|.++.+.+|
T Consensus 8 ~~~~l~V~nLp~~~t~---~~l~~~F~~~~--G~v~~v~i~~~ 45 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDD---GMLYEFFVKVY--PSCRGGKVVLD 45 (104)
T ss_dssp CCCCEEEECCCTTCCH---HHHHHHHHHHC--TTEEEEEEEEC
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHHhC--CCeEEEEEEEC
Confidence 4578999999998554 345666665 4 56788877765
No 66
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=84.16 E-value=0.9 Score=35.67 Aligned_cols=37 Identities=14% Similarity=0.058 Sum_probs=29.3
Q ss_pred cceEEEEecCCC-CCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPP-DPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~-~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.+++|.|.|+|. +.++ +.|+++|... |.|.++.++++
T Consensus 14 p~~~l~V~nLp~~~~te---~dL~~lF~~f--G~V~~v~i~~~ 51 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLR---YQLLQLVEPF--GVISNHLILNK 51 (102)
T ss_dssp CCCEEEEESCCCSSSHH---HHHHTTTGGG--SCEEEEEECSS
T ss_pred CCCEEEEeCCCCCcCCH---HHHHHHHHhc--CCEEEEEEEcC
Confidence 468899999999 7544 4578888876 77999988764
No 67
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=84.12 E-value=0.9 Score=34.81 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=28.2
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...++|.|.|||...++ +.|+++|... |.|.++.+.++
T Consensus 13 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 50 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQ---REIRELFSTF--GELKTVRLPKK 50 (107)
T ss_dssp SCCCCEEEESCCTTCCH---HHHHHHHHTT--SCEEEEECCCC
T ss_pred CCCCEEEEeCCCCcCCH---HHHHHHHHcc--CCeEEEEEecC
Confidence 45789999999998654 3466677664 56888888766
No 68
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=84.05 E-value=1.5 Score=33.40 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=29.3
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
...++|.|.|||.+.++ +.|+++|... + |.++.+.+|-
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--g-i~~v~i~~~~ 50 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQ---GDIDAIFKDL--S-IRSVRLVRDK 50 (103)
T ss_dssp SSCEEEEEESCCTTCCH---HHHHHHTTTS--C-EEEEEEEECS
T ss_pred CCCeEEEEeCCCCCCCH---HHHHHHHHhC--C-ceEEEEeecC
Confidence 35789999999998654 4578888875 5 8888887653
No 69
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=83.99 E-value=1.3 Score=32.30 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=27.1
Q ss_pred ceEEEEecCCCCCChh---HHHHHHhhhcccCCCceeEEEEEc
Q 018945 240 TREVLVRNVPPDPDES---VTQLVEHFFLVNHPDHYLTHQVVN 279 (348)
Q Consensus 240 ~rTVlV~~IP~~~~~~---l~~~l~~~f~~~~p~~v~~v~v~~ 279 (348)
++||.|.|+|...++. ..+.|+++|... |.|.++.+.+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~i~~v~i~~ 41 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYPE 41 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTT--CCEEEEECCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhc--CCeEEEEecC
Confidence 3689999999975321 246688888775 6688877653
No 70
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.91 E-value=0.8 Score=34.37 Aligned_cols=37 Identities=19% Similarity=0.380 Sum_probs=26.0
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEE-EEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTH-QVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v-~v~~d 280 (348)
.+++|.|.|||.+.++ +.|+++|... |.|.++ .+.+|
T Consensus 4 ~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~~~~i~~~ 41 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDE---KLLYDTFSAF--GVILQTPKIMRD 41 (96)
T ss_dssp CCCEEEEECCCTTCCH---HHHHHHHHTT--SCBSSCCEECCC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEEEc
Confidence 4688999999998553 3466677654 556676 67665
No 71
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.86 E-value=0.92 Score=33.76 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=27.3
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
..++|.|.|+|.+.++ +.|+++|... |.|.++.+.++.
T Consensus 8 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~~~~~~~~ 45 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTS---QELRSLFERR--GRVIECDVVKDY 45 (90)
T ss_dssp CSCCEEEESCCTTCCH---HHHHHHHHHH--SCEEEEEECSSC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHcC--CCEEEEEEECCE
Confidence 4688999999998553 3456666654 568888887664
No 72
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.85 E-value=0.93 Score=34.99 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=27.2
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..+||.|.|||.+.++ +.|+++|... |.|.++.+.+|
T Consensus 14 ~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 50 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEE---EALGEVLQQF--GDLKYVRVVLH 50 (111)
T ss_dssp CCCCEEEESCCTTCCH---HHHHHHHHTT--SCEEEEECCBC
T ss_pred CCCEEEEECCCCCCCH---HHHHHHHHhc--CCeEEEEEEec
Confidence 4688999999998654 3466677654 56788877755
No 73
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.77 E-value=0.89 Score=34.86 Aligned_cols=38 Identities=5% Similarity=0.154 Sum_probs=28.0
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...++|.|.|||.+.++ +.|+++|... |.|.++.+.++
T Consensus 14 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~~ 51 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQ---ETLRSYFSQY--GEVVDCVIMKD 51 (105)
T ss_dssp SSSSEECCBSCCTTCCH---HHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEeeC
Confidence 35689999999998654 3566777665 66888877765
No 74
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.73 E-value=1.4 Score=34.16 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=29.5
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...++|.|.|||.+.++ +.|+++|... |.|.++.+.+|
T Consensus 23 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~~ 60 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDE---QELENMLKPF--GQVISTRILRD 60 (114)
T ss_dssp CCTTEEEEESCCTTCCH---HHHHHTTTTT--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEEC
Confidence 45689999999998654 4578888765 67888888765
No 75
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.71 E-value=0.82 Score=34.85 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=26.5
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..+||.|.|||.+..+ +.|+++|... |.|.++.+.++
T Consensus 7 ~~~~l~V~nlp~~~~~---~~l~~~f~~~--G~i~~~~i~~~ 43 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATE---EQLKDIFSEV--GPVVSFRLVYD 43 (104)
T ss_dssp HHSCEEEESCCTTSCH---HHHHHHHHTT--SCCSEEEEEEE
T ss_pred CccEEEEeCCCCcCCH---HHHHHHHHhc--CCeeEEEEEeC
Confidence 5689999999998543 3466677654 56777777654
No 76
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.66 E-value=1.1 Score=34.98 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=29.8
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
...++|.|.|+|.+.++ +.|+++|... |.|.++.+.+|.
T Consensus 27 ~~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~~ 65 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRD---PDLRQMFGQF--GKILDVEIIFNE 65 (109)
T ss_dssp TCCCEEEEESCCTTCCH---HHHHHHGGGT--CCCSCEEECCBT
T ss_pred CCCCEEEEECCCCcCCH---HHHHHHHHhc--CCEEEEEEEECC
Confidence 45789999999998654 4577788775 668888887663
No 77
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.41 E-value=0.77 Score=34.95 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=27.4
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++|.|.|||.+.++ +.|+++|... |.|.++.+.+|
T Consensus 11 ~~~~l~V~nLp~~~t~---~~l~~~f~~~--G~i~~v~i~~~ 47 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDD---KVLHAAFIPF--GDITDIQIPLD 47 (102)
T ss_dssp CCSCEEEESCCSSCCH---HHHHHHHTTT--SCCCCEECCCC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHhhcc--CCEEEEEEEec
Confidence 4688999999998654 3567777765 66777777655
No 78
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=83.28 E-value=1.4 Score=34.27 Aligned_cols=37 Identities=11% Similarity=0.095 Sum_probs=28.1
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.+++|.|.|||...++ +.|+++|... |.|.++.+.++
T Consensus 25 ~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~ 61 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITE---DMLRGIFEPF--GRIESIQLMMD 61 (108)
T ss_dssp SCEEEEEECCCSSCCH---HHHHHHHTTT--SCEEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEc
Confidence 4689999999998654 3577788765 66888877755
No 79
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=83.20 E-value=1.4 Score=34.89 Aligned_cols=38 Identities=5% Similarity=0.207 Sum_probs=28.2
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
.++||.|.|||.+.++ +.|+++|... |.|.++.+..|-
T Consensus 6 ~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~ 43 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNE---KMLKAVFGKH--GPISEVLLIKDR 43 (116)
T ss_dssp SCCEEEEECCTTTCCH---HHHHHHHHTS--SCCSEEEEECST
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEECC
Confidence 4688999999998654 3567777765 568888887754
No 80
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=83.04 E-value=1 Score=36.86 Aligned_cols=36 Identities=8% Similarity=0.194 Sum_probs=27.6
Q ss_pred ceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 240 TREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 240 ~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
++||.|.|||.+.++ +.|.++|... |.|.++.+.++
T Consensus 3 ~~~l~v~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 38 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTE---DNLREYFGKY--GTVTDLKIMKD 38 (167)
T ss_dssp GGEEEECSCCTTCCH---HHHHHHHTTT--CCEEEEECCCC
T ss_pred CcEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEEC
Confidence 578999999998654 3567788765 66888887765
No 81
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=82.94 E-value=1.4 Score=33.35 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=28.2
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++|.|.|||.+.++ +.|+++|... |.|.++.+.++
T Consensus 14 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~~~~~ 50 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITE---EEMRKLFEKY--GKAGEVFIHKD 50 (99)
T ss_dssp CTTEEEEESCCTTCCH---HHHHHHTSTT--CCCSEEEEETT
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHhhc--CCeEEEEEecC
Confidence 4688999999998654 4577888775 56788887754
No 82
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=82.78 E-value=0.92 Score=34.76 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=25.9
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...++|.|.|||.+.++ +.|+++|... |.|.++.+.+|
T Consensus 11 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 48 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDE---KDLKPLFEEF--GKIYELTVLKD 48 (106)
T ss_dssp TTCEEEEEESCCTTCCH---HHHHHHHHHH--SCCCEEECCCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEec
Confidence 45789999999998553 2455566554 45777777654
No 83
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=82.73 E-value=0.98 Score=36.98 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=26.7
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
+++||.|.|||.+.++ +.|.++|... |.|.++.+.++
T Consensus 2 ~~~~l~v~nlp~~~~~---~~l~~~f~~~--G~i~~v~i~~~ 38 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTD---RELYALFRAI--GPINTCRIMRD 38 (168)
T ss_dssp CCSEEEEECCCTTCCH---HHHHHHHHTT--SCEEEEECCEE
T ss_pred CccEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEEe
Confidence 3688999999998654 3466777665 56777777654
No 84
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.64 E-value=1.5 Score=33.75 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=27.5
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...++|.|.|||.+.++ +.|+++|... |.|.++.+..+
T Consensus 20 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~v~~~~i~~~ 57 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRT---KDIEDVFYKY--GAIRDIDLKNR 57 (109)
T ss_dssp CCSSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEC
Confidence 35689999999998654 3567777765 56778777543
No 85
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=82.62 E-value=1 Score=34.46 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=26.7
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
.+++|.|.|||.+.++ +.|+++|... |.|.++.+.+++
T Consensus 10 ~~~~l~V~nl~~~~t~---~~l~~~F~~~--G~i~~v~~~~~~ 47 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTE---EILEKAFSQF--GKLERVKKLKDY 47 (103)
