Query 018949
Match_columns 348
No_of_seqs 387 out of 3455
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 05:25:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018949.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018949hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1159 Era GTPase [General fu 100.0 1.5E-41 3.2E-46 303.0 26.6 229 112-343 3-233 (298)
2 TIGR00436 era GTP-binding prot 100.0 5.7E-37 1.2E-41 281.2 28.0 221 116-340 1-222 (270)
3 PRK15494 era GTPase Era; Provi 100.0 1.6E-36 3.5E-41 285.9 27.7 225 113-341 50-275 (339)
4 PRK00089 era GTPase Era; Revie 100.0 3.6E-35 7.9E-40 272.4 29.3 227 113-343 3-230 (292)
5 KOG1423 Ras-like GTPase ERA [C 100.0 5.4E-33 1.2E-37 246.6 22.1 227 113-340 70-329 (379)
6 PRK12298 obgE GTPase CgtA; Rev 100.0 2.6E-28 5.6E-33 233.1 18.2 234 30-312 120-362 (390)
7 COG0486 ThdF Predicted GTPase 99.9 2E-27 4.3E-32 224.2 13.0 211 60-285 166-378 (454)
8 COG1160 Predicted GTPases [Gen 99.9 1.2E-25 2.7E-30 211.5 17.7 162 116-283 4-165 (444)
9 PF02421 FeoB_N: Ferrous iron 99.9 4.1E-25 8.9E-30 184.0 11.2 155 117-278 2-156 (156)
10 PRK12299 obgE GTPase CgtA; Rev 99.9 3.7E-24 8.1E-29 200.8 15.3 205 30-284 119-329 (335)
11 COG1160 Predicted GTPases [Gen 99.9 3.5E-23 7.6E-28 195.0 19.6 168 114-283 177-351 (444)
12 PRK12296 obgE GTPase CgtA; Rev 99.9 1.2E-23 2.6E-28 204.5 15.4 204 30-284 120-341 (500)
13 cd04163 Era Era subfamily. Er 99.9 1.4E-22 3.1E-27 170.5 19.8 165 115-282 3-168 (168)
14 cd01894 EngA1 EngA1 subfamily. 99.9 1.2E-22 2.5E-27 170.1 17.5 157 119-282 1-157 (157)
15 cd01897 NOG NOG1 is a nucleola 99.9 1.3E-22 2.7E-27 172.4 17.4 164 116-282 1-167 (168)
16 PRK05291 trmE tRNA modificatio 99.9 4.2E-23 9.2E-28 201.5 16.1 157 115-284 215-371 (449)
17 TIGR02729 Obg_CgtA Obg family 99.9 3.6E-23 7.8E-28 194.0 14.3 203 30-282 118-328 (329)
18 PRK12297 obgE GTPase CgtA; Rev 99.9 5.5E-23 1.2E-27 197.6 15.3 205 30-287 119-331 (424)
19 TIGR00450 mnmE_trmE_thdF tRNA 99.9 6.6E-23 1.4E-27 199.1 13.6 204 60-283 156-360 (442)
20 PLN03071 GTP-binding nuclear p 99.9 8.1E-22 1.8E-26 175.3 19.3 194 113-318 11-215 (219)
21 cd01895 EngA2 EngA2 subfamily. 99.9 1.1E-21 2.4E-26 166.5 19.0 165 115-281 2-173 (174)
22 cd01898 Obg Obg subfamily. Th 99.9 2.5E-22 5.5E-27 170.8 14.8 162 117-282 2-170 (170)
23 TIGR03594 GTPase_EngA ribosome 99.9 9.2E-22 2E-26 192.2 20.0 168 114-283 171-344 (429)
24 PRK03003 GTP-binding protein D 99.9 5.1E-22 1.1E-26 195.7 18.3 162 116-284 39-200 (472)
25 TIGR03156 GTP_HflX GTP-binding 99.9 9.1E-22 2E-26 186.1 18.6 158 116-281 190-350 (351)
26 PRK03003 GTP-binding protein D 99.9 9E-22 1.9E-26 193.9 18.3 169 114-284 210-383 (472)
27 TIGR03594 GTPase_EngA ribosome 99.9 1.2E-21 2.5E-26 191.4 17.9 161 117-284 1-161 (429)
28 PRK00093 GTP-binding protein D 99.9 2.8E-21 6.2E-26 189.0 20.6 168 114-283 172-344 (435)
29 cd04164 trmE TrmE (MnmE, ThdF, 99.9 3.2E-21 6.9E-26 161.2 18.0 154 117-282 3-156 (157)
30 cd04171 SelB SelB subfamily. 99.9 3.9E-21 8.4E-26 162.1 18.0 154 117-280 2-163 (164)
31 COG0218 Predicted GTPase [Gene 99.9 1.4E-20 3.1E-25 160.1 20.0 168 111-283 20-197 (200)
32 cd04112 Rab26 Rab26 subfamily. 99.9 3E-21 6.4E-26 168.1 16.1 165 117-292 2-172 (191)
33 cd01861 Rab6 Rab6 subfamily. 99.9 5.8E-21 1.3E-25 160.9 17.2 154 117-281 2-160 (161)
34 cd01864 Rab19 Rab19 subfamily. 99.9 6.7E-21 1.5E-25 161.5 17.6 157 115-281 3-164 (165)
35 KOG1191 Mitochondrial GTPase [ 99.9 7.2E-22 1.6E-26 186.1 12.5 168 114-282 267-449 (531)
36 cd04138 H_N_K_Ras_like H-Ras/N 99.9 5.6E-21 1.2E-25 160.7 16.7 154 117-282 3-161 (162)
37 cd04120 Rab12 Rab12 subfamily. 99.9 7E-21 1.5E-25 166.9 17.7 156 117-283 2-163 (202)
38 cd04154 Arl2 Arl2 subfamily. 99.9 5.7E-21 1.2E-25 163.4 16.7 154 114-280 13-172 (173)
39 cd04149 Arf6 Arf6 subfamily. 99.9 4.9E-21 1.1E-25 163.3 16.2 153 115-280 9-167 (168)
40 KOG0092 GTPase Rab5/YPT51 and 99.9 2.3E-21 5E-26 162.1 13.6 163 114-286 4-170 (200)
41 cd01874 Cdc42 Cdc42 subfamily. 99.9 6.1E-21 1.3E-25 163.8 16.7 155 116-281 2-173 (175)
42 PRK09518 bifunctional cytidyla 99.9 5.9E-21 1.3E-25 196.5 19.6 162 116-284 276-437 (712)
43 PRK09518 bifunctional cytidyla 99.9 6.5E-21 1.4E-25 196.2 19.8 169 114-284 449-622 (712)
44 cd04142 RRP22 RRP22 subfamily. 99.9 5.9E-21 1.3E-25 167.1 16.7 166 117-284 2-175 (198)
45 PRK04213 GTP-binding protein; 99.9 1.3E-20 2.7E-25 165.2 18.6 161 114-284 8-193 (201)
46 cd04158 ARD1 ARD1 subfamily. 99.9 6.5E-21 1.4E-25 162.6 16.1 158 117-287 1-165 (169)
47 TIGR03598 GTPase_YsxC ribosome 99.9 9.8E-21 2.1E-25 163.1 17.3 157 111-272 14-179 (179)
48 cd04136 Rap_like Rap-like subf 99.9 5.8E-21 1.2E-25 161.1 15.6 155 116-282 2-162 (163)
49 cd01879 FeoB Ferrous iron tran 99.9 4.7E-21 1E-25 160.7 14.9 156 120-282 1-156 (158)
50 cd01867 Rab8_Rab10_Rab13_like 99.9 6.7E-21 1.4E-25 162.0 16.0 157 116-282 4-164 (167)
51 COG0536 Obg Predicted GTPase [ 99.9 7E-22 1.5E-26 179.1 10.5 206 30-284 120-334 (369)
52 smart00173 RAS Ras subfamily o 99.9 4.9E-21 1.1E-25 162.0 14.8 155 117-283 2-162 (164)
53 cd01875 RhoG RhoG subfamily. 99.9 7.7E-21 1.7E-25 165.5 16.2 159 115-284 3-178 (191)
54 cd04133 Rop_like Rop subfamily 99.9 6.5E-21 1.4E-25 163.7 15.5 156 117-283 3-173 (176)
55 cd04145 M_R_Ras_like M-Ras/R-R 99.9 9.4E-21 2E-25 160.0 16.2 155 116-282 3-163 (164)
56 cd01878 HflX HflX subfamily. 99.9 1.5E-20 3.2E-25 165.2 18.0 160 116-282 42-204 (204)
57 cd01860 Rab5_related Rab5-rela 99.9 1.3E-20 2.7E-25 159.2 17.0 156 116-282 2-162 (163)
58 cd04160 Arfrp1 Arfrp1 subfamil 99.9 6.5E-21 1.4E-25 161.7 15.2 155 117-280 1-166 (167)
59 cd04140 ARHI_like ARHI subfami 99.9 9.1E-21 2E-25 160.9 16.0 153 117-281 3-163 (165)
60 cd01865 Rab3 Rab3 subfamily. 99.9 8.9E-21 1.9E-25 160.9 15.9 155 117-282 3-162 (165)
61 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.9 1.3E-20 2.8E-25 157.7 16.3 163 113-285 20-187 (221)
62 PRK00093 GTP-binding protein D 99.9 8.3E-21 1.8E-25 185.8 17.8 160 116-282 2-161 (435)
63 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.8E-20 3.9E-25 158.9 17.6 154 117-282 2-165 (168)
64 cd04122 Rab14 Rab14 subfamily. 99.9 8.8E-21 1.9E-25 161.1 15.7 155 116-282 3-163 (166)
65 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 8.7E-21 1.9E-25 162.4 15.6 155 116-283 3-164 (172)
66 cd04121 Rab40 Rab40 subfamily. 99.9 1.6E-20 3.4E-25 163.1 17.2 158 114-283 5-167 (189)
67 cd04134 Rho3 Rho3 subfamily. 99.9 1.1E-20 2.3E-25 164.3 16.1 157 117-284 2-175 (189)
68 PLN03118 Rab family protein; P 99.9 9.1E-21 2E-25 167.6 15.8 165 114-288 13-182 (211)
69 PF00009 GTP_EFTU: Elongation 99.9 6E-21 1.3E-25 165.7 14.3 157 115-283 3-187 (188)
