Query 018946
Match_columns 348
No_of_seqs 198 out of 1828
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:24:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0637 Predicted phosphatase/ 100.0 9.9E-28 2.2E-32 221.0 17.2 178 84-325 2-190 (221)
2 PLN02770 haloacid dehalogenase 99.9 2.2E-26 4.7E-31 215.2 15.3 184 79-324 17-211 (248)
3 TIGR01422 phosphonatase phosph 99.9 7.7E-26 1.7E-30 211.3 18.3 178 84-325 2-205 (253)
4 PRK13226 phosphoglycolate phos 99.9 4.2E-26 9.1E-31 210.7 16.4 178 84-325 12-199 (229)
5 PLN03243 haloacid dehalogenase 99.9 5.1E-26 1.1E-30 214.7 17.1 180 80-322 20-210 (260)
6 TIGR03351 PhnX-like phosphonat 99.9 2.6E-26 5.6E-31 209.5 14.6 184 84-331 1-201 (220)
7 PRK13288 pyrophosphatase PpaX; 99.9 6.1E-26 1.3E-30 206.6 16.9 186 82-330 1-191 (214)
8 PRK11587 putative phosphatase; 99.9 9.9E-26 2.1E-30 206.3 15.0 176 82-324 1-185 (218)
9 COG0546 Gph Predicted phosphat 99.9 2.1E-25 4.6E-30 205.0 16.5 199 82-343 2-213 (220)
10 PRK13478 phosphonoacetaldehyde 99.9 4.8E-25 1E-29 208.0 18.9 181 82-325 2-207 (267)
11 TIGR01449 PGP_bact 2-phosphogl 99.9 2.4E-25 5.2E-30 201.5 16.2 181 87-330 1-194 (213)
12 PRK10826 2-deoxyglucose-6-phos 99.9 2.3E-25 5E-30 204.1 15.6 182 82-327 5-198 (222)
13 PLN02779 haloacid dehalogenase 99.9 5.9E-25 1.3E-29 210.0 17.7 191 82-332 38-257 (286)
14 TIGR01454 AHBA_synth_RP 3-amin 99.9 3.6E-25 7.8E-30 200.2 12.9 182 87-331 1-185 (205)
15 TIGR01990 bPGM beta-phosphoglu 99.9 9.4E-25 2E-29 193.2 14.7 170 86-321 1-185 (185)
16 PLN02575 haloacid dehalogenase 99.9 1.8E-24 3.9E-29 213.0 17.8 181 82-324 129-319 (381)
17 TIGR02009 PGMB-YQAB-SF beta-ph 99.9 1.5E-24 3.3E-29 191.9 14.7 171 84-320 1-185 (185)
18 PRK10563 6-phosphogluconate ph 99.9 2.3E-24 5E-29 196.9 16.0 176 83-323 3-188 (221)
19 TIGR02253 CTE7 HAD superfamily 99.9 7.1E-24 1.5E-28 193.2 18.6 178 84-326 2-200 (221)
20 PRK13225 phosphoglycolate phos 99.9 4.6E-24 1E-28 202.7 16.5 186 79-330 57-248 (273)
21 PLN02940 riboflavin kinase 99.9 3.2E-24 6.9E-29 212.8 15.4 180 83-326 10-199 (382)
22 PRK13222 phosphoglycolate phos 99.9 1.3E-23 2.9E-28 191.6 17.3 182 82-329 4-201 (226)
23 PRK10725 fructose-1-P/6-phosph 99.9 6.8E-24 1.5E-28 188.6 14.8 172 83-321 4-186 (188)
24 PRK13223 phosphoglycolate phos 99.9 2.5E-23 5.5E-28 197.3 18.2 186 83-331 12-211 (272)
25 PRK14988 GMP/IMP nucleotidase; 99.9 1.6E-23 3.5E-28 193.2 16.2 200 82-346 8-220 (224)
26 PRK09449 dUMP phosphatase; Pro 99.9 4.4E-23 9.5E-28 188.7 18.8 174 82-323 1-198 (224)
27 TIGR02254 YjjG/YfnB HAD superf 99.9 6.6E-23 1.4E-27 186.5 19.0 177 84-326 1-203 (224)
28 TIGR02252 DREG-2 REG-2-like, H 99.9 3E-23 6.5E-28 187.0 16.6 170 85-319 1-203 (203)
29 TIGR01428 HAD_type_II 2-haloal 99.9 3.5E-23 7.5E-28 186.1 13.2 106 159-324 90-195 (198)
30 PF13419 HAD_2: Haloacid dehal 99.9 3.8E-23 8.2E-28 178.7 11.0 167 87-320 1-176 (176)
31 PRK06698 bifunctional 5'-methy 99.9 1.6E-22 3.5E-27 204.9 16.6 194 82-339 239-445 (459)
32 PLN02919 haloacid dehalogenase 99.9 2.4E-22 5.3E-27 220.9 18.1 181 80-324 71-265 (1057)
33 PLN02811 hydrolase 99.9 6.3E-22 1.4E-26 181.5 14.5 189 91-347 1-206 (220)
34 PRK10748 flavin mononucleotide 99.9 7.3E-22 1.6E-26 183.5 13.5 176 83-325 9-212 (238)
35 TIGR01993 Pyr-5-nucltdase pyri 99.9 1.1E-21 2.4E-26 174.5 11.9 173 86-320 2-184 (184)
36 TIGR02247 HAD-1A3-hyp Epoxide 99.9 8.5E-22 1.8E-26 178.8 11.2 176 84-323 2-198 (211)
37 TIGR01548 HAD-SF-IA-hyp1 haloa 99.9 6E-21 1.3E-25 171.9 16.5 165 85-313 1-197 (197)
38 KOG3085 Predicted hydrolase (H 99.9 2.1E-21 4.5E-26 179.5 11.8 188 80-332 3-224 (237)
39 TIGR01509 HAD-SF-IA-v3 haloaci 99.8 4.6E-21 1E-25 168.7 11.5 100 160-320 84-183 (183)
40 KOG2914 Predicted haloacid-hal 99.8 4.3E-20 9.3E-25 169.8 15.9 179 82-322 8-197 (222)
41 COG1011 Predicted hydrolase (H 99.8 2.1E-20 4.6E-25 170.6 13.7 106 159-325 97-203 (229)
42 PRK09456 ?-D-glucose-1-phospha 99.8 1.7E-20 3.7E-25 169.3 12.4 107 160-326 83-190 (199)
43 TIGR01549 HAD-SF-IA-v1 haloaci 99.8 5.2E-20 1.1E-24 158.7 13.1 153 86-314 1-154 (154)
44 PHA02597 30.2 hypothetical pro 99.8 9.5E-20 2.1E-24 163.8 13.9 170 84-325 2-178 (197)
45 TIGR00338 serB phosphoserine p 99.8 2.2E-19 4.8E-24 163.6 16.2 178 81-319 11-193 (219)
46 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.8 3.2E-18 6.8E-23 153.2 16.6 182 83-324 3-193 (201)
47 PLN02954 phosphoserine phospha 99.8 1.2E-18 2.6E-23 159.3 13.9 183 82-322 10-197 (224)
48 TIGR01493 HAD-SF-IA-v2 Haloaci 99.8 2.9E-19 6.2E-24 157.2 6.6 158 86-313 1-175 (175)
49 PRK11133 serB phosphoserine ph 99.7 3.1E-17 6.8E-22 159.3 15.2 179 81-319 107-289 (322)
50 TIGR01691 enolase-ppase 2,3-di 99.7 5E-17 1.1E-21 149.9 15.1 114 151-326 83-201 (220)
51 TIGR00213 GmhB_yaeD D,D-heptos 99.7 2.1E-17 4.6E-22 146.8 12.1 137 160-347 25-174 (176)
52 PRK08942 D,D-heptose 1,7-bisph 99.7 2.7E-17 5.8E-22 146.5 11.1 112 160-325 28-151 (181)
53 TIGR01656 Histidinol-ppas hist 99.7 3E-17 6.4E-22 141.8 10.9 107 161-323 27-147 (147)
54 PRK09552 mtnX 2-hydroxy-3-keto 99.7 3.5E-16 7.7E-21 143.4 14.9 178 83-318 2-184 (219)
55 TIGR01662 HAD-SF-IIIA HAD-supe 99.7 1.3E-16 2.9E-21 134.5 10.6 100 161-321 25-131 (132)
56 TIGR01685 MDP-1 magnesium-depe 99.7 1.7E-17 3.7E-22 147.7 4.1 108 159-325 43-161 (174)
57 TIGR01672 AphA HAD superfamily 99.7 1.3E-15 2.9E-20 141.9 15.9 159 85-333 64-224 (237)
58 PRK13582 thrH phosphoserine ph 99.7 1.6E-15 3.4E-20 136.7 14.2 162 84-318 1-168 (205)
59 PRK06769 hypothetical protein; 99.7 3.2E-16 6.8E-21 139.2 9.2 111 160-326 27-142 (173)
60 TIGR01489 DKMTPPase-SF 2,3-dik 99.6 1.8E-14 3.9E-19 127.3 15.0 176 86-317 3-185 (188)
61 TIGR01664 DNA-3'-Pase DNA 3'-p 99.6 3.5E-15 7.6E-20 131.9 9.6 99 162-319 43-160 (166)
62 COG0560 SerB Phosphoserine pho 99.6 5.1E-14 1.1E-18 129.2 16.1 180 82-323 3-189 (212)
63 TIGR03333 salvage_mtnX 2-hydro 99.6 2.3E-14 5E-19 131.0 13.8 176 87-322 2-182 (214)
64 cd01427 HAD_like Haloacid deha 99.6 1.9E-14 4.1E-19 118.5 11.8 118 159-320 22-139 (139)
65 TIGR01261 hisB_Nterm histidino 99.6 1.2E-14 2.5E-19 128.0 8.8 107 160-324 28-150 (161)
66 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.5 6.1E-14 1.3E-18 126.1 12.7 114 160-322 86-199 (202)
67 TIGR01452 PGP_euk phosphoglyco 99.5 1.2E-14 2.6E-19 138.3 8.4 72 262-347 201-279 (279)
68 TIGR01488 HAD-SF-IB Haloacid D 99.5 1.1E-13 2.4E-18 121.4 13.3 111 154-313 67-177 (177)
69 KOG3109 Haloacid dehalogenase- 99.5 1.9E-13 4.1E-18 123.7 14.8 185 80-324 11-208 (244)
70 TIGR02137 HSK-PSP phosphoserin 99.5 3.2E-13 7E-18 123.1 16.2 168 85-324 2-174 (203)
71 TIGR01668 YqeG_hyp_ppase HAD s 99.5 9.1E-14 2E-18 123.1 10.3 105 159-331 41-146 (170)
72 PF00702 Hydrolase: haloacid d 99.5 3.7E-14 8.1E-19 127.4 7.6 88 160-314 126-215 (215)
73 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.5 4.8E-14 1E-18 132.8 7.7 107 163-326 122-229 (257)
74 PHA02530 pseT polynucleotide k 99.5 2.5E-13 5.4E-18 129.8 11.0 111 160-323 186-298 (300)
75 PRK11590 hypothetical protein; 99.5 1.4E-12 3E-17 119.2 15.0 180 83-322 5-204 (211)
76 TIGR01681 HAD-SF-IIIC HAD-supe 99.5 2.3E-13 4.9E-18 115.2 8.5 89 161-312 29-126 (128)
77 PRK11009 aphA acid phosphatase 99.5 7.3E-13 1.6E-17 123.5 12.5 107 160-332 113-223 (237)
78 PRK05446 imidazole glycerol-ph 99.5 3.6E-13 7.9E-18 132.2 11.0 109 160-322 29-149 (354)
79 PRK10444 UMP phosphatase; Prov 99.4 1.1E-12 2.4E-17 123.2 13.2 73 261-347 172-245 (248)
80 TIGR02726 phenyl_P_delta pheny 99.4 1.7E-13 3.8E-18 121.5 6.6 85 169-322 42-126 (169)
81 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.3 1E-11 2.2E-16 116.5 10.9 72 261-346 176-248 (249)
82 PF13242 Hydrolase_like: HAD-h 99.3 6.2E-13 1.3E-17 102.0 2.1 72 261-346 2-74 (75)
83 COG0647 NagD Predicted sugar p 99.3 4.7E-11 1E-15 113.1 12.5 174 160-347 23-261 (269)
84 TIGR01544 HAD-SF-IE haloacid d 99.3 9.9E-11 2.1E-15 111.3 14.2 121 148-313 108-230 (277)
85 PLN02645 phosphoglycolate phos 99.2 5E-11 1.1E-15 115.4 11.6 55 262-330 229-284 (311)
86 PRK08238 hypothetical protein; 99.2 3.7E-10 8.1E-15 115.3 15.7 154 85-322 11-166 (479)
87 COG2179 Predicted hydrolase of 99.2 3.9E-11 8.5E-16 104.7 7.2 95 159-322 44-139 (175)
88 smart00577 CPDc catalytic doma 99.2 2.4E-11 5.1E-16 105.2 5.3 95 160-318 44-139 (148)
89 KOG1615 Phosphoserine phosphat 99.2 3.5E-10 7.6E-15 101.0 12.1 178 84-320 16-198 (227)
90 TIGR01686 FkbH FkbH-like domai 99.2 1.3E-10 2.8E-15 112.9 9.9 90 162-316 32-125 (320)
91 PF06888 Put_Phosphatase: Puta 99.1 1.3E-09 2.7E-14 101.5 14.5 188 86-325 2-201 (234)
92 PF12689 Acid_PPase: Acid Phos 99.1 2.7E-10 5.8E-15 101.0 9.5 104 159-326 43-156 (169)
93 TIGR01670 YrbI-phosphatas 3-de 99.1 2.2E-10 4.7E-15 99.9 7.8 86 169-324 36-121 (154)
94 TIGR01663 PNK-3'Pase polynucle 99.1 3.6E-10 7.8E-15 116.3 10.0 95 162-315 198-305 (526)
95 TIGR01545 YfhB_g-proteo haloac 99.1 2.8E-09 6E-14 97.7 14.2 110 160-323 93-204 (210)
96 PRK09484 3-deoxy-D-manno-octul 99.0 1.6E-09 3.6E-14 97.0 7.5 83 169-321 56-138 (183)
97 KOG3040 Predicted sugar phosph 98.9 5.3E-09 1.2E-13 94.4 10.5 169 162-345 24-254 (262)
98 KOG2882 p-Nitrophenyl phosphat 98.9 7.3E-09 1.6E-13 98.3 11.6 73 261-347 222-299 (306)
99 TIGR01456 CECR5 HAD-superfamil 98.9 6.6E-09 1.4E-13 101.1 11.4 71 261-345 231-318 (321)
100 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.9 1E-09 2.2E-14 102.2 4.1 101 163-322 140-242 (242)
101 PRK10530 pyridoxal phosphate ( 98.9 2.4E-08 5.1E-13 93.7 12.4 36 283-318 204-239 (272)
102 TIGR01533 lipo_e_P4 5'-nucleot 98.9 2.2E-08 4.8E-13 95.0 11.7 51 157-207 114-164 (266)
103 COG0241 HisB Histidinol phosph 98.8 1.7E-08 3.8E-13 90.2 9.6 113 160-326 30-154 (181)
104 PF12710 HAD: haloacid dehalog 98.8 2.7E-08 5.9E-13 88.0 10.8 40 164-206 92-131 (192)
105 TIGR01460 HAD-SF-IIA Haloacid 98.8 9.7E-08 2.1E-12 88.8 13.6 49 261-323 186-236 (236)
106 PF09419 PGP_phosphatase: Mito 98.7 1.1E-07 2.3E-12 84.3 11.2 42 283-324 120-167 (168)
107 TIGR02244 HAD-IG-Ncltidse HAD 98.7 4.9E-08 1.1E-12 95.6 9.9 126 160-322 183-324 (343)
108 PTZ00445 p36-lilke protein; Pr 98.7 4.1E-08 8.8E-13 89.5 8.4 51 261-323 155-207 (219)
109 COG4229 Predicted enolase-phos 98.7 2.1E-07 4.5E-12 82.6 11.8 106 159-326 101-209 (229)
110 PF08645 PNK3P: Polynucleotide 98.7 4.4E-08 9.5E-13 86.1 7.6 98 162-318 30-153 (159)
111 COG4359 Uncharacterized conser 98.7 2.6E-07 5.7E-12 82.1 12.4 174 86-318 5-183 (220)
112 KOG3120 Predicted haloacid deh 98.7 9.5E-07 2.1E-11 80.7 15.6 191 83-325 12-214 (256)
113 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.6 4.6E-07 9.9E-12 84.4 10.8 93 160-315 23-116 (242)
114 TIGR01512 ATPase-IB2_Cd heavy 98.5 1.7E-07 3.7E-12 97.3 7.6 85 160-315 361-446 (536)
115 COG0561 Cof Predicted hydrolas 98.5 1.2E-06 2.7E-11 82.1 12.2 47 274-321 186-232 (264)
116 TIGR01482 SPP-subfamily Sucros 98.5 1E-06 2.2E-11 80.3 11.2 39 283-321 154-192 (225)
117 TIGR01525 ATPase-IB_hvy heavy 98.5 2.1E-07 4.4E-12 97.1 6.4 47 160-209 383-430 (556)
118 TIGR01684 viral_ppase viral ph 98.5 4E-07 8.7E-12 87.0 7.8 49 164-215 149-197 (301)
119 PRK01158 phosphoglycolate phos 98.4 8.3E-07 1.8E-11 81.3 8.2 39 283-321 162-200 (230)
120 TIGR02251 HIF-SF_euk Dullard-l 98.3 4.9E-07 1.1E-11 79.6 4.0 98 160-321 41-139 (162)
121 PF06941 NT5C: 5' nucleotidase 98.3 3.5E-07 7.6E-12 82.2 3.1 32 298-329 139-170 (191)
122 TIGR01511 ATPase-IB1_Cu copper 98.3 1.3E-06 2.8E-11 91.3 6.6 42 160-204 404-445 (562)
123 PRK00192 mannosyl-3-phosphogly 98.3 1.8E-05 3.9E-10 75.0 13.7 40 283-322 195-235 (273)
124 PF11019 DUF2608: Protein of u 98.2 2.5E-05 5.3E-10 73.8 13.3 119 160-324 80-212 (252)
125 TIGR02463 MPGP_rel mannosyl-3- 98.2 8.5E-06 1.8E-10 74.4 9.9 37 283-319 184-220 (221)
126 PRK10671 copA copper exporting 98.2 2.7E-06 6E-11 92.7 7.3 86 161-317 650-735 (834)
127 TIGR01487 SPP-like sucrose-pho 98.2 1.4E-05 3.1E-10 72.7 10.8 39 283-321 152-190 (215)
128 PRK15126 thiamin pyrimidine py 98.2 5.7E-06 1.2E-10 78.0 8.4 40 282-321 192-231 (272)
129 PF03767 Acid_phosphat_B: HAD 98.1 8E-06 1.7E-10 75.9 7.3 56 151-206 105-160 (229)
130 PHA03398 viral phosphatase sup 98.1 9E-06 1.9E-10 77.9 7.3 51 164-217 151-201 (303)
131 smart00775 LNS2 LNS2 domain. T 98.0 3.8E-05 8.3E-10 67.3 8.9 38 163-200 29-66 (157)
132 PRK11033 zntA zinc/cadmium/mer 97.9 3.7E-05 8E-10 82.9 9.4 43 161-206 568-610 (741)
133 COG4996 Predicted phosphatase 97.9 2E-05 4.4E-10 66.6 5.8 51 159-212 39-89 (164)
134 TIGR01675 plant-AP plant acid 97.9 7.4E-05 1.6E-09 69.5 10.0 90 83-206 76-165 (229)
135 COG1778 Low specificity phosph 97.8 3.7E-05 7.9E-10 67.0 6.3 84 169-321 43-126 (170)
136 PRK10187 trehalose-6-phosphate 97.8 0.00067 1.5E-08 64.4 15.3 41 283-323 179-222 (266)
137 PLN02177 glycerol-3-phosphate 97.8 0.00036 7.8E-09 72.0 14.0 104 162-323 111-217 (497)
138 TIGR01522 ATPase-IIA2_Ca golgi 97.8 4.1E-05 8.9E-10 84.1 7.5 113 161-318 528-641 (884)
139 TIGR01680 Veg_Stor_Prot vegeta 97.7 0.00011 2.4E-09 69.7 8.1 51 155-205 139-189 (275)
140 COG4087 Soluble P-type ATPase 97.7 0.00026 5.6E-09 60.0 8.9 116 159-344 28-143 (152)
141 TIGR01497 kdpB K+-transporting 97.5 0.00016 3.5E-09 76.9 6.4 44 161-207 446-489 (675)
142 PRK14010 potassium-transportin 97.5 0.00027 5.9E-09 75.2 8.0 45 161-208 441-485 (673)
143 COG2217 ZntA Cation transport 97.5 0.00028 6.1E-09 75.5 8.0 45 161-208 537-581 (713)
144 PF05116 S6PP: Sucrose-6F-phos 97.5 0.00038 8.2E-09 65.3 7.8 41 283-324 170-210 (247)
145 PRK14502 bifunctional mannosyl 97.5 0.00044 9.5E-09 73.2 8.9 38 282-319 617-656 (694)
146 PRK01122 potassium-transportin 97.4 0.00024 5.2E-09 75.7 6.9 45 161-208 445-489 (679)
147 COG3700 AphA Acid phosphatase 97.4 0.002 4.3E-08 57.5 10.6 109 163-335 116-226 (237)
148 KOG2630 Enolase-phosphatase E- 97.4 0.0057 1.2E-07 56.6 13.7 109 161-328 123-231 (254)
149 PF05761 5_nucleotid: 5' nucle 97.3 0.00053 1.1E-08 69.8 7.5 125 162-322 184-325 (448)
150 PF13344 Hydrolase_6: Haloacid 97.2 0.004 8.6E-08 50.5 10.0 52 160-211 13-64 (101)
151 TIGR02250 FCP1_euk FCP1-like p 97.2 0.00087 1.9E-08 58.7 6.2 51 160-214 57-108 (156)
152 TIGR02461 osmo_MPG_phos mannos 97.1 0.0059 1.3E-07 56.5 11.3 37 283-319 186-224 (225)
153 TIGR01116 ATPase-IIA1_Ca sarco 97.1 0.0017 3.8E-08 71.7 9.0 42 161-205 537-578 (917)
154 PRK12702 mannosyl-3-phosphogly 97.1 0.0016 3.5E-08 62.7 7.6 45 283-328 213-259 (302)
155 TIGR01524 ATPase-IIIB_Mg magne 97.1 0.0011 2.4E-08 72.9 7.1 113 161-320 515-628 (867)
156 TIGR01647 ATPase-IIIA_H plasma 97.0 0.0017 3.7E-08 70.4 7.7 117 161-319 442-559 (755)
157 PRK10517 magnesium-transportin 97.0 0.0017 3.6E-08 71.7 7.5 112 161-319 550-662 (902)
158 COG0474 MgtA Cation transport 97.0 0.0036 7.8E-08 69.3 10.0 120 160-323 546-667 (917)
159 PRK15122 magnesium-transportin 97.0 0.0019 4E-08 71.4 7.6 112 161-319 550-662 (903)
160 PF08235 LNS2: LNS2 (Lipin/Ned 96.9 0.015 3.4E-07 51.0 11.1 40 162-201 28-67 (157)
161 COG5663 Uncharacterized conser 96.8 0.0066 1.4E-07 53.6 8.5 39 286-328 129-168 (194)
162 TIGR01523 ATPase-IID_K-Na pota 96.8 0.0035 7.5E-08 70.3 8.6 115 161-319 646-770 (1053)
163 TIGR01517 ATPase-IIB_Ca plasma 96.7 0.0041 8.9E-08 69.0 8.1 114 161-319 579-693 (941)
164 COG2503 Predicted secreted aci 96.5 0.012 2.6E-07 54.9 8.4 88 85-206 80-168 (274)
165 TIGR02245 HAD_IIID1 HAD-superf 96.5 0.025 5.3E-07 51.5 10.1 40 161-204 45-84 (195)
166 PRK10513 sugar phosphate phosp 96.4 0.0086 1.9E-07 56.1 7.2 41 281-321 199-239 (270)
167 TIGR01657 P-ATPase-V P-type AT 96.4 0.023 5E-07 63.9 11.2 42 160-204 655-696 (1054)
168 TIGR01485 SPP_plant-cyano sucr 96.3 0.0073 1.6E-07 56.3 6.0 42 283-324 172-213 (249)
169 TIGR01106 ATPase-IIC_X-K sodiu 96.3 0.0088 1.9E-07 66.8 7.1 41 161-204 568-608 (997)
170 PRK10976 putative hydrolase; P 96.2 0.0042 9.2E-08 58.1 3.9 40 282-321 194-233 (266)
171 PRK10513 sugar phosphate phosp 96.2 0.005 1.1E-07 57.7 4.0 19 82-100 1-19 (270)
172 PRK10976 putative hydrolase; P 96.1 0.015 3.3E-07 54.3 6.8 34 168-204 26-59 (266)
173 KOG0207 Cation transport ATPas 96.1 0.015 3.2E-07 63.0 7.3 42 161-205 723-764 (951)
174 TIGR01452 PGP_euk phosphoglyco 96.0 0.055 1.2E-06 51.4 10.3 45 162-206 19-63 (279)
175 KOG0202 Ca2+ transporting ATPa 96.0 0.019 4.2E-07 61.7 7.6 121 160-324 583-707 (972)
176 TIGR00099 Cof-subfamily Cof su 95.9 0.0078 1.7E-07 56.1 4.1 39 282-320 192-230 (256)
177 TIGR01689 EcbF-BcbF capsule bi 95.9 0.027 5.8E-07 47.7 6.7 27 161-187 24-50 (126)
178 COG4030 Uncharacterized protei 95.8 0.12 2.7E-06 48.0 11.2 44 156-203 78-121 (315)
179 PRK03669 mannosyl-3-phosphogly 95.8 0.028 6E-07 53.1 7.0 47 273-320 183-232 (271)
180 PRK03669 mannosyl-3-phosphogly 95.7 0.011 2.5E-07 55.7 4.3 19 82-100 5-23 (271)
181 TIGR01484 HAD-SF-IIB HAD-super 95.7 0.012 2.6E-07 52.7 4.0 36 283-318 168-203 (204)
182 PF08282 Hydrolase_3: haloacid 95.7 0.014 3E-07 52.9 4.4 47 273-320 182-228 (254)
183 TIGR02471 sucr_syn_bact_C sucr 95.6 0.0096 2.1E-07 54.9 3.3 39 283-322 164-202 (236)
184 KOG2470 Similar to IMP-GMP spe 95.6 0.0055 1.2E-07 59.9 1.5 126 163-322 242-376 (510)
185 TIGR01652 ATPase-Plipid phosph 95.4 0.056 1.2E-06 60.9 9.0 41 161-204 631-671 (1057)
186 PLN02499 glycerol-3-phosphate 95.3 0.087 1.9E-06 54.2 9.0 52 169-229 101-155 (498)
187 PRK10444 UMP phosphatase; Prov 95.2 0.34 7.4E-06 45.5 12.2 50 162-211 18-67 (248)
188 PF05822 UMPH-1: Pyrimidine 5' 95.1 0.051 1.1E-06 51.1 6.4 63 148-214 77-139 (246)
189 TIGR01486 HAD-SF-IIB-MPGP mann 95.1 0.024 5.3E-07 52.9 4.3 40 283-322 181-222 (256)
190 TIGR00685 T6PP trehalose-phosp 95.0 0.049 1.1E-06 50.8 5.9 41 283-323 172-219 (244)
191 PLN02887 hydrolase family prot 94.8 0.029 6.3E-07 59.1 4.2 40 282-321 511-550 (580)
192 TIGR01494 ATPase_P-type ATPase 94.8 0.19 4E-06 51.9 10.0 40 161-203 347-386 (499)
193 PLN02887 hydrolase family prot 94.5 0.082 1.8E-06 55.7 6.6 34 168-204 332-365 (580)
194 PLN03190 aminophospholipid tra 94.4 0.24 5.1E-06 56.5 10.4 40 161-203 726-765 (1178)
195 PLN02382 probable sucrose-phos 93.8 0.11 2.4E-06 52.5 5.7 42 283-324 180-224 (413)
196 KOG1618 Predicted phosphatase 93.2 0.62 1.3E-05 45.4 9.3 34 64-99 17-50 (389)
197 PF03031 NIF: NLI interacting 93.0 0.098 2.1E-06 45.1 3.4 48 160-211 35-83 (159)
198 KOG2116 Protein involved in pl 93.0 0.38 8.3E-06 50.7 8.1 140 84-316 530-672 (738)
199 TIGR01458 HAD-SF-IIA-hyp3 HAD- 92.8 0.3 6.5E-06 46.0 6.7 53 162-214 22-74 (257)
200 KOG2961 Predicted hydrolase (H 92.4 1.3 2.8E-05 38.9 9.4 37 292-328 137-174 (190)
201 PTZ00174 phosphomannomutase; P 92.4 0.11 2.5E-06 48.3 3.3 36 283-322 193-232 (247)
202 COG5610 Predicted hydrolase (H 92.2 0.29 6.3E-06 49.7 6.0 107 164-328 102-209 (635)
203 COG2216 KdpB High-affinity K+ 91.5 0.28 6E-06 50.6 5.0 44 162-208 448-491 (681)
204 PF13344 Hydrolase_6: Haloacid 90.0 0.47 1E-05 38.3 4.2 32 87-118 1-33 (101)
205 KOG3128 Uncharacterized conser 89.7 0.59 1.3E-05 44.1 5.1 54 148-204 125-179 (298)
206 KOG2134 Polynucleotide kinase 89.4 0.15 3.3E-06 50.6 1.0 26 161-186 104-129 (422)
207 KOG3107 Predicted haloacid deh 89.1 13 0.00029 37.2 14.1 39 283-322 414-452 (468)
208 PF06189 5-nucleotidase: 5'-nu 88.6 6.1 0.00013 37.5 11.0 33 288-325 230-262 (264)
209 PLN02423 phosphomannomutase 88.6 0.36 7.7E-06 45.2 2.9 32 293-324 199-234 (245)
210 COG4502 5'(3')-deoxyribonucleo 88.1 0.51 1.1E-05 40.8 3.2 117 82-214 1-123 (180)
211 KOG0204 Calcium transporting A 87.7 2 4.3E-05 47.0 8.0 42 160-204 646-687 (1034)
212 KOG4549 Magnesium-dependent ph 86.0 3.4 7.4E-05 35.1 6.9 67 160-234 43-109 (144)
213 KOG0209 P-type ATPase [Inorgan 85.6 1.1 2.4E-05 48.8 4.7 154 159-324 673-836 (1160)
214 COG0647 NagD Predicted sugar p 85.4 2.4 5.1E-05 40.6 6.6 38 81-118 5-43 (269)
215 KOG2882 p-Nitrophenyl phosphat 85.1 8.1 0.00018 37.5 9.9 46 160-205 37-82 (306)
216 TIGR01670 YrbI-phosphatas 3-de 84.9 0.47 1E-05 41.0 1.4 15 84-98 1-15 (154)
217 PRK14501 putative bifunctional 84.5 1.8 3.9E-05 46.9 6.0 44 276-322 656-701 (726)
218 PRK09484 3-deoxy-D-manno-octul 83.7 0.58 1.3E-05 41.7 1.5 16 83-98 20-35 (183)
219 PLN02423 phosphomannomutase 83.0 1.3 2.7E-05 41.5 3.5 17 84-100 6-23 (245)
220 PRK00192 mannosyl-3-phosphogly 82.8 2 4.3E-05 40.5 4.9 40 164-206 24-63 (273)
221 COG1778 Low specificity phosph 82.2 0.7 1.5E-05 40.7 1.4 18 81-98 5-22 (170)
222 PF06506 PrpR_N: Propionate ca 80.0 4.5 9.8E-05 35.7 5.8 34 286-324 120-153 (176)
223 KOG2469 IMP-GMP specific 5'-nu 79.0 3.9 8.5E-05 41.1 5.5 121 167-322 204-334 (424)
224 KOG0206 P-type ATPase [General 78.4 4 8.6E-05 46.3 6.0 25 161-185 651-675 (1151)
225 TIGR01456 CECR5 HAD-superfamil 78.1 13 0.00028 36.1 8.9 44 161-204 16-64 (321)
226 TIGR02463 MPGP_rel mannosyl-3- 78.1 3.3 7.1E-05 37.4 4.5 39 163-204 18-56 (221)
227 cd04728 ThiG Thiazole synthase 77.9 19 0.00041 34.0 9.4 101 159-326 102-209 (248)
228 PTZ00174 phosphomannomutase; P 77.5 2.6 5.7E-05 39.1 3.8 20 81-100 2-21 (247)
229 KOG0323 TFIIF-interacting CTD 76.4 3.8 8.3E-05 43.6 4.9 53 160-216 200-253 (635)
230 TIGR01487 SPP-like sucrose-pho 75.9 4.5 9.8E-05 36.4 4.7 40 163-205 20-59 (215)
231 TIGR02461 osmo_MPG_phos mannos 75.8 2.8 6E-05 38.6 3.3 14 86-99 1-14 (225)
232 PLN02645 phosphoglycolate phos 75.7 2.7 5.9E-05 40.6 3.4 36 83-118 27-63 (311)
233 TIGR01658 EYA-cons_domain eyes 75.5 14 0.00029 35.1 7.7 45 282-326 218-262 (274)
234 PF05152 DUF705: Protein of un 74.5 5.5 0.00012 38.4 5.0 53 162-217 143-195 (297)
235 PRK00208 thiG thiazole synthas 74.3 27 0.00058 33.1 9.4 100 160-326 103-209 (250)
236 PRK01158 phosphoglycolate phos 73.1 6.2 0.00014 35.6 4.9 42 161-205 20-61 (230)
237 TIGR03470 HpnH hopanoid biosyn 72.8 23 0.0005 34.4 9.1 26 162-187 85-110 (318)
238 TIGR01457 HAD-SF-IIA-hyp2 HAD- 72.6 2.1 4.6E-05 40.0 1.7 17 84-100 1-17 (249)
239 PF03031 NIF: NLI interacting 72.4 2 4.4E-05 36.8 1.4 17 85-101 1-17 (159)
240 TIGR00099 Cof-subfamily Cof su 72.2 6.8 0.00015 36.2 5.1 39 164-205 19-57 (256)
241 PRK11840 bifunctional sulfur c 71.0 29 0.00063 34.1 9.1 100 160-326 177-283 (326)
242 TIGR00685 T6PP trehalose-phosp 70.8 2.5 5.4E-05 39.2 1.8 15 84-98 3-17 (244)
243 TIGR02329 propionate_PrpR prop 70.7 33 0.00072 35.9 10.2 33 286-323 140-172 (526)
244 PRK15126 thiamin pyrimidine py 69.7 7.4 0.00016 36.4 4.8 39 165-206 23-61 (272)
245 COG2179 Predicted hydrolase of 68.6 6.4 0.00014 35.0 3.7 36 82-117 26-64 (175)
246 PRK10530 pyridoxal phosphate ( 68.0 11 0.00023 35.0 5.4 40 163-205 22-61 (272)
247 PRK00994 F420-dependent methyl 67.8 50 0.0011 31.2 9.5 37 283-322 79-117 (277)
248 COG3882 FkbH Predicted enzyme 67.8 30 0.00064 35.9 8.7 93 162-315 256-348 (574)
249 TIGR01486 HAD-SF-IIB-MPGP mann 66.6 11 0.00023 35.1 5.1 38 165-205 20-57 (256)
250 TIGR01482 SPP-subfamily Sucros 66.3 10 0.00022 34.0 4.8 39 164-205 18-56 (225)
251 PRK08883 ribulose-phosphate 3- 66.0 1E+02 0.0023 28.3 11.5 39 163-202 92-130 (220)
252 COG2099 CobK Precorrin-6x redu 65.8 53 0.0011 31.2 9.4 45 160-209 111-155 (257)
253 PF05690 ThiG: Thiazole biosyn 65.7 36 0.00078 32.0 8.2 100 159-324 102-207 (247)
254 KOG0210 P-type ATPase [Inorgan 64.8 24 0.00052 38.2 7.6 25 161-185 658-682 (1051)
255 PLN02205 alpha,alpha-trehalose 64.7 18 0.00039 40.2 7.1 39 275-314 760-801 (854)
256 COG0731 Fe-S oxidoreductases [ 64.6 24 0.00051 34.3 7.0 40 157-202 88-128 (296)
257 PRK12702 mannosyl-3-phosphogly 63.6 12 0.00026 36.4 4.8 38 166-206 23-60 (302)
258 PLN02580 trehalose-phosphatase 63.5 17 0.00036 36.7 6.0 30 283-312 306-338 (384)
259 CHL00162 thiG thiamin biosynth 63.1 62 0.0013 30.8 9.3 101 160-326 117-223 (267)
260 TIGR01460 HAD-SF-IIA Haloacid 62.7 3.3 7.2E-05 38.3 0.9 15 87-101 1-15 (236)
261 PRK14501 putative bifunctional 62.6 17 0.00037 39.4 6.4 36 162-200 515-551 (726)
262 COG5083 SMP2 Uncharacterized p 62.4 4.8 0.0001 41.0 1.9 34 283-316 482-516 (580)
263 PF08282 Hydrolase_3: haloacid 61.8 13 0.00028 33.2 4.6 41 161-204 15-55 (254)
264 PRK15424 propionate catabolism 60.1 68 0.0015 33.8 10.1 33 285-322 149-181 (538)
265 KOG3189 Phosphomannomutase [Li 59.0 9.1 0.0002 35.2 2.9 30 83-113 10-39 (252)
266 PRK06769 hypothetical protein; 58.9 9.4 0.0002 33.5 3.0 15 83-97 3-17 (173)
267 COG4850 Uncharacterized conser 58.4 38 0.00082 33.4 7.2 36 160-199 195-231 (373)
268 TIGR01668 YqeG_hyp_ppase HAD s 58.2 9.2 0.0002 33.5 2.9 19 82-100 23-41 (170)
269 TIGR02471 sucr_syn_bact_C sucr 57.3 4.6 0.0001 37.0 0.8 15 86-100 1-15 (236)
270 PF04123 DUF373: Domain of unk 56.2 42 0.00092 33.3 7.3 37 283-321 90-128 (344)
271 COG0036 Rpe Pentose-5-phosphat 54.2 1.9E+02 0.004 27.0 10.9 43 160-203 92-134 (220)
272 TIGR02468 sucrsPsyn_pln sucros 53.6 12 0.00027 42.2 3.5 42 281-322 959-1002(1050)
273 KOG0391 SNF2 family DNA-depend 51.2 32 0.0007 39.5 6.0 44 283-326 1315-1359(1958)
274 PLN02151 trehalose-phosphatase 51.1 12 0.00026 37.2 2.7 30 283-312 274-306 (354)
275 PLN03017 trehalose-phosphatase 50.3 14 0.0003 37.0 2.9 32 83-114 110-145 (366)
276 COG1877 OtsB Trehalose-6-phosp 49.5 10 0.00022 36.3 1.8 43 283-325 187-232 (266)
277 PLN02580 trehalose-phosphatase 49.5 10 0.00022 38.2 1.8 16 84-99 119-134 (384)
278 COG3769 Predicted hydrolase (H 48.3 20 0.00044 33.5 3.4 25 296-321 211-235 (274)
279 PTZ00445 p36-lilke protein; Pr 48.2 13 0.00027 34.5 2.1 37 82-118 41-94 (219)
280 PRK13762 tRNA-modifying enzyme 47.7 29 0.00062 33.9 4.7 27 161-187 142-168 (322)
281 TIGR01484 HAD-SF-IIB HAD-super 47.7 30 0.00065 30.6 4.5 36 163-201 19-54 (204)
282 KOG0203 Na+/K+ ATPase, alpha s 47.1 59 0.0013 36.1 7.1 41 160-203 589-629 (1019)
283 smart00577 CPDc catalytic doma 46.9 13 0.00027 31.8 1.8 16 84-99 2-17 (148)
284 TIGR02826 RNR_activ_nrdG3 anae 46.5 31 0.00067 29.8 4.2 35 164-200 75-109 (147)
285 PRK08005 epimerase; Validated 45.3 1.1E+02 0.0025 28.0 8.0 37 163-200 92-128 (210)
286 TIGR01261 hisB_Nterm histidino 45.2 13 0.00027 32.5 1.6 15 85-99 2-16 (161)
287 PF13580 SIS_2: SIS domain; PD 44.0 82 0.0018 26.4 6.4 39 283-321 92-137 (138)
288 COG2022 ThiG Uncharacterized e 43.0 1.7E+02 0.0036 27.7 8.6 102 159-326 109-216 (262)
289 PRK05301 pyrroloquinoline quin 42.1 48 0.001 32.7 5.4 43 161-204 74-116 (378)
290 TIGR03151 enACPred_II putative 42.0 1.3E+02 0.0029 29.1 8.3 47 283-332 153-201 (307)
291 TIGR02109 PQQ_syn_pqqE coenzym 41.9 50 0.0011 32.2 5.4 42 162-204 66-107 (358)
292 PLN02382 probable sucrose-phos 41.5 29 0.00064 35.1 3.8 16 83-98 8-23 (413)
293 PRK08745 ribulose-phosphate 3- 40.9 3E+02 0.0064 25.5 11.1 37 163-200 96-132 (223)
294 PF02350 Epimerase_2: UDP-N-ac 40.0 1.2E+02 0.0027 29.7 7.9 39 283-328 252-291 (346)
295 PF04007 DUF354: Protein of un 39.8 2.5E+02 0.0054 27.7 9.9 36 166-205 16-51 (335)
296 PLN02334 ribulose-phosphate 3- 38.6 1.9E+02 0.0041 26.4 8.5 31 296-326 176-207 (229)
297 PLN02205 alpha,alpha-trehalose 38.3 18 0.00039 40.2 1.8 17 83-99 595-611 (854)
298 PRK13125 trpA tryptophan synth 37.8 2.5E+02 0.0055 26.0 9.2 29 297-325 187-218 (244)
299 PF02350 Epimerase_2: UDP-N-ac 36.9 2.9E+02 0.0062 27.1 9.9 64 281-346 57-124 (346)
300 TIGR03365 Bsubt_queE 7-cyano-7 36.2 32 0.0007 31.9 2.9 25 163-187 86-110 (238)
301 PF02358 Trehalose_PPase: Treh 35.7 17 0.00037 33.3 1.0 10 88-97 1-10 (235)
302 TIGR02251 HIF-SF_euk Dullard-l 34.8 23 0.0005 30.8 1.6 16 85-100 2-17 (162)
303 cd01766 Ufm1 Urm1-like ubiquit 34.5 53 0.0012 25.2 3.3 36 283-318 32-67 (82)
304 TIGR02495 NrdG2 anaerobic ribo 34.4 87 0.0019 27.4 5.3 26 162-187 75-100 (191)
305 COG0019 LysA Diaminopimelate d 34.1 2E+02 0.0042 29.1 8.3 32 291-322 93-126 (394)
306 PF05152 DUF705: Protein of un 34.0 27 0.00059 33.7 2.0 20 81-100 119-138 (297)
307 PRK10076 pyruvate formate lyas 33.5 76 0.0016 29.1 4.9 37 162-199 51-88 (213)
308 TIGR02250 FCP1_euk FCP1-like p 33.4 29 0.00062 30.2 2.0 19 83-101 5-23 (156)
309 TIGR01485 SPP_plant-cyano sucr 33.0 48 0.001 30.5 3.6 38 165-205 25-62 (249)
310 PRK08091 ribulose-phosphate 3- 32.6 4.2E+02 0.009 24.7 10.0 37 163-200 102-140 (228)
311 cd07043 STAS_anti-anti-sigma_f 32.2 91 0.002 23.5 4.5 37 167-208 60-96 (99)
312 KOG1618 Predicted phosphatase 32.1 54 0.0012 32.4 3.7 59 261-326 269-345 (389)
313 PRK09348 glyQ glycyl-tRNA synt 31.6 42 0.0009 32.0 2.8 49 262-321 84-135 (283)
314 PF04309 G3P_antiterm: Glycero 29.9 4.1E+02 0.0088 23.8 9.0 107 167-322 61-170 (175)
315 PF07859 Abhydrolase_3: alpha/ 29.9 46 0.00099 29.2 2.7 36 271-306 44-82 (211)
316 PF02879 PGM_PMM_II: Phosphogl 29.8 2.7E+02 0.0059 21.7 7.5 34 169-204 13-47 (104)
317 cd00733 GlyRS_alpha_core Class 29.7 56 0.0012 31.0 3.3 49 262-321 80-131 (279)
318 PRK14502 bifunctional mannosyl 29.5 81 0.0017 34.3 4.9 36 167-205 439-474 (694)
319 TIGR02886 spore_II_AA anti-sig 29.5 1.1E+02 0.0025 23.8 4.8 36 168-208 62-97 (106)
320 COG1212 KdsB CMP-2-keto-3-deox 29.3 1.4E+02 0.003 28.2 5.7 56 263-326 20-75 (247)
321 PTZ00170 D-ribulose-5-phosphat 28.9 2.4E+02 0.0051 26.0 7.4 32 296-327 174-207 (228)
322 TIGR00388 glyQ glycyl-tRNA syn 28.7 52 0.0011 31.5 2.9 49 262-321 81-132 (293)
323 PF03671 Ufm1: Ubiquitin fold 28.6 18 0.00039 27.6 -0.1 36 274-312 26-61 (76)
324 CHL00200 trpA tryptophan synth 28.0 4.8E+02 0.01 24.7 9.4 27 298-324 205-234 (263)
325 COG0106 HisA Phosphoribosylfor 27.9 3.5E+02 0.0075 25.5 8.2 37 283-322 183-222 (241)
326 cd06831 PLPDE_III_ODC_like_AZI 27.5 6E+02 0.013 25.4 10.6 33 289-321 75-109 (394)
327 PRK11145 pflA pyruvate formate 27.2 1E+02 0.0023 28.2 4.7 26 162-187 83-109 (246)
328 KOG1359 Glycine C-acetyltransf 26.6 2E+02 0.0043 28.4 6.4 64 283-346 328-408 (417)
329 PRK11303 DNA-binding transcrip 26.4 5.2E+02 0.011 24.1 9.5 37 285-321 255-292 (328)
330 TIGR00262 trpA tryptophan synt 26.3 3.3E+02 0.0071 25.6 8.0 39 283-325 190-231 (256)
331 PLN03063 alpha,alpha-trehalose 26.0 38 0.00083 37.3 1.8 15 84-98 507-521 (797)
332 PF14336 DUF4392: Domain of un 25.9 87 0.0019 30.2 4.0 39 163-203 62-100 (291)
333 COG2237 Predicted membrane pro 25.7 2E+02 0.0043 28.7 6.5 22 165-186 52-75 (364)
334 PF04413 Glycos_transf_N: 3-De 25.6 82 0.0018 28.1 3.6 22 286-307 163-184 (186)
335 PLN03064 alpha,alpha-trehalose 25.5 40 0.00086 37.9 1.8 16 84-99 591-606 (934)
336 PF03102 NeuB: NeuB family; I 25.3 1.7E+02 0.0037 27.5 5.7 34 166-201 102-135 (241)
337 TIGR00640 acid_CoA_mut_C methy 25.3 1.1E+02 0.0023 25.9 4.0 44 163-208 67-111 (132)
338 TIGR00377 ant_ant_sig anti-ant 25.0 1.4E+02 0.0029 23.3 4.4 37 168-209 66-102 (108)
339 TIGR02494 PFLE_PFLC glycyl-rad 24.6 1E+02 0.0022 29.2 4.2 26 162-187 138-164 (295)
340 PF02606 LpxK: Tetraacyldisacc 24.3 50 0.0011 32.4 2.0 24 163-186 51-74 (326)
341 PRK14021 bifunctional shikimat 24.0 7.7E+02 0.017 25.8 11.0 35 289-323 264-304 (542)
342 COG1454 EutG Alcohol dehydroge 24.0 3.2E+02 0.0069 27.5 7.7 41 164-204 14-56 (377)
343 PF00834 Ribul_P_3_epim: Ribul 23.8 1.7E+02 0.0037 26.5 5.4 38 283-322 156-195 (201)
344 PF01861 DUF43: Protein of unk 23.7 2.7E+02 0.0058 26.3 6.7 68 253-321 5-73 (243)
345 PF09001 DUF1890: Domain of un 23.6 4.8E+02 0.01 22.5 7.6 41 163-209 13-54 (139)
346 TIGR03278 methan_mark_10 putat 23.4 1.4E+02 0.0031 30.2 5.1 45 161-205 86-131 (404)
347 PRK05752 uroporphyrinogen-III 23.2 2.4E+02 0.0053 26.0 6.4 23 161-183 10-32 (255)
348 COG0241 HisB Histidinol phosph 22.7 54 0.0012 29.5 1.8 17 84-100 5-21 (181)
349 cd02071 MM_CoA_mut_B12_BD meth 22.7 1.3E+02 0.0028 24.7 4.0 46 162-209 63-109 (122)
350 TIGR02668 moaA_archaeal probab 21.9 1.5E+02 0.0032 28.1 4.8 26 162-187 69-95 (302)
351 KOG3483 Uncharacterized conser 21.8 88 0.0019 24.2 2.5 43 273-318 36-78 (94)
352 PF02254 TrkA_N: TrkA-N domain 21.8 3.9E+02 0.0085 20.8 7.5 26 295-320 90-115 (116)
353 COG1663 LpxK Tetraacyldisaccha 21.5 2.5E+02 0.0053 27.9 6.2 24 163-186 63-86 (336)
354 CHL00076 chlB photochlorophyll 21.4 9.2E+02 0.02 25.1 10.8 36 283-323 366-401 (513)
355 cd05008 SIS_GlmS_GlmD_1 SIS (S 21.4 1.2E+02 0.0025 24.4 3.5 24 163-186 59-82 (126)
356 cd05014 SIS_Kpsf KpsF-like pro 21.1 91 0.002 25.2 2.7 24 163-186 60-83 (128)
357 PF01591 6PF2K: 6-phosphofruct 21.1 1.3E+02 0.0029 27.8 4.1 104 105-219 30-139 (222)
358 COG1180 PflA Pyruvate-formate 20.9 1.4E+02 0.0031 28.2 4.3 27 162-188 97-123 (260)
359 COG4126 Hydantoin racemase [Am 20.9 5.6E+02 0.012 24.0 8.0 41 166-207 98-138 (230)
360 cd08193 HVD 5-hydroxyvalerate 20.7 6.9E+02 0.015 24.6 9.4 33 292-324 82-135 (376)
361 PF01740 STAS: STAS domain; I 20.6 1.3E+02 0.0029 23.8 3.6 36 167-207 70-105 (117)
362 PRK10537 voltage-gated potassi 20.5 8.8E+02 0.019 24.4 10.3 36 286-322 322-357 (393)
363 cd04906 ACT_ThrD-I_1 First of 20.1 1.7E+02 0.0036 22.4 3.9 20 166-185 55-74 (85)
364 COG0263 ProB Glutamate 5-kinas 20.1 5.4E+02 0.012 25.8 8.2 35 165-205 32-66 (369)
No 1
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.95 E-value=9.9e-28 Score=221.03 Aligned_cols=178 Identities=24% Similarity=0.307 Sum_probs=138.1
Q ss_pred ceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHHhh---------HHHHHHH-
Q 018946 84 DLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFN---------RKNALDE- 153 (348)
Q Consensus 84 ~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~- 153 (348)
+++|||||||||+|++.. |.++|.++++++|+. .+.+.+....+............... ..+.+.+
T Consensus 2 ~~avIFD~DGvLvDse~~-~~~a~~~~~~~~g~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (221)
T COG0637 2 IKAVIFDMDGTLVDSEPL-HARAWLEALKEYGIE---ISDEEIRELHGGGIARIIDLLRKLAAGEDPADLAELERLLYEA 77 (221)
T ss_pred CcEEEEcCCCCcCcchHH-HHHHHHHHHHHcCCC---CCHHHHHHHHCCChHHHHHHHHHHhcCCcccCHHHHHHHHHHH
Confidence 579999999999999998 999999999999997 55555555544332222222111110 0111111
Q ss_pred -HHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhccccccccccc
Q 018946 154 -FLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGIS 232 (348)
Q Consensus 154 -~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~ 232 (348)
.......++.||+.++|+.|+++|++++++|++ ....+...++.+|+.++|+.++.+. ++..
T Consensus 78 ~~~~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s---~~~~~~~~L~~~gl~~~f~~~v~~~-dv~~------------- 140 (221)
T COG0637 78 EALELEGLKPIPGVVELLEQLKARGIPLAVASSS---PRRAAERVLARLGLLDYFDVIVTAD-DVAR------------- 140 (221)
T ss_pred HHhhhcCCCCCccHHHHHHHHHhcCCcEEEecCC---hHHHHHHHHHHccChhhcchhccHH-HHhc-------------
Confidence 122346789999999999999999999999994 6689999999999999998764333 2222
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHH
Q 018946 233 SGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQR 312 (348)
Q Consensus 233 ~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~ 312 (348)
+||+|++ |..++++||++|++||.|+|+++||+||++
T Consensus 141 -----------------------------~KP~Pd~--------------yL~Aa~~Lgv~P~~CvviEDs~~Gi~Aa~a 177 (221)
T COG0637 141 -----------------------------GKPAPDI--------------YLLAAERLGVDPEECVVVEDSPAGIQAAKA 177 (221)
T ss_pred -----------------------------CCCCCHH--------------HHHHHHHcCCChHHeEEEecchhHHHHHHH
Confidence 2999999 999999999999999999999999999999
Q ss_pred cCCcEEEECCCCC
Q 018946 313 IGMPCVVMRSRCI 325 (348)
Q Consensus 313 aG~~~i~v~~~~~ 325 (348)
+||.+|++..+..
T Consensus 178 AGm~vv~v~~~~~ 190 (221)
T COG0637 178 AGMRVVGVPAGHD 190 (221)
T ss_pred CCCEEEEecCCCC
Confidence 9999999998444
No 2
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.94 E-value=2.2e-26 Score=215.23 Aligned_cols=184 Identities=21% Similarity=0.257 Sum_probs=136.1
Q ss_pred CCCCCceEEEEecCCccccccccChHHHHHHHHHHcCCCC-CCCCHHHH-HHHHhcccCcHHHHH--------HHHh-hH
Q 018946 79 QNPPRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDC-ANWTAPIY-TDLLRKSAGDEDRML--------VLFF-NR 147 (348)
Q Consensus 79 ~~~~~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~-~~~~~~~~-~~l~~~~~~~~~~~~--------~~~~-~~ 147 (348)
+...++++||||+||||+|+... +..+|+++++++|++. ..++.+.+ ..+.+.......... .... ..
T Consensus 17 ~~~~~~k~viFDlDGTLiDs~~~-~~~a~~~~~~~~g~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (248)
T PLN02770 17 SGLAPLEAVLFDVDGTLCDSDPL-HYYAFREMLQEINFNGGVPITEEFFVENIAGKHNEDIALGLFPDDLERGLKFTDDK 95 (248)
T ss_pred cccCccCEEEEcCCCccCcCHHH-HHHHHHHHHHHhccccCCCCCHHHHHHHcCCCCHHHHHHHHcCcchhhHHHHHHHH
Confidence 34456789999999999999987 8999999999987531 02444332 222332111100000 0000 00
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccc
Q 018946 148 KNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVL 227 (348)
Q Consensus 148 ~~~~~~~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~ 227 (348)
...|.++.. ...+++||+.++|+.|+++|++++|+||+ ....++..++++|+.++|+.++.+. ++..
T Consensus 96 ~~~y~~~~~-~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~---~~~~~~~~l~~~gl~~~Fd~iv~~~-~~~~-------- 162 (248)
T PLN02770 96 EALFRKLAS-EQLKPLNGLYKLKKWIEDRGLKRAAVTNA---PRENAELMISLLGLSDFFQAVIIGS-ECEH-------- 162 (248)
T ss_pred HHHHHHHHH-hcCCcCccHHHHHHHHHHcCCeEEEEeCC---CHHHHHHHHHHcCChhhCcEEEecC-cCCC--------
Confidence 223333332 34788999999999999999999999995 6789999999999999998765433 2211
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 018946 228 GKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGV 307 (348)
Q Consensus 228 g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di 307 (348)
.||+|++ |..+++++|++|++|+||||+..|+
T Consensus 163 ----------------------------------~KP~p~~--------------~~~a~~~~~~~~~~~l~vgDs~~Di 194 (248)
T PLN02770 163 ----------------------------------AKPHPDP--------------YLKALEVLKVSKDHTFVFEDSVSGI 194 (248)
T ss_pred ----------------------------------CCCChHH--------------HHHHHHHhCCChhHEEEEcCCHHHH
Confidence 2999999 9999999999999999999999999
Q ss_pred HHHHHcCCcEEEECCCC
Q 018946 308 AGAQRIGMPCVVMRSRC 324 (348)
Q Consensus 308 ~aA~~aG~~~i~v~~~~ 324 (348)
++|+++||++|++.++.
T Consensus 195 ~aA~~aGi~~i~v~~g~ 211 (248)
T PLN02770 195 KAGVAAGMPVVGLTTRN 211 (248)
T ss_pred HHHHHCCCEEEEEeCCC
Confidence 99999999999998875
No 3
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.94 E-value=7.7e-26 Score=211.30 Aligned_cols=178 Identities=20% Similarity=0.171 Sum_probs=131.2
Q ss_pred ceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHH-------H---HHHHhh----H--
Q 018946 84 DLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDR-------M---LVLFFN----R-- 147 (348)
Q Consensus 84 ~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~-------~---~~~~~~----~-- 147 (348)
+++||||+||||+|+....+..+|+++++++|++ ++.+.+...++........ . ....++ .
T Consensus 2 ~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~---~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (253)
T TIGR01422 2 IEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQ---ITLEEARGPMGLGKWDHIRALLKMPAVAERWRAKFGRLPTEAD 78 (253)
T ss_pred ceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCC---ccHHHHHHhcCccHHHHHHHHhcCHHHHHHHHHHhCCCCCHHH
Confidence 5799999999999986533578999999999986 4544444443322100000 0 000000 0
Q ss_pred ----HHHHH----HHHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccc-hheeecchhhh
Q 018946 148 ----KNALD----EFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERIS-KIKIVGNEEVE 218 (348)
Q Consensus 148 ----~~~~~----~~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f-~~~i~~~~e~~ 218 (348)
...+. +.+. ....++||+.++|+.|+++|++++|+||+ ....++.+++++|+..+| +.+ ++.+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~-~~~~~~pg~~e~L~~L~~~g~~l~IvT~~---~~~~~~~~l~~~gl~~~f~d~i-i~~~~~~ 153 (253)
T TIGR01422 79 IEAIYEAFEPLQLAKLA-EYSSPIPGVIEVIAYLRARGIKIGSTTGY---TREMMDVVAPEAALQGYRPDYN-VTTDDVP 153 (253)
T ss_pred HHHHHHHHHHHHHHHHH-hcCccCCCHHHHHHHHHHCCCeEEEECCC---cHHHHHHHHHHHHhcCCCCceE-EccccCC
Confidence 11222 2222 34688999999999999999999999995 678899999999999886 544 4444332
Q ss_pred hhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCC-CCcE
Q 018946 219 RSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKP-VRNC 297 (348)
Q Consensus 219 ~~~~~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~-p~~~ 297 (348)
. .||+|++ |..+++++|+. |++|
T Consensus 154 ~------------------------------------------~KP~p~~--------------~~~a~~~l~~~~~~~~ 177 (253)
T TIGR01422 154 A------------------------------------------GRPAPWM--------------ALKNAIELGVYDVAAC 177 (253)
T ss_pred C------------------------------------------CCCCHHH--------------HHHHHHHcCCCCchhe
Confidence 2 2999999 99999999995 9999
Q ss_pred EEEecCHhhHHHHHHcCCcEEEECCCCC
Q 018946 298 FLIAGSQSGVAGAQRIGMPCVVMRSRCI 325 (348)
Q Consensus 298 i~VGDs~~Di~aA~~aG~~~i~v~~~~~ 325 (348)
+||||+.+|+.+|+++||.+|+|.++..
T Consensus 178 l~IGDs~~Di~aA~~aGi~~i~v~~g~~ 205 (253)
T TIGR01422 178 VKVGDTVPDIEEGRNAGMWTVGLILSSN 205 (253)
T ss_pred EEECCcHHHHHHHHHCCCeEEEEecCCc
Confidence 9999999999999999999999998875
No 4
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.94 E-value=4.2e-26 Score=210.65 Aligned_cols=178 Identities=20% Similarity=0.219 Sum_probs=134.8
Q ss_pred ceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHH---------HHhh-HHHHHHH
Q 018946 84 DLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLV---------LFFN-RKNALDE 153 (348)
Q Consensus 84 ~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~---------~~~~-~~~~~~~ 153 (348)
+++||||+||||+|+... +..+|+.+++++|.+ .++.+.+....+........... .... ....|.+
T Consensus 12 ~k~viFD~DGTL~Ds~~~-~~~a~~~~~~~~g~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (229)
T PRK13226 12 PRAVLFDLDGTLLDSAPD-MLATVNAMLAARGRA--PITLAQLRPVVSKGARAMLAVAFPELDAAARDALIPEFLQRYEA 88 (229)
T ss_pred CCEEEEcCcCccccCHHH-HHHHHHHHHHHCCCC--CCCHHHHHHHhhhHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 479999999999999987 899999999999987 36666655554432111000000 0000 0122222
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccC
Q 018946 154 FLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISS 233 (348)
Q Consensus 154 ~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~ 233 (348)
.+. ...+++||+.++|+.|+++|++++|+||+ ....+..+++++|+..+|+.++ +++++.
T Consensus 89 ~~~-~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~---~~~~~~~~l~~~~l~~~f~~i~-~~~~~~--------------- 148 (229)
T PRK13226 89 LIG-TQSQLFDGVEGMLQRLECAGCVWGIVTNK---PEYLARLILPQLGWEQRCAVLI-GGDTLA--------------- 148 (229)
T ss_pred hhh-hcCeeCCCHHHHHHHHHHCCCeEEEECCC---CHHHHHHHHHHcCchhcccEEE-ecCcCC---------------
Confidence 222 23678999999999999999999999995 5677888999999999887543 332221
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 018946 234 GVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRI 313 (348)
Q Consensus 234 ~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~a 313 (348)
..||+|++ |..+++++|++|++|+||||+.+|+.+|+++
T Consensus 149 ---------------------------~~KP~p~~--------------~~~~~~~l~~~p~~~l~IGDs~~Di~aA~~a 187 (229)
T PRK13226 149 ---------------------------ERKPHPLP--------------LLVAAERIGVAPTDCVYVGDDERDILAARAA 187 (229)
T ss_pred ---------------------------CCCCCHHH--------------HHHHHHHhCCChhhEEEeCCCHHHHHHHHHC
Confidence 12999999 9999999999999999999999999999999
Q ss_pred CCcEEEECCCCC
Q 018946 314 GMPCVVMRSRCI 325 (348)
Q Consensus 314 G~~~i~v~~~~~ 325 (348)
|+.+|++.++..
T Consensus 188 G~~~i~v~~g~~ 199 (229)
T PRK13226 188 GMPSVAALWGYR 199 (229)
T ss_pred CCcEEEEeecCC
Confidence 999999988775
No 5
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.94 E-value=5.1e-26 Score=214.67 Aligned_cols=180 Identities=22% Similarity=0.255 Sum_probs=134.2
Q ss_pred CCCCceEEEEecCCcccccc-ccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHH----------HHhhHH
Q 018946 80 NPPRDLAVLLEVDGVLVDAY-RFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLV----------LFFNRK 148 (348)
Q Consensus 80 ~~~~~kaviFDvDGTL~d~~-~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~----------~~~~~~ 148 (348)
.....++|||||||||+|+. .+ +..+|+++++++|++. ...+.+..+.+.+......... ......
T Consensus 20 ~~~~~k~vIFDlDGTLvDS~~~~-~~~a~~~~~~~~G~~~--~~~e~~~~~~G~~~~~~~~~l~~~~~~~~~~~~l~~~~ 96 (260)
T PLN03243 20 LGCGWLGVVLEWEGVIVEDDSEL-ERKAWRALAEEEGKRP--PPAFLLKRAEGMKNEQAISEVLCWSRDFLQMKRLAIRK 96 (260)
T ss_pred hcCCceEEEEeCCCceeCCchHH-HHHHHHHHHHHcCCCC--CHHHHHHHhcCCCHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 34668899999999999996 44 7789999999999972 2233334444433221111110 000001
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhccccccc
Q 018946 149 NALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLG 228 (348)
Q Consensus 149 ~~~~~~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g 228 (348)
..+..........++||+.++|+.|+++|++++|+||+ ....++.+++++|+..+|+.++.+. ++.
T Consensus 97 ~~~~~~~~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~---~~~~~~~~l~~~gl~~~Fd~ii~~~-d~~---------- 162 (260)
T PLN03243 97 EDLYEYMQGGLYRLRPGSREFVQALKKHEIPIAVASTR---PRRYLERAIEAVGMEGFFSVVLAAE-DVY---------- 162 (260)
T ss_pred HHHHHHHHccCcccCCCHHHHHHHHHHCCCEEEEEeCc---CHHHHHHHHHHcCCHhhCcEEEecc-cCC----------
Confidence 11112222335678999999999999999999999995 5688999999999999998765433 221
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHH
Q 018946 229 KGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVA 308 (348)
Q Consensus 229 ~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~ 308 (348)
..||+|++ |..+++++|++|++|+||||+..|+.
T Consensus 163 --------------------------------~~KP~Pe~--------------~~~a~~~l~~~p~~~l~IgDs~~Di~ 196 (260)
T PLN03243 163 --------------------------------RGKPDPEM--------------FMYAAERLGFIPERCIVFGNSNSSVE 196 (260)
T ss_pred --------------------------------CCCCCHHH--------------HHHHHHHhCCChHHeEEEcCCHHHHH
Confidence 12999999 99999999999999999999999999
Q ss_pred HHHHcCCcEEEECC
Q 018946 309 GAQRIGMPCVVMRS 322 (348)
Q Consensus 309 aA~~aG~~~i~v~~ 322 (348)
+|+++||.+|++.+
T Consensus 197 aA~~aG~~~i~v~g 210 (260)
T PLN03243 197 AAHDGCMKCVAVAG 210 (260)
T ss_pred HHHHcCCEEEEEec
Confidence 99999999999973
No 6
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.94 E-value=2.6e-26 Score=209.51 Aligned_cols=184 Identities=18% Similarity=0.193 Sum_probs=135.6
Q ss_pred ceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHH-HHhcccCcHHHHHHH-----------Hhh-HHHH
Q 018946 84 DLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTD-LLRKSAGDEDRMLVL-----------FFN-RKNA 150 (348)
Q Consensus 84 ~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~-l~~~~~~~~~~~~~~-----------~~~-~~~~ 150 (348)
+++||||+||||+|+... +..+|+++++++|++ .+...+.. ..+.......+.... ... ....
T Consensus 1 ~k~iiFD~DGTL~ds~~~-~~~~~~~~~~~~g~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGL-VYRALRQAVTAAGLS---PTPEEVQSAWMGQSKIEAIRALLALDGADEAEAQAAFADFEER 76 (220)
T ss_pred CcEEEEecCCCeeccCch-HHHHHHHHHHHcCCC---CCHHHHHHhhcCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 468999999999999987 899999999999987 33332222 333221111110000 000 0112
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCc--ccchheeecchhhhhhhccccccc
Q 018946 151 LDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE--RISKIKIVGNEEVERSLYGQFVLG 228 (348)
Q Consensus 151 ~~~~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~--~~f~~~i~~~~e~~~~~~~~~v~g 228 (348)
+.+.+.....+++||+.++|+.|+++|++++|+||+ ....++.+++++|+. .+|+.++.+.+ ..