T ss_dssp CCCCEEEECCCTTCCH---HHHHHHHHHH--SCEEEEEECSSC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEECCE
Confidence 4688999999998543 3455666554 567888777654
No 86
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=82.45 E-value=1.3 Score=35.01 Aligned_cols=38 Identities=11% Similarity=0.055 Sum_probs=28.0
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++||.|.|||.+.++ +.|+++|... |.|.++.+..+
T Consensus 20 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 57 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATE---EDIHDKFAEY--GEIKNIHLNLD 57 (126)
T ss_dssp SSSEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEECCBC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEec
Confidence 45789999999998654 3566777654 66888877655
No 87
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=82.27 E-value=1.7 Score=36.61 Aligned_cols=37 Identities=8% Similarity=0.170 Sum_probs=28.3
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.+++|.|.|||.+.++ +.|.++|... |.|.++.+.++
T Consensus 12 ~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~ 48 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTD---ESLRSHFEQW--GTLTDCVVMRD 48 (196)
T ss_dssp GGGEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhC--CCEEEEEEEEc
Confidence 5789999999998654 3567777765 66888888765
No 88
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=82.22 E-value=1.3 Score=33.32 Aligned_cols=38 Identities=16% Similarity=0.080 Sum_probs=27.8
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..+++|.|.|||.+.++ +.|+++|... |.|.++.+..+
T Consensus 15 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~~~~~ 52 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSL---AALAREFDRF--GSIRTIDHVKG 52 (97)
T ss_dssp CCCSCEEEECCCSSCCH---HHHHHHHHTT--SCEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEeCC
Confidence 34688999999998654 3567777765 66888877654
No 89
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=82.16 E-value=1.5 Score=34.75 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=27.3
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.+++|.|.|||.+.++ +.|+++|... |.|.++.+.++
T Consensus 34 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~v~i~~~ 70 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSD---ADIQELFAEF--GTLKKAAVDYD 70 (124)
T ss_dssp SCEEEEEESCCSSCCH---HHHHHHHHTT--SCCSEEEEECC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeeEEEEEEC
Confidence 4689999999998554 3466777664 56788887765
No 90
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.16 E-value=1.4 Score=34.36 Aligned_cols=37 Identities=8% Similarity=0.220 Sum_probs=28.4
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++|.|.|||.+.++ +.|+++|... |.|.++.+.+|
T Consensus 26 ~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~ 62 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTE---ESLRNYYEQW--GKLTDCVVMRD 62 (116)
T ss_dssp HHTEEEEECCTTCCCH---HHHHHHHTSS--CCCSEEEEECC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEEC
Confidence 4689999999998654 3577788765 66888888765
No 91
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=82.12 E-value=0.69 Score=34.36 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=24.9
Q ss_pred eEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 241 REVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 241 rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
|||.|.|||.+.++ +.|+++|... |.|.++.+.+|
T Consensus 2 ~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 36 (90)
T 2ki2_A 2 RNIYVGNLVYSATS---EQVKELFSQF--GKVFNVKLIYD 36 (90)
T ss_dssp EEEEEEEECTTSSH---HHHTTTHHHH--TCCSEEEECCC
T ss_pred cEEEECCCCCCCCH---HHHHHHHHhc--CCEEEEEEEEc
Confidence 68999999998654 3466677654 55777777654
No 92
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=82.12 E-value=1.2 Score=35.25 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=27.8
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..+||.|.|||.+.++ +.|+++|... |.|.++.+.+|
T Consensus 35 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 71 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTA---QDLEAHFSSC--GSINRITILCD 71 (124)
T ss_dssp HHTEEEEEEECTTCCH---HHHHHHHHTT--SCEEEEEEEEE
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEec
Confidence 4689999999998554 3567777765 67888887765
No 93
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=81.95 E-value=1.5 Score=32.97 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=28.0
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
....||.|.|+|.+.++ +.|+++|... |.|.++.+.++
T Consensus 9 ~~~~~l~V~~Lp~~~te---~~L~~~F~~~--G~i~~v~i~~~ 46 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTA---EELQQFFCQY--GEVVDVFIPKP 46 (89)
T ss_dssp --CCEEEEESCCTTCCH---HHHHHHHTTT--SCEEEEECCSS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHhcc--CCEEEEEEeeC
Confidence 35678999999998654 3577788765 67888888764
No 94
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=81.82 E-value=2 Score=33.55 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=30.4
Q ss_pred cccceEEEEecCCC--CCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 237 EYTTREVLVRNVPP--DPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 237 ~is~rTVlV~~IP~--~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...+++|.|.|+.. +.++.+.+.|++.|.+. |.|.++.++++
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~--G~V~~v~i~~~ 48 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKY--GKVGKCVIFEI 48 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGG--SCEEEEEEEEC
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc--CCEEEEEEecC
Confidence 34679999999964 33334567788888876 78999988875
No 95
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=81.80 E-value=1.8 Score=35.77 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=28.2
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.++||.|.|||...++ +.|+++|... |.|.++.+..+
T Consensus 38 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 74 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTE---EQIYELFSKS--GDIKKIIMGLD 74 (156)
T ss_dssp TCCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEec
Confidence 4689999999998654 3567778765 56888888765
No 96
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=81.36 E-value=1.5 Score=35.17 Aligned_cols=38 Identities=16% Similarity=0.219 Sum_probs=28.2
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...++|.|.|||.+.++ +.|+++|... |.|.++.+.+|
T Consensus 61 ~~~~~l~v~nlp~~~~~---~~l~~~f~~~--G~i~~v~i~~~ 98 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDD---KVLHAAFIPF--GDITDIQIPLD 98 (140)
T ss_dssp SSCCEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEECCCC
T ss_pred CCCcEEEEEeCCCCCCH---HHHHHHHHhc--CCEEEEEEeec
Confidence 35789999999998654 3567777765 66888877655
No 97
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=81.30 E-value=1.9 Score=33.25 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=28.5
Q ss_pred cceEEEEecCCCCCChh---HHHHHHhhhcccCCCceeEEEEE
Q 018945 239 TTREVLVRNVPPDPDES---VTQLVEHFFLVNHPDHYLTHQVV 278 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~---l~~~l~~~f~~~~p~~v~~v~v~ 278 (348)
.+++|.|.|||...++. ..+.|+++|... |.|.++.+.
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~--G~v~~v~i~ 54 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF--GKITNDFYP 54 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG--SCEEEEECC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC--CCEEEEEee
Confidence 36889999999975432 356788888876 668888775
No 98
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.03 E-value=1.6 Score=33.64 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=27.5
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...+||.|.|||.+.++ +.|+++|... |.|.++.+..+
T Consensus 23 ~~~~~l~V~nl~~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 60 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTD---QLMRQTFSPF--GQIMEIRVFPE 60 (109)
T ss_dssp SSCCEEEEECCSSCCCH---HHHHHHHHHH--SCEEEEEEETT
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEeCC
Confidence 45789999999998553 3456666654 56888888765
No 99
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=80.95 E-value=0.64 Score=35.73 Aligned_cols=40 Identities=10% Similarity=0.211 Sum_probs=28.4
Q ss_pred ceEEEEecCCCCCC---hhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 240 TREVLVRNVPPDPD---ESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 240 ~rTVlV~~IP~~~~---~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
++||.|.|+|.-.+ +...+.|+++|... |.|.++.+++|-
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~--G~i~~v~i~~d~ 48 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKA--GKVVNMEFPIDE 48 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTT--SCEEEEECCEET
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhc--CCEeEEEEEEcC
Confidence 68899999998211 22345678888865 678888887654
No 100
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=80.13 E-value=1.4 Score=34.65 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=25.5
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
+.++|.|.|||.+.++ +.|+++|... |.|.++.+..|
T Consensus 15 ~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~v~~~~i~~~ 51 (115)
T 3beg_B 15 SENRVVVSGLPPSGSW---QDLKDHMREA--GDVCYADVYRD 51 (115)
T ss_dssp --CCEEEEECCSSCCT---THHHHHHGGG--SCEEEEEECTT
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEecC
Confidence 3577999999998543 2456677765 66888888664
No 101
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=80.01 E-value=1.5 Score=35.35 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=26.8
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...++|.|.|||.+.++ +.|+++|... |.|.++.+.+|
T Consensus 40 ~~~~~l~V~nLp~~~~~---~~l~~~F~~~--G~i~~v~i~~~ 77 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDE---VQLRQLFERY--GPIESVKIVCD 77 (139)
T ss_dssp TTTSEEEEESCSTTCCH---HHHHHHHHHH--SCEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEc
Confidence 34689999999998553 3455666654 56788877655
No 102
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.84 E-value=1.3 Score=34.64 Aligned_cols=39 Identities=13% Similarity=-0.016 Sum_probs=28.5
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCce-eEEEEEcCh
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHY-LTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v-~~v~v~~d~ 281 (348)
...+||.|.|||.+.++ +.|+++|... |.| .++.+++|-
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--g~v~~~v~i~~d~ 52 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITK---MDVLQFLEGI--PVDENAVHVLVDN 52 (114)
T ss_dssp SCCCEEEEESCCTTSCH---HHHHHHTTTS--CCCSTTEEECCCT
T ss_pred CCccEEEEeCcCCcCCH---HHHHHHHHhC--CCcCCeEEEEECC
Confidence 34688999999998654 4578888775 566 667776553
No 103
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=79.82 E-value=1.1 Score=34.18 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=27.0
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
...+||.|.|||.+.++ +.|+++|... | |.++.+.++-
T Consensus 17 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G-i~~v~i~~~~ 54 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTE---ESIKEFFRGL--N-ISAVRLPREP 54 (100)
T ss_dssp ---CEEEESCCSSCCSS---SHHHHHSCSS--C-EEEEECSCCT
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhc--C-CeEEEEEecC
Confidence 45799999999998543 2567788875 6 8888887653
No 104
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.76 E-value=2.2 Score=31.57 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=27.1
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...++|.|.|+|.+.++ +.|+++|... .|.++.+.++
T Consensus 8 ~~~~~l~v~nLp~~~t~---~~l~~~F~~~---~i~~v~i~~~ 44 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTE---KNVMEFLAPL---KPVAIRIVRN 44 (91)
T ss_dssp CCCCEEEEECCCSSCCH---HHHHHHHTTS---CCSEEEEEEC
T ss_pred CCccEEEEECCCCCCCH---HHHHHHHhhC---CceEEEEEEC
Confidence 35688999999998654 3567788764 3677877766
No 105
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=79.59 E-value=1.7 Score=37.76 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=30.5
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
..+|||.|.|+|.+..+ +.|+++|... |.|.++.++++.