70 cd01889 SelB_euk SelB subfamil 99.9 1.6E-20 3.4E-25 163.6 16.9 157 117-284 2-187 (192)
71 cd01868 Rab11_like Rab11-like. 99.9 1.3E-20 2.9E-25 159.5 16.0 156 116-282 4-164 (165)
72 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 1.2E-20 2.7E-25 160.0 15.6 156 116-282 3-163 (166)
73 cd00877 Ran Ran (Ras-related n 99.9 1E-20 2.3E-25 160.9 15.0 158 117-286 2-162 (166)
74 COG1084 Predicted GTPase [Gene 99.9 1.7E-20 3.6E-25 169.5 17.0 168 112-283 165-336 (346)
75 cd04119 RJL RJL (RabJ-Like) su 99.9 1.4E-20 3.1E-25 159.1 15.7 155 117-282 2-166 (168)
76 cd01890 LepA LepA subfamily. 99.9 1.5E-20 3.3E-25 161.4 15.9 155 117-283 2-177 (179)
77 cd04175 Rap1 Rap1 subgroup. T 99.9 1.1E-20 2.3E-25 160.0 14.9 155 116-282 2-162 (164)
78 cd00881 GTP_translation_factor 99.9 1.9E-20 4.2E-25 161.6 16.5 157 117-284 1-188 (189)
79 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 1.5E-20 3.3E-25 164.9 16.1 158 117-284 2-169 (201)
80 smart00174 RHO Rho (Ras homolo 99.9 1.1E-20 2.3E-25 161.6 14.6 154 118-282 1-171 (174)
81 cd04116 Rab9 Rab9 subfamily. 99.9 2.9E-20 6.3E-25 158.3 17.3 156 116-281 6-169 (170)
82 cd04157 Arl6 Arl6 subfamily. 99.9 1.7E-20 3.6E-25 158.1 15.6 151 117-280 1-161 (162)
83 cd01871 Rac1_like Rac1-like su 99.9 1.9E-20 4.1E-25 160.6 16.1 154 117-281 3-173 (174)
84 cd01866 Rab2 Rab2 subfamily. 99.9 1.7E-20 3.8E-25 159.7 15.8 157 116-282 5-165 (168)
85 cd04124 RabL2 RabL2 subfamily. 99.9 2.8E-20 6.1E-25 157.3 16.8 154 117-283 2-158 (161)
86 cd04150 Arf1_5_like Arf1-Arf5- 99.9 3.2E-20 6.9E-25 156.8 17.1 151 117-280 2-158 (159)
87 smart00177 ARF ARF-like small 99.9 2.6E-20 5.6E-25 159.9 16.8 156 114-282 12-173 (175)
88 PRK11058 GTPase HflX; Provisio 99.9 2.5E-20 5.4E-25 180.2 18.6 163 116-284 198-363 (426)
89 cd04113 Rab4 Rab4 subfamily. 99.9 1.9E-20 4.2E-25 157.9 15.6 156 117-282 2-161 (161)
90 PRK00454 engB GTP-binding prot 99.9 7.1E-20 1.5E-24 159.6 19.7 166 114-284 23-195 (196)
91 PLN00223 ADP-ribosylation fact 99.9 3.1E-20 6.7E-25 160.3 17.1 157 114-283 16-178 (181)
92 cd04144 Ras2 Ras2 subfamily. 99.9 1E-20 2.2E-25 164.6 14.0 155 117-283 1-163 (190)
93 cd01881 Obg_like The Obg-like 99.9 6.8E-21 1.5E-25 162.6 12.8 159 120-281 1-175 (176)
94 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 2.2E-20 4.9E-25 161.3 16.0 156 115-281 5-178 (182)
95 smart00178 SAR Sar1p-like memb 99.9 2.6E-20 5.6E-25 161.2 16.3 155 114-281 16-183 (184)
96 cd04156 ARLTS1 ARLTS1 subfamil 99.9 3E-20 6.6E-25 156.4 16.1 152 117-280 1-159 (160)
97 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 3.1E-20 6.7E-25 165.8 16.8 159 114-283 12-188 (232)
98 cd04131 Rnd Rnd subfamily. Th 99.8 2.5E-20 5.5E-25 160.4 15.6 154 117-281 3-174 (178)
99 cd04176 Rap2 Rap2 subgroup. T 99.8 2.1E-20 4.5E-25 158.0 14.8 154 117-282 3-162 (163)
100 PTZ00369 Ras-like protein; Pro 99.8 2.3E-20 5.1E-25 162.1 15.3 158 115-284 5-168 (189)
101 cd04132 Rho4_like Rho4-like su 99.8 3E-20 6.5E-25 160.9 16.0 157 117-284 2-168 (187)
102 cd01893 Miro1 Miro1 subfamily. 99.8 3.8E-20 8.2E-25 157.3 16.3 156 117-283 2-164 (166)
103 cd04135 Tc10 TC10 subfamily. 99.8 2.6E-20 5.6E-25 159.2 15.2 155 117-282 2-173 (174)
104 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 3.5E-20 7.6E-25 158.3 16.0 156 117-284 2-166 (170)
105 cd04128 Spg1 Spg1p. Spg1p (se 99.8 3.8E-20 8.2E-25 159.9 16.2 157 117-286 2-169 (182)
106 cd01863 Rab18 Rab18 subfamily. 99.8 6.2E-20 1.3E-24 154.7 17.1 155 117-281 2-160 (161)
107 KOG1489 Predicted GTP-binding 99.8 8.4E-21 1.8E-25 170.1 12.1 160 117-281 198-365 (366)
108 cd04117 Rab15 Rab15 subfamily. 99.8 4.4E-20 9.5E-25 156.2 16.0 154 117-281 2-160 (161)
109 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 5.2E-20 1.1E-24 159.2 16.8 160 115-283 3-170 (183)
110 smart00175 RAB Rab subfamily o 99.8 4.5E-20 9.8E-25 155.7 15.9 156 117-283 2-162 (164)
111 cd00157 Rho Rho (Ras homology) 99.8 3.1E-20 6.8E-25 157.9 15.1 153 117-280 2-170 (171)
112 cd04125 RabA_like RabA-like su 99.8 3.8E-20 8.3E-25 160.5 15.7 157 117-283 2-162 (188)
113 cd04101 RabL4 RabL4 (Rab-like4 99.8 7.1E-20 1.5E-24 154.8 17.0 155 117-282 2-163 (164)
114 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 5.7E-20 1.2E-24 157.6 16.5 153 115-280 15-173 (174)
115 cd04151 Arl1 Arl1 subfamily. 99.8 5.3E-20 1.2E-24 155.0 15.8 151 117-280 1-157 (158)
116 cd04126 Rab20 Rab20 subfamily. 99.8 4.8E-20 1E-24 163.6 16.0 154 117-283 2-190 (220)
117 cd04109 Rab28 Rab28 subfamily. 99.8 7E-20 1.5E-24 162.4 16.9 157 117-284 2-167 (215)
118 cd04106 Rab23_lke Rab23-like s 99.8 7.8E-20 1.7E-24 154.1 16.1 153 117-281 2-161 (162)
119 PTZ00133 ADP-ribosylation fact 99.8 8.3E-20 1.8E-24 157.8 16.6 157 114-283 16-178 (182)
120 cd00879 Sar1 Sar1 subfamily. 99.8 1.1E-19 2.4E-24 157.8 17.3 156 114-282 18-190 (190)
121 cd04127 Rab27A Rab27a subfamil 99.8 7.5E-20 1.6E-24 157.2 16.0 157 115-282 4-176 (180)
122 cd01862 Rab7 Rab7 subfamily. 99.8 1.1E-19 2.3E-24 154.8 16.7 158 117-284 2-168 (172)
123 KOG0394 Ras-related GTPase [Ge 99.8 3E-20 6.5E-25 154.0 12.6 160 116-284 10-179 (210)
124 cd04110 Rab35 Rab35 subfamily. 99.8 7.6E-20 1.6E-24 160.3 16.0 157 115-283 6-167 (199)
125 cd00878 Arf_Arl Arf (ADP-ribos 99.8 7.8E-20 1.7E-24 153.7 15.3 151 117-280 1-157 (158)
126 cd00154 Rab Rab family. Rab G 99.8 1.2E-19 2.7E-24 151.3 16.3 153 117-279 2-158 (159)
127 cd04123 Rab21 Rab21 subfamily. 99.8 1.2E-19 2.6E-24 152.5 16.3 155 117-282 2-161 (162)
128 cd04118 Rab24 Rab24 subfamily. 99.8 1E-19 2.2E-24 158.4 16.3 155 117-283 2-166 (193)
129 cd01870 RhoA_like RhoA-like su 99.8 1E-19 2.2E-24 155.6 15.8 156 116-282 2-174 (175)
130 cd04147 Ras_dva Ras-dva subfam 99.8 1.3E-19 2.7E-24 158.7 16.5 162 117-289 1-169 (198)
131 KOG0084 GTPase Rab1/YPT1, smal 99.8 8.9E-20 1.9E-24 153.2 14.7 161 114-283 8-172 (205)
132 PLN03110 Rab GTPase; Provision 99.8 1.1E-19 2.5E-24 161.2 16.2 158 115-283 12-174 (216)
133 TIGR00231 small_GTP small GTP- 99.8 1.6E-19 3.4E-24 150.1 16.0 157 116-279 2-160 (161)
134 cd04177 RSR1 RSR1 subgroup. R 99.8 1.5E-19 3.4E-24 153.7 16.0 155 117-282 3-163 (168)
135 cd04139 RalA_RalB RalA/RalB su 99.8 1.7E-19 3.8E-24 152.0 15.9 153 117-282 2-161 (164)
136 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 1.7E-19 3.8E-24 160.1 16.6 156 116-282 2-175 (222)
137 cd04114 Rab30 Rab30 subfamily. 99.8 2.3E-19 5.1E-24 152.4 16.6 157 115-282 7-168 (169)
138 cd04130 Wrch_1 Wrch-1 subfamil 99.8 1.2E-19 2.6E-24 155.3 14.7 152 117-279 2-170 (173)
139 TIGR02528 EutP ethanolamine ut 99.8 1.4E-19 2.9E-24 149.6 14.5 140 117-279 2-141 (142)
140 cd00876 Ras Ras family. The R 99.8 2E-19 4.4E-24 150.9 15.7 154 117-282 1-160 (160)