T Consensus 77 ~~~~~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~---~~~~~~~~l~~~~l~~~~~f~~i~~~~~-~~---------- 142 (220)
T TIGR03351 77 LAEAYDDGPPVALPGAEEAFRSLRSSGIKVALTTGF---DRDTAERLLEKLGWTVGDDVDAVVCPSD-VA---------- 142 (220)
T ss_pred HHHHhcccCCccCCCHHHHHHHHHHCCCEEEEEeCC---chHHHHHHHHHhhhhhhccCCEEEcCCc-CC----------
Confidence 222222334679999999999999999999999995 678899999999998 89987644332 11
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCC-CCcEEEEecCHhhH
Q 018946 229 KGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKP-VRNCFLIAGSQSGV 307 (348)
Q Consensus 229 ~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~-p~~~i~VGDs~~Di 307 (348)
..||+|++ |+.+++++|+. |++|+||||+..|+
T Consensus 143 --------------------------------~~KP~p~~--------------~~~a~~~~~~~~~~~~~~igD~~~Di 176 (220)
T TIGR03351 143 --------------------------------AGRPAPDL--------------ILRAMELTGVQDVQSVAVAGDTPNDL 176 (220)
T ss_pred --------------------------------CCCCCHHH--------------HHHHHHHcCCCChhHeEEeCCCHHHH
Confidence 12999999 99999999997 79999999999999
Q ss_pred HHHHHcCCcE-EEECCCCCCccccc
Q 018946 308 AGAQRIGMPC-VVMRSRCITTLPVS 331 (348)
Q Consensus 308 ~aA~~aG~~~-i~v~~~~~~~~~l~ 331 (348)
.+|+++||.+ |++.++......+.
T Consensus 177 ~aa~~aG~~~~i~~~~g~~~~~~~~ 201 (220)
T TIGR03351 177 EAGINAGAGAVVGVLTGAHDAEELS 201 (220)
T ss_pred HHHHHCCCCeEEEEecCCCcHHHHh
Confidence 9999999999 89988776655443
No 7
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.94 E-value=6.1e-26 Score=206.61 Aligned_cols=186 Identities=11% Similarity=0.081 Sum_probs=138.5
Q ss_pred CCceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHH-HHh-hHHHHHHHHHh---
Q 018946 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLV-LFF-NRKNALDEFLA--- 156 (348)
Q Consensus 82 ~~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~~~--- 156 (348)
|.+++||||+||||+|+... +..+|++++++++.. ..+.+.+....+.+......... ... .....+.++..
T Consensus 1 m~~~~viFD~DGTL~ds~~~-~~~a~~~~~~~~~~~--~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (214)
T PRK13288 1 MKINTVLFDLDGTLINTNEL-IISSFLHTLKTYYPN--QYKREDVLPFIGPSLHDTFSKIDESKVEEMITTYREFNHEHH 77 (214)
T ss_pred CCccEEEEeCCCcCccCHHH-HHHHHHHHHHHhCCC--CCCHHHHHHHhCcCHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Confidence 45789999999999999987 889999999998865 24555555555543111110000 000 00112222221
Q ss_pred cCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCch
Q 018946 157 SKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVD 236 (348)
Q Consensus 157 ~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~ 236 (348)
.....++||+.++|+.|+++|++++|+||+ ....++.+++.+|+.++|+.++. .+++.
T Consensus 78 ~~~~~~~~g~~~~l~~L~~~g~~~~i~S~~---~~~~~~~~l~~~gl~~~f~~i~~-~~~~~------------------ 135 (214)
T PRK13288 78 DELVTEYETVYETLKTLKKQGYKLGIVTTK---MRDTVEMGLKLTGLDEFFDVVIT-LDDVE------------------ 135 (214)
T ss_pred hhhcccCcCHHHHHHHHHHCCCeEEEEeCC---CHHHHHHHHHHcCChhceeEEEe-cCcCC------------------
Confidence 234678999999999999999999999995 57889999999999999987643 22221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCc
Q 018946 237 EQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMP 316 (348)
Q Consensus 237 ~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~ 316 (348)
..||+|++ |+.++++++++|++|++|||+.+|+.+|+++|++
T Consensus 136 ------------------------~~Kp~p~~--------------~~~~~~~~~~~~~~~~~iGDs~~Di~aa~~aG~~ 177 (214)
T PRK13288 136 ------------------------HAKPDPEP--------------VLKALELLGAKPEEALMVGDNHHDILAGKNAGTK 177 (214)
T ss_pred ------------------------CCCCCcHH--------------HHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCe
Confidence 12999999 9999999999999999999999999999999999
Q ss_pred EEEECCCCCCcccc
Q 018946 317 CVVMRSRCITTLPV 330 (348)
Q Consensus 317 ~i~v~~~~~~~~~l 330 (348)
+|++.++.....++
T Consensus 178 ~i~v~~g~~~~~~l 191 (214)
T PRK13288 178 TAGVAWTIKGREYL 191 (214)
T ss_pred EEEEcCCCCCHHHH
Confidence 99999876544433
No 8
>PRK11587 putative phosphatase; Provisional
Probab=99.93 E-value=9.9e-26 Score=206.27 Aligned_cols=176 Identities=19% Similarity=0.236 Sum_probs=125.8
Q ss_pred CCceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHH---------HHHhhHHHHHH
Q 018946 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRML---------VLFFNRKNALD 152 (348)
Q Consensus 82 ~~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~ 152 (348)
|.+++||||+||||+|+... +..+|+++++++|++. .+....+.+.......+.. ...+.....+.
T Consensus 1 M~~k~viFDlDGTL~Ds~~~-~~~a~~~~~~~~g~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (218)
T PRK11587 1 MRCKGFLFDLDGTLVDSLPA-VERAWSNWADRHGIAP----DEVLNFIHGKQAITSLRHFMAGASEAEIQAEFTRLEQIE 75 (218)
T ss_pred CCCCEEEEcCCCCcCcCHHH-HHHHHHHHHHHcCCCH----HHHHHHHcCCCHHHHHHHHhccCCcHHHHHHHHHHHHHH
Confidence 46789999999999999887 8999999999999862 2222222222111000000 00000000111
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhccccccccccc
Q 018946 153 EFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGIS 232 (348)
Q Consensus 153 ~~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~ 232 (348)
... .....++||+.++|+.|+++|++++|+||+ ........++.+|+. +|+.+ ++.+++.
T Consensus 76 ~~~-~~~~~~~pg~~e~L~~L~~~g~~~~ivTn~---~~~~~~~~l~~~~l~-~~~~i-~~~~~~~-------------- 135 (218)
T PRK11587 76 ATD-TEGITALPGAIALLNHLNKLGIPWAIVTSG---SVPVASARHKAAGLP-APEVF-VTAERVK-------------- 135 (218)
T ss_pred Hhh-hcCceeCcCHHHHHHHHHHcCCcEEEEcCC---CchHHHHHHHhcCCC-CccEE-EEHHHhc--------------
Confidence 111 235678999999999999999999999996 345667778888884 45433 3333321
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHH
Q 018946 233 SGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQR 312 (348)
Q Consensus 233 ~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~ 312 (348)
..||+|++ |..+++++|+.|++|+||||+..|+++|++
T Consensus 136 ----------------------------~~KP~p~~--------------~~~~~~~~g~~p~~~l~igDs~~di~aA~~ 173 (218)
T PRK11587 136 ----------------------------RGKPEPDA--------------YLLGAQLLGLAPQECVVVEDAPAGVLSGLA 173 (218)
T ss_pred ----------------------------CCCCCcHH--------------HHHHHHHcCCCcccEEEEecchhhhHHHHH
Confidence 13999999 999999999999999999999999999999
Q ss_pred cCCcEEEECCCC
Q 018946 313 IGMPCVVMRSRC 324 (348)
Q Consensus 313 aG~~~i~v~~~~ 324 (348)
+||++|++.++.
T Consensus 174 aG~~~i~v~~~~ 185 (218)
T PRK11587 174 AGCHVIAVNAPA 185 (218)
T ss_pred CCCEEEEECCCC
Confidence 999999998764
No 9
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.93 E-value=2.1e-25 Score=204.98 Aligned_cols=199 Identities=20% Similarity=0.206 Sum_probs=145.3
Q ss_pred CCceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHH----------HHHhhHHHHH
Q 018946 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRML----------VLFFNRKNAL 151 (348)
Q Consensus 82 ~~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~----------~~~~~~~~~~ 151 (348)
+.+++|+||+||||+|+... +..+++.+++++|++. .+.......++.......... ...-.....+
T Consensus 2 ~~~~~iiFDlDGTL~Ds~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (220)
T COG0546 2 MMIKAILFDLDGTLVDSAED-ILRAFNAALAELGLPP--LDEEEIRQLIGLGLDELIERLLGEADEEAAAELVERLREEF 78 (220)
T ss_pred CCCCEEEEeCCCccccChHH-HHHHHHHHHHHcCCCC--CCHHHHHHHhcCCHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 46789999999999999987 8899999999999983 455555554443211111000 0000001223
Q ss_pred HHHHhcC-CCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhccccccccc
Q 018946 152 DEFLASK-DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKG 230 (348)
Q Consensus 152 ~~~~~~~-~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~ 230 (348)
.+..... ...++||+.++|+.|+++|++++|+||. ....++.+++.+|+..+|+.++. .+...
T Consensus 79 ~~~~~~~~~~~~~~gv~e~L~~L~~~g~~l~i~T~k---~~~~~~~~l~~~gl~~~F~~i~g-~~~~~------------ 142 (220)
T COG0546 79 LTAYAELLESRLFPGVKELLAALKSAGYKLGIVTNK---PERELDILLKALGLADYFDVIVG-GDDVP------------ 142 (220)
T ss_pred HHHHHhhccCccCCCHHHHHHHHHhCCCeEEEEeCC---cHHHHHHHHHHhCCccccceEEc-CCCCC------------
Confidence 3332222 2478999999999999999999999994 68999999999999999998753 22111
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHH
Q 018946 231 ISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGA 310 (348)
Q Consensus 231 v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA 310 (348)
..||+|.. +..+++.+|++|++++||||+..||.+|
T Consensus 143 ------------------------------~~KP~P~~--------------l~~~~~~~~~~~~~~l~VGDs~~Di~aA 178 (220)
T COG0546 143 ------------------------------PPKPDPEP--------------LLLLLEKLGLDPEEALMVGDSLNDILAA 178 (220)
T ss_pred ------------------------------CCCcCHHH--------------HHHHHHHhCCChhheEEECCCHHHHHHH
Confidence 12999999 9999999999989999999999999999
Q ss_pred HHcCCcEEEECCCCCCccccc--ccccchhHHHHh
Q 018946 311 QRIGMPCVVMRSRCITTLPVS--KTQRLADMLCRI 343 (348)
Q Consensus 311 ~~aG~~~i~v~~~~~~~~~l~--~~~~~~d~l~~~ 343 (348)
++||+++|+|.+++...+.+. .++.+++++-+.
T Consensus 179 ~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~~~~el 213 (220)
T COG0546 179 KAAGVPAVGVTWGYNSREELAQAGADVVIDSLAEL 213 (220)
T ss_pred HHcCCCEEEEECCCCCCcchhhcCCCEEECCHHHH
Confidence 999999999999986433333 333344444443
No 10
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.93 E-value=4.8e-25 Score=207.96 Aligned_cols=181 Identities=20% Similarity=0.149 Sum_probs=129.7
Q ss_pred CCceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcH------------------------
Q 018946 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDE------------------------ 137 (348)
Q Consensus 82 ~~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~------------------------ 137 (348)
+++++||||+||||+|+....+..+|+++++++|++ ++.+.+...++......
T Consensus 2 ~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~---~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 78 (267)
T PRK13478 2 MKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVE---ITLEEARGPMGLGKWDHIRALLKMPRVAARWQAVFGRLPTE 78 (267)
T ss_pred CceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCC---CCHHHHHHhcCCCHHHHHHHHHhcHHHHHHHHHHhCCCCCH
Confidence 357899999999999986432468999999999986 44443333333211000
Q ss_pred HHHHHHHhhHHHHHHHHHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhh
Q 018946 138 DRMLVLFFNRKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEV 217 (348)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~ 217 (348)
.......-.....+.+.+. ....++||+.++|+.|+++|++++|+||+ ....+..+++.+++..+|...+++.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~-~~~~~~pg~~elL~~L~~~g~~l~I~T~~---~~~~~~~~l~~~~l~~~~~d~i~~~~~~ 154 (267)
T PRK13478 79 ADVDALYAAFEPLQIAKLA-DYATPIPGVLEVIAALRARGIKIGSTTGY---TREMMDVVVPLAAAQGYRPDHVVTTDDV 154 (267)
T ss_pred HHHHHHHHHHHHHHHHHHh-hcCCCCCCHHHHHHHHHHCCCEEEEEcCC---cHHHHHHHHHHHhhcCCCceEEEcCCcC
Confidence 0000000000111222222 24678999999999999999999999995 5678889999999887752233444333
Q ss_pred hhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCC-CCc
Q 018946 218 ERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKP-VRN 296 (348)
Q Consensus 218 ~~~~~~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~-p~~ 296 (348)
.. .||+|++ |..+++++|+. |++
T Consensus 155 ~~------------------------------------------~KP~p~~--------------~~~a~~~l~~~~~~e 178 (267)
T PRK13478 155 PA------------------------------------------GRPYPWM--------------ALKNAIELGVYDVAA 178 (267)
T ss_pred CC------------------------------------------CCCChHH--------------HHHHHHHcCCCCCcc
Confidence 21 2999999 99999999996 699
Q ss_pred EEEEecCHhhHHHHHHcCCcEEEECCCCC
Q 018946 297 CFLIAGSQSGVAGAQRIGMPCVVMRSRCI 325 (348)
Q Consensus 297 ~i~VGDs~~Di~aA~~aG~~~i~v~~~~~ 325 (348)
|+||||+.+|+.+|+++||.+|+|.+++.
T Consensus 179 ~l~IGDs~~Di~aA~~aG~~~i~v~~g~~ 207 (267)
T PRK13478 179 CVKVDDTVPGIEEGLNAGMWTVGVILSGN 207 (267)
T ss_pred eEEEcCcHHHHHHHHHCCCEEEEEccCcc
Confidence 99999999999999999999999998875
No 11
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.93 E-value=2.4e-25 Score=201.50 Aligned_cols=181 Identities=22% Similarity=0.264 Sum_probs=134.2
Q ss_pred EEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHH---------h-hHHHHHHHHHh
Q 018946 87 VLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLF---------F-NRKNALDEFLA 156 (348)
Q Consensus 87 viFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~ 156 (348)
||||+||||+|+... +..+|+++++++|++ .++.+.+...++............. . ...+.+.+++.
T Consensus 1 viFD~DGTL~Ds~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (213)
T TIGR01449 1 VLFDLDGTLVDSAPD-IAAAVNMALAALGLP--PATLARVIGFIGNGVPVLMERVLAWAGQEPDAQRVAELRKLFDRHYE 77 (213)
T ss_pred CeecCCCccccCHHH-HHHHHHHHHHHCCCC--CCCHHHHHHHhcccHHHHHHHHhhccccccChHHHHHHHHHHHHHHH
Confidence 699999999999886 789999999999986 3565555544443211000000000 0 00112222222
Q ss_pred ---cCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccC
Q 018946 157 ---SKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISS 233 (348)
Q Consensus 157 ---~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~ 233 (348)
.....++||+.++|+.|+++|++++|+||+ ....++.+++++|+.++|+.++ +.+++.
T Consensus 78 ~~~~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~---~~~~~~~~l~~~~l~~~f~~~~-~~~~~~--------------- 138 (213)
T TIGR01449 78 EVAGELTSVFPGVEATLGALRAKGLRLGLVTNK---PTPLARPLLELLGLAKYFSVLI-GGDSLA--------------- 138 (213)
T ss_pred HhccccCccCCCHHHHHHHHHHCCCeEEEEeCC---CHHHHHHHHHHcCcHhhCcEEE-ecCCCC---------------
Confidence 124678999999999999999999999995 5688999999999999998653 333221
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 018946 234 GVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRI 313 (348)
Q Consensus 234 ~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~a 313 (348)
..||+|++ |+.+++++|++|++|++|||+.+|+.+|+++
T Consensus 139 ---------------------------~~Kp~p~~--------------~~~~~~~~~~~~~~~~~igDs~~d~~aa~~a 177 (213)
T TIGR01449 139 ---------------------------QRKPHPDP--------------LLLAAERLGVAPQQMVYVGDSRVDIQAARAA 177 (213)
T ss_pred ---------------------------CCCCChHH--------------HHHHHHHcCCChhHeEEeCCCHHHHHHHHHC
Confidence 12999999 9999999999999999999999999999999
Q ss_pred CCcEEEECCCCCCcccc
Q 018946 314 GMPCVVMRSRCITTLPV 330 (348)
Q Consensus 314 G~~~i~v~~~~~~~~~l 330 (348)
||++|++.++......+
T Consensus 178 G~~~i~v~~g~~~~~~l 194 (213)
T TIGR01449 178 GCPSVLLTYGYRYGEAI 194 (213)
T ss_pred CCeEEEEccCCCCCcch
Confidence 99999998877654443
No 12
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.93 E-value=2.3e-25 Score=204.08 Aligned_cols=182 Identities=16% Similarity=0.181 Sum_probs=134.4
Q ss_pred CCceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHH-----------HhhH-HH
Q 018946 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVL-----------FFNR-KN 149 (348)
Q Consensus 82 ~~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~-----------~~~~-~~ 149 (348)
..+++|+||+||||+|+... +..+|+++++++|++. .........++............ .... .+
T Consensus 5 ~~~k~iiFD~DGTL~d~~~~-~~~a~~~~~~~~g~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (222)
T PRK10826 5 RQILAAIFDMDGLLIDSEPL-WDRAELDVMASLGVDI--SRREELPDTLGLRIDQVVDLWYARQPWNGPSRQEVVQRIIA 81 (222)
T ss_pred ccCcEEEEcCCCCCCcCHHH-HHHHHHHHHHHCCCCC--CHHHHHHHhhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 35789999999999999887 8899999999999862 22233333332211000000000 0000 11
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccc
Q 018946 150 ALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGK 229 (348)
Q Consensus 150 ~~~~~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~ 229 (348)
.+.+.+. ....++||+.++|+.|+++|++++|+||+ ....++.+++++|+.++|+.++.+ +++.
T Consensus 82 ~~~~~~~-~~~~~~~g~~~~l~~l~~~g~~~~i~S~~---~~~~~~~~l~~~~l~~~f~~~~~~-~~~~----------- 145 (222)
T PRK10826 82 RVISLIE-ETRPLLPGVREALALCKAQGLKIGLASAS---PLHMLEAVLTMFDLRDYFDALASA-EKLP----------- 145 (222)
T ss_pred HHHHHHh-cCCCCCCCHHHHHHHHHHCCCeEEEEeCC---cHHHHHHHHHhCcchhcccEEEEc-ccCC-----------
Confidence 2222222 24679999999999999999999999995 568889999999999999876533 2221
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHH
Q 018946 230 GISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAG 309 (348)
Q Consensus 230 ~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~a 309 (348)
.+||+|++ |+.+++++|++|++|++|||+.+|+.+
T Consensus 146 -------------------------------~~Kp~~~~--------------~~~~~~~~~~~~~~~~~igDs~~Di~a 180 (222)
T PRK10826 146 -------------------------------YSKPHPEV--------------YLNCAAKLGVDPLTCVALEDSFNGMIA 180 (222)
T ss_pred -------------------------------CCCCCHHH--------------HHHHHHHcCCCHHHeEEEcCChhhHHH
Confidence 13999999 999999999999999999999999999
Q ss_pred HHHcCCcEEEECCCCCCc
Q 018946 310 AQRIGMPCVVMRSRCITT 327 (348)
Q Consensus 310 A~~aG~~~i~v~~~~~~~ 327 (348)
|+++||++|++.++....
T Consensus 181 A~~aG~~~i~v~~~~~~~ 198 (222)
T PRK10826 181 AKAARMRSIVVPAPEQQN 198 (222)
T ss_pred HHHcCCEEEEecCCccCc
Confidence 999999999999876543
No 13
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.93 E-value=5.9e-25 Score=210.04 Aligned_cols=191 Identities=27% Similarity=0.448 Sum_probs=135.8
Q ss_pred CCceEEEEecCCcccccc-ccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCc-----------------------H
Q 018946 82 PRDLAVLLEVDGVLVDAY-RFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGD-----------------------E 137 (348)
Q Consensus 82 ~~~kaviFDvDGTL~d~~-~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~-----------------------~ 137 (348)
..+++|||||||||+|+. .. +..+|+++++++|++...|+.+.+..+.....+. .
T Consensus 38 ~~~k~VIFDlDGTLvDS~~~~-~~~a~~~~l~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (286)
T PLN02779 38 ALPEALLFDCDGVLVETERDG-HRVAFNDAFKEFGLRPVEWDVELYDELLNIGGGKERMTWYFNENGWPTSTIEKAPKDE 116 (286)
T ss_pred cCCcEEEEeCceeEEccccHH-HHHHHHHHHHHcCCCCCCCCHHHHHHHHccCCChHHHHHHHHHcCCCccccccCCccc
Confidence 446899999999999999 87 8899999999999842235555443322110000 0
Q ss_pred ---HHHHHHHh-hHHHHHHHHHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchhe-ee
Q 018946 138 ---DRMLVLFF-NRKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIK-IV 212 (348)
Q Consensus 138 ---~~~~~~~~-~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~-i~ 212 (348)
+.....+. .....|.+.+....++++||+.++|+.|+++|++++|+||+ ....+..+++.++...+|+.. ++
T Consensus 117 e~~~~~~~~~~~~~~~~y~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~---~~~~~~~~l~~~~~~~~~~~~~~v 193 (286)
T PLN02779 117 EERKELVDSLHDRKTELFKELIESGALPLRPGVLRLMDEALAAGIKVAVCSTS---NEKAVSKIVNTLLGPERAQGLDVF 193 (286)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCC---CHHHHHHHHHHhccccccCceEEE
Confidence 00111111 11234444443334689999999999999999999999996 567778888877544444421 12
Q ss_pred cchhhhhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCC
Q 018946 213 GNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEK 292 (348)
Q Consensus 213 ~~~e~~~~~~~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv 292 (348)
+++++. ..||+|++ |..+++++|+
T Consensus 194 ~~~~~~------------------------------------------~~KP~p~~--------------~~~a~~~~~~ 217 (286)
T PLN02779 194 AGDDVP------------------------------------------KKKPDPDI--------------YNLAAETLGV 217 (286)
T ss_pred eccccC------------------------------------------CCCCCHHH--------------HHHHHHHhCc
Confidence 222211 13999999 9999999999
Q ss_pred CCCcEEEEecCHhhHHHHHHcCCcEEEECCCCCCcccccc
Q 018946 293 PVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRCITTLPVSK 332 (348)
Q Consensus 293 ~p~~~i~VGDs~~Di~aA~~aG~~~i~v~~~~~~~~~l~~ 332 (348)
+|++|+||||+.+|+++|+++||.+|+|.++......+..
T Consensus 218 ~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ 257 (286)
T PLN02779 218 DPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSG 257 (286)
T ss_pred ChHHEEEEeCCHHhHHHHHHcCCEEEEEccCCccccccCC
Confidence 9999999999999999999999999999988766655544
No 14
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.92 E-value=3.6e-25 Score=200.22 Aligned_cols=182 Identities=23% Similarity=0.299 Sum_probs=134.9
Q ss_pred EEEecCCccccccccChHHHHHHHHHH-cCCCCCCCCHHHHHHHHhcccCcHHHHHHHHhhH-HHHHHHHH-hcCCCCCC
Q 018946 87 VLLEVDGVLVDAYRFGNRQAFNVAFQK-LGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNR-KNALDEFL-ASKDAPLR 163 (348)
Q Consensus 87 viFDvDGTL~d~~~~~~~~a~~~~~~~-~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~ 163 (348)
||||+||||+|+... +..+|++++++ +|.+ .++.+.+....+.......+........ ...+.+.. .....+++
T Consensus 1 iiFDlDGTL~Ds~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (205)
T TIGR01454 1 VVFDLDGVLVDSFAV-MREAFAIAYREVVGDG--PAPFEEYRRHLGRYFPDIMRIMGLPLEMEEPFVRESYRLAGEVEVF 77 (205)
T ss_pred CeecCcCccccCHHH-HHHHHHHHHHHhcCCC--CCCHHHHHHHhCccHHHHHHHcCCCHHHHHHHHHHHHHhhcccccC
Confidence 699999999999987 89999999988 4775 2555555555543321111110000000 11111111 12357889
Q ss_pred CcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHHHHH
Q 018946 164 PGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATEA 243 (348)
Q Consensus 164 pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~~~~ 243 (348)
||+.++|+.|+++|++++|+||+ ....++..++.+|+.++|+.++. .++..
T Consensus 78 ~g~~~~L~~L~~~g~~~~i~Sn~---~~~~~~~~l~~~~l~~~f~~i~~-~~~~~------------------------- 128 (205)
T TIGR01454 78 PGVPELLAELRADGVGTAIATGK---SGPRARSLLEALGLLPLFDHVIG-SDEVP------------------------- 128 (205)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCC---chHHHHHHHHHcCChhheeeEEe-cCcCC-------------------------
Confidence 99999999999999999999995 56888999999999999986543 22221
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEECCC
Q 018946 244 RKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSR 323 (348)
Q Consensus 244 ~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~~~ 323 (348)
..||+|++ |+.+++++|++|++|+||||+.+|+.+|+++||++|++.++
T Consensus 129 -----------------~~KP~~~~--------------~~~~~~~~~~~~~~~l~igD~~~Di~aA~~~Gi~~i~~~~g 177 (205)
T TIGR01454 129 -----------------RPKPAPDI--------------VREALRLLDVPPEDAVMVGDAVTDLASARAAGTATVAALWG 177 (205)
T ss_pred -----------------CCCCChHH--------------HHHHHHHcCCChhheEEEcCCHHHHHHHHHcCCeEEEEEec
Confidence 12999999 99999999999999999999999999999999999999988
Q ss_pred CCCccccc
Q 018946 324 CITTLPVS 331 (348)
Q Consensus 324 ~~~~~~l~ 331 (348)
.....++.
T Consensus 178 ~~~~~~l~ 185 (205)
T TIGR01454 178 EGDAGELL 185 (205)
T ss_pred CCChhhhh
Confidence 76665543
No 15
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.92 E-value=9.4e-25 Score=193.23 Aligned_cols=170 Identities=24% Similarity=0.331 Sum_probs=125.2
Q ss_pred EEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHH-------------h-hHHHHH
Q 018946 86 AVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLF-------------F-NRKNAL 151 (348)
Q Consensus 86 aviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------------~-~~~~~~ 151 (348)
+||||+||||+|+... +..+|+++++++|++ ++........+.......+..... . .....+
T Consensus 1 ~iiFD~DGTL~ds~~~-~~~~~~~~~~~~g~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (185)
T TIGR01990 1 AVIFDLDGVITDTAEY-HYLAWKALADELGIP---FDEEFNESLKGVSREDSLERILDLGGKKYSEEEKEELAERKNDYY 76 (185)
T ss_pred CeEEcCCCccccChHH-HHHHHHHHHHHcCCC---CCHHHHHHhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 5899999999999987 889999999999987 454444333332211111100000 0 001223
Q ss_pred HHHHhc-CCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhccccccccc
Q 018946 152 DEFLAS-KDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKG 230 (348)
Q Consensus 152 ~~~~~~-~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~ 230 (348)
.+.+.. ....++||+.++|+.|+++|++++|+||+ ......++++|+..+|+.++.+. ++.
T Consensus 77 ~~~~~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~-----~~~~~~l~~~~l~~~f~~~~~~~-~~~------------ 138 (185)
T TIGR01990 77 VELLKELTPADVLPGIKNLLDDLKKNNIKIALASAS-----KNAPTVLEKLGLIDYFDAIVDPA-EIK------------ 138 (185)
T ss_pred HHHHHhcCCcccCccHHHHHHHHHHCCCeEEEEeCC-----ccHHHHHHhcCcHhhCcEEEehh-hcC------------
Confidence 333321 23468999999999999999999999995 23467899999999998764332 221
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHH
Q 018946 231 ISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGA 310 (348)
Q Consensus 231 v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA 310 (348)
..||+|++ |+.++++++++|++|+||||+.+|+.+|
T Consensus 139 ------------------------------~~kp~p~~--------------~~~~~~~~~~~~~~~v~vgD~~~di~aA 174 (185)
T TIGR01990 139 ------------------------------KGKPDPEI--------------FLAAAEGLGVSPSECIGIEDAQAGIEAI 174 (185)
T ss_pred ------------------------------CCCCChHH--------------HHHHHHHcCCCHHHeEEEecCHHHHHHH
Confidence 12999999 9999999999999999999999999999
Q ss_pred HHcCCcEEEEC
Q 018946 311 QRIGMPCVVMR 321 (348)
Q Consensus 311 ~~aG~~~i~v~ 321 (348)
+++||++|+|.
T Consensus 175 ~~aG~~~i~v~ 185 (185)
T TIGR01990 175 KAAGMFAVGVG 185 (185)
T ss_pred HHcCCEEEecC
Confidence 99999999873
No 16
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.92 E-value=1.8e-24 Score=213.03 Aligned_cols=181 Identities=18% Similarity=0.200 Sum_probs=135.0
Q ss_pred CCceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHH-HhhH------HHHHHHH
Q 018946 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVL-FFNR------KNALDEF 154 (348)
Q Consensus 82 ~~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~------~~~~~~~ 154 (348)
...++|||||||||+|+....+..+|+++++++|++. ...+.+....+............ .... .+.+.++
T Consensus 129 ~~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~--~~~e~~~~~~G~~~~~~l~~ll~~~~~~~~~e~l~~~~~~~ 206 (381)
T PLN02575 129 CGWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSP--PPAFILRRVEGMKNEQAISEVLCWSRDPAELRRMATRKEEI 206 (381)
T ss_pred CCCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCC--CHHHHHHHhcCCCHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 4678999999999999876326789999999999873 33434445544332211111100 0000 1122222
Q ss_pred Hh---cCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccc
Q 018946 155 LA---SKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGI 231 (348)
Q Consensus 155 ~~---~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v 231 (348)
+. .....++||+.++|+.|+++|++++|+||+ ....++.+++++|+..||+.++.+. ++..
T Consensus 207 y~~~~~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~---~~~~~~~~L~~lgL~~yFd~Iv~sd-dv~~------------ 270 (381)
T PLN02575 207 YQALQGGIYRLRTGSQEFVNVLMNYKIPMALVSTR---PRKTLENAIGSIGIRGFFSVIVAAE-DVYR------------ 270 (381)
T ss_pred HHHHhccCCCcCcCHHHHHHHHHHCCCeEEEEeCC---CHHHHHHHHHHcCCHHHceEEEecC-cCCC------------
Confidence 21 234678999999999999999999999995 5789999999999999999764333 2211
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHH
Q 018946 232 SSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQ 311 (348)
Q Consensus 232 ~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~ 311 (348)
.||+|++ |..+++++|+.|++|+||||+..||++|+
T Consensus 271 ------------------------------~KP~Pei--------------fl~A~~~lgl~Peecl~IGDS~~DIeAAk 306 (381)
T PLN02575 271 ------------------------------GKPDPEM--------------FIYAAQLLNFIPERCIVFGNSNQTVEAAH 306 (381)
T ss_pred ------------------------------CCCCHHH--------------HHHHHHHcCCCcccEEEEcCCHHHHHHHH
Confidence 2999999 99999999999999999999999999999
Q ss_pred HcCCcEEEECCCC
Q 018946 312 RIGMPCVVMRSRC 324 (348)
Q Consensus 312 ~aG~~~i~v~~~~ 324 (348)
++||.+|+|.++.
T Consensus 307 ~AGm~~IgV~~~~ 319 (381)
T PLN02575 307 DARMKCVAVASKH 319 (381)
T ss_pred HcCCEEEEECCCC
Confidence 9999999998654
No 17
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.92 E-value=1.5e-24 Score=191.92 Aligned_cols=171 Identities=24% Similarity=0.329 Sum_probs=126.9
Q ss_pred ceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHH--------------hhHHH
Q 018946 84 DLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLF--------------FNRKN 149 (348)
Q Consensus 84 ~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------------~~~~~ 149 (348)
+++|+||+||||+|+... +..+|+++++++|++ ++........+............. .....
T Consensus 1 ~~~iiFD~DGTL~ds~~~-~~~~~~~~~~~~g~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPL-HAQAWKHLADKYGIE---FDKQYNTSLGGLSREDILRAILKLRKPGLSLETIHQLAERKNE 76 (185)
T ss_pred CCeEEEcCCCcccCChHH-HHHHHHHHHHHcCCC---CCHHHHHHcCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 368999999999999987 889999999999986 443333222222111110000000 00012
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccc
Q 018946 150 ALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGK 229 (348)
Q Consensus 150 ~~~~~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~ 229 (348)
.+.+.+......++||+.++|+.|+++|++++++||+ ..++.+++.+|+.++|+.++. .+++.
T Consensus 77 ~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~-----~~~~~~l~~~~l~~~f~~v~~-~~~~~----------- 139 (185)
T TIGR02009 77 LYRELLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS-----KNADRILAKLGLTDYFDAIVD-ADEVK----------- 139 (185)
T ss_pred HHHHHHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc-----hhHHHHHHHcChHHHCCEeee-hhhCC-----------
Confidence 3333333344789999999999999999999999993 567889999999999986643 22221
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHH
Q 018946 230 GISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAG 309 (348)
Q Consensus 230 ~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~a 309 (348)
..||+|++ |+.+++++|++|++|++|||+.+|+++
T Consensus 140 -------------------------------~~kp~~~~--------------~~~~~~~~~~~~~~~v~IgD~~~di~a 174 (185)
T TIGR02009 140 -------------------------------EGKPHPET--------------FLLAAELLGVSPNECVVFEDALAGVQA 174 (185)
T ss_pred -------------------------------CCCCChHH--------------HHHHHHHcCCCHHHeEEEeCcHhhHHH
Confidence 13999999 999999999999999999999999999
Q ss_pred HHHcCCcEEEE
Q 018946 310 AQRIGMPCVVM 320 (348)
Q Consensus 310 A~~aG~~~i~v 320 (348)
|+++|+++|+|
T Consensus 175 A~~~G~~~i~v 185 (185)
T TIGR02009 175 ARAAGMFAVAV 185 (185)
T ss_pred HHHCCCeEeeC
Confidence 99999999875
No 18
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.92 E-value=2.3e-24 Score=196.94 Aligned_cols=176 Identities=16% Similarity=0.230 Sum_probs=129.2
Q ss_pred CceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHHhh----H---HHHHHHHH
Q 018946 83 RDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFN----R---KNALDEFL 155 (348)
Q Consensus 83 ~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~---~~~~~~~~ 155 (348)
++++|+||+||||+|+... +..+|+++++++|++. ..++.+....+.............++ . ...+.+.+
T Consensus 3 ~~~~viFD~DGTL~d~~~~-~~~a~~~~~~~~g~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (221)
T PRK10563 3 QIEAVFFDCDGTLVDSEVI-CSRAYVTMFAEFGITL--SLEEVFKRFKGVKLYEIIDIISKEHGVTLAKAELEPVYRAEV 79 (221)
T ss_pred CCCEEEECCCCCCCCChHH-HHHHHHHHHHHcCCCC--CHHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 5789999999999999886 7899999999999862 22333443333221111111111111 0 11222211
Q ss_pred h---cCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhccccccccccc
Q 018946 156 A---SKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGIS 232 (348)
Q Consensus 156 ~---~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~ 232 (348)
. .....++||+.++|+.| +++++|+||+ ....+...++++|+..+|+..+++++++..
T Consensus 80 ~~~~~~~~~~~~gv~~~L~~L---~~~~~ivTn~---~~~~~~~~l~~~~l~~~F~~~v~~~~~~~~------------- 140 (221)
T PRK10563 80 ARLFDSELEPIAGANALLESI---TVPMCVVSNG---PVSKMQHSLGKTGMLHYFPDKLFSGYDIQR------------- 140 (221)
T ss_pred HHHHHccCCcCCCHHHHHHHc---CCCEEEEeCC---cHHHHHHHHHhcChHHhCcceEeeHHhcCC-------------
Confidence 1 23467899999999999 4999999996 457889999999999999755555543322
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHH
Q 018946 233 SGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQR 312 (348)
Q Consensus 233 ~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~ 312 (348)
.||+|++ |+.+++++|++|++|+||||+..||.+|++
T Consensus 141 -----------------------------~KP~p~~--------------~~~a~~~~~~~p~~~l~igDs~~di~aA~~ 177 (221)
T PRK10563 141 -----------------------------WKPDPAL--------------MFHAAEAMNVNVENCILVDDSSAGAQSGIA 177 (221)
T ss_pred -----------------------------CCCChHH--------------HHHHHHHcCCCHHHeEEEeCcHhhHHHHHH
Confidence 3999999 999999999999999999999999999999
Q ss_pred cCCcEEEECCC
Q 018946 313 IGMPCVVMRSR 323 (348)
Q Consensus 313 aG~~~i~v~~~ 323 (348)
+||++|++.++
T Consensus 178 aG~~~i~~~~~ 188 (221)
T PRK10563 178 AGMEVFYFCAD 188 (221)
T ss_pred CCCEEEEECCC
Confidence 99999998754
No 19
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.92 E-value=7.1e-24 Score=193.16 Aligned_cols=178 Identities=18% Similarity=0.193 Sum_probs=126.1
Q ss_pred ceEEEEecCCccccccccChHHHHHHH---HHHcCCCCCCCCHHHHHH-HHh------cccCc-HHHHHHHHhh---H--
Q 018946 84 DLAVLLEVDGVLVDAYRFGNRQAFNVA---FQKLGLDCANWTAPIYTD-LLR------KSAGD-EDRMLVLFFN---R-- 147 (348)
Q Consensus 84 ~kaviFDvDGTL~d~~~~~~~~a~~~~---~~~~gl~~~~~~~~~~~~-l~~------~~~~~-~~~~~~~~~~---~-- 147 (348)
+++|+||+||||+|+... +..+|+.+ +.++|++ ++.+.+.. ... ..... .......... .
T Consensus 2 ~~~viFDlDGTL~ds~~~-~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (221)
T TIGR02253 2 IKAIFFDLDDTLIDTSGL-AEKARRNAIEVLIEAGLN---VDFEEAYEELLKLIKEYGSNYPTHFDYLIRRLWEEYNPKL 77 (221)
T ss_pred ceEEEEeCCCCCcCCCCc-cCHHHHHHHHHHHHCCCc---CCHHHHHHHHHHHHHHhccccCcchHHHHHHHhhhcCHHH
Confidence 679999999999999876 66776654 4566776 33322221 111 11011 1111110000 0
Q ss_pred ----HHHHHHHHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcc
Q 018946 148 ----KNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYG 223 (348)
Q Consensus 148 ----~~~~~~~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~ 223 (348)
...+.+.. ...+.++||+.++|+.|+++|++++|+||+ ....++..++.+|+..+|+.++.+.+ +.
T Consensus 78 ~~~~~~~~~~~~-~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~---~~~~~~~~l~~~~l~~~f~~i~~~~~-~~----- 147 (221)
T TIGR02253 78 VAAFVYAYHKLK-FAYLRVYPGVRDTLMELRESGYRLGIITDG---LPVKQWEKLERLGVRDFFDAVITSEE-EG----- 147 (221)
T ss_pred HHHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHCCCEEEEEeCC---chHHHHHHHHhCChHHhccEEEEecc-CC-----
Confidence 11111111 123678999999999999999999999995 45778889999999999987654432 21
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecC
Q 018946 224 QFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGS 303 (348)
Q Consensus 224 ~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs 303 (348)
..||+|++ |+.+++++|++|++|+||||+
T Consensus 148 -------------------------------------~~KP~~~~--------------~~~~~~~~~~~~~~~~~igDs 176 (221)
T TIGR02253 148 -------------------------------------VEKPHPKI--------------FYAALKRLGVKPEEAVMVGDR 176 (221)
T ss_pred -------------------------------------CCCCCHHH--------------HHHHHHHcCCChhhEEEECCC
Confidence 12999999 999999999999999999999
Q ss_pred H-hhHHHHHHcCCcEEEECCCCCC
Q 018946 304 Q-SGVAGAQRIGMPCVVMRSRCIT 326 (348)
Q Consensus 304 ~-~Di~aA~~aG~~~i~v~~~~~~ 326 (348)
. +|+.+|+++||.+|++.++...
T Consensus 177 ~~~di~~A~~aG~~~i~~~~~~~~ 200 (221)
T TIGR02253 177 LDKDIKGAKNLGMKTVWINQGKSS 200 (221)
T ss_pred hHHHHHHHHHCCCEEEEECCCCCc
Confidence 8 8999999999999999987653
No 20
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.92 E-value=4.6e-24 Score=202.68 Aligned_cols=186 Identities=16% Similarity=0.158 Sum_probs=136.6
Q ss_pred CCCCCceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHH---HHhhH-HHHHHHH
Q 018946 79 QNPPRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLV---LFFNR-KNALDEF 154 (348)
Q Consensus 79 ~~~~~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~-~~~~~~~ 154 (348)
..+..+++||||+||||+|+... +..+|+++++++|++ .++.+.+..+.+.......+... ..... ...+.+.
T Consensus 57 ~~~~~~k~vIFDlDGTLiDS~~~-~~~a~~~~~~~~G~~--~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~ 133 (273)
T PRK13225 57 SYPQTLQAIIFDFDGTLVDSLPT-VVAIANAHAPDFGYD--PIDERDYAQLRQWSSRTIVRRAGLSPWQQARLLQRVQRQ 133 (273)
T ss_pred hhhhhcCEEEECCcCccccCHHH-HHHHHHHHHHHCCCC--CCCHHHHHHHhCccHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44556899999999999999887 889999999999987 36666565555432111111000 00000 1112222
Q ss_pred Hh--cCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhccccccccccc
Q 018946 155 LA--SKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGIS 232 (348)
Q Consensus 155 ~~--~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~ 232 (348)
+. ....+++||+.++|+.|+++|++++|+||+ ....+..+++.+|+.++|+.++ +.+++
T Consensus 134 ~~~~~~~~~l~pg~~e~L~~L~~~gi~laIvSn~---~~~~~~~~L~~~gl~~~F~~vi-~~~~~--------------- 194 (273)
T PRK13225 134 LGDCLPALQLFPGVADLLAQLRSRSLCLGILSSN---SRQNIEAFLQRQGLRSLFSVVQ-AGTPI--------------- 194 (273)
T ss_pred HHhhcccCCcCCCHHHHHHHHHHCCCeEEEEeCC---CHHHHHHHHHHcCChhheEEEE-ecCCC---------------
Confidence 11 134678999999999999999999999996 6799999999999999998653 22211
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHH
Q 018946 233 SGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQR 312 (348)
Q Consensus 233 ~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~ 312 (348)
+|.+++ |+.++++++++|++|+||||+.+|+.+|++
T Consensus 195 ------------------------------~~k~~~--------------~~~~l~~~~~~p~~~l~IGDs~~Di~aA~~ 230 (273)
T PRK13225 195 ------------------------------LSKRRA--------------LSQLVAREGWQPAAVMYVGDETRDVEAARQ 230 (273)
T ss_pred ------------------------------CCCHHH--------------HHHHHHHhCcChhHEEEECCCHHHHHHHHH
Confidence 122334 899999999999999999999999999999
Q ss_pred cCCcEEEECCCCCCcccc
Q 018946 313 IGMPCVVMRSRCITTLPV 330 (348)
Q Consensus 313 aG~~~i~v~~~~~~~~~l 330 (348)
+||.+|+|.++.....++
T Consensus 231 AG~~~I~v~~g~~~~~~l 248 (273)
T PRK13225 231 VGLIAVAVTWGFNDRQSL 248 (273)
T ss_pred CCCeEEEEecCCCCHHHH
Confidence 999999999887765444
No 21
>PLN02940 riboflavin kinase
Probab=99.91 E-value=3.2e-24 Score=212.79 Aligned_cols=180 Identities=18% Similarity=0.273 Sum_probs=135.3
Q ss_pred CceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHHhh----H---HHHHHHHH
Q 018946 83 RDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFN----R---KNALDEFL 155 (348)
Q Consensus 83 ~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~---~~~~~~~~ 155 (348)
.+++||||+||||+|+... +..+|+++++++|+. |+.+....+++..............+ . ...+.+.+
T Consensus 10 ~ik~VIFDlDGTLvDt~~~-~~~a~~~~~~~~G~~---~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (382)
T PLN02940 10 LVSHVILDLDGTLLNTDGI-VSDVLKAFLVKYGKQ---WDGREAQKIVGKTPLEAAATVVEDYGLPCSTDEFNSEITPLL 85 (382)
T ss_pred cCCEEEECCcCcCCcCHHH-HHHHHHHHHHHcCCC---CCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 4789999999999999987 899999999999986 66665555555432111111101000 0 01111111
Q ss_pred h--cCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHH-HcCCcccchheeecchhhhhhhccccccccccc
Q 018946 156 A--SKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVE-KLGSERISKIKIVGNEEVERSLYGQFVLGKGIS 232 (348)
Q Consensus 156 ~--~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~-~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~ 232 (348)
. .....++||+.++|+.|+++|++++|+||+ ....+...++ .+|+.++|+.++. .+++.
T Consensus 86 ~~~~~~~~l~pGv~elL~~Lk~~g~~l~IvTn~---~~~~~~~~l~~~~gl~~~Fd~ii~-~d~v~-------------- 147 (382)
T PLN02940 86 SEQWCNIKALPGANRLIKHLKSHGVPMALASNS---PRANIEAKISCHQGWKESFSVIVG-GDEVE-------------- 147 (382)
T ss_pred HHHHccCCCCcCHHHHHHHHHHCCCcEEEEeCC---cHHHHHHHHHhccChHhhCCEEEe-hhhcC--------------
Confidence 1 124678999999999999999999999996 4577777776 7899999987643 33221
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHH
Q 018946 233 SGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQR 312 (348)
Q Consensus 233 ~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~ 312 (348)
..||+|++ |+.+++++|++|++|++|||+..|+++|++
T Consensus 148 ----------------------------~~KP~p~~--------------~~~a~~~lgv~p~~~l~VGDs~~Di~aA~~ 185 (382)
T PLN02940 148 ----------------------------KGKPSPDI--------------FLEAAKRLNVEPSNCLVIEDSLPGVMAGKA 185 (382)
T ss_pred ----------------------------CCCCCHHH--------------HHHHHHHcCCChhHEEEEeCCHHHHHHHHH
Confidence 23999999 999999999999999999999999999999
Q ss_pred cCCcEEEECCCCCC
Q 018946 313 IGMPCVVMRSRCIT 326 (348)
Q Consensus 313 aG~~~i~v~~~~~~ 326 (348)
+||.+|++.++...
T Consensus 186 aGi~~I~v~~g~~~ 199 (382)
T PLN02940 186 AGMEVIAVPSIPKQ 199 (382)
T ss_pred cCCEEEEECCCCcc
Confidence 99999999986543
No 22
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.91 E-value=1.3e-23 Score=191.56 Aligned_cols=182 Identities=22% Similarity=0.247 Sum_probs=136.0
Q ss_pred CCceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHHh-------hH------H
Q 018946 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFF-------NR------K 148 (348)
Q Consensus 82 ~~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~------~ 148 (348)
+.+++|+||+||||+|+... +..+|+++++++|.+. ++...+....+... ..+....+ .. .
T Consensus 4 ~~~~~iiFD~DGTL~d~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 77 (226)
T PRK13222 4 MDIRAVAFDLDGTLVDSAPD-LAAAVNAALAALGLPP--AGEERVRTWVGNGA---DVLVERALTWAGREPDEELLEKLR 77 (226)
T ss_pred CcCcEEEEcCCcccccCHHH-HHHHHHHHHHHCCCCC--CCHHHHHHHhCccH---HHHHHHHHhhccCCccHHHHHHHH
Confidence 56789999999999999876 7889999999999873 55544444443321 11111110 00 1
Q ss_pred HHHHHHHhc---CCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccc
Q 018946 149 NALDEFLAS---KDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQF 225 (348)
Q Consensus 149 ~~~~~~~~~---~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~ 225 (348)
..+.+++.. ....++||+.++|+.|+++|++++|+||+ ....++.+++++|+..+|+.++ +.+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~---~~~~~~~~l~~~~l~~~f~~~~-~~~~~~------- 146 (226)
T PRK13222 78 ELFDRHYAENVAGGSRLYPGVKETLAALKAAGYPLAVVTNK---PTPFVAPLLEALGIADYFSVVI-GGDSLP------- 146 (226)
T ss_pred HHHHHHHHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCC---CHHHHHHHHHHcCCccCccEEE-cCCCCC-------
Confidence 122222221 23678999999999999999999999995 5688889999999998887643 222211
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHh
Q 018946 226 VLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQS 305 (348)
Q Consensus 226 v~g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~ 305 (348)
..||+|++ |+.++++++++|++|++|||+.+
T Consensus 147 -----------------------------------~~kp~~~~--------------~~~~~~~~~~~~~~~i~igD~~~ 177 (226)
T PRK13222 147 -----------------------------------NKKPDPAP--------------LLLACEKLGLDPEEMLFVGDSRN 177 (226)
T ss_pred -----------------------------------CCCcChHH--------------HHHHHHHcCCChhheEEECCCHH
Confidence 12999999 99999999999999999999999
Q ss_pred hHHHHHHcCCcEEEECCCCCCccc
Q 018946 306 GVAGAQRIGMPCVVMRSRCITTLP 329 (348)
Q Consensus 306 Di~aA~~aG~~~i~v~~~~~~~~~ 329 (348)
|+.+|+++|+++|+|.++......
T Consensus 178 Di~~a~~~g~~~i~v~~g~~~~~~ 201 (226)
T PRK13222 178 DIQAARAAGCPSVGVTYGYNYGEP 201 (226)
T ss_pred HHHHHHHCCCcEEEECcCCCCccc
Confidence 999999999999999987664433
No 23
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.91 E-value=6.8e-24 Score=188.62 Aligned_cols=172 Identities=19% Similarity=0.285 Sum_probs=127.0
Q ss_pred CceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHHh----------h-HHHHH
Q 018946 83 RDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFF----------N-RKNAL 151 (348)
Q Consensus 83 ~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------~-~~~~~ 151 (348)
.+++||||+||||+|+... +..+|+++++++|++ ++........+.............. . ....+
T Consensus 4 ~~~~viFD~DGTLiDs~~~-~~~a~~~~~~~~g~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (188)
T PRK10725 4 RYAGLIFDMDGTILDTEPT-HRKAWREVLGRYGLQ---FDEQAMVALNGSPTWRIAQAIIELNQADLDPHALAREKTEAV 79 (188)
T ss_pred cceEEEEcCCCcCccCHHH-HHHHHHHHHHHcCCC---CCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987 899999999999986 4444333333322111000000000 0 01122
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccc
Q 018946 152 DEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGI 231 (348)
Q Consensus 152 ~~~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v 231 (348)
.+.+. ...++.|| .++|+.|++. ++++|+||+ ....++..++.+|+..+|+.++ +.+++.
T Consensus 80 ~~~~~-~~~~~~~~-~e~L~~L~~~-~~l~I~T~~---~~~~~~~~l~~~~l~~~fd~i~-~~~~~~------------- 139 (188)
T PRK10725 80 KSMLL-DSVEPLPL-IEVVKAWHGR-RPMAVGTGS---ESAIAEALLAHLGLRRYFDAVV-AADDVQ------------- 139 (188)
T ss_pred HHHHh-ccCCCccH-HHHHHHHHhC-CCEEEEcCC---chHHHHHHHHhCCcHhHceEEE-ehhhcc-------------
Confidence 23322 34567886 5899999875 899999995 6789999999999999998754 333332
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHH
Q 018946 232 SSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQ 311 (348)
Q Consensus 232 ~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~ 311 (348)
..||+|++ |+.+++++|++|++||+|||+.+|+++|+
T Consensus 140 -----------------------------~~KP~p~~--------------~~~~~~~~~~~~~~~l~igDs~~di~aA~ 176 (188)
T PRK10725 140 -----------------------------HHKPAPDT--------------FLRCAQLMGVQPTQCVVFEDADFGIQAAR 176 (188)
T ss_pred -----------------------------CCCCChHH--------------HHHHHHHcCCCHHHeEEEeccHhhHHHHH
Confidence 23999999 99999999999999999999999999999
Q ss_pred HcCCcEEEEC
Q 018946 312 RIGMPCVVMR 321 (348)
Q Consensus 312 ~aG~~~i~v~ 321 (348)
++|+++|+|.
T Consensus 177 ~aG~~~i~~~ 186 (188)
T PRK10725 177 AAGMDAVDVR 186 (188)
T ss_pred HCCCEEEeec
Confidence 9999999986
No 24
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.91 E-value=2.5e-23 Score=197.33 Aligned_cols=186 Identities=19% Similarity=0.217 Sum_probs=136.2
Q ss_pred CceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHH-HHH----------HHh-hHHHH
Q 018946 83 RDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDR-MLV----------LFF-NRKNA 150 (348)
Q Consensus 83 ~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~-~~~----------~~~-~~~~~ 150 (348)
.+++||||+||||+|+... +..+|+.+++++|.+. +..+.+....+........ ... ... .....
T Consensus 12 ~~k~viFDlDGTL~Ds~~~-~~~a~~~~~~~~g~~~--~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 88 (272)
T PRK13223 12 LPRLVMFDLDGTLVDSVPD-LAAAVDRMLLELGRPP--AGLEAVRHWVGNGAPVLVRRALAGSIDHDGVDDELAEQALAL 88 (272)
T ss_pred cCCEEEEcCCCccccCHHH-HHHHHHHHHHHcCCCC--CCHHHHHHHhChhHHHHHHHHhcccccccCCCHHHHHHHHHH
Confidence 3569999999999999987 8899999999999873 4444333333321100000 000 000 00122
Q ss_pred HHHHHhc--CCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhccccccc
Q 018946 151 LDEFLAS--KDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLG 228 (348)
Q Consensus 151 ~~~~~~~--~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g 228 (348)
+.+.+.. ...+++||+.++|+.|+++|++++|+||+ ....++.+++++|+..+|+.+ ++.+++.
T Consensus 89 ~~~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~---~~~~~~~~l~~~~i~~~f~~i-~~~d~~~---------- 154 (272)
T PRK13223 89 FMEAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNK---PERFVAPLLDQMKIGRYFRWI-IGGDTLP---------- 154 (272)
T ss_pred HHHHHHhcCcCCccCCCHHHHHHHHHHCCCeEEEEECC---cHHHHHHHHHHcCcHhhCeEE-EecCCCC----------
Confidence 3333322 23568999999999999999999999995 567888999999999988864 3332221
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHH
Q 018946 229 KGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVA 308 (348)
Q Consensus 229 ~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~ 308 (348)
..||+|++ |+.+++++|++|++|++|||+.+||+
T Consensus 155 --------------------------------~~Kp~p~~--------------~~~~~~~~g~~~~~~l~IGD~~~Di~ 188 (272)
T PRK13223 155 --------------------------------QKKPDPAA--------------LLFVMKMAGVPPSQSLFVGDSRSDVL 188 (272)
T ss_pred --------------------------------CCCCCcHH--------------HHHHHHHhCCChhHEEEECCCHHHHH
Confidence 12999999 99999999999999999999999999
Q ss_pred HHHHcCCcEEEECCCCCCccccc
Q 018946 309 GAQRIGMPCVVMRSRCITTLPVS 331 (348)
Q Consensus 309 aA~~aG~~~i~v~~~~~~~~~l~ 331 (348)
+|+++||++++|.++.....++.
T Consensus 189 aA~~aGi~~i~v~~G~~~~~~l~ 211 (272)
T PRK13223 189 AAKAAGVQCVALSYGYNHGRPIA 211 (272)
T ss_pred HHHHCCCeEEEEecCCCCchhhh
Confidence 99999999999998776555443
No 25
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.91 E-value=1.6e-23 Score=193.20 Aligned_cols=200 Identities=15% Similarity=0.057 Sum_probs=129.4
Q ss_pred CCceEEEEecCCcccccccc--ChHHHHHHHH-HHcCCCCCCCCHHHHHHHHhcc---cCc----HHHHHHHHhhH-HHH
Q 018946 82 PRDLAVLLEVDGVLVDAYRF--GNRQAFNVAF-QKLGLDCANWTAPIYTDLLRKS---AGD----EDRMLVLFFNR-KNA 150 (348)
Q Consensus 82 ~~~kaviFDvDGTL~d~~~~--~~~~a~~~~~-~~~gl~~~~~~~~~~~~l~~~~---~~~----~~~~~~~~~~~-~~~ 150 (348)
.++++|||||||||+|+... .+...+.+.+ +..|++ . ++.+..+.+.. ... ........... ...
T Consensus 8 ~~~k~vIFDlDGTL~d~~~~~~~~~~~~~~~~~~~~G~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (224)
T PRK14988 8 QDVDTVLLDMDGTLLDLAFDNYFWQKLVPETLGAQRGIS---P-QEAQEYIRQEYHAVQHTLNWYCLDYWSERLGLDICA 83 (224)
T ss_pred ccCCEEEEcCCCCccchhhhchHHHhhHHHHHHHHhCcC---H-HHHHHHHHHHHHHHcCccceecHHHHHHHhCCCHHH
Confidence 45789999999999996421 1223232223 566775 2 22222221110 000 00111110100 001
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhccccccccc
Q 018946 151 LDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKG 230 (348)
Q Consensus 151 ~~~~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~ 230 (348)
+...+ .....++||+.++|+.|+++|++++|+||+ ....++..++.+|+.++|+.++.+. ++.
T Consensus 84 ~~~~~-~~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~---~~~~~~~~l~~~~l~~~fd~iv~s~-~~~------------ 146 (224)
T PRK14988 84 MTTEQ-GPRAVLREDTVPFLEALKASGKRRILLTNA---HPHNLAVKLEHTGLDAHLDLLLSTH-TFG------------ 146 (224)
T ss_pred HHHHH-hccCCcCCCHHHHHHHHHhCCCeEEEEeCc---CHHHHHHHHHHCCcHHHCCEEEEee-eCC------------
Confidence 11111 234678999999999999999999999995 5678888899999999998765443 221
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHH
Q 018946 231 ISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGA 310 (348)
Q Consensus 231 v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA 310 (348)
..||+|++ |+.+++++|++|++|+||||+..|+++|
T Consensus 147 ------------------------------~~KP~p~~--------------~~~~~~~~~~~p~~~l~igDs~~di~aA 182 (224)
T PRK14988 147 ------------------------------YPKEDQRL--------------WQAVAEHTGLKAERTLFIDDSEPILDAA 182 (224)
T ss_pred ------------------------------CCCCCHHH--------------HHHHHHHcCCChHHEEEEcCCHHHHHHH
Confidence 12999999 9999999999999999999999999999
Q ss_pred HHcCCcE-EEECCCCCCcccccccc-cchhHHHHhhcc
Q 018946 311 QRIGMPC-VVMRSRCITTLPVSKTQ-RLADMLCRILKS 346 (348)
Q Consensus 311 ~~aG~~~-i~v~~~~~~~~~l~~~~-~~~d~l~~~l~~ 346 (348)
+++||.+ ++|.++........... ..++++.+.+..
T Consensus 183 ~~aG~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (224)
T PRK14988 183 AQFGIRYCLGVTNPDSGIAEKQYQRHPSLNDYRRLIPS 220 (224)
T ss_pred HHcCCeEEEEEeCCCCCccchhccCCCcHHHHHHHhhh
Confidence 9999984 67877665433221111 125555555544
No 26
>PRK09449 dUMP phosphatase; Provisional
Probab=99.91 E-value=4.4e-23 Score=188.70 Aligned_cols=174 Identities=15% Similarity=0.207 Sum_probs=124.5
Q ss_pred CCceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHH--Hhcc--------cCcHHHHHHH----Hhh-
Q 018946 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDL--LRKS--------AGDEDRMLVL----FFN- 146 (348)
Q Consensus 82 ~~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l--~~~~--------~~~~~~~~~~----~~~- 146 (348)
|++++|+||+||||+|.. ...+++++++++|++ ++.+.+..+ .+.. ......+... ...
T Consensus 1 m~~k~iiFDlDGTLid~~---~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (224)
T PRK09449 1 MKYDWILFDADETLFHFD---AFAGLQRMFSRYGVD---FTAEDFQDYQAVNKPLWVDYQNGAITALQLQHTRFESWAEK 74 (224)
T ss_pred CCccEEEEcCCCchhcch---hhHHHHHHHHHhCCC---CcHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999854 347889999999986 344333322 1110 0001111100 000
Q ss_pred -------HHHHHHHHHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhh
Q 018946 147 -------RKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVER 219 (348)
Q Consensus 147 -------~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~ 219 (348)
....+.+.+.. ...++||+.++|+.|+ +|++++|+||+ ....++..++.+|+..+|+.++.+.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~L~~L~-~~~~~~i~Tn~---~~~~~~~~l~~~~l~~~fd~v~~~~~~~-- 147 (224)
T PRK09449 75 LNVTPGELNSAFLNAMAE-ICTPLPGAVELLNALR-GKVKMGIITNG---FTELQQVRLERTGLRDYFDLLVISEQVG-- 147 (224)
T ss_pred cCCCHHHHHHHHHHHHhh-cCccCccHHHHHHHHH-hCCeEEEEeCC---cHHHHHHHHHhCChHHHcCEEEEECccC--
Confidence 01222232222 3678999999999999 58999999995 5688888999999999998876543221
Q ss_pred hhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCC-CcEE
Q 018946 220 SLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPV-RNCF 298 (348)
Q Consensus 220 ~~~~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p-~~~i 298 (348)
..||+|++ |+.+++++|+.+ ++|+
T Consensus 148 -----------------------------------------~~KP~p~~--------------~~~~~~~~~~~~~~~~~ 172 (224)
T PRK09449 148 -----------------------------------------VAKPDVAI--------------FDYALEQMGNPDRSRVL 172 (224)
T ss_pred -----------------------------------------CCCCCHHH--------------HHHHHHHcCCCCcccEE
Confidence 12999999 999999999854 8999
Q ss_pred EEecCH-hhHHHHHHcCCcEEEECCC
Q 018946 299 LIAGSQ-SGVAGAQRIGMPCVVMRSR 323 (348)
Q Consensus 299 ~VGDs~-~Di~aA~~aG~~~i~v~~~ 323 (348)
||||+. +|+.+|+++||.+|++..+
T Consensus 173 ~vgD~~~~Di~~A~~aG~~~i~~~~~ 198 (224)
T PRK09449 173 MVGDNLHSDILGGINAGIDTCWLNAH 198 (224)
T ss_pred EEcCCcHHHHHHHHHCCCcEEEECCC
Confidence 999998 6999999999999999753
No 27
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.91 E-value=6.6e-23 Score=186.52 Aligned_cols=177 Identities=15% Similarity=0.222 Sum_probs=128.9
Q ss_pred ceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHh----------cccCcHHHHH----HHHhh---
Q 018946 84 DLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLR----------KSAGDEDRML----VLFFN--- 146 (348)
Q Consensus 84 ~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~----------~~~~~~~~~~----~~~~~--- 146 (348)
+++|+||+||||+|+... +..+|.++++++|++. +......... .......... ...+.
T Consensus 1 ~k~viFD~DGTL~d~~~~-~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAA-EALALRLLFEDQGIPL---TEDMFAQYKEINQGLWRAYEEGKITKDEVVNTRFSALLKEYN 76 (224)
T ss_pred CCEEEEcCcCcccccchH-HHHHHHHHHHHhCCCc---cHHHHHHHHHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHhC
Confidence 479999999999999986 7788999999999863 2222211111 0001111100 00000
Q ss_pred -------HHHHHHHHHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhh
Q 018946 147 -------RKNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVER 219 (348)
Q Consensus 147 -------~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~ 219 (348)
....+.+.+. ....++||+.++|+.|+++ ++++|+||+ ....++.+++.+|+..+|+.++.+.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~L~~l~~~-~~~~i~Sn~---~~~~~~~~l~~~~l~~~fd~i~~~~~~~-- 149 (224)
T TIGR02254 77 TEADEALLNQKYLRFLE-EGHQLLPGAFELMENLQQK-FRLYIVTNG---VRETQYKRLRKSGLFPFFDDIFVSEDAG-- 149 (224)
T ss_pred CCCcHHHHHHHHHHHHh-ccCeeCccHHHHHHHHHhc-CcEEEEeCC---chHHHHHHHHHCCcHhhcCEEEEcCccC--
Confidence 0122222222 2357899999999999999 999999996 5688899999999999998765443321
Q ss_pred hhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHc-CCCCCcEE
Q 018946 220 SLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYA-EKPVRNCF 298 (348)
Q Consensus 220 ~~~~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~l-gv~p~~~i 298 (348)
..||+|++ |+.+++++ |++|++|+
T Consensus 150 -----------------------------------------~~KP~~~~--------------~~~~~~~~~~~~~~~~v 174 (224)
T TIGR02254 150 -----------------------------------------IQKPDKEI--------------FNYALERMPKFSKEEVL 174 (224)
T ss_pred -----------------------------------------CCCCCHHH--------------HHHHHHHhcCCCchheE
Confidence 13999999 99999999 99999999
Q ss_pred EEecCH-hhHHHHHHcCCcEEEECCCCCC
Q 018946 299 LIAGSQ-SGVAGAQRIGMPCVVMRSRCIT 326 (348)
Q Consensus 299 ~VGDs~-~Di~aA~~aG~~~i~v~~~~~~ 326 (348)
||||+. +|+.+|+++||++|++..+...
T Consensus 175 ~igD~~~~di~~A~~~G~~~i~~~~~~~~ 203 (224)
T TIGR02254 175 MIGDSLTADIKGGQNAGLDTCWMNPDMHP 203 (224)
T ss_pred EECCCcHHHHHHHHHCCCcEEEECCCCCC
Confidence 999998 7999999999999999875443
No 28
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.91 E-value=3e-23 Score=187.02 Aligned_cols=170 Identities=17% Similarity=0.223 Sum_probs=121.9
Q ss_pred eEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHH----HHHh----------cc-cCcHH----HHHHHHh
Q 018946 85 LAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYT----DLLR----------KS-AGDED----RMLVLFF 145 (348)
Q Consensus 85 kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~----~l~~----------~~-~~~~~----~~~~~~~ 145 (348)
++|+||+||||+|+... +..+|+++++++|++ ++..... .... .. +.... .+....+
T Consensus 1 k~viFDlDGTL~d~~~~-~~~a~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 76 (203)
T TIGR02252 1 KLITFDAVGTLLALKEP-VGEVYCEIARKYGVE---VSPDELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTF 76 (203)
T ss_pred CeEEEecCCceeeeCCC-HHHHHHHHHHHhCCC---CCHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 58999999999999886 889999999999997 3332211 1110 00 11111 1111111
Q ss_pred hH---------H---HHHHHHHh-cCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheee
Q 018946 146 NR---------K---NALDEFLA-SKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIV 212 (348)
Q Consensus 146 ~~---------~---~~~~~~~~-~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~ 212 (348)
.. . +.+.+.+. .....++||+.++|+.|+++|++++|+||+. ..++..++.+|+..+|+.++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~----~~~~~~l~~~~l~~~fd~i~~ 152 (203)
T TIGR02252 77 GRAGVPDPESFEKIFEELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFD----SRLRGLLEALGLLEYFDFVVT 152 (203)
T ss_pred HhcCCCCchhHHHHHHHHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCc----hhHHHHHHHCCcHHhcceEEe
Confidence 10 1 11222121 2235789999999999999999999999962 345788999999999987654
Q ss_pred cchhhhhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCC
Q 018946 213 GNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEK 292 (348)
Q Consensus 213 ~~~e~~~~~~~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv 292 (348)
+.+ +. ..||+|++ |+.+++++|+
T Consensus 153 s~~-~~------------------------------------------~~KP~~~~--------------~~~~~~~~~~ 175 (203)
T TIGR02252 153 SYE-VG------------------------------------------AEKPDPKI--------------FQEALERAGI 175 (203)
T ss_pred ecc-cC------------------------------------------CCCCCHHH--------------HHHHHHHcCC
Confidence 432 11 23999999 9999999999
Q ss_pred CCCcEEEEecCH-hhHHHHHHcCCcEEE
Q 018946 293 PVRNCFLIAGSQ-SGVAGAQRIGMPCVV 319 (348)
Q Consensus 293 ~p~~~i~VGDs~-~Di~aA~~aG~~~i~ 319 (348)
+|++|+||||+. +||.+|+++||++|+
T Consensus 176 ~~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 176 SPEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred ChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 999999999997 899999999999885
No 29
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.90 E-value=3.5e-23 Score=186.11 Aligned_cols=106 Identities=16% Similarity=0.236 Sum_probs=93.3
Q ss_pred CCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhH
Q 018946 159 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 238 (348)
Q Consensus 159 ~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~ 238 (348)
..+++||+.++|+.|+++|++++|+||+ ....++..++++|+.++|+.++.+. ++.
