BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>018946
MKTSSTSCSLLNSLRFSTAITVSKKSYYHYQATQLRNHNCLSPFPSFSSTFPRNYNFHGK
CLHVNPFSAFSSSSGHDSQNPPRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCAN
WTAPIYTDLLRKSAGDEDRMLVLFFNRKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPL
IVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLA
TEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLI
AGSQSGVAGAQRIGMPCVVMRSRCITTLPVSKTQRLADMLCRILKSIT

High Scoring Gene Products

Symbol, full name Information P value
AT5G45170 protein from Arabidopsis thaliana 8.3e-83
AT3G48420 protein from Arabidopsis thaliana 1.9e-05

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  018946
        (348 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2153348 - symbol:AT5G45170 "AT5G45170" species...   588  8.3e-83   2
TAIR|locus:2101165 - symbol:AT3G48420 species:3702 "Arabi...   102  1.9e-05   2


>TAIR|locus:2153348 [details] [associations]
            symbol:AT5G45170 "AT5G45170" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
            [GO:0015979 "photosynthesis" evidence=RCA] EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009570 Gene3D:3.40.50.1000
            InterPro:IPR023214 SUPFAM:SSF56784 EMBL:BT011752 EMBL:AK222127
            IPI:IPI00533029 RefSeq:NP_199330.2 UniGene:At.27698
            ProteinModelPortal:Q6NMA9 STRING:Q6NMA9 PaxDb:Q6NMA9 PRIDE:Q6NMA9
            EnsemblPlants:AT5G45170.1 GeneID:834553 KEGG:ath:AT5G45170
            TAIR:At5g45170 eggNOG:NOG312108 HOGENOM:HOG000006280
            InParanoid:Q6NMA9 OMA:AFNVAFQ PhylomeDB:Q6NMA9
            ProtClustDB:CLSN2680441 Genevestigator:Q6NMA9 Uniprot:Q6NMA9
        Length = 372

 Score = 588 (212.0 bits), Expect = 8.3e-83, Sum P(2) = 8.3e-83
 Identities = 112/176 (63%), Positives = 143/176 (81%)

Query:   147 RKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI 206
             +KNA+DEFL SK  PLR GV++F+D+AY E +P+ ++TAY KSGD++A S+VE LG ER+
Sbjct:   163 KKNAMDEFLISKSLPLRSGVQEFIDNAYAEKVPVAIVTAYCKSGDKVALSIVEMLGQERL 222

Query:   207 SKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSV 266
               +K++G+ EVE+S+YGQ VLGKG+SS ++EQL  E +KA SA+KQ IAEEVASMLKLSV
Sbjct:   223 PNVKVIGDNEVEQSMYGQLVLGKGVSSSLEEQLVKEVKKAASAEKQRIAEEVASMLKLSV 282

Query:   267 DIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRS 322
             DIDT+S E L+KIV ALRA AE+   PV NC L+AGSQ GV+ A+ IGMPCVVMRS
Sbjct:   283 DIDTTSSERLEKIVVALRAAAEHIGLPVNNCVLVAGSQPGVSAAKMIGMPCVVMRS 338

 Score = 261 (96.9 bits), Expect = 8.3e-83, Sum P(2) = 8.3e-83
 Identities = 48/89 (53%), Positives = 62/89 (69%)

Query:    59 GKCLHVNPXXXXXXXXGHDSQNPPRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDC 118
             GKCL +            +  NP  + AV+LEVD V++D +   NRQAFNVAFQKLGLDC
Sbjct:    53 GKCLRLQRFSSICLSASREDVNPSEEFAVILEVDRVMIDTWS-SNRQAFNVAFQKLGLDC 111

Query:   119 ANWTAPIYTDLLRKSAGDEDRMLVLFFNR 147
             ANW  P+Y+DLLRK A DE++ML+L+FN+
Sbjct:   112 ANWPEPVYSDLLRKGAADEEKMLLLYFNQ 140


>TAIR|locus:2101165 [details] [associations]
            symbol:AT3G48420 species:3702 "Arabidopsis thaliana"
            [GO:0003824 "catalytic activity" evidence=IEA] [GO:0008152
            "metabolic process" evidence=IEA] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0016787 "hydrolase activity"
            evidence=IEA;ISS] [GO:0009941 "chloroplast envelope" evidence=IDA]
            [GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0006098
            "pentose-phosphate shunt" evidence=RCA] [GO:0010027 "thylakoid
            membrane organization" evidence=RCA] [GO:0010103 "stomatal complex
            morphogenesis" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
            process" evidence=RCA] [GO:0019252 "starch biosynthetic process"
            evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
            evidence=RCA] InterPro:IPR006402 GO:GO:0009570 EMBL:CP002686
            Gene3D:3.40.50.1000 InterPro:IPR023214 SUPFAM:SSF56784
            GO:GO:0009941 GO:GO:0016787 Pfam:PF13419 TIGRFAMs:TIGR01509
            ProtClustDB:PLN02779 EMBL:AF370250 EMBL:AY063066 EMBL:AK118118
            EMBL:AK175866 EMBL:AK176795 IPI:IPI00532424 RefSeq:NP_566903.1
            UniGene:At.3168 ProteinModelPortal:Q94K71 SMR:Q94K71 STRING:Q94K71
            PRIDE:Q94K71 ProMEX:Q94K71 EnsemblPlants:AT3G48420.1 GeneID:824000
            KEGG:ath:AT3G48420 TAIR:At3g48420 InParanoid:Q94K71 OMA:HREAFNE
            PhylomeDB:Q94K71 ArrayExpress:Q94K71 Genevestigator:Q94K71
            Uniprot:Q94K71
        Length = 319

 Score = 102 (41.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query:    86 AVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFF 145
             A+L + DGVLVD  + G+R +FN  F++  L+   W   +Y +LL K  G ++RM   +F
Sbjct:    78 ALLFDCDGVLVDTEKDGHRISFNDTFKERDLN-VTWDVDLYGELL-KIGGGKERMTA-YF 134

Query:   146 NR 147
             N+
Sbjct:   135 NK 136

 Score = 65 (27.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
 Identities = 26/99 (26%), Positives = 45/99 (45%)

Query:   226 VLGKGISSGVDEQL-ATEARKAVSAQKQ-EIAEEVASMLKLSVDIDTSSPESLDKIVAAL 283
             ++ + +++GV   + +T   KAVSA     +  E A  +K+    D    +  D  +  L
Sbjct:   183 LVDQALTNGVKVAVCSTSNEKAVSAIVSCLLGPERAEKIKIFAG-DVVPKKKPDPAIYNL 241

Query:   284 RAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRS 322
                AE        C ++  S  G+A A+  GM C+V +S
Sbjct:   242 --AAETLGVDPSKCVVVEDSAIGLAAAKAAGMTCIVTKS 278


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      348       317   0.00083  116 3  11 22  0.39    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  197 KB (2112 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.29u 0.15s 25.44t   Elapsed:  00:00:01
  Total cpu time:  25.29u 0.15s 25.44t   Elapsed:  00:00:01
  Start:  Fri May 10 12:19:56 2013   End:  Fri May 10 12:19:57 2013

Back to top