T Consensus 107 ~~~~~l~V~nLp~~~t~---~~L~~~F~~~--G~v~~v~i~~~~ 145 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATL---DDIKEWLEDK--GQVLNIQMRRTL 145 (193)
T ss_dssp HHHTEEEEECCCTTCCH---HHHHHHHTTS--CCEEEEEEEECT
T ss_pred cccCEEEecCCCCcCCH---HHHHHHHhcC--CCEEEEEEEECC
Confidence 45799999999998654 4678888875 678888888754
No 106
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=79.33 E-value=1.5 Score=35.63 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=30.0
Q ss_pred cceEEEEecCCCCC-ChhHHHHHHhhhcccCCCceeEEEEEc
Q 018945 239 TTREVLVRNVPPDP-DESVTQLVEHFFLVNHPDHYLTHQVVN 279 (348)
Q Consensus 239 s~rTVlV~~IP~~~-~~~l~~~l~~~f~~~~p~~v~~v~v~~ 279 (348)
.++||.|.|+|... ++.|++.|.++|... |.|.++.+.+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~--G~I~~v~i~~ 67 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQ--GDILDIVVDL 67 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHH--SCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccC--CCeEEEEecc
Confidence 46899999999974 456777788888876 6788876643
No 107
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=79.27 E-value=2.1 Score=31.25 Aligned_cols=42 Identities=19% Similarity=0.345 Sum_probs=26.4
Q ss_pred cceEEEEecCCCCC-ChhHHHHHHhhhcccC----CC-ceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDP-DESVTQLVEHFFLVNH----PD-HYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~-~~~l~~~l~~~f~~~~----p~-~v~~v~v~~d 280 (348)
.++||.|.|+|.+. ++.+++.++++..... |+ .|.++.+.++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~ 52 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD 52 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC
Confidence 46899999999984 4556666665531111 21 5777777644
No 108
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=79.25 E-value=1.4 Score=35.59 Aligned_cols=38 Identities=11% Similarity=-0.032 Sum_probs=28.9
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
-.+++|.|.|||.+.++ +.|+++|... |.|.++.+.+|
T Consensus 44 ~~~~~l~V~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d 81 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTE---RDLREVFSKY--GPIADVSIVYD 81 (129)
T ss_dssp CCSSCBCEETCTTSCCH---HHHHHHHTTT--SCEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEec
Confidence 35688999999998654 3577788765 67888888765
No 109
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=79.18 E-value=2.1 Score=34.26 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=28.2
Q ss_pred cceEEEEecCCCC-CChhHHHHHHhhhcccCCCceeEEEEEc
Q 018945 239 TTREVLVRNVPPD-PDESVTQLVEHFFLVNHPDHYLTHQVVN 279 (348)
Q Consensus 239 s~rTVlV~~IP~~-~~~~l~~~l~~~f~~~~p~~v~~v~v~~ 279 (348)
.+++|.|.|+|.+ .++ +.|+++|... |.|.++.+.+
T Consensus 24 p~~~l~V~NLp~~~~te---~~L~~lF~~f--G~V~~v~i~~ 60 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSD---SAVLKLAEPY--GKIKNYILMR 60 (112)
T ss_dssp CCCEEEEESCCCSSCCS---HHHHTTTTTT--SCCSEEEEET
T ss_pred CCCEEEEeCCCCccCCH---HHHHHHHHhc--CCEEEEEEec
Confidence 5789999999997 654 3577888765 7788888864
No 110
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.11 E-value=2.2 Score=32.94 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=27.8
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...++|.|.|+|.+.++ +.|+++|... + +.++.+++|
T Consensus 13 ~~~~~l~V~nLp~~~te---~~l~~~F~~~--G-~~~v~i~~d 49 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATE---NDIYNFFSPL--N-PMRVHIEIG 49 (102)
T ss_dssp SSSCEEEEESCCTTCCH---HHHHHSSCSC--C-CSEEEEEES
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHc--C-ceEEEEEEC
Confidence 35688999999998654 4678899875 3 347777765
No 111
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=79.07 E-value=1.9 Score=36.86 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=27.7
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.++||+|.|||.+.++ +.|+++|... |.|.++.+.++
T Consensus 27 ~~~~l~V~nLp~~~t~---~~l~~~f~~~--G~i~~v~i~~~ 63 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGE---DTIRQAFAPF--GPIKSIDMSWD 63 (216)
T ss_dssp HHTEEEEECCCTTCCH---HHHHHHHGGG--SCEEEEEECCC
T ss_pred cCCEEEEECCCCCCCH---HHHHHHHHhC--CCEEEEEEeec
Confidence 3689999999998654 3567777765 66888877654
No 112
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.41 E-value=2 Score=33.41 Aligned_cols=39 Identities=13% Similarity=0.065 Sum_probs=29.3
Q ss_pred ccceEEEEecCCCCCChhHHHHHH---hhhcccCCCceeEEEEEcCh
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVE---HFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~---~~f~~~~p~~v~~v~v~~d~ 281 (348)
+..++|.|.|||.+.++ +.|. ++|... |.|.++.+..+.
T Consensus 13 ~~~~~l~V~nLp~~~~~---~~l~~~~~~F~~~--G~i~~v~i~~~~ 54 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLAD---PEVLKRPEYFGKF--GKIHKVVINNST 54 (111)
T ss_dssp CCSSCEEEEEECTTTCC---HHHHHSTTTTTTT--SCEEEEEEECCS
T ss_pred cCCCEEEEECCCCCCCH---HHHHHHHHHhhcc--CCEEEEEEecCC
Confidence 56788999999998544 2455 888775 678888887664
No 113
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.38 E-value=2.1 Score=33.47 Aligned_cols=36 Identities=11% Similarity=0.109 Sum_probs=25.5
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEc
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVN 279 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~ 279 (348)
++++|.|.|||.+..+ +.|+++|... |.|.++.+..
T Consensus 9 ~~~~l~V~nLp~~~te---~~L~~~F~~~--G~i~~v~i~~ 44 (111)
T 1whx_A 9 SKTVILAKNLPAGTLA---AEIQETFSRF--GSLGRVLLPE 44 (111)
T ss_dssp EEEEEEEESCCTTCCH---HHHHHHHHTT--SCEEEEECCS
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEeC
Confidence 4689999999998543 3466677654 5677776643
No 114
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=78.22 E-value=2.8 Score=35.02 Aligned_cols=38 Identities=8% Similarity=0.068 Sum_probs=28.2
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...+||+|.|||....+ +.|+++|... |.|.++.+..+
T Consensus 70 ~~~~~l~V~nLp~~~t~---~~L~~~F~~~--G~i~~v~i~~~ 107 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQE---DEIQEKFCDY--GEIKNIHLNLD 107 (165)
T ss_dssp C-CEEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHhhcC--CCEEEEEEEec
Confidence 45789999999998654 3567777765 67888888765
No 115
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=78.21 E-value=1.9 Score=32.64 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=24.2
Q ss_pred EEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 242 EVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 242 TVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
||.|.|+|.+.++ +.|+++|... |.|.++.+..+
T Consensus 2 ~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 35 (101)
T 2hvz_A 2 KVYVGNLGTGAGK---GELERAFSYY--GPLRTVWIARN 35 (101)
T ss_dssp EEEEECCCSSCSH---HHHHHHHHHH--CCCSEEEEESS
T ss_pred EEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEeeC
Confidence 6999999998553 3455666654 56778888766
No 116
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=77.64 E-value=2.7 Score=31.81 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=25.4
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEE
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVV 278 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~ 278 (348)
.++||.|.|||.+.++ +.|+++|... |.|.++.+.
T Consensus 26 ~~~~l~V~nlp~~~~~---~~l~~~f~~~--G~i~~~~~~ 60 (101)
T 2la4_A 26 RVTTAYIGNIPHFATE---ADLIPLFQNF--GFILDFKHY 60 (101)
T ss_dssp SCCEEEEESCCTTCCH---HHHHHHHHTT--SCCSEEEEE
T ss_pred CCCEEEEcCCCcccCH---HHHHHHHHhC--CCEEEEEEe
Confidence 3588999999998654 3566677665 667777765
No 117
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=77.60 E-value=0.96 Score=32.23 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=21.7
Q ss_pred EEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 242 EVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 242 TVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
||.|.|+|.+.++ +.|+++|... |.|.++.+.++
T Consensus 1 ~l~v~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 34 (75)
T 1iqt_A 1 KIFVGGLSPDTPE---EKIREYFGGF--GEVESIELPMD 34 (75)
T ss_dssp CEEESCCCSSCCH---HHHHHHHHHH--SCCSEECCCCS
T ss_pred CEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEec
Confidence 4899999998543 2455566554 45666666543
No 118
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.58 E-value=1.8 Score=34.97 Aligned_cols=38 Identities=21% Similarity=0.141 Sum_probs=26.3
Q ss_pred ceEEEEecCCCCCChhHHHHHHhhhcccCC--CceeEEEEEcC
Q 018945 240 TREVLVRNVPPDPDESVTQLVEHFFLVNHP--DHYLTHQVVNN 280 (348)
Q Consensus 240 ~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p--~~v~~v~v~~d 280 (348)
.++|.|.|+|.+.++ +.|+++|....+ +.|.++.+++|
T Consensus 23 ~~~v~V~nLp~~~te---~dl~~~F~~~g~v~g~v~~v~i~~d 62 (123)
T 2dha_A 23 QVIVRMRGLPFTATA---EEVVAFFGQHCPITGGKEGILFVTY 62 (123)
T ss_dssp CCEEEECSCCTTCCH---HHHHHHHHTTSCCTTGGGGEEEEEC
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHhhCCccCCcceEEEEEC
Confidence 467999999998654 356667765533 34567888765
No 119
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=77.51 E-value=2.1 Score=33.80 Aligned_cols=40 Identities=15% Similarity=0.061 Sum_probs=28.0
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCC-CceeEEEEEcCh
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHP-DHYLTHQVVNNA 281 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p-~~v~~v~v~~d~ 281 (348)
..+||+|.|+|.+..+ +.|+++|....+ +.|.++.+++|-
T Consensus 16 ~~~~l~V~nLp~~~te---~~l~~~F~~~G~~~~v~~v~i~~~~ 56 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSI---EDVQNFLSDCTIHDGVAGVHFIYTR 56 (118)
T ss_dssp CCCEEEEESCCTTCCH---HHHHHHTTTSCBTTGGGGEEEEECS
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHHcCCccCceeEEEEECC
Confidence 4688999999998654 457778876522 126777777653
No 120
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=76.83 E-value=1.4 Score=32.85 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=22.3
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEE
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQV 277 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v 277 (348)
..++|.|.|||.+.++ +.|+++|... |.|.++.+
T Consensus 14 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~~ 47 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSI---DEILDFFYGY--QVIPGSVC 47 (95)
T ss_dssp -CEEEEEECCCTTCCH---HHHHHHTTTS--CBCTTCCE
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCccceEE
Confidence 4588999999998654 3567777764 34444433
No 121
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.47 E-value=2.7 Score=32.28 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=27.1
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeE-EEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLT-HQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~-v~v~~d 280 (348)
..++|.|.|+|.+..+ +.|+++|... |.|.+ +.+++|
T Consensus 14 ~~~~l~V~nLp~~~te---~~l~~~F~~~--G~v~~~v~i~~~ 51 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSK---EEIVQFFSGL--EIVPNGMTLPVD 51 (104)
T ss_dssp CCCEEEEESCCTTCCH---HHHHHHTTTC--CEEEEEEECCBC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCcceeEEEEEC
Confidence 4688999999998654 4578888765 55665 666655
No 122
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=76.33 E-value=3.3 Score=31.18 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=27.0
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeE--------EEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLT--------HQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~--------v~v~~d 280 (348)
..++|.|.|+|.+.++ +.|+++|... |.|.+ +.+..|
T Consensus 12 ~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~~~~~~~~~v~i~~~ 56 (99)
T 2la6_A 12 DNNTIFVQGLGENVTI---ESVADYFKQI--GIIKTNKKTGQPMINLYTD 56 (99)
T ss_dssp CCSEEEEECCCSSCCH---HHHHHHHTTT--SCBCEETTTTEESEEEEEC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHh--CCEeeccccccccEEEEec
Confidence 4688999999998654 3567778765 56777 777655
No 123
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=76.28 E-value=2 Score=32.02 Aligned_cols=37 Identities=8% Similarity=-0.013 Sum_probs=24.2
Q ss_pred eEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 241 REVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 241 rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.||.|.|+|.+.++ +.|+++|....+..|.++.+.+|
T Consensus 2 ~~l~V~nL~~~~t~---~~l~~~F~~~G~~~v~~v~i~~~ 38 (90)
T 3p5t_L 2 IALYIGNLTWWTTD---EDLTEAVHSLGVNDILEIKFFEN 38 (90)
T ss_dssp --CEEESCCTTCCH---HHHHHHHHTTTCCCCCCEEEEEC
T ss_pred eEEEEeCCCCCCCH---HHHHHHHHHhCCCceEEEEEEec
Confidence 36899999998554 34666776652226778877765
No 124
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=76.07 E-value=1.6 Score=30.99 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=22.9
Q ss_pred EEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 243 VLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 243 VlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
|.|.|+|.+.++ +.|+++|... |.|.++.+..+
T Consensus 2 l~v~nlp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 34 (75)
T 2mss_A 2 IFVGGLSVNTTV---EDVKHYFEQF--GKVDDAMLMFD 34 (75)
T ss_dssp EEEECCCSSCCH---HHHHHHHHTT--SCCSEECCCBC
T ss_pred EEEecCCCCCCH---HHHHHHHHhc--CCEEEEEEEec
Confidence 789999998654 3466677664 55777766554
No 125
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=75.94 E-value=2.3 Score=34.80 Aligned_cols=38 Identities=18% Similarity=0.087 Sum_probs=27.0
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...++|.|.|+|.+.++ +.|+++|... |.|.++.+.+|
T Consensus 71 ~~~~~l~V~nl~~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 108 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNK---TELERAFGYY--GPLRSVWVARN 108 (150)
T ss_dssp TTSCEEEEESCCSCCSC---HHHHHHHHHH--SCEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhh--CCEEEEEEeeC
Confidence 35689999999998543 2355566554 56888888766
No 126
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=75.91 E-value=3 Score=32.40 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=28.7
Q ss_pred cccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 237 EYTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 237 ~is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...+++|.|.|||.+.++ +.|+++|... |.|.++.+.+.