T Consensus 90 ~~~~~~~~~~~L~~L~~~g~~~~i~Sn~---~~~~~~~~l~~~gl~~~fd~i~~s~-~~~-------------------- 145 (198)
T TIGR01428 90 RLPPHPDVPAGLRALKERGYRLAILSNG---SPAMLKSLVKHAGLDDPFDAVLSAD-AVR-------------------- 145 (198)
T ss_pred cCCCCCCHHHHHHHHHHCCCeEEEEeCC---CHHHHHHHHHHCCChhhhheeEehh-hcC--------------------
Confidence 3678999999999999999999999996 5688899999999999998765433 221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEE
Q 018946 239 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 318 (348)
Q Consensus 239 ~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i 318 (348)
..||+|++ |+.+++++|++|++|+||||+.+|+.+|+++||++|
T Consensus 146 ----------------------~~KP~~~~--------------~~~~~~~~~~~p~~~~~vgD~~~Di~~A~~~G~~~i 189 (198)
T TIGR01428 146 ----------------------AYKPAPQV--------------YQLALEALGVPPDEVLFVASNPWDLGGAKKFGFKTA 189 (198)
T ss_pred ----------------------CCCCCHHH--------------HHHHHHHhCCChhhEEEEeCCHHHHHHHHHCCCcEE
Confidence 13999999 999999999999999999999999999999999999
Q ss_pred EECCCC
Q 018946 319 VMRSRC 324 (348)
Q Consensus 319 ~v~~~~ 324 (348)
++..+.
T Consensus 190 ~v~r~~ 195 (198)
T TIGR01428 190 WVNRPG 195 (198)
T ss_pred EecCCC
Confidence 998644
No 30
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.89 E-value=3.8e-23 Score=178.67 Aligned_cols=167 Identities=23% Similarity=0.373 Sum_probs=126.4
Q ss_pred EEEecCCccccccccChHHHHHH-HHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHHhhH--------HHHHHHHHhc
Q 018946 87 VLLEVDGVLVDAYRFGNRQAFNV-AFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNR--------KNALDEFLAS 157 (348)
Q Consensus 87 viFDvDGTL~d~~~~~~~~a~~~-~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 157 (348)
|+||+||||+|+... +..+|.. +++.++.+ ++.+.+....+.. ...+....+.. .+.+.++...
T Consensus 1 iifD~dgtL~d~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPA-IFRALQRLALEEFGLE---ISAEELRELFGKS---YEEALERLLERFGIDPEEIQELFREYNLE 73 (176)
T ss_dssp EEEESBTTTEEHHHH-HHHHHHHHHHHHTTHH---HHHHHHHHHTTSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEECCCCcEeCHHH-HHHHHHHHHHHHhCCC---CCHHHHHHHhCCC---HHHHHHHhhhccchhHHHHHHHhhhhhhh
Confidence 799999999998875 6788887 47778775 4334444433222 22222111111 2334443222
Q ss_pred CCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchh
Q 018946 158 KDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDE 237 (348)
Q Consensus 158 ~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~ 237 (348)
...+++||+.++|+.|+++|++++++||+ ....++..++++|+.++|+.++.+.+ ..
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~---~~~~~~~~l~~~~~~~~f~~i~~~~~-~~------------------- 130 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNG---SRERIERVLERLGLDDYFDEIISSDD-VG------------------- 130 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESS---EHHHHHHHHHHTTHGGGCSEEEEGGG-SS-------------------
T ss_pred hccchhhhhhhhhhhcccccceeEEeecC---Ccccccccccccccccccccccccch-hh-------------------
Confidence 45789999999999999999999999995 57888999999999999997754432 21
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcE
Q 018946 238 QLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPC 317 (348)
Q Consensus 238 ~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~ 317 (348)
..||+|++ |+.+++++|++|++|+||||+..|+.+|+++||++
T Consensus 131 -----------------------~~Kp~~~~--------------~~~~~~~~~~~p~~~~~vgD~~~d~~~A~~~G~~~ 173 (176)
T PF13419_consen 131 -----------------------SRKPDPDA--------------YRRALEKLGIPPEEILFVGDSPSDVEAAKEAGIKT 173 (176)
T ss_dssp -----------------------SSTTSHHH--------------HHHHHHHHTSSGGGEEEEESSHHHHHHHHHTTSEE
T ss_pred -----------------------hhhhHHHH--------------HHHHHHHcCCCcceEEEEeCCHHHHHHHHHcCCeE
Confidence 12999999 99999999999999999999999999999999999
Q ss_pred EEE
Q 018946 318 VVM 320 (348)
Q Consensus 318 i~v 320 (348)
|+|
T Consensus 174 i~v 176 (176)
T PF13419_consen 174 IWV 176 (176)
T ss_dssp EEE
T ss_pred EeC
Confidence 986
No 31
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.89 E-value=1.6e-22 Score=204.92 Aligned_cols=194 Identities=11% Similarity=0.116 Sum_probs=135.9
Q ss_pred CCceEEEEecCCccccccccChHHHHHHHHHHcCCC--CCCC-CHHHHHHHHhcccCcHHHHHHHHhhH------HHHH-
Q 018946 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLD--CANW-TAPIYTDLLRKSAGDEDRMLVLFFNR------KNAL- 151 (348)
Q Consensus 82 ~~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~--~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~- 151 (348)
+++++||||+||||+|+... +..+|++++++++.. +..+ +.+.+...++................ ...+
T Consensus 239 ~m~k~vIFDlDGTLiDs~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~ 317 (459)
T PRK06698 239 EMLQALIFDMDGTLFQTDKI-LELSLDDTFDHLRSLQLWDTVTPIDKYREIMGVPLPKVWEALLPDHSLEIREQTDAYFL 317 (459)
T ss_pred HhhhheeEccCCceecchhH-HHHHHHHHHHHHhhhcccCCCCCHHHHHHHcCCChHHHHHHHhhhcchhHHHHHHHHHH
Confidence 44689999999999999998 899999999997421 0011 33445555443321111110000000 1122
Q ss_pred ---HHHHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhccccccc
Q 018946 152 ---DEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLG 228 (348)
Q Consensus 152 ---~~~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g 228 (348)
.+.+.....+++||+.++|+.|+++|++++|+||+ ....++.+++++|+.++|+.++. .+++..
T Consensus 318 ~~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~---~~~~~~~~l~~~~l~~~f~~i~~-~d~v~~--------- 384 (459)
T PRK06698 318 ERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNG---LTEYLRAIVSYYDLDQWVTETFS-IEQINS--------- 384 (459)
T ss_pred HHhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCC---chHHHHHHHHHCCcHhhcceeEe-cCCCCC---------
Confidence 22222335688999999999999999999999995 67899999999999999987643 332211
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHH
Q 018946 229 KGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVA 308 (348)
Q Consensus 229 ~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~ 308 (348)
||.|++ |..++++++ |++|++|||+.+|+.
T Consensus 385 ----------------------------------~~kP~~--------------~~~al~~l~--~~~~v~VGDs~~Di~ 414 (459)
T PRK06698 385 ----------------------------------LNKSDL--------------VKSILNKYD--IKEAAVVGDRLSDIN 414 (459)
T ss_pred ----------------------------------CCCcHH--------------HHHHHHhcC--cceEEEEeCCHHHHH
Confidence 666778 888998875 789999999999999
Q ss_pred HHHHcCCcEEEECCCCCCcccccccccchhH
Q 018946 309 GAQRIGMPCVVMRSRCITTLPVSKTQRLADM 339 (348)
Q Consensus 309 aA~~aG~~~i~v~~~~~~~~~l~~~~~~~d~ 339 (348)
+|+++||.+|++.++......+..+..++++
T Consensus 415 aAk~AG~~~I~v~~~~~~~~~~~~~d~~i~~ 445 (459)
T PRK06698 415 AAKDNGLIAIGCNFDFAQEDELAQADIVIDD 445 (459)
T ss_pred HHHHCCCeEEEEeCCCCcccccCCCCEEeCC
Confidence 9999999999999876655455444444333
No 32
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.89 E-value=2.4e-22 Score=220.90 Aligned_cols=181 Identities=20% Similarity=0.290 Sum_probs=136.1
Q ss_pred CCCCceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHH-----hhH-------
Q 018946 80 NPPRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLF-----FNR------- 147 (348)
Q Consensus 80 ~~~~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~------- 147 (348)
..+++++|||||||||+|+... +..+|+++++++|++ ++.+.+....+............. ...
T Consensus 71 ~~~~ikaVIFDlDGTLiDS~~~-~~~a~~~~~~~~G~~---it~e~~~~~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 146 (1057)
T PLN02919 71 EWGKVSAVLFDMDGVLCNSEEP-SRRAAVDVFAEMGVE---VTVEDFVPFMGTGEANFLGGVASVKGVKGFDPDAAKKRF 146 (1057)
T ss_pred cCCCCCEEEECCCCCeEeChHH-HHHHHHHHHHHcCCC---CCHHHHHHHhCCCHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 3467899999999999999987 899999999999986 666655555543211111000000 000
Q ss_pred HHHHHHHHh-cCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCc-ccchheeecchhhhhhhcccc
Q 018946 148 KNALDEFLA-SKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE-RISKIKIVGNEEVERSLYGQF 225 (348)
Q Consensus 148 ~~~~~~~~~-~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~-~~f~~~i~~~~e~~~~~~~~~ 225 (348)
.+.+.+.+. .....++||+.++|+.|+++|++++|+||+ ....++..++++|+. .+|+.++.+ +++.
T Consensus 147 ~~~~~~~~~~~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~---~~~~~~~~L~~~gl~~~~Fd~iv~~-~~~~------- 215 (1057)
T PLN02919 147 FEIYLEKYAKPNSGIGFPGALELITQCKNKGLKVAVASSA---DRIKVDANLAAAGLPLSMFDAIVSA-DAFE------- 215 (1057)
T ss_pred HHHHHHHhhhcccCccCccHHHHHHHHHhCCCeEEEEeCC---cHHHHHHHHHHcCCChhHCCEEEEC-cccc-------
Confidence 112222221 122347999999999999999999999995 567888999999996 788866433 2221
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHh
Q 018946 226 VLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQS 305 (348)
Q Consensus 226 v~g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~ 305 (348)
..||+|++ |+.+++++|++|++|++|||+..
T Consensus 216 -----------------------------------~~KP~Pe~--------------~~~a~~~lgv~p~e~v~IgDs~~ 246 (1057)
T PLN02919 216 -----------------------------------NLKPAPDI--------------FLAAAKILGVPTSECVVIEDALA 246 (1057)
T ss_pred -----------------------------------cCCCCHHH--------------HHHHHHHcCcCcccEEEEcCCHH
Confidence 12999999 99999999999999999999999
Q ss_pred hHHHHHHcCCcEEEECCCC
Q 018946 306 GVAGAQRIGMPCVVMRSRC 324 (348)
Q Consensus 306 Di~aA~~aG~~~i~v~~~~ 324 (348)
|+++|+++||++|+|.++.
T Consensus 247 Di~AA~~aGm~~I~v~~~~ 265 (1057)
T PLN02919 247 GVQAARAAGMRCIAVTTTL 265 (1057)
T ss_pred HHHHHHHcCCEEEEECCCC
Confidence 9999999999999999875
No 33
>PLN02811 hydrolase
Probab=99.88 E-value=6.3e-22 Score=181.48 Aligned_cols=189 Identities=22% Similarity=0.294 Sum_probs=130.3
Q ss_pred cCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHHh------h-------HHHHHHHHHhc
Q 018946 91 VDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFF------N-------RKNALDEFLAS 157 (348)
Q Consensus 91 vDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~-------~~~~~~~~~~~ 157 (348)
|||||+|+... +..+|+++++++|++ ++.+.+...++.............. . +...+.++.
T Consensus 1 ~DGTL~Ds~~~-~~~a~~~~~~~~g~~---~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 74 (220)
T PLN02811 1 MDGLLLDTEKF-YTEVQEKILARYGKT---FDWSLKAKMMGKKAIEAARIFVEESGLSDSLSPEDFLVEREAMLQDLF-- 74 (220)
T ss_pred CCCcceecHHH-HHHHHHHHHHHcCCC---CCHHHHHHccCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH--
Confidence 79999999987 999999999999996 4555455454433211111111100 0 011122221
Q ss_pred CCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecch-hhhhhhcccccccccccCCch
Q 018946 158 KDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNE-EVERSLYGQFVLGKGISSGVD 236 (348)
Q Consensus 158 ~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~-e~~~~~~~~~v~g~~v~~~~~ 236 (348)
...+++||+.++|+.|+++|++++|+||+.+ ........+..++.++|+.++.+.+ ++.
T Consensus 75 ~~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~--~~~~~~~~~~~~l~~~f~~i~~~~~~~~~------------------ 134 (220)
T PLN02811 75 PTSDLMPGAERLVRHLHAKGIPIAIATGSHK--RHFDLKTQRHGELFSLMHHVVTGDDPEVK------------------ 134 (220)
T ss_pred hhCCCCccHHHHHHHHHHCCCcEEEEeCCch--hhHHHHHcccHHHHhhCCEEEECChhhcc------------------
Confidence 2367899999999999999999999999621 2233334444577778876543331 221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcC---CCCCcEEEEecCHhhHHHHHHc
Q 018946 237 EQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAE---KPVRNCFLIAGSQSGVAGAQRI 313 (348)
Q Consensus 237 ~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lg---v~p~~~i~VGDs~~Di~aA~~a 313 (348)
..||+|++ |+.++++++ ++|++|+||||+..|+++|+++
T Consensus 135 ------------------------~~KP~p~~--------------~~~a~~~~~~~~~~~~~~v~IgDs~~di~aA~~a 176 (220)
T PLN02811 135 ------------------------QGKPAPDI--------------FLAAARRFEDGPVDPGKVLVFEDAPSGVEAAKNA 176 (220)
T ss_pred ------------------------CCCCCcHH--------------HHHHHHHhCCCCCCccceEEEeccHhhHHHHHHC
Confidence 13999999 999999996 9999999999999999999999
Q ss_pred CCcEEEECCCCCCcccccccccchhHHHHhhccc
Q 018946 314 GMPCVVMRSRCITTLPVSKTQRLADMLCRILKSI 347 (348)
Q Consensus 314 G~~~i~v~~~~~~~~~l~~~~~~~d~l~~~l~~i 347 (348)
||++|+|.++......+. .++.+++.+.++
T Consensus 177 G~~~i~v~~~~~~~~~~~----~~d~vi~~~~e~ 206 (220)
T PLN02811 177 GMSVVMVPDPRLDKSYCK----GADQVLSSLLDF 206 (220)
T ss_pred CCeEEEEeCCCCcHhhhh----chhhHhcCHhhC
Confidence 999999987654433332 366666666554
No 34
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.87 E-value=7.3e-22 Score=183.50 Aligned_cols=176 Identities=16% Similarity=0.116 Sum_probs=118.1
Q ss_pred CceEEEEecCCccccccccChHHHHHHHHHHcCCC---CCCCCHHHHHHHHhcc---cCc----HH----HHHHHHhhH-
Q 018946 83 RDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLD---CANWTAPIYTDLLRKS---AGD----ED----RMLVLFFNR- 147 (348)
Q Consensus 83 ~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~---~~~~~~~~~~~l~~~~---~~~----~~----~~~~~~~~~- 147 (348)
.+++|+||+||||+|+... +..+|+++++.++.. ...|....+..+.... ... .. ......+..
T Consensus 9 ~~k~iiFDlDGTL~D~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 87 (238)
T PRK10748 9 RISALTFDLDDTLYDNRPV-ILRTEQEALAFVQNYHPALRSFQNEDLQRLRQALREAEPEIYHDVTRWRWRAIEQAMLDA 87 (238)
T ss_pred CceeEEEcCcccccCChHH-HHHHHHHHHHHHHHhCcchhhCCHHHHHHHHHHHHHhCchhhCcHHHHHHHHHHHHHHHc
Confidence 4689999999999999886 778888877654211 1134333333222210 000 00 000000000
Q ss_pred ----H---H---HHHHHHh--cCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecch
Q 018946 148 ----K---N---ALDEFLA--SKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNE 215 (348)
Q Consensus 148 ----~---~---~~~~~~~--~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~ 215 (348)
. . ...+.+. .....++||+.++|+.|++. ++++|+||+.. . ++.+|+.++|+.++.+.
T Consensus 88 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~---~-----~~~~gl~~~fd~i~~~~- 157 (238)
T PRK10748 88 GLSAEEASAGADAAMINFAKWRSRIDVPQATHDTLKQLAKK-WPLVAITNGNA---Q-----PELFGLGDYFEFVLRAG- 157 (238)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHcC-CCEEEEECCCc---h-----HHHCCcHHhhceeEecc-
Confidence 0 0 1111111 12367899999999999975 99999999732 2 47889999998765433
Q ss_pred hhhhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCC
Q 018946 216 EVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVR 295 (348)
Q Consensus 216 e~~~~~~~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~ 295 (348)
++. ..||+|++ |+.+++++|++|+
T Consensus 158 ~~~------------------------------------------~~KP~p~~--------------~~~a~~~~~~~~~ 181 (238)
T PRK10748 158 PHG------------------------------------------RSKPFSDM--------------YHLAAEKLNVPIG 181 (238)
T ss_pred cCC------------------------------------------cCCCcHHH--------------HHHHHHHcCCChh
Confidence 221 12999999 9999999999999
Q ss_pred cEEEEecC-HhhHHHHHHcCCcEEEECCCCC
Q 018946 296 NCFLIAGS-QSGVAGAQRIGMPCVVMRSRCI 325 (348)
Q Consensus 296 ~~i~VGDs-~~Di~aA~~aG~~~i~v~~~~~ 325 (348)
+|+||||+ ..|+.+|+++||.+|++.....
T Consensus 182 ~~~~VGD~~~~Di~~A~~aG~~~i~v~~~~~ 212 (238)
T PRK10748 182 EILHVGDDLTTDVAGAIRCGMQACWINPENG 212 (238)
T ss_pred HEEEEcCCcHHHHHHHHHCCCeEEEEcCCCc
Confidence 99999999 5999999999999999987543
No 35
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.86 E-value=1.1e-21 Score=174.46 Aligned_cols=173 Identities=14% Similarity=0.121 Sum_probs=117.4
Q ss_pred EEEEecCCccccccccChHHHHHHHHH-----HcCCCCCCCCHHHHH-HHHhcccCcHHHHHHHHhhHHHHHHHHHhc--
Q 018946 86 AVLLEVDGVLVDAYRFGNRQAFNVAFQ-----KLGLDCANWTAPIYT-DLLRKSAGDEDRMLVLFFNRKNALDEFLAS-- 157 (348)
Q Consensus 86 aviFDvDGTL~d~~~~~~~~a~~~~~~-----~~gl~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 157 (348)
+||||+||||+|+... +..+|++++. ++|++. .+..... ......+.....+..........+.+.+..
T Consensus 2 ~viFDlDGTL~ds~~~-~~~~~~~~~~~~~~~~~g~~~--~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (184)
T TIGR01993 2 VWFFDLDNTLYPHSAG-IFLQIDRNITEFVAARLKLSE--EEARVLRKDYYREYGTTLAGLMILHEIDADEYLRYVHGRL 78 (184)
T ss_pred eEEEeCCCCCCCCccc-HHHHHHHHHHHHHHHHcCcCH--HHHHHHHHHHHHHHchHHHHHHHhhCCCHHHHHHHHhccC
Confidence 7999999999999876 6788887654 557652 1111111 111111111111111100001222222222
Q ss_pred --CCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCc
Q 018946 158 --KDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGV 235 (348)
Q Consensus 158 --~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~ 235 (348)
....++||+.++|+.|+ .+++|+||+ ....+...++.+|+..+|+.++.+.+ +... .
T Consensus 79 ~~~~~~~~~g~~~~L~~L~---~~~~i~Tn~---~~~~~~~~l~~~gl~~~fd~i~~~~~-~~~~--------~------ 137 (184)
T TIGR01993 79 PYEKLKPDPELRNLLLRLP---GRKIIFTNG---DRAHARRALNRLGIEDCFDGIFCFDT-ANPD--------Y------ 137 (184)
T ss_pred CHHhCCCCHHHHHHHHhCC---CCEEEEeCC---CHHHHHHHHHHcCcHhhhCeEEEeec-ccCc--------c------
Confidence 23568999999999997 489999996 56889999999999999997654332 2110 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCC
Q 018946 236 DEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGM 315 (348)
Q Consensus 236 ~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~ 315 (348)
.+.||+|++ |+.+++++|++|++|+||||+..|+.+|+++||
T Consensus 138 ------------------------~~~KP~p~~--------------~~~~~~~~~~~~~~~l~vgD~~~di~aA~~~G~ 179 (184)
T TIGR01993 138 ------------------------LLPKPSPQA--------------YEKALREAGVDPERAIFFDDSARNIAAAKALGM 179 (184)
T ss_pred ------------------------CCCCCCHHH--------------HHHHHHHhCCCccceEEEeCCHHHHHHHHHcCC
Confidence 012999999 999999999999999999999999999999999
Q ss_pred cEEEE
Q 018946 316 PCVVM 320 (348)
Q Consensus 316 ~~i~v 320 (348)
++|+|
T Consensus 180 ~~i~v 184 (184)
T TIGR01993 180 KTVLV 184 (184)
T ss_pred EEeeC
Confidence 99875
No 36
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.86 E-value=8.5e-22 Score=178.78 Aligned_cols=176 Identities=14% Similarity=0.123 Sum_probs=115.1
Q ss_pred ceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhccc-----------CcHHHHHHHH---hhH--
Q 018946 84 DLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSA-----------GDEDRMLVLF---FNR-- 147 (348)
Q Consensus 84 ~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~---~~~-- 147 (348)
+++||||+||||+|+.. +..+|...+...|++. ......+.+... .....+...+ ++.
T Consensus 2 ik~viFDldGtL~d~~~--~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 75 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSPG--VMRRWETERGLPGLKD----FIVTVNITGPDFNPWARTFERGELTAEAFDGLFRHEYGLRL 75 (211)
T ss_pred ceEEEEecCCceecCHH--HHHHHHHHcCCCCCcc----HHHHHHhcCCCCChHHHHHHcCCCCHHHHHHHHHHHhcccc
Confidence 57999999999999864 4566766655455431 111111211111 0011111110 000
Q ss_pred -----HHHHHHHHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhc
Q 018946 148 -----KNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLY 222 (348)
Q Consensus 148 -----~~~~~~~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~ 222 (348)
...+.........+++||+.++|+.|+++|++++|+||... ........+..+++..+|+.++.+.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~-~~~~~~~~~~~~~l~~~fd~v~~s~~~~----- 149 (211)
T TIGR02247 76 GHDVRIAPVFPLLYGENTKLRPSMMAAIKTLRAKGFKTACITNNFP-TDHSAEEALLPGDIMALFDAVVESCLEG----- 149 (211)
T ss_pred CCCcCchhhHHHHhccccccChhHHHHHHHHHHCCCeEEEEeCCCC-ccchhhhHhhhhhhHhhCCEEEEeeecC-----
Confidence 00111112223567899999999999999999999999632 1111223344567888888765433221
Q ss_pred ccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEec
Q 018946 223 GQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAG 302 (348)
Q Consensus 223 ~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGD 302 (348)
..||+|++ |+.+++++|++|++|+||||
T Consensus 150 --------------------------------------~~KP~p~~--------------~~~~~~~~g~~~~~~l~i~D 177 (211)
T TIGR02247 150 --------------------------------------LRKPDPRI--------------YQLMLERLGVAPEECVFLDD 177 (211)
T ss_pred --------------------------------------CCCCCHHH--------------HHHHHHHcCCCHHHeEEEcC
Confidence 13999999 99999999999999999999
Q ss_pred CHhhHHHHHHcCCcEEEECCC
Q 018946 303 SQSGVAGAQRIGMPCVVMRSR 323 (348)
Q Consensus 303 s~~Di~aA~~aG~~~i~v~~~ 323 (348)
+..|+.+|+++||++|++.+.
T Consensus 178 ~~~di~aA~~aG~~~i~v~~~ 198 (211)
T TIGR02247 178 LGSNLKPAAALGITTIKVSDE 198 (211)
T ss_pred CHHHHHHHHHcCCEEEEECCH
Confidence 999999999999999999763
No 37
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.86 E-value=6e-21 Score=171.86 Aligned_cols=165 Identities=13% Similarity=0.078 Sum_probs=121.0
Q ss_pred eEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCc---------HHHHHHHH--------hhH
Q 018946 85 LAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGD---------EDRMLVLF--------FNR 147 (348)
Q Consensus 85 kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~--------~~~ 147 (348)
++||||+||||+|+... +..+|+++++++|.. ..+.+.+....+..... ........ ...
T Consensus 1 ~~viFD~DGTLiDs~~~-~~~a~~~~~~~~g~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (197)
T TIGR01548 1 QALVLDMDGVMADVSQS-YRRAIIDTVEHFGGV--SVTHADIDHTKLAGNANNDWQLTHRLVVDGLNSASSERVRDAPTL 77 (197)
T ss_pred CceEEecCceEEechHH-HHHHHHHHHHHHcCC--CCCHHHHHHHHHccCccCchHHHHHHHHHhhhcccchhccCCccH
Confidence 47999999999999997 999999999999853 25566666665532210 00100000 000
Q ss_pred ---HHHHHHHHhcC------------CCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheee
Q 018946 148 ---KNALDEFLASK------------DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIV 212 (348)
Q Consensus 148 ---~~~~~~~~~~~------------~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~ 212 (348)
...+.+++... ...+.+++.++|+.|+++|++++|+||+ ....++.+++.+|+..+|+.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~---~~~~~~~~l~~~gl~~~f~~~~~ 154 (197)
T TIGR01548 78 EAVTAQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGR---PRKDAAKFLTTHGLEILFPVQIW 154 (197)
T ss_pred HHHHHHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCC---CHHHHHHHHHHcCchhhCCEEEe
Confidence 12333433221 1245667799999999999999999995 67899999999999999986543
Q ss_pred cchhhhhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCC
Q 018946 213 GNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEK 292 (348)
Q Consensus 213 ~~~e~~~~~~~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv 292 (348)
.+++. . ||+|++ |..+++++|+
T Consensus 155 -~~~~~------------------------------------------~-KP~p~~--------------~~~~~~~~~~ 176 (197)
T TIGR01548 155 -MEDCP------------------------------------------P-KPNPEP--------------LILAAKALGV 176 (197)
T ss_pred -ecCCC------------------------------------------C-CcCHHH--------------HHHHHHHhCc
Confidence 32221 1 999999 9999999999
Q ss_pred CCCcEEEEecCHhhHHHHHHc
Q 018946 293 PVRNCFLIAGSQSGVAGAQRI 313 (348)
Q Consensus 293 ~p~~~i~VGDs~~Di~aA~~a 313 (348)
+|++|++|||+.+|+.+|+++
T Consensus 177 ~~~~~i~vGD~~~Di~aA~~a 197 (197)
T TIGR01548 177 EACHAAMVGDTVDDIITGRKA 197 (197)
T ss_pred CcccEEEEeCCHHHHHHHHhC
Confidence 999999999999999999875
No 38
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.86 E-value=2.1e-21 Score=179.51 Aligned_cols=188 Identities=15% Similarity=0.169 Sum_probs=138.5
Q ss_pred CCCCceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhc--------------ccC-cHHHHHH--
Q 018946 80 NPPRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRK--------------SAG-DEDRMLV-- 142 (348)
Q Consensus 80 ~~~~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~--------------~~~-~~~~~~~-- 142 (348)
..+++|+|+||++|||+....- ....|.++.+.+|+++. .......+.. ..+ -...-++
T Consensus 3 ~~~~iravtfD~~~tLl~~~~~-~~~~y~~i~~~~gl~~~---~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~ 78 (237)
T KOG3085|consen 3 ELMRIRAVTFDAGGTLLATLPP-VMEVYCEIAEAYGLEYD---DSLIETIFRKDFKKMSEKGPFFGLYSGELTLSQWWPK 78 (237)
T ss_pred cccceEEEEEeCCCceeecCCc-cHHHHHHHHHHhCCCCC---HHHHhHhhhHHHHhhcccCCcccccCCcccHHHHHHH
Confidence 4578899999999999985443 56899999999999842 1222111111 111 0111111
Q ss_pred ---HHhhH------HHHH----HHHHhc---CCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCccc
Q 018946 143 ---LFFNR------KNAL----DEFLAS---KDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI 206 (348)
Q Consensus 143 ---~~~~~------~~~~----~~~~~~---~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~ 206 (348)
..+.. +..+ ...+.. ......+++.++++.||.+|..++++|| ++...+.++..+|+..+
T Consensus 79 lv~~~f~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~lq~lR~~g~~l~iisN----~d~r~~~~l~~~~l~~~ 154 (237)
T KOG3085|consen 79 LVESTFGKAGIDYEEELLENFSFRLFSTFAPSAWKYLDGMQELLQKLRKKGTILGIISN----FDDRLRLLLLPLGLSAY 154 (237)
T ss_pred HHHHHhccccchhHHHHHhhhhhheeccccccCceeccHHHHHHHHHHhCCeEEEEecC----CcHHHHHHhhccCHHHh
Confidence 11111 1111 111112 2466788999999999999999999999 57888899999999999
Q ss_pred chheeecchhhhhhhcccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHH
Q 018946 207 SKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAG 286 (348)
Q Consensus 207 f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a 286 (348)
||.+++|++++.. ||||+| |+.+
T Consensus 155 fD~vv~S~e~g~~-------------------------------------------KPDp~I--------------f~~a 177 (237)
T KOG3085|consen 155 FDFVVESCEVGLE-------------------------------------------KPDPRI--------------FQLA 177 (237)
T ss_pred hhhhhhhhhhccC-------------------------------------------CCChHH--------------HHHH
Confidence 9999888876644 999999 9999
Q ss_pred HHHcCCCCCcEEEEecCH-hhHHHHHHcCCcEEEECCCCCCcccccc
Q 018946 287 AEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPCVVMRSRCITTLPVSK 332 (348)
Q Consensus 287 ~~~lgv~p~~~i~VGDs~-~Di~aA~~aG~~~i~v~~~~~~~~~l~~ 332 (348)
++++|+.|++|+||||.. +|+++|+++||.+++|.+..+....+..
T Consensus 178 l~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~~~~~~~~~~ 224 (237)
T KOG3085|consen 178 LERLGVKPEECVHIGDLLENDYEGARNLGWHAILVDNSITALKELEY 224 (237)
T ss_pred HHHhCCChHHeEEecCccccccHhHHHcCCEEEEEccccchhhhhhh
Confidence 999999999999999975 7899999999999999987766655544
No 39
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.85 E-value=4.6e-21 Score=168.65 Aligned_cols=100 Identities=22% Similarity=0.295 Sum_probs=85.6
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHH
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQL 239 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~ 239 (348)
.+++||+.++|+.|+++|++++|+||+ .... ..++.++|+..+|+.++.+.+..
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~---~~~~-~~~~~~~~l~~~f~~i~~~~~~~---------------------- 137 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNS---PRDH-AVLVQELGLRDLFDVVIFSGDVG---------------------- 137 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCC---chHH-HHHHHhcCCHHHCCEEEEcCCCC----------------------
Confidence 678999999999999999999999996 3344 55666699999998775543211
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEE
Q 018946 240 ATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVV 319 (348)
Q Consensus 240 ~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~ 319 (348)
..||+|++ |+.+++++|++|++|++|||+..|+.+|+++||.+|+
T Consensus 138 ---------------------~~KP~~~~--------------~~~~~~~~~~~~~~~~~vgD~~~di~aA~~~G~~~i~ 182 (183)
T TIGR01509 138 ---------------------RGKPDPDI--------------YLLALKKLGLKPEECLFVDDSPAGIEAAKAAGMHTVL 182 (183)
T ss_pred ---------------------CCCCCHHH--------------HHHHHHHcCCCcceEEEEcCCHHHHHHHHHcCCEEEe
Confidence 12999999 9999999999999999999999999999999999997
Q ss_pred E
Q 018946 320 M 320 (348)
Q Consensus 320 v 320 (348)
|
T Consensus 183 v 183 (183)
T TIGR01509 183 V 183 (183)
T ss_pred C
Confidence 5
No 40
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.84 E-value=4.3e-20 Score=169.83 Aligned_cols=179 Identities=22% Similarity=0.338 Sum_probs=132.9
Q ss_pred CCceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHH----hhHHHH---HHHH
Q 018946 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLF----FNRKNA---LDEF 154 (348)
Q Consensus 82 ~~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~---~~~~ 154 (348)
....+++||+||||+|++.+ ...+|+..++++|.. |+.......++....+..+..... ..+++. ..+.
T Consensus 8 ~~~~~~lfD~dG~lvdte~~-y~~~~~~~~~~ygk~---~~~~~~~~~mG~~~~eaa~~~~~~~~dp~s~ee~~~e~~~~ 83 (222)
T KOG2914|consen 8 LKVSACLFDMDGTLVDTEDL-YTEAWQELLDRYGKP---YPWDVKVKSMGKRTSEAARLFVKKLPDPVSREEFNKEEEEI 83 (222)
T ss_pred cceeeEEEecCCcEEecHHH-HHHHHHHHHHHcCCC---ChHHHHHHHcCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 34569999999999999998 889999999999985 777777666665433222222100 011111 1111
Q ss_pred Hh--cCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcC-Ccccchheeecchhhhhhhcccccccccc
Q 018946 155 LA--SKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLG-SERISKIKIVGNEEVERSLYGQFVLGKGI 231 (348)
Q Consensus 155 ~~--~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lg-l~~~f~~~i~~~~e~~~~~~~~~v~g~~v 231 (348)
.. -....+.||+.++++.|+.+|++++++|+. ........+++++ +...|...+.++ |..+
T Consensus 84 ~~~~~~~~~~~PGa~kLv~~L~~~gip~alat~s---~~~~~~~k~~~~~~~~~~f~~~v~~d-------------~~~v 147 (222)
T KOG2914|consen 84 LDRLFMNSILMPGAEKLVNHLKNNGIPVALATSS---TSASFELKISRHEDIFKNFSHVVLGD-------------DPEV 147 (222)
T ss_pred HHHhccccccCCcHHHHHHHHHhCCCCeeEEecC---CcccHHHHHHHhhHHHHhcCCCeecC-------------Cccc
Confidence 11 124678999999999999999999999996 4567777777776 555565554421 2222
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCC-CcEEEEecCHhhHHHH
Q 018946 232 SSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPV-RNCFLIAGSQSGVAGA 310 (348)
Q Consensus 232 ~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p-~~~i~VGDs~~Di~aA 310 (348)
..| ||+|++ |..+++++|..| +.|++++|++.++++|
T Consensus 148 ~~g----------------------------KP~Pdi--------------~l~A~~~l~~~~~~k~lVfeds~~Gv~aa 185 (222)
T KOG2914|consen 148 KNG----------------------------KPDPDI--------------YLKAAKRLGVPPPSKCLVFEDSPVGVQAA 185 (222)
T ss_pred cCC----------------------------CCCchH--------------HHHHHHhcCCCCccceEEECCCHHHHHHH
Confidence 333 999999 999999999999 9999999999999999
Q ss_pred HHcCCcEEEECC
Q 018946 311 QRIGMPCVVMRS 322 (348)
Q Consensus 311 ~~aG~~~i~v~~ 322 (348)
.++||++|+|.+
T Consensus 186 ~aagm~vi~v~~ 197 (222)
T KOG2914|consen 186 KAAGMQVVGVAT 197 (222)
T ss_pred HhcCCeEEEecC
Confidence 999999999998
No 41
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.84 E-value=2.1e-20 Score=170.58 Aligned_cols=106 Identities=16% Similarity=0.154 Sum_probs=94.5
Q ss_pred CCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhH
Q 018946 159 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 238 (348)
Q Consensus 159 ~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~ 238 (348)
..++.|++.++|+.++.+ ++++|+||+ ....+...++++|+.++|+.++++.+.+.
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg---~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~-------------------- 152 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNG---ARPHQERKLRQLGLLDYFDAVFISEDVGV-------------------- 152 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCC---ChHHHHHHHHHcCChhhhheEEEeccccc--------------------
Confidence 478899999999999999 999999996 46889999999999999999877665432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCcE
Q 018946 239 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPC 317 (348)
Q Consensus 239 ~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~-~Di~aA~~aG~~~ 317 (348)
.||+|++ |+.+++++|++|++|+||||+. +||.+|+++||.+
T Consensus 153 -----------------------~KP~~~~--------------f~~~~~~~g~~p~~~l~VgD~~~~di~gA~~~G~~~ 195 (229)
T COG1011 153 -----------------------AKPDPEI--------------FEYALEKLGVPPEEALFVGDSLENDILGARALGMKT 195 (229)
T ss_pred -----------------------CCCCcHH--------------HHHHHHHcCCCcceEEEECCChhhhhHHHHhcCcEE
Confidence 2999999 9999999999999999999997 5779999999999
Q ss_pred EEECCCCC
Q 018946 318 VVMRSRCI 325 (348)
Q Consensus 318 i~v~~~~~ 325 (348)
|++..+..
T Consensus 196 vwi~~~~~ 203 (229)
T COG1011 196 VWINRGGK 203 (229)
T ss_pred EEECCCCC
Confidence 99987653
No 42
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.84 E-value=1.7e-20 Score=169.28 Aligned_cols=107 Identities=12% Similarity=0.177 Sum_probs=87.2
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHH-cCCcccchheeecchhhhhhhcccccccccccCCchhH
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEK-LGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 238 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~-lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~ 238 (348)
.+++||+.++|+.|+++|++++|+||+ ........+.. .++..+|+.++.+.+ +.
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~---~~~~~~~~~~~~~~l~~~fd~v~~s~~-~~-------------------- 138 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNT---NRLHTTFWPEEYPEVRAAADHIYLSQD-LG-------------------- 138 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCC---chhhHHHHHhhchhHHHhcCEEEEecc-cC--------------------
Confidence 468999999999999999999999996 33444444443 477788876654332 21
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEE
Q 018946 239 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 318 (348)
Q Consensus 239 ~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i 318 (348)
.+||+|++ |+.+++++|++|++|+||||+..|+.+|+++||++|
T Consensus 139 ----------------------~~KP~p~~--------------~~~~~~~~~~~p~~~l~vgD~~~di~aA~~aG~~~i 182 (199)
T PRK09456 139 ----------------------MRKPEARI--------------YQHVLQAEGFSAADAVFFDDNADNIEAANALGITSI 182 (199)
T ss_pred ----------------------CCCCCHHH--------------HHHHHHHcCCChhHeEEeCCCHHHHHHHHHcCCEEE
Confidence 23999999 999999999999999999999999999999999999
Q ss_pred EECCCCCC
Q 018946 319 VMRSRCIT 326 (348)
Q Consensus 319 ~v~~~~~~ 326 (348)
++.++...
T Consensus 183 ~~~~~~~~ 190 (199)
T PRK09456 183 LVTDKQTI 190 (199)
T ss_pred EecCCccH
Confidence 99875443
No 43
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.83 E-value=5.2e-20 Score=158.72 Aligned_cols=153 Identities=21% Similarity=0.317 Sum_probs=111.9
Q ss_pred EEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHHhhHHHHHHHHHh-cCCCCCCC
Q 018946 86 AVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRKNALDEFLA-SKDAPLRP 164 (348)
Q Consensus 86 aviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~p 164 (348)
+|+||+||||+|+... ...+|+++++++|.+ .+.+....+.. ...+.. .. ..++++.. .......|
T Consensus 1 ~iifD~DGTL~d~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~g~~---~~~~~~-~~---~~~~~~~~~~~~~~~~~ 67 (154)
T TIGR01549 1 AILFDIDGTLVDSSFA-IRRAFEETLEEFGED-----FQALKALRGLA---EELLYR-IA---TSFEELLGYDAEEAYIR 67 (154)
T ss_pred CeEecCCCcccccHHH-HHHHHHHHHHHhccc-----HHHHHHHHccC---hHHHHH-HH---HHHHHHhCcchhheecc
Confidence 4899999999999765 789999999998864 23333333221 111111 11 11222221 12345689
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHHHHHH
Q 018946 165 GVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATEAR 244 (348)
Q Consensus 165 Gv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~~~~~ 244 (348)
|+.++|+.|+++|++++|+||+ ....+...++.+ +..+|+.++. .++..
T Consensus 68 g~~e~l~~L~~~g~~~~i~T~~---~~~~~~~~~~~~-l~~~f~~i~~-~~~~~-------------------------- 116 (154)
T TIGR01549 68 GAADLLKRLKEAGIKLGIISNG---SLRAQKLLLRKH-LGDYFDLILG-SDEFG-------------------------- 116 (154)
T ss_pred CHHHHHHHHHHCcCeEEEEeCC---chHHHHHHHHHH-HHhcCcEEEe-cCCCC--------------------------
Confidence 9999999999999999999996 467788888887 7777775543 22211
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcC
Q 018946 245 KAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIG 314 (348)
Q Consensus 245 k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG 314 (348)
.||+|++ |..+++++|++| +|+||||+..|+.+|+++|
T Consensus 117 -----------------~Kp~~~~--------------~~~~~~~~~~~~-~~l~iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 117 -----------------AKPEPEI--------------FLAALESLGLPP-EVLHVGDNLNDIEGARNAG 154 (154)
T ss_pred -----------------CCcCHHH--------------HHHHHHHcCCCC-CEEEEeCCHHHHHHHHHcc
Confidence 2999999 999999999999 9999999999999999988
No 44
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.82 E-value=9.5e-20 Score=163.75 Aligned_cols=170 Identities=11% Similarity=0.100 Sum_probs=110.1
Q ss_pred ceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCc-HHHHHH---HHh-hHHHHHHHHHhcC
Q 018946 84 DLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGD-EDRMLV---LFF-NRKNALDEFLASK 158 (348)
Q Consensus 84 ~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~-~~~~~~---~~~-~~~~~~~~~~~~~ 158 (348)
+++||||+||||+|.. .+|.++++++|++ . +.+...++..... ...+.. ... ...+.+.+.....
T Consensus 2 ~k~viFDlDGTLiD~~-----~~~~~~~~~~g~~---~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (197)
T PHA02597 2 KPTILTDVDGVLLSWQ-----SGLPYFAQKYNIP---T--DHILKMIQDERFRDPGELFGCDQELAKKLIEKYNNSDFIR 71 (197)
T ss_pred CcEEEEecCCceEchh-----hccHHHHHhcCCC---H--HHHHHHHhHhhhcCHHHHhcccHHHHHHHhhhhhHHHHHH
Confidence 6799999999999943 5678888888886 2 2222222221110 011100 000 0011121111112
Q ss_pred CCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhH
Q 018946 159 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 238 (348)
Q Consensus 159 ~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~ 238 (348)
...++||+.++|+.|++. ++++++||+ ........++.+++..+|... |+.++.++.
T Consensus 72 ~~~~~pG~~e~L~~L~~~-~~~~i~Tn~---~~~~~~~~~~~~~l~~~f~~~-----------f~~i~~~~~-------- 128 (197)
T PHA02597 72 YLSAYDDALDVINKLKED-YDFVAVTAL---GDSIDALLNRQFNLNALFPGA-----------FSEVLMCGH-------- 128 (197)
T ss_pred hccCCCCHHHHHHHHHhc-CCEEEEeCC---ccchhHHHHhhCCHHHhCCCc-----------ccEEEEecc--------
Confidence 356899999999999997 578888996 334555567788887665421 111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc--CCc
Q 018946 239 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRI--GMP 316 (348)
Q Consensus 239 ~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~a--G~~ 316 (348)
.||+|++ |+.+++++| |++|+||||+..|+.+|+++ ||+
T Consensus 129 -----------------------~~~kp~~--------------~~~a~~~~~--~~~~v~vgDs~~di~aA~~a~~Gi~ 169 (197)
T PHA02597 129 -----------------------DESKEKL--------------FIKAKEKYG--DRVVCFVDDLAHNLDAAHEALSQLP 169 (197)
T ss_pred -----------------------CcccHHH--------------HHHHHHHhC--CCcEEEeCCCHHHHHHHHHHHcCCc
Confidence 1666778 999999999 89999999999999999999 999
Q ss_pred EEEECCCCC
Q 018946 317 CVVMRSRCI 325 (348)
Q Consensus 317 ~i~v~~~~~ 325 (348)
+|++.++..
T Consensus 170 ~i~~~~~~~ 178 (197)
T PHA02597 170 VIHMLRGER 178 (197)
T ss_pred EEEecchhh
Confidence 999988754
No 45
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.82 E-value=2.2e-19 Score=163.63 Aligned_cols=178 Identities=16% Similarity=0.146 Sum_probs=117.3
Q ss_pred CCCceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHH---h-h-HHHHHHHHH
Q 018946 81 PPRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLF---F-N-RKNALDEFL 155 (348)
Q Consensus 81 ~~~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~-~-~~~~~~~~~ 155 (348)
.++.++++|||||||+++.. |.++++.+|.+. -....+....... .......... + . ....+.++.
T Consensus 11 ~~~~k~iiFD~DGTL~~~~~------~~~l~~~~g~~~--~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (219)
T TIGR00338 11 LRSKKLVVFDMDSTLINAET------IDEIAKIAGVEE--EVSEITERAMRGE-LDFKASLRERVALLKGLPVELLKEVR 81 (219)
T ss_pred hccCCEEEEeCcccCCCchH------HHHHHHHhCCHH--HHHHHHHHHHcCC-CCHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 44578999999999999753 466677777641 1112222222111 1111111111 1 1 123334433
Q ss_pred hcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCc
Q 018946 156 ASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGV 235 (348)
Q Consensus 156 ~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~ 235 (348)
. ..+++||+.++|+.|+++|++++|+||+ ....++.+++.+|+..+|...+...+. .+.+.+.+...
T Consensus 82 ~--~~~~~~g~~~~l~~l~~~g~~~~IvS~~---~~~~~~~~l~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~---- 148 (219)
T TIGR00338 82 E--NLPLTEGAEELVKTLKEKGYKVAVISGG---FDLFAEHVKDKLGLDAAFANRLEVEDG----KLTGLVEGPIV---- 148 (219)
T ss_pred h--cCCcCCCHHHHHHHHHHCCCEEEEECCC---cHHHHHHHHHHcCCCceEeeEEEEECC----EEEEEecCccc----
Confidence 2 3578999999999999999999999995 678999999999999888655433211 11111222110
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCC
Q 018946 236 DEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGM 315 (348)
Q Consensus 236 ~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~ 315 (348)
..+|.|++ |+.++++++++|++|+||||+.+|+.+|+.+|+
T Consensus 149 -------------------------~~~~k~~~--------------~~~~~~~~~~~~~~~i~iGDs~~Di~aa~~ag~ 189 (219)
T TIGR00338 149 -------------------------DASYKGKT--------------LLILLRKEGISPENTVAVGDGANDLSMIKAAGL 189 (219)
T ss_pred -------------------------CCcccHHH--------------HHHHHHHcCCCHHHEEEEECCHHHHHHHHhCCC
Confidence 01455666 999999999999999999999999999999999
Q ss_pred cEEE
Q 018946 316 PCVV 319 (348)
Q Consensus 316 ~~i~ 319 (348)
.+++
T Consensus 190 ~i~~ 193 (219)
T TIGR00338 190 GIAF 193 (219)
T ss_pred eEEe
Confidence 8654
No 46
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.79 E-value=3.2e-18 Score=153.16 Aligned_cols=182 Identities=12% Similarity=0.129 Sum_probs=115.4
Q ss_pred CceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHH---Hh-h-----HHHHHHH
Q 018946 83 RDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVL---FF-N-----RKNALDE 153 (348)
Q Consensus 83 ~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~-~-----~~~~~~~ 153 (348)
.+++|+||+||||++.... |..+...+|.+. ....... ............... .+ . ....+.+
T Consensus 3 ~~k~viFD~DGTLid~~~~-----~~~~~~~~~~~~--~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (201)
T TIGR01491 3 MIKLIIFDLDGTLTDVMSS-----WEYLHRRLETCG--LAKKNAE-LFFSGRISYEEWARLDASLWKRRSGRLRREEVEE 74 (201)
T ss_pred cceEEEEeCCCCCcCCccH-----HHHHHHHhCchH--HHHHHHH-HHHcCCCCHHHHHHHHHHHHhhcccCCCHHHHHH
Confidence 3679999999999997642 344444455541 1111111 111111111111100 00 0 0223444
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccC
Q 018946 154 FLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISS 233 (348)
Q Consensus 154 ~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~ 233 (348)
.+. ..+++||+.++|+.|+++|++++|+||+ ....++.+++.+|+..+|...+...+...
T Consensus 75 ~~~--~~~~~~g~~e~l~~l~~~g~~~~IvS~~---~~~~~~~~l~~~g~~~~~~~~~~~~~~g~--------------- 134 (201)
T TIGR01491 75 IFK--EISLRDYAEELVRWLKEKGLKTAIVSGG---IMCLAKKVAEKLNPDYVYSNELVFDEKGF--------------- 134 (201)
T ss_pred HHH--hCCCCccHHHHHHHHHHCCCEEEEEeCC---cHHHHHHHHHHhCCCeEEEEEEEEcCCCe---------------
Confidence 432 3579999999999999999999999995 67899999999999887765544332110
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 018946 234 GVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRI 313 (348)
Q Consensus 234 ~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~a 313 (348)
.||++... ..++++.++ ++.+++++|+++++|++|||+.+|+.+|+.+
T Consensus 135 ----------------------------~~p~~~~~-~~~~~k~~~---~~~~~~~~~~~~~~~i~iGDs~~D~~~a~~a 182 (201)
T TIGR01491 135 ----------------------------IQPDGIVR-VTFDNKGEA---VERLKRELNPSLTETVAVGDSKNDLPMFEVA 182 (201)
T ss_pred ----------------------------EecceeeE-EccccHHHH---HHHHHHHhCCCHHHEEEEcCCHhHHHHHHhc
Confidence 03332210 012222222 7788899999999999999999999999999
Q ss_pred CCcEEEECCCC
Q 018946 314 GMPCVVMRSRC 324 (348)
Q Consensus 314 G~~~i~v~~~~ 324 (348)
|+.+++.+++.
T Consensus 183 g~~~a~~~~~~ 193 (201)
T TIGR01491 183 DISISLGDEGH 193 (201)
T ss_pred CCeEEECCCcc
Confidence 99988876544
No 47
>PLN02954 phosphoserine phosphatase
Probab=99.79 E-value=1.2e-18 Score=159.32 Aligned_cols=183 Identities=14% Similarity=0.105 Sum_probs=114.0
Q ss_pred CCceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHH---hhHHHHHHHHHhcC
Q 018946 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLF---FNRKNALDEFLASK 158 (348)
Q Consensus 82 ~~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 158 (348)
+.+|+|+|||||||++++. +..+++.+|... .| .+....+.+......+.+.... ....+.+.+++...
T Consensus 10 ~~~k~viFDfDGTL~~~~~------~~~~~~~~g~~~-~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (224)
T PLN02954 10 RSADAVCFDVDSTVCVDEG------IDELAEFCGAGE-AV-AEWTAKAMGGSVPFEEALAARLSLFKPSLSQVEEFLEKR 81 (224)
T ss_pred ccCCEEEEeCCCcccchHH------HHHHHHHcCChH-HH-HHHHHHHHCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 4578999999999999754 377788888741 12 2223333332222112121110 01123445555444
Q ss_pred CCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCc--ccchheeecchhhhhhhcccccccccccCCch
Q 018946 159 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE--RISKIKIVGNEEVERSLYGQFVLGKGISSGVD 236 (348)
Q Consensus 159 ~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~--~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~ 236 (348)
...++||+.++|+.|+++|++++|+|++ ....++.+++.+|+. .+|...+...++ +.+.|.......
T Consensus 82 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~---~~~~i~~~l~~~gi~~~~~~~~~~~~~~~-------g~~~g~~~~~~~- 150 (224)
T PLN02954 82 PPRLSPGIPELVKKLRARGTDVYLVSGG---FRQMIAPVAAILGIPPENIFANQILFGDS-------GEYAGFDENEPT- 150 (224)
T ss_pred cCCCCccHHHHHHHHHHCCCEEEEECCC---cHHHHHHHHHHhCCChhhEEEeEEEEcCC-------CcEECccCCCcc-
Confidence 4568999999999999999999999995 678999999999997 355433221111 111111000000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCc
Q 018946 237 EQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMP 316 (348)
Q Consensus 237 ~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~ 316 (348)
...+|.|++ ++.+++++|. ++|++|||+.+|+.+|+.+|+.
T Consensus 151 -----------------------~~~~~K~~~--------------i~~~~~~~~~--~~~i~iGDs~~Di~aa~~~~~~ 191 (224)
T PLN02954 151 -----------------------SRSGGKAEA--------------VQHIKKKHGY--KTMVMIGDGATDLEARKPGGAD 191 (224)
T ss_pred -----------------------cCCccHHHH--------------HHHHHHHcCC--CceEEEeCCHHHHHhhhcCCCC
Confidence 000233344 7888888885 6999999999999999998888
Q ss_pred EEEECC
Q 018946 317 CVVMRS 322 (348)
Q Consensus 317 ~i~v~~ 322 (348)
+++...
T Consensus 192 ~~~~~~ 197 (224)
T PLN02954 192 LFIGYG 197 (224)
T ss_pred EEEecC
Confidence 766543
No 48
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.77 E-value=2.9e-19 Score=157.24 Aligned_cols=158 Identities=16% Similarity=0.181 Sum_probs=105.7
Q ss_pred EEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHH-----HHHHHHhcccCcHH---HHHHHH---hhH------H
Q 018946 86 AVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAP-----IYTDLLRKSAGDED---RMLVLF---FNR------K 148 (348)
Q Consensus 86 aviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~-----~~~~l~~~~~~~~~---~~~~~~---~~~------~ 148 (348)
+|+||+||||+|++.. +..+++.++.+.+.....|+.. ......+....-.+ ...... ++. .
T Consensus 1 ~viFD~DGTL~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGG-VRACLAAIAPEGGAFSDLWRAKQQEYSWRRSLMGDRRAFPEDTVRALRYIADRLGLDAEPKYG 79 (175)
T ss_pred CeEEecCCcCcccHHH-HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5899999999999976 7788888777644210012211 11111111111001 011111 100 1
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhccccccc
Q 018946 149 NALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLG 228 (348)
Q Consensus 149 ~~~~~~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g 228 (348)
..+.+.+ ..++++||+.++|+ +++|+||+ ....++..++++|+..+|+.+ ++.+++..
T Consensus 80 ~~~~~~~--~~~~~~~g~~~~L~-------~~~i~Tn~---~~~~~~~~l~~~~l~~~fd~v-~~~~~~~~--------- 137 (175)
T TIGR01493 80 ERLRDAY--KNLPPWPDSAAALA-------RVAILSNA---SHWAFDQFAQQAGLPWYFDRA-FSVDTVRA--------- 137 (175)
T ss_pred HHHHHHH--hcCCCCCchHHHHH-------HHhhhhCC---CHHHHHHHHHHCCCHHHHhhh-ccHhhcCC---------
Confidence 1222222 24678999999998 48999996 568889999999999999875 44444322
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHH
Q 018946 229 KGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVA 308 (348)
Q Consensus 229 ~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~ 308 (348)
.||+|++ |+.+++++|++|++|+||||+.+|+.
T Consensus 138 ---------------------------------~KP~p~~--------------f~~~~~~~~~~p~~~l~vgD~~~Di~ 170 (175)
T TIGR01493 138 ---------------------------------YKPDPVV--------------YELVFDTVGLPPDRVLMVAAHQWDLI 170 (175)
T ss_pred ---------------------------------CCCCHHH--------------HHHHHHHHCCCHHHeEeEecChhhHH
Confidence 3999999 99999999999999999999999999
Q ss_pred HHHHc
Q 018946 309 GAQRI 313 (348)
Q Consensus 309 aA~~a 313 (348)
+|+++
T Consensus 171 ~A~~~ 175 (175)
T TIGR01493 171 GARKF 175 (175)
T ss_pred HHhcC
Confidence 99864
No 49
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.74 E-value=3.1e-17 Score=159.31 Aligned_cols=179 Identities=15% Similarity=0.143 Sum_probs=117.8
Q ss_pred CCCceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHH--h--hHHHHHHHHHh
Q 018946 81 PPRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLF--F--NRKNALDEFLA 156 (348)
Q Consensus 81 ~~~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~--~~~~~~~~~~~ 156 (348)
...+++|+|||||||+.. ++|.++++..|... ......+..+.....-.+.+.... . .....+.++.
T Consensus 107 ~~~~~LvvfDmDGTLI~~------e~i~eia~~~g~~~--~v~~it~~~m~Geldf~esl~~rv~~l~g~~~~il~~v~- 177 (322)
T PRK11133 107 LRTPGLLVMDMDSTAIQI------ECIDEIAKLAGTGE--EVAEVTERAMRGELDFEASLRQRVATLKGADANILQQVR- 177 (322)
T ss_pred ccCCCEEEEECCCCCcch------HHHHHHHHHhCCch--HHHHHHHHHHcCCcCHHHHHHHHHHHhCCCCHHHHHHHH-
Confidence 356789999999999843 55677777777742 111222222221111111111110 0 0122333333
Q ss_pred cCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCch
Q 018946 157 SKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVD 236 (348)
Q Consensus 157 ~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~ 236 (348)
. .++++||+.++|+.|+++|++++|+|++ +...++.+.+++|++..+...+. +..+.+++.+.|..+ .
T Consensus 178 ~-~l~l~pGa~elL~~Lk~~G~~~aIvSgg---~~~~~~~l~~~Lgld~~~an~le----i~dg~ltg~v~g~iv-~--- 245 (322)
T PRK11133 178 E-NLPLMPGLTELVLKLQALGWKVAIASGG---FTYFADYLRDKLRLDAAVANELE----IMDGKLTGNVLGDIV-D--- 245 (322)
T ss_pred H-hCCCChhHHHHHHHHHHcCCEEEEEECC---cchhHHHHHHHcCCCeEEEeEEE----EECCEEEeEecCccC-C---
Confidence 2 3789999999999999999999999996 56778889999999876543221 112223333333221 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCc
Q 018946 237 EQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMP 316 (348)
Q Consensus 237 ~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~ 316 (348)
.||.+++ ++.+++++|+++++|++|||+.||+.++..+|+.
T Consensus 246 -------------------------~k~K~~~--------------L~~la~~lgi~~~qtIaVGDg~NDl~m~~~AGlg 286 (322)
T PRK11133 246 -------------------------AQYKADT--------------LTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLG 286 (322)
T ss_pred -------------------------cccHHHH--------------HHHHHHHcCCChhhEEEEECCHHHHHHHHHCCCe
Confidence 1555666 9999999999999999999999999999999999
Q ss_pred EEE
Q 018946 317 CVV 319 (348)
Q Consensus 317 ~i~ 319 (348)
+++
T Consensus 287 iA~ 289 (322)
T PRK11133 287 IAY 289 (322)
T ss_pred EEe
Confidence 887
No 50
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.74 E-value=5e-17 Score=149.94 Aligned_cols=114 Identities=13% Similarity=0.069 Sum_probs=90.1
Q ss_pred HHHHHhcC--CCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHc---CCcccchheeecchhhhhhhcccc
Q 018946 151 LDEFLASK--DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKL---GSERISKIKIVGNEEVERSLYGQF 225 (348)
Q Consensus 151 ~~~~~~~~--~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~l---gl~~~f~~~i~~~~e~~~~~~~~~ 225 (348)
+.+.+.+. ..+++||+.++|+.|+++|++++|+||+ .....+.+++.+ ++..+|+..+. ..
T Consensus 83 w~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~---s~~~~~~~~~~~~~~~L~~~f~~~fd-----------~~ 148 (220)
T TIGR01691 83 WRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSG---SVPAQKLLFGHSDAGNLTPYFSGYFD-----------TT 148 (220)
T ss_pred HHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHhhccccchhhhcceEEE-----------eC
Confidence 44444433 3568999999999999999999999996 446667777765 56666654321 00
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHh
Q 018946 226 VLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQS 305 (348)
Q Consensus 226 v~g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~ 305 (348)
.| .||+|++ |..+++++|++|++|+||||+..
T Consensus 149 -~g---------------------------------~KP~p~~--------------y~~i~~~lgv~p~e~lfVgDs~~ 180 (220)
T TIGR01691 149 -VG---------------------------------LKTEAQS--------------YVKIAGQLGSPPREILFLSDIIN 180 (220)
T ss_pred -cc---------------------------------cCCCHHH--------------HHHHHHHhCcChhHEEEEeCCHH
Confidence 00 2999999 99999999999999999999999
Q ss_pred hHHHHHHcCCcEEEECCCCCC
Q 018946 306 GVAGAQRIGMPCVVMRSRCIT 326 (348)
Q Consensus 306 Di~aA~~aG~~~i~v~~~~~~ 326 (348)
|+.+|+++||.+|++..+.+.
T Consensus 181 Di~AA~~AG~~ti~v~r~g~~ 201 (220)
T TIGR01691 181 ELDAARKAGLHTGQLVRPGND 201 (220)
T ss_pred HHHHHHHcCCEEEEEECCCCC
Confidence 999999999999998876544
No 51
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.73 E-value=2.1e-17 Score=146.77 Aligned_cols=137 Identities=12% Similarity=0.068 Sum_probs=89.6
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCC----C--------chHHHHHHHHcCCcccchheeecchhhhhhhcccccc
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKS----G--------DRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVL 227 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~----~--------~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~ 227 (348)
+.++||+.++|+.|+++|++++|+||.... . ......++..+++. |+.++.+.... .
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~i~~~~~~~---------~ 93 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD--LDGIYYCPHHP---------E 93 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC--ccEEEECCCCC---------c
Confidence 457899999999999999999999996310 0 02233445555554 33322211000 0
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 018946 228 GKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGV 307 (348)
Q Consensus 228 g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di 307 (348)
+.+.. ++...++||+|++ |+.+++++|++|++|+||||+..||
T Consensus 94 ~~~~~-----------------------~~~~~~~KP~p~~--------------~~~a~~~~~~~~~~~v~VGDs~~Di 136 (176)
T TIGR00213 94 GVEEF-----------------------RQVCDCRKPKPGM--------------LLQARKELHIDMAQSYMVGDKLEDM 136 (176)
T ss_pred ccccc-----------------------cCCCCCCCCCHHH--------------HHHHHHHcCcChhhEEEEcCCHHHH
Confidence 00000 0001235999999 9999999999999999999999999
Q ss_pred HHHHHcCCcE-EEECCCCCCcccccccccchhHHHHhhccc
Q 018946 308 AGAQRIGMPC-VVMRSRCITTLPVSKTQRLADMLCRILKSI 347 (348)
Q Consensus 308 ~aA~~aG~~~-i~v~~~~~~~~~l~~~~~~~d~l~~~l~~i 347 (348)
.+|+++|+++ +++.++......... .+|.+++.+.+|
T Consensus 137 ~aA~~aG~~~~i~v~~g~~~~~~~~~---~ad~~i~~~~el 174 (176)
T TIGR00213 137 QAGVAAKVKTNVLVRTGKPITPEAEN---IADWVLNSLADL 174 (176)
T ss_pred HHHHHCCCcEEEEEecCCcccccccc---cCCEEeccHHHh
Confidence 9999999998 799887653322211 245555555443
No 52
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.72 E-value=2.7e-17 Score=146.53 Aligned_cols=112 Identities=14% Similarity=0.032 Sum_probs=83.0
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCC----C--------chHHHHHHHHcCCcccchheeecchhhhhhhcccccc
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKS----G--------DRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVL 227 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~----~--------~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~ 227 (348)
+.++||+.++|+.|+++|++++|+||.... + ...+..+++++|+ .|+.++.+... .
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~f~~i~~~~~~----------~ 95 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGG--RLDGIYYCPHH----------P 95 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCC--ccceEEECCCC----------C
Confidence 357899999999999999999999996310 0 1233445666665 24433322110 0
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 018946 228 GKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGV 307 (348)
Q Consensus 228 g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di 307 (348)
++.+ ...||+|++ |+.+++++|++|++|+||||+.+|+
T Consensus 96 ~~~~----------------------------~~~KP~p~~--------------~~~~~~~l~~~~~~~~~VgDs~~Di 133 (181)
T PRK08942 96 EDGC----------------------------DCRKPKPGM--------------LLSIAERLNIDLAGSPMVGDSLRDL 133 (181)
T ss_pred CCCC----------------------------cCCCCCHHH--------------HHHHHHHcCCChhhEEEEeCCHHHH
Confidence 0001 123999999 9999999999999999999999999
Q ss_pred HHHHHcCCcEEEECCCCC
Q 018946 308 AGAQRIGMPCVVMRSRCI 325 (348)
Q Consensus 308 ~aA~~aG~~~i~v~~~~~ 325 (348)
.+|+++||.+|++.++..
T Consensus 134 ~~A~~aG~~~i~v~~g~~ 151 (181)
T PRK08942 134 QAAAAAGVTPVLVRTGKG 151 (181)
T ss_pred HHHHHCCCeEEEEcCCCC
Confidence 999999999999987754
No 53
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.72 E-value=3e-17 Score=141.77 Aligned_cols=107 Identities=14% Similarity=0.167 Sum_probs=82.5
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCC------------chHHHHHHHHcCCccc--chheeecchhhhhhhccccc
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSG------------DRIARSVVEKLGSERI--SKIKIVGNEEVERSLYGQFV 226 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~------------~~~~~~il~~lgl~~~--f~~~i~~~~e~~~~~~~~~v 226 (348)
.++||+.++|+.|+++|++++|+||..+.. ...+...++.+|+... +.......+..
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~--------- 97 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNC--------- 97 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCC---------
Confidence 478999999999999999999999963100 1456677888888632 11110001100
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhh
Q 018946 227 LGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSG 306 (348)
Q Consensus 227 ~g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~D 306 (348)
+.+||+|++ |+.+++++|++|++|+||||+..|
T Consensus 98 ---------------------------------~~~KP~~~~--------------~~~~~~~~~~~~~e~i~IGDs~~D 130 (147)
T TIGR01656 98 ---------------------------------SCRKPKPGL--------------ILEALKRLGVDASRSLVVGDRLRD 130 (147)
T ss_pred ---------------------------------CCCCCCHHH--------------HHHHHHHcCCChHHEEEEcCCHHH
Confidence 123999999 999999999999999999999999
Q ss_pred HHHHHHcCCcEEEECCC
Q 018946 307 VAGAQRIGMPCVVMRSR 323 (348)
Q Consensus 307 i~aA~~aG~~~i~v~~~ 323 (348)
+++|+++||.+|++.++
T Consensus 131 i~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 131 LQAARNAGLAAVLLVDG 147 (147)
T ss_pred HHHHHHCCCCEEEecCC
Confidence 99999999999999764
No 54
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.70 E-value=3.5e-16 Score=143.40 Aligned_cols=178 Identities=16% Similarity=0.206 Sum_probs=106.8
Q ss_pred CceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHH---HHHH-hhHHHHHHHHHhcC
Q 018946 83 RDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRM---LVLF-FNRKNALDEFLASK 158 (348)
Q Consensus 83 ~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~ 158 (348)
+.++|+|||||||++.+.. . .++++++.. .| +++...++.....-.+.+ .... ....+.+.+++...
T Consensus 2 ~~~~vifDfDgTi~~~d~~-~-----~~~~~~~~~--~~-~~i~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 72 (219)
T PRK09552 2 MSIQIFCDFDGTITNNDNI-I-----AIMKKFAPP--EW-EELKDDILSQELSIQEGVGQMFQLLPSNLKEEIIQFLLET 72 (219)
T ss_pred CCcEEEEcCCCCCCcchhh-H-----HHHHHhCHH--HH-HHHHHHHHhCCcCHHHHHHHHHHhCCCCchHHHHHHHHhC
Confidence 3459999999999998864 2 244444432 22 222222222111111111 1111 11124444544433
Q ss_pred CCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhH
Q 018946 159 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 238 (348)
Q Consensus 159 ~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~ 238 (348)
.+++||+.++|+.|+++|++++|+||+ ....++.+++++ +.. + .+++++ ..+.|+.+.