141 cd01892 Miro2 Miro2 subfamily. 99.8 1.2E-19 2.5E-24 154.9 14.4 158 115-283 4-166 (169)
142 cd00880 Era_like Era (E. coli 99.8 3E-19 6.5E-24 148.5 16.1 158 120-281 1-162 (163)
143 cd04115 Rab33B_Rab33A Rab33B/R 99.8 4E-19 8.7E-24 151.5 16.6 157 116-282 3-168 (170)
144 cd04143 Rhes_like Rhes_like su 99.8 3.8E-19 8.2E-24 160.7 17.2 154 117-282 2-170 (247)
145 smart00176 RAN Ran (Ras-relate 99.8 6.5E-19 1.4E-23 154.3 17.5 151 121-283 1-154 (200)
146 cd04161 Arl2l1_Arl13_like Arl2 99.8 6E-19 1.3E-23 150.2 16.6 151 117-280 1-166 (167)
147 PRK15467 ethanolamine utilizat 99.8 3.9E-19 8.4E-24 150.1 15.3 146 117-284 3-148 (158)
148 cd04155 Arl3 Arl3 subfamily. 99.8 8.4E-19 1.8E-23 149.6 17.3 155 113-280 12-172 (173)
149 cd01891 TypA_BipA TypA (tyrosi 99.8 6.7E-19 1.4E-23 153.6 16.9 146 117-273 4-172 (194)
150 cd01888 eIF2_gamma eIF2-gamma 99.8 9E-19 1.9E-23 154.0 17.6 160 117-286 2-202 (203)
151 cd04146 RERG_RasL11_like RERG/ 99.8 2.1E-19 4.6E-24 152.3 13.0 154 117-282 1-163 (165)
152 cd04111 Rab39 Rab39 subfamily. 99.8 5E-19 1.1E-23 156.5 15.7 157 116-283 3-166 (211)
153 COG2262 HflX GTPases [General 99.8 5.7E-19 1.2E-23 164.2 16.0 164 115-285 192-358 (411)
154 PRK09554 feoB ferrous iron tra 99.8 4.8E-19 1E-23 182.1 17.0 162 115-283 3-168 (772)
155 cd01884 EF_Tu EF-Tu subfamily. 99.8 2E-18 4.3E-23 150.5 18.0 145 116-271 3-171 (195)
156 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 5.6E-19 1.2E-23 150.0 14.0 149 118-280 2-163 (164)
157 cd04148 RGK RGK subfamily. Th 99.8 7.2E-19 1.6E-23 156.6 15.1 155 117-283 2-163 (221)
158 PLN03108 Rab family protein; P 99.8 9.8E-19 2.1E-23 154.5 15.8 158 116-283 7-168 (210)
159 TIGR00487 IF-2 translation ini 99.8 1.3E-18 2.8E-23 174.2 18.5 156 113-280 85-247 (587)
160 PRK09602 translation-associate 99.8 1.8E-18 3.9E-23 165.7 18.7 190 117-316 3-301 (396)
161 PF00025 Arf: ADP-ribosylation 99.8 1.5E-18 3.2E-23 149.1 16.1 156 113-281 12-174 (175)
162 PRK05306 infB translation init 99.8 9.6E-19 2.1E-23 179.1 17.1 157 112-280 287-449 (787)
163 cd04103 Centaurin_gamma Centau 99.8 9.3E-19 2E-23 147.7 14.1 149 117-281 2-157 (158)
164 cd04159 Arl10_like Arl10-like 99.8 2E-18 4.3E-23 144.1 16.0 151 118-280 2-158 (159)
165 cd01896 DRG The developmentall 99.8 1.9E-18 4.1E-23 155.0 16.7 155 117-282 2-225 (233)
166 cd04137 RheB Rheb (Ras Homolog 99.8 1.3E-18 2.7E-23 149.7 14.9 156 117-284 3-164 (180)
167 COG0370 FeoB Fe2+ transport sy 99.8 1.2E-18 2.7E-23 171.3 16.3 164 116-286 4-167 (653)
168 cd04166 CysN_ATPS CysN_ATPS su 99.8 8.3E-19 1.8E-23 154.8 13.5 147 117-274 1-185 (208)
169 KOG0078 GTP-binding protein SE 99.8 1.9E-18 4E-23 147.3 14.8 158 114-284 11-175 (207)
170 cd04129 Rho2 Rho2 subfamily. 99.8 1.7E-18 3.7E-23 150.2 15.0 157 117-284 3-174 (187)
171 cd01873 RhoBTB RhoBTB subfamil 99.8 2.1E-18 4.5E-23 150.6 15.5 154 116-281 3-194 (195)
172 PF01926 MMR_HSR1: 50S ribosom 99.8 1.5E-18 3.3E-23 138.7 13.0 116 117-235 1-116 (116)
173 KOG0098 GTPase Rab2, small G p 99.8 1E-18 2.2E-23 145.2 12.3 157 116-282 7-167 (216)
174 cd01876 YihA_EngB The YihA (En 99.8 1.1E-17 2.4E-22 141.0 19.0 160 118-282 2-170 (170)
175 CHL00189 infB translation init 99.8 2.6E-18 5.6E-23 174.5 17.3 157 113-282 242-409 (742)
176 TIGR00491 aIF-2 translation in 99.8 3.4E-18 7.4E-23 170.9 16.7 156 113-280 2-213 (590)
177 COG0532 InfB Translation initi 99.8 4.3E-18 9.3E-23 163.2 16.5 155 113-280 3-167 (509)
178 PTZ00132 GTP-binding nuclear p 99.8 1.1E-17 2.5E-22 148.2 18.0 170 114-295 8-180 (215)
179 PF00071 Ras: Ras family; Int 99.8 2.4E-18 5.2E-23 145.1 13.0 156 117-282 1-160 (162)
180 TIGR00475 selB selenocysteine- 99.8 5.3E-18 1.2E-22 170.3 17.7 157 117-284 2-167 (581)
181 TIGR00437 feoB ferrous iron tr 99.8 3.4E-18 7.3E-23 172.0 16.0 154 122-282 1-154 (591)
182 KOG0080 GTPase Rab18, small G 99.8 1.9E-18 4.1E-23 140.1 11.4 167 114-291 10-182 (209)
183 cd04168 TetM_like Tet(M)-like 99.8 1.2E-17 2.6E-22 150.0 16.3 157 117-284 1-236 (237)
184 cd04165 GTPBP1_like GTPBP1-lik 99.8 2.4E-17 5.1E-22 146.8 17.5 153 117-280 1-220 (224)
185 cd01899 Ygr210 Ygr210 subfamil 99.8 2.3E-17 5E-22 153.7 17.8 169 118-292 1-278 (318)
186 TIGR01393 lepA GTP-binding pro 99.8 1.8E-17 3.8E-22 166.8 17.7 156 117-284 5-181 (595)
187 PRK12317 elongation factor 1-a 99.8 8.3E-18 1.8E-22 164.0 15.0 151 114-275 5-197 (425)
188 COG1163 DRG Predicted GTPase [ 99.8 5.2E-18 1.1E-22 152.9 12.1 157 117-283 65-289 (365)
189 PRK10512 selenocysteinyl-tRNA- 99.8 4.7E-17 1E-21 164.1 19.7 157 117-284 2-167 (614)
190 PRK09866 hypothetical protein; 99.8 8E-17 1.7E-21 158.0 20.4 115 163-281 230-351 (741)
191 cd01886 EF-G Elongation factor 99.8 3.8E-17 8.3E-22 149.3 16.9 113 117-240 1-130 (270)
192 PF10662 PduV-EutP: Ethanolami 99.7 3.2E-17 7E-22 133.7 13.9 139 117-279 3-142 (143)
193 KOG0087 GTPase Rab11/YPT3, sma 99.7 1.4E-17 3E-22 141.4 11.5 158 115-282 14-175 (222)
194 KOG0073 GTP-binding ADP-ribosy 99.7 7.6E-17 1.6E-21 131.4 15.2 156 114-283 15-178 (185)
195 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 6.2E-17 1.3E-21 141.5 15.6 173 117-292 2-194 (196)
196 cd01883 EF1_alpha Eukaryotic e 99.7 1.9E-17 4.2E-22 147.2 12.2 146 117-272 1-194 (219)
197 PRK05433 GTP-binding protein L 99.7 7E-17 1.5E-21 162.6 17.5 157 116-284 8-185 (600)
198 cd04169 RF3 RF3 subfamily. Pe 99.7 1.5E-16 3.2E-21 145.4 17.7 114 117-241 4-138 (267)
199 cd00882 Ras_like_GTPase Ras-li 99.7 8.5E-17 1.8E-21 132.0 14.0 150 120-279 1-156 (157)
200 PRK04004 translation initiatio 99.7 9.3E-17 2E-21 161.1 16.9 156 113-280 4-215 (586)
201 KOG1145 Mitochondrial translat 99.7 1.3E-16 2.8E-21 152.1 16.8 156 113-281 151-314 (683)
202 PRK10218 GTP-binding protein; 99.7 2E-16 4.3E-21 158.7 18.6 159 116-285 6-197 (607)
203 CHL00071 tufA elongation facto 99.7 1.9E-16 4.1E-21 153.4 17.8 145 115-270 12-180 (409)
204 PRK12736 elongation factor Tu; 99.7 2.3E-16 4.9E-21 152.1 18.3 160 114-284 11-202 (394)
205 TIGR01394 TypA_BipA GTP-bindin 99.7 1.3E-16 2.9E-21 160.1 17.2 158 117-285 3-193 (594)
206 KOG0095 GTPase Rab30, small G 99.7 5E-17 1.1E-21 130.2 11.2 156 117-282 9-168 (213)
207 cd04170 EF-G_bact Elongation f 99.7 2.5E-16 5.4E-21 144.4 16.4 113 117-240 1-130 (268)
208 COG3596 Predicted GTPase [Gene 99.7 7.8E-17 1.7E-21 142.7 12.3 171 113-285 37-224 (296)
209 PLN03127 Elongation factor Tu; 99.7 3.8E-16 8.1E-21 152.2 18.3 159 114-283 60-252 (447)
210 TIGR03680 eif2g_arch translati 99.7 2.8E-16 6.2E-21 152.0 17.3 160 114-283 3-196 (406)
211 KOG0079 GTP-binding protein H- 99.7 7.2E-17 1.6E-21 129.1 10.5 154 117-283 10-169 (198)