T Consensus 28 ~~~~~~l~V~nLp~~~t~---~~L~~~F~~~--G~i~~v~i~kg 66 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQE---SELNEIFGPF--GPMKEVKILNG 66 (108)
T ss_dssp CCSCSEEEECSSCTTCCH---HHHHHHHTTT--SCCCEEEEETT
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhc--CCEEEEEEECC
Confidence 356789999999998654 3567788765 66888877643
No 127
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.47 E-value=1.9 Score=32.20 Aligned_cols=37 Identities=19% Similarity=0.376 Sum_probs=24.8
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEE-EEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTH-QVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v-~v~~d 280 (348)
..++|.|.|+|.+.++ +.|+++|... |.|.++ .+..+
T Consensus 14 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~v~~~~~i~~~ 51 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQW---EVLDSLLVQY--GVVESCEQVNTD 51 (96)
T ss_dssp SCCCEEEEEECSSSCH---HHHHHHHHHH--SCEEEEEEECCS
T ss_pred CCCEEEEEcCCCCCCH---HHHHHHHHhc--CCeEEEEEeecC
Confidence 4688999999998543 2455566554 557777 45544
No 128
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=75.20 E-value=2.9 Score=33.57 Aligned_cols=41 Identities=12% Similarity=0.036 Sum_probs=32.1
Q ss_pred cceEEEEecCCC--CCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 239 TTREVLVRNVPP--DPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 239 s~rTVlV~~IP~--~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
.+|+|.+.|+-. +.++.+.+.|++.|.+. |.|.++.|+++.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~--G~V~~v~I~~~~ 61 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF--GAVNRVIIYQEK 61 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT--SCEEEEEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCEeEEEEeecC
Confidence 478899999944 44556788899999875 789999888764
No 129
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=74.95 E-value=2 Score=34.47 Aligned_cols=39 Identities=10% Similarity=0.186 Sum_probs=26.0
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeE--EEEEcCh
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLT--HQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~--v~v~~d~ 281 (348)
...++|+|.|||.+.++ +.|+++|... |.|.. +.+++|-
T Consensus 21 ~~~~~lfV~nL~~~~te---~~L~~~F~~~--G~v~~~~v~i~~d~ 61 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTM---DSILGALAPY--AVLSSSNVRVIKDK 61 (131)
T ss_dssp CCCCEEEECSCCTTCCS---HHHHHHHGGG--CCCCTTTEECCBCS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHh--CCcceeeEEEEEcC
Confidence 45789999999998543 2456666654 45544 6666554
No 130
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=74.46 E-value=2.2 Score=36.17 Aligned_cols=38 Identities=21% Similarity=0.188 Sum_probs=27.2
Q ss_pred cceEEEEecCCC-CCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 239 TTREVLVRNVPP-DPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 239 s~rTVlV~~IP~-~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
+++||.|.|+|. +.++ +.|+++|... |.|.++.+.++-
T Consensus 2 ~~~~l~v~nlp~~~~~~---~~l~~~F~~~--G~i~~v~i~~~~ 40 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTP---QSLFILFGVY--GDVQRVKILFNK 40 (198)
T ss_dssp CCCEEEEECCCSSSCCH---HHHHHHHHTT--CCCSEEECSTTC
T ss_pred CCcEEEEeCCCcccCCH---HHHHHHHHhc--CCEEEEEEEeCC
Confidence 468899999999 7554 3566777665 557788776553
No 131
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=74.39 E-value=4 Score=30.60 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=26.8
Q ss_pred cceEEEEecCCC-CCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPP-DPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~-~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.+++|.|.|||. ..++ +.|+++|... |.|.++.+.+.
T Consensus 9 ~~~~l~V~nlp~~~~t~---~~l~~~F~~~--G~v~~v~i~~g 46 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSK---EDLFRIFSPY--GHIMQINIKNA 46 (96)
T ss_dssp CCEEEEEESSTTSCCCH---HHHHHHHTTT--CCCCEEEEETT
T ss_pred CCCEEEEeCCCcccCCH---HHHHHHHHhc--CCEEEEEEeCC
Confidence 468899999997 7554 3567788765 66778777543
No 132
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=74.39 E-value=3.3 Score=34.67 Aligned_cols=38 Identities=11% Similarity=-0.041 Sum_probs=26.8
Q ss_pred ceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 240 TREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 240 ~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.++|.|.|||.+.++ +.|+++|....+..|.++.++.|
T Consensus 55 ~~~lfVgnLp~~~te---~~L~~~F~~~G~i~v~~v~i~~d 92 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTD---QQLIQVIRSIGVYDVVELKFAEN 92 (156)
T ss_dssp -CEEEEECCCTTCCH---HHHHHHHHHTTCCCEEEEEEEEC
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHHHCCccEEEEEEEec
Confidence 578999999998654 34666776653226888888766
No 133
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.28 E-value=2.7 Score=32.48 Aligned_cols=38 Identities=8% Similarity=0.047 Sum_probs=26.3
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCcee--------EEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYL--------THQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~--------~v~v~~d 280 (348)
...+||.|.|||.+.++ +.|+++|... |.|. .+.+..|
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~~~~~~~~~v~i~~~ 58 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTL---DDLADFFKQC--GVVKMNKRTGQPMIHIYLD 58 (113)
T ss_dssp CCCCEEEEECCCTTCCH---HHHHHHHTTT--SCBCBCSSSCCBSEECCBC
T ss_pred CCCCEEEEcCCCCCCCH---HHHHHHHHhc--CCEeEccccCccCEEEEEe
Confidence 45789999999998654 3566777765 4565 4666654
No 134
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=73.50 E-value=2 Score=34.89 Aligned_cols=38 Identities=8% Similarity=-0.000 Sum_probs=27.6
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...+||.|.|||.+.++ +.|+++|... |.|.++.+..+
T Consensus 45 ~~~~~l~V~nLp~~~te---~~L~~~F~~~--G~i~~v~i~~~ 82 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSP---DTLRRVFEKY--GRVGDVYIPRD 82 (135)
T ss_dssp GGCCCEEEECCCSSCHH---HHHHHHHGGG--SCCSEEECCCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCEEEEEEEec
Confidence 34688999999998643 3567777765 56778877655
No 135
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=73.32 E-value=4.4 Score=30.65 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=26.5
Q ss_pred cceEEEEecCCC-CCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPP-DPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~-~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.+++|.|.|+|. +.++ +.|+++|... |.|.++.+.+.
T Consensus 21 ~~~~l~V~nLp~~~~t~---~~L~~~F~~~--G~v~~v~i~~g 58 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSK---EDLFRIFSPY--GHIMQINIKNA 58 (97)
T ss_dssp TTCEEEEESCCSSCCCH---HHHHHHHGGG--SCEEEEEECSS
T ss_pred CCCEEEEeCCCcccCCH---HHHHHHHHhc--CCEEEEEEeCC
Confidence 468899999997 7554 3567777765 66888776443
No 136
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.28 E-value=3 Score=32.82 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=26.5
Q ss_pred ceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 240 TREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 240 ~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.++|.|.|+|.+.++ +.|+++|... .|.++.+++|
T Consensus 16 ~~~v~V~nLp~~~te---~dl~~~F~~~---~v~~v~i~~d 50 (109)
T 2dnn_A 16 DLYVSVHGMPFSAME---NDVRDFFHGL---RVDAVHLLKD 50 (109)
T ss_dssp HHEEEEECCCSSCCH---HHHHHHTTTS---CCCEEEECCC
T ss_pred CCEEEEeCCCCCCCH---HHHHHHhccC---CeeEEEEEEC
Confidence 478999999998654 4577888765 3678888765
No 137
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=72.52 E-value=3 Score=37.52 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=29.9
Q ss_pred cceEEEEecCCCCC-ChhHHHHHHhhhcccCCCceeEEEEEc
Q 018945 239 TTREVLVRNVPPDP-DESVTQLVEHFFLVNHPDHYLTHQVVN 279 (348)
Q Consensus 239 s~rTVlV~~IP~~~-~~~l~~~l~~~f~~~~p~~v~~v~v~~ 279 (348)
.++||.|.|||.+. ++.|++.|.++|... |.|.++.+.+
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~--G~i~~v~~~~ 47 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQF--GQILDILVSR 47 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhcc--CCeEEEEEcC
Confidence 46889999999984 456666677888765 6788887765
No 138
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=72.17 E-value=5.3 Score=32.55 Aligned_cols=38 Identities=8% Similarity=0.146 Sum_probs=28.3
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...++|.|.|+|.+.++ +.|+++|... |.|.++.+.++
T Consensus 93 ~~~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~v~~~~~ 130 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTE---NDIRVMFSSF--GQIEECRILRG 130 (175)
T ss_dssp GGGSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCeEEEcCCCCcCCH---HHHHHHHHhC--CCEEEEEEEEC
Confidence 35789999999998553 3567777765 56888888766
No 139
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.01 E-value=5.1 Score=29.85 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=23.9
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEE
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTH 275 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v 275 (348)
..++|.|.|||.+.++ +.|+++|... |.|.++
T Consensus 7 ~~~~l~V~nl~~~~t~---~~l~~~F~~~--G~v~~v 38 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDS---AQLSEYFLAF--GPVASV 38 (94)
T ss_dssp TCCEEEEECCCTTCCH---HHHHHHGGGT--SCEEEE
T ss_pred CCCEEEEECCCCCCCH---HHHHHHHHhc--CCeEEE
Confidence 3578999999998654 4577788765 567766
No 140
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=71.99 E-value=3.2 Score=34.09 Aligned_cols=38 Identities=13% Similarity=0.026 Sum_probs=27.8
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCc---eeEEEEEcCh
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDH---YLTHQVVNNA 281 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~---v~~v~v~~d~ 281 (348)
..++|.|.|+|.+.++ +.|+++|... |. |.++.+++|-
T Consensus 43 ~~~~lfVgnLp~~~te---~dL~~~F~~~--G~v~~v~~v~i~~d~ 83 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSV---EDVQNFLSDC--TIHDGAAGVHFIYTR 83 (136)
T ss_dssp TTCEEEEESCCTTCCH---HHHHHHTTTC--CCSSSSTTEEEEECS
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHh--CCcCceeEEEEEECC
Confidence 3578999999998654 4577888775 44 6677777653
No 141
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=71.84 E-value=3.7 Score=37.13 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=28.0
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
-.++||+|.|||.+.++ +.|.++|... |.|.++.+.++.