T Consensus 73 -~~l~pG~~e~l~~l~~~g~~~~IvS~~---~~~~i~~il~~~-~~~--~-~i~~n~--------~~~~~~~~~------ 130 (219)
T PRK09552 73 -AEIREGFHEFVQFVKENNIPFYVVSGG---MDFFVYPLLQGL-IPK--E-QIYCNG--------SDFSGEYIT------ 130 (219)
T ss_pred -CCcCcCHHHHHHHHHHcCCeEEEECCC---cHHHHHHHHHHh-CCc--C-cEEEeE--------EEecCCeeE------
Confidence 689999999999999999999999996 578899999987 643 1 111111 111222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccCC-CCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcE
Q 018946 239 LATEARKAVSAQKQEIAEEVASMLKLSVDIDT-SSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPC 317 (348)
Q Consensus 239 ~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~-~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~ 317 (348)
..||+|.... +...... ...++++++..+.+|+||||+.+|+.+|+++|+.+
T Consensus 131 ----------------------~~kp~p~~~~~~~~~~~~-----K~~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~ 183 (219)
T PRK09552 131 ----------------------ITWPHPCDEHCQNHCGCC-----KPSLIRKLSDTNDFHIVIGDSITDLEAAKQADKVF 183 (219)
T ss_pred ----------------------EeccCCccccccccCCCc-----hHHHHHHhccCCCCEEEEeCCHHHHHHHHHCCcce
Confidence 1288877510 0000000 23567888999999999999999999999999954
Q ss_pred E
Q 018946 318 V 318 (348)
Q Consensus 318 i 318 (348)
+
T Consensus 184 a 184 (219)
T PRK09552 184 A 184 (219)
T ss_pred e
Confidence 4
No 55
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.69 E-value=1.3e-16 Score=134.47 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=81.7
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCC-----chHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCc
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSG-----DRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGV 235 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~-----~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~ 235 (348)
.++||+.++|+.|+++|++++|+||+.... ...+..+++++|+..++. +++. .
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~~~~--~------------------ 82 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPIDVL--YACP--H------------------ 82 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEEEE--EECC--C------------------
Confidence 478999999999999999999999952000 466888899999863322 1111 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHc-CCCCCcEEEEec-CHhhHHHHHHc
Q 018946 236 DEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYA-EKPVRNCFLIAG-SQSGVAGAQRI 313 (348)
Q Consensus 236 ~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~l-gv~p~~~i~VGD-s~~Di~aA~~a 313 (348)
..||+|++ |+.+++++ +++|++|+|||| +..|+.+|+++
T Consensus 83 -------------------------~~KP~~~~--------------~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~ 123 (132)
T TIGR01662 83 -------------------------CRKPKPGM--------------FLEALKRFNEIDPEESVYVGDQDLTDLQAAKRA 123 (132)
T ss_pred -------------------------CCCCChHH--------------HHHHHHHcCCCChhheEEEcCCCcccHHHHHHC
Confidence 12999999 99999999 599999999999 79999999999
Q ss_pred CCcEEEEC
Q 018946 314 GMPCVVMR 321 (348)
Q Consensus 314 G~~~i~v~ 321 (348)
|+.+|+++
T Consensus 124 Gi~~i~~~ 131 (132)
T TIGR01662 124 GLAFILVA 131 (132)
T ss_pred CCeEEEee
Confidence 99999985
No 56
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.68 E-value=1.7e-17 Score=147.71 Aligned_cols=108 Identities=12% Similarity=0.018 Sum_probs=89.1
Q ss_pred CCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCc---------ccchheeecchhhhhhhcccccccc
Q 018946 159 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE---------RISKIKIVGNEEVERSLYGQFVLGK 229 (348)
Q Consensus 159 ~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~---------~~f~~~i~~~~e~~~~~~~~~v~g~ 229 (348)
..+++||+.++|+.|+++|++++|+||. .....++.+++.+|+. ++|+.++.+.+ ..
T Consensus 43 ~~~l~pGv~elL~~Lk~~G~~l~I~Sn~--~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~-~~----------- 108 (174)
T TIGR01685 43 EVTLIKEVRDVLQTLKDAGTYLATASWN--DVPEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYK-PN----------- 108 (174)
T ss_pred EEEEcccHHHHHHHHHHCCCEEEEEeCC--CChHHHHHHHHhCCcCCCCCcccHHHhceeeeeccC-Cc-----------
Confidence 4678999999999999999999999984 1568889999999998 88877654321 10
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHc--CCCCCcEEEEecCHhhH
Q 018946 230 GISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYA--EKPVRNCFLIAGSQSGV 307 (348)
Q Consensus 230 ~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~l--gv~p~~~i~VGDs~~Di 307 (348)
..||.+++ ++.+.+.+ |++|++|+||||+..|+
T Consensus 109 -------------------------------~~kp~~~i--------------~~~~~~~~~~gl~p~e~l~VgDs~~di 143 (174)
T TIGR01685 109 -------------------------------KAKQLEMI--------------LQKVNKVDPSVLKPAQILFFDDRTDNV 143 (174)
T ss_pred -------------------------------hHHHHHHH--------------HHHhhhcccCCCCHHHeEEEcChhHhH
Confidence 01666666 77777777 89999999999999999
Q ss_pred HHHHHcCCcEEEECCCCC
Q 018946 308 AGAQRIGMPCVVMRSRCI 325 (348)
Q Consensus 308 ~aA~~aG~~~i~v~~~~~ 325 (348)
.+|+++|+.++++.++..
T Consensus 144 ~aA~~aGi~~i~v~~g~~ 161 (174)
T TIGR01685 144 REVWGYGVTSCYCPSGMD 161 (174)
T ss_pred HHHHHhCCEEEEcCCCcc
Confidence 999999999999987653
No 57
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.67 E-value=1.3e-15 Score=141.87 Aligned_cols=159 Identities=9% Similarity=0.111 Sum_probs=107.1
Q ss_pred eEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHHhhHHHHHHHHHhcCCCCCCC
Q 018946 85 LAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRKNALDEFLASKDAPLRP 164 (348)
Q Consensus 85 kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 164 (348)
-+|+||+||||+|+... . .+|.+. ++...+..+.+. ... ..|.+.. .....+.+
T Consensus 64 ~aViFDlDgTLlDSs~~-~---------~~G~~~--~s~~~~~~l~g~------~~w-------~~~~~~~-~~~s~p~~ 117 (237)
T TIGR01672 64 IAVSFDIDDTVLFSSPG-F---------WRGKKT--FSPGSEDYLKNQ------VFW-------EKVNNGW-DEFSIPKE 117 (237)
T ss_pred eEEEEeCCCccccCcHH-H---------hCCccc--CCHHHhhhhcCh------HHH-------HHHHHhc-ccCCcchh
Confidence 39999999999999874 2 267763 444433333221 111 2233322 22345677
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCCCC-CchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHHHHH
Q 018946 165 GVEDFVDDAYNEGIPLIVLTAYGKS-GDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATEA 243 (348)
Q Consensus 165 Gv~elL~~Lk~~Gi~vaIvTn~~~~-~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~~~~ 243 (348)
++.++|+.++++|++++++||...+ .+..+..+++.+|+.++|+.+ ++++....
T Consensus 118 ~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~~f~~i-~~~d~~~~------------------------ 172 (237)
T TIGR01672 118 VARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPAMNPVI-FAGDKPGQ------------------------ 172 (237)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCchheeEE-ECCCCCCC------------------------
Confidence 7999999999999999999996321 456888899999999888654 33222110
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEECCC
Q 018946 244 RKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSR 323 (348)
Q Consensus 244 ~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~~~ 323 (348)
.||++ . .+++++++ ++||||+.+|+.+|+++|+.+|.|.++
T Consensus 173 ------------------~Kp~~----------------~-~~l~~~~i----~i~vGDs~~DI~aAk~AGi~~I~V~~g 213 (237)
T TIGR01672 173 ------------------YQYTK----------------T-QWIQDKNI----RIHYGDSDNDITAAKEAGARGIRILRA 213 (237)
T ss_pred ------------------CCCCH----------------H-HHHHhCCC----eEEEeCCHHHHHHHHHCCCCEEEEEec
Confidence 04432 2 23456665 799999999999999999999999887
Q ss_pred CCCcc-ccccc
Q 018946 324 CITTL-PVSKT 333 (348)
Q Consensus 324 ~~~~~-~l~~~ 333 (348)
.++.- .++..
T Consensus 214 ~~s~~~~~~~~ 224 (237)
T TIGR01672 214 SNSTYKPLPQA 224 (237)
T ss_pred CCCCCCCcccc
Confidence 76543 45443
No 58
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.66 E-value=1.6e-15 Score=136.70 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=103.2
Q ss_pred ceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCC----CHHHHHHHHhcccCcHHHHHHHH--hhHHHHHHHHHhc
Q 018946 84 DLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANW----TAPIYTDLLRKSAGDEDRMLVLF--FNRKNALDEFLAS 157 (348)
Q Consensus 84 ~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~----~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 157 (348)
+++|+|||||||++ ..|..+++++|++. .+ ....+...++. ++.... ....+.+...+.
T Consensus 1 ~~~v~FD~DGTL~~-------~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~i~~~~~- 65 (205)
T PRK13582 1 MEIVCLDLEGVLVP-------EIWIAFAEKTGIPE-LRATTRDIPDYDVLMKQ------RLDILDEHGLGLADIQEVIA- 65 (205)
T ss_pred CeEEEEeCCCCChh-------hHHHHHHHHcCChH-HHHHhcCCCCHHHHHHH------HHHHHHHcCCCHHHHHHHHH-
Confidence 46899999999993 35667777888752 00 00112222221 111111 001233444443
Q ss_pred CCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchh
Q 018946 158 KDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDE 237 (348)
Q Consensus 158 ~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~ 237 (348)
..+++||+.++|+.|+++ ++++|+||+ ....++.+++++|+..+|...+...++. ++.|..
T Consensus 66 -~~~~~pg~~e~L~~L~~~-~~~~IvS~~---~~~~~~~~l~~~gl~~~f~~~~~~~~~~-------~i~~~~------- 126 (205)
T PRK13582 66 -TLDPLPGAVEFLDWLRER-FQVVILSDT---FYEFAGPLMRQLGWPTLFCHSLEVDEDG-------MITGYD------- 126 (205)
T ss_pred -hCCCCCCHHHHHHHHHhc-CCEEEEeCC---cHHHHHHHHHHcCCchhhcceEEECCCC-------eEECcc-------
Confidence 367899999999999999 999999995 6789999999999998886543322111 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcE
Q 018946 238 QLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPC 317 (348)
Q Consensus 238 ~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~ 317 (348)
+|.|+. ...++++++..+++|+||||+.+|+.+++.+|+.+
T Consensus 127 -------------------------~~~p~~--------------k~~~l~~~~~~~~~~v~iGDs~~D~~~~~aa~~~v 167 (205)
T PRK13582 127 -------------------------LRQPDG--------------KRQAVKALKSLGYRVIAAGDSYNDTTMLGEADAGI 167 (205)
T ss_pred -------------------------ccccch--------------HHHHHHHHHHhCCeEEEEeCCHHHHHHHHhCCCCE
Confidence 122222 23444556666789999999999999999999965
Q ss_pred E
Q 018946 318 V 318 (348)
Q Consensus 318 i 318 (348)
.
T Consensus 168 ~ 168 (205)
T PRK13582 168 L 168 (205)
T ss_pred E
Confidence 4
No 59
>PRK06769 hypothetical protein; Validated
Probab=99.66 E-value=3.2e-16 Score=139.24 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=84.1
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCC-----CchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCC
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKS-----GDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSG 234 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~-----~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~ 234 (348)
..++||+.++|+.|+++|++++|+||...- ........++.+|++.++.......++ +.
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~--------------~~-- 90 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKHGDG--------------CE-- 90 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCCCCC--------------CC--
Confidence 357999999999999999999999995210 001133346677776654322111111 11
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcC
Q 018946 235 VDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIG 314 (348)
Q Consensus 235 ~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG 314 (348)
.+||+|++ |+.++++++++|++|+||||+..|+.+|+++|
T Consensus 91 --------------------------~~KP~p~~--------------~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aG 130 (173)
T PRK06769 91 --------------------------CRKPSTGM--------------LLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVN 130 (173)
T ss_pred --------------------------CCCCCHHH--------------HHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCC
Confidence 23999999 99999999999999999999999999999999
Q ss_pred CcEEEECCCCCC
Q 018946 315 MPCVVMRSRCIT 326 (348)
Q Consensus 315 ~~~i~v~~~~~~ 326 (348)
|.+|++.++...
T Consensus 131 i~~i~v~~g~~~ 142 (173)
T PRK06769 131 ATTILVRTGAGY 142 (173)
T ss_pred CeEEEEecCCCc
Confidence 999999987644
No 60
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.61 E-value=1.8e-14 Score=127.33 Aligned_cols=176 Identities=18% Similarity=0.150 Sum_probs=101.7
Q ss_pred EEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHH-HHhhH----HHHHHHHHhcCCC
Q 018946 86 AVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLV-LFFNR----KNALDEFLASKDA 160 (348)
Q Consensus 86 aviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~ 160 (348)
+||||+||||++.+.. ..+++.++.+ .| ...+................ ..... ...+.+++.. .
T Consensus 3 ~iiFD~dgTL~~~~~~------~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 71 (188)
T TIGR01489 3 VVVSDFDGTITLNDSD------DWITDKFGPP--EA-NRLLDGVLSKTLSIKFMDRRMKGLLPSGLKEDEILEVLKS--A 71 (188)
T ss_pred EEEEeCCCcccCCCch------HHHHHhcCcc--hh-hHHHHHHhhcCCchHHHHHHHHHHhhcCCCHHHHHHHHHh--C
Confidence 7999999999998764 2344444432 22 22222222211111110000 00000 2234444433 6
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHH
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLA 240 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~ 240 (348)
+++||+.++|+.|+++|++++|+||+ ....++.+++.+|+..+|+.++ +++....+ .++..+..-
T Consensus 72 ~l~~g~~~ll~~l~~~g~~~~i~S~~---~~~~~~~~l~~~~l~~~f~~i~-~~~~~~~~--~g~~~~~~~--------- 136 (188)
T TIGR01489 72 PIDPGFKEFIAFIKEHGIDFIVISDG---NDFFIDPVLEGIGEKDVFIEIY-SNPASFDN--DGRHIVWPH--------- 136 (188)
T ss_pred CCCccHHHHHHHHHHcCCcEEEEeCC---cHHHHHHHHHHcCChhheeEEe-ccCceECC--CCcEEEecC---------
Confidence 89999999999999999999999996 5688899999999999998654 43322110 011111000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCc--hhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcE
Q 018946 241 TEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPE--SLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPC 317 (348)
Q Consensus 241 ~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~--~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~ 317 (348)
+ .... .+.+. .++++ ++.+.+.. +++++||||+.+|+.+|+++++.+
T Consensus 137 ----------------------~-~~~~-~~~~~g~~K~~~---~~~~~~~~---~~~~i~iGD~~~D~~aa~~~d~~~ 185 (188)
T TIGR01489 137 ----------------------H-CHGC-CSCPCGCCKGKV---IHKLSEPK---YQHIIYIGDGVTDVCPAKLSDVVF 185 (188)
T ss_pred ----------------------C-CCcc-CcCCCCCCHHHH---HHHHHhhc---CceEEEECCCcchhchHhcCCccc
Confidence 0 0000 00011 12223 55554544 899999999999999999997644
No 61
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.60 E-value=3.5e-15 Score=131.91 Aligned_cols=99 Identities=13% Similarity=0.172 Sum_probs=78.2
Q ss_pred CCCcHHHHHHHHHHCCCcEEEEeCCCCCC---------chHHHHHHHHcCCcccchheeecchhhhhhhccccccccccc
Q 018946 162 LRPGVEDFVDDAYNEGIPLIVLTAYGKSG---------DRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGIS 232 (348)
Q Consensus 162 l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~---------~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~ 232 (348)
++||+.++|+.|+++|++++|+||..... ...+..+++.+|+.. +.++.+. +..
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~~--~~ii~~~-~~~-------------- 105 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPI--QVLAATH-AGL-------------- 105 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCCE--EEEEecC-CCC--------------
Confidence 68999999999999999999999963100 024678899999853 2222222 110
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcC--CCCCcEEEEecCH------
Q 018946 233 SGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAE--KPVRNCFLIAGSQ------ 304 (348)
Q Consensus 233 ~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lg--v~p~~~i~VGDs~------ 304 (348)
.+||+|++ |+.+++++| +++++|+||||+.
T Consensus 106 ----------------------------~~KP~p~~--------------~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~ 143 (166)
T TIGR01664 106 ----------------------------YRKPMTGM--------------WEYLQSQYNSPIKMTRSFYVGDAAGRKLDF 143 (166)
T ss_pred ----------------------------CCCCccHH--------------HHHHHHHcCCCCCchhcEEEECCCCCCCCC
Confidence 13999999 999999999 9999999999986
Q ss_pred --hhHHHHHHcCCcEEE
Q 018946 305 --SGVAGAQRIGMPCVV 319 (348)
Q Consensus 305 --~Di~aA~~aG~~~i~ 319 (348)
.|+++|+++|+++++
T Consensus 144 ~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 144 SDADIKFAKNLGLEFKY 160 (166)
T ss_pred chhHHHHHHHCCCCcCC
Confidence 699999999999865
No 62
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.58 E-value=5.1e-14 Score=129.24 Aligned_cols=180 Identities=17% Similarity=0.216 Sum_probs=121.1
Q ss_pred CCceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcH--HHHH-----HHHhhHHHHHHHH
Q 018946 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDE--DRML-----VLFFNRKNALDEF 154 (348)
Q Consensus 82 ~~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~--~~~~-----~~~~~~~~~~~~~ 154 (348)
+..++++|||||||++. ..|..+....|.. ............+.. .... ...........+.
T Consensus 3 ~~~~L~vFD~D~TLi~~------~~~~~~~~~~g~~-----~~v~~~t~~~~~~~~~~~~~~~~~v~~l~g~~~~~v~~~ 71 (212)
T COG0560 3 RMKKLAVFDLDGTLINA------ELIDELARGAGVG-----EEVLAITERAMRGELDFEESLRLRVALLKGLPVEVLEEV 71 (212)
T ss_pred CccceEEEecccchhhH------HHHHHHHHHhCCH-----HHHHHHHHHHhcccccHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35679999999999992 4556666666653 111111111111111 1111 0001113444444
Q ss_pred HhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCC
Q 018946 155 LASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSG 234 (348)
Q Consensus 155 ~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~ 234 (348)
..+- .++.||+.++++.++++|++++|+|++ +...++.+.+.+|++..+...+...+ + .+++-+.|..+..
T Consensus 72 ~~~~-~~l~~ga~elv~~lk~~G~~v~iiSgg---~~~lv~~ia~~lg~d~~~an~l~~~d-G---~ltG~v~g~~~~~- 142 (212)
T COG0560 72 REEF-LRLTPGAEELVAALKAAGAKVVIISGG---FTFLVEPIAERLGIDYVVANELEIDD-G---KLTGRVVGPICDG- 142 (212)
T ss_pred HHhc-CcCCccHHHHHHHHHHCCCEEEEEcCC---hHHHHHHHHHHhCCchheeeEEEEeC-C---EEeceeeeeecCc-
Confidence 4332 688999999999999999999999995 88999999999999998877654433 1 3445444443321
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcC
Q 018946 235 VDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIG 314 (348)
Q Consensus 235 ~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG 314 (348)
+....+++..++.+|+++++++++|||.||+.+...+|
T Consensus 143 ------------------------------------------~~K~~~l~~~~~~~g~~~~~~~a~gDs~nDlpml~~ag 180 (212)
T COG0560 143 ------------------------------------------EGKAKALRELAAELGIPLEETVAYGDSANDLPMLEAAG 180 (212)
T ss_pred ------------------------------------------chHHHHHHHHHHHcCCCHHHeEEEcCchhhHHHHHhCC
Confidence 11112288899999999999999999999999999999
Q ss_pred CcEEEECCC
Q 018946 315 MPCVVMRSR 323 (348)
Q Consensus 315 ~~~i~v~~~ 323 (348)
.+.++-+.+
T Consensus 181 ~~ia~n~~~ 189 (212)
T COG0560 181 LPIAVNPKP 189 (212)
T ss_pred CCeEeCcCH
Confidence 998877653
No 63
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.58 E-value=2.3e-14 Score=131.02 Aligned_cols=176 Identities=17% Similarity=0.215 Sum_probs=102.3
Q ss_pred EEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHH----hhHHHHHHHHHhcCCCCC
Q 018946 87 VLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLF----FNRKNALDEFLASKDAPL 162 (348)
Q Consensus 87 viFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l 162 (348)
|+||+||||++.+.. ..+++.++.+ .| .+....++.....-.+.+...+ ....+...+++.. ..++
T Consensus 2 ~~fDFDgTit~~d~~------~~~~~~~~~~--~~-~~~~~~~~~g~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~l 71 (214)
T TIGR03333 2 IICDFDGTITNNDNI------ISIMKQFAPP--EW-EALKDGVLSKTLSIQEGVGRMFGLLPSSLKEEITSFVLE-TAEI 71 (214)
T ss_pred EEeccCCCCCcchhH------HHHHHHhCcH--HH-HHHHHHHHcCCccHHHHHHHHHhhCCCchHHHHHHHHHh-cCcc
Confidence 799999999987754 2333333322 12 2222222221111122221110 0112355555443 3689
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHHHH
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATE 242 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~~~ 242 (348)
+||+.++|+.|+++|++++|+|++ ....++.+++.++....+ ++++. .+.+..+.
T Consensus 72 ~pg~~e~l~~l~~~g~~~~IvS~~---~~~~i~~il~~~~~~~~i----~~n~~--------~~~~~~~~---------- 126 (214)
T TIGR03333 72 REGFREFVAFINEHGIPFYVISGG---MDFFVYPLLEGIVEKDRI----YCNEA--------DFSNEYIH---------- 126 (214)
T ss_pred cccHHHHHHHHHHCCCeEEEECCC---cHHHHHHHHHhhCCcccE----Eecee--------EeeCCeeE----------
Confidence 999999999999999999999995 678888899887543222 11110 11111111
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccCCC-CCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEEC
Q 018946 243 ARKAVSAQKQEIAEEVASMLKLSVDIDTS-SPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 321 (348)
Q Consensus 243 ~~k~~~~~~~~i~~~~~~~~KP~p~i~~~-~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~ 321 (348)
..||+|..+.. ......| ..++++++..+++|+||||+.+|+.+|+.+|+ +..+
T Consensus 127 ------------------~~~p~~~~~~~~~~cg~~K-----~~~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~--~~ar 181 (214)
T TIGR03333 127 ------------------IDWPHPCDGTCQNQCGCCK-----PSLIRKLSEPNDYHIVIGDSVTDVEAAKQSDL--CFAR 181 (214)
T ss_pred ------------------EeCCCCCccccccCCCCCH-----HHHHHHHhhcCCcEEEEeCCHHHHHHHHhCCe--eEeh
Confidence 12788777321 0111111 24456666788999999999999999999999 4444
Q ss_pred C
Q 018946 322 S 322 (348)
Q Consensus 322 ~ 322 (348)
+
T Consensus 182 ~ 182 (214)
T TIGR03333 182 D 182 (214)
T ss_pred H
Confidence 3
No 64
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.58 E-value=1.9e-14 Score=118.46 Aligned_cols=118 Identities=19% Similarity=0.153 Sum_probs=89.2
Q ss_pred CCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhH
Q 018946 159 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 238 (348)
Q Consensus 159 ~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~ 238 (348)
...++||+.++|+.|+++|++++|+||+ ....++..++.+|+..+++.++.......... ......
T Consensus 22 ~~~~~~~~~~~l~~l~~~g~~i~ivS~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~------ 87 (139)
T cd01427 22 ELELYPGVKEALKELKEKGIKLALATNK---SRREVLELLEELGLDDYFDPVITSNGAAIYYP-----KEGLFL------ 87 (139)
T ss_pred cCCcCcCHHHHHHHHHHCCCeEEEEeCc---hHHHHHHHHHHcCCchhhhheeccchhhhhcc-----cccccc------
Confidence 4678999999999999999999999995 57889999999999877776543332211100 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEE
Q 018946 239 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 318 (348)
Q Consensus 239 ~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i 318 (348)
-......+||.+.. +..+++.++..++++++|||+.+|+.+++++|+.++
T Consensus 88 ----------------~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i 137 (139)
T cd01427 88 ----------------GGGPFDIGKPNPDK--------------LLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGV 137 (139)
T ss_pred ----------------cccccccCCCCHHH--------------HHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCcee
Confidence 00111234888888 999999999999999999999999999999999998
Q ss_pred EE
Q 018946 319 VM 320 (348)
Q Consensus 319 ~v 320 (348)
+|
T Consensus 138 ~v 139 (139)
T cd01427 138 AV 139 (139)
T ss_pred eC
Confidence 75
No 65
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.55 E-value=1.2e-14 Score=128.01 Aligned_cols=107 Identities=9% Similarity=0.113 Sum_probs=87.3
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCC------------CchHHHHHHHHcCCcccchheeec----chhhhhhhcc
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKS------------GDRIARSVVEKLGSERISKIKIVG----NEEVERSLYG 223 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~------------~~~~~~~il~~lgl~~~f~~~i~~----~~e~~~~~~~ 223 (348)
+.++||+.++|+.|+++|++++|+||...- ....+..+++.+|+. |+.++++ .++.
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~--fd~ii~~~~~~~~~~------ 99 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII--FDDVLICPHFPDDNC------ 99 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc--eeEEEECCCCCCCCC------
Confidence 468999999999999999999999994200 134677788999996 6544443 1211
Q ss_pred cccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecC
Q 018946 224 QFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGS 303 (348)
Q Consensus 224 ~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs 303 (348)
..+||+|++ |+.++++++++|++|+||||+
T Consensus 100 ------------------------------------~~~KP~~~~--------------~~~~~~~~~~~~~e~l~IGD~ 129 (161)
T TIGR01261 100 ------------------------------------DCRKPKIKL--------------LEPYLKKNLIDKARSYVIGDR 129 (161)
T ss_pred ------------------------------------CCCCCCHHH--------------HHHHHHHcCCCHHHeEEEeCC
Confidence 124999999 999999999999999999999
Q ss_pred HhhHHHHHHcCCcEEEECCCC
Q 018946 304 QSGVAGAQRIGMPCVVMRSRC 324 (348)
Q Consensus 304 ~~Di~aA~~aG~~~i~v~~~~ 324 (348)
.+|+.+|+++||++|++.++.
T Consensus 130 ~~Di~~A~~aGi~~i~~~~~~ 150 (161)
T TIGR01261 130 ETDMQLAENLGIRGIQYDEEE 150 (161)
T ss_pred HHHHHHHHHCCCeEEEEChhh
Confidence 999999999999999998643
No 66
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.54 E-value=6.1e-14 Score=126.10 Aligned_cols=114 Identities=18% Similarity=0.262 Sum_probs=83.1
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHH
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQL 239 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~ 239 (348)
..++||+.++|+.++++|++++|+|++ +...++.+++.+|++++|...+...++ +.+ +|
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s---~~~~v~~~~~~lg~~~~~~~~l~~~~~---g~~----~g----------- 144 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSAS---LTILVKPLARILGIDNAIGTRLEESED---GIY----TG----------- 144 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCC---cHHHHHHHHHHcCCcceEecceEEcCC---CEE----eC-----------
Confidence 358999999999999999999999995 789999999999998877653322111 011 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEE
Q 018946 240 ATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVV 319 (348)
Q Consensus 240 ~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~ 319 (348)
|+.... ...+.+ +.+++..+++.++++++|++||||.+|+.+++.+|.++++
T Consensus 145 -----------------------~~~~~~--~~g~~K---~~~l~~~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v 196 (202)
T TIGR01490 145 -----------------------NIDGNN--CKGEGK---VHALAELLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVV 196 (202)
T ss_pred -----------------------CccCCC--CCChHH---HHHHHHHHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEe
Confidence 111000 001111 1227788889999999999999999999999999999877
Q ss_pred ECC
Q 018946 320 MRS 322 (348)
Q Consensus 320 v~~ 322 (348)
.++
T Consensus 197 ~~~ 199 (202)
T TIGR01490 197 NPD 199 (202)
T ss_pred CCC
Confidence 654
No 67
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.54 E-value=1.2e-14 Score=138.25 Aligned_cols=72 Identities=14% Similarity=0.106 Sum_probs=60.7
Q ss_pred cCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCcEEEECCCCCCccccccc------c
Q 018946 262 LKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPCVVMRSRCITTLPVSKT------Q 334 (348)
Q Consensus 262 ~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~-~Di~aA~~aG~~~i~v~~~~~~~~~l~~~------~ 334 (348)
+||+|.+ |+.+++++|++|++|+||||+. .||.+|+++||++|+|.++....+++... .
T Consensus 201 gKP~p~~--------------~~~~~~~~~~~~~~~lmIGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l~~~~~~~~~~ 266 (279)
T TIGR01452 201 GKPSPYM--------------FECITENFSIDPARTLMVGDRLETDILFGHRCGMTTVLVLSGVSRLEEAQEYLAAGQHD 266 (279)
T ss_pred CCCCHHH--------------HHHHHHHhCCChhhEEEECCChHHHHHHHHHcCCcEEEECCCCCCHHHHHhhhcccccC
Confidence 4999999 9999999999999999999995 99999999999999999998876665531 2
Q ss_pred cchhHHHHhhccc
Q 018946 335 RLADMLCRILKSI 347 (348)
Q Consensus 335 ~~~d~l~~~l~~i 347 (348)
..+|++++.+.++
T Consensus 267 ~~Pd~~~~~l~~l 279 (279)
T TIGR01452 267 LVPDYVVESLADL 279 (279)
T ss_pred CCCCEEecccccC
Confidence 2477777776654
No 68
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.53 E-value=1.1e-13 Score=121.39 Aligned_cols=111 Identities=20% Similarity=0.289 Sum_probs=77.4
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccC
Q 018946 154 FLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISS 233 (348)
Q Consensus 154 ~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~ 233 (348)
++.. .++++||+.++++.++++|++++|+|++ ....++.+++.+|+..++...+...+++ .+.|...
T Consensus 67 ~~~~-~~~~~~g~~~~l~~l~~~g~~~~ivS~~---~~~~i~~~~~~~g~~~~~~~~~~~~~~g-------~~~g~~~-- 133 (177)
T TIGR01488 67 FLAR-QVALRPGARELISWLKERGIDTVIVSGG---FDFFVEPVAEKLGIDDVFANRLEFDDNG-------LLTGPIE-- 133 (177)
T ss_pred HHHh-cCCcCcCHHHHHHHHHHCCCEEEEECCC---cHHHHHHHHHHcCCchheeeeEEECCCC-------EEeCccC--
Confidence 4433 3678999999999999999999999995 6789999999999987776554322111 1111100
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 018946 234 GVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRI 313 (348)
Q Consensus 234 ~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~a 313 (348)
+ ||.+ ..+.+... ++..++.++++++++++|||+.+|+.+++.+
T Consensus 134 ~----------------------------~~~~-----~~~~K~~~---l~~~~~~~~~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 134 G----------------------------QVNP-----EGECKGKV---LKELLEESKITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred C----------------------------cccC-----CcchHHHH---HHHHHHHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence 0 1110 11222222 6677788899999999999999999998764
No 69
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.53 E-value=1.9e-13 Score=123.72 Aligned_cols=185 Identities=16% Similarity=0.160 Sum_probs=123.6
Q ss_pred CCCCceEEEEecCCccccccccC---hHHHHHHHH-HHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHHhhH----HHHH
Q 018946 80 NPPRDLAVLLEVDGVLVDAYRFG---NRQAFNVAF-QKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNR----KNAL 151 (348)
Q Consensus 80 ~~~~~kaviFDvDGTL~d~~~~~---~~~a~~~~~-~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~ 151 (348)
+.+.+++++||+|.||.....-. .++.+.+.| .++|++...- +.....+.... ...|..+.... ...|
T Consensus 11 ~~~~~~~l~FDiDdtLYp~St~i~~~~~~nI~~f~~eklgi~~e~a-~~L~~~~yk~Y---G~t~aGL~~~~~~~d~deY 86 (244)
T KOG3109|consen 11 SGPNYKCLFFDIDDTLYPLSTGIQLMMRNNIQEFFVEKLGISEEEA-EELRESLYKEY---GLTMAGLKAVGYIFDADEY 86 (244)
T ss_pred CCccceEEEEecccccccCchhHHHHHHHHHHHHHHHHhCCChhhh-HHHHHHHHHHH---hHHHHHHHHhcccCCHHHH
Confidence 34478899999999999854321 223334554 4578863111 11111111111 11111111100 3455
Q ss_pred HHHHhc----CCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccc
Q 018946 152 DEFLAS----KDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVL 227 (348)
Q Consensus 152 ~~~~~~----~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~ 227 (348)
.+++.. ..+.+-|-.+++|-.|++++ ..+.||+ ...-+.++++++|++++|+.+++..- . . +
T Consensus 87 ~~~V~~~LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa---~k~HA~r~Lk~LGieDcFegii~~e~-~-n-------p 152 (244)
T KOG3109|consen 87 HRFVHGRLPLQDLKPDPVLRNLLLSLKKRR--KWIFTNA---YKVHAIRILKKLGIEDCFEGIICFET-L-N-------P 152 (244)
T ss_pred HHHhhccCcHhhcCCCHHHHHHHHhCcccc--EEEecCC---cHHHHHHHHHHhChHHhccceeEeec-c-C-------C
Confidence 555542 23667888999999999975 8999997 56889999999999999998754321 0 0 0
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCC-CCcEEEEecCHhh
Q 018946 228 GKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKP-VRNCFLIAGSQSG 306 (348)
Q Consensus 228 g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~-p~~~i~VGDs~~D 306 (348)
-+... +-||++.. |+.+.+..|++ |.+++||+||..+
T Consensus 153 ~~~~~----------------------------vcKP~~~a--------------fE~a~k~agi~~p~~t~FfDDS~~N 190 (244)
T KOG3109|consen 153 IEKTV----------------------------VCKPSEEA--------------FEKAMKVAGIDSPRNTYFFDDSERN 190 (244)
T ss_pred CCCce----------------------------eecCCHHH--------------HHHHHHHhCCCCcCceEEEcCchhh
Confidence 00111 12999999 99999999998 9999999999999
Q ss_pred HHHHHHcCCcEEEECCCC
Q 018946 307 VAGAQRIGMPCVVMRSRC 324 (348)
Q Consensus 307 i~aA~~aG~~~i~v~~~~ 324 (348)
|++|++.||.++++....
T Consensus 191 I~~ak~vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 191 IQTAKEVGLKTVLVGREH 208 (244)
T ss_pred HHHHHhccceeEEEEeee
Confidence 999999999999987544
No 70
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.53 E-value=3.2e-13 Score=123.15 Aligned_cols=168 Identities=15% Similarity=0.093 Sum_probs=104.8
Q ss_pred eEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhccc---CcHHHHHHHH--hhHHHHHHHHHhcCC
Q 018946 85 LAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSA---GDEDRMLVLF--FNRKNALDEFLASKD 159 (348)
Q Consensus 85 kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~ 159 (348)
..++|||||||++. .|.+.....|+.. .... ..+... ....++..+. ......+++++. .
T Consensus 2 ~la~FDlD~TLi~~-------~w~~~~~~~g~~~----~~~~--~~~~~~~~~~~~~r~~ll~~~g~~~~~i~~~~~--~ 66 (203)
T TIGR02137 2 EIACLDLEGVLVPE-------IWIAFAEKTGIDA----LKAT--TRDIPDYDVLMKQRLRILDEHGLKLGDIQEVIA--T 66 (203)
T ss_pred eEEEEeCCcccHHH-------HHHHHHHHcCCcH----HHHH--hcCCcCHHHHHHHHHHHHHHCCCCHHHHHHHHH--h
Confidence 46899999999964 4778888888641 1110 000000 0001111111 111345566654 3
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHH
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQL 239 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~ 239 (348)
++++||+.++|+.+++.| +++|+|++ +...+..+++.+|++.+|...+...+. +.++|.....
T Consensus 67 i~l~pga~ell~~lk~~~-~~~IVS~~---~~~~~~~il~~lgi~~~~an~l~~~~~-------g~~tG~~~~~------ 129 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERF-QVVILSDT---FYEFSQPLMRQLGFPTLLCHKLEIDDS-------DRVVGYQLRQ------ 129 (203)
T ss_pred CCCCccHHHHHHHHHhCC-eEEEEeCC---hHHHHHHHHHHcCCchhhceeeEEecC-------CeeECeeecC------
Confidence 578999999999999985 99999995 789999999999999887654322110 1122221110
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEE
Q 018946 240 ATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVV 319 (348)
Q Consensus 240 ~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~ 319 (348)
||.+. .+ ++.. ++.+ .+|++|||+.+|+.++..+|+++++
T Consensus 130 -----------------------~~~K~----------~~---l~~l-~~~~---~~~v~vGDs~nDl~ml~~Ag~~ia~ 169 (203)
T TIGR02137 130 -----------------------KDPKR----------QS---VIAF-KSLY---YRVIAAGDSYNDTTMLSEAHAGILF 169 (203)
T ss_pred -----------------------cchHH----------HH---HHHH-HhhC---CCEEEEeCCHHHHHHHHhCCCCEEe
Confidence 11111 11 2322 4455 3899999999999999999999988
Q ss_pred ECCCC
Q 018946 320 MRSRC 324 (348)
Q Consensus 320 v~~~~ 324 (348)
...+.
T Consensus 170 ~ak~~ 174 (203)
T TIGR02137 170 HAPEN 174 (203)
T ss_pred cCCHH
Confidence 77643
No 71
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.50 E-value=9.1e-14 Score=123.10 Aligned_cols=105 Identities=14% Similarity=0.220 Sum_probs=87.0
Q ss_pred CCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhH
Q 018946 159 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 238 (348)
Q Consensus 159 ~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~ 238 (348)
...++||+.++|+.|+++|++++|+||.. ....+..+++.+|+..++.
T Consensus 41 ~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~--~~~~~~~~~~~~gl~~~~~------------------------------ 88 (170)
T TIGR01668 41 HNEAYPALRDWIEELKAAGRKLLIVSNNA--GEQRAKAVEKALGIPVLPH------------------------------ 88 (170)
T ss_pred CCCcChhHHHHHHHHHHcCCEEEEEeCCc--hHHHHHHHHHHcCCEEEcC------------------------------
Confidence 35789999999999999999999999952 1455666667777643210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCcE
Q 018946 239 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPC 317 (348)
Q Consensus 239 ~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~-~Di~aA~~aG~~~ 317 (348)
..||+|++ |..+++++|+++++|+||||+. .|+.+|+++||.+
T Consensus 89 ----------------------~~KP~p~~--------------~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~ 132 (170)
T TIGR01668 89 ----------------------AVKPPGCA--------------FRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYT 132 (170)
T ss_pred ----------------------CCCCChHH--------------HHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeE
Confidence 01999999 9999999999999999999998 7999999999999
Q ss_pred EEECCCCCCccccc
Q 018946 318 VVMRSRCITTLPVS 331 (348)
Q Consensus 318 i~v~~~~~~~~~l~ 331 (348)
|+|.++....+.+.
T Consensus 133 i~v~~g~~~~~~~~ 146 (170)
T TIGR01668 133 ILVEPLVHPDQWFI 146 (170)
T ss_pred EEEccCcCCccccc
Confidence 99998887766554
No 72
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.50 E-value=3.7e-14 Score=127.38 Aligned_cols=88 Identities=18% Similarity=0.271 Sum_probs=76.0
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcc--cchheeecchhhhhhhcccccccccccCCchh
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER--ISKIKIVGNEEVERSLYGQFVLGKGISSGVDE 237 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~--~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~ 237 (348)
.+++||+.++|+.|+++|++++++|+ .....+..+.+.+|+.+ .|....
T Consensus 126 d~~~~~~~~~l~~L~~~Gi~~~i~TG---D~~~~a~~~~~~lgi~~~~v~a~~~-------------------------- 176 (215)
T PF00702_consen 126 DPLRPGAKEALQELKEAGIKVAILTG---DNESTASAIAKQLGIFDSIVFARVI-------------------------- 176 (215)
T ss_dssp EEBHTTHHHHHHHHHHTTEEEEEEES---SEHHHHHHHHHHTTSCSEEEEESHE--------------------------
T ss_pred CcchhhhhhhhhhhhccCcceeeeec---ccccccccccccccccccccccccc--------------------------
Confidence 46799999999999999999999998 46899999999999954 222110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcC
Q 018946 238 QLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIG 314 (348)
Q Consensus 238 ~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG 314 (348)
.||++.+ |..+++.+++++++|+||||+.||+.|+++||
T Consensus 177 ------------------------~kP~~k~--------------~~~~i~~l~~~~~~v~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 177 ------------------------GKPEPKI--------------FLRIIKELQVKPGEVAMVGDGVNDAPALKAAG 215 (215)
T ss_dssp ------------------------TTTHHHH--------------HHHHHHHHTCTGGGEEEEESSGGHHHHHHHSS
T ss_pred ------------------------ccccchh--------------HHHHHHHHhcCCCEEEEEccCHHHHHHHHhCc
Confidence 1788887 99999999999999999999999999999997
No 73
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.49 E-value=4.8e-14 Score=132.84 Aligned_cols=107 Identities=15% Similarity=0.099 Sum_probs=78.4
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHHHH
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATE 242 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~~~ 242 (348)
++++.+.+..|++.|++++++||..+ .........+|+..+|+.+..+.. ++.+.
T Consensus 122 y~~l~~a~~~L~~~~~~~~iatn~~~---~~~~~~~~~~g~g~~~~~i~~~~~------------~~~~~---------- 176 (257)
T TIGR01458 122 YQILNQAFRLLLDGAKPLLIAIGKGR---YYKRKDGLALDVGPFVTALEYATD------------TKATV---------- 176 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCC---CCcCCCCCCCCchHHHHHHHHHhC------------CCcee----------
Confidence 56788889999888899999998532 222333345566666553311000 00001
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCcEEEEC
Q 018946 243 ARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPCVVMR 321 (348)
Q Consensus 243 ~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~-~Di~aA~~aG~~~i~v~ 321 (348)
.+||+|++ |+.+++++|++|++|+||||+. +||.+|+++||.+|+|.
T Consensus 177 ------------------~gKP~p~~--------------~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~~G~~~i~v~ 224 (257)
T TIGR01458 177 ------------------VGKPSKTF--------------FLEALRATGCEPEEAVMIGDDCRDDVGGAQDCGMRGIQVR 224 (257)
T ss_pred ------------------ecCCCHHH--------------HHHHHHHhCCChhhEEEECCCcHHHHHHHHHcCCeEEEEC
Confidence 23999999 9999999999999999999996 89999999999999999
Q ss_pred CCCCC
Q 018946 322 SRCIT 326 (348)
Q Consensus 322 ~~~~~ 326 (348)
++...
T Consensus 225 ~G~~~ 229 (257)
T TIGR01458 225 TGKYR 229 (257)
T ss_pred CCCCC
Confidence 87643
No 74
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.47 E-value=2.5e-13 Score=129.84 Aligned_cols=111 Identities=14% Similarity=0.018 Sum_probs=89.4
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcc-cchheeecchhhhhhhcccccccccccCCchhH
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER-ISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 238 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~-~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~ 238 (348)
..++||+.++|+.|+++|++++++||. .....+..++.+++.. +|+.++ +.+..... ... .
T Consensus 186 ~~~~~~~~~~l~~l~~~g~~i~i~T~r---~~~~~~~~l~~l~~~~~~f~~i~-~~~~~~~~-----~~~--~------- 247 (300)
T PHA02530 186 DKPNPMVVELVKMYKAAGYEIIVVSGR---DGVCEEDTVEWLRQTDIWFDDLI-GRPPDMHF-----QRE--Q------- 247 (300)
T ss_pred CCCChhHHHHHHHHHhCCCEEEEEeCC---ChhhHHHHHHHHHHcCCchhhhh-CCcchhhh-----ccc--C-------
Confidence 468999999999999999999999995 6788899999999986 887653 22211100 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCC-CCCcEEEEecCHhhHHHHHHcCCcE
Q 018946 239 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEK-PVRNCFLIAGSQSGVAGAQRIGMPC 317 (348)
Q Consensus 239 ~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv-~p~~~i~VGDs~~Di~aA~~aG~~~ 317 (348)
..+||+|++ ++.++++++. ++++|+||||+..|+.+|+++||.+
T Consensus 248 ---------------------~~~kp~p~~--------------~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~ 292 (300)
T PHA02530 248 ---------------------GDKRPDDVV--------------KEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLEC 292 (300)
T ss_pred ---------------------CCCCCcHHH--------------HHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeE
Confidence 023999999 9999999988 6799999999999999999999999
Q ss_pred EEECCC
Q 018946 318 VVMRSR 323 (348)
Q Consensus 318 i~v~~~ 323 (348)
|+|.++
T Consensus 293 i~v~~g 298 (300)
T PHA02530 293 WQVAPG 298 (300)
T ss_pred EEecCC
Confidence 999764
No 75
>PRK11590 hypothetical protein; Provisional
Probab=99.46 E-value=1.4e-12 Score=119.17 Aligned_cols=180 Identities=11% Similarity=0.007 Sum_probs=111.8
Q ss_pred CceEEEEecCCccccccccChHHHHHHHH-HHcCCCCCCCCHHHHHHHHhcccCcHHHH--------HHHHh-h--H---
Q 018946 83 RDLAVLLEVDGVLVDAYRFGNRQAFNVAF-QKLGLDCANWTAPIYTDLLRKSAGDEDRM--------LVLFF-N--R--- 147 (348)
Q Consensus 83 ~~kaviFDvDGTL~d~~~~~~~~a~~~~~-~~~gl~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~-~--~--- 147 (348)
..++++||+||||++... ...|..++ .++|+.. ........+++......... .+..+ + .
T Consensus 5 ~~k~~iFD~DGTL~~~d~---~~~~~~~~~~~~g~~~--~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 79 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQDM---FGSFLRYLLRRQPLNL--LLVLPLLPVIGLGLLVKGRAARWPMSLLLWGCTFGHSEARL 79 (211)
T ss_pred cceEEEEecCCCCcccch---HHHHHHHHHHhcchhh--HHHhHHHHHhccCcccchhhhhhhHHHHHHHHHcCCCHHHH
Confidence 356999999999996553 47888877 7888652 22233333333322111110 11000 1 1
Q ss_pred ---HHHHHHHHhcCCCCCCCcHHHHH-HHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecch-hhhhhhc
Q 018946 148 ---KNALDEFLASKDAPLRPGVEDFV-DDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNE-EVERSLY 222 (348)
Q Consensus 148 ---~~~~~~~~~~~~~~l~pGv~elL-~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~-e~~~~~~ 222 (348)
.+.|.+.+... ..++||+.++| +.+++.|++++|+||+ ++..++.+++.+|+.... .+ ++.+ ++ .+
T Consensus 80 ~~~~~~f~~~~~~~-~~~~pga~e~L~~~l~~~G~~l~IvSas---~~~~~~~il~~l~~~~~~-~~-i~t~l~~---~~ 150 (211)
T PRK11590 80 QALEADFVRWFRDN-VTAFPVVQERLTTYLLSSDADVWLITGS---PQPLVEQVYFDTPWLPRV-NL-IASQMQR---RY 150 (211)
T ss_pred HHHHHHHHHHHHHh-CcCCccHHHHHHHHHHhCCCEEEEEeCC---cHHHHHHHHHHccccccC-ce-EEEEEEE---EE
Confidence 12233333322 56799999999 5788899999999994 789999999999963311 22 2332 22 24
Q ss_pred ccccccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEec
Q 018946 223 GQFVLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAG 302 (348)
Q Consensus 223 ~~~v~g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGD 302 (348)
++.+.|.. ..-+.. .+.+.++++.+...+.+.||
T Consensus 151 tg~~~g~~-------------------------------------------c~g~~K---~~~l~~~~~~~~~~~~aY~D 184 (211)
T PRK11590 151 GGWVLTLR-------------------------------------------CLGHEK---VAQLERKIGTPLRLYSGYSD 184 (211)
T ss_pred ccEECCcc-------------------------------------------CCChHH---HHHHHHHhCCCcceEEEecC
Confidence 44443332 111112 23444666777888999999
Q ss_pred CHhhHHHHHHcCCcEEEECC
Q 018946 303 SQSGVAGAQRIGMPCVVMRS 322 (348)
Q Consensus 303 s~~Di~aA~~aG~~~i~v~~ 322 (348)
|.+|+.+...+|-+.++.++
T Consensus 185 s~~D~pmL~~a~~~~~vnp~ 204 (211)
T PRK11590 185 SKQDNPLLYFCQHRWRVTPR 204 (211)
T ss_pred CcccHHHHHhCCCCEEECcc
Confidence 99999999999999887765
No 76
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.45 E-value=2.3e-13 Score=115.18 Aligned_cols=89 Identities=8% Similarity=-0.000 Sum_probs=73.0
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcC-------CcccchheeecchhhhhhhcccccccccccC
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLG-------SERISKIKIVGNEEVERSLYGQFVLGKGISS 233 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lg-------l~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~ 233 (348)
+++||+.++|+.|+++|++++|+||. +....+..+++.++ +.++|+.++.+ .
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~--~~~~~~~~~l~~~~~~~~i~~l~~~f~~~~~~---------------~---- 87 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYN--DDPHVAYELLKIFEDFGIIFPLAEYFDPLTIG---------------Y---- 87 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCC--CCHHHHHHHHHhccccccchhhHhhhhhhhhc---------------C----
Confidence 57899999999999999999999995 25678888888888 56666544221 1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcC--CCCCcEEEEecCHhhHHHHH
Q 018946 234 GVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAE--KPVRNCFLIAGSQSGVAGAQ 311 (348)
Q Consensus 234 ~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lg--v~p~~~i~VGDs~~Di~aA~ 311 (348)
.||+|++ |..+++++| +.|++|+||||+..|+....
T Consensus 88 ----------------------------~~pkp~~--------------~~~a~~~lg~~~~p~~~l~igDs~~n~~~~~ 125 (128)
T TIGR01681 88 ----------------------------WLPKSPR--------------LVEIALKLNGVLKPKSILFVDDRPDNNEEVD 125 (128)
T ss_pred ----------------------------CCcHHHH--------------HHHHHHHhcCCCCcceEEEECCCHhHHHHHH
Confidence 1677777 999999999 99999999999999988765
Q ss_pred H
Q 018946 312 R 312 (348)
Q Consensus 312 ~ 312 (348)
+
T Consensus 126 ~ 126 (128)
T TIGR01681 126 Y 126 (128)
T ss_pred h
Confidence 4
No 77
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.45 E-value=7.3e-13 Score=123.49 Aligned_cols=107 Identities=8% Similarity=0.201 Sum_probs=78.7
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCC-CchHHHHHHHHcCC--cccchheeecchhhhhhhcccccccccccCCch
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKS-GDRIARSVVEKLGS--ERISKIKIVGNEEVERSLYGQFVLGKGISSGVD 236 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~-~~~~~~~il~~lgl--~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~ 236 (348)
..+.||+.++|+.|+++|++++++||...+ .+..+..+++.+|+ .++|..++ +++.. .
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil-~gd~~----------------~-- 173 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIF-AGDKP----------------G-- 173 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEE-cCCCC----------------C--
Confidence 567899999999999999999999996321 35577777878999 78876543 22110 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCc
Q 018946 237 EQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMP 316 (348)
Q Consensus 237 ~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~ 316 (348)
||++.- +++.+++ ++||||+.+|+.+|++||+.
T Consensus 174 --------------------------K~~K~~-----------------~l~~~~i----~I~IGDs~~Di~aA~~AGi~ 206 (237)
T PRK11009 174 --------------------------QYTKTQ-----------------WLKKKNI----RIFYGDSDNDITAAREAGAR 206 (237)
T ss_pred --------------------------CCCHHH-----------------HHHhcCC----eEEEcCCHHHHHHHHHcCCc
Confidence 333221 2345665 89999999999999999999
Q ss_pred EEEECCCCCCcc-cccc
Q 018946 317 CVVMRSRCITTL-PVSK 332 (348)
Q Consensus 317 ~i~v~~~~~~~~-~l~~ 332 (348)
+|.|.++.+..- .++.
T Consensus 207 ~I~v~~G~~~~~~~~~~ 223 (237)
T PRK11009 207 GIRILRAANSTYKPLPQ 223 (237)
T ss_pred EEEEecCCCCCCCcccc
Confidence 999998877433 4444
No 78
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.45 E-value=3.6e-13 Score=132.19 Aligned_cols=109 Identities=15% Similarity=0.179 Sum_probs=82.9
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCC----CC--------CchHHHHHHHHcCCcccchheeecchhhhhhhcccccc
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYG----KS--------GDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVL 227 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~----~~--------~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~ 227 (348)
..++||+.++|+.|+++|++++|+||.. .. ....+..+++.+|+. |+.++++... .
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~--fd~i~i~~~~----------~ 96 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIK--FDEVLICPHF----------P 96 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCc--eeeEEEeCCc----------C
Confidence 5789999999999999999999999931 00 123455667777773 4444332110 0
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 018946 228 GKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGV 307 (348)
Q Consensus 228 g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di 307 (348)
.+. ...+||+|++ +..+++.++++|++++||||+.+|+
T Consensus 97 sd~----------------------------~~~rKP~p~~--------------l~~a~~~l~v~~~~svmIGDs~sDi 134 (354)
T PRK05446 97 EDN----------------------------CSCRKPKTGL--------------VEEYLAEGAIDLANSYVIGDRETDV 134 (354)
T ss_pred ccc----------------------------CCCCCCCHHH--------------HHHHHHHcCCCcccEEEEcCCHHHH
Confidence 000 1134999999 9999999999999999999999999
Q ss_pred HHHHHcCCcEEEECC
Q 018946 308 AGAQRIGMPCVVMRS 322 (348)
Q Consensus 308 ~aA~~aG~~~i~v~~ 322 (348)
.+|+++||++|+++.
T Consensus 135 ~aAk~aGi~~I~v~~ 149 (354)
T PRK05446 135 QLAENMGIKGIRYAR 149 (354)
T ss_pred HHHHHCCCeEEEEEC
Confidence 999999999999953
No 79
>PRK10444 UMP phosphatase; Provisional
Probab=99.44 E-value=1.1e-12 Score=123.16 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=61.0
Q ss_pred hcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCcEEEECCCCCCcccccccccchhH
Q 018946 261 MLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPCVVMRSRCITTLPVSKTQRLADM 339 (348)
Q Consensus 261 ~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~-~Di~aA~~aG~~~i~v~~~~~~~~~l~~~~~~~d~ 339 (348)
.+||+|++ |+.+++++++++++|+||||+. .||.+|+++|+.+++|.++....+++......+|+
T Consensus 172 ~gKP~~~~--------------~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~~~~~~pd~ 237 (248)
T PRK10444 172 VGKPSPWI--------------IRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDSMPFRPSW 237 (248)
T ss_pred cCCCCHHH--------------HHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCHHHHhcCCCCCCE
Confidence 46999999 9999999999999999999996 89999999999999999998887766543334666
Q ss_pred HHHhhccc
Q 018946 340 LCRILKSI 347 (348)
Q Consensus 340 l~~~l~~i 347 (348)
+++++.++
T Consensus 238 ~~~sl~el 245 (248)
T PRK10444 238 IYPSVADI 245 (248)
T ss_pred EECCHHHh
Confidence 66655543
No 80
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.43 E-value=1.7e-13 Score=121.53 Aligned_cols=85 Identities=15% Similarity=0.082 Sum_probs=75.5
Q ss_pred HHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHHHHHHHHHH
Q 018946 169 FVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVS 248 (348)
Q Consensus 169 lL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~~~~~k~~~ 248 (348)
.+..|+++|++++|+||. ....++..++.+|+.++|+..
T Consensus 42 ~~~~L~~~Gi~laIiT~k---~~~~~~~~l~~lgi~~~f~~~-------------------------------------- 80 (169)
T TIGR02726 42 GVIVLQLCGIDVAIITSK---KSGAVRHRAEELKIKRFHEGI-------------------------------------- 80 (169)
T ss_pred HHHHHHHCCCEEEEEECC---CcHHHHHHHHHCCCcEEEecC--------------------------------------
Confidence 567888999999999995 679999999999999887632
Q ss_pred HHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEECC
Q 018946 249 AQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRS 322 (348)
Q Consensus 249 ~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~~ 322 (348)
||+|++ ++.+++++++++++|++|||+.+|+.+++.+|+..++-+.
T Consensus 81 --------------kpkp~~--------------~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~nA 126 (169)
T TIGR02726 81 --------------KKKTEP--------------YAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVGDA 126 (169)
T ss_pred --------------CCCHHH--------------HHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEECcCc
Confidence 777788 9999999999999999999999999999999999776653
No 81
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.31 E-value=1e-11 Score=116.51 Aligned_cols=72 Identities=8% Similarity=0.109 Sum_probs=59.3
Q ss_pred hcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCcEEEECCCCCCcccccccccchhH
Q 018946 261 MLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPCVVMRSRCITTLPVSKTQRLADM 339 (348)
Q Consensus 261 ~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~-~Di~aA~~aG~~~i~v~~~~~~~~~l~~~~~~~d~ 339 (348)
.+||+|++ |+.+++++++++++++||||+. .||.+|+++||++|+|.++....+++......+|+
T Consensus 176 ~gKP~~~~--------------~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~~~~~~~~~~~~~pd~ 241 (249)
T TIGR01457 176 IGKPNAII--------------MEKAVEHLGTEREETLMVGDNYLTDIRAGIDAGIDTLLVHTGVTKAEEVAGLPIAPTH 241 (249)
T ss_pred cCCChHHH--------------HHHHHHHcCCCcccEEEECCCchhhHHHHHHcCCcEEEEcCCCCCHHHHhcCCCCCCE
Confidence 56888888 9999999999999999999997 79999999999999999988766555443334666
Q ss_pred HHHhhcc
Q 018946 340 LCRILKS 346 (348)
Q Consensus 340 l~~~l~~ 346 (348)
+++.+.+
T Consensus 242 ~v~~l~~ 248 (249)
T TIGR01457 242 VVSSLAE 248 (249)
T ss_pred EeCChhh
Confidence 6666554
No 82
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.31 E-value=6.2e-13 Score=102.04 Aligned_cols=72 Identities=15% Similarity=0.238 Sum_probs=62.7
Q ss_pred hcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecC-HhhHHHHHHcCCcEEEECCCCCCcccccccccchhH
Q 018946 261 MLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGS-QSGVAGAQRIGMPCVVMRSRCITTLPVSKTQRLADM 339 (348)
Q Consensus 261 ~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs-~~Di~aA~~aG~~~i~v~~~~~~~~~l~~~~~~~d~ 339 (348)
++||+|.+ |+.+++++++++++|+||||+ ..||.+|+++||.+|+|.++....+.+......+|+
T Consensus 2 ~gKP~p~~--------------~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~ 67 (75)
T PF13242_consen 2 CGKPSPGM--------------LEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDY 67 (75)
T ss_dssp CSTTSHHH--------------HHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSE
T ss_pred CCCCcHHH--------------HHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCE
Confidence 46999999 999999999999999999999 899999999999999999998887776544445777
Q ss_pred HHHhhcc
Q 018946 340 LCRILKS 346 (348)
Q Consensus 340 l~~~l~~ 346 (348)
+++.|.+
T Consensus 68 vv~~l~e 74 (75)
T PF13242_consen 68 VVDDLKE 74 (75)
T ss_dssp EESSGGG
T ss_pred EECCHHh
Confidence 7776665
No 83
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.27 E-value=4.7e-11 Score=113.06 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=111.7
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHH-cCCcccchheeecchhhhhhh-----------------
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEK-LGSERISKIKIVGNEEVERSL----------------- 221 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~-lgl~~~f~~~i~~~~e~~~~~----------------- 221 (348)
..+.||+.++|+.|+++|+++.++||.++.........++. ++++-..+.++.++......+
T Consensus 23 ~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~~~kv~viG~~~l 102 (269)
T COG0647 23 NEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQKPGKKVYVIGEEGL 102 (269)
T ss_pred CccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhCCCCEEEEECCcch
Confidence 46799999999999999999999999886666656666666 565433333333222111110
Q ss_pred ------cccccc--ccc-----ccCCchhHHHHHH-HHHHH---HH---------------------HHHHHHHHH----
Q 018946 222 ------YGQFVL--GKG-----ISSGVDEQLATEA-RKAVS---AQ---------------------KQEIAEEVA---- 259 (348)
Q Consensus 222 ------~~~~v~--g~~-----v~~~~~~~~~~~~-~k~~~---~~---------------------~~~i~~~~~---- 259 (348)
.+..+. .+. |.-|.++.+.-|. .++.. +. -+.|+.-+.
T Consensus 103 ~~~l~~~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI~tNpD~~~p~~~g~~pgaGai~~~~~~~tg 182 (269)
T COG0647 103 KEELEGAGFELVDEEEPARVDAVVVGLDRTLTYEKLAEALLAIAAGAPFIATNPDLTVPTERGLRPGAGAIAALLEQATG 182 (269)
T ss_pred HHHHHhCCcEEeccCCCCcccEEEEecCCCCCHHHHHHHHHHHHcCCcEEEeCCCccccCCCCCccCcHHHHHHHHHhhC
Confidence 110111 111 3334444333222 11100 00 001111110
Q ss_pred ----hhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCcEEEECCCCCCcccccccc
Q 018946 260 ----SMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPCVVMRSRCITTLPVSKTQ 334 (348)
Q Consensus 260 ----~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~-~Di~aA~~aG~~~i~v~~~~~~~~~l~~~~ 334 (348)
-.+||++.| |+.+++.++.++++++||||+. +||.+|.++||.+++|.++....+++....
T Consensus 183 ~~~~~~GKP~~~i--------------~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~~~~~~~~~ 248 (269)
T COG0647 183 REPTVIGKPSPAI--------------YEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSSAEDLDRAE 248 (269)
T ss_pred CcccccCCCCHHH--------------HHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCChhhhhhhc
Confidence 168999999 9999999999999999999996 699999999999999999998877776555
Q ss_pred cchhHHHHhhccc
Q 018946 335 RLADMLCRILKSI 347 (348)
Q Consensus 335 ~~~d~l~~~l~~i 347 (348)
..++++++++.++
T Consensus 249 ~~p~~v~~sl~~~ 261 (269)
T COG0647 249 VKPTYVVDSLAEL 261 (269)
T ss_pred cCCcchHhhHHHH
Confidence 5577777766553
No 84
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.26 E-value=9.9e-11 Score=111.27 Aligned_cols=121 Identities=25% Similarity=0.290 Sum_probs=86.9
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccc
Q 018946 148 KNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVL 227 (348)
Q Consensus 148 ~~~~~~~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~ 227 (348)
.+.+.+++.+..++++||+.+|++.|+++|++++|+|+| ....++.+++.+|+.+.+. .++++.-. +.
T Consensus 108 ~e~i~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G---~~~~Ie~vL~~lgl~~~~~-~IvSN~L~--------f~ 175 (277)
T TIGR01544 108 KAKIKEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAG---IGNVLEEVLRQAGVYHPNV-KVVSNFMD--------FD 175 (277)
T ss_pred HHHHHHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCC---cHHHHHHHHHHcCCCCcCc-eEEeeeEE--------EC
Confidence 456667766556899999999999999999999999997 6799999999999865443 33333211 11
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcC--CCCCcEEEEecCHh
Q 018946 228 GKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAE--KPVRNCFLIAGSQS 305 (348)
Q Consensus 228 g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lg--v~p~~~i~VGDs~~ 305 (348)
.+++..| ||.|-+.+ -.+...+ ++.++++++ .++++||+|||+.+
T Consensus 176 ~dGvltG----------------------------~~~P~i~~---~~K~~~v--~~~~~~~~~~~~~~~~vI~vGDs~~ 222 (277)
T TIGR01544 176 EDGVLKG----------------------------FKGPLIHT---FNKNHDV--ALRNTEYFNQLKDRSNIILLGDSQG 222 (277)
T ss_pred CCCeEeC----------------------------CCCCcccc---cccHHHH--HHHHHHHhCccCCcceEEEECcChh
Confidence 2333333 55553311 1122222 777889998 89999999999999
Q ss_pred hHHHHHHc
Q 018946 306 GVAGAQRI 313 (348)
Q Consensus 306 Di~aA~~a 313 (348)
|+.||..+
T Consensus 223 Dl~ma~g~ 230 (277)
T TIGR01544 223 DLRMADGV 230 (277)
T ss_pred hhhHhcCC
Confidence 99997766
No 85
>PLN02645 phosphoglycolate phosphatase
Probab=99.24 E-value=5e-11 Score=115.37 Aligned_cols=55 Identities=11% Similarity=-0.034 Sum_probs=49.3
Q ss_pred cCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCcEEEECCCCCCcccc
Q 018946 262 LKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPCVVMRSRCITTLPV 330 (348)
Q Consensus 262 ~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~-~Di~aA~~aG~~~i~v~~~~~~~~~l 330 (348)
+||+|.+ |+.+++++++++++++||||+. +||.+|+++||++|+|.++....+++
T Consensus 229 gKP~p~~--------------~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~ilV~~G~~~~~~~ 284 (311)
T PLN02645 229 GKPSTFM--------------MDYLANKFGIEKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSESML 284 (311)
T ss_pred CCChHHH--------------HHHHHHHcCCCcccEEEEcCCcHHHHHHHHHcCCCEEEEcCCCCCHHHH
Confidence 4777777 9999999999999999999997 89999999999999999988765554
No 86
>PRK08238 hypothetical protein; Validated
Probab=99.19 E-value=3.7e-10 Score=115.29 Aligned_cols=154 Identities=17% Similarity=0.195 Sum_probs=95.5
Q ss_pred eEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHHhhHHHHHHHHH--hcCCCCC
Q 018946 85 LAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRKNALDEFL--ASKDAPL 162 (348)
Q Consensus 85 kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l 162 (348)
..++||+||||+.++.+ + +.+...+++ .. | ..+.-..... .+.... ++.+.+.. .....++
T Consensus 11 ~pl~~DlDgTLi~td~l-~-e~~~~~l~~-~p----~--~~~~l~~~~~-~g~a~l-------K~~~a~~~~~d~~~lp~ 73 (479)
T PRK08238 11 LPLVVDLDGTLIRTDLL-H-ESIFALLRR-NP----L--ALLRLPLWLL-RGKAAL-------KRRLARRVDLDVATLPY 73 (479)
T ss_pred CCEEEeCCCCccccchH-H-HHHHHHHHh-Ch----H--HHHHHHHHHH-hcHHHH-------HHHHHhhcCCChhhCCC
Confidence 47899999999999986 3 444444432 11 1 1111111111 111111 11111111 1234678
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHHHH
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATE 242 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~~~ 242 (348)
+||+.++|++++++|++++|+|++ ....++.+++++|+ |+.++ +.+++..
T Consensus 74 ~pga~e~L~~lk~~G~~v~LaTas---~~~~a~~i~~~lGl---Fd~Vi-gsd~~~~----------------------- 123 (479)
T PRK08238 74 NEEVLDYLRAERAAGRKLVLATAS---DERLAQAVAAHLGL---FDGVF-ASDGTTN----------------------- 123 (479)
T ss_pred ChhHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHHHcCC---CCEEE-eCCCccc-----------------------
Confidence 899999999999999999999995 67999999999997 55543 3322211
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEECC
Q 018946 243 ARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRS 322 (348)
Q Consensus 243 ~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~~ 322 (348)
.||++.. ....++++ .++++++||+.+|+.+++.+| ..+.|+.
T Consensus 124 -------------------~kg~~K~---------------~~l~~~l~--~~~~~yvGDS~~Dlp~~~~A~-~av~Vn~ 166 (479)
T PRK08238 124 -------------------LKGAAKA---------------AALVEAFG--ERGFDYAGNSAADLPVWAAAR-RAIVVGA 166 (479)
T ss_pred -------------------cCCchHH---------------HHHHHHhC--ccCeeEecCCHHHHHHHHhCC-CeEEECC
Confidence 0333322 22335565 366999999999999999999 5555553
No 87
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.19 E-value=3.9e-11 Score=104.72 Aligned_cols=95 Identities=18% Similarity=0.318 Sum_probs=83.7
Q ss_pred CCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhH
Q 018946 159 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 238 (348)
Q Consensus 159 ~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~ 238 (348)
....-|.+++.+.+++.+|+++.|+|| +.+..+..+.+.+|+.-+...