212 KOG0462 Elongation factor-type 99.7 2.4E-16 5.3E-21 150.3 15.5 188 115-324 60-266 (650)
213 KOG0086 GTPase Rab4, small G p 99.7 2.3E-16 4.9E-21 126.9 12.7 155 117-281 11-169 (214)
214 PRK12735 elongation factor Tu; 99.7 8.9E-16 1.9E-20 148.1 18.9 159 114-283 11-203 (396)
215 PRK04000 translation initiatio 99.7 7E-16 1.5E-20 149.3 17.4 160 115-284 9-202 (411)
216 PRK00049 elongation factor Tu; 99.7 1.8E-15 4E-20 145.9 19.1 159 114-283 11-203 (396)
217 TIGR00485 EF-Tu translation el 99.7 1.5E-15 3.3E-20 146.5 18.5 158 114-282 11-200 (394)
218 TIGR00483 EF-1_alpha translati 99.7 7.7E-16 1.7E-20 150.1 16.1 150 115-274 7-198 (426)
219 KOG0070 GTP-binding ADP-ribosy 99.7 3.7E-16 8.1E-21 130.5 11.8 160 112-284 14-179 (181)
220 cd01885 EF2 EF2 (for archaea a 99.7 1.7E-15 3.8E-20 134.4 16.7 112 117-239 2-138 (222)
221 KOG0088 GTPase Rab21, small G 99.7 4.4E-17 9.5E-22 131.8 5.3 154 116-282 14-174 (218)
222 KOG0093 GTPase Rab3, small G p 99.7 7.7E-16 1.7E-20 123.2 12.3 156 117-284 23-184 (193)
223 PRK12739 elongation factor G; 99.7 1.2E-15 2.6E-20 156.9 16.7 116 114-240 7-139 (691)
224 PRK05124 cysN sulfate adenylyl 99.7 5.4E-16 1.2E-20 152.4 13.1 151 114-274 26-216 (474)
225 KOG1144 Translation initiation 99.7 4.9E-16 1.1E-20 152.1 12.2 161 110-282 470-686 (1064)
226 PRK00741 prfC peptide chain re 99.7 2.4E-15 5.1E-20 149.3 17.3 116 114-240 9-145 (526)
227 cd04104 p47_IIGP_like p47 (47- 99.7 1.6E-15 3.5E-20 132.6 14.0 160 116-284 2-185 (197)
228 TIGR00484 EF-G translation elo 99.7 6.4E-16 1.4E-20 158.9 13.1 143 114-268 9-171 (689)
229 PLN03126 Elongation factor Tu; 99.7 4.3E-15 9.3E-20 145.6 18.2 147 114-271 80-250 (478)
230 TIGR02034 CysN sulfate adenyly 99.7 1.4E-15 3E-20 147.2 14.5 147 117-273 2-187 (406)
231 PRK09435 membrane ATPase/prote 99.7 2.8E-15 6E-20 139.9 15.7 185 114-319 55-296 (332)
232 PRK00007 elongation factor G; 99.7 2.9E-15 6.4E-20 154.0 17.5 116 114-240 9-141 (693)
233 cd04167 Snu114p Snu114p subfam 99.6 2.2E-15 4.8E-20 133.4 13.9 156 117-283 2-211 (213)
234 KOG1424 Predicted GTP-binding 99.6 2.9E-16 6.3E-21 149.0 8.6 153 14-180 218-376 (562)
235 KOG0395 Ras-related GTPase [Ge 99.6 2.3E-15 4.9E-20 131.1 13.1 158 115-284 3-166 (196)
236 cd04105 SR_beta Signal recogni 99.6 5.8E-15 1.2E-19 129.7 15.7 114 117-241 2-124 (203)
237 KOG1490 GTP-binding protein CR 99.6 4.4E-16 9.6E-21 147.1 9.0 166 112-280 165-338 (620)
238 KOG0091 GTPase Rab39, small G 99.6 1.5E-15 3.2E-20 123.6 10.3 157 115-282 8-172 (213)
239 PTZ00141 elongation factor 1- 99.6 6.6E-15 1.4E-19 143.7 16.3 148 115-273 7-203 (446)
240 PRK05506 bifunctional sulfate 99.6 4.7E-15 1E-19 151.3 15.8 150 114-273 23-211 (632)
241 COG2229 Predicted GTPase [Gene 99.6 1.8E-14 3.9E-19 120.3 16.4 159 113-281 8-176 (187)
242 PTZ00327 eukaryotic translatio 99.6 9.4E-15 2E-19 142.3 16.4 160 115-284 34-234 (460)
243 cd04102 RabL3 RabL3 (Rab-like3 99.6 2.4E-14 5.2E-19 125.5 15.6 140 117-268 2-175 (202)
244 PRK13351 elongation factor G; 99.6 1.7E-14 3.7E-19 148.6 17.1 117 114-241 7-140 (687)
245 KOG0075 GTP-binding ADP-ribosy 99.6 7.5E-15 1.6E-19 117.5 10.9 154 117-282 22-181 (186)
246 TIGR00503 prfC peptide chain r 99.6 6.7E-15 1.5E-19 146.1 13.0 160 114-291 10-193 (527)
247 COG1100 GTPase SAR1 and relate 99.6 3.9E-14 8.5E-19 125.5 16.2 159 116-283 6-185 (219)
248 KOG0076 GTP-binding ADP-ribosy 99.6 4E-15 8.6E-20 122.5 8.7 160 117-285 19-189 (197)
249 COG0481 LepA Membrane GTPase L 99.6 9.5E-15 2.1E-19 137.5 12.1 158 116-285 10-188 (603)
250 KOG0393 Ras-related small GTPa 99.6 3.2E-15 7E-20 128.0 8.1 161 114-285 3-181 (198)
251 PTZ00258 GTP-binding protein; 99.6 2.7E-14 5.9E-19 135.7 15.2 90 114-206 20-126 (390)
252 KOG0097 GTPase Rab14, small G 99.6 2.8E-14 6E-19 113.5 12.6 155 117-281 13-171 (215)
253 PF08477 Miro: Miro-like prote 99.6 6.9E-15 1.5E-19 117.6 8.1 112 117-237 1-119 (119)
254 cd01882 BMS1 Bms1. Bms1 is an 99.6 1.1E-13 2.5E-18 123.4 16.3 135 116-269 40-182 (225)
255 PTZ00099 rab6; Provisional 99.6 3.7E-14 8.1E-19 121.7 11.8 118 158-286 24-145 (176)
256 PLN00023 GTP-binding protein; 99.6 9.5E-14 2.1E-18 128.1 14.8 122 111-241 17-166 (334)
257 KOG0071 GTP-binding ADP-ribosy 99.5 1.3E-13 2.9E-18 109.6 13.3 157 114-283 16-178 (180)
258 PLN00043 elongation factor 1-a 99.5 1.3E-13 2.9E-18 134.6 16.1 148 115-273 7-203 (447)
259 KOG0083 GTPase Rab26/Rab37, sm 99.5 2.4E-15 5.1E-20 118.4 2.4 162 120-292 2-169 (192)
260 cd01853 Toc34_like Toc34-like 99.5 1.6E-13 3.5E-18 123.8 14.4 128 114-241 30-164 (249)
261 KOG0074 GTP-binding ADP-ribosy 99.5 5.6E-14 1.2E-18 111.9 9.7 161 111-283 13-179 (185)
262 KOG0081 GTPase Rab27, small G 99.5 2E-14 4.4E-19 116.5 6.6 153 117-283 11-181 (219)
263 PRK12740 elongation factor G; 99.5 1.8E-13 3.8E-18 140.8 15.3 109 121-240 1-126 (668)
264 COG4108 PrfC Peptide chain rel 99.5 2.9E-13 6.2E-18 126.6 14.6 119 114-243 11-150 (528)
265 PRK13768 GTPase; Provisional 99.5 4.9E-13 1.1E-17 121.3 15.3 120 164-285 98-249 (253)
266 cd01850 CDC_Septin CDC/Septin. 99.5 9.5E-13 2.1E-17 120.9 17.2 130 116-248 5-165 (276)
267 COG1217 TypA Predicted membran 99.5 1.5E-13 3.2E-18 129.2 11.5 212 117-346 7-258 (603)
268 KOG1532 GTPase XAB1, interacts 99.5 8.5E-14 1.8E-18 122.9 8.6 152 163-316 116-297 (366)
269 COG5256 TEF1 Translation elong 99.5 5.8E-13 1.3E-17 124.3 14.2 150 115-274 7-202 (428)
270 PRK09601 GTP-binding protein Y 99.5 7.3E-13 1.6E-17 124.6 14.9 88 116-206 3-107 (364)
271 KOG0410 Predicted GTP binding 99.5 9.3E-14 2E-18 125.3 8.2 159 113-283 176-341 (410)
272 cd01900 YchF YchF subfamily. 99.5 3.7E-13 8E-18 122.7 11.5 86 118-206 1-103 (274)
273 COG4917 EutP Ethanolamine util 99.5 5.6E-13 1.2E-17 104.2 10.5 142 117-281 3-144 (148)
274 KOG1707 Predicted Ras related/ 99.4 6.8E-13 1.5E-17 128.0 11.5 174 112-295 6-188 (625)
275 TIGR00991 3a0901s02IAP34 GTP-b 99.4 3.4E-12 7.4E-17 117.2 15.6 126 113-240 36-167 (313)
276 PRK14845 translation initiatio 99.4 2.2E-12 4.9E-17 135.4 15.5 144 126-281 472-671 (1049)
277 COG5257 GCD11 Translation init 99.4 2.9E-12 6.3E-17 115.6 13.4 164 114-287 9-206 (415)
278 TIGR02836 spore_IV_A stage IV 99.4 4.6E-12 1E-16 119.0 15.1 222 116-343 18-313 (492)
279 KOG3883 Ras family small GTPas 99.4 5E-12 1.1E-16 102.1 13.0 163 114-284 8-176 (198)
280 KOG0072 GTP-binding ADP-ribosy 99.4 6.4E-13 1.4E-17 106.2 7.7 158 114-284 17-180 (182)
281 PF03308 ArgK: ArgK protein; 99.4 6.4E-13 1.4E-17 117.9 7.6 184 114-317 28-264 (266)
282 KOG0461 Selenocysteine-specifi 99.4 9.9E-12 2.1E-16 113.0 15.2 158 116-284 8-194 (522)
283 PTZ00416 elongation factor 2; 99.4 3.5E-12 7.5E-17 133.5 14.1 115 114-239 18-157 (836)
