BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018946
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FE3|A Chain A, Structure Of Murine Cytosolic 5'-Nucleotidase Iii
Complexed With Uridinine Monophosphate
Length = 297
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 148 KNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERIS 207
K L E +A D L+ G E+F GIP+ + +A GD + V+ + G S
Sbjct: 128 KAKLKEIVADSDVMLKEGYENFFGKLQQHGIPVFIFSA--GIGD-VLEEVIRQAGVYH-S 183
Query: 208 KIKIVGN 214
+K+V N
Sbjct: 184 NVKVVSN 190
>pdb|2G07|A Chain A, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type
1, Phospho- Enzyme Intermediate Analog With Beryllium
Fluoride
pdb|2G07|B Chain B, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type
1, Phospho- Enzyme Intermediate Analog With Beryllium
Fluoride
Length = 297
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 148 KNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERIS 207
K L E +A D L+ G E+F GIP+ + +A GD + V+ + G S
Sbjct: 128 KAKLKEIVADSDVXLKEGYENFFGKLQQHGIPVFIFSA--GIGD-VLEEVIRQAGVYH-S 183
Query: 208 KIKIVGN 214
+K+V N
Sbjct: 184 NVKVVSN 190
>pdb|2BDU|A Chain A, X-Ray Structure Of A Cytosolic 5'-Nucleotidase Iii From
Mus Musculus Mm.158936
pdb|2BDU|B Chain B, X-Ray Structure Of A Cytosolic 5'-Nucleotidase Iii From
Mus Musculus Mm.158936
pdb|2G06|A Chain A, X-ray Structure Of Mouse Pyrimidine 5'-nucleotidase Type
1, With Bound Magnesium(ii)
pdb|2G06|B Chain B, X-ray Structure Of Mouse Pyrimidine 5'-nucleotidase Type
1, With Bound Magnesium(ii)
pdb|2G08|A Chain A, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type
1, Product- Transition Complex Analog With Aluminum
Fluoride
pdb|2G08|B Chain B, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type
1, Product- Transition Complex Analog With Aluminum
Fluoride
pdb|2G09|A Chain A, X-ray Structure Of Mouse Pyrimidine 5'-nucleotidase Type
1, Product Complex
pdb|2G09|B Chain B, X-ray Structure Of Mouse Pyrimidine 5'-nucleotidase Type
1, Product Complex
pdb|2G0A|A Chain A, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type 1
With Lead(Ii) Bound In Active Site
pdb|2G0A|B Chain B, X-Ray Structure Of Mouse Pyrimidine 5'-Nucleotidase Type 1
With Lead(Ii) Bound In Active Site
pdb|2Q4T|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
Cytosolic 5'-Nucleotidase Iii From Mus Musculus
Mm.158936
pdb|2Q4T|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
Cytosolic 5'-Nucleotidase Iii From Mus Musculus
Mm.158936
Length = 297
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 148 KNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERIS 207
K L E +A D L+ G E+F GIP+ + +A GD + V+ + G S
Sbjct: 128 KAKLKEIVADSDVXLKEGYENFFGKLQQHGIPVFIFSA--GIGD-VLEEVIRQAGVYH-S 183
Query: 208 KIKIVGN 214
+K+V N
Sbjct: 184 NVKVVSN 190
>pdb|3JXE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
pdb|3JXE|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
Tryptophanyl-Trna Synthetase In Complex With Trpamp
Length = 392
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 122 TAPIYTDLLRKSAGDEDRMLVLFFNRKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLI 181
T+P+ DLL K+A L +FF RK F + +D D + Y EG
Sbjct: 27 TSPLTEDLLEKTAELTKSELPIFFRRKF----FFSHRDY-------DLILKDYEEGRGFF 75
Query: 182 VLTAYGKSG 190
+ T G SG
Sbjct: 76 LYTGRGPSG 84
>pdb|2JGA|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Iii
In Complex With Phosphate And Magnesium
Length = 292
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 148 KNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTA 185
K L E +A D L+ G E+F D IP+ + +A
Sbjct: 123 KAKLKEIVAESDVMLKEGYENFFDKLQQHSIPVFIFSA 160
>pdb|2CN1|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Iii (
Nt5c3)(Casp Target)
pdb|2VKQ|A Chain A, Crystal Structure Of Human Cytosolic 5'-Nucleotidase Iii (
Cn-Iii, Nt5c3) In Complex With Beryllium Trifluoride
Length = 292
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 148 KNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTA 185
K L E +A D L+ G E+F D IP+ + +A
Sbjct: 123 KAKLKEIVAESDVMLKEGYENFFDKLQQHSIPVFIFSA 160
>pdb|3LYI|A Chain A, Pwwp Domain Of Human Bromodomain-Containing Protein 1
pdb|3LYI|B Chain B, Pwwp Domain Of Human Bromodomain-Containing Protein 1
Length = 126
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 132 KSAGDEDRMLVLFFNRKNALDEFLASKDAPLRPGVEDFVD-----DAYNEGIPLIVLTAY 186
++ DE LVLFF+ K + SK PL G+++ +D + N I V A+
Sbjct: 56 QTKSDEKLFLVLFFDNKRSWQWLPKSKMVPL--GIDETIDKLKMMEGRNSSIRKAVRIAF 113
Query: 187 GKSGDRIAR 195
++ + ++R
Sbjct: 114 DRAMNHLSR 122
>pdb|3LQW|A Chain A, Crystal Structure Of Deoxyuridine 5-Triphosphate
Nucleotidohydrolase From Entamoeba Histolytica
Length = 163
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 170 VDDAYNEGIPLIVLTAY-----GKSGDRIARSVVEKLGSERISKIK 210
+D+ Y I +I+ G+ GDRIA+ ++E++ RIS++K
Sbjct: 101 IDEDYRGEIKVILFNHSNEIFNGRKGDRIAQLIIERISYCRISEVK 146
>pdb|3QKY|A Chain A, Crystal Structure Of Rhodothermus Marinus Bamd
Length = 261
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 232 SSGVDEQLATEARKAVSA----QKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGA 287
+ + E A ARK A +++E+ E A + D +P + D +V A+RA
Sbjct: 137 TQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYI 196
Query: 288 EYAEKPVR 295
YAE+ VR
Sbjct: 197 AYAEQSVR 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,756,655
Number of Sequences: 62578
Number of extensions: 339737
Number of successful extensions: 1070
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1063
Number of HSP's gapped (non-prelim): 23
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)