T Consensus 44 ~~~~tpe~~~W~~e~k~~gi~v~vvSN---n~e~RV~~~~~~l~v~fi~~A----------------------------- 91 (175)
T COG2179 44 NPDATPELRAWLAELKEAGIKVVVVSN---NKESRVARAAEKLGVPFIYRA----------------------------- 91 (175)
T ss_pred CCCCCHHHHHHHHHHHhcCCEEEEEeC---CCHHHHHhhhhhcCCceeecc-----------------------------
Confidence 345678999999999999999999999 468889999999998754321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCcE
Q 018946 239 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPC 317 (348)
Q Consensus 239 ~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~-~Di~aA~~aG~~~ 317 (348)
.||.+.. |+.|+++++++|++|+||||.. .||.++.++||.|
T Consensus 92 -----------------------~KP~~~~--------------fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~t 134 (175)
T COG2179 92 -----------------------KKPFGRA--------------FRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRT 134 (175)
T ss_pred -----------------------cCccHHH--------------HHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEE
Confidence 2899888 9999999999999999999985 7999999999999
Q ss_pred EEECC
Q 018946 318 VVMRS 322 (348)
Q Consensus 318 i~v~~ 322 (348)
|+|..
T Consensus 135 IlV~P 139 (175)
T COG2179 135 ILVEP 139 (175)
T ss_pred EEEEE
Confidence 99974
No 88
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.18 E-value=2.4e-11 Score=105.20 Aligned_cols=95 Identities=21% Similarity=0.207 Sum_probs=76.2
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCccc-chheeecchhhhhhhcccccccccccCCchhH
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI-SKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 238 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~-f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~ 238 (348)
+.++||+.++|+.|+ ++++++|+|++ ....++.+++++++..+ |+.+ ++.+++..
T Consensus 44 v~l~pG~~e~L~~L~-~~~~l~I~Ts~---~~~~~~~il~~l~~~~~~f~~i-~~~~d~~~------------------- 99 (148)
T smart00577 44 VKKRPGVDEFLKRAS-ELFELVVFTAG---LRMYADPVLDLLDPKKYFGYRR-LFRDECVF------------------- 99 (148)
T ss_pred EEECCCHHHHHHHHH-hccEEEEEeCC---cHHHHHHHHHHhCcCCCEeeeE-EECccccc-------------------
Confidence 568999999999998 57999999996 56889999999999654 4544 33333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEE
Q 018946 239 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 318 (348)
Q Consensus 239 ~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i 318 (348)
.||+ |..+++++|.+|++||+|||+..|+.++.++|+.+-
T Consensus 100 -----------------------~KP~-----------------~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~ 139 (148)
T smart00577 100 -----------------------VKGK-----------------YVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPIK 139 (148)
T ss_pred -----------------------cCCe-----------------EeecHHHcCCChhcEEEEECCHHHhhcCccCEEEec
Confidence 1664 356789999999999999999999999999988654
No 89
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.17 E-value=3.5e-10 Score=100.96 Aligned_cols=178 Identities=12% Similarity=0.161 Sum_probs=105.5
Q ss_pred ceEEEEecCCccccccccChHHHHHHHHHHcCCCC--CCCCHHHHHHHHhcccCcHHHHHHHHhhHHHHHHHHHhcCCCC
Q 018946 84 DLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDC--ANWTAPIYTDLLRKSAGDEDRMLVLFFNRKNALDEFLASKDAP 161 (348)
Q Consensus 84 ~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (348)
.++|.||||.|++.-+.+ .++.+..|+.- ++|+...+..-+........++...... .....+++......
T Consensus 16 ~~aVcFDvDSTvi~eEgI------delA~~~G~~~~Va~~T~rAMng~~~F~eaL~~Rl~llqp~-~~qv~~~v~~~k~~ 88 (227)
T KOG1615|consen 16 ADAVCFDVDSTVIQEEGI------DELAAYCGVGEAVAEVTRRAMNGEADFQEALAARLSLLQPL-QVQVEQFVIKQKPT 88 (227)
T ss_pred cCeEEEecCcchhHHhhH------HHHHHHhCchHHHHHHHHHHhCCCCcHHHHHHHHHHHhccc-HHHHHHHHhcCCCc
Confidence 469999999999986654 55555556531 1222222211111111111111111111 34555555555678
Q ss_pred CCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcc--cchheeecchhhhhhhcccc-cccccccCCchhH
Q 018946 162 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER--ISKIKIVGNEEVERSLYGQF-VLGKGISSGVDEQ 238 (348)
Q Consensus 162 l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~--~f~~~i~~~~e~~~~~~~~~-v~g~~v~~~~~~~ 238 (348)
+-||++++...|+++|..|+++|++ +...+..+.+.||++. .+...+.-+..+ .|.++ +.+..+.
T Consensus 89 lT~Gi~eLv~~L~~~~~~v~liSGG---F~~~i~~Va~~Lgi~~~n~yAN~l~fd~~G---k~~gfd~~~ptsd------ 156 (227)
T KOG1615|consen 89 LTPGIRELVSRLHARGTQVYLISGG---FRQLIEPVAEQLGIPKSNIYANELLFDKDG---KYLGFDTNEPTSD------ 156 (227)
T ss_pred cCCCHHHHHHHHHHcCCeEEEEcCC---hHHHHHHHHHHhCCcHhhhhhheeeeccCC---cccccccCCcccc------
Confidence 8999999999999999999999997 8899999999999986 554443222111 12221 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEE
Q 018946 239 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 318 (348)
Q Consensus 239 ~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i 318 (348)
+-.+.++ +....+ ++.-..++||||+.+|++|..- |...+
T Consensus 157 ----------------------------------sggKa~~---i~~lrk--~~~~~~~~mvGDGatDlea~~p-a~afi 196 (227)
T KOG1615|consen 157 ----------------------------------SGGKAEV---IALLRK--NYNYKTIVMVGDGATDLEAMPP-ADAFI 196 (227)
T ss_pred ----------------------------------CCccHHH---HHHHHh--CCChheeEEecCCccccccCCc-hhhhh
Confidence 1122233 333334 8888999999999999997665 44334
Q ss_pred EE
Q 018946 319 VM 320 (348)
Q Consensus 319 ~v 320 (348)
..
T Consensus 197 ~~ 198 (227)
T KOG1615|consen 197 GF 198 (227)
T ss_pred cc
Confidence 33
No 90
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.16 E-value=1.3e-10 Score=112.90 Aligned_cols=90 Identities=12% Similarity=0.100 Sum_probs=78.9
Q ss_pred CCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHH----cCCcccchheeecchhhhhhhcccccccccccCCchh
Q 018946 162 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEK----LGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDE 237 (348)
Q Consensus 162 l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~----lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~ 237 (348)
++||+.++|+.|+++|++++|+|+ +....+..++++ +++.++|+.+..+
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~---n~~~~a~~~l~~~~~~~~~~~~f~~~~~~------------------------ 84 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASK---NDEDDAKKVFERRKDFILQAEDFDARSIN------------------------ 84 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcC---CCHHHHHHHHHhCccccCcHHHeeEEEEe------------------------
Confidence 478999999999999999999999 567889999998 8888888765321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCc
Q 018946 238 QLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMP 316 (348)
Q Consensus 238 ~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~ 316 (348)
.||+|+. ++.+++++|+.+++++||||++.|+.++++++-.
T Consensus 85 ------------------------~~pk~~~--------------i~~~~~~l~i~~~~~vfidD~~~d~~~~~~~lp~ 125 (320)
T TIGR01686 85 ------------------------WGPKSES--------------LRKIAKKLNLGTDSFLFIDDNPAERANVKITLPV 125 (320)
T ss_pred ------------------------cCchHHH--------------HHHHHHHhCCCcCcEEEECCCHHHHHHHHHHCCC
Confidence 1888888 9999999999999999999999999999998764
No 91
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.12 E-value=1.3e-09 Score=101.51 Aligned_cols=188 Identities=16% Similarity=0.200 Sum_probs=111.1
Q ss_pred EEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhccc--CcHHHHHHHHhhH---HHHHHHHHhcCCC
Q 018946 86 AVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSA--GDEDRMLVLFFNR---KNALDEFLASKDA 160 (348)
Q Consensus 86 aviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~~~ 160 (348)
.|+||||+||+|-+.. ..+++.++.. .+..++... ..... .-..++....... .+.+.+.+. .+
T Consensus 2 LvvfDFD~TIvd~dsd------~~v~~~l~~~--~~~~~l~~~-~~~~~wt~~m~~vl~~L~~~gvt~~~I~~~l~--~i 70 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDSD------DWVIELLPPE--ELPEELRES-YPKGGWTEYMDRVLQLLHEQGVTPEDIRDALR--SI 70 (234)
T ss_pred EEEEeCCCCccCCccH------HHHHHhcCCc--ccHHHHHHh-ccccchHHHHHHHHHHHHHcCCCHHHHHHHHH--cC
Confidence 6899999999998764 3344445544 232332222 22110 0011122111111 344445443 48
Q ss_pred CCCCcHHHHHHHH--HHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhH
Q 018946 161 PLRPGVEDFVDDA--YNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 238 (348)
Q Consensus 161 ~l~pGv~elL~~L--k~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~ 238 (348)
++.||+.++++.+ ++.|+.+.|+|.+ ....++.++++.|+...|+.+ +++...... .+.+.-
T Consensus 71 p~~pgm~~~l~~l~~~~~~~~~~IiSDa---Ns~fI~~iL~~~gl~~~f~~I-~TNpa~~~~--~G~l~v---------- 134 (234)
T PF06888_consen 71 PIDPGMKELLRFLAKNQRGFDLIIISDA---NSFFIETILEHHGLRDCFSEI-FTNPACFDA--DGRLRV---------- 134 (234)
T ss_pred CCCccHHHHHHHHHhcCCCceEEEEeCC---cHhHHHHHHHhCCCccccceE-EeCCceecC--CceEEE----------
Confidence 9999999999999 4579999999996 679999999999999988764 444221110 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCc--cCCCCCch--hhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcC
Q 018946 239 LATEARKAVSAQKQEIAEEVASMLKLSVD--IDTSSPES--LDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIG 314 (348)
Q Consensus 239 ~~~~~~k~~~~~~~~i~~~~~~~~KP~p~--i~~~~~~~--~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG 314 (348)
.|.-. . ..-|.+ +-+++..|..-..+-|+.-++++||||+.+|+-.+.+.+
T Consensus 135 ------------------------~pyh~h~C-~~C~~NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~ 189 (234)
T PF06888_consen 135 ------------------------RPYHSHGC-SLCPPNMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLR 189 (234)
T ss_pred ------------------------eCccCCCC-CcCCCccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccC
Confidence 01000 0 001222 344444444444446788899999999999999999987
Q ss_pred Cc-EEEECCCCC
Q 018946 315 MP-CVVMRSRCI 325 (348)
Q Consensus 315 ~~-~i~v~~~~~ 325 (348)
-. .|..+.++.
T Consensus 190 ~~D~v~~R~~~~ 201 (234)
T PF06888_consen 190 PRDVVFPRKGYP 201 (234)
T ss_pred CCCEEecCCCCh
Confidence 74 555555543
No 92
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.12 E-value=2.7e-10 Score=101.03 Aligned_cols=104 Identities=15% Similarity=0.261 Sum_probs=70.3
Q ss_pred CCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCc----------ccchheeecchhhhhhhccccccc
Q 018946 159 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE----------RISKIKIVGNEEVERSLYGQFVLG 228 (348)
Q Consensus 159 ~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~----------~~f~~~i~~~~e~~~~~~~~~v~g 228 (348)
.+.++|+|.++|..|+++|++++++|.+ +....++.+|+.+++. ++|+..
T Consensus 43 ~v~lypdv~~iL~~L~~~gv~lavASRt--~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~------------------ 102 (169)
T PF12689_consen 43 EVSLYPDVPEILQELKERGVKLAVASRT--DEPDWARELLKLLEIDDADGDGVPLIEYFDYL------------------ 102 (169)
T ss_dssp EE---TTHHHHHHHHHHCT--EEEEE----S-HHHHHHHHHHTT-C----------CCECEE------------------
T ss_pred EEEeCcCHHHHHHHHHHCCCEEEEEECC--CChHHHHHHHHhcCCCccccccccchhhcchh------------------
Confidence 4678999999999999999999999965 3578999999999998 444432
Q ss_pred ccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHH
Q 018946 229 KGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVA 308 (348)
Q Consensus 229 ~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~ 308 (348)
+||++ + .+.-|+.+.+..|++.++++||+|-..++.
T Consensus 103 --------------------------------------eI~~g---s---K~~Hf~~i~~~tgI~y~eMlFFDDe~~N~~ 138 (169)
T PF12689_consen 103 --------------------------------------EIYPG---S---KTTHFRRIHRKTGIPYEEMLFFDDESRNIE 138 (169)
T ss_dssp --------------------------------------EESSS-------HHHHHHHHHHHH---GGGEEEEES-HHHHH
T ss_pred --------------------------------------heecC---c---hHHHHHHHHHhcCCChhHEEEecCchhcce
Confidence 22211 0 111288899999999999999999999999
Q ss_pred HHHHcCCcEEEECCCCCC
Q 018946 309 GAQRIGMPCVVMRSRCIT 326 (348)
Q Consensus 309 aA~~aG~~~i~v~~~~~~ 326 (348)
...+.|..+|.|++|.+.
T Consensus 139 ~v~~lGV~~v~v~~Glt~ 156 (169)
T PF12689_consen 139 VVSKLGVTCVLVPDGLTW 156 (169)
T ss_dssp HHHTTT-EEEE-SSS--H
T ss_pred eeEecCcEEEEeCCCCCH
Confidence 999999999999986543
No 93
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.10 E-value=2.2e-10 Score=99.91 Aligned_cols=86 Identities=13% Similarity=0.133 Sum_probs=74.1
Q ss_pred HHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHHHHHHHHHH
Q 018946 169 FVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVS 248 (348)
Q Consensus 169 lL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~~~~~k~~~ 248 (348)
+|+.|+++|++++|+||. ....+..+++.+|+..+|+..
T Consensus 36 ~i~~Lk~~G~~i~IvTn~---~~~~~~~~l~~~gi~~~~~~~-------------------------------------- 74 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGR---KAKLVEDRCKTLGITHLYQGQ-------------------------------------- 74 (154)
T ss_pred HHHHHHHCCCEEEEEECC---CCHHHHHHHHHcCCCEEEecc--------------------------------------
Confidence 789999999999999995 567889999999998876421
Q ss_pred HHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEECCCC
Q 018946 249 AQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRC 324 (348)
Q Consensus 249 ~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~~~~ 324 (348)
||.|++ ++.+++++|+++++|+||||+.+|+.+++.+|+. +.+.+..
T Consensus 75 --------------~~k~~~--------------~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~-~~v~~~~ 121 (154)
T TIGR01670 75 --------------SNKLIA--------------FSDILEKLALAPENVAYIGDDLIDWPVMEKVGLS-VAVADAH 121 (154)
T ss_pred --------------cchHHH--------------HHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCe-EecCCcC
Confidence 555666 8999999999999999999999999999999997 6666543
No 94
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.09 E-value=3.6e-10 Score=116.27 Aligned_cols=95 Identities=17% Similarity=0.224 Sum_probs=73.5
Q ss_pred CCCcHHHHHHHHHHCCCcEEEEeCCCC---------CCchHHHHHHHHcCCcccchheeecchhhhhhhccccccccccc
Q 018946 162 LRPGVEDFVDDAYNEGIPLIVLTAYGK---------SGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGIS 232 (348)
Q Consensus 162 l~pGv~elL~~Lk~~Gi~vaIvTn~~~---------~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~ 232 (348)
++|||.+.|+.|+++|++++|+||... +....+..+++.+|+. |+.++ +.+..
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip--fdvii-a~~~~--------------- 259 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP--FQVFI-AIGAG--------------- 259 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc--eEEEE-eCCCC---------------
Confidence 579999999999999999999999532 0013477888888885 55432 22211
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcC----CCCCcEEEEecCHhhHH
Q 018946 233 SGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAE----KPVRNCFLIAGSQSGVA 308 (348)
Q Consensus 233 ~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lg----v~p~~~i~VGDs~~Di~ 308 (348)
..+||+|.+ +..++++++ +++++++||||+..|+.
T Consensus 260 ---------------------------~~RKP~pGm--------------~~~a~~~~~~~~~Id~~~S~~VGDaagr~~ 298 (526)
T TIGR01663 260 ---------------------------FYRKPLTGM--------------WDHLKEEANDGTEIQEDDCFFVGDAAGRPA 298 (526)
T ss_pred ---------------------------CCCCCCHHH--------------HHHHHHhcCcccCCCHHHeEEeCCcccchH
Confidence 135999999 999999984 89999999999998988
Q ss_pred HHHHcCC
Q 018946 309 GAQRIGM 315 (348)
Q Consensus 309 aA~~aG~ 315 (348)
+|.++|-
T Consensus 299 ~g~~ag~ 305 (526)
T TIGR01663 299 NGKAAGK 305 (526)
T ss_pred HHHhcCC
Confidence 8777765
No 95
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.07 E-value=2.8e-09 Score=97.72 Aligned_cols=110 Identities=10% Similarity=-0.039 Sum_probs=74.2
Q ss_pred CCCCCcHHHHHH-HHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecch-hhhhhhcccccccccccCCchh
Q 018946 160 APLRPGVEDFVD-DAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNE-EVERSLYGQFVLGKGISSGVDE 237 (348)
Q Consensus 160 ~~l~pGv~elL~-~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~-e~~~~~~~~~v~g~~v~~~~~~ 237 (348)
..++||+.++|+ .++++|++++|+||+ ++..++.+.+.+++..... + ++.+ ++. .++.+.|.
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas---~~~~~~~ia~~~~~~~~~~-~-i~t~le~~---~gg~~~g~-------- 156 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGS---PQPLVEAVYFDSNFIHRLN-L-IASQIERG---NGGWVLPL-------- 156 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCC---cHHHHHHHHHhccccccCc-E-EEEEeEEe---CCceEcCc--------
Confidence 357999999996 788899999999994 7899999998876633222 2 2322 221 11222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcE
Q 018946 238 QLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPC 317 (348)
Q Consensus 238 ~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~ 317 (348)
++.-+.. .+.+.++++.+.+.+.+.|||.+|+.+...+|-+.
T Consensus 157 -----------------------------------~c~g~~K---v~rl~~~~~~~~~~~~aYsDS~~D~pmL~~a~~~~ 198 (210)
T TIGR01545 157 -----------------------------------RCLGHEK---VAQLEQKIGSPLKLYSGYSDSKQDNPLLAFCEHRW 198 (210)
T ss_pred -----------------------------------cCCChHH---HHHHHHHhCCChhheEEecCCcccHHHHHhCCCcE
Confidence 1111122 23344555666678999999999999999999998
Q ss_pred EEECCC
Q 018946 318 VVMRSR 323 (348)
Q Consensus 318 i~v~~~ 323 (348)
++.+++
T Consensus 199 ~Vnp~~ 204 (210)
T TIGR01545 199 RVSKRG 204 (210)
T ss_pred EECcch
Confidence 877653
No 96
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.95 E-value=1.6e-09 Score=96.98 Aligned_cols=83 Identities=10% Similarity=0.107 Sum_probs=68.8
Q ss_pred HHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHHHHHHHHHH
Q 018946 169 FVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVS 248 (348)
Q Consensus 169 lL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~~~~~k~~~ 248 (348)
.++.|+++|++++|+||. ....+..+++.+|+..+|...
T Consensus 56 ~i~~L~~~Gi~v~I~T~~---~~~~v~~~l~~lgl~~~f~g~-------------------------------------- 94 (183)
T PRK09484 56 GIRCLLTSGIEVAIITGR---KSKLVEDRMTTLGITHLYQGQ-------------------------------------- 94 (183)
T ss_pred HHHHHHHCCCEEEEEeCC---CcHHHHHHHHHcCCceeecCC--------------------------------------
Confidence 567778899999999995 568889999999998776410
Q ss_pred HHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEEC
Q 018946 249 AQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 321 (348)
Q Consensus 249 ~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~ 321 (348)
++.++. ++.+++++|+++++|+||||+.+|+.+++++|+.++ +.
T Consensus 95 --------------~~k~~~--------------l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~~-v~ 138 (183)
T PRK09484 95 --------------SNKLIA--------------FSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSVA-VA 138 (183)
T ss_pred --------------CcHHHH--------------HHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeEe-cC
Confidence 222233 899999999999999999999999999999999954 54
No 97
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=98.95 E-value=5.3e-09 Score=94.42 Aligned_cols=169 Identities=14% Similarity=0.179 Sum_probs=109.7
Q ss_pred CCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchhe-------------------eecchhhhhhhc
Q 018946 162 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIK-------------------IVGNEEVERSLY 222 (348)
Q Consensus 162 l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~-------------------i~~~~e~~~~~~ 222 (348)
+.||+.|.+++|+.++.+|-.+||.+++....+..-+.++|++---+.+ ++-.++ ....|
T Consensus 24 avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~-a~~dF 102 (262)
T KOG3040|consen 24 AVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDD-ALEDF 102 (262)
T ss_pred cCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEccc-chhhC
Confidence 6899999999999999999999999887788888888888874211111 111222 22346
Q ss_pred cccccccc--ccCCchhH------------HHHHHHHHH--HHHHHHHHHHHHh----------------------hcCC
Q 018946 223 GQFVLGKG--ISSGVDEQ------------LATEARKAV--SAQKQEIAEEVAS----------------------MLKL 264 (348)
Q Consensus 223 ~~~v~g~~--v~~~~~~~------------~~~~~~k~~--~~~~~~i~~~~~~----------------------~~KP 264 (348)
++|-+... |..|..++ +..|.+|+. +--|.|-+..+.+ .+||
T Consensus 103 ~gidTs~pn~VViglape~F~y~~ln~AFrvL~e~~k~~LIai~kgryykr~~Gl~lgpG~fv~aLeyatg~~a~vvGKP 182 (262)
T KOG3040|consen 103 DGIDTSDPNCVVIGLAPEGFSYQRLNRAFRVLLEMKKPLLIAIGKGRYYKRVDGLCLGPGPFVAALEYATGCEATVVGKP 182 (262)
T ss_pred CCccCCCCCeEEEecCcccccHHHHHHHHHHHHcCCCCeEEEecCceeeeeccccccCchHHHHHhhhccCceEEEecCC
Confidence 66665422 23343322 111111100 0011121221111 7899
Q ss_pred CCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHh-hHHHHHHcCCcEEEECCCCCCcccccccc----cchhH
Q 018946 265 SVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQS-GVAGAQRIGMPCVVMRSRCITTLPVSKTQ----RLADM 339 (348)
Q Consensus 265 ~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~-Di~aA~~aG~~~i~v~~~~~~~~~l~~~~----~~~d~ 339 (348)
+|.. |+.+++.+|++|++++||||-.+ |+-+|.+.||..|.|.++--+..+..... .++|.
T Consensus 183 ~~~f--------------Fe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTGK~rpsDe~k~~~~p~~~~d~ 248 (262)
T KOG3040|consen 183 SPFF--------------FESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVKTGKFRPSDEEKPPVPPDLTADN 248 (262)
T ss_pred CHHH--------------HHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEeeccccCCcccccCCCCcchhhhh
Confidence 9999 99999999999999999999875 89999999999999999866553333332 24555
Q ss_pred HHHhhc
Q 018946 340 LCRILK 345 (348)
Q Consensus 340 l~~~l~ 345 (348)
+.+..+
T Consensus 249 f~~AVd 254 (262)
T KOG3040|consen 249 FADAVD 254 (262)
T ss_pred HHHHHH
Confidence 555443
No 98
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=98.94 E-value=7.3e-09 Score=98.31 Aligned_cols=73 Identities=11% Similarity=0.070 Sum_probs=62.8
Q ss_pred hcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCcEEEECCCCCCccccccc----cc
Q 018946 261 MLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPCVVMRSRCITTLPVSKT----QR 335 (348)
Q Consensus 261 ~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~-~Di~aA~~aG~~~i~v~~~~~~~~~l~~~----~~ 335 (348)
.+||++.| +..+.++++++|++|+||||+. +||.-+++.|+++++|-++....++.... ..
T Consensus 222 ~GKP~~~m--------------~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~~~~~~~~~~ 287 (306)
T KOG2882|consen 222 LGKPSTFM--------------FEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDILEAQGDNKM 287 (306)
T ss_pred cCCCCHHH--------------HHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHHHhcccccCC
Confidence 68999999 9999999999999999999997 59999999999999999998876655433 33
Q ss_pred chhHHHHhhccc
Q 018946 336 LADMLCRILKSI 347 (348)
Q Consensus 336 ~~d~l~~~l~~i 347 (348)
++|++++.+.++
T Consensus 288 ~PDyy~~~l~d~ 299 (306)
T KOG2882|consen 288 VPDYYADSLGDL 299 (306)
T ss_pred CCchHHhhHHHH
Confidence 588888877655
No 99
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=98.93 E-value=6.6e-09 Score=101.07 Aligned_cols=71 Identities=11% Similarity=0.138 Sum_probs=53.1
Q ss_pred hcCCCCccCCCCCchhhHHHHHHHHHHHHc--------CC-----CCCcEEEEecCH-hhHHHHHHcCCcEEEECCCCCC
Q 018946 261 MLKLSVDIDTSSPESLDKIVAALRAGAEYA--------EK-----PVRNCFLIAGSQ-SGVAGAQRIGMPCVVMRSRCIT 326 (348)
Q Consensus 261 ~~KP~p~i~~~~~~~~~~~~~~~~~a~~~l--------gv-----~p~~~i~VGDs~-~Di~aA~~aG~~~i~v~~~~~~ 326 (348)
++||+|.+ |+.+++.+ ++ ++++++||||.. +||.+|+++||.+|+|.++...
T Consensus 231 ~GKP~~~~--------------~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~ 296 (321)
T TIGR01456 231 LGKPTKLT--------------YDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYN 296 (321)
T ss_pred cCCCChHH--------------HHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccccC
Confidence 58999999 88888877 43 457999999997 8999999999999999998555
Q ss_pred ccccc---ccccchhHHHHhhc
Q 018946 327 TLPVS---KTQRLADMLCRILK 345 (348)
Q Consensus 327 ~~~l~---~~~~~~d~l~~~l~ 345 (348)
..+.. ....+++++.+.+.
T Consensus 297 ~~~~~~~~~p~~vv~~l~e~~~ 318 (321)
T TIGR01456 297 GGDDLKECKPTLIVNDVFDAVT 318 (321)
T ss_pred CCCCCCCCCCCEEECCHHHHHH
Confidence 44321 12334555555544
No 100
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.89 E-value=1e-09 Score=102.24 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=73.6
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHHHH
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATE 242 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~~~ 242 (348)
+|++.++++.++++|+++ |+||.. .......+..+|...++..+.. ..++.+.
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d---~~~~~~~~~~~~~g~~~~~i~~-------------~g~~~~~---------- 192 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPD---RGINQHGIYRYGAGYYAELIKQ-------------LGGKVIY---------- 192 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCC---EeccCCCceEecccHHHHHHHH-------------hCCcEec----------
Confidence 578899999998899997 889953 3333334455555554442200 1111111
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCC-CCcEEEEecC-HhhHHHHHHcCCcEEEE
Q 018946 243 ARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKP-VRNCFLIAGS-QSGVAGAQRIGMPCVVM 320 (348)
Q Consensus 243 ~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~-p~~~i~VGDs-~~Di~aA~~aG~~~i~v 320 (348)
.+||+|.+ |+.+++++|.. +++|+||||+ .+||.+|+++||.+++|
T Consensus 193 ------------------~gKP~~~~--------------~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~~G~~~i~v 240 (242)
T TIGR01459 193 ------------------SGKPYPAI--------------FHKALKECSNIPKNRMLMVGDSFYTDILGANRLGIDTALV 240 (242)
T ss_pred ------------------CCCCCHHH--------------HHHHHHHcCCCCcccEEEECCCcHHHHHHHHHCCCeEEEE
Confidence 24999999 99999999975 6799999999 69999999999999998
Q ss_pred CC
Q 018946 321 RS 322 (348)
Q Consensus 321 ~~ 322 (348)
.+
T Consensus 241 ~t 242 (242)
T TIGR01459 241 LT 242 (242)
T ss_pred eC
Confidence 64
No 101
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.87 E-value=2.4e-08 Score=93.70 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=33.6
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEE
Q 018946 283 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 318 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i 318 (348)
++.+++++|++++++++|||+.||+.+++.+|+.++
T Consensus 204 l~~l~~~~gi~~~e~i~~GD~~NDi~m~~~ag~~va 239 (272)
T PRK10530 204 LTQWVEAQGWSMKNVVAFGDNFNDISMLEAAGLGVA 239 (272)
T ss_pred HHHHHHHcCCCHHHeEEeCCChhhHHHHHhcCceEE
Confidence 889999999999999999999999999999998543
No 102
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.86 E-value=2.2e-08 Score=94.97 Aligned_cols=51 Identities=14% Similarity=0.268 Sum_probs=40.1
Q ss_pred cCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccc
Q 018946 157 SKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERIS 207 (348)
Q Consensus 157 ~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f 207 (348)
....++.||+.++|+.|+++|++++++||........+...++++|+...+
T Consensus 114 ~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~ 164 (266)
T TIGR01533 114 AAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQAD 164 (266)
T ss_pred cCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCC
Confidence 345678999999999999999999999997433344455778888987644
No 103
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=98.84 E-value=1.7e-08 Score=90.23 Aligned_cols=113 Identities=12% Similarity=0.099 Sum_probs=79.5
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCC---C-CC-----c---hHHHHHHHHcCCcccchheeecchhhhhhhcccccc
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYG---K-SG-----D---RIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVL 227 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~---~-~~-----~---~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~ 227 (348)
+.+.||+.+.+..|++.|++++++||-+ + .+ + ..+...++..|. -++.+.++-. ..
T Consensus 30 ~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv--~id~i~~Cph----------~p 97 (181)
T COG0241 30 FQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGV--KIDGILYCPH----------HP 97 (181)
T ss_pred hccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCC--ccceEEECCC----------CC
Confidence 3578999999999999999999999931 0 00 0 112223333332 1222211110 00
Q ss_pred cccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 018946 228 GKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGV 307 (348)
Q Consensus 228 g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di 307 (348)
. +-+.++||.|.+ ++.+++++++++++.++|||...|+
T Consensus 98 ~----------------------------~~c~cRKP~~gm--------------~~~~~~~~~iD~~~s~~VGD~~~Dl 135 (181)
T COG0241 98 E----------------------------DNCDCRKPKPGM--------------LLSALKEYNIDLSRSYVVGDRLTDL 135 (181)
T ss_pred C----------------------------CCCcccCCChHH--------------HHHHHHHhCCCccceEEecCcHHHH
Confidence 0 114578999999 9999999999999999999999999
Q ss_pred HHHHHcCCcEEEECCCCCC
Q 018946 308 AGAQRIGMPCVVMRSRCIT 326 (348)
Q Consensus 308 ~aA~~aG~~~i~v~~~~~~ 326 (348)
++|.++|++.+.+.++...
T Consensus 136 q~a~n~gi~~~~~~~~~~~ 154 (181)
T COG0241 136 QAAENAGIKGVLVLTGIGV 154 (181)
T ss_pred HHHHHCCCCceEEEcCccc
Confidence 9999999998888765443
No 104
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.83 E-value=2.7e-08 Score=87.98 Aligned_cols=40 Identities=20% Similarity=0.502 Sum_probs=35.9
Q ss_pred CcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCccc
Q 018946 164 PGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI 206 (348)
Q Consensus 164 pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~ 206 (348)
|++.++|+.++++|++++|+|++ +...++.+++.+|+...
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~---~~~~i~~~~~~~~i~~~ 131 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGS---PDEIIEPIAERLGIDDD 131 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEE---EHHHHHHHHHHTTSSEG
T ss_pred hhHHHHHHHHHHCCCEEEEECCC---cHHHHHHHHHHcCCCce
Confidence 66669999999999999999994 78999999999999763
No 105
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=98.79 E-value=9.7e-08 Score=88.85 Aligned_cols=49 Identities=16% Similarity=0.242 Sum_probs=43.5
Q ss_pred hcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcE-EEEecCH-hhHHHHHHcCCcEEEECCC
Q 018946 261 MLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNC-FLIAGSQ-SGVAGAQRIGMPCVVMRSR 323 (348)
Q Consensus 261 ~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~-i~VGDs~-~Di~aA~~aG~~~i~v~~~ 323 (348)
.+||+|++ |+.++++++++++++ +||||+. +||.+|+++||++|+|.++
T Consensus 186 ~~KP~~~~--------------~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~~G 236 (236)
T TIGR01460 186 VGKPSPAI--------------YRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLVLTG 236 (236)
T ss_pred ecCCCHHH--------------HHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEEecC
Confidence 45777777 999999999999887 9999998 8999999999999999764
No 106
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=98.73 E-value=1.1e-07 Score=84.28 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=35.5
Q ss_pred HHHHHHHcCC-----CCCcEEEEecCH-hhHHHHHHcCCcEEEECCCC
Q 018946 283 LRAGAEYAEK-----PVRNCFLIAGSQ-SGVAGAQRIGMPCVVMRSRC 324 (348)
Q Consensus 283 ~~~a~~~lgv-----~p~~~i~VGDs~-~Di~aA~~aG~~~i~v~~~~ 324 (348)
+..+.++++. .|+++++|||-. .||.+|.+.|+.+|++..+.
T Consensus 120 ~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~gv 167 (168)
T PF09419_consen 120 FREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDGV 167 (168)
T ss_pred HHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEEEecCc
Confidence 5666677654 499999999975 79999999999999998764
No 107
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=98.73 E-value=4.9e-08 Score=95.64 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=86.0
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHc-C-------Ccccchheeecchhhhhhhccc------c
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKL-G-------SERISKIKIVGNEEVERSLYGQ------F 225 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~l-g-------l~~~f~~~i~~~~e~~~~~~~~------~ 225 (348)
+...||+.++|+.|+++|++++|+||+ ....+..+++.+ | +.++|+.++.+.. +..+|.. +
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS---~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~--KP~FF~~~~pf~~v 257 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNS---DYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDAR--KPGFFTEGRPFRQV 257 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCC---CHHHHHHHHHHhhCCcccccchHhhCcEEEeCCC--CCcccCCCCceEEE
Confidence 456899999999999999999999994 678999999996 7 8999997765543 2223321 0
Q ss_pred cccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCH-
Q 018946 226 VLGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQ- 304 (348)
Q Consensus 226 v~g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~- 304 (348)
...++.... . .+.+ .+| ..+|...+ +....+.+|+.++++++|||+.
T Consensus 258 ~~~~g~~~~------------~---------~~~~-l~~-g~vY~gGn---------~~~~~~~l~~~~~~vlYvGD~i~ 305 (343)
T TIGR02244 258 DVETGSLKW------------G---------EVDG-LEP-GKVYSGGS---------LKQFHELLKWRGKEVLYFGDHIY 305 (343)
T ss_pred eCCCCcccC------------C---------cccc-ccC-CCeEeCCC---------HHHHHHHHCCCCCcEEEECCcch
Confidence 000000000 0 0000 011 11221111 6677889999999999999986
Q ss_pred hhHHHHH-HcCCcEEEECC
Q 018946 305 SGVAGAQ-RIGMPCVVMRS 322 (348)
Q Consensus 305 ~Di~aA~-~aG~~~i~v~~ 322 (348)
.||.+++ .+||.||+|..
T Consensus 306 ~Di~~~kk~~Gw~TvlI~p 324 (343)
T TIGR02244 306 GDLLRSKKKRGWRTAAIIP 324 (343)
T ss_pred HHHHhhHHhcCcEEEEEch
Confidence 6999998 99999999874
No 108
>PTZ00445 p36-lilke protein; Provisional
Probab=98.72 E-value=4.1e-08 Score=89.46 Aligned_cols=51 Identities=8% Similarity=-0.047 Sum_probs=46.4
Q ss_pred hcCCCCcc--CCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEECCC
Q 018946 261 MLKLSVDI--DTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSR 323 (348)
Q Consensus 261 ~~KP~p~i--~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~~~ 323 (348)
+.||+|++ |- ++.+++++|+.|++|+||+|...++++|++.||.++.+.++
T Consensus 155 l~KPdp~iK~yH------------le~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 155 LDAPMPLDKSYH------------LKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred ccCCCccchHHH------------HHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCCh
Confidence 45999999 33 49999999999999999999999999999999999999864
No 109
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=98.70 E-value=2.1e-07 Score=82.61 Aligned_cols=106 Identities=9% Similarity=0.072 Sum_probs=73.8
Q ss_pred CCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHH---cCCcccchheeecchhhhhhhcccccccccccCCc
Q 018946 159 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEK---LGSERISKIKIVGNEEVERSLYGQFVLGKGISSGV 235 (348)
Q Consensus 159 ~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~---lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~ 235 (348)
..+++|++.+.|++-++.|++|.|.|.++ .+....++.. .++..+|+.. |+. ..|.
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGS---V~AQkL~Fghs~agdL~~lfsGy-----------fDt-------tiG~ 159 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGS---VKAQKLFFGHSDAGDLNSLFSGY-----------FDT-------TIGK 159 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCC---chhHHHhhcccccccHHhhhcce-----------eec-------cccc
Confidence 35689999999999999999999999973 2333333222 1222233211 111 1110
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCC
Q 018946 236 DEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGM 315 (348)
Q Consensus 236 ~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~ 315 (348)
|-... .|..+++..|++|.+++|+.|.+..+.||+.+||
T Consensus 160 ---------------------------KrE~~--------------SY~kIa~~iGl~p~eilFLSDn~~EL~AA~~vGl 198 (229)
T COG4229 160 ---------------------------KRESQ--------------SYAKIAGDIGLPPAEILFLSDNPEELKAAAGVGL 198 (229)
T ss_pred ---------------------------cccch--------------hHHHHHHhcCCCchheEEecCCHHHHHHHHhcch
Confidence 11111 1899999999999999999999999999999999
Q ss_pred cEEEECCCCCC
Q 018946 316 PCVVMRSRCIT 326 (348)
Q Consensus 316 ~~i~v~~~~~~ 326 (348)
.|+++..+.+.
T Consensus 199 ~t~l~~R~g~~ 209 (229)
T COG4229 199 ATGLAVRPGNA 209 (229)
T ss_pred heeeeecCCCC
Confidence 99988765543
No 110
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=98.70 E-value=4.4e-08 Score=86.10 Aligned_cols=98 Identities=14% Similarity=0.216 Sum_probs=64.0
Q ss_pred CCCcHHHHHHHHHHCCCcEEEEeCCCCCCc-----------hHHHHHHHHcCCcccchheeecchhhhhhhccccccccc
Q 018946 162 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGD-----------RIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKG 230 (348)
Q Consensus 162 l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~-----------~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~ 230 (348)
+.|+|.+.|..|.++|+.++|+||-..-.. ..+..+++.+++.-. ++++...
T Consensus 30 ~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip~~---~~~a~~~-------------- 92 (159)
T PF08645_consen 30 FPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIPIQ---VYAAPHK-------------- 92 (159)
T ss_dssp C-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS-EE---EEECGCS--------------
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCceE---EEecCCC--------------
Confidence 346899999999999999999998531111 233444555554411 1111100
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCC----CCCcEEEEecC---
Q 018946 231 ISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEK----PVRNCFLIAGS--- 303 (348)
Q Consensus 231 v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv----~p~~~i~VGDs--- 303 (348)
-.+|||.+.| ++.+.+.++. +.++++||||.
T Consensus 93 ----------------------------d~~RKP~~GM--------------~~~~~~~~~~~~~id~~~Sf~VGDaagr 130 (159)
T PF08645_consen 93 ----------------------------DPCRKPNPGM--------------WEFALKDYNDGVEIDLANSFYVGDAAGR 130 (159)
T ss_dssp ----------------------------STTSTTSSHH--------------HHHHCCCTSTT--S-CCC-EEEESSCHC
T ss_pred ----------------------------CCCCCCchhH--------------HHHHHHhccccccccccceEEEeccCCC
Confidence 0257999999 9999999874 88999999996
Q ss_pred --------HhhHHHHHHcCCcEE
Q 018946 304 --------QSGVAGAQRIGMPCV 318 (348)
Q Consensus 304 --------~~Di~aA~~aG~~~i 318 (348)
..|..=|.++|++..
T Consensus 131 ~~~~~d~s~~D~~fA~N~gi~f~ 153 (159)
T PF08645_consen 131 SKKKKDFSDSDRKFALNCGIKFY 153 (159)
T ss_dssp TB-S--S--HHHHHHHHHT--EE
T ss_pred CCcccccChhHHHHHHHcCCccc
Confidence 679999999999753
No 111
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=2.6e-07 Score=82.09 Aligned_cols=174 Identities=21% Similarity=0.295 Sum_probs=102.2
Q ss_pred EEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHH---HHHHHHhhHHHHHHHHHhcCCCCC
Q 018946 86 AVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDED---RMLVLFFNRKNALDEFLASKDAPL 162 (348)
Q Consensus 86 aviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l 162 (348)
.|+-|+|||++-.+.. .-+.+.+|.+ +|. .++...+.....-.+ +|............+++.. .+.+
T Consensus 5 vi~sDFDGTITl~Ds~------~~itdtf~~~--e~k-~l~~~vls~tiS~rd~~g~mf~~i~~s~~Eile~llk-~i~I 74 (220)
T COG4359 5 VIFSDFDGTITLNDSN------DYITDTFGPG--EWK-ALKDGVLSKTISFRDGFGRMFGSIHSSLEEILEFLLK-DIKI 74 (220)
T ss_pred EEEecCCCceEecchh------HHHHhccCch--HHH-HHHHHHhhCceeHHHHHHHHHHhcCCCHHHHHHHHHh-hccc
Confidence 6788999999865542 4455556665 454 445554444332222 2222111112333344433 3689
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcC-Ccccchheeecchhhhhhhcc-cccccccccCCchhHHH
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLG-SERISKIKIVGNEEVERSLYG-QFVLGKGISSGVDEQLA 240 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lg-l~~~f~~~i~~~~e~~~~~~~-~~v~g~~v~~~~~~~~~ 240 (348)
.||.+++++.++++++++.|+|+| .+..+..+++.++ -++...+-+++++.....--. -++.-+.-..|.+
T Consensus 75 dp~fKef~e~ike~di~fiVvSsG---m~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~d---- 147 (220)
T COG4359 75 DPGFKEFVEWIKEHDIPFIVVSSG---MDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHD---- 147 (220)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCC---CchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCC----
Confidence 999999999999999999999998 5789999999775 344444445554433221000 0000011111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEE
Q 018946 241 TEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 318 (348)
Q Consensus 241 ~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i 318 (348)
++.+| ..+.-.++.++|.|||.+|+.||+....-.+
T Consensus 148 -----------------------------------K~~vI-------~~l~e~~e~~fy~GDsvsDlsaaklsDllFA 183 (220)
T COG4359 148 -----------------------------------KSSVI-------HELSEPNESIFYCGDSVSDLSAAKLSDLLFA 183 (220)
T ss_pred -----------------------------------cchhH-------HHhhcCCceEEEecCCcccccHhhhhhhHhh
Confidence 12222 4455567789999999999999998766443
No 112
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=98.67 E-value=9.5e-07 Score=80.66 Aligned_cols=191 Identities=13% Similarity=0.122 Sum_probs=109.0
Q ss_pred CceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHH-----HHHHHH---hhHHHHHHHH
Q 018946 83 RDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDED-----RMLVLF---FNRKNALDEF 154 (348)
Q Consensus 83 ~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~---~~~~~~~~~~ 154 (348)
+...++||+|-||+|-+.. +-+.+.++.. +...++......+.+ ++..+. ..+.....+.
T Consensus 12 ~ril~~FDFD~TIid~dSD------~wVv~~lp~~------~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~ 79 (256)
T KOG3120|consen 12 PRILLVFDFDRTIIDQDSD------NWVVDELPTT------DLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQV 79 (256)
T ss_pred CcEEEEEecCceeecCCcc------hHHHHhcccc------hhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 4559999999999997764 2222323322 112222222111111 111110 1113344444
Q ss_pred HhcCCCCCCCcHHHHHHHHHHCCC-cEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccC
Q 018946 155 LASKDAPLRPGVEDFVDDAYNEGI-PLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISS 233 (348)
Q Consensus 155 ~~~~~~~l~pGv~elL~~Lk~~Gi-~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~ 233 (348)
+. .+|+.||+.++|+.+++.|. .+.|+|.+ ....++.+++.+|+.++|..+ +++.......=...|.....++
T Consensus 80 ~r--~iP~~Pgmv~lik~~ak~g~~eliIVSDa---NsfFIe~~Lea~~~~d~F~~I-fTNPa~~da~G~L~v~pyH~~h 153 (256)
T KOG3120|consen 80 LR--SIPIVPGMVRLIKSAAKLGCFELIIVSDA---NSFFIEEILEAAGIHDLFSEI-FTNPACVDASGRLLVRPYHTQH 153 (256)
T ss_pred Hh--cCCCCccHHHHHHHHHhCCCceEEEEecC---chhHHHHHHHHccHHHHHHHH-hcCCcccCCCCcEEeecCCCCC
Confidence 43 48999999999999999985 99999985 469999999999999999854 4443222110000011000000
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHH--cCCCCCcEEEEecCHhhHHHHH
Q 018946 234 GVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEY--AEKPVRNCFLIAGSQSGVAGAQ 311 (348)
Q Consensus 234 ~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~--lgv~p~~~i~VGDs~~Di~aA~ 311 (348)
+.. -.|.++=|+...-+..++. -|+.-++.+||||+.+|+-.-.
T Consensus 154 ---------------------------------sC~-~CPsNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l 199 (256)
T KOG3120|consen 154 ---------------------------------SCN-LCPSNMCKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVL 199 (256)
T ss_pred ---------------------------------ccC-cCchhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcch
Confidence 000 0245555554434444444 4677789999999999987766
Q ss_pred HcC-CcEEEECCCCC
Q 018946 312 RIG-MPCVVMRSRCI 325 (348)
Q Consensus 312 ~aG-~~~i~v~~~~~ 325 (348)
..- ..++.-+.++.
T Consensus 200 ~Lr~~D~ampRkgfp 214 (256)
T KOG3120|consen 200 RLRACDVAMPRKGFP 214 (256)
T ss_pred hcccCceecccCCCc
Confidence 654 45555544543
No 113
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.56 E-value=4.6e-07 Score=84.40 Aligned_cols=93 Identities=10% Similarity=0.158 Sum_probs=68.4
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcc-cchheeecchhhhhhhcccccccccccCCchhH
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER-ISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 238 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~-~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~ 238 (348)
..++||+.++|+.|+++|++++++||..++ .......++++|+.. +|+.++.+++ +...
T Consensus 23 ~~~~pga~e~L~~L~~~G~~~~ivTN~~~~-~~~~~~~L~~~gl~~~~~~~Ii~s~~-~~~~------------------ 82 (242)
T TIGR01459 23 NHTYPGAVQNLNKIIAQGKPVYFVSNSPRN-IFSLHKTLKSLGINADLPEMIISSGE-IAVQ------------------ 82 (242)
T ss_pred CccCccHHHHHHHHHHCCCEEEEEeCCCCC-hHHHHHHHHHCCCCccccceEEccHH-HHHH------------------
Confidence 457999999999999999999999997542 222236789999987 8886644332 2110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCC
Q 018946 239 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGM 315 (348)
Q Consensus 239 ~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~ 315 (348)
. +..++++++++|++|++|||+..|+......|.
T Consensus 83 -----------------------------~--------------l~~~~~~~~~~~~~~~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 83 -----------------------------M--------------ILESKKRFDIRNGIIYLLGHLENDIINLMQCYT 116 (242)
T ss_pred -----------------------------H--------------HHhhhhhccCCCceEEEeCCcccchhhhcCCCc
Confidence 0 566667788888899999998888877765554
No 114
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=98.53 E-value=1.7e-07 Score=97.28 Aligned_cols=85 Identities=14% Similarity=0.221 Sum_probs=68.6
Q ss_pred CCCCCcHHHHHHHHHHCCC-cEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhH
Q 018946 160 APLRPGVEDFVDDAYNEGI-PLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 238 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi-~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~ 238 (348)
-+++||+.++|+.|+++|+ +++++|| +....++.+++++|++++|....
T Consensus 361 d~l~~~~~e~i~~L~~~Gi~~v~vvTg---d~~~~a~~i~~~lgi~~~f~~~~--------------------------- 410 (536)
T TIGR01512 361 DEPRPDAAEAIAELKALGIEKVVMLTG---DRRAVAERVARELGIDEVHAELL--------------------------- 410 (536)
T ss_pred ccchHHHHHHHHHHHHcCCCcEEEEcC---CCHHHHHHHHHHcCChhhhhccC---------------------------
Confidence 4689999999999999999 9999999 47899999999999988765321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCC
Q 018946 239 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGM 315 (348)
Q Consensus 239 ~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~ 315 (348)
|+.+ ....++++...++++||||+.+|+.+++++|+
T Consensus 411 ----------------------------------p~~K-------~~~i~~l~~~~~~v~~vGDg~nD~~al~~A~v 446 (536)
T TIGR01512 411 ----------------------------------PEDK-------LEIVKELREKYGPVAMVGDGINDAPALAAADV 446 (536)
T ss_pred ----------------------------------cHHH-------HHHHHHHHhcCCEEEEEeCCHHHHHHHHhCCE
Confidence 0111 12335555566899999999999999999996
No 115
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.51 E-value=1.2e-06 Score=82.10 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=39.1
Q ss_pred chhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEEC
Q 018946 274 ESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 321 (348)
Q Consensus 274 ~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~ 321 (348)
+...|.. |++.+++++|++++++++|||+.||+.+.+.+|..+++=+
T Consensus 186 ~g~~K~~-al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam~N 232 (264)
T COG0561 186 KGVSKGY-ALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMGN 232 (264)
T ss_pred CCCchHH-HHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeeccC
Confidence 3344543 3888999999999999999999999999999999866544
No 116
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=98.50 E-value=1e-06 Score=80.27 Aligned_cols=39 Identities=10% Similarity=0.043 Sum_probs=35.3
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEEC
Q 018946 283 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 321 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~ 321 (348)
++.+++++|++++++++|||+.||+.+++.+|+.+++-+
T Consensus 154 i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~N 192 (225)
T TIGR01482 154 VKKLKEKLGIKPGETLVCGDSENDIDLFEVPGFGVAVAN 192 (225)
T ss_pred HHHHHHHhCCCHHHEEEECCCHhhHHHHHhcCceEEcCC
Confidence 788999999999999999999999999999999755543
No 117
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=98.47 E-value=2.1e-07 Score=97.05 Aligned_cols=47 Identities=26% Similarity=0.416 Sum_probs=42.3
Q ss_pred CCCCCcHHHHHHHHHHCC-CcEEEEeCCCCCCchHHHHHHHHcCCcccchh
Q 018946 160 APLRPGVEDFVDDAYNEG-IPLIVLTAYGKSGDRIARSVVEKLGSERISKI 209 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~G-i~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~ 209 (348)
.+++||+.++|+.|+++| ++++++||. ....++.+++++|++++|..
T Consensus 383 d~~~~g~~e~l~~L~~~g~i~v~ivTgd---~~~~a~~i~~~lgi~~~f~~ 430 (556)
T TIGR01525 383 DQLRPEAKEAIAALKRAGGIKLVMLTGD---NRSAAEAVAAELGIDEVHAE 430 (556)
T ss_pred ccchHhHHHHHHHHHHcCCCeEEEEeCC---CHHHHHHHHHHhCCCeeecc
Confidence 568999999999999999 999999994 67899999999999887753
No 118
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.47 E-value=4e-07 Score=86.99 Aligned_cols=49 Identities=18% Similarity=0.225 Sum_probs=42.4
Q ss_pred CcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecch
Q 018946 164 PGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNE 215 (348)
Q Consensus 164 pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~ 215 (348)
||+.++|++|+++|++++|+|++ ....+...++++|+..+|+.++.+++
T Consensus 149 PgV~EaL~~LkekGikLaIaTS~---~Re~v~~~L~~lGLd~YFdvIIs~Gd 197 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVLWSYG---DRDHVVESMRKVKLDRYFDIIISGGH 197 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEEECC---CHHHHHHHHHHcCCCcccCEEEECCc
Confidence 89999999999999999999996 45778899999999999987654443
No 119
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.41 E-value=8.3e-07 Score=81.25 Aligned_cols=39 Identities=18% Similarity=0.119 Sum_probs=35.5
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEEC
Q 018946 283 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 321 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~ 321 (348)
++.+++++|++++++++|||+.||+.+++.+|+.+++-+
T Consensus 162 l~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~N 200 (230)
T PRK01158 162 LKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFGVAVAN 200 (230)
T ss_pred HHHHHHHhCCCHHHEEEECCchhhHHHHHhcCceEEecC
Confidence 889999999999999999999999999999999865543
No 120
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.31 E-value=4.9e-07 Score=79.58 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=76.6
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcc-cchheeecchhhhhhhcccccccccccCCchhH
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER-ISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 238 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~-~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~ 238 (348)
+..|||+.+||+.|.+. +.++|.|++ ....++.+++.++... +|...+....-. .
T Consensus 41 v~~RPgl~eFL~~l~~~-yei~I~Ts~---~~~yA~~il~~ldp~~~~f~~~l~r~~~~-~------------------- 96 (162)
T TIGR02251 41 VFKRPHVDEFLERVSKW-YELVIFTAS---LEEYADPVLDILDRGGKVISRRLYRESCV-F------------------- 96 (162)
T ss_pred EEECCCHHHHHHHHHhc-CEEEEEcCC---cHHHHHHHHHHHCcCCCEEeEEEEccccE-E-------------------
Confidence 45799999999999988 999999996 5789999999999875 776554322110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEE
Q 018946 239 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 318 (348)
Q Consensus 239 ~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i 318 (348)
.||. |.+.+..+|.++++||+|||++.++.++.++|+.+.
T Consensus 97 -----------------------~~~~-----------------~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~ 136 (162)
T TIGR02251 97 -----------------------TNGK-----------------YVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIK 136 (162)
T ss_pred -----------------------eCCC-----------------EEeEchhcCCChhhEEEEeCChhhhccCccCEeecC
Confidence 0111 234567789999999999999999999999999877
Q ss_pred EEC
Q 018946 319 VMR 321 (348)
Q Consensus 319 ~v~ 321 (348)
...
T Consensus 137 ~f~ 139 (162)
T TIGR02251 137 SWF 139 (162)
T ss_pred CCC
Confidence 665
No 121
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.31 E-value=3.5e-07 Score=82.22 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=25.7
Q ss_pred EEEecCHhhHHHHHHcCCcEEEECCCCCCccc
Q 018946 298 FLIAGSQSGVAGAQRIGMPCVVMRSRCITTLP 329 (348)
Q Consensus 298 i~VGDs~~Di~aA~~aG~~~i~v~~~~~~~~~ 329 (348)
++|+|++..+..+...|+++|++..+++....
T Consensus 139 vlIDD~~~n~~~~~~~g~~~iLfd~p~Nr~~~ 170 (191)
T PF06941_consen 139 VLIDDRPHNLEQFANAGIPVILFDQPYNRDES 170 (191)
T ss_dssp EEEESSSHHHSS-SSESSEEEEE--GGGTT--
T ss_pred EEecCChHHHHhccCCCceEEEEcCCCCCCCC
Confidence 89999999999999999999999999988765
No 122
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.27 E-value=1.3e-06 Score=91.28 Aligned_cols=42 Identities=26% Similarity=0.484 Sum_probs=38.5
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCc
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 204 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~ 204 (348)
.+++||+.++|+.|+++|++++++|+. ....++.+.+.+|++
T Consensus 404 d~l~~~a~e~i~~Lk~~Gi~v~ilSgd---~~~~a~~ia~~lgi~ 445 (562)
T TIGR01511 404 DQLRPEAKEVIQALKRRGIEPVMLTGD---NRKTAKAVAKELGIN 445 (562)
T ss_pred ccccHHHHHHHHHHHHcCCeEEEEcCC---CHHHHHHHHHHcCCc
Confidence 467999999999999999999999994 678999999999996
No 123
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.26 E-value=1.8e-05 Score=74.97 Aligned_cols=40 Identities=13% Similarity=0.073 Sum_probs=36.6
Q ss_pred HHHHHHHcCCCC-CcEEEEecCHhhHHHHHHcCCcEEEECC
Q 018946 283 LRAGAEYAEKPV-RNCFLIAGSQSGVAGAQRIGMPCVVMRS 322 (348)
Q Consensus 283 ~~~a~~~lgv~p-~~~i~VGDs~~Di~aA~~aG~~~i~v~~ 322 (348)
++.+++++|+++ +++++|||+.||+.+++.+|+.+++-+.
T Consensus 195 l~~l~~~~~i~~~~~v~~~GDs~NDi~m~~~ag~~vam~NA 235 (273)
T PRK00192 195 VRWLKELYRRQDGVETIALGDSPNDLPMLEAADIAVVVPGP 235 (273)
T ss_pred HHHHHHHHhccCCceEEEEcCChhhHHHHHhCCeeEEeCCC
Confidence 788899999999 9999999999999999999998776653
No 124
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=98.21 E-value=2.5e-05 Score=73.76 Aligned_cols=119 Identities=17% Similarity=0.268 Sum_probs=79.3
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCc--cc-chh-ee------ecchhhhhhhcccccccc
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE--RI-SKI-KI------VGNEEVERSLYGQFVLGK 229 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~--~~-f~~-~i------~~~~e~~~~~~~~~v~g~ 229 (348)
....+.+.++++.+.++|+++..+|....+.....-..++.+|++ .. |.. .. .........++.++....
T Consensus 80 ~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~ 159 (252)
T PF11019_consen 80 ELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTG 159 (252)
T ss_pred EEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeC
Confidence 346789999999999999999999998766666677777788875 11 110 00 011111122223333322
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHH
Q 018946 230 GISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAG 309 (348)
Q Consensus 230 ~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~a 309 (348)
+...| .++...+.+.|..|+.+|||+|+..++..
T Consensus 160 ~~~KG----------------------------------------------~~L~~fL~~~~~~pk~IIfIDD~~~nl~s 193 (252)
T PF11019_consen 160 GQDKG----------------------------------------------EVLKYFLDKINQSPKKIIFIDDNKENLKS 193 (252)
T ss_pred CCccH----------------------------------------------HHHHHHHHHcCCCCCeEEEEeCCHHHHHH
Confidence 22221 22899999999999999999999987654
Q ss_pred ----HHHcCCcEEEECCCC
Q 018946 310 ----AQRIGMPCVVMRSRC 324 (348)
Q Consensus 310 ----A~~aG~~~i~v~~~~ 324 (348)
+...|+..+++....
T Consensus 194 v~~a~k~~~I~f~G~~Yt~ 212 (252)
T PF11019_consen 194 VEKACKKSGIDFIGFHYTG 212 (252)
T ss_pred HHHHHhhCCCcEEEEEEcc
Confidence 445689888887643
No 125
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=98.21 E-value=8.5e-06 Score=74.35 Aligned_cols=37 Identities=5% Similarity=-0.031 Sum_probs=34.5
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEE
Q 018946 283 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVV 319 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~ 319 (348)
++.+++++|++++++++|||+.||+.+.+.+|..+++
T Consensus 184 l~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va~ 220 (221)
T TIGR02463 184 ANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVVI 220 (221)
T ss_pred HHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEEe
Confidence 7889999999999999999999999999999988654
No 126
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.19 E-value=2.7e-06 Score=92.71 Aligned_cols=86 Identities=13% Similarity=0.211 Sum_probs=68.4
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHH
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLA 240 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~ 240 (348)
+++||+.+.|++|++.|++++++|+. ....++.+.+.+|+.++|....
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd---~~~~a~~ia~~lgi~~~~~~~~----------------------------- 697 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGD---NPTTANAIAKEAGIDEVIAGVL----------------------------- 697 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCC---CHHHHHHHHHHcCCCEEEeCCC-----------------------------
Confidence 67999999999999999999999994 6788899999999987654220
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcE
Q 018946 241 TEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPC 317 (348)
Q Consensus 241 ~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~ 317 (348)
|+.+ ..+.++++..+++++||||+.||+.+++.+|+..
T Consensus 698 --------------------------------p~~K-------~~~i~~l~~~~~~v~~vGDg~nD~~al~~Agvgi 735 (834)
T PRK10671 698 --------------------------------PDGK-------AEAIKRLQSQGRQVAMVGDGINDAPALAQADVGI 735 (834)
T ss_pred --------------------------------HHHH-------HHHHHHHhhcCCEEEEEeCCHHHHHHHHhCCeeE
Confidence 0111 1233556667889999999999999999999944
No 127
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.18 E-value=1.4e-05 Score=72.70 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=35.8
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEEC
Q 018946 283 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 321 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~ 321 (348)
++.+++++|++++++++|||+.||+.+++.+|+.+++-+
T Consensus 152 i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag~~vam~n 190 (215)
T TIGR01487 152 VEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFKVAVAN 190 (215)
T ss_pred HHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCeEEcCC
Confidence 889999999999999999999999999999999866654
No 128
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.18 E-value=5.7e-06 Score=78.04 Aligned_cols=40 Identities=10% Similarity=0.132 Sum_probs=36.0
Q ss_pred HHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEEC
Q 018946 282 ALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 321 (348)
Q Consensus 282 ~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~ 321 (348)
+++.+++++|+++++++.|||+.||+.|.+.+|..+++-+
T Consensus 192 al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~N 231 (272)
T PRK15126 192 ALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGN 231 (272)
T ss_pred HHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccC
Confidence 3899999999999999999999999999999998755543
No 129
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.09 E-value=8e-06 Score=75.95 Aligned_cols=56 Identities=25% Similarity=0.360 Sum_probs=41.8
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCccc
Q 018946 151 LDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI 206 (348)
Q Consensus 151 ~~~~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~ 206 (348)
+.+.+.....++.||+.+|++.++++|+.|.++||...+.......-|.+.|+..+
T Consensus 105 w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~ 160 (229)
T PF03767_consen 105 WDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGW 160 (229)
T ss_dssp HHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTB
T ss_pred HHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCcc
Confidence 33444444457899999999999999999999999755444556666777786543
No 130
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.07 E-value=9e-06 Score=77.92 Aligned_cols=51 Identities=20% Similarity=0.188 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhh
Q 018946 164 PGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEV 217 (348)
Q Consensus 164 pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~ 217 (348)
||+.++|++|+++|++++|+||+ ....+...++.+|+..+|+.++.++...
T Consensus 151 p~V~EtL~eLkekGikLaIvTNg---~Re~v~~~Le~lgL~~yFDvII~~g~i~ 201 (303)
T PHA03398 151 PFVYDSLDELKERGCVLVLWSYG---NREHVVHSLKETKLEGYFDIIICGGRKA 201 (303)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCC---ChHHHHHHHHHcCCCccccEEEECCCcc
Confidence 78999999999999999999996 4578899999999999998776655433
No 131
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=97.97 E-value=3.8e-05 Score=67.28 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=28.1
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHH
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEK 200 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~ 200 (348)
.|++.++++.++++|++++++|+...+.....+..++.
T Consensus 29 ~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~ 66 (157)
T smart00775 29 HPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQ 66 (157)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHH
Confidence 58999999999999999999999632111222456665
No 132
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=97.92 E-value=3.7e-05 Score=82.94 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=39.3
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCccc
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI 206 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~ 206 (348)
+++||+.+.|+.|++.|++++++|+ .....++.+.+.+|++.+
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTG---d~~~~a~~ia~~lgi~~~ 610 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTG---DNPRAAAAIAGELGIDFR 610 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHcCCCee
Confidence 7899999999999999999999999 468999999999999643
No 133
>COG4996 Predicted phosphatase [General function prediction only]
Probab=97.92 E-value=2e-05 Score=66.60 Aligned_cols=51 Identities=18% Similarity=0.117 Sum_probs=45.1
Q ss_pred CCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheee
Q 018946 159 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIV 212 (348)
Q Consensus 159 ~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~ 212 (348)
.+.++|.|++++..+|+.|+.+..+|= |+...+-..++.+++..||..+++
T Consensus 39 ev~L~~~v~~~l~warnsG~i~~~~sW---N~~~kA~~aLral~~~~yFhy~Vi 89 (164)
T COG4996 39 EVHLFPDVKETLKWARNSGYILGLASW---NFEDKAIKALRALDLLQYFHYIVI 89 (164)
T ss_pred EEEEcHHHHHHHHHHHhCCcEEEEeec---CchHHHHHHHHHhchhhhEEEEEe
Confidence 367899999999999999999999995 578888899999999999997753
No 134
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.91 E-value=7.4e-05 Score=69.48 Aligned_cols=90 Identities=16% Similarity=0.127 Sum_probs=57.9
Q ss_pred CceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHHhhHHHHHHHHHhcCCCCC
Q 018946 83 RDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRKNALDEFLASKDAPL 162 (348)
Q Consensus 83 ~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 162 (348)
...+||||+|.|+++..+. .+.+. +|-. .++. ..+.+.+.....++
T Consensus 76 g~~A~V~DIDET~LsN~py---~~~~~----~g~~--~~~~-------------------------~~~~~wv~~~~apa 121 (229)
T TIGR01675 76 GMDAWIFDVDDTLLSNIPY---YKKHG----YGTE--KTDP-------------------------TAFWLWLGKGAAPA 121 (229)
T ss_pred CCcEEEEccccccccCHHH---HHHhc----cCCC--cCCH-------------------------HHHHHHHHcCCCCC
Confidence 4569999999999997754 11111 1111 1111 12222334455689
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCccc
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI 206 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~ 206 (348)
.|++.++++.|+++|++|.++|+...........-|.+.|+..+
T Consensus 122 ip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~ 165 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGW 165 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999632122225556667777654
No 135
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=97.84 E-value=3.7e-05 Score=66.97 Aligned_cols=84 Identities=12% Similarity=0.152 Sum_probs=68.9
Q ss_pred HHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHHHHHHHHHH
Q 018946 169 FVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATEARKAVS 248 (348)
Q Consensus 169 lL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~~~~~k~~~ 248 (348)
-|+.+.+.|++++|+|+. ....++.-.+.||+.+++..+
T Consensus 43 Gik~l~~~Gi~vAIITGr---~s~ive~Ra~~LGI~~~~qG~-------------------------------------- 81 (170)
T COG1778 43 GIKLLLKSGIKVAIITGR---DSPIVEKRAKDLGIKHLYQGI-------------------------------------- 81 (170)
T ss_pred HHHHHHHcCCeEEEEeCC---CCHHHHHHHHHcCCceeeech--------------------------------------
Confidence 467778889999999996 458899999999998766432
Q ss_pred HHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEEC
Q 018946 249 AQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 321 (348)
Q Consensus 249 ~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~ 321 (348)
....++|+.+++++++.+++|.||||-.+|+....+.|.++..-.
T Consensus 82 ----------------------------~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm~~vGls~a~~d 126 (170)
T COG1778 82 ----------------------------SDKLAAFEELLKKLNLDPEEVAYVGDDLVDLPVMEKVGLSVAVAD 126 (170)
T ss_pred ----------------------------HhHHHHHHHHHHHhCCCHHHhhhhcCccccHHHHHHcCCcccccc
Confidence 001123999999999999999999999999999999999876543
No 136
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=97.83 E-value=0.00067 Score=64.37 Aligned_cols=41 Identities=17% Similarity=0.090 Sum_probs=34.0
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHc---CCcEEEECCC
Q 018946 283 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRI---GMPCVVMRSR 323 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~a---G~~~i~v~~~ 323 (348)
++.+++.+|+..+++++|||..+|+.+-+.+ |..+|.|...