284 PRK07560 elongation factor EF- 99.4 3E-12 6.5E-17 132.6 13.2 115 114-239 19-152 (731)
285 COG3276 SelB Selenocysteine-sp 99.4 8.3E-12 1.8E-16 117.5 14.2 156 117-282 2-161 (447)
286 PLN00116 translation elongatio 99.4 4.5E-12 9.8E-17 132.9 13.5 115 114-239 18-163 (843)
287 PF00350 Dynamin_N: Dynamin fa 99.4 5.4E-12 1.2E-16 107.1 11.3 112 118-236 1-168 (168)
288 KOG4252 GTP-binding protein [S 99.4 1.8E-13 3.8E-18 113.2 1.9 158 114-282 19-180 (246)
289 PF04548 AIG1: AIG1 family; I 99.4 4.7E-12 1E-16 112.0 10.6 166 117-285 2-188 (212)
290 COG2895 CysN GTPases - Sulfate 99.4 9.2E-12 2E-16 113.8 12.5 149 115-273 6-193 (431)
291 COG1703 ArgK Putative periplas 99.3 1.5E-11 3.2E-16 110.7 12.9 186 114-319 50-290 (323)
292 PF09439 SRPRB: Signal recogni 99.3 3.2E-12 6.9E-17 109.0 8.1 119 115-243 3-129 (181)
293 KOG1673 Ras GTPases [General f 99.3 9.8E-12 2.1E-16 100.7 10.3 170 113-293 18-196 (205)
294 KOG1486 GTP-binding protein DR 99.3 5.8E-12 1.2E-16 110.1 9.6 158 116-283 63-288 (364)
295 KOG0090 Signal recognition par 99.3 2.2E-11 4.8E-16 104.1 13.0 116 116-241 39-160 (238)
296 PF04670 Gtr1_RagA: Gtr1/RagA 99.3 2.3E-11 5E-16 108.2 13.4 162 117-283 1-176 (232)
297 KOG0077 Vesicle coat complex C 99.3 5.2E-12 1.1E-16 103.5 8.0 154 114-280 19-190 (193)
298 TIGR00490 aEF-2 translation el 99.3 4.8E-12 1E-16 130.7 9.6 115 115-240 19-152 (720)
299 TIGR00750 lao LAO/AO transport 99.3 3.1E-11 6.6E-16 112.4 14.0 104 161-282 125-237 (300)
300 smart00053 DYNc Dynamin, GTPas 99.3 3.5E-11 7.5E-16 107.7 13.2 125 114-241 25-207 (240)
301 PF03029 ATP_bind_1: Conserved 99.3 1.6E-11 3.5E-16 110.2 10.4 115 164-281 92-235 (238)
302 TIGR00073 hypB hydrogenase acc 99.3 2.2E-11 4.7E-16 107.3 10.6 151 114-282 21-206 (207)
303 COG0012 Predicted GTPase, prob 99.3 1.6E-11 3.4E-16 114.1 9.9 86 116-206 3-108 (372)
304 COG0480 FusA Translation elong 99.3 3.1E-11 6.8E-16 122.4 12.4 118 114-242 9-144 (697)
305 KOG0096 GTPase Ran/TC4/GSP1 (n 99.3 1.1E-11 2.4E-16 103.7 7.0 160 116-287 11-173 (216)
306 KOG0458 Elongation factor 1 al 99.2 1.3E-10 2.8E-15 112.5 12.3 151 114-274 176-373 (603)
307 TIGR00993 3a0901s04IAP86 chlor 99.2 2.2E-10 4.7E-15 113.6 13.8 126 114-240 117-250 (763)
308 KOG2486 Predicted GTPase [Gene 99.2 5.6E-11 1.2E-15 105.5 8.5 167 109-281 130-314 (320)
309 PF05049 IIGP: Interferon-indu 99.2 2.6E-10 5.6E-15 107.5 12.9 160 116-284 36-219 (376)
310 COG0050 TufB GTPases - transla 99.2 3.6E-10 7.8E-15 101.1 12.8 158 116-284 13-202 (394)
311 COG0378 HypB Ni2+-binding GTPa 99.2 7E-10 1.5E-14 94.2 13.0 79 198-282 120-200 (202)
312 TIGR00101 ureG urease accessor 99.2 2.4E-10 5.2E-15 100.0 10.5 81 196-282 113-195 (199)
313 PF00735 Septin: Septin; Inte 99.2 6.6E-10 1.4E-14 102.1 13.7 134 117-253 6-169 (281)
314 KOG1487 GTP-binding protein DR 99.1 1.2E-10 2.6E-15 102.3 7.4 157 117-283 61-281 (358)
315 PRK10463 hydrogenase nickel in 99.1 1.5E-10 3.3E-15 105.7 8.2 55 227-281 231-287 (290)
316 KOG4423 GTP-binding protein-li 99.1 1.9E-11 4.1E-16 102.0 -0.6 157 117-283 27-194 (229)
317 cd01858 NGP_1 NGP-1. Autoanti 99.0 5.7E-10 1.2E-14 93.9 7.5 56 115-173 102-157 (157)
318 KOG0465 Mitochondrial elongati 99.0 6.6E-10 1.4E-14 107.9 8.5 117 114-241 38-171 (721)
319 cd04178 Nucleostemin_like Nucl 99.0 5.7E-10 1.2E-14 95.3 7.2 56 115-173 117-172 (172)
320 COG5258 GTPBP1 GTPase [General 99.0 2.4E-09 5.2E-14 99.0 11.2 159 114-281 116-337 (527)
321 KOG1954 Endocytosis/signaling 99.0 3.4E-09 7.5E-14 97.5 12.2 131 115-247 58-232 (532)
322 cd01858 NGP_1 NGP-1. Autoanti 99.0 1.6E-09 3.4E-14 91.2 8.7 92 190-282 3-94 (157)
323 cd01859 MJ1464 MJ1464. This f 99.0 3.4E-09 7.3E-14 89.0 9.6 92 189-284 6-97 (156)
324 COG1161 Predicted GTPases [Gen 98.9 1.5E-09 3.3E-14 101.7 7.0 61 114-177 131-191 (322)
325 KOG0468 U5 snRNP-specific prot 98.9 5.1E-09 1.1E-13 102.6 9.0 119 110-239 123-262 (971)
326 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 3.8E-09 8.3E-14 87.2 6.9 55 117-174 85-139 (141)
327 KOG0466 Translation initiation 98.9 5.3E-09 1.1E-13 94.1 7.8 114 164-287 126-245 (466)
328 KOG0467 Translation elongation 98.9 1.3E-08 2.8E-13 101.3 10.9 113 115-238 9-136 (887)
329 cd01855 YqeH YqeH. YqeH is an 98.9 1.2E-08 2.6E-13 88.6 9.5 96 185-284 24-126 (190)
330 COG5019 CDC3 Septin family pro 98.9 8.4E-08 1.8E-12 89.0 15.0 136 115-253 23-189 (373)
331 TIGR00092 GTP-binding protein 98.8 6.1E-09 1.3E-13 98.3 7.4 90 116-207 3-109 (368)
332 KOG0460 Mitochondrial translat 98.8 5.8E-08 1.3E-12 88.7 13.1 159 115-284 54-246 (449)
333 KOG0464 Elongation factor G [T 98.8 1.6E-08 3.4E-13 94.4 9.2 134 114-259 36-186 (753)
334 cd01849 YlqF_related_GTPase Yl 98.8 1E-08 2.2E-13 86.1 7.0 57 114-173 99-155 (155)
335 TIGR03596 GTPase_YlqF ribosome 98.8 1.4E-08 3E-13 93.5 8.3 60 114-176 117-176 (276)
336 PRK09563 rbgA GTPase YlqF; Rev 98.8 1.1E-08 2.3E-13 94.7 7.5 60 114-176 120-179 (287)
337 cd01855 YqeH YqeH. YqeH is an 98.8 7.7E-09 1.7E-13 89.8 5.7 56 115-173 127-190 (190)
338 KOG2655 Septin family protein 98.8 1.3E-07 2.9E-12 88.2 14.1 135 116-253 22-185 (366)
339 KOG1143 Predicted translation 98.8 1.6E-08 3.5E-13 93.2 7.7 155 116-279 168-384 (591)
340 cd01849 YlqF_related_GTPase Yl 98.8 3.9E-08 8.4E-13 82.5 9.5 82 197-281 1-83 (155)
341 KOG1491 Predicted GTP-binding 98.8 1.3E-08 2.7E-13 93.1 6.2 90 114-206 19-125 (391)
342 cd01851 GBP Guanylate-binding 98.8 4.7E-08 1E-12 87.1 9.8 92 115-209 7-105 (224)
343 cd01856 YlqF YlqF. Proteins o 98.8 2.8E-08 6.1E-13 84.8 7.9 57 114-173 114-170 (171)
344 cd01856 YlqF YlqF. Proteins o 98.7 6.8E-08 1.5E-12 82.4 10.2 92 185-282 9-100 (171)
345 TIGR03597 GTPase_YqeH ribosome 98.7 1.6E-08 3.5E-13 96.4 6.6 119 116-241 155-281 (360)
346 KOG0448 Mitofusin 1 GTPase, in 98.7 1.1E-07 2.4E-12 94.0 12.0 144 115-267 109-310 (749)
347 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 5.1E-08 1.1E-12 80.4 8.4 82 187-270 3-84 (141)
348 KOG1547 Septin CDC10 and relat 98.7 3.2E-07 6.9E-12 80.2 13.3 133 117-252 48-210 (336)
349 TIGR03596 GTPase_YlqF ribosome 98.7 1.6E-07 3.4E-12 86.5 10.4 93 186-284 12-104 (276)
350 KOG3886 GTP-binding protein [S 98.6 8.5E-08 1.8E-12 83.3 7.0 124 116-243 5-133 (295)
351 TIGR00157 ribosome small subun 98.6 1.8E-07 3.9E-12 84.5 9.3 85 192-281 33-121 (245)
352 KOG0463 GTP-binding protein GP 98.6 3.8E-07 8.1E-12 84.4 10.6 159 112-279 130-354 (641)
353 PRK12289 GTPase RsgA; Reviewed 98.6 9E-08 1.9E-12 90.6 5.9 57 117-176 174-237 (352)
354 cd01859 MJ1464 MJ1464. This f 98.6 2E-07 4.3E-12 78.2 7.4 57 114-173 100-156 (156)
355 PRK12288 GTPase RsgA; Reviewed 98.5 1.8E-07 3.9E-12 88.6 7.5 57 117-176 207-270 (347)