T Consensus 39 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~~ 77 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQ---NKVYKYFKHC--GPIIHVDVADSL 77 (292)
T ss_dssp ---CEEEEEEECTTCCH---HHHHHHHGGG--SCEEEEEEEECT
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEECC
Confidence 45799999999998654 3567788765 668888887753
No 142
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.61 E-value=3.3 Score=31.64 Aligned_cols=36 Identities=8% Similarity=0.027 Sum_probs=23.3
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCc-eeEEEEE
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDH-YLTHQVV 278 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~-v~~v~v~ 278 (348)
...+||.|.|||.+.++ +.|+++|... |. |.++.+.
T Consensus 6 ~~~~~l~V~nLp~~~t~---~~l~~~f~~~--G~~v~~v~i~ 42 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKR---EEILEEIAKV--TEGVLDVIVY 42 (109)
T ss_dssp CCSEEEEEECCCTTSCH---HHHHHHHHHH--STTEEEEECC
T ss_pred cCCCEEEEeCCCCcCCH---HHHHHHHHHh--cCCceEEEEE
Confidence 34688999999998543 2345555544 33 6677665
No 143
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=71.46 E-value=4.8 Score=33.65 Aligned_cols=37 Identities=14% Similarity=0.360 Sum_probs=28.0
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++|.|.|+|.+.++ +.|.++|... |.|.++.+.+|
T Consensus 103 ~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 139 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEE---HHLRDYFEQY--GKIEVIEIMTD 139 (196)
T ss_dssp CCSEEEEECCTTTCCH---HHHHHHHTTT--SCEEEEEEEEC
T ss_pred CcceEEEeCCCCCCCH---HHHHHHHhcC--CCeEEEEEeec
Confidence 4578999999998654 4567778765 67888888765
No 144
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=71.43 E-value=2.5 Score=32.59 Aligned_cols=40 Identities=13% Similarity=-0.027 Sum_probs=27.2
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCC-CceeEEEEEcCh
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHP-DHYLTHQVVNNA 281 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p-~~v~~v~v~~d~ 281 (348)
..++|.|.|+|.+..+ +.|+++|....+ +.|.++.+++|-
T Consensus 10 ~~~~l~V~nLp~~~te---~~l~~~F~~~g~~~~v~~v~i~~~~ 50 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTM---EDVLNFFSDCRIRNGENGIHFLLNR 50 (107)
T ss_dssp SCCEEEEECCCSSCCS---HHHHHHTTTSCBTTTTTTEECCCCT
T ss_pred CccEEEEeCCCCCCCH---HHHHHHHHhcCCcCCcceEEEEECC
Confidence 4678999999998544 356778876522 236777776653
No 145
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=71.41 E-value=2.3 Score=35.15 Aligned_cols=38 Identities=18% Similarity=0.181 Sum_probs=28.0
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
-..++|.|.|+|.+.++ +.|+++|... | +.++.+++|-
T Consensus 44 ~~~~~lfV~nLp~~~te---~dL~~~F~~~--G-i~~v~i~~d~ 81 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATE---NDIYNFFSPL--N-PVRVHIEIGP 81 (139)
T ss_dssp -CCCCEECCSCCTTCCH---HHHHHHHCSC--C-CSEEECCCSS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--C-CeEEEEEECC
Confidence 34688999999998654 4678888875 4 4588887663
No 146
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=71.26 E-value=2.1 Score=32.13 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=20.1
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhccc
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVN 267 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~ 267 (348)
...++|.|.|||.+.++ +.|+++|...
T Consensus 13 ~~~~~l~v~nLp~~~t~---~~l~~~F~~~ 39 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSI---DEILDFFYGY 39 (98)
T ss_dssp CSSEEEEEESCCTTCCH---HHHHHHTTTS
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHc
Confidence 34688999999998654 3567777765
No 147
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=71.13 E-value=3.5 Score=35.23 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=26.5
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.++||.|.|||.+..+ +.|+++|... |.|.++.+.+|
T Consensus 87 ~~~~l~V~nLp~~~te---~~L~~~F~~~--G~I~~v~i~~d 123 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSD---ADIQELFAEF--GTLKKAAVDYD 123 (177)
T ss_dssp TCEEEEEECCCSCCCH---HHHHHHHHHT--SCCSEEEECCC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEEEC
Confidence 4689999999998553 3456666654 56778877665
No 148
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=70.73 E-value=3.2 Score=34.04 Aligned_cols=38 Identities=8% Similarity=-0.000 Sum_probs=26.7
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...++|.|.|||.+.++ +.|+++|... |.|.++.+..|
T Consensus 68 ~~~~~l~v~nl~~~~~~---~~l~~~F~~~--G~v~~~~i~~~ 105 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSP---DTLRRVFEKY--GRVGDVYIPRD 105 (158)
T ss_dssp CBCCEEEEESCCTTCCH---HHHHHHHHHH--SCEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhc--CCeEEEEEeec
Confidence 34689999999998543 3455666554 56778877765
No 149
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=70.21 E-value=5.9 Score=31.87 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=27.5
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++|.|.|+|.+.++ +.|.++|... |.|.++.+.++
T Consensus 86 ~~~~l~v~nl~~~~t~---~~l~~~f~~~--G~i~~~~i~~~ 122 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDD---ETLRNAFKDF--PSYLSGHVMWD 122 (166)
T ss_dssp TCEEEEEESCCTTCCH---HHHHHHHTTS--TTEEEEEEEEC
T ss_pred CCceEEECCCCCCCCH---HHHHHHHhcc--CCeeEEEEEec
Confidence 4688999999998654 3567777664 66788877655
No 150
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=69.80 E-value=6.1 Score=31.99 Aligned_cols=39 Identities=10% Similarity=0.265 Sum_probs=28.6
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
..+++|.|.|+|.+.++ +.|+++|... |.|.++.+.++-
T Consensus 87 ~~~~~l~v~nl~~~~t~---~~l~~~f~~~--G~i~~~~i~~~~ 125 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITD---DQLDTIFGKY--GSIVQKNILRDK 125 (168)
T ss_dssp TTTCEEEEESCCTTCCH---HHHHHHHTSS--SCEEEEEEEECT
T ss_pred CCCCCEEEeCCCCCCCH---HHHHHhhhcC--CcEEEEEEEEcC
Confidence 35688999999998654 4577788765 668888776653
No 151
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=69.46 E-value=4.5 Score=31.13 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=26.0
Q ss_pred cceEEEEecCCCC-CChhHHHHHHhhhcccCCCceeEEEEEc
Q 018945 239 TTREVLVRNVPPD-PDESVTQLVEHFFLVNHPDHYLTHQVVN 279 (348)
Q Consensus 239 s~rTVlV~~IP~~-~~~~l~~~l~~~f~~~~p~~v~~v~v~~ 279 (348)
.+++|.|.|+|.+ .++ +.|+++|... |.|.++.+.+
T Consensus 26 ~~~~l~V~nl~~~~~t~---~~l~~~F~~~--G~v~~v~i~~ 62 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKK---SDVETIFSKY--GRVAGCSVHK 62 (110)
T ss_dssp CSSEEEECSCCCSSCCH---HHHHHHHGGG--SCCSEEEEET
T ss_pred CCcEEEEeCCCcccCCH---HHHHHHHHhC--CCeEEEEEeC
Confidence 3589999999998 664 4567777765 5677776643
No 152
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=69.01 E-value=5.8 Score=33.66 Aligned_cols=37 Identities=11% Similarity=0.172 Sum_probs=28.0
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++|.|.|+|.+.++ +.|.++|... |.|.++.+.++
T Consensus 124 ~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~ 160 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSD---DDIKSVFEAF--GKIKSATLARD 160 (216)
T ss_dssp TSCEEEEECCCTTCCH---HHHHHHHTTS--SCEEEEEEEEC
T ss_pred CCcEEEEeCCCCcCCH---HHHHHHHhcc--CCeeEEEEEec
Confidence 3578999999998654 4567788765 67888888766
No 153
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=68.71 E-value=3.8 Score=35.93 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=28.1
Q ss_pred ccceEEEEecCCC-CCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 238 YTTREVLVRNVPP-DPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP~-~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
-.++||+|.|||. +.++ +.|+++|... |.|.++.+.++-
T Consensus 32 ~~~~~l~V~nLp~~~~te---~~L~~~F~~~--G~i~~v~i~~~~ 71 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTP---QSLFILFGVY--GDVQRVKILFNK 71 (229)
T ss_dssp CCCSEEEEESCCTTTCCH---HHHHHHHHHH--TCEEEEEECCTT
T ss_pred CCCCEEEEeCCCcccCCH---HHHHHHHHhC--CCeEEEEEEECC
Confidence 4578999999999 7553 3456666654 568888887654
No 154
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=67.95 E-value=4.4 Score=29.85 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=24.1
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEE
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQV 277 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v 277 (348)
..++|.|.|+|.+.++ +.|+++|... .|.++.+
T Consensus 4 ~~~~l~V~nLp~~~t~---~~l~~~F~~~---~v~~~~i 36 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNC---QEVHDLLKDY---DLKYCYV 36 (88)
T ss_dssp CCCCEEEESCCSSCCH---HHHHHHTCSS---CCCCEEE
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHhhC---CeEEEEE
Confidence 3578999999998654 4577788765 3666665
No 155
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=67.91 E-value=5.6 Score=35.41 Aligned_cols=39 Identities=8% Similarity=-0.013 Sum_probs=26.6
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++|+|.|||.+.++ +.|+++|....+..|.++.|++|
T Consensus 67 ~~~~lfVgnL~~~~te---~~L~~~F~~~G~~~v~~v~i~~d 105 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTD---EDLTEAVHSLGVNDILEIKFFEN 105 (229)
T ss_dssp --CEEEEESCCTTCCH---HHHHHHHHTTTCCCEEEEEEEEC
T ss_pred CccEEEEeCCCCCCCH---HHHHHHHHHHCCcceEEEEEEec
Confidence 4578999999998654 35667776652116888888766
No 156
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=67.25 E-value=5.5 Score=32.47 Aligned_cols=36 Identities=8% Similarity=0.244 Sum_probs=26.6
Q ss_pred ceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 240 TREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 240 ~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.++|.|.|+|.+.++ +.|+++|... |.|.++.+.++
T Consensus 94 ~~~l~v~nlp~~~t~---~~l~~~f~~~--G~v~~v~i~~~ 129 (172)
T 2g4b_A 94 AHKLFIGGLPNYLND---DQVKELLTSF--GPLKAFNLVKD 129 (172)
T ss_dssp TTCEEEECCCTTCCH---HHHHHHHHTT--SCEEEEEEEEC
T ss_pred CCEEEEEcCCCcCCH---HHHHHHHHhc--CCceEEEEEec
Confidence 577999999998553 3566677654 66888887765
No 157
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.41 E-value=3.9 Score=31.84 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=24.0
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEc
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVN 279 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~ 279 (348)
.+++|.|.|||.+.++ +.|+++|... |.|. +.++.