T Consensus 179 l~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a 222 (266)
T PRK10187 179 IAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTG 222 (266)
T ss_pred HHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeEEEECCC
Confidence 7888999999999999999999999998887 3345666543
No 137
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=97.81 E-value=0.00036 Score=71.95 Aligned_cols=104 Identities=18% Similarity=0.213 Sum_probs=67.2
Q ss_pred CCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHH-cCCcccchheeecch-hh-hhhhcccccccccccCCchhH
Q 018946 162 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEK-LGSERISKIKIVGNE-EV-ERSLYGQFVLGKGISSGVDEQ 238 (348)
Q Consensus 162 l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~-lgl~~~f~~~i~~~~-e~-~~~~~~~~v~g~~v~~~~~~~ 238 (348)
++|.+.+. ++++|. ++|+|. +++..++.+.+. +|++.. ++.+ ++ ..+.|++.+.|.+...|
T Consensus 111 l~~~a~~~---~~~~g~-~vvVSA---Sp~~~Vepfa~~~LGid~V-----IgTeLev~~~G~~TG~i~g~~~c~G---- 174 (497)
T PLN02177 111 VHPETWRV---FNSFGK-RYIITA---SPRIMVEPFVKTFLGADKV-----LGTELEVSKSGRATGFMKKPGVLVG---- 174 (497)
T ss_pred cCHHHHHH---HHhCCC-EEEEEC---CcHHHHHHHHHHcCCCCEE-----EecccEECcCCEEeeeecCCCCCcc----
Confidence 56666554 456774 499999 478999999976 898863 3332 33 35566666665433222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEE
Q 018946 239 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 318 (348)
Q Consensus 239 ~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i 318 (348)
+.. .+.+.+.+|.+... ++.|||.+|..+...++-+.+
T Consensus 175 --------------------------------------e~K---v~rl~~~~g~~~~~-~aYgDS~sD~plL~~a~e~y~ 212 (497)
T PLN02177 175 --------------------------------------DHK---RDAVLKEFGDALPD-LGLGDRETDHDFMSICKEGYM 212 (497)
T ss_pred --------------------------------------HHH---HHHHHHHhCCCCce-EEEECCccHHHHHHhCCccEE
Confidence 111 22333556654344 899999999999999998876
Q ss_pred EECCC
Q 018946 319 VMRSR 323 (348)
Q Consensus 319 ~v~~~ 323 (348)
+-.+.
T Consensus 213 V~~~~ 217 (497)
T PLN02177 213 VPRTK 217 (497)
T ss_pred eCCCC
Confidence 65533
No 138
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=97.80 E-value=4.1e-05 Score=84.12 Aligned_cols=113 Identities=24% Similarity=0.339 Sum_probs=74.7
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHH
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLA 240 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~ 240 (348)
+++||+.+.|+.|+++|+++.++|+ .....+..+.+.+|+...++..+ ++++.... .++++
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTG---D~~~tA~~ia~~~Gi~~~~~~~v-~g~~l~~~--------------~~~~l- 588 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITG---DSQETAVSIARRLGMPSKTSQSV-SGEKLDAM--------------DDQQL- 588 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECC---CCHHHHHHHHHHcCCCCCCCcee-EhHHhHhC--------------CHHHH-
Confidence 7899999999999999999999999 46789999999999987655432 33332210 01100
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCccCC-CCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEE
Q 018946 241 TEARKAVSAQKQEIAEEVASMLKLSVDIDT-SSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 318 (348)
Q Consensus 241 ~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~-~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i 318 (348)
.++ -++..++. ..|+.+..+|.++ ++. .+.+.|+||+.||+.|+++|++...
T Consensus 589 -----------~~~--------~~~~~Vfar~~P~~K~~iv~~l----q~~---g~~v~mvGDGvND~pAl~~AdVGia 641 (884)
T TIGR01522 589 -----------SQI--------VPKVAVFARASPEHKMKIVKAL----QKR---GDVVAMTGDGVNDAPALKLADIGVA 641 (884)
T ss_pred -----------HHH--------hhcCeEEEECCHHHHHHHHHHH----HHC---CCEEEEECCCcccHHHHHhCCeeEe
Confidence 011 01222221 1244454444322 333 4789999999999999999996533
No 139
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=97.72 E-value=0.00011 Score=69.72 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=36.8
Q ss_pred HhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcc
Q 018946 155 LASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 205 (348)
Q Consensus 155 ~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~ 205 (348)
+.....++.||+.+|.+.++++|++|.++||...........-|.+.|+..
T Consensus 139 v~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~ 189 (275)
T TIGR01680 139 VNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHT 189 (275)
T ss_pred HhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCC
Confidence 444567899999999999999999999999974222233444455566654
No 140
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=97.70 E-value=0.00026 Score=60.03 Aligned_cols=116 Identities=9% Similarity=0.135 Sum_probs=79.2
Q ss_pred CCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhH
Q 018946 159 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQ 238 (348)
Q Consensus 159 ~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~ 238 (348)
+-.+++.+.+.|++|++. +.++|.|+- -...+....+..|+...- +.. +
T Consensus 28 gGklf~ev~e~iqeL~d~-V~i~IASgD---r~gsl~~lae~~gi~~~r---v~a--------------------~---- 76 (152)
T COG4087 28 GGKLFSEVSETIQELHDM-VDIYIASGD---RKGSLVQLAEFVGIPVER---VFA--------------------G---- 76 (152)
T ss_pred CcEEcHhhHHHHHHHHHh-heEEEecCC---cchHHHHHHHHcCCceee---eec--------------------c----
Confidence 457899999999999999 999999983 345666677777754210 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEE
Q 018946 239 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 318 (348)
Q Consensus 239 ~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i 318 (348)
..++.+. ...+.|+-+-+.|+||||+.||+.+.+++....+
T Consensus 77 --------------------------------a~~e~K~-------~ii~eLkk~~~k~vmVGnGaND~laLr~ADlGI~ 117 (152)
T COG4087 77 --------------------------------ADPEMKA-------KIIRELKKRYEKVVMVGNGANDILALREADLGIC 117 (152)
T ss_pred --------------------------------cCHHHHH-------HHHHHhcCCCcEEEEecCCcchHHHhhhcccceE
Confidence 1122222 2335666667899999999999999999999988
Q ss_pred EECCCCCCcccccccccchhHHHHhh
Q 018946 319 VMRSRCITTLPVSKTQRLADMLCRIL 344 (348)
Q Consensus 319 ~v~~~~~~~~~l~~~~~~~d~l~~~l 344 (348)
.+.....+...+..++.++.++.+++
T Consensus 118 tiq~e~v~~r~l~~ADvvik~i~e~l 143 (152)
T COG4087 118 TIQQEGVPERLLLTADVVLKEIAEIL 143 (152)
T ss_pred EeccCCcchHHHhhchhhhhhHHHHH
Confidence 88775544444555555555555554
No 141
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=97.50 E-value=0.00016 Score=76.93 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=40.1
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccc
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERIS 207 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f 207 (348)
+++||+.+.+++|++.|++++++|+ .....+..+.+.+|+++++
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTG---D~~~ta~~iA~~lGI~~v~ 489 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITG---DNRLTAAAIAAEAGVDDFI 489 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHcCCCEEE
Confidence 6899999999999999999999999 4679999999999998654
No 142
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=97.49 E-value=0.00027 Score=75.25 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=40.8
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccch
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISK 208 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~ 208 (348)
+++||+++.+++||+.|+++.++|+ .....+..+.+.+|++++|.
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTG---Dn~~TA~aIA~elGI~~v~A 485 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTG---DNELTAATIAKEAGVDRFVA 485 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECC---CCHHHHHHHHHHcCCceEEc
Confidence 6899999999999999999999999 56889999999999987553
No 143
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.49 E-value=0.00028 Score=75.50 Aligned_cols=45 Identities=24% Similarity=0.488 Sum_probs=40.9
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccch
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISK 208 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~ 208 (348)
+++|++.+.+++|++.|+++.++|+ .....++.+.+++|++++..
T Consensus 537 ~~R~~a~~aI~~L~~~Gi~~~mLTG---Dn~~~A~~iA~~lGId~v~A 581 (713)
T COG2217 537 ELRPDAKEAIAALKALGIKVVMLTG---DNRRTAEAIAKELGIDEVRA 581 (713)
T ss_pred CCChhHHHHHHHHHHCCCeEEEEcC---CCHHHHHHHHHHcChHhhec
Confidence 6899999999999999999999998 56899999999999987654
No 144
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=97.47 E-value=0.00038 Score=65.33 Aligned_cols=41 Identities=20% Similarity=0.069 Sum_probs=33.6
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEECCCC
Q 018946 283 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRC 324 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~~~~ 324 (348)
++.+++++++++++++++|||.||+.+. ..+...|+|.+..
T Consensus 170 l~~L~~~~~~~~~~vl~aGDSgND~~mL-~~~~~~vvV~Na~ 210 (247)
T PF05116_consen 170 LRYLMERWGIPPEQVLVAGDSGNDLEML-EGGDHGVVVGNAQ 210 (247)
T ss_dssp HHHHHHHHT--GGGEEEEESSGGGHHHH-CCSSEEEE-TTS-
T ss_pred HHHHHHHhCCCHHHEEEEeCCCCcHHHH-cCcCCEEEEcCCC
Confidence 8899999999999999999999999988 7788889998643
No 145
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=97.46 E-value=0.00044 Score=73.18 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCCCCcEEEE--ecCHhhHHHHHHcCCcEEE
Q 018946 282 ALRAGAEYAEKPVRNCFLI--AGSQSGVAGAQRIGMPCVV 319 (348)
Q Consensus 282 ~~~~a~~~lgv~p~~~i~V--GDs~~Di~aA~~aG~~~i~ 319 (348)
|++.+++.+|++.++++.| ||+.||+.+.+.+|..+++
T Consensus 617 AL~~L~e~~gI~~~eViafalGDs~NDisMLe~Ag~gVAM 656 (694)
T PRK14502 617 AIKILNELFRLNFGNIHTFGLGDSENDYSMLETVDSPILV 656 (694)
T ss_pred HHHHHHHHhCCCccceEEEEcCCcHhhHHHHHhCCceEEE
Confidence 3888999999999999999 9999999999999998666
No 146
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=97.45 E-value=0.00024 Score=75.73 Aligned_cols=45 Identities=16% Similarity=0.353 Sum_probs=40.5
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccch
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISK 208 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~ 208 (348)
+++||+++.+++||+.|+++.++|+ .....+..+.+.+|+++++.
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTG---Dn~~TA~aIA~elGId~v~A 489 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITG---DNPLTAAAIAAEAGVDDFLA 489 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECC---CCHHHHHHHHHHcCCcEEEc
Confidence 5799999999999999999999999 56899999999999987543
No 147
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=97.37 E-value=0.002 Score=57.48 Aligned_cols=109 Identities=11% Similarity=0.131 Sum_probs=66.3
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCCCCCC-chHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHHH
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAYGKSG-DRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLAT 241 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~~~~~-~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~~ 241 (348)
..-++++|+--..+|=.++.+|+.+... +.....+.+.+.+.....++ ..|+
T Consensus 116 KevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~---------------f~Gd------------ 168 (237)
T COG3700 116 KEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVI---------------FAGD------------ 168 (237)
T ss_pred HHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCccee---------------eccC------------
Confidence 4457778888888899999999865322 23333344455553322211 1122
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEEC
Q 018946 242 EARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 321 (348)
Q Consensus 242 ~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~ 321 (348)
||.|.-|+ =-.+++.-++. |+.|||.+||.||+++|++.|-+-
T Consensus 169 ---------------------k~k~~qy~------------Kt~~i~~~~~~----IhYGDSD~Di~AAkeaG~RgIRil 211 (237)
T COG3700 169 ---------------------KPKPGQYT------------KTQWIQDKNIR----IHYGDSDNDITAAKEAGARGIRIL 211 (237)
T ss_pred ---------------------CCCccccc------------ccHHHHhcCce----EEecCCchhhhHHHhcCccceeEE
Confidence 55555543 22333444544 999999999999999999988665
Q ss_pred CC-CCCccccccccc
Q 018946 322 SR-CITTLPVSKTQR 335 (348)
Q Consensus 322 ~~-~~~~~~l~~~~~ 335 (348)
.. ......++.+..
T Consensus 212 RAaNSTy~PlP~aGg 226 (237)
T COG3700 212 RAANSTYKPLPQAGG 226 (237)
T ss_pred ecCCccCCcCcccCC
Confidence 43 334445655433
No 148
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=97.35 E-value=0.0057 Score=56.58 Aligned_cols=109 Identities=10% Similarity=0.143 Sum_probs=75.9
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHH
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLA 240 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~ 240 (348)
..++++...++.-+++|+++.|.|.+. ......+...-+-.+.- +...+.|+.-+ |.
T Consensus 123 ~v~aDv~~a~e~w~~~g~~vyIYSSgs---v~AqKllfg~s~~gdl~--------~y~~gyfDt~i-G~----------- 179 (254)
T KOG2630|consen 123 HVYADVLPAIERWSGEGVRVYIYSSGS---VAAQKLLFGYSDAGDLR--------KYISGYFDTTI-GL----------- 179 (254)
T ss_pred cccchhHHHHHHHhhcCceEEEEcCCc---HHHHHHHHcccCcchHH--------HHhhhhhhccc-cc-----------
Confidence 578999999999999999999999972 33333333332211110 12222222211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEE
Q 018946 241 TEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVM 320 (348)
Q Consensus 241 ~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v 320 (348)
|=--.. |..+.+.+|.++.+++|.-|-..-..+|+.+|+.+.++
T Consensus 180 ----------------------K~e~~s--------------y~~I~~~Ig~s~~eiLfLTd~~~Ea~aa~~aGl~a~l~ 223 (254)
T KOG2630|consen 180 ----------------------KVESQS--------------YKKIGHLIGKSPREILFLTDVPREAAAARKAGLQAGLV 223 (254)
T ss_pred ----------------------eehhHH--------------HHHHHHHhCCChhheEEeccChHHHHHHHhcccceeee
Confidence 111112 89999999999999999999999999999999999998
Q ss_pred CCCCCCcc
Q 018946 321 RSRCITTL 328 (348)
Q Consensus 321 ~~~~~~~~ 328 (348)
..+.+...
T Consensus 224 ~rPgna~l 231 (254)
T KOG2630|consen 224 SRPGNAPL 231 (254)
T ss_pred ecCCCCCC
Confidence 88777654
No 149
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=97.33 E-value=0.00053 Score=69.80 Aligned_cols=125 Identities=10% Similarity=0.095 Sum_probs=70.7
Q ss_pred CCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHc---------CCcccchheeecchhhhhhhccc------cc
Q 018946 162 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKL---------GSERISKIKIVGNEEVERSLYGQ------FV 226 (348)
Q Consensus 162 l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~l---------gl~~~f~~~i~~~~e~~~~~~~~------~v 226 (348)
.-|.+..+|+.||++|.++.++|| |.-..+..+++.+ .+.++||++|+.+.. ..+|.. +.
T Consensus 184 k~~~l~~~L~~lr~~GKklFLiTN---S~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~K--P~FF~~~~pfr~vd 258 (448)
T PF05761_consen 184 KDPKLPPWLERLRSAGKKLFLITN---SPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARK--PGFFTEGRPFREVD 258 (448)
T ss_dssp --CHHHHHHHHHHCCT-EEEEE-S---S-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--C--CHHHCT---EEEEE
T ss_pred CCchHHHHHHHHHhcCceEEEecC---CCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCC--CcccCCCCceEEEE
Confidence 468999999999999999999999 4678888888854 356899998876531 122211 11
Q ss_pred ccccccCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCH-h
Q 018946 227 LGKGISSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQ-S 305 (348)
Q Consensus 227 ~g~~v~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~-~ 305 (348)
...+...... .+..+++. .+|. ... +....+.+|....++++|||+. .
T Consensus 259 ~~~g~l~~~~---------------------~~~~l~~g-~vY~---gGn------~~~l~~ll~~~g~~VLY~GDhi~~ 307 (448)
T PF05761_consen 259 TETGKLKWGK---------------------YVGPLEKG-KVYS---GGN------WDQLHKLLGWRGKEVLYFGDHIYG 307 (448)
T ss_dssp TTTSSEECS------------------------SS--TC--EEE---E--------HHHHHHHCT--GGGEEEEESSTTT
T ss_pred CCCCcccccc---------------------ccccccCC-CEee---cCC------HHHHHHHHccCCCeEEEECCchhh
Confidence 1111100000 00000111 1111 001 5666788899999999999996 6
Q ss_pred hHHHHHHc-CCcEEEECC
Q 018946 306 GVAGAQRI-GMPCVVMRS 322 (348)
Q Consensus 306 Di~aA~~a-G~~~i~v~~ 322 (348)
||...+.. ||.|++|-.
T Consensus 308 Di~~~k~~~gWrT~~Ii~ 325 (448)
T PF05761_consen 308 DILKSKKRHGWRTAAIIP 325 (448)
T ss_dssp THHHHHHHH-SEEEEE-T
T ss_pred hhhhhccccceEEEEEeh
Confidence 98877777 999999864
No 150
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=97.21 E-value=0.004 Score=50.48 Aligned_cols=52 Identities=21% Similarity=0.233 Sum_probs=38.2
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchhee
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKI 211 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i 211 (348)
..+.||+.++|+.|+++|+++.++||.+..........++.+|+.--.+.++
T Consensus 13 ~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ 64 (101)
T PF13344_consen 13 NEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEII 64 (101)
T ss_dssp TEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEE
T ss_pred CCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEE
Confidence 3578999999999999999999999987555566677778899874444443
No 151
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=97.17 E-value=0.00087 Score=58.74 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=42.7
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCc-ccchheeecc
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE-RISKIKIVGN 214 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~-~~f~~~i~~~ 214 (348)
+.++||+.++|+.|++. ++++|+|++ ....+..+++.+++. .+|...+++.
T Consensus 57 v~~rPgv~efL~~l~~~-yel~I~T~~---~~~yA~~vl~~ldp~~~~F~~ri~~r 108 (156)
T TIGR02250 57 TKLRPFLHEFLKEASKL-YEMHVYTMG---TRAYAQAIAKLIDPDGKYFGDRIISR 108 (156)
T ss_pred EEECCCHHHHHHHHHhh-cEEEEEeCC---cHHHHHHHHHHhCcCCCeeccEEEEe
Confidence 56899999999999965 999999996 578999999999998 4785454443
No 152
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=97.10 E-value=0.0059 Score=56.45 Aligned_cols=37 Identities=5% Similarity=0.047 Sum_probs=31.3
Q ss_pred HHHHHHHcCC--CCCcEEEEecCHhhHHHHHHcCCcEEE
Q 018946 283 LRAGAEYAEK--PVRNCFLIAGSQSGVAGAQRIGMPCVV 319 (348)
Q Consensus 283 ~~~a~~~lgv--~p~~~i~VGDs~~Di~aA~~aG~~~i~ 319 (348)
.+..++.+++ .+.+|++|||+.||+.+.+.+|+.+++
T Consensus 186 l~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v~v 224 (225)
T TIGR02461 186 IKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAFLV 224 (225)
T ss_pred HHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcEec
Confidence 5677777765 677999999999999999999998653
No 153
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=97.09 E-value=0.0017 Score=71.73 Aligned_cols=42 Identities=26% Similarity=0.523 Sum_probs=37.9
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcc
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 205 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~ 205 (348)
+++||+.+.|+.|+++|+++.++|+ .....+..+.+.+|+..
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTG---D~~~tA~~ia~~~gi~~ 578 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITG---DNKETAEAICRRIGIFS 578 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecC---CCHHHHHHHHHHcCCCC
Confidence 6899999999999999999999998 35688999999999853
No 154
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.09 E-value=0.0016 Score=62.66 Aligned_cols=45 Identities=13% Similarity=0.015 Sum_probs=32.1
Q ss_pred HHHHHHHcCC--CCCcEEEEecCHhhHHHHHHcCCcEEEECCCCCCcc
Q 018946 283 LRAGAEYAEK--PVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRCITTL 328 (348)
Q Consensus 283 ~~~a~~~lgv--~p~~~i~VGDs~~Di~aA~~aG~~~i~v~~~~~~~~ 328 (348)
.+.+.+.++- .+=.+|.+|||+||+.+.+.+..++|+ +++.....
T Consensus 213 ~~~L~~~y~~~~~~~~tiaLGDspND~~mLe~~D~~vvi-~~~~~~~~ 259 (302)
T PRK12702 213 VQLLLDCYQRHLGPIKALGIGCSPPDLAFLRWSEQKVVL-PSPIADSL 259 (302)
T ss_pred HHHHHHHHHhccCCceEEEecCChhhHHHHHhCCeeEEe-cCCCCCCc
Confidence 4445555443 244899999999999999999998666 55544433
No 155
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=97.07 E-value=0.0011 Score=72.90 Aligned_cols=113 Identities=15% Similarity=0.281 Sum_probs=74.0
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHH
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLA 240 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~ 240 (348)
+++|++.+.++.|+++|+++.++|+ .....+..+.+.+|+.. + .++.+.+.... .++++
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTG---D~~~tA~aIA~~lGI~~--~-~v~~g~~l~~~--------------~~~el- 573 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTG---DNEIVTARICQEVGIDA--N-DFLLGADIEEL--------------SDEEL- 573 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHcCCCC--C-CeeecHhhhhC--------------CHHHH-
Confidence 6799999999999999999999999 46788999999999952 1 12233222110 00100
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCccCCC-CCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEE
Q 018946 241 TEARKAVSAQKQEIAEEVASMLKLSVDIDTS-SPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVV 319 (348)
Q Consensus 241 ~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~-~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~ 319 (348)
.+ + =+...++.. .||.+-.+|.+++ +.| +.+.|+||+.||..|.+.|.+...+
T Consensus 574 ---~~--------~--------~~~~~vfAr~~Pe~K~~iV~~lq----~~G---~vVam~GDGvNDapALk~AdVGIAm 627 (867)
T TIGR01524 574 ---AR--------E--------LRKYHIFARLTPMQKSRIIGLLK----KAG---HTVGFLGDGINDAPALRKADVGISV 627 (867)
T ss_pred ---HH--------H--------hhhCeEEEECCHHHHHHHHHHHH----hCC---CEEEEECCCcccHHHHHhCCEEEEe
Confidence 00 0 011112211 3666666664443 333 5789999999999999999988654
Q ss_pred E
Q 018946 320 M 320 (348)
Q Consensus 320 v 320 (348)
-
T Consensus 628 g 628 (867)
T TIGR01524 628 D 628 (867)
T ss_pred C
Confidence 3
No 156
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=97.00 E-value=0.0017 Score=70.39 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=73.2
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHH
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLA 240 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~ 240 (348)
+++|++.+.++.|+++|+++.++|+ .....+..+.+++|+.+- +++++++.. |+....-.+++
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTG---D~~~tA~~IA~~lGI~~~----~~~~~~l~~--------~~~~~~~~~~~-- 504 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTG---DHLAIAKETARRLGLGTN----IYTADVLLK--------GDNRDDLPSGE-- 504 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECC---CCHHHHHHHHHHcCCCCC----CcCHHHhcC--------CcchhhCCHHH--
Confidence 6899999999999999999999999 467899999999999641 122222211 11000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCccCCC-CCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEE
Q 018946 241 TEARKAVSAQKQEIAEEVASMLKLSVDIDTS-SPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVV 319 (348)
Q Consensus 241 ~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~-~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~ 319 (348)
-+++. ++.++|.. .||.+..+|.+++ +. .+-+.|+||+.||..|.+.|.+...+
T Consensus 505 ----------~~~~~--------~~~~vfAr~~Pe~K~~iV~~lq----~~---G~~VamvGDGvNDapAL~~AdVGIAm 559 (755)
T TIGR01647 505 ----------LGEMV--------EDADGFAEVFPEHKYEIVEILQ----KR---GHLVGMTGDGVNDAPALKKADVGIAV 559 (755)
T ss_pred ----------HHHHH--------HhCCEEEecCHHHHHHHHHHHH----hc---CCEEEEEcCCcccHHHHHhCCeeEEe
Confidence 00111 01111111 3566656654433 33 35799999999999999999988554
No 157
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=96.98 E-value=0.0017 Score=71.72 Aligned_cols=112 Identities=15% Similarity=0.238 Sum_probs=74.8
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHH
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLA 240 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~ 240 (348)
+++|++.+.++.|+++|+++.++|+ .....+..+.+++|+.. ..++++.+...- .++++.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTG---D~~~tA~~IA~~lGI~~---~~v~~G~el~~l--------------~~~el~ 609 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTG---DSELVAAKVCHEVGLDA---GEVLIGSDIETL--------------SDDELA 609 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHcCCCc---cCceeHHHHHhC--------------CHHHHH
Confidence 6899999999999999999999999 56789999999999952 123334333210 011111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCccCCC-CCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEE
Q 018946 241 TEARKAVSAQKQEIAEEVASMLKLSVDIDTS-SPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVV 319 (348)
Q Consensus 241 ~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~-~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~ 319 (348)
+. . ++..++.. .||.+..+|.+++ +.| +-+.|+||+.||..|.++|.+...+
T Consensus 610 ----~~--------~--------~~~~VfAr~sPe~K~~IV~~Lq----~~G---~vVam~GDGvNDaPALk~ADVGIAm 662 (902)
T PRK10517 610 ----NL--------A--------ERTTLFARLTPMHKERIVTLLK----REG---HVVGFMGDGINDAPALRAADIGISV 662 (902)
T ss_pred ----HH--------H--------hhCcEEEEcCHHHHHHHHHHHH----HCC---CEEEEECCCcchHHHHHhCCEEEEe
Confidence 00 0 11122211 3666666664443 333 5689999999999999999987554
No 158
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.0036 Score=69.25 Aligned_cols=120 Identities=20% Similarity=0.272 Sum_probs=79.6
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccch-heeecchhhhhhhcccccccccccCCchhH
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISK-IKIVGNEEVERSLYGQFVLGKGISSGVDEQ 238 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~-~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~ 238 (348)
-||+|++++.++.|+++|+++.++|+ .....+..+.+..|+..--. ..++.+.+... -.+++
T Consensus 546 Dppr~~v~~aI~~l~~AGI~v~MiTG---D~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~--------------l~~~e 608 (917)
T COG0474 546 DPPREDVKEAIEELREAGIKVWMITG---DHVETAIAIAKECGIEAEAESALVIDGAELDA--------------LSDEE 608 (917)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEECC---CCHHHHHHHHHHcCCCCCCCceeEeehHHhhh--------------cCHHH
Confidence 47899999999999999999999999 57899999999999764322 22333333221 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCC-CCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcE
Q 018946 239 LATEARKAVSAQKQEIAEEVASMLKLSVDIDTS-SPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPC 317 (348)
Q Consensus 239 ~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~-~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~ 317 (348)
+... +- +-+ +|-. +|+-+..+|.+++ +.| .-+.|.||+.||..|.+.|.+..
T Consensus 609 l~~~---------------~~---~~~--VfARvsP~qK~~IV~~lq----~~g---~vVamtGDGvNDapALk~ADVGI 661 (917)
T COG0474 609 LAEL---------------VE---ELS--VFARVSPEQKARIVEALQ----KSG---HVVAMTGDGVNDAPALKAADVGI 661 (917)
T ss_pred HHHH---------------hh---hCc--EEEEcCHHHHHHHHHHHH----hCC---CEEEEeCCCchhHHHHHhcCccE
Confidence 1100 10 111 2222 4666766664433 334 67899999999999999999987
Q ss_pred EEECCC
Q 018946 318 VVMRSR 323 (348)
Q Consensus 318 i~v~~~ 323 (348)
.+..++
T Consensus 662 amg~~G 667 (917)
T COG0474 662 AMGGEG 667 (917)
T ss_pred EecccH
Confidence 666533
No 159
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=96.95 E-value=0.0019 Score=71.39 Aligned_cols=112 Identities=14% Similarity=0.185 Sum_probs=74.2
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHH
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLA 240 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~ 240 (348)
+++|++.+.++.|+++|+++.++|+ .....+..+.+.+|+.. ..++++.+...- .++++.
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTG---D~~~tA~aIA~~lGI~~---~~vi~G~el~~~--------------~~~el~ 609 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTG---DNPIVTAKICREVGLEP---GEPLLGTEIEAM--------------DDAALA 609 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECC---CCHHHHHHHHHHcCCCC---CCccchHhhhhC--------------CHHHHH
Confidence 6899999999999999999999999 56789999999999952 122333333210 011111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCccCCC-CCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEE
Q 018946 241 TEARKAVSAQKQEIAEEVASMLKLSVDIDTS-SPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVV 319 (348)
Q Consensus 241 ~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~-~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~ 319 (348)
+. =++..++.. +||-+-.+|.+++ +. -+-+.|+||+.||..|.+.|.+...+
T Consensus 610 ----~~----------------v~~~~VfAr~sPe~K~~iV~~Lq----~~---G~vVamtGDGvNDaPALk~ADVGIAm 662 (903)
T PRK15122 610 ----RE----------------VEERTVFAKLTPLQKSRVLKALQ----AN---GHTVGFLGDGINDAPALRDADVGISV 662 (903)
T ss_pred ----HH----------------hhhCCEEEEeCHHHHHHHHHHHH----hC---CCEEEEECCCchhHHHHHhCCEEEEe
Confidence 00 011122211 3666666664443 33 35789999999999999999987443
No 160
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=96.85 E-value=0.015 Score=50.99 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=30.4
Q ss_pred CCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHc
Q 018946 162 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKL 201 (348)
Q Consensus 162 l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~l 201 (348)
.+||+.++...+.++|+++..+|+.........+..+..+
T Consensus 28 ~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~ 67 (157)
T PF08235_consen 28 THPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQH 67 (157)
T ss_pred hhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHH
Confidence 4789999999999999999999996433334455555554
No 161
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.0066 Score=53.62 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=31.8
Q ss_pred HHHHcCCCCCcEEEEecCH-hhHHHHHHcCCcEEEECCCCCCcc
Q 018946 286 GAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPCVVMRSRCITTL 328 (348)
Q Consensus 286 a~~~lgv~p~~~i~VGDs~-~Di~aA~~aG~~~i~v~~~~~~~~ 328 (348)
+.+...++ ++++|+. +-++.|+++|++++.+++++++..
T Consensus 129 ~vrth~id----lf~ed~~~na~~iAk~~~~~vilins~ynRkp 168 (194)
T COG5663 129 AVRTHNID----LFFEDSHDNAGQIAKNAGIPVILINSPYNRKP 168 (194)
T ss_pred hhHhhccC----ccccccCchHHHHHHhcCCcEEEecCcccccc
Confidence 34677777 8999985 568888889999999999887643
No 162
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=96.84 E-value=0.0035 Score=70.29 Aligned_cols=115 Identities=15% Similarity=0.211 Sum_probs=73.3
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccc---------hheeecchhhhhhhcccccccccc
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERIS---------KIKIVGNEEVERSLYGQFVLGKGI 231 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f---------~~~i~~~~e~~~~~~~~~v~g~~v 231 (348)
+++|++.+.|+.|+++|+++.++|+ .....+..+.+.+|+..-. +..++++.+...
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTG---D~~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~------------ 710 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTG---DFPETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDA------------ 710 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECC---CCHHHHHHHHHHcCCCCccccccccccccceeeehHHhhh------------
Confidence 7899999999999999999999999 4678899999999995311 112222222211
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCC-CCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHH
Q 018946 232 SSGVDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTS-SPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGA 310 (348)
Q Consensus 232 ~~~~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~-~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA 310 (348)
-.+++ -.++ .....++.. +|+.+-.+|.+++ +. .+.+.|+||+.||..|.
T Consensus 711 --l~~~~------------l~~~--------~~~~~V~ar~sP~~K~~iV~~lq----~~---g~~Vam~GDGvNDapaL 761 (1053)
T TIGR01523 711 --LSDEE------------VDDL--------KALCLVIARCAPQTKVKMIEALH----RR---KAFCAMTGDGVNDSPSL 761 (1053)
T ss_pred --cCHHH------------HHHH--------hhcCeEEEecCHHHHHHHHHHHH----hc---CCeeEEeCCCcchHHHH
Confidence 00000 0011 111122211 3555555554333 33 35689999999999999
Q ss_pred HHcCCcEEE
Q 018946 311 QRIGMPCVV 319 (348)
Q Consensus 311 ~~aG~~~i~ 319 (348)
+.|++...+
T Consensus 762 k~AdVGIAm 770 (1053)
T TIGR01523 762 KMANVGIAM 770 (1053)
T ss_pred HhCCccEec
Confidence 999987654
No 163
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=96.72 E-value=0.0041 Score=69.01 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=74.6
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHH
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLA 240 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~ 240 (348)
+++|++.+.++.|+++|+++.++|+ .....+..+.+.+|+..--. .++.+.+...- .+++
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTG---D~~~tA~~iA~~~GI~~~~~-~vi~G~~~~~l--------------~~~e-- 638 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTG---DNIDTAKAIARNCGILTFGG-LAMEGKEFRRL--------------VYEE-- 638 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECC---CChHHHHHHHHHcCCCCCCc-eEeeHHHhhhC--------------CHHH--
Confidence 7899999999999999999999999 46789999999999963211 22333332210 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCccCCC-CCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEE
Q 018946 241 TEARKAVSAQKQEIAEEVASMLKLSVDIDTS-SPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVV 319 (348)
Q Consensus 241 ~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~-~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~ 319 (348)
-+ ++ -++..++.. +||-+..+|.+++ +.| +-+.|+||+.||..|.++|.+...+
T Consensus 639 --l~--------~~--------i~~~~Vfar~sPe~K~~iV~~lq----~~g---~vVam~GDGvNDapALk~AdVGIAm 693 (941)
T TIGR01517 639 --MD--------PI--------LPKLRVLARSSPLDKQLLVLMLK----DMG---EVVAVTGDGTNDAPALKLADVGFSM 693 (941)
T ss_pred --HH--------HH--------hccCeEEEECCHHHHHHHHHHHH----HCC---CEEEEECCCCchHHHHHhCCcceec
Confidence 00 11 111222211 3666666664443 333 4789999999999999999887554
No 164
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=96.53 E-value=0.012 Score=54.90 Aligned_cols=88 Identities=17% Similarity=0.334 Sum_probs=55.7
Q ss_pred eEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHHhhHHHHHHHHHhcCCCCCCC
Q 018946 85 LAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRKNALDEFLASKDAPLRP 164 (348)
Q Consensus 85 kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 164 (348)
++|+.|+|.|++|..++ +.|+. ..+.. ++. .-+...+......+.|
T Consensus 80 ~aVvlDlDETvLdNs~Y---qgy~v---~nnk~---f~p-------------------------e~Wd~wV~a~~sk~vp 125 (274)
T COG2503 80 KAVVLDLDETVLDNSAY---QGYQV---LNNKG---FTP-------------------------ETWDKWVQAKKSKAVP 125 (274)
T ss_pred ceEEEecchHhhcCccc---cchhh---hcCCC---CCc-------------------------cchHHHHhhcccccCc
Confidence 49999999999998875 22221 11221 111 1122222333457899
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCCCCC-chHHHHHHHHcCCccc
Q 018946 165 GVEDFVDDAYNEGIPLIVLTAYGKSG-DRIARSVVEKLGSERI 206 (348)
Q Consensus 165 Gv~elL~~Lk~~Gi~vaIvTn~~~~~-~~~~~~il~~lgl~~~ 206 (348)
|+.||++..-++|..|..+||...+. ......-+.++|+...
T Consensus 126 GA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~ 168 (274)
T COG2503 126 GAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQV 168 (274)
T ss_pred cHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccc
Confidence 99999999999999999999975422 2223344556677543
No 165
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=96.48 E-value=0.025 Score=51.49 Aligned_cols=40 Identities=20% Similarity=0.393 Sum_probs=35.2
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCc
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 204 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~ 204 (348)
-.+|++.+||+.+.+ .+.|+|-|++ ...++..+++.+|+.
T Consensus 45 ~kRP~l~eFL~~~~~-~feIvVwTAa---~~~ya~~~l~~l~~~ 84 (195)
T TIGR02245 45 LMRPYLHEFLTSAYE-DYDIVIWSAT---SMKWIEIKMTELGVL 84 (195)
T ss_pred EeCCCHHHHHHHHHh-CCEEEEEecC---CHHHHHHHHHHhccc
Confidence 359999999999999 5999999996 578999999998864
No 166
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=96.44 E-value=0.0086 Score=56.11 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEEC
Q 018946 281 AALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 321 (348)
Q Consensus 281 ~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~ 321 (348)
.+++.+++++|++++++++|||+.||+.+.+.+|..+++-+
T Consensus 199 ~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~N 239 (270)
T PRK10513 199 TGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGN 239 (270)
T ss_pred HHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecC
Confidence 34899999999999999999999999999999999766543
No 167
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=96.38 E-value=0.023 Score=63.93 Aligned_cols=42 Identities=19% Similarity=0.365 Sum_probs=38.0
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCc
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 204 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~ 204 (348)
-+++|++.+.|+.|+++|+++.++|+ .....+..+.+..|+-
T Consensus 655 d~lr~~~~~~I~~l~~agi~v~miTG---D~~~TA~~iA~~~gii 696 (1054)
T TIGR01657 655 NPLKPDTKEVIKELKRASIRTVMITG---DNPLTAVHVARECGIV 696 (1054)
T ss_pred cCCCccHHHHHHHHHHCCCeEEEECC---CCHHHHHHHHHHcCCC
Confidence 36899999999999999999999999 4678888999999994
No 168
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=96.33 E-value=0.0073 Score=56.27 Aligned_cols=42 Identities=7% Similarity=-0.045 Sum_probs=38.1
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEECCCC
Q 018946 283 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRC 324 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~~~~ 324 (348)
++.+++++|+++++|++|||+.||+.++..+|...|.+.+..
T Consensus 172 l~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~na~ 213 (249)
T TIGR01485 172 LQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSNAQ 213 (249)
T ss_pred HHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEECCCH
Confidence 789999999999999999999999999999888888887643
No 169
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=96.26 E-value=0.0088 Score=66.84 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=37.3
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCc
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 204 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~ 204 (348)
+++|++.+.|+.|+++|+++.++|+- ....+..+.+.+|+.
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd---~~~ta~~ia~~~gi~ 608 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGD---HPITAKAIAKGVGII 608 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCC---CHHHHHHHHHHcCCC
Confidence 78999999999999999999999994 567889999999984
No 170
>PRK10976 putative hydrolase; Provisional
Probab=96.25 E-value=0.0042 Score=58.14 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEEC
Q 018946 282 ALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 321 (348)
Q Consensus 282 ~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~ 321 (348)
+++.+++++|++++++++|||+.||+.|.+.+|..+++-+
T Consensus 194 al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~N 233 (266)
T PRK10976 194 ALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGN 233 (266)
T ss_pred HHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecC
Confidence 4899999999999999999999999999999999866554
No 171
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=96.18 E-value=0.005 Score=57.73 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=15.9
Q ss_pred CCceEEEEecCCccccccc
Q 018946 82 PRDLAVLLEVDGVLVDAYR 100 (348)
Q Consensus 82 ~~~kaviFDvDGTL~d~~~ 100 (348)
|.+|.|+||+||||++...
T Consensus 1 m~~kli~~DlDGTLl~~~~ 19 (270)
T PRK10513 1 MAIKLIAIDMDGTLLLPDH 19 (270)
T ss_pred CceEEEEEecCCcCcCCCC
Confidence 4578999999999998653
No 172
>PRK10976 putative hydrolase; Provisional
Probab=96.08 E-value=0.015 Score=54.33 Aligned_cols=34 Identities=12% Similarity=0.102 Sum_probs=21.1
Q ss_pred HHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCc
Q 018946 168 DFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 204 (348)
Q Consensus 168 elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~ 204 (348)
+.|++++++|++++++|+. ....+..+++.+|++
T Consensus 26 ~ai~~l~~~G~~~~iaTGR---~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 26 ETLKLLTARGIHFVFATGR---HHVDVGQIRDNLEIK 59 (266)
T ss_pred HHHHHHHHCCCEEEEEcCC---ChHHHHHHHHhcCCC
Confidence 3556667777777777774 334455566666664
No 173
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.07 E-value=0.015 Score=63.00 Aligned_cols=42 Identities=31% Similarity=0.497 Sum_probs=38.2
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcc
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 205 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~ 205 (348)
+++||+...+..||+.|++++++|+ ..+..++++.+.+|++.
T Consensus 723 ~vr~~a~~av~~Lk~~Gi~v~mLTG---Dn~~aA~svA~~VGi~~ 764 (951)
T KOG0207|consen 723 QVRPDAALAVAELKSMGIKVVMLTG---DNDAAARSVAQQVGIDN 764 (951)
T ss_pred ccchhHHHHHHHHHhcCceEEEEcC---CCHHHHHHHHHhhCcce
Confidence 5799999999999999999999999 56889999999999654
No 174
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=96.00 E-value=0.055 Score=51.43 Aligned_cols=45 Identities=16% Similarity=0.258 Sum_probs=33.6
Q ss_pred CCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCccc
Q 018946 162 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI 206 (348)
Q Consensus 162 l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~ 206 (348)
+.||+.++|+.|+++|++++++||............++.+|+...
T Consensus 19 ~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~ 63 (279)
T TIGR01452 19 VVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGL 63 (279)
T ss_pred eCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC
Confidence 578999999999999999999999542223344456677888643
No 175
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=95.98 E-value=0.019 Score=61.69 Aligned_cols=121 Identities=18% Similarity=0.207 Sum_probs=75.1
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccch---heeecchhhhhhhcccccccccccCCch
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISK---IKIVGNEEVERSLYGQFVLGKGISSGVD 236 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~---~~i~~~~e~~~~~~~~~v~g~~v~~~~~ 236 (348)
-||||++.+.++.|+++|++|..+|+ .....+..+.++.|+-..-+ ....++.+.-. =.+
T Consensus 583 DPPR~ev~~ai~~c~~aGIrV~mITG---D~~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~--------------ls~ 645 (972)
T KOG0202|consen 583 DPPRPEVADAIELCRQAGIRVIMITG---DNKETAEAIAREIGIFSEDEDVSSMALTGSEFDD--------------LSD 645 (972)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEEcC---CCHHHHHHHHHHhCCCcCCccccccccchhhhhc--------------CCH
Confidence 37899999999999999999999999 46789999999999743222 12222222110 001
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc-CCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCC
Q 018946 237 EQLATEARKAVSAQKQEIAEEVASMLKLSVDI-DTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGM 315 (348)
Q Consensus 237 ~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i-~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~ 315 (348)
++ ++-+ +..+.+ +--+|.-+-++|.+ +++. .+=+.|-||+.||-.|.+.|.+
T Consensus 646 ~~-------------~~~~-------~~~~~vFaR~~P~HK~kIVea----Lq~~---geivAMTGDGVNDApALK~AdI 698 (972)
T KOG0202|consen 646 EE-------------LDDA-------VRRVLVFARAEPQHKLKIVEA----LQSR---GEVVAMTGDGVNDAPALKKADI 698 (972)
T ss_pred HH-------------HHHH-------hhcceEEEecCchhHHHHHHH----HHhc---CCEEEecCCCccchhhhhhccc
Confidence 11 1000 111111 01135556666633 3333 3568899999999999999988
Q ss_pred cEEEECCCC
Q 018946 316 PCVVMRSRC 324 (348)
Q Consensus 316 ~~i~v~~~~ 324 (348)
...+=.+|.
T Consensus 699 GIAMG~~GT 707 (972)
T KOG0202|consen 699 GIAMGISGT 707 (972)
T ss_pred ceeecCCcc
Confidence 765543443
No 176
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=95.95 E-value=0.0078 Score=56.07 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=35.7
Q ss_pred HHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEE
Q 018946 282 ALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVM 320 (348)
Q Consensus 282 ~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v 320 (348)
+++.+++++|++++++++|||+.||+.++..+|+.+++-
T Consensus 192 ~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~ 230 (256)
T TIGR00099 192 ALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMG 230 (256)
T ss_pred HHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEec
Confidence 388999999999999999999999999999999986664
No 177
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=95.89 E-value=0.027 Score=47.75 Aligned_cols=27 Identities=7% Similarity=0.047 Sum_probs=23.4
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCC
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYG 187 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~ 187 (348)
++.+++.+.|+.++++|+.++++|+..
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~ 50 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRN 50 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 367788899999999999999999863
No 178
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.84 E-value=0.12 Score=47.99 Aligned_cols=44 Identities=20% Similarity=0.294 Sum_probs=34.8
Q ss_pred hcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCC
Q 018946 156 ASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGS 203 (348)
Q Consensus 156 ~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl 203 (348)
.+....+.||+.+.|..|.+. ++-+|+|. |....++++...+|+
T Consensus 78 sE~sa~lvPgA~etm~~l~~~-~tp~v~ST---SY~qy~~r~a~~ig~ 121 (315)
T COG4030 78 SELSAKLVPGAEETMATLQER-WTPVVIST---SYTQYLRRTASMIGV 121 (315)
T ss_pred HHhhcccCCChHHHHHHHhcc-CCceEEec---cHHHHHHHHHHhcCC
Confidence 344578999999999999887 55555555 368999999999988
No 179
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.76 E-value=0.028 Score=53.12 Aligned_cols=47 Identities=11% Similarity=-0.059 Sum_probs=39.4
Q ss_pred CchhhHHHHHHHHHHHHcCC---CCCcEEEEecCHhhHHHHHHcCCcEEEE
Q 018946 273 PESLDKIVAALRAGAEYAEK---PVRNCFLIAGSQSGVAGAQRIGMPCVVM 320 (348)
Q Consensus 273 ~~~~~~~~~~~~~a~~~lgv---~p~~~i~VGDs~~Di~aA~~aG~~~i~v 320 (348)
|..-.|.. +++.+++++|+ ++++++.|||+.||+.|.+.+|..+++-
T Consensus 183 ~~g~sKg~-al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~~ag~gvAM~ 232 (271)
T PRK03669 183 DASAGKDQ-AANWLIATYQQLSGTRPTTLGLGDGPNDAPLLDVMDYAVVVK 232 (271)
T ss_pred cCCCCHHH-HHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHHhCCEEEEec
Confidence 33444554 38999999999 9999999999999999999999876664
No 180
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.74 E-value=0.011 Score=55.74 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=15.8
Q ss_pred CCceEEEEecCCccccccc
Q 018946 82 PRDLAVLLEVDGVLVDAYR 100 (348)
Q Consensus 82 ~~~kaviFDvDGTL~d~~~ 100 (348)
..+++|++|+||||++...
T Consensus 5 ~~~~lI~~DlDGTLL~~~~ 23 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHT 23 (271)
T ss_pred CCCeEEEEeCccCCcCCCC
Confidence 3567999999999998654
No 181
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=95.67 E-value=0.012 Score=52.72 Aligned_cols=36 Identities=11% Similarity=0.020 Sum_probs=33.8
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEE
Q 018946 283 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 318 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i 318 (348)
++.++++++++++++++|||+.+|+.++..+|+.++
T Consensus 168 ~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~va 203 (204)
T TIGR01484 168 LQALLKELNGKRDEILAFGDSGNDEEMFEVAGLAVA 203 (204)
T ss_pred HHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCceE
Confidence 788899999999999999999999999999999865
No 182
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=95.65 E-value=0.014 Score=52.87 Aligned_cols=47 Identities=15% Similarity=0.180 Sum_probs=38.7
Q ss_pred CchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEE
Q 018946 273 PESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVM 320 (348)
Q Consensus 273 ~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v 320 (348)
|....|.. +++.+++.+|++++++++|||+.||+.+.+.+|..+++=
T Consensus 182 ~~~vsK~~-ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~ 228 (254)
T PF08282_consen 182 PKGVSKGS-AIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMG 228 (254)
T ss_dssp ETTSSHHH-HHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEET
T ss_pred eCCCCHHH-HHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEc
Confidence 33444444 378889999999999999999999999999999985543
No 183
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=95.62 E-value=0.0096 Score=54.89 Aligned_cols=39 Identities=13% Similarity=0.080 Sum_probs=34.9
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEECC
Q 018946 283 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRS 322 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~~ 322 (348)
++.+++++|++++++++|||+.||+.++..+|...+ +.+
T Consensus 164 l~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~ia-v~n 202 (236)
T TIGR02471 164 LRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVV-VGN 202 (236)
T ss_pred HHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEE-EcC
Confidence 789999999999999999999999999999997765 444
No 184
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=95.59 E-value=0.0055 Score=59.86 Aligned_cols=126 Identities=15% Similarity=0.116 Sum_probs=73.5
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHc---CCcccchheeecchhhhhhhccccccccc-ccCCchhH
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKL---GSERISKIKIVGNEEVERSLYGQFVLGKG-ISSGVDEQ 238 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~l---gl~~~f~~~i~~~~e~~~~~~~~~v~g~~-v~~~~~~~ 238 (348)
.|....+++.|+++|.++.++||+ +-..+...++.+ .+.++||++|+-.+.- .+|+ .+. ....-++.
T Consensus 242 ~~ql~~fl~kL~~~GKklFLiTNS---PysFVd~GM~flvG~~WRdlFDVVIvqA~KP--~Fft----de~rPfR~~dek 312 (510)
T KOG2470|consen 242 NPQLLAFLRKLKDHGKKLFLITNS---PYSFVDKGMRFLVGDDWRDLFDVVIVQANKP--EFFT----DERRPFRKYDEK 312 (510)
T ss_pred cHHHHHHHHHHHHhcCcEEEEeCC---chhhhhcCceeeeCccHHhhhheeEEecCCC--cccc----cccCcchhhccc
Confidence 456778999999999999999995 445555555543 4568899887644321 1111 110 00000000
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHH-Hc
Q 018946 239 ---LATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQ-RI 313 (348)
Q Consensus 239 ---~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~-~Di~aA~-~a 313 (348)
+. -.|...-+|++|| -+. .+...++--|+...+++++||+. +|+.... ++
T Consensus 313 ~~sl~--wdkv~klekgkiY----------y~G-------------~l~~flelt~WrG~~VlYFGDHlySDLad~tlkh 367 (510)
T KOG2470|consen 313 RGSLL--WDKVDKLEKGKIY----------YQG-------------NLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKH 367 (510)
T ss_pred ccchh--hhhhhhcccCcee----------eec-------------cHHHHHHHhccCCCeeEEecCcchhhhhhhHhhc
Confidence 00 0111222233332 111 04455566678889999999996 7988777 99
Q ss_pred CCcEEEECC
Q 018946 314 GMPCVVMRS 322 (348)
Q Consensus 314 G~~~i~v~~ 322 (348)
||.|-.+-.
T Consensus 368 gWRTgAII~ 376 (510)
T KOG2470|consen 368 GWRTGAIIP 376 (510)
T ss_pred ccccccchH
Confidence 998876654
No 185
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=95.41 E-value=0.056 Score=60.86 Aligned_cols=41 Identities=22% Similarity=0.183 Sum_probs=35.9
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCc
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 204 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~ 204 (348)
+++|||.+.|+.|+++|+++.++|+ .....+..+....|+-
T Consensus 631 ~lq~~v~etI~~L~~AGIkv~mlTG---D~~~TA~~IA~~~~ii 671 (1057)
T TIGR01652 631 KLQEGVPETIELLRQAGIKIWVLTG---DKVETAINIGYSCRLL 671 (1057)
T ss_pred hhhhccHHHHHHHHHCCCeEEEEcC---CcHHHHHHHHHHhCCC
Confidence 6899999999999999999999999 4567778887778874
No 186
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=95.26 E-value=0.087 Score=54.18 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=35.9
Q ss_pred HHHHHHHCCCcEEEEeCCCCCCchHHHHHHHH-cCCcccchheeecch-hhh-hhhcccccccc
Q 018946 169 FVDDAYNEGIPLIVLTAYGKSGDRIARSVVEK-LGSERISKIKIVGNE-EVE-RSLYGQFVLGK 229 (348)
Q Consensus 169 lL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~-lgl~~~f~~~i~~~~-e~~-~~~~~~~v~g~ 229 (348)
.++..+..| +++|+|. +++..++..++. +|.+.. +|.+ ++. .+.+++.+.|.
T Consensus 101 ~~~~~~~~g-~~vVVTA---sPrvmVEpFake~LG~D~V-----vGTEL~v~~~G~~TG~~~G~ 155 (498)
T PLN02499 101 AWKVFSSCD-KRVVVTR---MPRVMVERFAKEHLRADEV-----IGSELVVNRFGFATGFIRGT 155 (498)
T ss_pred HHHHHHcCC-eEEEEeC---CHHHHHHHHHHHhcCCceE-----EeeeEEEeeccEEEEEEecC
Confidence 556667788 9999998 588999999998 888753 2332 233 25566666554
No 187
>PRK10444 UMP phosphatase; Provisional
Probab=95.18 E-value=0.34 Score=45.51 Aligned_cols=50 Identities=20% Similarity=0.402 Sum_probs=37.6
Q ss_pred CCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchhee
Q 018946 162 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKI 211 (348)
Q Consensus 162 l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i 211 (348)
+.||+.++|+.|+++|++++++||............++.+|+.--.+.++
T Consensus 18 ~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ 67 (248)
T PRK10444 18 AVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFY 67 (248)
T ss_pred eCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEe
Confidence 57899999999999999999999976544455566667788853333333
No 188
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=95.14 E-value=0.051 Score=51.09 Aligned_cols=63 Identities=30% Similarity=0.497 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecc
Q 018946 148 KNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGN 214 (348)
Q Consensus 148 ~~~~~~~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~ 214 (348)
+..+.+.+.+..+.+|+|+.++++.|.++++|+.|+|+| ....+..+++..|.- +....++++
T Consensus 77 k~~i~~~V~~s~i~LRdg~~~~f~~L~~~~IP~lIFSAG---lgdvI~~vL~q~~~~-~~Nv~VvSN 139 (246)
T PF05822_consen 77 KSEIEEAVKESDIMLRDGVEEFFDKLEEHNIPLLIFSAG---LGDVIEEVLRQAGVF-HPNVKVVSN 139 (246)
T ss_dssp GGGHHHHHHCS---B-BTHHHHHHHHHCTT--EEEEEEE---EHHHHHHHHHHTT---BTTEEEEEE
T ss_pred HHHHHHHHHhcchhhhcCHHHHHHHHHhcCCCEEEEeCC---cHHHHHHHHHHcCCC-CCCeEEEee
Confidence 456777777777899999999999999999999999997 578899999987542 123334444
No 189
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=95.14 E-value=0.024 Score=52.92 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=36.3
Q ss_pred HHHHHHHcCCC--CCcEEEEecCHhhHHHHHHcCCcEEEECC
Q 018946 283 LRAGAEYAEKP--VRNCFLIAGSQSGVAGAQRIGMPCVVMRS 322 (348)
Q Consensus 283 ~~~a~~~lgv~--p~~~i~VGDs~~Di~aA~~aG~~~i~v~~ 322 (348)
.+.+++++|++ .+++++|||+.||+.+.+.+|..+++-+.
T Consensus 181 i~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~vam~Na 222 (256)
T TIGR01486 181 ANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPGP 222 (256)
T ss_pred HHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCEEEEeCCC
Confidence 78889999999 99999999999999999999998776553
No 190
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=95.01 E-value=0.049 Score=50.77 Aligned_cols=41 Identities=7% Similarity=-0.070 Sum_probs=36.4
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHc-------CCcEEEECCC
Q 018946 283 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRI-------GMPCVVMRSR 323 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~a-------G~~~i~v~~~ 323 (348)
++.++++++..++++++|||+.+|+.+++.+ |..+|.|..+
T Consensus 172 ~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g 219 (244)
T TIGR00685 172 VKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSG 219 (244)
T ss_pred HHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecC
Confidence 7888999999999999999999999999998 7778888533
No 191
>PLN02887 hydrolase family protein
Probab=94.80 E-value=0.029 Score=59.08 Aligned_cols=40 Identities=5% Similarity=0.006 Sum_probs=35.9
Q ss_pred HHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEEC
Q 018946 282 ALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMR 321 (348)
Q Consensus 282 ~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~ 321 (348)
+++.+++++|++++++++|||+.||+.|.+.+|..+++-+
T Consensus 511 ALk~L~e~lGI~~eeviAFGDs~NDIeMLe~AG~gVAMgN 550 (580)
T PLN02887 511 GVKMLLNHLGVSPDEIMAIGDGENDIEMLQLASLGVALSN 550 (580)
T ss_pred HHHHHHHHcCCCHHHEEEEecchhhHHHHHHCCCEEEeCC
Confidence 3899999999999999999999999999999999755543
No 192
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=94.75 E-value=0.19 Score=51.85 Aligned_cols=40 Identities=28% Similarity=0.514 Sum_probs=36.0
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCC
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGS 203 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl 203 (348)
+++|++.+.++.|++.|+++.++|+ .....+..+-+.+|+
T Consensus 347 ~lr~~~~~~i~~l~~~gi~~~~ltG---D~~~~a~~ia~~lgi 386 (499)
T TIGR01494 347 PLRDDAKETISELREAGIRVIMLTG---DNVLTAKAIAKELGI 386 (499)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEcC---CCHHHHHHHHHHcCc
Confidence 6899999999999999999999999 467888888888886
No 193
>PLN02887 hydrolase family protein
Probab=94.50 E-value=0.082 Score=55.75 Aligned_cols=34 Identities=9% Similarity=0.246 Sum_probs=25.8
Q ss_pred HHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCc
Q 018946 168 DFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 204 (348)
Q Consensus 168 elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~ 204 (348)
+.|++++++|+.++|+|+. ....+..+++.+++.
T Consensus 332 eAI~kl~ekGi~~vIATGR---~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 332 KALKEALSRGVKVVIATGK---ARPAVIDILKMVDLA 365 (580)
T ss_pred HHHHHHHHCCCeEEEEcCC---CHHHHHHHHHHhCcc
Confidence 4678888889999999985 445566777777764
No 194
>PLN03190 aminophospholipid translocase; Provisional
Probab=94.38 E-value=0.24 Score=56.48 Aligned_cols=40 Identities=25% Similarity=0.249 Sum_probs=33.5
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCC
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGS 203 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl 203 (348)
++++|+.+.++.|+++|+++.++|+- ....+..+....|+
T Consensus 726 ~lr~~v~~~I~~l~~agi~v~mlTGD---~~~tAi~IA~s~~L 765 (1178)
T PLN03190 726 KLQQGVPEAIESLRTAGIKVWVLTGD---KQETAISIGYSSKL 765 (1178)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCC---CHHHHHHHHHHhCC
Confidence 68999999999999999999999993 45666666666665
No 195
>PLN02382 probable sucrose-phosphatase
Probab=93.76 E-value=0.11 Score=52.54 Aligned_cols=42 Identities=12% Similarity=-0.068 Sum_probs=36.5
Q ss_pred HHHHHHHc---CCCCCcEEEEecCHhhHHHHHHcCCcEEEECCCC
Q 018946 283 LRAGAEYA---EKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRC 324 (348)
Q Consensus 283 ~~~a~~~l---gv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~~~~ 324 (348)
++.+++++ |+++++++++||+.||+.+...+|...|.+.+..
T Consensus 180 l~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam~NA~ 224 (413)
T PLN02382 180 LAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMVSNAQ 224 (413)
T ss_pred HHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEEcCCc
Confidence 78888998 9999999999999999999999996666666543
No 196
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=93.15 E-value=0.62 Score=45.41 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=21.2
Q ss_pred cCCCCccCCCCCCCCCCCCCceEEEEecCCcccccc
Q 018946 64 VNPFSAFSSSSGHDSQNPPRDLAVLLEVDGVLVDAY 99 (348)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~kaviFDvDGTL~d~~ 99 (348)
.++++.+|...+ ..++ ...-++.||+||||+...
T Consensus 17 r~~~~kf~~~~s-~~ss-~~~fgfafDIDGVL~RG~ 50 (389)
T KOG1618|consen 17 RPPMRKFISEIS-FESS-PPTFGFAFDIDGVLFRGH 50 (389)
T ss_pred CCchhhhhcccC-CCCC-CCceeEEEecccEEEecC
Confidence 455665654433 2233 334499999999998744
No 197
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=93.00 E-value=0.098 Score=45.11 Aligned_cols=48 Identities=19% Similarity=0.504 Sum_probs=37.5
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCC-cccchhee
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGS-ERISKIKI 211 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl-~~~f~~~i 211 (348)
+.++||+.+||+.+.+. +.++|.|.+ ...+++.+++.+.. ..+|+.++
T Consensus 35 v~~RP~l~~FL~~l~~~-~ev~i~T~~---~~~ya~~v~~~ldp~~~~~~~~~ 83 (159)
T PF03031_consen 35 VKLRPGLDEFLEELSKH-YEVVIWTSA---SEEYAEPVLDALDPNGKLFSRRL 83 (159)
T ss_dssp EEE-TTHHHHHHHHHHH-CEEEEE-SS----HHHHHHHHHHHTTTTSSEEEEE
T ss_pred EeeCchHHHHHHHHHHh-ceEEEEEee---hhhhhhHHHHhhhhhcccccccc
Confidence 55799999999999665 999999996 57899999999987 46665554
No 198
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=92.95 E-value=0.38 Score=50.68 Aligned_cols=140 Identities=16% Similarity=0.259 Sum_probs=88.6
Q ss_pred ceEEEEecCCccccccccChHHHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHHhhHHHHHHHHHhcCCCCCC
Q 018946 84 DLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNRKNALDEFLASKDAPLR 163 (348)
Q Consensus 84 ~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 163 (348)
.+.||-|+||||+.++.+ -+++-..|.+ |+ .
T Consensus 530 ~kIVISDIDGTITKSDvL------Gh~lp~iGkD---WT----------------------------------------h 560 (738)
T KOG2116|consen 530 DKIVISDIDGTITKSDVL------GHVLPMIGKD---WT----------------------------------------H 560 (738)
T ss_pred CcEEEecCCCceEhhhhh------hhhhhhhcCc---ch----------------------------------------h
Confidence 469999999999998876 4455555665 31 2
Q ss_pred CcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcc--cchheeecchhhhhhhcccccccccccCCchhHHHH
Q 018946 164 PGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER--ISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLAT 241 (348)
Q Consensus 164 pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~--~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~~ 241 (348)
-||.+|...++++||++..+|+.........+..|..+..+. +.+..++ +..+++... +++
T Consensus 561 ~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LPdGPVi-------------LSPd~lf~A----l~R 623 (738)
T KOG2116|consen 561 TGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLPDGPVI-------------LSPDSLFAA----LHR 623 (738)
T ss_pred hhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCCCCCEE-------------eCCCcchHH----HHH
Confidence 377788889999999999999865555566677777665542 2222211 112222222 333
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCc-EEEEecCHhhHHHHHHcCCc
Q 018946 242 EARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRN-CFLIAGSQSGVAGAQRIGMP 316 (348)
Q Consensus 242 ~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~-~i~VGDs~~Di~aA~~aG~~ 316 (348)
|-.. +||..- .||++.-+.+-+.-+.+- -.-||...+|+-+=+++|++
T Consensus 624 EVI~----------------RkPe~F-----------KIAcL~DIk~LF~p~~nPFYAgFGNR~TDviSY~~VgVP 672 (738)
T KOG2116|consen 624 EVIE----------------RKPEVF-----------KIACLTDIKNLFPPSGNPFYAGFGNRITDVISYRQVGVP 672 (738)
T ss_pred HHHH----------------cCchhh-----------hHHHHHHHHHhcCCCCCceeeecCCCcccceeeeeecCC
Confidence 3322 233322 356677777777722222 34578899999999999995
No 199
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=92.82 E-value=0.3 Score=45.99 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=39.9
Q ss_pred CCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecc
Q 018946 162 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGN 214 (348)
Q Consensus 162 l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~ 214 (348)
+.||+.++|+.|+++|++++++||.+..........++.+|++--.+.++.++
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts~ 74 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPA 74 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcHH
Confidence 57899999999999999999999975433345777788899874344444333
No 200
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=92.40 E-value=1.3 Score=38.88 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=32.5
Q ss_pred CCCCcEEEEecCH-hhHHHHHHcCCcEEEECCCCCCcc
Q 018946 292 KPVRNCFLIAGSQ-SGVAGAQRIGMPCVVMRSRCITTL 328 (348)
Q Consensus 292 v~p~~~i~VGDs~-~Di~aA~~aG~~~i~v~~~~~~~~ 328 (348)
..+++++||||.. .||..|...|...||...+.....
T Consensus 137 ~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv~~~~ 174 (190)
T KOG2961|consen 137 CTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGVRAEE 174 (190)
T ss_pred CChhHeEEEccchhhhHhhhhhccceeEEecccccccc
Confidence 6789999999985 799999999999999998776544
No 201
>PTZ00174 phosphomannomutase; Provisional
Probab=92.40 E-value=0.11 Score=48.34 Aligned_cols=36 Identities=6% Similarity=-0.052 Sum_probs=30.9
Q ss_pred HHHHHHHcCCCCCcEEEEec----CHhhHHHHHHcCCcEEEECC
Q 018946 283 LRAGAEYAEKPVRNCFLIAG----SQSGVAGAQRIGMPCVVMRS 322 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGD----s~~Di~aA~~aG~~~i~v~~ 322 (348)
++.++++ +++++.||| +.||+.|.+.+|...+.|.+
T Consensus 193 l~~L~~~----~~eviafGD~~~~~~NDieMl~~~~~~g~~v~n 232 (247)
T PTZ00174 193 LRHLEND----FKEIHFFGDKTFEGGNDYEIYNDPRTIGHSVKN 232 (247)
T ss_pred HHHHHhh----hhhEEEEcccCCCCCCcHhhhhcCCCceEEeCC
Confidence 6666666 699999999 89999999999998888873
No 202
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=92.23 E-value=0.29 Score=49.72 Aligned_cols=107 Identities=11% Similarity=0.118 Sum_probs=76.6
Q ss_pred CcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHHHHH
Q 018946 164 PGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATEA 243 (348)
Q Consensus 164 pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~~~~ 243 (348)
-...++.+.+...|.+|.++|.-=- +..+++.++...|.+-.--.+..+++....
T Consensus 102 ~~~~eL~e~ai~n~krVIlISDMYl-ps~Il~~~L~s~g~d~~nipiY~S~e~rl~------------------------ 156 (635)
T COG5610 102 KKNIELVEEAIKNEKRVILISDMYL-PSSILRTFLNSFGPDFNNIPIYMSSEFRLK------------------------ 156 (635)
T ss_pred ccchHHHHHHHhCCCeEEEEecccC-cHHHHHHHHHhcCCCccCceeeecceeehh------------------------
Confidence 3467899999999999999996432 457788888888876432222223322211
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCcEEEECC
Q 018946 244 RKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQ-SGVAGAQRIGMPCVVMRS 322 (348)
Q Consensus 244 ~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~-~Di~aA~~aG~~~i~v~~ 322 (348)
|-+-++ |.++++.-+++|.+.+++||.. .|+..+.+.|+.|...-+
T Consensus 157 -------------------KnSg~L--------------Fk~Vlk~EnVd~~~w~H~GDN~~aD~l~pk~LgI~Tlf~~s 203 (635)
T COG5610 157 -------------------KNSGNL--------------FKAVLKLENVDPKKWIHCGDNWVADYLKPKNLGISTLFYIS 203 (635)
T ss_pred -------------------cccchH--------------HHHHHhhcCCChhheEEecCchhhhhcCccccchhHHHHHH
Confidence 344444 9999999999999999999965 699999999998876544
Q ss_pred CCCCcc
Q 018946 323 RCITTL 328 (348)
Q Consensus 323 ~~~~~~ 328 (348)
...+.+
T Consensus 204 ~l~~~e 209 (635)
T COG5610 204 QLLPYE 209 (635)
T ss_pred HhhhHh
Confidence 333333
No 203
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=91.55 E-value=0.28 Score=50.62 Aligned_cols=44 Identities=16% Similarity=0.382 Sum_probs=37.5
Q ss_pred CCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccch
Q 018946 162 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISK 208 (348)
Q Consensus 162 l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~ 208 (348)
..||++|=+.+||+-|++.+.||+ ..+-.+..+....|+++|..