356 PRK13796 GTPase YqeH; Provisio 98.5 1.4E-07 3E-12 90.2 6.6 57 116-175 161-222 (365)
357 KOG2423 Nucleolar GTPase [Gene 98.5 7.6E-08 1.6E-12 89.5 4.1 65 110-177 302-366 (572)
358 PRK09563 rbgA GTPase YlqF; Rev 98.5 7.7E-07 1.7E-11 82.4 10.4 92 186-283 15-106 (287)
359 PRK12289 GTPase RsgA; Reviewed 98.5 5.4E-07 1.2E-11 85.4 9.4 85 193-282 87-174 (352)
360 cd03112 CobW_like The function 98.5 5.5E-07 1.2E-11 75.8 8.1 71 162-238 86-158 (158)
361 PRK10416 signal recognition pa 98.5 4.2E-06 9.2E-11 78.4 14.1 149 115-275 114-302 (318)
362 TIGR00157 ribosome small subun 98.4 3.3E-07 7.1E-12 82.8 6.2 57 116-176 121-184 (245)
363 PF03193 DUF258: Protein of un 98.4 2.5E-07 5.5E-12 77.5 4.9 58 116-176 36-100 (161)
364 TIGR01425 SRP54_euk signal rec 98.4 3.6E-06 7.9E-11 81.3 12.7 119 115-240 100-253 (429)
365 KOG3905 Dynein light intermedi 98.4 7.8E-06 1.7E-10 74.6 13.8 160 117-287 54-294 (473)
366 PRK00098 GTPase RsgA; Reviewed 98.4 1.5E-06 3.3E-11 80.8 9.3 84 193-280 78-164 (298)
367 COG0523 Putative GTPases (G3E 98.4 5.7E-06 1.2E-10 77.4 12.8 152 117-275 3-193 (323)
368 KOG2484 GTPase [General functi 98.4 1.9E-07 4E-12 87.2 2.7 64 113-179 250-313 (435)
369 TIGR03597 GTPase_YqeH ribosome 98.4 3.2E-06 7E-11 80.7 11.2 91 187-281 55-151 (360)
370 PF02492 cobW: CobW/HypB/UreG, 98.3 5.5E-06 1.2E-10 71.1 11.2 136 117-261 2-177 (178)
371 TIGR00064 ftsY signal recognit 98.3 1.7E-05 3.7E-10 72.7 14.7 149 115-275 72-260 (272)
372 COG5192 BMS1 GTP-binding prote 98.3 4.4E-06 9.5E-11 81.1 10.4 109 114-241 68-178 (1077)
373 cd01854 YjeQ_engC YjeQ/EngC. 98.3 3.4E-06 7.4E-11 78.1 9.4 83 193-280 76-161 (287)
374 COG1162 Predicted GTPases [Gen 98.3 1.3E-06 2.8E-11 79.8 5.9 61 115-178 164-231 (301)
375 cd00066 G-alpha G protein alph 98.3 9.3E-06 2E-10 76.2 11.8 74 158-240 156-242 (317)
376 smart00010 small_GTPase Small 98.2 1.5E-06 3.2E-11 69.3 4.9 114 117-272 2-115 (124)
377 PRK00098 GTPase RsgA; Reviewed 98.2 2.4E-06 5.2E-11 79.5 6.7 57 116-175 165-228 (298)
378 KOG0459 Polypeptide release fa 98.2 2.7E-06 5.8E-11 79.7 6.7 155 112-276 76-279 (501)
379 cd01854 YjeQ_engC YjeQ/EngC. 98.2 4.3E-06 9.2E-11 77.4 8.0 57 116-175 162-225 (287)
380 PRK14974 cell division protein 98.2 6E-06 1.3E-10 77.7 9.0 149 114-275 139-322 (336)
381 PRK13796 GTPase YqeH; Provisio 98.2 1.6E-05 3.4E-10 76.2 11.7 90 189-282 62-158 (365)
382 PF05783 DLIC: Dynein light in 98.2 4.8E-05 1E-09 74.7 14.5 62 226-288 196-269 (472)
383 PRK14722 flhF flagellar biosyn 98.1 2E-05 4.3E-10 75.0 11.0 122 114-240 136-295 (374)
384 PRK12288 GTPase RsgA; Reviewed 98.1 1.8E-05 3.9E-10 75.0 10.5 85 193-282 118-207 (347)
385 KOG1707 Predicted Ras related/ 98.1 3.3E-05 7.1E-10 75.6 12.2 156 115-284 425-584 (625)
386 KOG2485 Conserved ATP/GTP bind 98.1 6E-06 1.3E-10 75.1 6.2 64 115-178 143-211 (335)
387 TIGR02475 CobW cobalamin biosy 98.1 6E-05 1.3E-09 71.4 12.6 154 115-276 4-223 (341)
388 KOG1534 Putative transcription 98.0 1.3E-05 2.9E-10 68.9 6.9 76 164-241 99-179 (273)
389 PRK11537 putative GTP-binding 98.0 6.8E-05 1.5E-09 70.3 12.4 142 115-264 4-186 (318)
390 KOG0469 Elongation factor 2 [T 98.0 6.5E-06 1.4E-10 79.0 5.5 112 117-239 21-163 (842)
391 PF09547 Spore_IV_A: Stage IV 98.0 0.00028 6.2E-09 67.2 16.2 222 117-342 19-312 (492)
392 KOG0447 Dynamin-like GTP bindi 98.0 0.00014 3.1E-09 70.6 14.4 126 113-240 306-493 (980)
393 KOG2743 Cobalamin synthesis pr 98.0 2.1E-05 4.6E-10 71.1 8.2 144 109-255 51-240 (391)
394 PRK01889 GTPase RsgA; Reviewed 98.0 3.1E-05 6.8E-10 73.8 9.9 83 193-279 110-193 (356)
395 PF00448 SRP54: SRP54-type pro 98.0 6E-05 1.3E-09 65.7 10.1 117 117-240 3-154 (196)
396 cd04178 Nucleostemin_like Nucl 98.0 2.6E-05 5.6E-10 66.6 7.4 56 197-254 1-58 (172)
397 cd03114 ArgK-like The function 97.9 4.6E-05 1E-09 63.4 8.5 58 162-237 91-148 (148)
398 PRK12727 flagellar biosynthesi 97.9 0.00012 2.5E-09 72.3 11.9 144 114-271 349-523 (559)
399 cd03115 SRP The signal recogni 97.9 0.00029 6.4E-09 59.9 12.7 73 162-241 82-154 (173)
400 PRK11889 flhF flagellar biosyn 97.9 3.6E-05 7.7E-10 73.3 7.5 119 115-240 241-391 (436)
401 KOG3859 Septins (P-loop GTPase 97.8 8.2E-05 1.8E-09 66.7 8.7 129 117-248 44-198 (406)
402 TIGR03348 VI_IcmF type VI secr 97.8 7.1E-05 1.5E-09 81.8 9.3 123 114-241 110-258 (1169)
403 COG1419 FlhF Flagellar GTP-bin 97.8 6.3E-05 1.4E-09 71.4 7.6 118 115-240 203-352 (407)
404 PRK12726 flagellar biosynthesi 97.8 0.00026 5.6E-09 67.2 11.6 120 114-240 205-356 (407)
405 PRK12723 flagellar biosynthesi 97.8 0.00033 7.3E-09 67.2 12.6 121 114-240 173-326 (388)
406 PRK12724 flagellar biosynthesi 97.8 0.00017 3.8E-09 69.4 10.2 120 115-240 223-373 (432)
407 PRK06995 flhF flagellar biosyn 97.8 0.00019 4E-09 70.7 10.6 147 115-274 256-434 (484)
408 PRK14721 flhF flagellar biosyn 97.7 0.00011 2.4E-09 71.1 8.5 120 114-240 190-340 (420)
409 KOG0082 G-protein alpha subuni 97.7 0.00053 1.1E-08 64.4 12.5 74 157-239 189-275 (354)
410 PRK13695 putative NTPase; Prov 97.7 0.002 4.4E-08 54.8 14.7 88 181-283 82-173 (174)
411 PRK05703 flhF flagellar biosyn 97.7 0.00016 3.4E-09 70.6 8.4 119 116-240 222-371 (424)
412 KOG1533 Predicted GTPase [Gene 97.7 4.2E-05 9.2E-10 67.0 3.9 75 164-240 98-177 (290)
413 PRK00771 signal recognition pa 97.6 0.00051 1.1E-08 67.0 11.5 119 114-240 94-246 (437)
414 cd02038 FleN-like FleN is a me 97.6 0.0011 2.3E-08 54.5 11.2 100 120-239 5-110 (139)
415 COG3640 CooC CO dehydrogenase 97.6 0.00031 6.7E-09 61.8 7.7 45 193-239 153-198 (255)
416 COG1618 Predicted nucleotide k 97.5 0.0054 1.2E-07 51.1 14.3 148 116-284 6-177 (179)
417 smart00275 G_alpha G protein a 97.5 0.00096 2.1E-08 63.3 11.2 75 156-239 177-264 (342)
418 PRK06731 flhF flagellar biosyn 97.5 0.001 2.2E-08 60.8 10.9 119 115-240 75-225 (270)
419 KOG3887 Predicted small GTPase 97.5 0.00049 1.1E-08 60.6 8.3 116 116-241 28-150 (347)
420 KOG2484 GTPase [General functi 97.5 0.00058 1.3E-08 64.3 9.2 75 183-257 134-208 (435)
421 PF06858 NOG1: Nucleolar GTP-b 97.5 0.00039 8.4E-09 47.3 5.6 44 193-237 11-58 (58)
422 TIGR00959 ffh signal recogniti 97.4 0.0023 4.9E-08 62.4 12.9 72 161-239 181-252 (428)
423 PRK14723 flhF flagellar biosyn 97.4 0.00042 9.1E-09 71.5 7.7 122 115-240 185-337 (767)
424 cd03111 CpaE_like This protein 97.4 0.0017 3.6E-08 50.7 9.3 95 118-235 2-106 (106)
425 PRK10867 signal recognition pa 97.4 0.0019 4.2E-08 62.9 11.5 118 115-239 100-253 (433)
426 KOG1424 Predicted GTP-binding 97.3 0.00073 1.6E-08 65.5 7.8 81 185-267 164-244 (562)
427 COG0552 FtsY Signal recognitio 97.2 0.00062 1.3E-08 63.1 5.7 149 113-276 137-328 (340)
428 PRK01889 GTPase RsgA; Reviewed 97.2 0.00031 6.8E-09 67.0 3.4 56 117-175 197-259 (356)