T Consensus 7 ~~~~lfVgnLp~~~te---~~L~~~F~~~--G~i~-~~~~~ 41 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDE---DEITASFRRF--GPLV-VDWPH 41 (114)
T ss_dssp CCCCEEEECCCTTCCH---HHHHHHTTTT--CCCC-EECTT
T ss_pred CCCEEEEcCCCCCCCH---HHHHHHHHhc--CCEE-EEEee
Confidence 3688999999998654 3567788765 4455 44443
No 158
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=66.25 E-value=8.4 Score=30.96 Aligned_cols=38 Identities=13% Similarity=0.297 Sum_probs=27.6
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...++|.|.|+|.+.++ +.|+++|... |.|.++.+..+
T Consensus 86 ~~~~~l~v~nl~~~~t~---~~l~~~f~~~--G~i~~~~i~~~ 123 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQ---KELEQLFSQY--GRIITSRILVD 123 (167)
T ss_dssp GTTCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCCcEEECCCCCcCCH---HHHHHHHHhc--CCEeEEEEEec
Confidence 35688999999998553 3567777765 56778777655
No 159
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=65.27 E-value=6.2 Score=31.98 Aligned_cols=36 Identities=14% Similarity=0.140 Sum_probs=26.4
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCcee--EEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYL--THQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~--~v~v~~d 280 (348)
..++|.|.|+|.+.++ +.|+++|... + |. ++.+++|
T Consensus 41 ~~~~lfVgnLp~~~te---~dL~~~F~~~--~-i~~~~v~i~~d 78 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTK---EEIVQFFSGL--E-IVPNGITLPVD 78 (126)
T ss_dssp SCCEEEEECCCTTCCH---HHHHHHTTTS--C-EEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHhcC--C-ceeeEEEEEEC
Confidence 4678999999998654 4678888765 3 45 7777655
No 160
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=64.61 E-value=8.7 Score=31.24 Aligned_cols=41 Identities=20% Similarity=0.346 Sum_probs=25.6
Q ss_pred ceEEEEecCCCCC-ChhHHHHHHhhhccc----CCC-ceeEEEEEcC
Q 018945 240 TREVLVRNVPPDP-DESVTQLVEHFFLVN----HPD-HYLTHQVVNN 280 (348)
Q Consensus 240 ~rTVlV~~IP~~~-~~~l~~~l~~~f~~~----~p~-~v~~v~v~~d 280 (348)
+|+|.|.|+|.+. ++.|++.++++.... .|+ .|.++.+.++
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~ 50 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD 50 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC
Confidence 5889999999984 456666666653211 122 5666666543
No 161
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.10 E-value=5.2 Score=31.30 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=26.0
Q ss_pred ceE-EEEecCCCCCC-hhHHHHHHhhhcccCCCceeEE
Q 018945 240 TRE-VLVRNVPPDPD-ESVTQLVEHFFLVNHPDHYLTH 275 (348)
Q Consensus 240 ~rT-VlV~~IP~~~~-~~l~~~l~~~f~~~~p~~v~~v 275 (348)
+.| |.|.|+|.+.+ +.|++.|.++|.+. -|.|.++
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~y-GG~Vl~V 44 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNC-GGKVLSI 44 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTT-TCCEEEC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHc-CCeeEEE
Confidence 455 88999999854 57788888999876 2367665
No 162
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=63.18 E-value=8.6 Score=32.08 Aligned_cols=38 Identities=8% Similarity=0.220 Sum_probs=27.6
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...++|.|.|+|...++ +.|+++|... |.|.++.+.++
T Consensus 112 ~~~~~l~v~nl~~~~~~---~~l~~~f~~~--G~v~~~~~~~~ 149 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLND---DQVKELLTSF--GPLKAFNLVKD 149 (198)
T ss_dssp CCCCEEEEECCCTTCCH---HHHHHHHHTB--SCEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHc--CCccEEEEeec
Confidence 35689999999998553 3566677665 56778877665
No 163
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=61.42 E-value=5.8 Score=32.18 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=26.0
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
..++|.|.|+|.+.++ +.|+++|... |.|.++.+..|
T Consensus 86 ~~~~l~V~nlp~~~t~---~~l~~~F~~~--G~i~~~~i~~~ 122 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRP---KEFEEFFSQW--GTIIDAQLMLD 122 (167)
T ss_dssp HCEEEEEEEECTTCCH---HHHHHHHHTT--SCCSEEECCCS
T ss_pred CCCeEEECCCCCCCCH---HHHHHHHHhC--ccEEEEEEEEc
Confidence 3578999999998553 3466677654 56777777655
No 164
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=60.97 E-value=8.7 Score=34.33 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=27.5
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.++||.|.|||.+.++ +.|.++|... |.|.++.+.++
T Consensus 21 ~~~~l~V~nLp~~~te---~~l~~~F~~~--G~i~~v~i~~~ 57 (261)
T 3sde_A 21 QRCRLFVGNLPTDITE---EDFKRLFERY--GEPSEVFINRD 57 (261)
T ss_dssp GGGEEEEESCCTTCCH---HHHHHHTGGG--CCCSEEEEETT
T ss_pred CCCEEEEECCCCCCCH---HHHHHHHHhc--CCEEEEEEeCC
Confidence 4688999999998654 3567788765 56778877643
No 165
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=60.94 E-value=15 Score=28.61 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=20.2
Q ss_pred CCCCCCCCccc------HHHHHHHHHHHHHHHhcc
Q 018945 318 GFLGLWGKTVD------AIDFYTSKIETLKKEVSG 346 (348)
Q Consensus 318 g~~~~~g~kVD------aidy~~~~l~~l~~~i~~ 346 (348)
+-|++||..++ .|+.+.++++.+..++..
T Consensus 48 ~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~ 82 (112)
T 1l8d_A 48 GKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAK 82 (112)
T ss_dssp EECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778887655 477777777777776654
No 166
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=60.36 E-value=9.3 Score=33.18 Aligned_cols=36 Identities=8% Similarity=0.094 Sum_probs=27.1
Q ss_pred ceEEEEecCC-CCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 240 TREVLVRNVP-PDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 240 ~rTVlV~~IP-~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
++||+|.|+| ...++ +.|.++|... |.|.++.+.++
T Consensus 4 ~~~l~V~nL~~~~~~~---~~L~~~F~~~--G~v~~v~i~~~ 40 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNC---DRVFNVFCLY--GNVEKVKFMKS 40 (205)
T ss_dssp CSEEEEECCCTTTCCH---HHHHHHHTTT--SCEEEEEECTT
T ss_pred CCEEEEeCCCcccCCH---HHHHHHHHhc--CCeEEEEEecC
Confidence 5789999999 56554 3567788764 78889888765
No 167
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.21 E-value=11 Score=29.98 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=24.8
Q ss_pred ceEEEEecCCCCCChhHHHHHHhhhccc---CCCceeEEEE
Q 018945 240 TREVLVRNVPPDPDESVTQLVEHFFLVN---HPDHYLTHQV 277 (348)
Q Consensus 240 ~rTVlV~~IP~~~~~~l~~~l~~~f~~~---~p~~v~~v~v 277 (348)
-++|.|+|+|++.++ +.|+-||++- .-|.|.++..
T Consensus 8 ~~~I~V~~lPp~~~~---e~L~LYFEn~rrsGGG~V~~v~~ 45 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPD---ELLTLYFENRRRSGGGPVLSWQR 45 (104)
T ss_dssp CCEEEEESCCTTSCH---HHHHHHHHCTTTTCCCCEEEEEE
T ss_pred ccEEEEECCCCCCCh---hHheEEEeCCCcCCCceeeEEEE
Confidence 478999999998654 4778888862 3346666544
No 168
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.50 E-value=6.8 Score=29.28 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=18.1
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhccc
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVN 267 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~ 267 (348)
.+++|.|.|||.+.++ +.|+++|...
T Consensus 18 ~~~~l~V~nL~~~~t~---~~l~~~F~~~ 43 (97)
T 2e5j_A 18 LAADVYVGNLPRDARV---SDLKRALREL 43 (97)
T ss_dssp CCCEEEEECCCTTCCH---HHHHHHHHHT
T ss_pred CCCEEEEeCCCCcCcH---HHHHHHHHhc
Confidence 4689999999998543 2455555554
No 169
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=59.31 E-value=9.8 Score=32.79 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=27.9
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
..++|.|.|+|.+.++ +.|.++|... |.|.++.+.+|.
T Consensus 102 ~~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~~~i~~d~ 139 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDN---KALYDTFSAF--GNILSCKVVCDE 139 (213)
T ss_dssp CTTEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEET
T ss_pred ccccceECCcccccHH---HHHHHHHhhc--CCeEEEEeeccC
Confidence 3567999999998654 3567777765 678888887653
No 170
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.44 E-value=5.1 Score=31.62 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=22.3
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeE
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLT 274 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~ 274 (348)
..++|.|.|||.+.++ +.|+++|... |.|.+
T Consensus 24 ~~~~l~V~nLp~~~te---~~l~~~F~~~--G~v~~ 54 (124)
T 1wel_A 24 AGFCVYLKGLPFEAEN---KHVIDFFKKL--DIVED 54 (124)
T ss_dssp CCCEEEEECCCTTCCH---HHHHHHSCSS--CBCTT
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhc--CCccc
Confidence 4588999999998654 4577788765 44444
No 171
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=57.31 E-value=6.3 Score=29.14 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=17.4
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhccc
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVN 267 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~ 267 (348)
..++|.|.|||.+.++ +.|+++|...
T Consensus 7 ~~~~l~V~nLp~~~t~---~~l~~~F~~~ 32 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTA---DDLRQLFGDR 32 (93)
T ss_dssp CCCCEEEECCCTTCCH---HHHHHHHHHT
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHHc
Confidence 4578999999998543 2345555543
No 172
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=56.79 E-value=9 Score=29.71 Aligned_cols=42 Identities=12% Similarity=0.033 Sum_probs=30.5
Q ss_pred ccceEEEEecC--CCCCC-----hhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 238 YTTREVLVRNV--PPDPD-----ESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~I--P~~~~-----~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
..+|.|.+.|+ |.+.. +.+.+.|++.|.+. |.|.++.|+++.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~--G~V~~v~i~~~~ 51 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY--GLVKSIEIPRPV 51 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT--SCEEEEECCCCB
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc--CCEEEEEEeccC
Confidence 35788999998 44432 24667788888765 789999988765
No 173
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=56.09 E-value=10 Score=33.81 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=28.0
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
..++||.|.|+|.+.++ +.|+++|... |.|.++.+..+-
T Consensus 205 ~~~~~l~v~nl~~~~~~---~~l~~~F~~~--G~i~~v~~~~~~ 243 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNE---LMLSMLFNQF--PGFKEVRLVPGR 243 (282)
T ss_pred CCCCEEEEeCCCCcCCH---HHHHHHHHhc--CCeEEEEEecCC
Confidence 45789999999998543 3566677654 678888776543
No 174
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=55.82 E-value=14 Score=30.63 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=18.2
Q ss_pred cceEEEEecCCCCC-ChhHHHHHHhh
Q 018945 239 TTREVLVRNVPPDP-DESVTQLVEHF 263 (348)
Q Consensus 239 s~rTVlV~~IP~~~-~~~l~~~l~~~ 263 (348)
.+|||.|.|||.+. ++.|++.++.+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~ 28 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQ 28 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHH
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHH
Confidence 46899999999985 45566666655
No 175
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=54.48 E-value=10 Score=37.22 Aligned_cols=38 Identities=18% Similarity=0.139 Sum_probs=28.2
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...+||+|.|||....+ +.|.++|..+ |.|.+|.|+.|
T Consensus 100 ~~~~~lfV~nL~~~~te---~~L~~~F~~~--G~I~~v~i~~d 137 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTE---SKLRREFEVY--GPIKRIHMVYS 137 (437)
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHc--CCeeEEEeecc
Confidence 34589999999998654 3567777765 67888888765
No 176
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.01 E-value=12 Score=28.02 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=20.0
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhcc
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLV 266 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~ 266 (348)
...+||.|.|||.+.++ +.|+++|..