T Consensus 448 vK~Gi~ERf~elR~MgIkTvM~TG---DN~~TAa~IA~EAGVDdfiA 491 (681)
T COG2216 448 VKPGIKERFAELRKMGIKTVMITG---DNPLTAAAIAAEAGVDDFIA 491 (681)
T ss_pred cchhHHHHHHHHHhcCCeEEEEeC---CCHHHHHHHHHHhCchhhhh
Confidence 468999999999999999999998 35677788888999988654
No 204
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=89.98 E-value=0.47 Score=38.27 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=20.2
Q ss_pred EEEecCCcccccccc-ChHHHHHHHHHHcCCCC
Q 018946 87 VLLEVDGVLVDAYRF-GNRQAFNVAFQKLGLDC 118 (348)
Q Consensus 87 viFDvDGTL~d~~~~-~~~~a~~~~~~~~gl~~ 118 (348)
++||+||||+..... .....+-+.+++.|.+.
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~ 33 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEALDALRERGKPV 33 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHHHHHHHTTSEE
T ss_pred CEEeCccEeEeCCCcCcCHHHHHHHHHHcCCCE
Confidence 689999999985433 12234445555667653
No 205
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.71 E-value=0.59 Score=44.14 Aligned_cols=54 Identities=31% Similarity=0.492 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHH-cCCc
Q 018946 148 KNALDEFLASKDAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEK-LGSE 204 (348)
Q Consensus 148 ~~~~~~~~~~~~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~-lgl~ 204 (348)
++..+++++...+.++.|+.++.+.|+++++|+.|.|.| .-..++.++.. .++.
T Consensus 125 k~~I~~~Va~s~i~lReg~~~ff~~L~~~~IP~~iFSAG---igdiiEev~~q~~~~~ 179 (298)
T KOG3128|consen 125 KNAIDDIVAESNIALREGYEEFFEALQAHEIPLLIFSAG---IGDIIEEVTRQKLVLH 179 (298)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEEecc---hHHHHHHHHHHHhccC
Confidence 677888888777889999999999999999999999997 44556665554 4443
No 206
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=89.38 E-value=0.15 Score=50.63 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=21.0
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCC
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAY 186 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~ 186 (348)
.+.|.+..=|..+.+.||.++|.||.
T Consensus 104 ~l~~~vp~Klktl~~~g~~l~iftnq 129 (422)
T KOG2134|consen 104 ILFPEVPSKLKTLYQDGIKLFIFTNQ 129 (422)
T ss_pred eeccccchhhhhhccCCeEEEEEecc
Confidence 35666677788899999999999974
No 207
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=89.14 E-value=13 Score=37.18 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=34.3
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEECC
Q 018946 283 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRS 322 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~~ 322 (348)
|+++.+++|- .-.-++|||+...-.+|++..|++.-+..
T Consensus 414 FerI~~RFg~-K~~yvvIgdG~eee~aAK~ln~PfwrI~~ 452 (468)
T KOG3107|consen 414 FERIQSRFGR-KVVYVVIGDGVEEEQAAKALNMPFWRISS 452 (468)
T ss_pred HHHHHHHhCC-ceEEEEecCcHHHHHHHHhhCCceEeecc
Confidence 9999999997 45678899999999999999999988764
No 208
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=88.58 E-value=6.1 Score=37.54 Aligned_cols=33 Identities=6% Similarity=-0.001 Sum_probs=27.1
Q ss_pred HHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEECCCCC
Q 018946 288 EYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRCI 325 (348)
Q Consensus 288 ~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~~~~~ 325 (348)
+.++-. ||++|....++.|. .+.+++.|+.+..
T Consensus 230 ~~~~ph----IFFDDQ~~H~~~a~-~~vps~hVP~gv~ 262 (264)
T PF06189_consen 230 KAFRPH----IFFDDQDGHLESAS-KVVPSGHVPYGVA 262 (264)
T ss_pred HhhCCC----EeecCchhhhhHhh-cCCCEEeccCCcC
Confidence 455544 99999999999998 8999999988754
No 209
>PLN02423 phosphomannomutase
Probab=88.55 E-value=0.36 Score=45.17 Aligned_cols=32 Identities=3% Similarity=-0.163 Sum_probs=29.3
Q ss_pred CCCcEEEEec----CHhhHHHHHHcCCcEEEECCCC
Q 018946 293 PVRNCFLIAG----SQSGVAGAQRIGMPCVVMRSRC 324 (348)
Q Consensus 293 ~p~~~i~VGD----s~~Di~aA~~aG~~~i~v~~~~ 324 (348)
+++++++||| +.||+++.+.-|..++-|.++.
T Consensus 199 ~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~~~ 234 (245)
T PLN02423 199 DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTSPD 234 (245)
T ss_pred CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCCHH
Confidence 8999999999 7999999999999999998643
No 210
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=88.10 E-value=0.51 Score=40.84 Aligned_cols=117 Identities=17% Similarity=0.248 Sum_probs=67.0
Q ss_pred CCceEEEEecCCccccccccChHHHHHHHHHHcCCCCC---CCCHHHHHHHHhcccCcHHHHHHHHhhHHHHHHHHHhcC
Q 018946 82 PRDLAVLLEVDGVLVDAYRFGNRQAFNVAFQKLGLDCA---NWTAPIYTDLLRKSAGDEDRMLVLFFNRKNALDEFLASK 158 (348)
Q Consensus 82 ~~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~~gl~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (348)
|..+.+..|||-||.|...- |...++ +.+..++... .|+-. .+.....+....+.. +..+ .+
T Consensus 1 m~kk~iaIDmD~vLadll~e-wv~~~N-~y~D~~lk~~di~gwdik---~yv~~~~g~i~~il~-----ep~f---FR-- 65 (180)
T COG4502 1 MNKKTIAIDMDTVLADLLRE-WVKRYN-IYKDKLLKMSDIKGWDIK---NYVKPECGKIYDILK-----EPHF---FR-- 65 (180)
T ss_pred CCCceEEeeHHHHHHHHHHH-HHHHhh-hccccCcChHhhcccchh---hccCccCCeeeeecc-----Ccch---hh--
Confidence 45678999999999997654 556666 4444555410 12111 111111110000000 0011 11
Q ss_pred CCCCCCcHHHHHHHHHHCCCcEEEEeCCC---CCCchHHHHHHHHcCCcccchheeecc
Q 018946 159 DAPLRPGVEDFVDDAYNEGIPLIVLTAYG---KSGDRIARSVVEKLGSERISKIKIVGN 214 (348)
Q Consensus 159 ~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~---~~~~~~~~~il~~lgl~~~f~~~i~~~ 214 (348)
.+...|++++.+++|-.. +.|.|+|.+. ++...-.+-+.+.+++-.+..+++++.
T Consensus 66 nL~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCgn 123 (180)
T COG4502 66 NLGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCGN 123 (180)
T ss_pred hcCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEecC
Confidence 256789999999999887 9999999762 334455566667777766666655444
No 211
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=87.72 E-value=2 Score=46.95 Aligned_cols=42 Identities=26% Similarity=0.442 Sum_probs=35.9
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCc
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 204 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~ 204 (348)
-|.+|||++.++.|+.+|+.|-.+|+ +.-..++.+..+-|+.
T Consensus 646 DPvRPgV~~AV~~Cq~AGItVRMVTG---DNI~TAkAIA~eCGIL 687 (1034)
T KOG0204|consen 646 DPVRPGVPEAVQLCQRAGITVRMVTG---DNINTAKAIARECGIL 687 (1034)
T ss_pred CCCCCCcHHHHHHHHHcCcEEEEEeC---CcHHHHHHHHHHcccc
Confidence 36899999999999999999999998 3456778888887774
No 212
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=86.04 E-value=3.4 Score=35.14 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=47.5
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCC
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSG 234 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~ 234 (348)
...+++++..|.+|++.|+.++++|++. ...++..+|+.+.+...+-.. .....|+-+.-|+++.-|
T Consensus 43 ~~fY~Di~rIL~dLk~~GVtl~~ASRt~--ap~iA~q~L~~fkvk~~Gvlk------ps~e~ft~~~~g~gsklg 109 (144)
T KOG4549|consen 43 MIFYDDIRRILVDLKKLGVTLIHASRTM--APQIASQGLETFKVKQTGVLK------PSLEEFTFEAVGDGSKLG 109 (144)
T ss_pred eeeccchhHHHHHHHhcCcEEEEecCCC--CHHHHHHHHHHhccCcccccc------hhhhcCceeeecCcccch
Confidence 3468899999999999999999999985 478889999988775433221 111224455556666544
No 213
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=85.60 E-value=1.1 Score=48.76 Aligned_cols=154 Identities=16% Similarity=0.216 Sum_probs=85.6
Q ss_pred CCCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhh--hh----hhccccccccccc
Q 018946 159 DAPLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEV--ER----SLYGQFVLGKGIS 232 (348)
Q Consensus 159 ~~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~--~~----~~~~~~v~g~~v~ 232 (348)
.+|+.|++++.|+.|.+.+++++.+|+ ...-.+.++.+.+|+-+-.-.++.-.++. .+ +.-+.++.. ..
T Consensus 673 ~CPlK~Ds~~~I~el~~SSH~vvMITG---DnpLTAchVak~v~iv~k~~~vl~~~~~~~~~~~~w~s~d~t~~lp--~~ 747 (1160)
T KOG0209|consen 673 SCPLKPDSKKTIKELNNSSHRVVMITG---DNPLTACHVAKEVGIVEKPTLVLDLPEEGDGNQLEWVSVDGTIVLP--LK 747 (1160)
T ss_pred eCCCCccHHHHHHHHhccCceEEEEeC---CCccchheehheeeeeccCceeeccCccCCCceeeEecCCCceeec--CC
Confidence 378999999999999999999999998 34566677777777643211111100000 00 000000000 00
Q ss_pred CCchhH-HHHHHHHHHHHH--HHHHHHHHHhhcCCCCccCCC-CCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHH
Q 018946 233 SGVDEQ-LATEARKAVSAQ--KQEIAEEVASMLKLSVDIDTS-SPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVA 308 (348)
Q Consensus 233 ~~~~~~-~~~~~~k~~~~~--~~~i~~~~~~~~KP~p~i~~~-~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~ 308 (348)
.+.... ++.+.+=-.+++ -+=++.+...+.-|+..+|.. .|+-++.+|..| +.+| .-++|.||+.||+-
T Consensus 748 p~~~~~~l~~~~dlcitG~~l~~l~~~~~l~~l~~hv~VfARvaP~QKE~ii~tl----K~~G---y~TLMCGDGTNDVG 820 (1160)
T KOG0209|consen 748 PGKKKTLLAETHDLCITGSALDHLQATDQLRRLIPHVWVFARVAPKQKEFIITTL----KKLG---YVTLMCGDGTNDVG 820 (1160)
T ss_pred CCccchhhhhhhhhhcchhHHHHHhhhHHHHHhhhheeEEEeeChhhHHHHHHHH----HhcC---eEEEEecCCCcchh
Confidence 000000 000000000000 001122333445677777655 477777776444 4555 46899999999999
Q ss_pred HHHHcCCcEEEECCCC
Q 018946 309 GAQRIGMPCVVMRSRC 324 (348)
Q Consensus 309 aA~~aG~~~i~v~~~~ 324 (348)
|.+.|...+.+++...
T Consensus 821 ALK~AhVGVALL~~~~ 836 (1160)
T KOG0209|consen 821 ALKQAHVGVALLNNPE 836 (1160)
T ss_pred hhhhcccceehhcCCh
Confidence 9999999999888765
No 214
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=85.41 E-value=2.4 Score=40.56 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=25.9
Q ss_pred CCCceEEEEecCCcccccccc-ChHHHHHHHHHHcCCCC
Q 018946 81 PPRDLAVLLEVDGVLVDAYRF-GNRQAFNVAFQKLGLDC 118 (348)
Q Consensus 81 ~~~~kaviFDvDGTL~d~~~~-~~~~a~~~~~~~~gl~~ 118 (348)
...+++++||+||||+..... ..-..+-+.+++.|++.
T Consensus 5 ~~~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~ 43 (269)
T COG0647 5 MDKYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPV 43 (269)
T ss_pred hhhcCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCeE
Confidence 346789999999999986543 12234455566777765
No 215
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=85.07 E-value=8.1 Score=37.46 Aligned_cols=46 Identities=17% Similarity=0.161 Sum_probs=34.8
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcc
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 205 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~ 205 (348)
-.+.||+.++++.|++.|..+.++||-++...+..-..++++|+..
T Consensus 37 ~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~ 82 (306)
T KOG2882|consen 37 EKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS 82 (306)
T ss_pred CCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc
Confidence 3578999999999999999999999855433444444555677765
No 216
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=84.88 E-value=0.47 Score=41.02 Aligned_cols=15 Identities=47% Similarity=0.698 Sum_probs=13.2
Q ss_pred ceEEEEecCCccccc
Q 018946 84 DLAVLLEVDGVLVDA 98 (348)
Q Consensus 84 ~kaviFDvDGTL~d~ 98 (348)
+++|+||+||||++.
T Consensus 1 ~~~~~~D~Dgtl~~~ 15 (154)
T TIGR01670 1 IRLLILDVDGVLTDG 15 (154)
T ss_pred CeEEEEeCceeEEcC
Confidence 478999999999983
No 217
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=84.48 E-value=1.8 Score=46.87 Aligned_cols=44 Identities=16% Similarity=0.074 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcC--CcEEEECC
Q 018946 276 LDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIG--MPCVVMRS 322 (348)
Q Consensus 276 ~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG--~~~i~v~~ 322 (348)
..|+.+ .+.+++ +++++.++++||+.||+.+.+.++ ..+|.|..
T Consensus 656 vnKG~a-l~~ll~--~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~ 701 (726)
T PRK14501 656 VNKGRA-VRRLLE--AGPYDFVLAIGDDTTDEDMFRALPETAITVKVGP 701 (726)
T ss_pred CCHHHH-HHHHHh--cCCCCEEEEECCCCChHHHHHhcccCceEEEECC
Confidence 344433 555566 778899999999999999999874 34555554
No 218
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=83.70 E-value=0.58 Score=41.67 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=14.5
Q ss_pred CceEEEEecCCccccc
Q 018946 83 RDLAVLLEVDGVLVDA 98 (348)
Q Consensus 83 ~~kaviFDvDGTL~d~ 98 (348)
.+|+|+||+||||++.
T Consensus 20 ~ikli~~D~Dgtl~~~ 35 (183)
T PRK09484 20 NIRLLICDVDGVFSDG 35 (183)
T ss_pred CceEEEEcCCeeeecC
Confidence 4889999999999986
No 219
>PLN02423 phosphomannomutase
Probab=82.98 E-value=1.3 Score=41.48 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=13.2
Q ss_pred ceEEE-EecCCccccccc
Q 018946 84 DLAVL-LEVDGVLVDAYR 100 (348)
Q Consensus 84 ~kavi-FDvDGTL~d~~~ 100 (348)
+++++ ||+||||++...
T Consensus 6 ~~~i~~~D~DGTLl~~~~ 23 (245)
T PLN02423 6 PGVIALFDVDGTLTAPRK 23 (245)
T ss_pred cceEEEEeccCCCcCCCC
Confidence 45555 999999998764
No 220
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=82.84 E-value=2 Score=40.50 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=33.6
Q ss_pred CcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCccc
Q 018946 164 PGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI 206 (348)
Q Consensus 164 pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~ 206 (348)
|++.++|+.|+++|++++++|+. +...+..+++.+|+..+
T Consensus 24 ~~~~~ai~~l~~~Gi~~~iaTgR---~~~~~~~~~~~l~l~~~ 63 (273)
T PRK00192 24 EPAKPALKALKEKGIPVIPCTSK---TAAEVEVLRKELGLEDP 63 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCC---CHHHHHHHHHHcCCCCC
Confidence 45667899999999999999995 56778889999998754
No 221
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=82.17 E-value=0.7 Score=40.66 Aligned_cols=18 Identities=39% Similarity=0.584 Sum_probs=15.5
Q ss_pred CCCceEEEEecCCccccc
Q 018946 81 PPRDLAVLLEVDGVLVDA 98 (348)
Q Consensus 81 ~~~~kaviFDvDGTL~d~ 98 (348)
....|.+|||+||||+|.
T Consensus 5 a~~IkLli~DVDGvLTDG 22 (170)
T COG1778 5 AKNIKLLILDVDGVLTDG 22 (170)
T ss_pred hhhceEEEEeccceeecC
Confidence 356789999999999995
No 222
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=79.97 E-value=4.5 Score=35.73 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=24.2
Q ss_pred HHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEECCCC
Q 018946 286 GAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRC 324 (348)
Q Consensus 286 a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~~~~ 324 (348)
-+..-|++ ++||++.. ...|++.|++++.+.++.
T Consensus 120 ~~~~~G~~----viVGg~~~-~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 120 QAKAEGVD----VIVGGGVV-CRLARKLGLPGVLIESGE 153 (176)
T ss_dssp HHHHTT------EEEESHHH-HHHHHHTTSEEEESS--H
T ss_pred HHHHcCCc----EEECCHHH-HHHHHHcCCcEEEEEecH
Confidence 34456766 89999865 788999999999998754
No 223
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=78.95 E-value=3.9 Score=41.09 Aligned_cols=121 Identities=11% Similarity=-0.005 Sum_probs=70.8
Q ss_pred HHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHH---cCCcccchheeecchhhhhhhcccccccccc-cCCchhHHHHH
Q 018946 167 EDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEK---LGSERISKIKIVGNEEVERSLYGQFVLGKGI-SSGVDEQLATE 242 (348)
Q Consensus 167 ~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~---lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v-~~~~~~~~~~~ 242 (348)
..+|..+++.|.++-++||.. -.+....... .++..+|+.+++....=. .+..+.+..+-. ..|
T Consensus 204 v~~l~~~r~sGKk~fl~Tns~---~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~-ff~e~~vlreV~t~~g-------- 271 (424)
T KOG2469|consen 204 VPLLSMLRDSGKKTFLHTNSD---WDYTDIFMAFHYGFDWETYFDLVETRAAKPG-FFHEGTVLREVEPQEG-------- 271 (424)
T ss_pred ccchHHHHhhccceEEeeccc---cchhhHHHHHHhCCCcceeEEEEEEeccCCc-cccccceeeeeccccc--------
Confidence 339999999999999999853 3333333332 467899998877642111 111112111111 111
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccCCCCCch----hhHHHHHHHHHHHHcCCCCCcEEEEecCHh-h-HHHHHHcCCc
Q 018946 243 ARKAVSAQKQEIAEEVASMLKLSVDIDTSSPES----LDKIVAALRAGAEYAEKPVRNCFLIAGSQS-G-VAGAQRIGMP 316 (348)
Q Consensus 243 ~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~----~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~-D-i~aA~~aG~~ 316 (348)
||.+..|+.+-+- ..+. .+.+++.+++.-.+++++||+.. | +..-+.-|+.
T Consensus 272 --------------------~l~~g~~~~p~e~~~~ySggs---~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wr 328 (424)
T KOG2469|consen 272 --------------------LLKNGDNTGPLEQGGVYSGGS---LKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWR 328 (424)
T ss_pred --------------------cccccccCCcchhcccCCcch---HHHHHHHhcccccceeecccceeeeEEecceecceE
Confidence 3333222221000 0000 67778889988899999999986 5 4556777998
Q ss_pred EEEECC
Q 018946 317 CVVMRS 322 (348)
Q Consensus 317 ~i~v~~ 322 (348)
+++|-.
T Consensus 329 t~lv~p 334 (424)
T KOG2469|consen 329 TVLVAP 334 (424)
T ss_pred EEEEeh
Confidence 887764
No 224
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=78.41 E-value=4 Score=46.35 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=23.9
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeC
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTA 185 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn 185 (348)
++..||.+.|+.|+++|+|+.++|+
T Consensus 651 kLQdgVPetI~~L~~AGIKIWVLTG 675 (1151)
T KOG0206|consen 651 KLQDGVPETIAKLAQAGIKIWVLTG 675 (1151)
T ss_pred hhccCchHHHHHHHHcCCEEEEEcC
Confidence 5789999999999999999999999
No 225
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=78.12 E-value=13 Score=36.08 Aligned_cols=44 Identities=25% Similarity=0.276 Sum_probs=33.2
Q ss_pred CCCCcHHHHHHHHHHC----CCcEEEEeCCCCCC-chHHHHHHHHcCCc
Q 018946 161 PLRPGVEDFVDDAYNE----GIPLIVLTAYGKSG-DRIARSVVEKLGSE 204 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~----Gi~vaIvTn~~~~~-~~~~~~il~~lgl~ 204 (348)
.+.||+.++++.|+.+ |+++.++||..... ...+..+.+++|+.
T Consensus 16 ~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~ 64 (321)
T TIGR01456 16 KPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVD 64 (321)
T ss_pred cccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCC
Confidence 4589999999999998 99999999864222 33445555788874
No 226
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=78.10 E-value=3.3 Score=37.41 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=33.9
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCc
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 204 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~ 204 (348)
.+...++|+.|+++|++++++||. +...+..+++.+++.
T Consensus 18 ~~~~~~~l~~l~~~gi~~~i~TgR---~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 18 WQPAAPWLTRLQEAGIPVILCTSK---TAAEVEYLQKALGLT 56 (221)
T ss_pred cHHHHHHHHHHHHCCCeEEEEcCC---CHHHHHHHHHHcCCC
Confidence 334889999999999999999995 678889999999986
No 227
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=77.86 E-value=19 Score=34.01 Aligned_cols=101 Identities=21% Similarity=0.234 Sum_probs=65.4
Q ss_pred CCCCCCcHHHHHHHHHHC---CCcEE-EEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCC
Q 018946 159 DAPLRPGVEDFVDDAYNE---GIPLI-VLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSG 234 (348)
Q Consensus 159 ~~~l~pGv~elL~~Lk~~---Gi~va-IvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~ 234 (348)
.-.+.|+..+.++.++.. |+.+. +|++ +...-..+..+|-+-... .-..|-.|.++.
T Consensus 102 ~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~d-----d~~~ar~l~~~G~~~vmP------------lg~pIGsg~Gi~-- 162 (248)
T cd04728 102 DKTLLPDPIETLKAAEILVKEGFTVLPYCTD-----DPVLAKRLEDAGCAAVMP------------LGSPIGSGQGLL-- 162 (248)
T ss_pred ccccccCHHHHHHHHHHHHHCCCEEEEEeCC-----CHHHHHHHHHcCCCEeCC------------CCcCCCCCCCCC--
Confidence 345799999999999888 99999 6666 455556666666543211 001112222211
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecC---HhhHHHHH
Q 018946 235 VDEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGS---QSGVAGAQ 311 (348)
Q Consensus 235 ~~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs---~~Di~aA~ 311 (348)
+|+. ++.+.+..++ .|++|.+ +.|+..|.
T Consensus 163 ------------------------------~~~~--------------I~~I~e~~~v----pVI~egGI~tpeda~~Am 194 (248)
T cd04728 163 ------------------------------NPYN--------------LRIIIERADV----PVIVDAGIGTPSDAAQAM 194 (248)
T ss_pred ------------------------------CHHH--------------HHHHHHhCCC----cEEEeCCCCCHHHHHHHH
Confidence 1222 4555555443 3777764 67999999
Q ss_pred HcCCcEEEECCCCCC
Q 018946 312 RIGMPCVVMRSRCIT 326 (348)
Q Consensus 312 ~aG~~~i~v~~~~~~ 326 (348)
+.|...|++.+....
T Consensus 195 elGAdgVlV~SAIt~ 209 (248)
T cd04728 195 ELGADAVLLNTAIAK 209 (248)
T ss_pred HcCCCEEEEChHhcC
Confidence 999999999998765
No 228
>PTZ00174 phosphomannomutase; Provisional
Probab=77.54 E-value=2.6 Score=39.14 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=17.2
Q ss_pred CCCceEEEEecCCccccccc
Q 018946 81 PPRDLAVLLEVDGVLVDAYR 100 (348)
Q Consensus 81 ~~~~kaviFDvDGTL~d~~~ 100 (348)
.|.+|.|+||+||||++...
T Consensus 2 ~~~~klia~DlDGTLL~~~~ 21 (247)
T PTZ00174 2 EMKKTILLFDVDGTLTKPRN 21 (247)
T ss_pred CCCCeEEEEECcCCCcCCCC
Confidence 46789999999999998764
No 229
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=76.36 E-value=3.8 Score=43.60 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=45.4
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCc-ccchheeecchh
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE-RISKIKIVGNEE 216 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~-~~f~~~i~~~~e 216 (348)
+.++|++.+||+++.+. +.+.|+|-|+ ..++..+++.+..+ .||...|++-++
T Consensus 200 vKlRP~~~efL~~~skl-femhVyTmg~---R~YA~~i~~liDP~~~lF~dRIisrde 253 (635)
T KOG0323|consen 200 VKLRPFVHEFLKEANKL-FEMHVYTMGT---RDYALEIAKLIDPEGKYFGDRIISRDE 253 (635)
T ss_pred EEeCccHHHHHHHHHhh-ceeEEEeccc---hHHHHHHHHHhCCCCccccceEEEecC
Confidence 56899999999999976 9999999985 48889999998886 788887777655
No 230
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=75.93 E-value=4.5 Score=36.42 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=32.5
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcc
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 205 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~ 205 (348)
.|...+.|++|+++|++++++|+. +...+..+.+.+++..
T Consensus 20 ~~~~~~~i~~l~~~g~~~~~~TGR---~~~~~~~~~~~l~~~~ 59 (215)
T TIGR01487 20 SERAIEAIRKAEKKGIPVSLVTGN---TVPFARALAVLIGTSG 59 (215)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCC---cchhHHHHHHHhCCCC
Confidence 456667899999999999999996 4566777888888764
No 231
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=75.81 E-value=2.8 Score=38.65 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=11.7
Q ss_pred EEEEecCCcccccc
Q 018946 86 AVLLEVDGVLVDAY 99 (348)
Q Consensus 86 aviFDvDGTL~d~~ 99 (348)
.|+||+||||++..
T Consensus 1 li~~DlDGTLl~~~ 14 (225)
T TIGR02461 1 VIFTDLDGTLLPPG 14 (225)
T ss_pred CEEEeCCCCCcCCC
Confidence 47999999999843
No 232
>PLN02645 phosphoglycolate phosphatase
Probab=75.73 E-value=2.7 Score=40.61 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=22.9
Q ss_pred CceEEEEecCCcccccccc-ChHHHHHHHHHHcCCCC
Q 018946 83 RDLAVLLEVDGVLVDAYRF-GNRQAFNVAFQKLGLDC 118 (348)
Q Consensus 83 ~~kaviFDvDGTL~d~~~~-~~~~a~~~~~~~~gl~~ 118 (348)
.+++++||+||||++.... .....+-+.+++.|.+.
T Consensus 27 ~~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~ 63 (311)
T PLN02645 27 SVETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKL 63 (311)
T ss_pred hCCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEE
Confidence 5789999999999985542 11223333455566654
No 233
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=75.55 E-value=14 Score=35.09 Aligned_cols=45 Identities=16% Similarity=0.079 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEECCCCCC
Q 018946 282 ALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRCIT 326 (348)
Q Consensus 282 ~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~~~~~~ 326 (348)
+|+.+.+++|-+.-.-++|||+..-=.||+..+|+++-+......
T Consensus 218 cFe~I~~Rfg~p~~~f~~IGDG~eEe~aAk~l~wPFw~I~~h~Dl 262 (274)
T TIGR01658 218 CFKWIKERFGHPKVRFCAIGDGWEECTAAQAMNWPFVKIDLHPDS 262 (274)
T ss_pred HHHHHHHHhCCCCceEEEeCCChhHHHHHHhcCCCeEEeecCCCH
Confidence 399999999998889999999999999999999999999864433
No 234
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=74.49 E-value=5.5 Score=38.35 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=45.9
Q ss_pred CCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhh
Q 018946 162 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEV 217 (348)
Q Consensus 162 l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~ 217 (348)
..|.+.+.|.+|++.|..+++=|-|+ ...++.-++++++..+|+.++.++...
T Consensus 143 r~~~v~~sL~~Lk~~g~vLvLWSyG~---~eHV~~sl~~~~L~~~Fd~ii~~G~~~ 195 (297)
T PF05152_consen 143 RDPAVYDSLRELKEQGCVLVLWSYGN---REHVRHSLKELKLEGYFDIIICGGNKA 195 (297)
T ss_pred CChHHHHHHHHHHHcCCEEEEecCCC---HHHHHHHHHHhCCccccEEEEeCCccC
Confidence 36889999999999999999999874 588899999999999999998776443
No 235
>PRK00208 thiG thiazole synthase; Reviewed
Probab=74.35 E-value=27 Score=33.08 Aligned_cols=100 Identities=21% Similarity=0.240 Sum_probs=65.2
Q ss_pred CCCCCcHHHHHHHHHHC---CCcEE-EEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCc
Q 018946 160 APLRPGVEDFVDDAYNE---GIPLI-VLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGV 235 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~---Gi~va-IvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~ 235 (348)
-.+.|+..+.++.++.. |+.+. +|++ +...-..+..+|-+-... .-..|-.|.++.
T Consensus 103 ~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~-----d~~~ak~l~~~G~~~vmP------------lg~pIGsg~gi~--- 162 (250)
T PRK00208 103 KTLLPDPIETLKAAEILVKEGFVVLPYCTD-----DPVLAKRLEEAGCAAVMP------------LGAPIGSGLGLL--- 162 (250)
T ss_pred CCCCcCHHHHHHHHHHHHHCCCEEEEEeCC-----CHHHHHHHHHcCCCEeCC------------CCcCCCCCCCCC---
Confidence 45789999999999888 99999 7776 455556666666653211 001112222211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecC---HhhHHHHHH
Q 018946 236 DEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGS---QSGVAGAQR 312 (348)
Q Consensus 236 ~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs---~~Di~aA~~ 312 (348)
+|+. ++.+.+..+++ +++|.+ +.|+..|.+
T Consensus 163 -----------------------------~~~~--------------i~~i~e~~~vp----VIveaGI~tpeda~~Ame 195 (250)
T PRK00208 163 -----------------------------NPYN--------------LRIIIEQADVP----VIVDAGIGTPSDAAQAME 195 (250)
T ss_pred -----------------------------CHHH--------------HHHHHHhcCCe----EEEeCCCCCHHHHHHHHH
Confidence 1222 45555554443 777764 579999999
Q ss_pred cCCcEEEECCCCCC
Q 018946 313 IGMPCVVMRSRCIT 326 (348)
Q Consensus 313 aG~~~i~v~~~~~~ 326 (348)
.|...|+|.+....
T Consensus 196 lGAdgVlV~SAItk 209 (250)
T PRK00208 196 LGADAVLLNTAIAV 209 (250)
T ss_pred cCCCEEEEChHhhC
Confidence 99999999998765
No 236
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=73.08 E-value=6.2 Score=35.61 Aligned_cols=42 Identities=24% Similarity=0.275 Sum_probs=34.4
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcc
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 205 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~ 205 (348)
.+.|...+.|.+|+++|++++++|+. +...+..+++.+|+..
T Consensus 20 ~i~~~~~~al~~l~~~G~~~~iaTGR---~~~~~~~~~~~l~~~~ 61 (230)
T PRK01158 20 RLSLKAVEAIRKAEKLGIPVILATGN---VLCFARAAAKLIGTSG 61 (230)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEEcCC---chHHHHHHHHHhCCCC
Confidence 35678889999999999999999996 4566677788888864
No 237
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=72.76 E-value=23 Score=34.38 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=23.7
Q ss_pred CCCcHHHHHHHHHHCCCcEEEEeCCC
Q 018946 162 LRPGVEDFVDDAYNEGIPLIVLTAYG 187 (348)
Q Consensus 162 l~pGv~elL~~Lk~~Gi~vaIvTn~~ 187 (348)
++|.+.++++.++++|..+.++||+.
T Consensus 85 L~pdl~eiv~~~~~~g~~v~l~TNG~ 110 (318)
T TIGR03470 85 LHPEIDEIVRGLVARKKFVYLCTNAL 110 (318)
T ss_pred ccccHHHHHHHHHHcCCeEEEecCce
Confidence 57889999999999999999999984
No 238
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=72.61 E-value=2.1 Score=39.97 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=14.3
Q ss_pred ceEEEEecCCccccccc
Q 018946 84 DLAVLLEVDGVLVDAYR 100 (348)
Q Consensus 84 ~kaviFDvDGTL~d~~~ 100 (348)
+++++||+||||++...
T Consensus 1 ~~~~~~D~DGtl~~~~~ 17 (249)
T TIGR01457 1 YKGYLIDLDGTMYKGKE 17 (249)
T ss_pred CCEEEEeCCCceEcCCe
Confidence 36899999999998654
No 239
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=72.36 E-value=2 Score=36.81 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=13.6
Q ss_pred eEEEEecCCcccccccc
Q 018946 85 LAVLLEVDGVLVDAYRF 101 (348)
Q Consensus 85 kaviFDvDGTL~d~~~~ 101 (348)
|.++||+||||+.+...
T Consensus 1 k~LVlDLD~TLv~~~~~ 17 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSK 17 (159)
T ss_dssp EEEEEE-CTTTEEEESS
T ss_pred CEEEEeCCCcEEEEeec
Confidence 57999999999997754
No 240
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=72.20 E-value=6.8 Score=36.23 Aligned_cols=39 Identities=15% Similarity=0.386 Sum_probs=31.1
Q ss_pred CcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcc
Q 018946 164 PGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 205 (348)
Q Consensus 164 pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~ 205 (348)
+...+.|++|+++|++++++|+. ....+..+++.+++..
T Consensus 19 ~~~~~~i~~l~~~G~~~~iaTGR---~~~~~~~~~~~~~~~~ 57 (256)
T TIGR00099 19 PSTKEALAKLREKGIKVVLATGR---PYKEVKNILKELGLDT 57 (256)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCC---CHHHHHHHHHHcCCCC
Confidence 35567889999999999999996 4566777888888763
No 241
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=71.01 E-value=29 Score=34.12 Aligned_cols=100 Identities=23% Similarity=0.257 Sum_probs=64.8
Q ss_pred CCCCCcHHHHHHHHHHC---CCcE-EEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCc
Q 018946 160 APLRPGVEDFVDDAYNE---GIPL-IVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGV 235 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~---Gi~v-aIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~ 235 (348)
-.+.|+..+.+++++.. |+.+ .+|++ +...-..+..+|-.-.. ..-..|-+|.++.
T Consensus 177 ~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~-----d~~~a~~l~~~g~~avm------------Pl~~pIGsg~gv~--- 236 (326)
T PRK11840 177 KTLYPDMVETLKATEILVKEGFQVMVYCSD-----DPIAAKRLEDAGAVAVM------------PLGAPIGSGLGIQ--- 236 (326)
T ss_pred CCcccCHHHHHHHHHHHHHCCCEEEEEeCC-----CHHHHHHHHhcCCEEEe------------eccccccCCCCCC---
Confidence 45789999999999888 9999 55555 45566666666652111 0111222333321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecC---HhhHHHHHH
Q 018946 236 DEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGS---QSGVAGAQR 312 (348)
Q Consensus 236 ~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs---~~Di~aA~~ 312 (348)
+|++ ++...+...++ ++||-+ +.|+..|.+
T Consensus 237 -----------------------------~p~~--------------i~~~~e~~~vp----VivdAGIg~~sda~~Ame 269 (326)
T PRK11840 237 -----------------------------NPYT--------------IRLIVEGATVP----VLVDAGVGTASDAAVAME 269 (326)
T ss_pred -----------------------------CHHH--------------HHHHHHcCCCc----EEEeCCCCCHHHHHHHHH
Confidence 2333 55666664443 778875 579999999
Q ss_pred cCCcEEEECCCCCC
Q 018946 313 IGMPCVVMRSRCIT 326 (348)
Q Consensus 313 aG~~~i~v~~~~~~ 326 (348)
.|...|+++++...
T Consensus 270 lGadgVL~nSaIa~ 283 (326)
T PRK11840 270 LGCDGVLMNTAIAE 283 (326)
T ss_pred cCCCEEEEcceecc
Confidence 99999999997653
No 242
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=70.77 E-value=2.5 Score=39.22 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=13.0
Q ss_pred ceEEEEecCCccccc
Q 018946 84 DLAVLLEVDGVLVDA 98 (348)
Q Consensus 84 ~kaviFDvDGTL~d~ 98 (348)
.++++||+||||++.
T Consensus 3 ~~~l~lD~DGTL~~~ 17 (244)
T TIGR00685 3 KRAFFFDYDGTLSEI 17 (244)
T ss_pred cEEEEEecCccccCC
Confidence 468999999999974
No 243
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=70.69 E-value=33 Score=35.94 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=26.1
Q ss_pred HHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEECCC
Q 018946 286 GAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSR 323 (348)
Q Consensus 286 a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~~~ 323 (348)
-++..|++ ++|||... ...|+++||..|++.++
T Consensus 140 ~l~~~G~~----~viG~~~~-~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 140 DLRARGIG----AVVGAGLI-TDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHCCCC----EEECChHH-HHHHHHcCCceEEEecH
Confidence 34556776 88999855 67899999999999874
No 244
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=69.71 E-value=7.4 Score=36.37 Aligned_cols=39 Identities=10% Similarity=0.006 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCccc
Q 018946 165 GVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI 206 (348)
Q Consensus 165 Gv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~ 206 (348)
...+.|++|+++|++++++|+. +...+..+++.+++..+
T Consensus 23 ~~~~ai~~l~~~G~~~~iaTGR---~~~~~~~~~~~l~~~~~ 61 (272)
T PRK15126 23 KTLSTLARLRERDITLTFATGR---HVLEMQHILGALSLDAY 61 (272)
T ss_pred HHHHHHHHHHHCCCEEEEECCC---CHHHHHHHHHHcCCCCc
Confidence 3446788999999999999995 45667788888988643
No 245
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=68.60 E-value=6.4 Score=35.04 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=26.2
Q ss_pred CCceEEEEecCCcccccccc---ChHHHHHHHHHHcCCC
Q 018946 82 PRDLAVLLEVDGVLVDAYRF---GNRQAFNVAFQKLGLD 117 (348)
Q Consensus 82 ~~~kaviFDvDGTL~d~~~~---~~~~a~~~~~~~~gl~ 117 (348)
..+++|++|+|.||+..... ....+|..-+++.|+.
T Consensus 26 ~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~ 64 (175)
T COG2179 26 HGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIK 64 (175)
T ss_pred cCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCE
Confidence 46789999999999974332 2346777777777775
No 246
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=67.98 E-value=11 Score=34.97 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=31.3
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcc
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 205 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~ 205 (348)
.|...+.|++++++|++++++|+. +...+..+++.+++..
T Consensus 22 ~~~~~~ai~~~~~~G~~~~iaTGR---~~~~~~~~~~~l~~~~ 61 (272)
T PRK10530 22 LPESLEALARAREAGYKVIIVTGR---HHVAIHPFYQALALDT 61 (272)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCC---ChHHHHHHHHhcCCCC
Confidence 445567889999999999999995 4556677888888763
No 247
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=67.85 E-value=50 Score=31.19 Aligned_cols=37 Identities=14% Similarity=0.265 Sum_probs=28.9
Q ss_pred HHHHHHHcCCCCCcEEEEecCHh--hHHHHHHcCCcEEEECC
Q 018946 283 LRAGAEYAEKPVRNCFLIAGSQS--GVAGAQRIGMPCVVMRS 322 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGDs~~--Di~aA~~aG~~~i~v~~ 322 (348)
-+..++..|+ -||.|||.+. +..+....|+..|.+.-
T Consensus 79 ARE~l~~~~i---P~IvI~D~p~~K~~d~l~~~g~GYIivk~ 117 (277)
T PRK00994 79 AREILKAAGI---PCIVIGDAPGKKVKDAMEEQGLGYIIVKA 117 (277)
T ss_pred HHHHHHhcCC---CEEEEcCCCccchHHHHHhcCCcEEEEec
Confidence 4555666676 5899999864 67889999999998874
No 248
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=67.77 E-value=30 Score=35.94 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=63.2
Q ss_pred CCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHHH
Q 018946 162 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLAT 241 (348)
Q Consensus 162 l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~~ 241 (348)
++-..++++..|+++|+-++|+|- |.+..+..++++..-- ++.-++... |. ..
T Consensus 256 ~fk~fQ~~Ik~l~kqGVlLav~SK---N~~~da~evF~khp~M------iLkeedfa~--~~---------iN------- 308 (574)
T COG3882 256 AFKTFQNFIKGLKKQGVLLAVCSK---NTEKDAKEVFRKHPDM------ILKEEDFAV--FQ---------IN------- 308 (574)
T ss_pred hHHHHHHHHHHHHhccEEEEEecC---CchhhHHHHHhhCCCe------EeeHhhhhh--he---------ec-------
Confidence 344567899999999999999996 4577788888776431 111111100 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCC
Q 018946 242 EARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGM 315 (348)
Q Consensus 242 ~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~ 315 (348)
+-|..+= .++.|++|++-.+..+|++|++..-+--++-+-
T Consensus 309 --------------------W~~K~eN--------------irkIAkklNlg~dSmvFiDD~p~ErE~vk~~~~ 348 (574)
T COG3882 309 --------------------WDPKAEN--------------IRKIAKKLNLGLDSMVFIDDNPAERELVKRELP 348 (574)
T ss_pred --------------------CCcchhh--------------HHHHHHHhCCCccceEEecCCHHHHHHHHhcCc
Confidence 1122222 789999999999999999999998888887775
No 249
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=66.62 E-value=11 Score=35.05 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=31.0
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcc
Q 018946 165 GVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 205 (348)
Q Consensus 165 Gv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~ 205 (348)
...++|+.|+++|++++++|+. ....+..+++.+|+..
T Consensus 20 ~~~~~i~~l~~~g~~~~~~TgR---~~~~~~~~~~~~~~~~ 57 (256)
T TIGR01486 20 PAKEVLERLQELGIPVIPCTSK---TAAEVEYLRKELGLED 57 (256)
T ss_pred HHHHHHHHHHHCCCeEEEEcCC---CHHHHHHHHHHcCCCC
Confidence 3567889999999999999985 4567788889998753
No 250
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=66.33 E-value=10 Score=34.02 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=29.9
Q ss_pred CcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcc
Q 018946 164 PGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 205 (348)
Q Consensus 164 pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~ 205 (348)
|...+.|.+++++|++++++|+. ....+..+++.+|+..
T Consensus 18 ~~~~~al~~l~~~Gi~~~~aTGR---~~~~~~~~~~~l~~~~ 56 (225)
T TIGR01482 18 ESALEAIRKAESVGIPVVLVTGN---SVQFARALAKLIGTPD 56 (225)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCC---chHHHHHHHHHhCCCC
Confidence 44556788999999999999995 4556677788888543
No 251
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=65.95 E-value=1e+02 Score=28.32 Aligned_cols=39 Identities=10% Similarity=0.019 Sum_probs=29.0
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcC
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLG 202 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lg 202 (348)
.+...++|+.+|+.|++.+++-|..+ +...+..++...+
T Consensus 92 ~~~~~~~l~~ik~~g~k~GlalnP~T-p~~~i~~~l~~~D 130 (220)
T PRK08883 92 SEHVDRTLQLIKEHGCQAGVVLNPAT-PLHHLEYIMDKVD 130 (220)
T ss_pred cccHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHhCC
Confidence 45688999999999999999998653 4555555555443
No 252
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=65.77 E-value=53 Score=31.23 Aligned_cols=45 Identities=11% Similarity=0.003 Sum_probs=29.3
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchh
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKI 209 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~ 209 (348)
+.-.+.+.++.+.+++.|-+|.+.++. ..+..+.......+++-.
T Consensus 111 ~~~V~d~~ea~~~~~~~~~rVflt~G~-----~~l~~f~~~~~~~~~~~R 155 (257)
T COG2099 111 WIEVADIEEAAEAAKQLGRRVFLTTGR-----QNLAHFVAADAHSHVLAR 155 (257)
T ss_pred eEEecCHHHHHHHHhccCCcEEEecCc-----cchHHHhcCcccceEEEE
Confidence 334678999999999988566555553 555666655555555443
No 253
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=65.74 E-value=36 Score=32.03 Aligned_cols=100 Identities=22% Similarity=0.302 Sum_probs=61.5
Q ss_pred CCCCCCcHHHHHHH---HHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCc
Q 018946 159 DAPLRPGVEDFVDD---AYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGV 235 (348)
Q Consensus 159 ~~~l~pGv~elL~~---Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~ 235 (348)
...+.|+..++++. |-++|+.|.-.++ .+..+-..++..|-.-... .-..|-+|.|+.
T Consensus 102 ~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~----~D~v~akrL~d~GcaavMP------------lgsPIGSg~Gi~--- 162 (247)
T PF05690_consen 102 DKTLLPDPIETLKAAEILVKEGFVVLPYCT----DDPVLAKRLEDAGCAAVMP------------LGSPIGSGRGIQ--- 162 (247)
T ss_dssp TTT--B-HHHHHHHHHHHHHTT-EEEEEE-----S-HHHHHHHHHTT-SEBEE------------BSSSTTT---SS---
T ss_pred CCCcCCChhHHHHHHHHHHHCCCEEeecCC----CCHHHHHHHHHCCCCEEEe------------cccccccCcCCC---
Confidence 34578888887765 4578999999998 5788878888777543221 112233333332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecC---HhhHHHHHH
Q 018946 236 DEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGS---QSGVAGAQR 312 (348)
Q Consensus 236 ~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs---~~Di~aA~~ 312 (348)
+|.. ++...++..++ +.|+-+ ++|...|.+
T Consensus 163 -----------------------------n~~~--------------l~~i~~~~~vP----vIvDAGiG~pSdaa~AME 195 (247)
T PF05690_consen 163 -----------------------------NPYN--------------LRIIIERADVP----VIVDAGIGTPSDAAQAME 195 (247)
T ss_dssp -----------------------------THHH--------------HHHHHHHGSSS----BEEES---SHHHHHHHHH
T ss_pred -----------------------------CHHH--------------HHHHHHhcCCc----EEEeCCCCCHHHHHHHHH
Confidence 1222 78888899886 677664 689999999
Q ss_pred cCCcEEEECCCC
Q 018946 313 IGMPCVVMRSRC 324 (348)
Q Consensus 313 aG~~~i~v~~~~ 324 (348)
.|+..|++++..
T Consensus 196 lG~daVLvNTAi 207 (247)
T PF05690_consen 196 LGADAVLVNTAI 207 (247)
T ss_dssp TT-SEEEESHHH
T ss_pred cCCceeehhhHH
Confidence 999999999854
No 254
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=64.80 E-value=24 Score=38.23 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.3
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeC
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTA 185 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn 185 (348)
.+..+|+-.|+.||++|+++..+|+
T Consensus 658 kLQ~dVk~tLElLRNAgikiWMLTG 682 (1051)
T KOG0210|consen 658 KLQDDVKPTLELLRNAGIKIWMLTG 682 (1051)
T ss_pred HHhhhhHhHHHHHhhcCcEEEEEcC
Confidence 4677888899999999999999998
No 255
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=64.72 E-value=18 Score=40.22 Aligned_cols=39 Identities=10% Similarity=-0.072 Sum_probs=29.3
Q ss_pred hhhHHHHHHHHHH---HHcCCCCCcEEEEecCHhhHHHHHHcC
Q 018946 275 SLDKIVAALRAGA---EYAEKPVRNCFLIAGSQSGVAGAQRIG 314 (348)
Q Consensus 275 ~~~~~~~~~~~a~---~~lgv~p~~~i~VGDs~~Di~aA~~aG 314 (348)
...|+.+ ++.++ +.+|..++.+++|||..+|..+-+.++
T Consensus 760 gvnKG~A-l~~Ll~~~~~~g~~~d~vl~~GDD~nDedMF~~~~ 801 (854)
T PLN02205 760 GVSKGLV-AKRLLSIMQERGMLPDFVLCIGDDRSDEDMFEVIT 801 (854)
T ss_pred CCCHHHH-HHHHHHHHHhcCCCcccEEEEcCCccHHHHHHHhh
Confidence 3445543 34443 557999999999999999999988776
No 256
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=64.58 E-value=24 Score=34.30 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=31.8
Q ss_pred cCCCCCCCcHHHHHHHHHHCC-CcEEEEeCCCCCCchHHHHHHHHcC
Q 018946 157 SKDAPLRPGVEDFVDDAYNEG-IPLIVLTAYGKSGDRIARSVVEKLG 202 (348)
Q Consensus 157 ~~~~~l~pGv~elL~~Lk~~G-i~vaIvTn~~~~~~~~~~~il~~lg 202 (348)
++.-.+.|..-++++.+++.| ++++|+||+.. ..+++.+.
T Consensus 88 ~GEPTLy~~L~elI~~~k~~g~~~tflvTNgsl------pdv~~~L~ 128 (296)
T COG0731 88 SGEPTLYPNLGELIEEIKKRGKKTTFLVTNGSL------PDVLEELK 128 (296)
T ss_pred CCCcccccCHHHHHHHHHhcCCceEEEEeCCCh------HHHHHHhc
Confidence 445568999999999999999 79999999732 45555554
No 257
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=63.57 E-value=12 Score=36.42 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=31.1
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCccc
Q 018946 166 VEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERI 206 (348)
Q Consensus 166 v~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~ 206 (348)
+.+.|++|+++|++++++|+. ....+..+.+.+++..+
T Consensus 23 a~~aL~~Lk~~GI~vVlaTGR---t~~ev~~l~~~Lgl~~p 60 (302)
T PRK12702 23 ARQALAALERRSIPLVLYSLR---TRAQLEHLCRQLRLEHP 60 (302)
T ss_pred HHHHHHHHHHCCCEEEEEcCC---CHHHHHHHHHHhCCCCe
Confidence 346789999999999999995 45677888899998753
No 258
>PLN02580 trehalose-phosphatase
Probab=63.51 E-value=17 Score=36.65 Aligned_cols=30 Identities=7% Similarity=-0.089 Sum_probs=25.4
Q ss_pred HHHHHHHcCCCCCc---EEEEecCHhhHHHHHH
Q 018946 283 LRAGAEYAEKPVRN---CFLIAGSQSGVAGAQR 312 (348)
Q Consensus 283 ~~~a~~~lgv~p~~---~i~VGDs~~Di~aA~~ 312 (348)
.+.+++.+|++..+ .++|||..+|..+.+.
T Consensus 306 v~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~ 338 (384)
T PLN02580 306 VEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKV 338 (384)
T ss_pred HHHHHHhcCCCcccceeEEEECCCchHHHHHHh
Confidence 78888999988663 3899999999998885
No 259
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=63.12 E-value=62 Score=30.84 Aligned_cols=101 Identities=19% Similarity=0.269 Sum_probs=69.3
Q ss_pred CCCCCcHHHHHHHH---HHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCch
Q 018946 160 APLRPGVEDFVDDA---YNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVD 236 (348)
Q Consensus 160 ~~l~pGv~elL~~L---k~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~ 236 (348)
-.+.|+..++++.. -++|+.|.-.++ .+..+-.-++..|-.-.. ..-..|-+|.|+.
T Consensus 117 ~~LlPD~~etl~Aae~Lv~eGF~VlPY~~----~D~v~a~rLed~Gc~aVM------------PlgsPIGSg~Gl~---- 176 (267)
T CHL00162 117 KYLLPDPIGTLKAAEFLVKKGFTVLPYIN----ADPMLAKHLEDIGCATVM------------PLGSPIGSGQGLQ---- 176 (267)
T ss_pred cccCCChHHHHHHHHHHHHCCCEEeecCC----CCHHHHHHHHHcCCeEEe------------eccCcccCCCCCC----
Confidence 45788888877654 578999999998 577777777777754322 1122333444432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecC---HhhHHHHHHc
Q 018946 237 EQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGS---QSGVAGAQRI 313 (348)
Q Consensus 237 ~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs---~~Di~aA~~a 313 (348)
+|.. ++...+...++ +++|-+ ++|+..|.+.
T Consensus 177 ----------------------------n~~~--------------l~~i~e~~~vp----VivdAGIgt~sDa~~AmEl 210 (267)
T CHL00162 177 ----------------------------NLLN--------------LQIIIENAKIP----VIIDAGIGTPSEASQAMEL 210 (267)
T ss_pred ----------------------------CHHH--------------HHHHHHcCCCc----EEEeCCcCCHHHHHHHHHc
Confidence 2222 66677776655 777764 6799999999
Q ss_pred CCcEEEECCCCCC
Q 018946 314 GMPCVVMRSRCIT 326 (348)
Q Consensus 314 G~~~i~v~~~~~~ 326 (348)
|...|+++++...
T Consensus 211 GaDgVL~nSaIak 223 (267)
T CHL00162 211 GASGVLLNTAVAQ 223 (267)
T ss_pred CCCEEeecceeec
Confidence 9999999997653
No 260
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=62.72 E-value=3.3 Score=38.26 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=12.6
Q ss_pred EEEecCCcccccccc
Q 018946 87 VLLEVDGVLVDAYRF 101 (348)
Q Consensus 87 viFDvDGTL~d~~~~ 101 (348)
++||+||||++....
T Consensus 1 ~lfD~DGvL~~~~~~ 15 (236)
T TIGR01460 1 FLFDIDGVLWLGHKP 15 (236)
T ss_pred CEEeCcCccCcCCcc
Confidence 589999999997654
No 261
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=62.64 E-value=17 Score=39.40 Aligned_cols=36 Identities=3% Similarity=0.032 Sum_probs=26.5
Q ss_pred CCCcHHHHHHHHHH-CCCcEEEEeCCCCCCchHHHHHHHH
Q 018946 162 LRPGVEDFVDDAYN-EGIPLIVLTAYGKSGDRIARSVVEK 200 (348)
Q Consensus 162 l~pGv~elL~~Lk~-~Gi~vaIvTn~~~~~~~~~~~il~~ 200 (348)
+.+.+.+.|+.|.+ .|+.|+|+|+. ....++..+..
T Consensus 515 ~~~~~~~~L~~L~~d~g~~V~ivSGR---~~~~l~~~~~~ 551 (726)
T PRK14501 515 PDKELRDLLRRLAADPNTDVAIISGR---DRDTLERWFGD 551 (726)
T ss_pred CCHHHHHHHHHHHcCCCCeEEEEeCC---CHHHHHHHhCC
Confidence 45788999999999 49999999995 33444444433
No 262
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=62.37 E-value=4.8 Score=40.99 Aligned_cols=34 Identities=9% Similarity=0.093 Sum_probs=24.4
Q ss_pred HHHHHHHcCCCCCcEE-EEecCHhhHHHHHHcCCc
Q 018946 283 LRAGAEYAEKPVRNCF-LIAGSQSGVAGAQRIGMP 316 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i-~VGDs~~Di~aA~~aG~~ 316 (348)
|..-++.++..+.--+ -+|....|+.+=..+|++
T Consensus 482 yLndl~slf~e~~PFyAGFGNriTDvisY~~vgIp 516 (580)
T COG5083 482 YLNDLKSLFIEFDPFYAGFGNRITDVISYSNVGIP 516 (580)
T ss_pred HHHHHHHhhCcCChhhccccccchhheeeccccCC
Confidence 5555555665555433 688899999999999985
No 263
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=61.77 E-value=13 Score=33.18 Aligned_cols=41 Identities=17% Similarity=0.373 Sum_probs=35.4
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCc
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 204 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~ 204 (348)
.+.|...+.|+.|+++|++++++|+. ....+..++..+++.
T Consensus 15 ~i~~~~~~al~~l~~~g~~~~i~TGR---~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 15 KISPETIEALKELQEKGIKLVIATGR---SYSSIKRLLKELGID 55 (254)
T ss_dssp SSCHHHHHHHHHHHHTTCEEEEECSS---THHHHHHHHHHTTHC
T ss_pred eeCHHHHHHHHhhcccceEEEEEccC---cccccccccccccch
Confidence 46789999999999999999999995 456788888888876
No 264
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=60.11 E-value=68 Score=33.76 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=26.1
Q ss_pred HHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEECC
Q 018946 285 AGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRS 322 (348)
Q Consensus 285 ~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~~ 322 (348)
.-++..|++ ++|||+.. ...|.++|+..+++.+
T Consensus 149 ~~lk~~G~~----~vvG~~~~-~~~A~~~g~~g~~~~s 181 (538)
T PRK15424 149 NELKANGIE----AVVGAGLI-TDLAEEAGMTGIFIYS 181 (538)
T ss_pred HHHHHCCCC----EEEcCchH-HHHHHHhCCceEEecC
Confidence 334557776 88999766 7889999999999875
No 265
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=58.97 E-value=9.1 Score=35.21 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=20.2
Q ss_pred CceEEEEecCCccccccccChHHHHHHHHHH
Q 018946 83 RDLAVLLEVDGVLVDAYRFGNRQAFNVAFQK 113 (348)
Q Consensus 83 ~~kaviFDvDGTL~d~~~~~~~~a~~~~~~~ 113 (348)
+.-.++||+||||+.+... ...-+.+.+++
T Consensus 10 ~~~l~lfdvdgtLt~~r~~-~~~e~~~~l~~ 39 (252)
T KOG3189|consen 10 EETLCLFDVDGTLTPPRQK-VTPEMLEFLQK 39 (252)
T ss_pred CceEEEEecCCcccccccc-CCHHHHHHHHH
Confidence 3458999999999987654 33444444444
No 266
>PRK06769 hypothetical protein; Validated
Probab=58.86 E-value=9.4 Score=33.52 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=13.1
Q ss_pred CceEEEEecCCcccc
Q 018946 83 RDLAVLLEVDGVLVD 97 (348)
Q Consensus 83 ~~kaviFDvDGTL~d 97 (348)
.+|+++||.||||..
T Consensus 3 ~~~~~~~d~d~~~~~ 17 (173)
T PRK06769 3 NIQAIFIDRDGTIGG 17 (173)
T ss_pred CCcEEEEeCCCcccC
Confidence 578999999999954
No 267
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=58.41 E-value=38 Score=33.41 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=28.6
Q ss_pred CCCCCcHHHHHHHHHHCC-CcEEEEeCCCCCCchHHHHHHH
Q 018946 160 APLRPGVEDFVDDAYNEG-IPLIVLTAYGKSGDRIARSVVE 199 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~G-i~vaIvTn~~~~~~~~~~~il~ 199 (348)
-+++|||..+.+.|.+.| .++..+||+ .......|.
T Consensus 195 r~~ipGV~~~yr~l~~~~~apvfYvSnS----Pw~~f~~L~ 231 (373)
T COG4850 195 RQVIPGVSAWYRALTNLGDAPVFYVSNS----PWQLFPTLQ 231 (373)
T ss_pred cCCCCCHHHHHHHHHhcCCCCeEEecCC----hhHhHHHHH
Confidence 467999999999999998 999999995 344444444
No 268
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=58.24 E-value=9.2 Score=33.47 Aligned_cols=19 Identities=26% Similarity=0.174 Sum_probs=15.4
Q ss_pred CCceEEEEecCCccccccc
Q 018946 82 PRDLAVLLEVDGVLVDAYR 100 (348)
Q Consensus 82 ~~~kaviFDvDGTL~d~~~ 100 (348)
..+++|++|+||||++...
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~ 41 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDH 41 (170)
T ss_pred CCCCEEEEecCCccccCCC
Confidence 4567999999999997543
No 269
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=57.30 E-value=4.6 Score=36.96 Aligned_cols=15 Identities=13% Similarity=0.361 Sum_probs=12.3
Q ss_pred EEEEecCCccccccc
Q 018946 86 AVLLEVDGVLVDAYR 100 (348)
Q Consensus 86 aviFDvDGTL~d~~~ 100 (348)
+|++|+||||++...
T Consensus 1 li~~DlDgTLl~~~~ 15 (236)
T TIGR02471 1 LIITDLDNTLLGDDE 15 (236)
T ss_pred CeEEeccccccCCHH
Confidence 478999999998643
No 270
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=56.17 E-value=42 Score=33.26 Aligned_cols=37 Identities=8% Similarity=0.100 Sum_probs=24.2
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhh--HHHHHHcCCcEEEEC
Q 018946 283 LRAGAEYAEKPVRNCFLIAGSQSG--VAGAQRIGMPCVVMR 321 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGDs~~D--i~aA~~aG~~~i~v~ 321 (348)
+...+++++ |+.|++|.|+..| +-...+.=.+.+.|+
T Consensus 90 ld~vl~~~~--~~~~i~VsDGaeDE~vlPiIqSr~~V~sV~ 128 (344)
T PF04123_consen 90 LDEVLSKFD--PDSAIVVSDGAEDERVLPIIQSRVPVDSVK 128 (344)
T ss_pred HHHHHHhCC--CCEEEEEecChhhhhhhHhhhccCceEEEE
Confidence 455556655 7799999999998 444444444554444
No 271
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=54.22 E-value=1.9e+02 Score=26.97 Aligned_cols=43 Identities=7% Similarity=-0.001 Sum_probs=33.9
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCC
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGS 203 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl 203 (348)
.+..+...++|+.+|+.|++.+++=|-.+ +-..+..+++.+++
T Consensus 92 ~E~~~~~~r~i~~Ik~~G~kaGv~lnP~T-p~~~i~~~l~~vD~ 134 (220)
T COG0036 92 AEATEHIHRTIQLIKELGVKAGLVLNPAT-PLEALEPVLDDVDL 134 (220)
T ss_pred eccCcCHHHHHHHHHHcCCeEEEEECCCC-CHHHHHHHHhhCCE
Confidence 34567899999999999999999999664 56666777776654
No 272
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=53.57 E-value=12 Score=42.19 Aligned_cols=42 Identities=17% Similarity=0.041 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCCCCcE-EEEecCHh-hHHHHHHcCCcEEEECC
Q 018946 281 AALRAGAEYAEKPVRNC-FLIAGSQS-GVAGAQRIGMPCVVMRS 322 (348)
Q Consensus 281 ~~~~~a~~~lgv~p~~~-i~VGDs~~-Di~aA~~aG~~~i~v~~ 322 (348)
.|++.++.++|++.+++ ||+|||.+ |++....--.++|++..
T Consensus 959 qAlRyL~~rwgi~l~~v~VfaGdSGntD~e~Ll~G~~~tvi~~g 1002 (1050)
T TIGR02468 959 QALRYLFVRWGIELANMAVFVGESGDTDYEGLLGGLHKTVILKG 1002 (1050)
T ss_pred HHHHHHHHHcCCChHHeEEEeccCCCCCHHHHhCCceeEEEEec
Confidence 45899999999999999 55999999 98877443346777766
No 273
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=51.21 E-value=32 Score=39.51 Aligned_cols=44 Identities=23% Similarity=0.150 Sum_probs=31.4
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEECC-CCCC
Q 018946 283 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRS-RCIT 326 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~~-~~~~ 326 (348)
-++.+++++.++.=..||=-+-++-.+-.-.|..||++-+ .++.
T Consensus 1315 RQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNP 1359 (1958)
T KOG0391|consen 1315 RQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNP 1359 (1958)
T ss_pred HHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCc
Confidence 5677899998888777777777766666777887766543 4443
No 274
>PLN02151 trehalose-phosphatase
Probab=51.07 E-value=12 Score=37.18 Aligned_cols=30 Identities=10% Similarity=-0.129 Sum_probs=21.0
Q ss_pred HHHHHHHcCCCCC---cEEEEecCHhhHHHHHH
Q 018946 283 LRAGAEYAEKPVR---NCFLIAGSQSGVAGAQR 312 (348)
Q Consensus 283 ~~~a~~~lgv~p~---~~i~VGDs~~Di~aA~~ 312 (348)
.+.+++.++..-. -.+||||-..|-.+-+.
T Consensus 274 v~~Ll~~~~~~~~~~~~pvyiGDD~TDEDaF~~ 306 (354)
T PLN02151 274 LEFLLESLGYANCTDVFPIYIGDDRTDEDAFKI 306 (354)
T ss_pred HHHHHHhcccccCCCCeEEEEcCCCcHHHHHHH
Confidence 6677788776533 27999998887665543
No 275
>PLN03017 trehalose-phosphatase
Probab=50.32 E-value=14 Score=36.97 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=0.0
Q ss_pred CceEEEEecCCccc----cccccChHHHHHHHHHHc
Q 018946 83 RDLAVLLEVDGVLV----DAYRFGNRQAFNVAFQKL 114 (348)
Q Consensus 83 ~~kaviFDvDGTL~----d~~~~~~~~a~~~~~~~~ 114 (348)
...+|+||+||||+ +...........++++++
T Consensus 110 k~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL~~L 145 (366)
T PLN03017 110 KQIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTVKKL 145 (366)
T ss_pred CCeEEEEecCCcCcCCcCCcccccCCHHHHHHHHHH
No 276
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=49.53 E-value=10 Score=36.26 Aligned_cols=43 Identities=7% Similarity=-0.047 Sum_probs=29.5
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhH---HHHHHcCCcEEEECCCCC
Q 018946 283 LRAGAEYAEKPVRNCFLIAGSQSGV---AGAQRIGMPCVVMRSRCI 325 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGDs~~Di---~aA~~aG~~~i~v~~~~~ 325 (348)
++..+++++....-.++.||-..|= .+....+-.+|.+..+.+
T Consensus 187 ~~~i~~~~~~~~~~~~~aGDD~TDE~~F~~v~~~~~~~v~v~~~~t 232 (266)
T COG1877 187 IKYIMDELPFDGRFPIFAGDDLTDEDAFAAVNKLDSITVKVGVGST 232 (266)
T ss_pred HHHHHhcCCCCCCcceecCCCCccHHHHHhhccCCCceEEecCCcc
Confidence 6677788777766799999987654 444444567777766543
No 277
>PLN02580 trehalose-phosphatase
Probab=49.49 E-value=10 Score=38.17 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=13.0
Q ss_pred ceEEEEecCCcccccc
Q 018946 84 DLAVLLEVDGVLVDAY 99 (348)
Q Consensus 84 ~kaviFDvDGTL~d~~ 99 (348)
..+++||+||||.+..
T Consensus 119 ~~~LfLDyDGTLaPIv 134 (384)
T PLN02580 119 KIALFLDYDGTLSPIV 134 (384)
T ss_pred CeEEEEecCCccCCCC
Confidence 4589999999998643
No 278
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=48.33 E-value=20 Score=33.54 Aligned_cols=25 Identities=0% Similarity=-0.012 Sum_probs=19.1
Q ss_pred cEEEEecCHhhHHHHHHcCCcEEEEC
Q 018946 296 NCFLIAGSQSGVAGAQRIGMPCVVMR 321 (348)
Q Consensus 296 ~~i~VGDs~~Di~aA~~aG~~~i~v~ 321 (348)
-++-+||+.||+... ..++.++.|.
T Consensus 211 ~t~~~GDg~nD~Pl~-ev~d~AfiV~ 235 (274)
T COG3769 211 TTLGLGDGPNDAPLL-EVMDYAFIVK 235 (274)
T ss_pred EEEecCCCCCcccHH-Hhhhhheeec
Confidence 489999999999865 5566666665
No 279
>PTZ00445 p36-lilke protein; Provisional
Probab=48.19 E-value=13 Score=34.50 Aligned_cols=37 Identities=3% Similarity=-0.013 Sum_probs=24.9
Q ss_pred CCceEEEEecCCccccc-----cc------------cChHHHHHHHHHHcCCCC
Q 018946 82 PRDLAVLLEVDGVLVDA-----YR------------FGNRQAFNVAFQKLGLDC 118 (348)
Q Consensus 82 ~~~kaviFDvDGTL~d~-----~~------------~~~~~a~~~~~~~~gl~~ 118 (348)
..+|+|++|+|.||+.. .. ......|...+.+.|+..
T Consensus 41 ~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v 94 (219)
T PTZ00445 41 CGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKI 94 (219)
T ss_pred cCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeE
Confidence 35789999999999981 11 012356666666777765
No 280
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=47.72 E-value=29 Score=33.93 Aligned_cols=27 Identities=15% Similarity=0.312 Sum_probs=24.6
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCC
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYG 187 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~ 187 (348)
-++|.+.++++.++++|+.+.|.|||.