429 COG1161 Predicted GTPases [Gen 97.1 0.0024 5.2E-08 60.1 8.9 86 186-276 25-110 (322)
430 cd02042 ParA ParA and ParB of 97.1 0.0044 9.6E-08 47.8 9.0 66 118-208 2-74 (104)
431 COG1162 Predicted GTPases [Gen 97.1 0.0039 8.5E-08 57.3 9.5 85 194-282 78-166 (301)
432 cd02036 MinD Bacterial cell di 97.1 0.014 3E-07 49.5 12.5 111 118-240 2-128 (179)
433 KOG2423 Nucleolar GTPase [Gene 97.1 0.0044 9.5E-08 58.5 9.8 96 184-280 202-297 (572)
434 COG3523 IcmF Type VI protein s 97.0 0.0012 2.7E-08 70.8 6.5 119 117-241 127-271 (1188)
435 cd01983 Fer4_NifH The Fer4_Nif 97.0 0.0074 1.6E-07 45.2 9.2 71 118-209 2-72 (99)
436 KOG0780 Signal recognition par 96.9 0.007 1.5E-07 57.0 9.5 92 115-209 101-227 (483)
437 KOG0705 GTPase-activating prot 96.8 0.0035 7.7E-08 61.3 7.3 151 116-282 31-188 (749)
438 PF00004 AAA: ATPase family as 96.6 0.0091 2E-07 47.7 7.2 21 118-138 1-21 (132)
439 PRK14737 gmk guanylate kinase; 96.5 0.0018 3.9E-08 55.9 2.9 41 116-156 5-45 (186)
440 PRK14738 gmk guanylate kinase; 96.4 0.0028 6E-08 55.7 3.2 38 114-151 12-49 (206)
441 COG1116 TauB ABC-type nitrate/ 96.4 0.0027 6E-08 56.6 3.1 23 117-139 31-53 (248)
442 PF05621 TniB: Bacterial TniB 96.3 0.014 3E-07 53.9 7.6 111 111-235 57-189 (302)
443 KOG0446 Vacuolar sorting prote 96.3 0.0027 5.9E-08 65.0 3.0 124 114-240 28-213 (657)
444 PF07015 VirC1: VirC1 protein; 96.3 0.02 4.4E-07 50.7 8.0 101 162-276 83-187 (231)
445 PF13207 AAA_17: AAA domain; P 96.3 0.0036 7.7E-08 49.6 3.0 22 117-138 1-22 (121)
446 PF00005 ABC_tran: ABC transpo 96.2 0.0041 9E-08 50.4 3.2 24 117-140 13-36 (137)
447 cd02037 MRP-like MRP (Multiple 96.2 0.038 8.2E-07 46.7 9.1 104 122-238 7-133 (169)
448 COG0194 Gmk Guanylate kinase [ 96.2 0.0026 5.6E-08 54.3 1.8 41 117-158 6-46 (191)
449 PF13555 AAA_29: P-loop contai 96.1 0.005 1.1E-07 42.9 2.8 20 117-136 25-44 (62)
450 COG1136 SalX ABC-type antimicr 96.1 0.0043 9.4E-08 54.9 2.9 23 117-139 33-55 (226)
451 COG1341 Predicted GTPase or GT 96.1 0.028 6E-07 53.6 8.4 24 113-136 71-94 (398)
452 COG0541 Ffh Signal recognition 96.1 0.046 9.9E-07 52.6 9.9 92 114-210 99-227 (451)
453 PF08433 KTI12: Chromatin asso 96.1 0.13 2.8E-06 47.1 12.5 150 117-282 3-173 (270)
454 TIGR03263 guanyl_kin guanylate 96.0 0.0061 1.3E-07 52.0 3.6 23 117-139 3-25 (180)
455 PRK13849 putative crown gall t 96.0 0.038 8.3E-07 49.4 8.6 67 161-238 82-152 (231)
456 cd00071 GMPK Guanosine monopho 96.0 0.0061 1.3E-07 49.9 3.2 21 118-138 2-22 (137)
457 cd03110 Fer4_NifH_child This p 95.9 0.028 6E-07 47.9 7.1 67 161-240 91-157 (179)
458 COG3840 ThiQ ABC-type thiamine 95.9 0.0061 1.3E-07 51.9 2.8 22 117-138 27-48 (231)
459 TIGR03574 selen_PSTK L-seryl-t 95.9 0.22 4.8E-06 44.9 13.3 20 118-137 2-21 (249)
460 TIGR01969 minD_arch cell divis 95.9 0.18 3.8E-06 45.2 12.6 65 162-239 108-173 (251)
461 PHA02518 ParA-like protein; Pr 95.9 0.11 2.3E-06 45.3 10.8 66 162-239 76-146 (211)
462 cd00009 AAA The AAA+ (ATPases 95.9 0.062 1.3E-06 43.0 8.7 24 116-139 20-43 (151)
463 cd02032 Bchl_like This family 95.8 0.084 1.8E-06 48.1 10.3 19 117-135 2-20 (267)
464 PRK07261 topology modulation p 95.8 0.0073 1.6E-07 51.4 3.0 21 117-137 2-22 (171)
465 PF13521 AAA_28: AAA domain; P 95.8 0.0053 1.2E-07 51.6 2.0 22 117-138 1-22 (163)
466 cd02019 NK Nucleoside/nucleoti 95.8 0.0088 1.9E-07 42.7 2.8 21 118-138 2-22 (69)
467 COG1222 RPT1 ATP-dependent 26S 95.7 0.05 1.1E-06 51.1 8.1 101 117-242 187-306 (406)
468 PRK08118 topology modulation p 95.7 0.0091 2E-07 50.6 3.0 22 117-138 3-24 (167)
469 KOG0781 Signal recognition par 95.6 0.017 3.6E-07 55.9 5.0 124 113-241 376-545 (587)
470 PRK00300 gmk guanylate kinase; 95.6 0.012 2.7E-07 51.2 3.9 23 117-139 7-29 (205)
471 COG0563 Adk Adenylate kinase a 95.6 0.0093 2E-07 51.1 3.0 22 117-138 2-23 (178)
472 cd03222 ABC_RNaseL_inhibitor T 95.6 0.0089 1.9E-07 51.2 2.9 23 117-139 27-49 (177)
473 COG1126 GlnQ ABC-type polar am 95.6 0.01 2.2E-07 51.9 3.1 26 114-139 27-52 (240)
474 TIGR00235 udk uridine kinase. 95.6 0.0094 2E-07 52.3 3.0 25 114-138 5-29 (207)
475 cd03225 ABC_cobalt_CbiO_domain 95.6 0.0099 2.1E-07 52.2 3.1 23 117-139 29-51 (211)
476 PF13671 AAA_33: AAA domain; P 95.6 0.0096 2.1E-07 48.5 2.8 20 118-137 2-21 (143)
477 smart00382 AAA ATPases associa 95.6 0.012 2.6E-07 46.8 3.3 24 116-139 3-26 (148)
478 cd03261 ABC_Org_Solvent_Resist 95.6 0.01 2.2E-07 53.0 3.2 23 117-139 28-50 (235)
479 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.6 0.01 2.3E-07 52.3 3.2 24 116-139 31-54 (218)
480 KOG0066 eIF2-interacting prote 95.6 0.11 2.3E-06 50.2 9.9 24 115-138 613-636 (807)
481 TIGR01166 cbiO cobalt transpor 95.6 0.011 2.3E-07 51.1 3.2 23 117-139 20-42 (190)
482 PF03205 MobB: Molybdopterin g 95.5 0.011 2.5E-07 48.5 3.1 22 116-137 1-22 (140)
483 TIGR00960 3a0501s02 Type II (G 95.5 0.011 2.4E-07 52.1 3.1 24 116-139 30-53 (216)
484 PRK10751 molybdopterin-guanine 95.5 0.013 2.8E-07 49.9 3.4 25 114-138 5-29 (173)
485 PRK08233 hypothetical protein; 95.5 0.012 2.7E-07 50.0 3.3 24 115-138 3-26 (182)
486 PRK08181 transposase; Validate 95.5 0.022 4.8E-07 52.1 5.0 21 117-137 108-128 (269)
487 cd03238 ABC_UvrA The excision 95.5 0.011 2.5E-07 50.5 3.0 22 116-137 22-43 (176)
488 cd03226 ABC_cobalt_CbiO_domain 95.5 0.012 2.5E-07 51.5 3.1 23 117-139 28-50 (205)
489 COG1120 FepC ABC-type cobalami 95.5 0.013 2.8E-07 53.0 3.4 23 115-137 28-50 (258)
490 TIGR03608 L_ocin_972_ABC putat 95.5 0.012 2.6E-07 51.4 3.1 23 117-139 26-48 (206)
491 TIGR02673 FtsE cell division A 95.5 0.012 2.6E-07 51.8 3.2 24 116-139 29-52 (214)
492 cd01130 VirB11-like_ATPase Typ 95.5 0.013 2.7E-07 50.6 3.2 24 115-138 25-48 (186)
493 PRK05480 uridine/cytidine kina 95.4 0.012 2.6E-07 51.6 3.1 25 114-138 5-29 (209)
494 cd03265 ABC_DrrA DrrA is the A 95.4 0.012 2.6E-07 52.0 3.2 22 117-138 28-49 (220)
495 cd03264 ABC_drug_resistance_li 95.4 0.012 2.5E-07 51.8 2.9 23 117-139 27-49 (211)
496 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.014 2.9E-07 48.2 3.1 23 117-139 28-50 (144)
497 PF13238 AAA_18: AAA domain; P 95.4 0.012 2.7E-07 46.7 2.8 21 118-138 1-21 (129)
498 PRK04195 replication factor C 95.4 0.23 5E-06 49.5 12.3 23 116-138 40-62 (482)
499 cd03259 ABC_Carb_Solutes_like 95.4 0.013 2.9E-07 51.5 3.2 23 117-139 28-50 (213)
500 cd03229 ABC_Class3 This class 95.4 0.014 3E-07 49.9 3.2 23 117-139 28-50 (178)
No 1
>COG1159 Era GTPase [General function prediction only]
Probab=100.00 E-value=1.5e-41 Score=303.01 Aligned_cols=229 Identities=41% Similarity=0.653 Sum_probs=211.5
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
..+++.|+|+|.||||||||+|+++|.+.+++++.+.||+..+.+++..+..++.++||||+.. +.+.+...+.+.+..