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~ 38 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTE---ETLKESFDG 38 (102)
T ss_dssp CCCSSEEEECCCTTCCH---HHHHHTSTT
T ss_pred CCCCEEEEeCCCCccCH---HHHHHHhcC
Confidence 45788999999998654 457778874
No 177
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=58.78 E-value=2.8 Score=32.71 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=20.7
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeE
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLT 274 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~ 274 (348)
.+++|.|.|||.+.++ +.|+++|... |.|.+
T Consensus 6 ~~~~l~V~nLp~~~t~---~~l~~~F~~~--G~i~~ 36 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTI---ESVADYFKQI--GIIKT 36 (116)
Confidence 4678999999997443 2456666654 44555
No 178
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=51.27 E-value=17 Score=32.36 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=26.8
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.+++|.|.|+|.+.++ +.|.++|... |.|.++.+.++
T Consensus 94 ~~~~l~v~nlp~~~t~---~~l~~~f~~~--G~i~~~~i~~~ 130 (284)
T 3smz_A 94 TDALLCVANLPPSLTQ---QQFEELVRPF--GSLERCFLVYS 130 (284)
T ss_dssp CSCEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEC
T ss_pred CCCEEEEcCCCCcCCH---HHHHHHHHhc--CCeeEEEEEee
Confidence 3578999999998654 3567777765 56778777654
No 179
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.89 E-value=12 Score=27.97 Aligned_cols=27 Identities=11% Similarity=0.238 Sum_probs=20.4
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhccc
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVN 267 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~ 267 (348)
..+++|.|.|||.+.++ +.|+++|...
T Consensus 13 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~ 39 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATE---ETLQEVFEKA 39 (101)
T ss_dssp CCCSEEEEESCCTTCCH---HHHHHHCSSC
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhC
Confidence 35789999999998654 3567788764
No 180
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=50.83 E-value=11 Score=29.65 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=22.3
Q ss_pred ceEEEEecCCCCCChhHHHHHHhhhcccCCC-ceeEEEEE
Q 018945 240 TREVLVRNVPPDPDESVTQLVEHFFLVNHPD-HYLTHQVV 278 (348)
Q Consensus 240 ~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~-~v~~v~v~ 278 (348)
.++|.|.|+|.+.++ +.|+++|... | .|..+.+.
T Consensus 28 ~~~l~VgnLp~~~te---~dL~~~F~~~--G~~v~~v~i~ 62 (111)
T 2jvr_A 28 RYRITMKNLPEGCSW---QDLKDLAREN--SLETTFSSVN 62 (111)
T ss_dssp CEEEEEECSSCCCCH---HHHHHHHHHH--TCCCSEEECS
T ss_pred CCEEEEECCCCCCCH---HHHHHHHHHh--CCeeEEEEEE
Confidence 467999999998553 3455566554 4 46666553
No 181
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=50.28 E-value=11 Score=27.86 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=19.5
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhccc
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVN 267 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~ 267 (348)
-..+||.|.|||.+.++ +.|+++|...
T Consensus 14 ~~~~~l~V~nL~~~~t~---~~l~~~F~~~ 40 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITE---DELKEVFEDA 40 (96)
T ss_dssp TGGGEEEEESCCSSCCH---HHHHHHHCSE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHhhC
Confidence 35789999999998654 3466677654
No 182
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.15 E-value=21 Score=27.43 Aligned_cols=39 Identities=10% Similarity=0.019 Sum_probs=27.6
Q ss_pred ccceEEEEecCCCCC----C----hhHHHHHHhhhcccCCCceeEEEEE
Q 018945 238 YTTREVLVRNVPPDP----D----ESVTQLVEHFFLVNHPDHYLTHQVV 278 (348)
Q Consensus 238 is~rTVlV~~IP~~~----~----~~l~~~l~~~f~~~~p~~v~~v~v~ 278 (348)
..++||+|.|+.... + +.+.+.|+++|... |.|.++.+.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~--G~v~~v~i~ 59 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF--GQIRKLLLF 59 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT--SCCSEEEEE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc--CCEeEEEEe
Confidence 357999999994432 1 23567888999876 678888663
No 183
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=49.12 E-value=17 Score=32.30 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=27.5
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.+++|.|.|+|...++ +.|+++|... |.|.++.+..|
T Consensus 95 ~~~~l~v~nl~~~~t~---~~l~~~F~~~--G~i~~v~i~~~ 131 (261)
T 3sde_A 95 HGAALTVKNLSPVVSN---ELLEQAFSQF--GPVEKAVVVVD 131 (261)
T ss_dssp CSSEEEEESCCTTCCH---HHHHHHHGGG--SCEEEEEEEEE
T ss_pred cCCcccccCCCCCCCH---HHHHHHHHhc--CCeEEEEeeeC
Confidence 3578999999998654 3567777765 67888887766
No 184
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=48.01 E-value=16 Score=33.00 Aligned_cols=40 Identities=8% Similarity=0.076 Sum_probs=29.2
Q ss_pred ccceEEEEecCCCCCC------hhHHHHHHhhhcccCCCceeEEEEEc
Q 018945 238 YTTREVLVRNVPPDPD------ESVTQLVEHFFLVNHPDHYLTHQVVN 279 (348)
Q Consensus 238 is~rTVlV~~IP~~~~------~~l~~~l~~~f~~~~p~~v~~v~v~~ 279 (348)
-..+||.|.|||.+.+ +...+.|+++|... |.|+++.++.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f--G~I~~v~v~~ 177 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL--GDIDRIRYVE 177 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT--SCEEEEEEEG
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHcc--CCEEEEEEEC
Confidence 3578999999998742 11245678888776 7799988874
No 185
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=47.69 E-value=21 Score=27.34 Aligned_cols=36 Identities=8% Similarity=0.150 Sum_probs=24.5
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEc
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVN 279 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~ 279 (348)
.+-.++|.|++.+.++ +.|+++|.+. |.|.++++..
T Consensus 6 ~~~wL~VgNL~~~~te---~~L~~lF~q~--G~V~~~~l~~ 41 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDG---PTLRTLCMQH--GPLVSFHPYL 41 (89)
T ss_dssp CCCEEEEECCCTTCCC---HHHHHHHHHH--SCEEEEEEET
T ss_pred ccceEEEeCCCccCCH---HHHHHHHHhh--CCEEEEEEcC
Confidence 3556999999998654 2455566554 5578877754
No 186
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=46.08 E-value=23 Score=29.40 Aligned_cols=36 Identities=11% Similarity=0.228 Sum_probs=23.9
Q ss_pred eEEEEecC----CCCCChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 241 REVLVRNV----PPDPDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 241 rTVlV~~I----P~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
..|+|.|+ |....+ +.|++||... |.|.++.++.|-
T Consensus 3 ~kI~VgnL~~~~~~~tte---~~Lk~~Fs~f--GeV~~~~li~Dp 42 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQD---ISIKNYFKKY--GEISHFEAFNDP 42 (136)
T ss_dssp CEEEEEESSSSCCCCCCH---HHHHHHHHTT--SCCSEEEEEECT
T ss_pred cEEEEeCCCCCCCCCCCH---HHHHHHHHhc--CCeEEEEEEecC
Confidence 45999999 988554 3456666654 566676665543
No 187
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=45.82 E-value=16 Score=30.65 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=24.8
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCC-ceeEEEEEc
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPD-HYLTHQVVN 279 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~-~v~~v~v~~ 279 (348)
.+++|.|.|+|...++ +.|.++|... | .|.++.+..
T Consensus 119 ~~~~l~v~nl~~~~~~---~~l~~~f~~~--G~~v~~v~i~~ 155 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSE---EDLKVLFSSN--GGVVKGFKFFQ 155 (198)
T ss_dssp CCCEEEECCCCTTCCH---HHHHHHHHHT--TSCCCEEEESS
T ss_pred CccEEEEeCCCCCCCH---HHHHHHHHHc--CCCceEEEEEe
Confidence 4688999999998543 3455666654 5 567777744
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=45.58 E-value=22 Score=31.70 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=28.5
Q ss_pred ccceEEEEecCCCC-CChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 238 YTTREVLVRNVPPD-PDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 238 is~rTVlV~~IP~~-~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
...++|.|.|+|.+ .++ +.|.++|... |.|.++.+.++
T Consensus 182 ~~~~~l~v~nlp~~~~~~---~~l~~~f~~~--G~i~~v~i~~~ 220 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDV---DALCRALSAV--HSPTFCQLACG 220 (284)
T ss_dssp TSCSEEEEECCCTTCCCH---HHHHHHTCSS--SCCSEEEEEEC
T ss_pred CCccEEEEecCCcccCCH---HHHHHHhhCC--CCeEEEEEEEC
Confidence 45689999999998 353 4677888765 66778877765
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=45.58 E-value=13 Score=30.46 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=22.6
Q ss_pred ccceEEEEecCCCCC-ChhHHHHHHhhhcc
Q 018945 238 YTTREVLVRNVPPDP-DESVTQLVEHFFLV 266 (348)
Q Consensus 238 is~rTVlV~~IP~~~-~~~l~~~l~~~f~~ 266 (348)
-.+++|.|.|||.+. ++.|++.+++++..
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~ 40 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAK 40 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCc
Confidence 357899999999984 56777788888753
No 190
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=44.79 E-value=13 Score=32.21 Aligned_cols=35 Identities=11% Similarity=-0.000 Sum_probs=22.3
Q ss_pred ceEEEEecCCCCCC-hhHHHHHHhhhcccCCCce--eEEEEEcC
Q 018945 240 TREVLVRNVPPDPD-ESVTQLVEHFFLVNHPDHY--LTHQVVNN 280 (348)
Q Consensus 240 ~rTVlV~~IP~~~~-~~l~~~l~~~f~~~~p~~v--~~v~v~~d 280 (348)
++||.|.|+|.+.+ +.| +++|... |.| .++.+..+
T Consensus 123 ~~~l~v~NLp~~~t~~~L----~~~F~~~--G~v~~~~v~~~~~ 160 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENF----FEICDEL--GVKRPTSVKVFSG 160 (205)
T ss_dssp CSEEEEEEECTTCCHHHH----HHHHHHH--TCCCCSEEEECSC
T ss_pred cceEEEeCCCCCCCHHHH----HHHHHhc--CCcceEEEEEEcC
Confidence 57899999999854 444 4455443 334 56666544
No 191
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=44.64 E-value=16 Score=32.70 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=29.0
Q ss_pred ccceEEEEecCCCC-CChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 238 YTTREVLVRNVPPD-PDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP~~-~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
...++|.|.|+|.. .++ +.|.++|... |.|.++.+.++.