T Consensus 142 lL~p~l~eli~~~k~~Gi~~~L~TNG~ 168 (322)
T PRK13762 142 TLYPYLPELIEEFHKRGFTTFLVTNGT 168 (322)
T ss_pred cchhhHHHHHHHHHHcCCCEEEECCCC
Confidence 357899999999999999999999984
No 281
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=47.68 E-value=30 Score=30.57 Aligned_cols=36 Identities=11% Similarity=0.286 Sum_probs=28.4
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHc
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKL 201 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~l 201 (348)
.|.+.+.|++|+++|++++++|+. ....+..+++.+
T Consensus 19 ~~~~~~~l~~l~~~g~~~~i~TGR---~~~~~~~~~~~~ 54 (204)
T TIGR01484 19 SPETIEALERLREAGVKVVLVTGR---SLAEIKELLKQL 54 (204)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCC---CHHHHHHHHHhC
Confidence 467778999999999999999995 456666666654
No 282
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=47.10 E-value=59 Score=36.08 Aligned_cols=41 Identities=27% Similarity=0.442 Sum_probs=35.2
Q ss_pred CCCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCC
Q 018946 160 APLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGS 203 (348)
Q Consensus 160 ~~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl 203 (348)
-|+++.+.+.+..||++|+++..+|+ .....+.++.+.-|+
T Consensus 589 dPPR~~vP~Av~~CrsAGIkvimVTg---dhpiTAkAiA~~vgI 629 (1019)
T KOG0203|consen 589 DPPRAAVPDAVGKCRSAGIKVIMVTG---DHPITAKAIAKSVGI 629 (1019)
T ss_pred CCCcccCchhhhhhhhhCceEEEEec---Cccchhhhhhhheee
Confidence 47899999999999999999999998 356777778777775
No 283
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=46.92 E-value=13 Score=31.76 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.9
Q ss_pred ceEEEEecCCcccccc
Q 018946 84 DLAVLLEVDGVLVDAY 99 (348)
Q Consensus 84 ~kaviFDvDGTL~d~~ 99 (348)
.+.+++|+||||+.+.
T Consensus 2 k~~lvldld~tl~~~~ 17 (148)
T smart00577 2 KKTLVLDLDETLVHST 17 (148)
T ss_pred CcEEEEeCCCCeECCC
Confidence 3589999999999975
No 284
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=46.48 E-value=31 Score=29.76 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=25.9
Q ss_pred CcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHH
Q 018946 164 PGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEK 200 (348)
Q Consensus 164 pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~ 200 (348)
+.+.++++.++++|+++.+.||+. .+.....+++.
T Consensus 75 ~~l~~ll~~lk~~Gl~i~l~Tg~~--~~~~~~~il~~ 109 (147)
T TIGR02826 75 EALLSLLKIFKEKGLKTCLYTGLE--PKDIPLELVQH 109 (147)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC--CHHHHHHHHHh
Confidence 567789999999999999999963 33444444444
No 285
>PRK08005 epimerase; Validated
Probab=45.35 E-value=1.1e+02 Score=27.99 Aligned_cols=37 Identities=8% Similarity=-0.108 Sum_probs=26.8
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHH
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEK 200 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~ 200 (348)
.+...++|+.+|+.|.+.+|.=|..+ +-..+..++..
T Consensus 92 ~~~~~~~l~~Ik~~G~k~GlAlnP~T-p~~~i~~~l~~ 128 (210)
T PRK08005 92 VQNPSEILADIRAIGAKAGLALNPAT-PLLPYRYLALQ 128 (210)
T ss_pred ccCHHHHHHHHHHcCCcEEEEECCCC-CHHHHHHHHHh
Confidence 35678999999999999999988643 34444444443
No 286
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=45.16 E-value=13 Score=32.53 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=13.0
Q ss_pred eEEEEecCCcccccc
Q 018946 85 LAVLLEVDGVLVDAY 99 (348)
Q Consensus 85 kaviFDvDGTL~d~~ 99 (348)
++++||.||||++.-
T Consensus 2 ~~~~~d~dg~l~~~~ 16 (161)
T TIGR01261 2 KILFIDRDGTLIEEP 16 (161)
T ss_pred CEEEEeCCCCccccC
Confidence 589999999999843
No 287
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=43.96 E-value=82 Score=26.43 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=23.9
Q ss_pred HHHHHHHcCCCCCcEEEE----ecCHhh---HHHHHHcCCcEEEEC
Q 018946 283 LRAGAEYAEKPVRNCFLI----AGSQSG---VAGAQRIGMPCVVMR 321 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~V----GDs~~D---i~aA~~aG~~~i~v~ 321 (348)
.+.....+.+.|.+++++ |.+++= ++.|++.||.+|.+.
T Consensus 92 ~~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 92 ARQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp HHHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 355566777889888877 445553 566778899999874
No 288
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=43.01 E-value=1.7e+02 Score=27.69 Aligned_cols=102 Identities=21% Similarity=0.277 Sum_probs=69.7
Q ss_pred CCCCCCcHHHHHHHH---HHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCc
Q 018946 159 DAPLRPGVEDFVDDA---YNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGV 235 (348)
Q Consensus 159 ~~~l~pGv~elL~~L---k~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~ 235 (348)
.-.+.|+..++++.+ -++|+.|.-.++ .+..+-+.++..|-.-.+. .-..|-+|.|...
T Consensus 109 ~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~----dD~v~arrLee~GcaavMP------------l~aPIGSg~G~~n-- 170 (262)
T COG2022 109 EKTLLPDPIETLKAAEQLVKEGFVVLPYTT----DDPVLARRLEEAGCAAVMP------------LGAPIGSGLGLQN-- 170 (262)
T ss_pred CcccCCChHHHHHHHHHHHhCCCEEeeccC----CCHHHHHHHHhcCceEecc------------ccccccCCcCcCC--
Confidence 346789988887765 467999999998 4677777777666533221 1223333433321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecC---HhhHHHHHH
Q 018946 236 DEQLATEARKAVSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGS---QSGVAGAQR 312 (348)
Q Consensus 236 ~~~~~~~~~k~~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs---~~Di~aA~~ 312 (348)
|.. ++...++..++ +.|+-+ ++|...|.+
T Consensus 171 ------------------------------~~~--------------l~iiie~a~VP----viVDAGiG~pSdAa~aME 202 (262)
T COG2022 171 ------------------------------PYN--------------LEIIIEEADVP----VIVDAGIGTPSDAAQAME 202 (262)
T ss_pred ------------------------------HHH--------------HHHHHHhCCCC----EEEeCCCCChhHHHHHHh
Confidence 111 77778888887 777764 689999999
Q ss_pred cCCcEEEECCCCCC
Q 018946 313 IGMPCVVMRSRCIT 326 (348)
Q Consensus 313 aG~~~i~v~~~~~~ 326 (348)
.|...|++++....
T Consensus 203 lG~DaVL~NTAiA~ 216 (262)
T COG2022 203 LGADAVLLNTAIAR 216 (262)
T ss_pred cccceeehhhHhhc
Confidence 99999999986543
No 289
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=42.13 E-value=48 Score=32.74 Aligned_cols=43 Identities=19% Similarity=0.205 Sum_probs=30.6
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCc
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 204 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~ 204 (348)
-++|++.++++.+++.|+.+.+.||+..-.++.+ ..+...|++
T Consensus 74 ll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~-~~L~~~g~~ 116 (378)
T PRK05301 74 LLRKDLEELVAHARELGLYTNLITSGVGLTEARL-AALKDAGLD 116 (378)
T ss_pred CCchhHHHHHHHHHHcCCcEEEECCCccCCHHHH-HHHHHcCCC
Confidence 3578999999999999999999999853122333 334455654
No 290
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=42.02 E-value=1.3e+02 Score=29.07 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=33.5
Q ss_pred HHHHHHHcCCCCCcEEEEec--CHhhHHHHHHcCCcEEEECCCCCCcccccc
Q 018946 283 LRAGAEYAEKPVRNCFLIAG--SQSGVAGAQRIGMPCVVMRSRCITTLPVSK 332 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGD--s~~Di~aA~~aG~~~i~v~~~~~~~~~l~~ 332 (348)
+..+.+..+++ +|.-|+ ...|+.++...|...|++.+.+....+-..
T Consensus 153 l~~v~~~~~iP---viaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t~Es~~ 201 (307)
T TIGR03151 153 VPQVVDAVSIP---VIAAGGIADGRGMAAAFALGAEAVQMGTRFLCAKECNV 201 (307)
T ss_pred HHHHHHHhCCC---EEEECCCCCHHHHHHHHHcCCCEeecchHHhcccccCC
Confidence 55555666654 667776 346899999999999999987766554433
No 291
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=41.89 E-value=50 Score=32.24 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=29.7
Q ss_pred CCCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCc
Q 018946 162 LRPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSE 204 (348)
Q Consensus 162 l~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~ 204 (348)
++|++.++++.+++.|+.+.+.||+..-.++.++. +...|++
T Consensus 66 l~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~-L~~~g~~ 107 (358)
T TIGR02109 66 ARPDLVELVAHARRLGLYTNLITSGVGLTEARLDA-LADAGLD 107 (358)
T ss_pred ccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHH-HHhCCCC
Confidence 57889999999999999999999985312333333 3345554
No 292
>PLN02382 probable sucrose-phosphatase
Probab=41.48 E-value=29 Score=35.08 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=13.2
Q ss_pred CceEEEEecCCccccc
Q 018946 83 RDLAVLLEVDGVLVDA 98 (348)
Q Consensus 83 ~~kaviFDvDGTL~d~ 98 (348)
+...|+-|+||||++.
T Consensus 8 ~~~lI~sDLDGTLL~~ 23 (413)
T PLN02382 8 PRLMIVSDLDHTMVDH 23 (413)
T ss_pred CCEEEEEcCCCcCcCC
Confidence 3457888999999986
No 293
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=40.94 E-value=3e+02 Score=25.47 Aligned_cols=37 Identities=11% Similarity=-0.028 Sum_probs=27.1
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHH
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEK 200 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~ 200 (348)
.+...++|+.+|+.|++.+|+=|..+ +...+..++..
T Consensus 96 ~~~~~~~l~~Ir~~g~k~GlalnP~T-~~~~i~~~l~~ 132 (223)
T PRK08745 96 SRHVHRTIQLIKSHGCQAGLVLNPAT-PVDILDWVLPE 132 (223)
T ss_pred cccHHHHHHHHHHCCCceeEEeCCCC-CHHHHHHHHhh
Confidence 35678999999999999999999643 34444444443
No 294
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=40.05 E-value=1.2e+02 Score=29.70 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=26.8
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHH-HHHHcCCcEEEECCCCCCcc
Q 018946 283 LRAGAEYAEKPVRNCFLIAGSQSGVA-GAQRIGMPCVVMRSRCITTL 328 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGDs~~Di~-aA~~aG~~~i~v~~~~~~~~ 328 (348)
|..+++... ++||||. +|. -|.-.|.++|.+++...+.+
T Consensus 252 ~l~ll~~a~------~vvgdSs-GI~eEa~~lg~P~v~iR~~geRqe 291 (346)
T PF02350_consen 252 YLSLLKNAD------LVVGDSS-GIQEEAPSLGKPVVNIRDSGERQE 291 (346)
T ss_dssp HHHHHHHES------EEEESSH-HHHHHGGGGT--EEECSSS-S-HH
T ss_pred HHHHHhcce------EEEEcCc-cHHHHHHHhCCeEEEecCCCCCHH
Confidence 555555444 7899999 988 99999999999976544444
No 295
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=39.76 E-value=2.5e+02 Score=27.70 Aligned_cols=36 Identities=6% Similarity=0.245 Sum_probs=29.5
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcc
Q 018946 166 VEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 205 (348)
Q Consensus 166 v~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~ 205 (348)
.+.++.+|+++|+.|.|.+- .-..+..+++.+|++.
T Consensus 16 Fk~~I~eL~~~GheV~it~R----~~~~~~~LL~~yg~~y 51 (335)
T PF04007_consen 16 FKNIIRELEKRGHEVLITAR----DKDETEELLDLYGIDY 51 (335)
T ss_pred HHHHHHHHHhCCCEEEEEEe----ccchHHHHHHHcCCCe
Confidence 45689999999999998886 2467788999999865
No 296
>PLN02334 ribulose-phosphate 3-epimerase
Probab=38.64 E-value=1.9e+02 Score=26.42 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=24.2
Q ss_pred cEEEEec-CHhhHHHHHHcCCcEEEECCCCCC
Q 018946 296 NCFLIAG-SQSGVAGAQRIGMPCVVMRSRCIT 326 (348)
Q Consensus 296 ~~i~VGD-s~~Di~aA~~aG~~~i~v~~~~~~ 326 (348)
.++++|. +..++....++|...+.+.+....
T Consensus 176 ~I~a~GGI~~e~i~~l~~aGad~vvvgsai~~ 207 (229)
T PLN02334 176 DIEVDGGVGPSTIDKAAEAGANVIVAGSAVFG 207 (229)
T ss_pred cEEEeCCCCHHHHHHHHHcCCCEEEEChHHhC
Confidence 4556655 567999999999999999886544
No 297
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=38.28 E-value=18 Score=40.20 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=14.4
Q ss_pred CceEEEEecCCcccccc
Q 018946 83 RDLAVLLEVDGVLVDAY 99 (348)
Q Consensus 83 ~~kaviFDvDGTL~d~~ 99 (348)
..++|++|+||||++..
T Consensus 595 ~~rlI~LDyDGTLlp~~ 611 (854)
T PLN02205 595 TTRAILLDYDGTLMPQA 611 (854)
T ss_pred cCeEEEEecCCcccCCc
Confidence 45799999999999654
No 298
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=37.79 E-value=2.5e+02 Score=25.96 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=23.8
Q ss_pred EEEEecCH---hhHHHHHHcCCcEEEECCCCC
Q 018946 297 CFLIAGSQ---SGVAGAQRIGMPCVVMRSRCI 325 (348)
Q Consensus 297 ~i~VGDs~---~Di~aA~~aG~~~i~v~~~~~ 325 (348)
.+.+|-+. .++..+.++|...+++.+..-
T Consensus 187 ~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~ 218 (244)
T PRK13125 187 YLVVGFGLDSPEDARDALSAGADGVVVGTAFI 218 (244)
T ss_pred CEEEeCCcCCHHHHHHHHHcCCCEEEECHHHH
Confidence 47888876 589988999999999998654
No 299
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=36.87 E-value=2.9e+02 Score=27.10 Aligned_cols=64 Identities=8% Similarity=0.046 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCCCCcEEEEecCHh---hHHHHHHcCCcEEEECCCCCCcccc-cccccchhHHHHhhcc
Q 018946 281 AALRAGAEYAEKPVRNCFLIAGSQS---GVAGAQRIGMPCVVMRSRCITTLPV-SKTQRLADMLCRILKS 346 (348)
Q Consensus 281 ~~~~~a~~~lgv~p~~~i~VGDs~~---Di~aA~~aG~~~i~v~~~~~~~~~l-~~~~~~~d~l~~~l~~ 346 (348)
..+....++. .|+=+++.||... ...+|...+++.+.+..|..+.+.- ...+....++++.+..
T Consensus 57 ~~~~~~~~~~--~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaGlRs~d~~~g~~de~~R~~i~~la~ 124 (346)
T PF02350_consen 57 IELADVLERE--KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAGLRSGDRTEGMPDEINRHAIDKLAH 124 (346)
T ss_dssp HHHHHHHHHH--T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES-----S-TTSSTTHHHHHHHHHHH-S
T ss_pred HHHHHHHHhc--CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCCCCccccCCCCchhhhhhhhhhhhh
Confidence 3344555555 5899999999864 6677888899999999885554333 2333346666665543
No 300
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=36.16 E-value=32 Score=31.94 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=23.1
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCCC
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAYG 187 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~~ 187 (348)
+++..++++.+++.|+++.|-|||.
T Consensus 86 ~~~l~~li~~l~~~g~~v~leTNGt 110 (238)
T TIGR03365 86 QKPLGELIDLGKAKGYRFALETQGS 110 (238)
T ss_pred hHhHHHHHHHHHHCCCCEEEECCCC
Confidence 5789999999999999999999984
No 301
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=35.75 E-value=17 Score=33.34 Aligned_cols=10 Identities=40% Similarity=0.743 Sum_probs=0.0
Q ss_pred EEecCCcccc
Q 018946 88 LLEVDGVLVD 97 (348)
Q Consensus 88 iFDvDGTL~d 97 (348)
+||+||||.+
T Consensus 1 ~lDyDGTL~p 10 (235)
T PF02358_consen 1 FLDYDGTLAP 10 (235)
T ss_dssp EEE-TTTSS-
T ss_pred CcccCCccCC
No 302
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=34.81 E-value=23 Score=30.80 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=13.8
Q ss_pred eEEEEecCCccccccc
Q 018946 85 LAVLLEVDGVLVDAYR 100 (348)
Q Consensus 85 kaviFDvDGTL~d~~~ 100 (348)
+.+++|+|+||+.+..
T Consensus 2 ~~lvlDLDeTLi~~~~ 17 (162)
T TIGR02251 2 KTLVLDLDETLVHSTF 17 (162)
T ss_pred cEEEEcCCCCcCCCCC
Confidence 4789999999998864
No 303
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=34.53 E-value=53 Score=25.24 Aligned_cols=36 Identities=25% Similarity=0.296 Sum_probs=32.0
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEE
Q 018946 283 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 318 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i 318 (348)
++.++|.+++++..+..|-+...+|.-++.+|--..
T Consensus 32 lkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvfl 67 (82)
T cd01766 32 LKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFL 67 (82)
T ss_pred HHHHHHhcCCCccceeEEecCccccChhhcccceee
Confidence 899999999999999999998999999999986443
No 304
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=34.40 E-value=87 Score=27.40 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=23.1
Q ss_pred CCCcHHHHHHHHHHCCCcEEEEeCCC
Q 018946 162 LRPGVEDFVDDAYNEGIPLIVLTAYG 187 (348)
Q Consensus 162 l~pGv~elL~~Lk~~Gi~vaIvTn~~ 187 (348)
++|.+.++++.+++.|+.+.+.||+.
T Consensus 75 l~~~l~~li~~~~~~g~~v~i~TNg~ 100 (191)
T TIGR02495 75 LQAGLPDFLRKVRELGFEVKLDTNGS 100 (191)
T ss_pred CcHhHHHHHHHHHHCCCeEEEEeCCC
Confidence 46778899999999999999999984
No 305
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=34.10 E-value=2e+02 Score=29.07 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=27.8
Q ss_pred CCCCCcEEEEecC--HhhHHHHHHcCCcEEEECC
Q 018946 291 EKPVRNCFLIAGS--QSGVAGAQRIGMPCVVMRS 322 (348)
Q Consensus 291 gv~p~~~i~VGDs--~~Di~aA~~aG~~~i~v~~ 322 (348)
|.+|++++|-|.. ..+|..|.+.|+.+|.+.+
T Consensus 93 G~~~~~I~f~g~~ks~~ei~~a~e~gi~~i~vdS 126 (394)
T COG0019 93 GFPPERIVFSGPAKSEEEIAFALELGIKLINVDS 126 (394)
T ss_pred CCChhhEEECCCCCCHHHHHHHHHcCCcEEEeCC
Confidence 9999999999985 4689999999999888875
No 306
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=34.03 E-value=27 Score=33.73 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=16.1
Q ss_pred CCCceEEEEecCCccccccc
Q 018946 81 PPRDLAVLLEVDGVLVDAYR 100 (348)
Q Consensus 81 ~~~~kaviFDvDGTL~d~~~ 100 (348)
...+..|+||+|.||+..+.
T Consensus 119 ~~~phVIVfDlD~TLItd~~ 138 (297)
T PF05152_consen 119 WEPPHVIVFDLDSTLITDEG 138 (297)
T ss_pred CCCCcEEEEECCCcccccCC
Confidence 44567999999999997654
No 307
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=33.51 E-value=76 Score=29.10 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=26.9
Q ss_pred CCCc-HHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHH
Q 018946 162 LRPG-VEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVE 199 (348)
Q Consensus 162 l~pG-v~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~ 199 (348)
++++ +.++++.++++|+.+++.|||.. +......++.
T Consensus 51 lq~~fl~~l~~~~k~~gi~~~leTnG~~-~~~~~~~l~~ 88 (213)
T PRK10076 51 MQAEFATRFLQRLRLWGVSCAIETAGDA-PASKLLPLAK 88 (213)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCC-CHHHHHHHHH
Confidence 4566 68999999999999999999853 2233444443
No 308
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=33.35 E-value=29 Score=30.19 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=15.9
Q ss_pred CceEEEEecCCcccccccc
Q 018946 83 RDLAVLLEVDGVLVDAYRF 101 (348)
Q Consensus 83 ~~kaviFDvDGTL~d~~~~ 101 (348)
....+++|+|.||+.+...
T Consensus 5 ~kl~LVLDLDeTLihs~~~ 23 (156)
T TIGR02250 5 KKLHLVLDLDQTLIHTTKD 23 (156)
T ss_pred CceEEEEeCCCCccccccc
Confidence 3568999999999998764
No 309
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=33.05 E-value=48 Score=30.50 Aligned_cols=38 Identities=11% Similarity=0.077 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcc
Q 018946 165 GVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 205 (348)
Q Consensus 165 Gv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~ 205 (348)
...+++++++++|++++++|+. ....++.+.+.+++..
T Consensus 25 ~~~~~i~~~~~~gi~fv~aTGR---~~~~~~~~~~~~~~~~ 62 (249)
T TIGR01485 25 RLNALLEDHRGEDSLLVYSTGR---SPHSYKELQKQKPLLT 62 (249)
T ss_pred HHHHHHHHhhccCceEEEEcCC---CHHHHHHHHhcCCCCC
Confidence 3446778888999999999995 4566777777777653
No 310
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=32.56 E-value=4.2e+02 Score=24.70 Aligned_cols=37 Identities=0% Similarity=-0.125 Sum_probs=26.6
Q ss_pred CCcHHHHHHHHHHCCC--cEEEEeCCCCCCchHHHHHHHH
Q 018946 163 RPGVEDFVDDAYNEGI--PLIVLTAYGKSGDRIARSVVEK 200 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi--~vaIvTn~~~~~~~~~~~il~~ 200 (348)
.+...++|+.+|+.|. +.+++=|..+ +-..+..++..
T Consensus 102 ~~~~~~~l~~Ik~~g~~~kaGlalnP~T-p~~~i~~~l~~ 140 (228)
T PRK08091 102 THDLALTIEWLAKQKTTVLIGLCLCPET-PISLLEPYLDQ 140 (228)
T ss_pred cccHHHHHHHHHHCCCCceEEEEECCCC-CHHHHHHHHhh
Confidence 4568899999999999 9999988543 33444444443
No 311
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=32.18 E-value=91 Score=23.55 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=28.6
Q ss_pred HHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccch
Q 018946 167 EDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISK 208 (348)
Q Consensus 167 ~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~ 208 (348)
.++.+.++++|..+.+..- ...+..+++.+|+.+++.
T Consensus 60 ~~l~~~~~~~g~~v~i~~~-----~~~~~~~l~~~gl~~~~~ 96 (99)
T cd07043 60 LGAYKRARAAGGRLVLVNV-----SPAVRRVLELTGLDRLFP 96 (99)
T ss_pred HHHHHHHHHcCCeEEEEcC-----CHHHHHHHHHhCcceeee
Confidence 3577888888988776654 478899999999987665
No 312
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=32.06 E-value=54 Score=32.38 Aligned_cols=59 Identities=19% Similarity=0.324 Sum_probs=39.2
Q ss_pred hcCCCCccCCCCCchhhHHHHHHHHHHHH-cCC-CCCcEEEEecCH-hhHHHHH---------------HcCCcEEEECC
Q 018946 261 MLKLSVDIDTSSPESLDKIVAALRAGAEY-AEK-PVRNCFLIAGSQ-SGVAGAQ---------------RIGMPCVVMRS 322 (348)
Q Consensus 261 ~~KP~p~i~~~~~~~~~~~~~~~~~a~~~-lgv-~p~~~i~VGDs~-~Di~aA~---------------~aG~~~i~v~~ 322 (348)
.+||.+=-|. ..+.+ ++..++. .+. ++....||||.+ +|+.+|. .-||-.|+|.+
T Consensus 269 ~GKPt~ltY~----~A~~v---l~~~ak~~~~~~~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~T 341 (389)
T KOG1618|consen 269 LGKPTKLTYD----YAEDV---LRRQAKRRGGAAPIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVRT 341 (389)
T ss_pred cCCCceehHH----hHHHH---HHHHHHhhcccCCcceeeeecCCCcccccccccccccccccccccccCCCceEEEEee
Confidence 5688887742 12222 2233323 333 468999999987 6999996 77899999998
Q ss_pred CCCC
Q 018946 323 RCIT 326 (348)
Q Consensus 323 ~~~~ 326 (348)
+...
T Consensus 342 GV~~ 345 (389)
T KOG1618|consen 342 GVYN 345 (389)
T ss_pred eeec
Confidence 7544
No 313
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=31.62 E-value=42 Score=31.96 Aligned_cols=49 Identities=22% Similarity=0.159 Sum_probs=37.8
Q ss_pred cCCCCccCCCCCchhhHHHHHHHHHHHHcCCCC--CcEEEEecC-HhhHHHHHHcCCcEEEEC
Q 018946 262 LKLSVDIDTSSPESLDKIVAALRAGAEYAEKPV--RNCFLIAGS-QSGVAGAQRIGMPCVVMR 321 (348)
Q Consensus 262 ~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p--~~~i~VGDs-~~Di~aA~~aG~~~i~v~ 321 (348)
.||+|+= +..-|..-++.+|++| .++-||+|. .+--.+|...||. |+++
T Consensus 84 lKPsP~n----------iQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWE-VWld 135 (283)
T PRK09348 84 LKPSPDN----------IQELYLGSLEALGIDPLEHDIRFVEDNWESPTLGAWGLGWE-VWLD 135 (283)
T ss_pred EcCCCcc----------HHHHHHHHHHHhCCCccccceeEeecCCCCCcccccccceE-EEEC
Confidence 4887765 3334899999999997 579999997 4678889999987 4443
No 314
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=29.93 E-value=4.1e+02 Score=23.77 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=58.1
Q ss_pred HHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchheeecchhhhhhhcccccccccccCCchhHHHHHHHHH
Q 018946 167 EDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKIKIVGNEEVERSLYGQFVLGKGISSGVDEQLATEARKA 246 (348)
Q Consensus 167 ~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~~~~~~~v~g~~v~~~~~~~~~~~~~k~ 246 (348)
+..++.|++.+..-+|+|.. ..+-...+++|+.-....+++....+..+.
T Consensus 61 ~~~i~~L~~~~~~dGIISTk-----~~~i~~Ak~~gl~tIqRiFliDS~al~~~~------------------------- 110 (175)
T PF04309_consen 61 EAGIEYLKEYGKPDGIISTK-----SNLIKRAKKLGLLTIQRIFLIDSSALETGI------------------------- 110 (175)
T ss_dssp HHHHHHHHHTT--SEEEESS-----HHHHHHHHHTT-EEEEEEE-SSHHHHHHHH-------------------------
T ss_pred HHHHHHHHHcCCCcEEEeCC-----HHHHHHHHHcCCEEEEEeeeecHHHHHHHH-------------------------
Confidence 45777788877677888873 555666677888655444444443333321
Q ss_pred HHHHHHHHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEec---CHhhHHHHHHcCCcEEEECC
Q 018946 247 VSAQKQEIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAG---SQSGVAGAQRIGMPCVVMRS 322 (348)
Q Consensus 247 ~~~~~~~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGD---s~~Di~aA~~aG~~~i~v~~ 322 (348)
+..+..|||. -|-+|++ .-...+++.-...-.+.-|. +..|+..|.++|+..|-..+
T Consensus 111 ----------~~i~~~~PD~------vEilPg~---~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~ 170 (175)
T PF04309_consen 111 ----------KQIEQSKPDA------VEILPGV---MPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAVSTSN 170 (175)
T ss_dssp ----------HHHHHHT-SE------EEEESCC---HHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEEEE--
T ss_pred ----------HHHhhcCCCE------EEEchHH---HHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEEEcCC
Confidence 1112236662 1222221 33445665554455577776 45799999999998876653
No 315
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=29.91 E-value=46 Score=29.20 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=30.1
Q ss_pred CCCchhhHHHHHHHHHHHH---cCCCCCcEEEEecCHhh
Q 018946 271 SSPESLDKIVAALRAGAEY---AEKPVRNCFLIAGSQSG 306 (348)
Q Consensus 271 ~~~~~~~~~~~~~~~a~~~---lgv~p~~~i~VGDs~~D 306 (348)
+.|...+.+.++|+.+.+. ++.++++++++|||.-+
T Consensus 44 ~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg 82 (211)
T PF07859_consen 44 PFPAALEDVKAAYRWLLKNADKLGIDPERIVLIGDSAGG 82 (211)
T ss_dssp STTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHH
T ss_pred cccccccccccceeeeccccccccccccceEEeeccccc
Confidence 3477788888889988887 79999999999999644
No 316
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=29.83 E-value=2.7e+02 Score=21.73 Aligned_cols=34 Identities=21% Similarity=0.447 Sum_probs=26.1
Q ss_pred HHHHHHHCCCcEEEEe-CCCCCCchHHHHHHHHcCCc
Q 018946 169 FVDDAYNEGIPLIVLT-AYGKSGDRIARSVVEKLGSE 204 (348)
Q Consensus 169 lL~~Lk~~Gi~vaIvT-n~~~~~~~~~~~il~~lgl~ 204 (348)
.+..++..++++++=. ++ .....+..+++++|.+
T Consensus 13 ~~~~~~~~~~kivvD~~~G--~~~~~~~~ll~~lg~~ 47 (104)
T PF02879_consen 13 ILEAIKKSGLKIVVDCMNG--AGSDILPRLLERLGCD 47 (104)
T ss_dssp HHHHHHHTTCEEEEE-TTS--TTHHHHHHHHHHTTCE
T ss_pred chhhcccCCCEEEEECCCC--HHHHHHHHHHHHcCCc
Confidence 4677888899998844 44 3578999999999983
No 317
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=29.69 E-value=56 Score=31.03 Aligned_cols=49 Identities=20% Similarity=0.146 Sum_probs=37.8
Q ss_pred cCCCCccCCCCCchhhHHHHHHHHHHHHcCCCC--CcEEEEecC-HhhHHHHHHcCCcEEEEC
Q 018946 262 LKLSVDIDTSSPESLDKIVAALRAGAEYAEKPV--RNCFLIAGS-QSGVAGAQRIGMPCVVMR 321 (348)
Q Consensus 262 ~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p--~~~i~VGDs-~~Di~aA~~aG~~~i~v~ 321 (348)
.||+|+= +..-|..-++.+|++| .++-||+|. .+--.+|...||. |+++
T Consensus 80 iKPsP~n----------iQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGLGWE-VWld 131 (279)
T cd00733 80 IKPSPDN----------IQELYLESLEALGINPKEHDIRFVEDNWESPTLGAWGLGWE-VWLD 131 (279)
T ss_pred ECCCCcc----------HHHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccE-EEEC
Confidence 4887765 3333899999999987 689999997 4678889999987 4443
No 318
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=29.54 E-value=81 Score=34.25 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=29.4
Q ss_pred HHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcc
Q 018946 167 EDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 205 (348)
Q Consensus 167 ~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~ 205 (348)
.+.|++|+++|++++++|+. ....+..+.+.+|+..
T Consensus 439 ~eAL~~L~ekGI~~VIATGR---s~~~i~~l~~~Lgl~~ 474 (694)
T PRK14502 439 LDALRLLKDKELPLVFCSAK---TMGEQDLYRNELGIKD 474 (694)
T ss_pred HHHHHHHHHcCCeEEEEeCC---CHHHHHHHHHHcCCCC
Confidence 45789999999999999995 4566778888888754
No 319
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=29.52 E-value=1.1e+02 Score=23.83 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=29.5
Q ss_pred HHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccch
Q 018946 168 DFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISK 208 (348)
Q Consensus 168 elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~ 208 (348)
.+.++++++|.++.++.- ...+..+++..|+.+++.
T Consensus 62 ~~~~~~~~~g~~l~l~~~-----~~~v~~~l~~~gl~~~~~ 97 (106)
T TIGR02886 62 GRYKKIKNEGGEVIVCNV-----SPAVKRLFELSGLFKIIR 97 (106)
T ss_pred HHHHHHHHcCCEEEEEeC-----CHHHHHHHHHhCCceEEE
Confidence 467788889999887765 588899999999988774
No 320
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=29.27 E-value=1.4e+02 Score=28.18 Aligned_cols=56 Identities=14% Similarity=0.091 Sum_probs=45.4
Q ss_pred CCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEECCCCCC
Q 018946 263 KLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSRCIT 326 (348)
Q Consensus 263 KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~~~~~~ 326 (348)
||=.+| ..+|.|++-++.+.+. | .+++++--|+..=..+..+.|..+++....+.+
T Consensus 20 KPLadI-----~GkpmI~rV~e~a~~s-~--~~rvvVATDde~I~~av~~~G~~avmT~~~h~S 75 (247)
T COG1212 20 KPLADI-----GGKPMIVRVAERALKS-G--ADRVVVATDDERIAEAVQAFGGEAVMTSKDHQS 75 (247)
T ss_pred Cchhhh-----CCchHHHHHHHHHHHc-C--CCeEEEEcCCHHHHHHHHHhCCEEEecCCCCCC
Confidence 888888 5677888778877776 3 578999999999999999999999998765443
No 321
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=28.86 E-value=2.4e+02 Score=25.98 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=24.2
Q ss_pred cEEEEecCH--hhHHHHHHcCCcEEEECCCCCCc
Q 018946 296 NCFLIAGSQ--SGVAGAQRIGMPCVVMRSRCITT 327 (348)
Q Consensus 296 ~~i~VGDs~--~Di~aA~~aG~~~i~v~~~~~~~ 327 (348)
.-|.|+.+. ..+..+.++|...+++.+.....
T Consensus 174 ~~I~VdGGI~~~ti~~~~~aGad~iVvGsaI~~a 207 (228)
T PTZ00170 174 LNIQVDGGINLETIDIAADAGANVIVAGSSIFKA 207 (228)
T ss_pred CeEEECCCCCHHHHHHHHHcCCCEEEEchHHhCC
Confidence 346666654 58999999999999998876543
No 322
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=28.68 E-value=52 Score=31.49 Aligned_cols=49 Identities=16% Similarity=0.114 Sum_probs=37.7
Q ss_pred cCCCCccCCCCCchhhHHHHHHHHHHHHcCCCC--CcEEEEecC-HhhHHHHHHcCCcEEEEC
Q 018946 262 LKLSVDIDTSSPESLDKIVAALRAGAEYAEKPV--RNCFLIAGS-QSGVAGAQRIGMPCVVMR 321 (348)
Q Consensus 262 ~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p--~~~i~VGDs-~~Di~aA~~aG~~~i~v~ 321 (348)
.||+|+= +..-|..-++.+|++| .++-||+|. .+--.+|...||. ||++
T Consensus 81 lKPsP~n----------iQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWE-VWld 132 (293)
T TIGR00388 81 IKPSPDN----------IQELYLDSLRALGIDPTEHDIRFVEDNWENPTLGAWGLGWE-VWLD 132 (293)
T ss_pred ECCCCcc----------HHHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccE-EEEC
Confidence 4787765 3333889999999997 689999997 4678889999987 4444
No 323
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=28.61 E-value=18 Score=27.62 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=24.6
Q ss_pred chhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHH
Q 018946 274 ESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQR 312 (348)
Q Consensus 274 ~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~ 312 (348)
.+..++ ++.++|++.+++..+..|-+...+|.-.+.
T Consensus 26 apftaV---lkfaAeeF~vp~~tsaiItndG~GInP~QT 61 (76)
T PF03671_consen 26 APFTAV---LKFAAEEFKVPPATSAIITNDGVGINPQQT 61 (76)
T ss_dssp SBHHHH---HHHHHHHTTS-SSSEEEEESSS-EE-TTSB
T ss_pred CchHHH---HHHHHHHcCCCCceEEEEecCCcccccchh
Confidence 345555 799999999999999998876665544433
No 324
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=27.97 E-value=4.8e+02 Score=24.69 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=21.6
Q ss_pred EEEecCHh---hHHHHHHcCCcEEEECCCC
Q 018946 298 FLIAGSQS---GVAGAQRIGMPCVVMRSRC 324 (348)
Q Consensus 298 i~VGDs~~---Di~aA~~aG~~~i~v~~~~ 324 (348)
++||=+.+ ++.....+|...|+|.+..
T Consensus 205 i~vGFGI~~~e~~~~~~~~GADGvVVGSal 234 (263)
T CHL00200 205 IILGFGISTSEQIKQIKGWNINGIVIGSAC 234 (263)
T ss_pred EEEECCcCCHHHHHHHHhcCCCEEEECHHH
Confidence 77777654 7888888999999998865
No 325
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=27.90 E-value=3.5e+02 Score=25.55 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=29.3
Q ss_pred HHHHHHHcCCCCCcEEEEec--CHhhHHHHHHc-CCcEEEECC
Q 018946 283 LRAGAEYAEKPVRNCFLIAG--SQSGVAGAQRI-GMPCVVMRS 322 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGD--s~~Di~aA~~a-G~~~i~v~~ 322 (348)
+...+++..++ +++=|. |.+||+.+.+. |+..+.+..
T Consensus 183 ~~~l~~~~~ip---viaSGGv~s~~Di~~l~~~~G~~GvIvG~ 222 (241)
T COG0106 183 VKELAEAVDIP---VIASGGVSSLDDIKALKELSGVEGVIVGR 222 (241)
T ss_pred HHHHHHHhCcC---EEEecCcCCHHHHHHHHhcCCCcEEEEeh
Confidence 77778888554 566666 57899999999 898888875
No 326
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=27.55 E-value=6e+02 Score=25.39 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=17.2
Q ss_pred HcCCCCCcEEEEecC--HhhHHHHHHcCCcEEEEC
Q 018946 289 YAEKPVRNCFLIAGS--QSGVAGAQRIGMPCVVMR 321 (348)
Q Consensus 289 ~lgv~p~~~i~VGDs--~~Di~aA~~aG~~~i~v~ 321 (348)
..|++|++++|-|-. ..+|+.|.+.|+.++.+.
T Consensus 75 ~~G~~~~~Iif~gp~K~~~~l~~a~~~Gv~~i~vD 109 (394)
T cd06831 75 ELGVSPENIIYTNPCKQASQIKYAAKVGVNIMTCD 109 (394)
T ss_pred hcCCCcCCEEEeCCCCCHHHHHHHHHCCCCEEEEC
Confidence 345555555555553 345555555555544443
No 327
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=27.21 E-value=1e+02 Score=28.23 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=22.2
Q ss_pred CCCc-HHHHHHHHHHCCCcEEEEeCCC
Q 018946 162 LRPG-VEDFVDDAYNEGIPLIVLTAYG 187 (348)
Q Consensus 162 l~pG-v~elL~~Lk~~Gi~vaIvTn~~ 187 (348)
++++ +.++++.+++.|+++++.|||.
T Consensus 83 l~~~~~~~l~~~~k~~g~~i~l~TNG~ 109 (246)
T PRK11145 83 LQAEFVRDWFRACKKEGIHTCLDTNGF 109 (246)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 3666 4689999999999999999984
No 328
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=26.55 E-value=2e+02 Score=28.37 Aligned_cols=64 Identities=11% Similarity=0.047 Sum_probs=40.3
Q ss_pred HHHHHHHcCCCC------CcEEEEecCHhhHHHHH---HcCCcEEEECCCCCCcccccc------c--ccchhHHHHhhc
Q 018946 283 LRAGAEYAEKPV------RNCFLIAGSQSGVAGAQ---RIGMPCVVMRSRCITTLPVSK------T--QRLADMLCRILK 345 (348)
Q Consensus 283 ~~~a~~~lgv~p------~~~i~VGDs~~Di~aA~---~aG~~~i~v~~~~~~~~~l~~------~--~~~~d~l~~~l~ 345 (348)
|+..++..|++. =--+|+||..--.++|. ..|+.++++..+..+.-.-+. + +.-+|.+++.+.
T Consensus 328 fr~~me~aGftIsg~~hPI~pv~lGda~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~ 407 (417)
T KOG1359|consen 328 FREFMEAAGFTISGASHPICPVMLGDARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFS 407 (417)
T ss_pred HHHHHHhcCceecCCCCCccceecccHHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHH
Confidence 777777777653 34699999876555554 569999998876554332211 1 112677777665
Q ss_pred c
Q 018946 346 S 346 (348)
Q Consensus 346 ~ 346 (348)
+
T Consensus 408 ~ 408 (417)
T KOG1359|consen 408 E 408 (417)
T ss_pred H
Confidence 4
No 329
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=26.41 E-value=5.2e+02 Score=24.10 Aligned_cols=37 Identities=3% Similarity=-0.172 Sum_probs=20.9
Q ss_pred HHHHHcCCC-CCcEEEEecCHhhHHHHHHcCCcEEEEC
Q 018946 285 AGAEYAEKP-VRNCFLIAGSQSGVAGAQRIGMPCVVMR 321 (348)
Q Consensus 285 ~a~~~lgv~-p~~~i~VGDs~~Di~aA~~aG~~~i~v~ 321 (348)
.++...|+. |+++-++|....++.....-++.+|..+
T Consensus 255 ~al~~~g~~vP~disv~gfd~~~~~~~~~p~lttv~~~ 292 (328)
T PRK11303 255 DVLLERPGELPSDLAIATFGDNELLDFLPCPVNAVAQQ 292 (328)
T ss_pred HHHHHcCCCCCCceEEEEeCChHHHhccCCCceEEecC
Confidence 444556664 7787777765444444444456665443
No 330
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=26.35 E-value=3.3e+02 Score=25.59 Aligned_cols=39 Identities=21% Similarity=0.204 Sum_probs=27.8
Q ss_pred HHHHHHHcCCCCCcEEEEecCH---hhHHHHHHcCCcEEEECCCCC
Q 018946 283 LRAGAEYAEKPVRNCFLIAGSQ---SGVAGAQRIGMPCVVMRSRCI 325 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGDs~---~Di~aA~~aG~~~i~v~~~~~ 325 (348)
++.+.+..+. -++||-+. .++..+..+|...|+|.+...
T Consensus 190 i~~lr~~~~~----pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv 231 (256)
T TIGR00262 190 VKRLKAYSAK----PVLVGFGISKPEQVKQAIDAGADGVIVGSAIV 231 (256)
T ss_pred HHHHHhhcCC----CEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 3444444443 37888865 489999999999999998654
No 331
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=26.01 E-value=38 Score=37.32 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=13.1
Q ss_pred ceEEEEecCCccccc
Q 018946 84 DLAVLLEVDGVLVDA 98 (348)
Q Consensus 84 ~kaviFDvDGTL~d~ 98 (348)
.++++||+||||++.
T Consensus 507 ~rll~LDyDGTL~~~ 521 (797)
T PLN03063 507 NRLLILGFYGTLTEP 521 (797)
T ss_pred CeEEEEecCccccCC
Confidence 469999999999964
No 332
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=25.88 E-value=87 Score=30.22 Aligned_cols=39 Identities=15% Similarity=0.278 Sum_probs=29.0
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCC
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGS 203 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl 203 (348)
-||+..+-..|+..|.++.|+|.. .....++..++.+++
T Consensus 62 P~GA~aLa~aL~~lG~~~~ivtd~--~~~~~~~~~~~~~~~ 100 (291)
T PF14336_consen 62 PPGAAALARALQALGKEVVIVTDE--RCAPVVKAAVRAAGL 100 (291)
T ss_pred hHHHHHHHHHHHHcCCeEEEEECH--HHHHHHHHHHHHHhh
Confidence 479999999999999999999984 123445555555554
No 333
>COG2237 Predicted membrane protein [Function unknown]
Probab=25.66 E-value=2e+02 Score=28.74 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=15.9
Q ss_pred cHHHHHHHHHHCC--CcEEEEeCC
Q 018946 165 GVEDFVDDAYNEG--IPLIVLTAY 186 (348)
Q Consensus 165 Gv~elL~~Lk~~G--i~vaIvTn~ 186 (348)
++.++-++||++| ..++++|+.
T Consensus 52 ~alkiydeLk~~geDveIA~vsG~ 75 (364)
T COG2237 52 AALKIYDELKAKGEDVEIAVVSGD 75 (364)
T ss_pred HHHHHHHHHhccCCceEEEEEecC
Confidence 4456777888776 778888873
No 334
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=25.59 E-value=82 Score=28.14 Aligned_cols=22 Identities=5% Similarity=-0.053 Sum_probs=11.4
Q ss_pred HHHHcCCCCCcEEEEecCHhhH
Q 018946 286 GAEYAEKPVRNCFLIAGSQSGV 307 (348)
Q Consensus 286 a~~~lgv~p~~~i~VGDs~~Di 307 (348)
-..++|++++++...||-.-|.
T Consensus 163 r~~~lG~~~~~v~v~GnlKfd~ 184 (186)
T PF04413_consen 163 RFRKLGAPPERVHVTGNLKFDQ 184 (186)
T ss_dssp HHHTTT-S--SEEE---GGG--
T ss_pred HHHHcCCCcceEEEeCcchhcc
Confidence 3478999999999999987765
No 335
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=25.51 E-value=40 Score=37.89 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=13.6
Q ss_pred ceEEEEecCCcccccc
Q 018946 84 DLAVLLEVDGVLVDAY 99 (348)
Q Consensus 84 ~kaviFDvDGTL~d~~ 99 (348)
.++++||+||||++..
T Consensus 591 ~RLlfLDyDGTLap~~ 606 (934)
T PLN03064 591 NRLLILGFNATLTEPV 606 (934)
T ss_pred ceEEEEecCceeccCC
Confidence 4799999999999753
No 336
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=25.30 E-value=1.7e+02 Score=27.48 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=21.1
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHc
Q 018946 166 VEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKL 201 (348)
Q Consensus 166 v~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~l 201 (348)
=..+|+.+.+.|.+|.+-|+.. .-..++..++.+
T Consensus 102 n~~lL~~~A~tgkPvIlSTG~s--tl~EI~~Av~~~ 135 (241)
T PF03102_consen 102 NLPLLEYIAKTGKPVILSTGMS--TLEEIERAVEVL 135 (241)
T ss_dssp -HHHHHHHHTT-S-EEEE-TT----HHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCcEEEECCCC--CHHHHHHHHHHH
Confidence 3469999999999998888863 355556666555
No 337
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=25.29 E-value=1.1e+02 Score=25.92 Aligned_cols=44 Identities=11% Similarity=0.010 Sum_probs=28.8
Q ss_pred CCcHHHHHHHHHHCCC-cEEEEeCCCCCCchHHHHHHHHcCCcccch
Q 018946 163 RPGVEDFVDDAYNEGI-PLIVLTAYGKSGDRIARSVVEKLGSERISK 208 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi-~vaIvTn~~~~~~~~~~~il~~lgl~~~f~ 208 (348)
.+.+.++++.|+++|. .+.|+-+|. ....-...++.+|++.+|.
T Consensus 67 ~~~~~~~~~~L~~~g~~~i~vivGG~--~~~~~~~~l~~~Gvd~~~~ 111 (132)
T TIGR00640 67 LTLVPALRKELDKLGRPDILVVVGGV--IPPQDFDELKEMGVAEIFG 111 (132)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCC--CChHhHHHHHHCCCCEEEC
Confidence 4467788899988876 344444542 2333455688899988775
No 338
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=24.96 E-value=1.4e+02 Score=23.27 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=29.2
Q ss_pred HHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccchh
Q 018946 168 DFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERISKI 209 (348)
Q Consensus 168 elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~ 209 (348)
++.+.++++|..+.++.- ...+..+++..|+.+.+..
T Consensus 66 ~~~~~~~~~~~~~~l~~~-----~~~~~~~l~~~~l~~~~~i 102 (108)
T TIGR00377 66 GRYKQVRRVGGQLVLVSV-----SPRVARLLDITGLLRIIPI 102 (108)
T ss_pred HHHHHHHhcCCEEEEEeC-----CHHHHHHHHHhChhheecc
Confidence 466777888988887765 4788899999999887664
No 339
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=24.58 E-value=1e+02 Score=29.18 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=22.8
Q ss_pred CCCcH-HHHHHHHHHCCCcEEEEeCCC
Q 018946 162 LRPGV-EDFVDDAYNEGIPLIVLTAYG 187 (348)
Q Consensus 162 l~pGv-~elL~~Lk~~Gi~vaIvTn~~ 187 (348)
+.|+. .++++.+++.|+.+.+.|||.
T Consensus 138 l~~~~l~~l~~~~k~~g~~~~i~TnG~ 164 (295)
T TIGR02494 138 LQPEFALALLQACHERGIHTAVETSGF 164 (295)
T ss_pred chHHHHHHHHHHHHHcCCcEeeeCCCC
Confidence 46775 699999999999999999985
No 340
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=24.31 E-value=50 Score=32.41 Aligned_cols=24 Identities=17% Similarity=-0.006 Sum_probs=21.3
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCC
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAY 186 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~ 186 (348)
-|-+..+++.|+++|++++|+|.|
T Consensus 51 TP~v~~L~~~L~~~G~~~~IlSRG 74 (326)
T PF02606_consen 51 TPLVIWLARLLQARGYRPAILSRG 74 (326)
T ss_pred hHHHHHHHHHHHhcCCceEEEcCC
Confidence 366889999999999999999975
No 341
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=24.01 E-value=7.7e+02 Score=25.83 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=24.7
Q ss_pred HcCC-CCCcEEEEecC-HhhHHHHHH----cCCcEEEECCC
Q 018946 289 YAEK-PVRNCFLIAGS-QSGVAGAQR----IGMPCVVMRSR 323 (348)
Q Consensus 289 ~lgv-~p~~~i~VGDs-~~Di~aA~~----aG~~~i~v~~~ 323 (348)
..+. ..+-+|.||.+ ..|+..+.+ .|++.|.|++.
T Consensus 264 ~~~~~r~D~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPTT 304 (542)
T PRK14021 264 NEGFTRSDAIVGLGGGAATDLAGFVAATWMRGIRYVNCPTS 304 (542)
T ss_pred hcCCCCCcEEEEEcChHHHHHHHHHHHHHHcCCCEEEeCCh
Confidence 3454 34556779996 568776665 59999999983
No 342
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=23.99 E-value=3.2e+02 Score=27.51 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=22.3
Q ss_pred CcHHHHHHHH-HHCC-CcEEEEeCCCCCCchHHHHHHHHcCCc
Q 018946 164 PGVEDFVDDA-YNEG-IPLIVLTAYGKSGDRIARSVVEKLGSE 204 (348)
Q Consensus 164 pGv~elL~~L-k~~G-i~vaIvTn~~~~~~~~~~~il~~lgl~ 204 (348)
.|..+.+... ++.| .++.|+|....-....+..+++.|+..
T Consensus 14 ~g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~ 56 (377)
T COG1454 14 RGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAA 56 (377)
T ss_pred CChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhc
Confidence 4555544444 4446 678888874321234566666665443
No 343
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=23.85 E-value=1.7e+02 Score=26.53 Aligned_cols=38 Identities=16% Similarity=0.069 Sum_probs=25.4
Q ss_pred HHHHHHHcCCCCCcEEEEecCH--hhHHHHHHcCCcEEEECC
Q 018946 283 LRAGAEYAEKPVRNCFLIAGSQ--SGVAGAQRIGMPCVVMRS 322 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGDs~--~Di~aA~~aG~~~i~v~~ 322 (348)
++......| ..--|.|+.+. ..+....++|+..+++.+
T Consensus 156 l~~~~~~~~--~~~~I~vDGGI~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 156 LRKLIPENG--LDFEIEVDGGINEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp HHHHHHHHT--CGSEEEEESSESTTTHHHHHHHT--EEEESH
T ss_pred HHHHHHhcC--CceEEEEECCCCHHHHHHHHHcCCCEEEECH
Confidence 555555555 34457787765 479999999999888865
No 344
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=23.69 E-value=2.7e+02 Score=26.31 Aligned_cols=68 Identities=12% Similarity=0.047 Sum_probs=33.7
Q ss_pred HHHHHHHhhcCCCCccCCCCCchhhHHHHHHHHHHHHcCCCCCcEEEEecC-HhhHHHHHHcCCcEEEEC
Q 018946 253 EIAEEVASMLKLSVDIDTSSPESLDKIVAALRAGAEYAEKPVRNCFLIAGS-QSGVAGAQRIGMPCVVMR 321 (348)
Q Consensus 253 ~i~~~~~~~~KP~p~i~~~~~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs-~~Di~aA~~aG~~~i~v~ 321 (348)
++.+.+.++.+|..+++-..-.+...+ .....++++..+.-.+++++||. ..-|..|....-.-|.|-
T Consensus 5 ~~~~i~~~RP~~~~~~DQ~~~T~eT~~-~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~Vv 73 (243)
T PF01861_consen 5 KFSEIVKNRPEPDVELDQGYATPETTL-RRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVV 73 (243)
T ss_dssp HHHHHHTT-----GGGT---B-HHHHH-HHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE
T ss_pred HHHHHHHcCCCCccccccccccHHHHH-HHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEE
Confidence 344555667788888865444443333 33445566666888999999997 467887765544455554
No 345
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=23.60 E-value=4.8e+02 Score=22.51 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=30.8
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcc-cchh
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER-ISKI 209 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~-~f~~ 209 (348)
.|-+.-+...|+++|+++.|..| ..+..+++-.+.+. |.+.
T Consensus 13 ~p~alYl~~~Lk~~G~~v~Va~n------pAA~kLl~vaDPe~~Y~~~ 54 (139)
T PF09001_consen 13 TPSALYLSYKLKKKGFEVVVAGN------PAALKLLEVADPEKHYLKE 54 (139)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEE-------HHHHHHHHHHSTT-SS-SE
T ss_pred hHHHHHHHHHHHhcCCeEEEecC------HHHHhHhhhcCCccchhcc
Confidence 45677889999999999999999 67788888777764 4443
No 346
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=23.39 E-value=1.4e+02 Score=30.24 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=30.3
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEE-eCCCCCCchHHHHHHHHcCCcc
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVL-TAYGKSGDRIARSVVEKLGSER 205 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIv-Tn~~~~~~~~~~~il~~lgl~~ 205 (348)
-++|.+.++|+.+++.|++++|. ||+..-.+.....-+..+|++.
T Consensus 86 l~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld~ 131 (404)
T TIGR03278 86 SCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVRE 131 (404)
T ss_pred ccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCCE
Confidence 35799999999999999999995 9963111333333344455553
No 347
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=23.17 E-value=2.4e+02 Score=26.03 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=18.6
Q ss_pred CCCCcHHHHHHHHHHCCCcEEEE
Q 018946 161 PLRPGVEDFVDDAYNEGIPLIVL 183 (348)
Q Consensus 161 ~l~pGv~elL~~Lk~~Gi~vaIv 183 (348)
.+.++..++.+.|++.|..+..+
T Consensus 10 Rp~~~~~~l~~~l~~~G~~~~~~ 32 (255)
T PRK05752 10 RPAEECAALAASLAEAGIFSSSL 32 (255)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEc
Confidence 45677888999999999888775
No 348
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=22.73 E-value=54 Score=29.49 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.4
Q ss_pred ceEEEEecCCccccccc
Q 018946 84 DLAVLLEVDGVLVDAYR 100 (348)
Q Consensus 84 ~kaviFDvDGTL~d~~~ 100 (348)
.++++||-||||.....
T Consensus 5 ~k~lflDRDGtin~d~~ 21 (181)
T COG0241 5 QKALFLDRDGTINIDKG 21 (181)
T ss_pred CcEEEEcCCCceecCCC
Confidence 67999999999987554
No 349
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=22.66 E-value=1.3e+02 Score=24.70 Aligned_cols=46 Identities=9% Similarity=0.001 Sum_probs=29.0
Q ss_pred CCCcHHHHHHHHHHCCC-cEEEEeCCCCCCchHHHHHHHHcCCcccchh
Q 018946 162 LRPGVEDFVDDAYNEGI-PLIVLTAYGKSGDRIARSVVEKLGSERISKI 209 (348)
Q Consensus 162 l~pGv~elL~~Lk~~Gi-~vaIvTn~~~~~~~~~~~il~~lgl~~~f~~ 209 (348)
..+.+.++++.|+++|. .+.++-++. ........+..+|++.+|..
T Consensus 63 ~~~~~~~~~~~L~~~~~~~i~i~~GG~--~~~~~~~~~~~~G~d~~~~~ 109 (122)
T cd02071 63 HMTLFPEVIELLRELGAGDILVVGGGI--IPPEDYELLKEMGVAEIFGP 109 (122)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEECC--CCHHHHHHHHHCCCCEEECC
Confidence 34567889999999866 444444431 23333455668898887763
No 350
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=21.87 E-value=1.5e+02 Score=28.12 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=22.4
Q ss_pred CCCcHHHHHHHHHHCCC-cEEEEeCCC
Q 018946 162 LRPGVEDFVDDAYNEGI-PLIVLTAYG 187 (348)
Q Consensus 162 l~pGv~elL~~Lk~~Gi-~vaIvTn~~ 187 (348)
+++++.++++.+++.|+ .+.+.||+.
T Consensus 69 l~~~l~~iv~~l~~~g~~~v~i~TNG~ 95 (302)
T TIGR02668 69 LRKDLIEIIRRIKDYGIKDVSMTTNGI 95 (302)
T ss_pred cccCHHHHHHHHHhCCCceEEEEcCch
Confidence 46788899999999998 899999973
No 351
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.82 E-value=88 Score=24.22 Aligned_cols=43 Identities=21% Similarity=0.290 Sum_probs=33.5
Q ss_pred CchhhHHHHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEE
Q 018946 273 PESLDKIVAALRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCV 318 (348)
Q Consensus 273 ~~~~~~~~~~~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i 318 (348)
+.+..++ ++.+++.+.+++.....|.+..-+|..|+.+|--..
T Consensus 36 stpftav---lkfaaeefkvpaatsaiitndgiginpaq~agnvfl 78 (94)
T KOG3483|consen 36 STPFTAV---LKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFL 78 (94)
T ss_pred CCchHHH---HHHHHHHccCCccceeEEecCccccCccccccceee
Confidence 3445455 899999999999888888887788888888886433
No 352
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=21.79 E-value=3.9e+02 Score=20.84 Aligned_cols=26 Identities=8% Similarity=0.019 Sum_probs=19.6
Q ss_pred CcEEEEecCHhhHHHHHHcCCcEEEE
Q 018946 295 RNCFLIAGSQSGVAGAQRIGMPCVVM 320 (348)
Q Consensus 295 ~~~i~VGDs~~Di~aA~~aG~~~i~v 320 (348)
..++..-+........+.+|+..|+.
T Consensus 90 ~~ii~~~~~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 90 IRIIARVNDPENAELLRQAGADHVIS 115 (116)
T ss_dssp SEEEEEESSHHHHHHHHHTT-SEEEE
T ss_pred CeEEEEECCHHHHHHHHHCCcCEEEC
Confidence 56777778888888888889887764
No 353
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=21.50 E-value=2.5e+02 Score=27.88 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=21.9
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCC
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAY 186 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~ 186 (348)
-|-|..+.+.|+++|++++++|-+
T Consensus 63 TP~vi~la~~l~~rG~~~gvvSRG 86 (336)
T COG1663 63 TPVVIWLAEALQARGVRVGVVSRG 86 (336)
T ss_pred CHHHHHHHHHHHhcCCeeEEEecC
Confidence 367999999999999999999976
No 354
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=21.39 E-value=9.2e+02 Score=25.11 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=24.5
Q ss_pred HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEECCC
Q 018946 283 LRAGAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRSR 323 (348)
Q Consensus 283 ~~~a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~~~ 323 (348)
++..+++.+.+ +++|++ ++-..|++.|++++.+..+
T Consensus 366 i~~~I~~~~pd----liiGs~-~er~ia~~lgiP~~~is~P 401 (513)
T CHL00076 366 VGDMIARVEPS----AIFGTQ-MERHIGKRLDIPCGVISAP 401 (513)
T ss_pred HHHHHHhcCCC----EEEECc-hhhHHHHHhCCCEEEeecc
Confidence 34455555544 888988 4444589999999887644
No 355
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.39 E-value=1.2e+02 Score=24.43 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=21.4
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCC
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAY 186 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~ 186 (348)
.+.+.+.++.++++|.++..+|+.
T Consensus 59 t~e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 59 TADTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred CHHHHHHHHHHHHcCCeEEEEECC
Confidence 457889999999999999999994
No 356
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=21.08 E-value=91 Score=25.17 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=21.8
Q ss_pred CCcHHHHHHHHHHCCCcEEEEeCC
Q 018946 163 RPGVEDFVDDAYNEGIPLIVLTAY 186 (348)
Q Consensus 163 ~pGv~elL~~Lk~~Gi~vaIvTn~ 186 (348)
.+.+.++++.++++|.++..+|+.
T Consensus 60 t~~~~~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 60 TDELLNLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred CHHHHHHHHHHHHCCCeEEEEeCC
Confidence 467999999999999999999984
No 357
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=21.07 E-value=1.3e+02 Score=27.83 Aligned_cols=104 Identities=16% Similarity=0.231 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHhcccCcHHHHHHHHhhH----HHHHHHHHhcCCCCCCCcHHHHHHHHHHCCCcE
Q 018946 105 QAFNVAFQKLGLDCANWTAPIYTDLLRKSAGDEDRMLVLFFNR----KNALDEFLASKDAPLRPGVEDFVDDAYNEGIPL 180 (348)
Q Consensus 105 ~a~~~~~~~~gl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~pGv~elL~~Lk~~Gi~v 180 (348)
....+.+...|+.+..++...|++........ ..++.. .....+.++. .-+.++++.|.+.|-.|
T Consensus 30 ~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~-----~~ff~p~n~~~~~~R~~~a~------~~l~dl~~~l~~~~G~V 98 (222)
T PF01591_consen 30 RKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQD-----AEFFDPDNEEAKKLREQIAK------EALEDLIEWLQEEGGQV 98 (222)
T ss_dssp HHHHHHHHHTT--EEEEEHHHHHHHHHSS-S------GGGGSTT-HHHHHHHHHHHH------HHHHHHHHHHHTS--SE
T ss_pred HHHHHHHhhcCCCcceeecccceecccccccc-----cccCCCCChHHHHHHHHHHH------HHHHHHHHHHhcCCCeE
Confidence 34556666778776555555565554433111 011111 1112222211 23457889999788899
Q ss_pred EEEe--CCCCCCchHHHHHHHHcCCcccchheeecchhhhh
Q 018946 181 IVLT--AYGKSGDRIARSVVEKLGSERISKIKIVGNEEVER 219 (348)
Q Consensus 181 aIvT--n~~~~~~~~~~~il~~lgl~~~f~~~i~~~~e~~~ 219 (348)
||+- |+++.....+...+...|+.-+|=..++..+++..
T Consensus 99 AI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~ 139 (222)
T PF01591_consen 99 AIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIE 139 (222)
T ss_dssp EEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHH
Confidence 9965 55443344555556667766666555555555544
No 358
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=20.94 E-value=1.4e+02 Score=28.16 Aligned_cols=27 Identities=15% Similarity=-0.036 Sum_probs=23.7
Q ss_pred CCCcHHHHHHHHHHCCCcEEEEeCCCC
Q 018946 162 LRPGVEDFVDDAYNEGIPLIVLTAYGK 188 (348)
Q Consensus 162 l~pGv~elL~~Lk~~Gi~vaIvTn~~~ 188 (348)
..+.+.++++.+|++|+++++.||+--
T Consensus 97 q~e~~~~~~~~ake~Gl~~~l~TnG~~ 123 (260)
T COG1180 97 QAEFALDLLRAAKERGLHVALDTNGFL 123 (260)
T ss_pred hHHHHHHHHHHHHHCCCcEEEEcCCCC
Confidence 367788999999999999999999853
No 359
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=20.89 E-value=5.6e+02 Score=23.96 Aligned_cols=41 Identities=24% Similarity=0.208 Sum_probs=31.6
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccc
Q 018946 166 VEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERIS 207 (348)
Q Consensus 166 v~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f 207 (348)
+...+..+-.-|-++.|+|...+ ....++..++.+|+.+..
T Consensus 98 ~eAsv~~A~~vgrrfsViTtt~r-s~~il~~lv~~~g~s~~~ 138 (230)
T COG4126 98 CEASVLAALFVGRRFSVITTTER-SRPILEELVRSYGLSRHC 138 (230)
T ss_pred hHHHHHHHHHhcceEEEEecCcc-cHHHHHHHHHhcCccccc
Confidence 44455666666899999998775 678899999999997543
No 360
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=20.66 E-value=6.9e+02 Score=24.57 Aligned_cols=33 Identities=12% Similarity=0.224 Sum_probs=23.5
Q ss_pred CCCCcEEEEecC-HhhHHHHHHc--------------------CCcEEEECCCC
Q 018946 292 KPVRNCFLIAGS-QSGVAGAQRI--------------------GMPCVVMRSRC 324 (348)
Q Consensus 292 v~p~~~i~VGDs-~~Di~aA~~a--------------------G~~~i~v~~~~ 324 (348)
..++-+|.||.+ .-|+.-+..+ +++.|.|++-.
T Consensus 82 ~~~D~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTa 135 (376)
T cd08193 82 AGADGVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTA 135 (376)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCC
Confidence 356789999996 5687655432 67889888754
No 361
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=20.57 E-value=1.3e+02 Score=23.81 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=29.9
Q ss_pred HHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcccc
Q 018946 167 EDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSERIS 207 (348)
Q Consensus 167 ~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~~f 207 (348)
.++.+.++.+|+++.++.- ...+...++.+|+.+.+
T Consensus 70 ~~~~~~~~~~g~~~~l~~~-----~~~v~~~l~~~~~~~~~ 105 (117)
T PF01740_consen 70 VDIIKELRRRGVQLVLVGL-----NPDVRRILERSGLIDFI 105 (117)
T ss_dssp HHHHHHHHHTTCEEEEESH-----HHHHHHHHHHTTGHHHS
T ss_pred HHHHHHHHHCCCEEEEEEC-----CHHHHHHHHHcCCChhc
Confidence 4678899999999998865 57888889999998765
No 362
>PRK10537 voltage-gated potassium channel; Provisional
Probab=20.54 E-value=8.8e+02 Score=24.38 Aligned_cols=36 Identities=6% Similarity=0.015 Sum_probs=25.2
Q ss_pred HHHHcCCCCCcEEEEecCHhhHHHHHHcCCcEEEECC
Q 018946 286 GAEYAEKPVRNCFLIAGSQSGVAGAQRIGMPCVVMRS 322 (348)
Q Consensus 286 a~~~lgv~p~~~i~VGDs~~Di~aA~~aG~~~i~v~~ 322 (348)
.++.++ +.-+++..-+...+.+..+++|...|..+.
T Consensus 322 ~ar~l~-p~~kIIa~v~~~~~~~~L~~~GaD~VIsp~ 357 (393)
T PRK10537 322 AAKEMS-SDVKTVAAVNDSKNLEKIKRVHPDMIFSPQ 357 (393)
T ss_pred HHHHhC-CCCcEEEEECCHHHHHHHHhcCCCEEECHH
Confidence 355555 224677777777788888899998877664
No 363
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.09 E-value=1.7e+02 Score=22.36 Aligned_cols=20 Identities=15% Similarity=0.433 Sum_probs=18.2
Q ss_pred HHHHHHHHHHCCCcEEEEeC
Q 018946 166 VEDFVDDAYNEGIPLIVLTA 185 (348)
Q Consensus 166 v~elL~~Lk~~Gi~vaIvTn 185 (348)
..++++.|+++|+++.+.|.
T Consensus 55 ~~~i~~~L~~~G~~~~~~~~ 74 (85)
T cd04906 55 LAELLEDLKSAGYEVVDLSD 74 (85)
T ss_pred HHHHHHHHHHCCCCeEECCC
Confidence 88899999999999988887
No 364
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=20.06 E-value=5.4e+02 Score=25.80 Aligned_cols=35 Identities=11% Similarity=0.138 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHCCCcEEEEeCCCCCCchHHHHHHHHcCCcc
Q 018946 165 GVEDFVDDAYNEGIPLIVLTAYGKSGDRIARSVVEKLGSER 205 (348)
Q Consensus 165 Gv~elL~~Lk~~Gi~vaIvTn~~~~~~~~~~~il~~lgl~~ 205 (348)
...+.+..|+++|+.|.|+|++ .+-.-+..||+..
T Consensus 32 ~l~~~ia~L~~~G~eVilVSSG------AiaaG~~~Lg~~~ 66 (369)
T COG0263 32 ELVRQVAALHKAGHEVVLVSSG------AIAAGRTRLGLPK 66 (369)
T ss_pred HHHHHHHHHHhCCCEEEEEccc------hhhhChhhcCCCC
Confidence 3446788899999999999995 3445666777754
Done!