T Consensus 208 ~~~~~l~v~nlp~~~~t~---~~l~~~F~~~--G~v~~v~i~~~~ 247 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDE---NLLRESFEGF--GSIEKINIPAGQ 247 (292)
T ss_dssp CTTTEEEEEEECTTTCCH---HHHHHHHGGG--SCEEEEECCSCC
T ss_pred CCCceEEEECCCcccCCH---HHHHHHHhcc--CCeeEEEEEecC
Confidence 34589999999998 664 4567777765 678888877653
No 192
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=43.66 E-value=23 Score=30.70 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=25.9
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhcccCCC-ceeEEEEEc
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVNHPD-HYLTHQVVN 279 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~-~v~~v~v~~ 279 (348)
.++||.|.|+|.+.++ +.|+++|... | .|.++.+..
T Consensus 150 ~~~~l~V~nlp~~~t~---~~l~~~f~~~--G~~i~~v~i~~ 186 (229)
T 2adc_A 150 PSATLHLSNIPPSVSE---EDLKVLFSSN--GGVVKGFKFFQ 186 (229)
T ss_dssp SCSEEEEECCCTTCCH---HHHHHHHHTT--SCCEEEEEECS
T ss_pred CCCEEEEeCCCccCCH---HHHHHHHHHc--CCCeeEEEEEE
Confidence 3688999999998543 3566677665 6 677877744
No 193
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=41.60 E-value=17 Score=27.05 Aligned_cols=26 Identities=15% Similarity=0.377 Sum_probs=19.1
Q ss_pred cceEEEEecCCCCC-ChhHHHHHHhhh
Q 018945 239 TTREVLVRNVPPDP-DESVTQLVEHFF 264 (348)
Q Consensus 239 s~rTVlV~~IP~~~-~~~l~~~l~~~f 264 (348)
..++|.|.|||.+. ++.|++.++.|.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G 42 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELF 42 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhC
Confidence 46899999999984 455666666654
No 194
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=41.48 E-value=34 Score=26.93 Aligned_cols=42 Identities=14% Similarity=0.025 Sum_probs=31.0
Q ss_pred ccceEEEEecCC--CC-C----ChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 238 YTTREVLVRNVP--PD-P----DESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 238 is~rTVlV~~IP--~~-~----~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
+.+|.|.+.|+= .+ . .+.+.+.|++.|.+. |.|.++.+.++.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf--G~V~~v~i~~~~ 53 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH--GGVIHIYVDKNS 53 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT--TCCSEEEECTTC
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc--CCEEEEEEecCC
Confidence 568899999993 33 1 246777888888765 788999887663
No 195
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=39.69 E-value=18 Score=23.74 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=17.9
Q ss_pred cccHHHHHHHHHHHHHHHhcc
Q 018945 326 TVDAIDFYTSKIETLKKEVSG 346 (348)
Q Consensus 326 kVDaidy~~~~l~~l~~~i~~ 346 (348)
|-|-|.|.++++..|.++|++
T Consensus 29 kkdliaylekeianlrkkiee 49 (49)
T 3he5_A 29 KKDLIAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 448899999999999999874
No 196
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=36.22 E-value=15 Score=29.39 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=18.8
Q ss_pred ccceEEEEecCCCCCChhHHHHHHhhhccc
Q 018945 238 YTTREVLVRNVPPDPDESVTQLVEHFFLVN 267 (348)
Q Consensus 238 is~rTVlV~~IP~~~~~~l~~~l~~~f~~~ 267 (348)
-.+++|.|.|+|.+..+ +.|+++|...
T Consensus 43 ~~~~~l~V~nLp~~~te---~~L~~~F~~~ 69 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQE---KDLKYIFGRY 69 (143)
T ss_dssp SCCSEEEEEEECTTCCH---HHHHHHHGGG
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHh
Confidence 35688999999998543 3455566554
No 197
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.82 E-value=18 Score=27.59 Aligned_cols=26 Identities=15% Similarity=0.400 Sum_probs=17.6
Q ss_pred ccceEEEEecCCCCCC-hhHHHHHHhh
Q 018945 238 YTTREVLVRNVPPDPD-ESVTQLVEHF 263 (348)
Q Consensus 238 is~rTVlV~~IP~~~~-~~l~~~l~~~ 263 (348)
..+++|.|.|||.+.+ +.|++.++.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~ 49 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARF 49 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh
Confidence 3568999999999854 4454444443
No 198
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.10 E-value=20 Score=28.51 Aligned_cols=36 Identities=6% Similarity=-0.075 Sum_probs=23.4
Q ss_pred cceEEEE--ecCCCCCChhHHHHHHhhhcccCCCceeEEEEEc
Q 018945 239 TTREVLV--RNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVN 279 (348)
Q Consensus 239 s~rTVlV--~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~ 279 (348)
.++++.| -|+|.+.++ +.|+++|... |.|.++.+..
T Consensus 24 pt~~L~V~Ng~L~~~~te---~~L~~~F~~f--G~v~~v~i~~ 61 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSR---NQLLPVLEKC--GLVDALLMPP 61 (114)
T ss_dssp CCSEEEEETCTGGGTCCH---HHHHHHHHHH--SCEEEEECCT
T ss_pred CCCEEEEECCCCCCCCCH---HHHHHHHHhc--CCeEEEEEeC
Confidence 4688999 559998543 2455555554 5677777653
No 199
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=31.29 E-value=44 Score=27.03 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=19.6
Q ss_pred cceEEEEecCCCCCChhHHHHHHhhhccc
Q 018945 239 TTREVLVRNVPPDPDESVTQLVEHFFLVN 267 (348)
Q Consensus 239 s~rTVlV~~IP~~~~~~l~~~l~~~f~~~ 267 (348)
..++|.|.|+|.+.++ +.|+++|...
T Consensus 98 ~~~~l~v~nlp~~~t~---~~l~~~F~~~ 123 (175)
T 1fje_B 98 AARTLLAKNLSFNITE---DELKEVFEDA 123 (175)
T ss_dssp GGGEEEEESCCSSCCH---HHHHHHCTTC
T ss_pred cCCEEEEeCCCCCCCH---HHHHHHHHhc
Confidence 4688999999998654 4567778764
No 200
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=30.05 E-value=46 Score=28.22 Aligned_cols=35 Identities=11% Similarity=0.084 Sum_probs=24.2
Q ss_pred eEEEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 241 REVLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 241 rTVlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
.+|.|.|+|...++ +.|+++|... |.|.++.+..+
T Consensus 47 l~l~VgNL~~~vte---d~L~~~Fs~f--G~V~~V~i~~k 81 (164)
T 1sjr_A 47 LRIIVENLFYPVTL---DVLHQIFSKF--GTVLKIITFTK 81 (164)
T ss_dssp EEEEECSCCSCCCH---HHHHHHHHHH--SCEEEEEEEES
T ss_pred EEEEEeCcCCCCCH---HHHHHHHHhc--CCEEEEEEEeC
Confidence 45789999998554 3456666655 77888887543
No 201
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=29.99 E-value=65 Score=25.74 Aligned_cols=33 Identities=3% Similarity=-0.119 Sum_probs=24.1
Q ss_pred EEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 243 VLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 243 VlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
|.|.|+|...++ +.|+++|... |.|.++.+...
T Consensus 28 l~V~NL~~~vt~---~~L~~~Fs~y--G~V~~v~i~~~ 60 (124)
T 2e5i_A 28 LSIQNPLYPITV---DVLYTVCNPV--GKVQRIVIFKR 60 (124)
T ss_dssp EEEESCCSCCCH---HHHHHHHTTT--SCEEEEEEEES
T ss_pred EEEcCcCCCCCH---HHHHHHHHhc--CCEEEEEEEeC
Confidence 458999988654 3577788765 77889887653
No 202
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=29.99 E-value=62 Score=26.21 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=24.8
Q ss_pred EEEecCCCCCChhHHHHHHhhhcccCCCceeEEEEEcC
Q 018945 243 VLVRNVPPDPDESVTQLVEHFFLVNHPDHYLTHQVVNN 280 (348)
Q Consensus 243 VlV~~IP~~~~~~l~~~l~~~f~~~~p~~v~~v~v~~d 280 (348)
|.|.|+|...++ +.|.++|... |.|.++.+..+
T Consensus 31 I~V~NL~~~vte---~~L~~lFs~y--G~V~~V~i~~~ 63 (130)
T 3zzy_A 31 IIVENLFYPVTL---DVLHQIFSKF--GTVLKIITFTK 63 (130)
T ss_dssp EEEESCCSCCCH---HHHHHHHTTS--SCEEEEEEEEE
T ss_pred EEECCCCCCCCH---HHHHHHHhCc--CCEEEEEEEcC
Confidence 669999988654 3577788765 77899887654
No 203
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=24.97 E-value=67 Score=24.41 Aligned_cols=20 Identities=15% Similarity=-0.105 Sum_probs=12.4
Q ss_pred HHHhhh-cccCCCceeEEEEEcC
Q 018945 259 LVEHFF-LVNHPDHYLTHQVVNN 280 (348)
Q Consensus 259 ~l~~~f-~~~~p~~v~~v~v~~d 280 (348)
.|++.| .+. |.|.++.++++
T Consensus 42 dl~~~f~~~~--G~V~~v~i~~~ 62 (104)
T 1jmt_A 42 EVFTEMEEKY--GEVEEMNVCDN 62 (104)
T ss_dssp HHHHHHHHHT--CCEEEEEECCS
T ss_pred HHHHHhhccC--CceEEEEEEeC
Confidence 344445 554 67888888765
No 204
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=23.97 E-value=57 Score=25.71 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=22.9
Q ss_pred eEEEEecCCCC--CChhHHHHHHhhhcccCC
Q 018945 241 REVLVRNVPPD--PDESVTQLVEHFFLVNHP 269 (348)
Q Consensus 241 rTVlV~~IP~~--~~~~l~~~l~~~f~~~~p 269 (348)
.|++++|+|.+ ..+.+++.+|++|....|
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~ 36 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDK 36 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCS
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCc
Confidence 56999999886 355678889999987654
No 205
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=21.72 E-value=1.6e+02 Score=19.46 Aligned_cols=13 Identities=15% Similarity=0.048 Sum_probs=8.8
Q ss_pred HHHHHHHHHHcCC
Q 018945 19 FAFLSAFAILRIQ 31 (348)
Q Consensus 19 ~~~lllF~~LR~~ 31 (348)
++.++.|.++|+|
T Consensus 25 ii~~~~~~~~RRR 37 (44)
T 2l2t_A 25 IVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 4445668888876
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.90 E-value=1.2e+02 Score=23.17 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=29.3
Q ss_pred cceEEEEecCCC----C-CChhHHHHHHhhhcccCCCceeEEEEEcCh
Q 018945 239 TTREVLVRNVPP----D-PDESVTQLVEHFFLVNHPDHYLTHQVVNNA 281 (348)
Q Consensus 239 s~rTVlV~~IP~----~-~~~~l~~~l~~~f~~~~p~~v~~v~v~~d~ 281 (348)
.+-||+|.-.|. + .++.+...|.+.|... |.|..+.++.|.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~--G~Vi~vr~~~d~ 51 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASF--GEVILIRFVEDK 51 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT--CCEEEEEECSSS
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhC--CCeEEEEEecCC
Confidence 356799998884 1 3566777788888875 678888776654
Done!