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~-pk~~l~~~m~~~a~~ 81 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHK-PKHALGELMNKAARS 81 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCC-cchHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999999999999999955 478899999999999
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh-HHHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
.+..+|+++||+|++++....++++.+.++. .+.|+++++||+|...... +......+.....+..++++||++|.|
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n 159 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDN 159 (298)
T ss_pred HhccCcEEEEEEeccccCCccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCC
Confidence 9999999999999999888888888888877 6789999999999988766 566777777778888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcccCCCchHHHHHHHHHHHHHhhccCCCCceEEEEeeEEEec-cceEEEeeec
Q 018949 271 VEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTFQHW-LIFVEFNAFL 343 (348)
Q Consensus 271 i~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~~eip~~~~~~~~~~~~~-~~~~~~~~~~ 343 (348)
++.|.+.+...+++++++||.+.+++.+.+|+++|++||+++..+++|+||+..|.++.|.++ .+-+++++..
T Consensus 160 ~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~I 233 (298)
T COG1159 160 VDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHATI 233 (298)
T ss_pred HHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999994 6777777643
No 2
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=100.00 E-value=5.7e-37 Score=281.16 Aligned_cols=221 Identities=38% Similarity=0.541 Sum_probs=186.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
++|+++|+||||||||+|+|++.+...+++.++||+....++...++.++.+|||||+... ...+...+...+..++..
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~-~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK-KHSLNRLMMKEARSAIGG 79 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC-cchHHHHHHHHHHHHHhh
Confidence 3799999999999999999999999889999999999888888777788999999998543 344555566677788899
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
+|++++|+|++...... ..+...+.. .+.|+++|+||+|+............+.......+++++||++|.|+++|+
T Consensus 80 aDvvl~VvD~~~~~~~~-~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~ 156 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG-EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLA 156 (270)
T ss_pred CCEEEEEEECCCCCchH-HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence 99999999998765443 455555555 678999999999998655554445555555555589999999999999999
Q ss_pred HHHHHhCCCCCCCCCCcccCCCchHHHHHHHHHHHHHhhccCCCCceEEEEeeEEEecc-ceEEEe
Q 018949 276 DWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTFQHWL-IFVEFN 340 (348)
Q Consensus 276 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~~eip~~~~~~~~~~~~~~-~~~~~~ 340 (348)
+++.+.++..+|.||.+..++.+.+++++|++||+++..+++|+||++.+.++.|..+. ..++|.
T Consensus 157 ~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~ 222 (270)
T TIGR00436 157 AFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIH 222 (270)
T ss_pred HHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEECCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999754 344444
No 3
>PRK15494 era GTPase Era; Provisional
Probab=100.00 E-value=1.6e-36 Score=285.87 Aligned_cols=225 Identities=32% Similarity=0.499 Sum_probs=189.4
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+..+|+++|.+|||||||+|+|++.++..+++.+++|+....+.+..++.++.+|||||+.+ .+..+...+.+.+..+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~-~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFE-PKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCC-CcccHHHHHHHHHHHH
Confidence 356699999999999999999999999988889999999888888888888999999999743 3455666666777777
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
+..||++++|+|++.+.......+...++. .+.|.++|+||+|+.+. ........+.......+++++||++|.|++
T Consensus 129 l~~aDvil~VvD~~~s~~~~~~~il~~l~~--~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~~~i~~iSAktg~gv~ 205 (339)
T PRK15494 129 LHSADLVLLIIDSLKSFDDITHNILDKLRS--LNIVPIFLLNKIDIESK-YLNDIKAFLTENHPDSLLFPISALSGKNID 205 (339)
T ss_pred hhhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCCcEEEEEeccCccCHH
Confidence 899999999999988777766666666555 56788999999999754 233344444444444689999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCcccCCCchHHHHHHHHHHHHHhhccCCCCceEEEEeeEEEecc-ceEEEee
Q 018949 273 DIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTFQHWL-IFVEFNA 341 (348)
Q Consensus 273 eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~~eip~~~~~~~~~~~~~~-~~~~~~~ 341 (348)
+|+++|.+.++.++|+||.+..++.+.+++++|++||+++..+++|+||++.|.++.|.++. ..++|++
T Consensus 206 eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~ 275 (339)
T PRK15494 206 GLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQ 275 (339)
T ss_pred HHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999854 4455543
No 4
>PRK00089 era GTPase Era; Reviewed
Probab=100.00 E-value=3.6e-35 Score=272.39 Aligned_cols=227 Identities=42% Similarity=0.656 Sum_probs=195.6
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+.+.|+++|.||||||||+|+|+|.+...+++.+.||+....++...++.++.++||||+.+. ...+...+...+...
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~-~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKP-KRALNRAMNKAAWSS 81 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCc-hhHHHHHHHHHHHHH
Confidence 4778999999999999999999999999889999999999988888777789999999998543 344556666677778
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC-ChhhHHHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
+..+|++++|+|++++.......+...+.. .+.|+++|+||+|+. ...........+....+..+++++||++|.|+
T Consensus 82 ~~~~D~il~vvd~~~~~~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv 159 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNV 159 (292)
T ss_pred HhcCCEEEEEEeCCCCCChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCH
Confidence 899999999999988666666666666654 578999999999998 44556666666766666778999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCcccCCCchHHHHHHHHHHHHHhhccCCCCceEEEEeeEEEeccceEEEeeec
Q 018949 272 EDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTFQHWLIFVEFNAFL 343 (348)
Q Consensus 272 ~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~~eip~~~~~~~~~~~~~~~~~~~~~~~ 343 (348)
++|++++.+.++..++.||.+..++.+.++++.|++||+++..+++|+||++.|.++.|.++ ..++|++.+
T Consensus 160 ~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~-~~~~i~~~i 230 (292)
T PRK00089 160 DELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFEER-GLVRIEATI 230 (292)
T ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEEEC-CeEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999986 555565543
No 5
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-33 Score=246.58 Aligned_cols=227 Identities=42% Similarity=0.681 Sum_probs=185.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh---hhhHHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI---HMLDSMMMKNV 189 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~---~~l~~~~~~~~ 189 (348)
.+...|+++|.||||||||.|.++|.++++++....||++.+.+++..+..+++++||||++.... +.+...+.+..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 467799999999999999999999999999999999999999999999999999999999976432 33444455677
Q ss_pred HhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-----------------HHHHHHH
Q 018949 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-----------------KKLEWYE 252 (348)
Q Consensus 190 ~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-----------------~~~~~~~ 252 (348)
+.++..||++++|+|+++........++..+... ..+|-|+|+||+|......+. +....+.
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~ 228 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFT 228 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhc
Confidence 8889999999999999865544444444444443 678999999999987644221 0111111
Q ss_pred h------------cCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCchHHHHHHHHHHHHHhhccCCCC
Q 018949 253 K------------FTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVP 320 (348)
Q Consensus 253 ~------------~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~~eip 320 (348)
. ..++..+|++||++|+|+++|.++|...++.++|.|+.+..++.+.++++.|.+|+++++.+++|+|
T Consensus 229 ~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd~~pqEVP 308 (379)
T KOG1423|consen 229 DVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLDHLPQEVP 308 (379)
T ss_pred cCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHHHHHHHHhhCccccC
Confidence 1 1123468999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeeEEEeccc-eEEEe
Q 018949 321 YACQVCNLTFQHWLI-FVEFN 340 (348)
Q Consensus 321 ~~~~~~~~~~~~~~~-~~~~~ 340 (348)
|++++.+..|+++.. -+.|.
T Consensus 309 Y~lq~~i~~w~e~~~g~l~I~ 329 (379)
T KOG1423|consen 309 YNLQVRILSWKERPAGVLFIQ 329 (379)
T ss_pred cceEEEEEEeeecCCcEEEEE
Confidence 999999999999644 44443
No 6
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.96 E-value=2.6e-28 Score=233.13 Aligned_cols=234 Identities=20% Similarity=0.202 Sum_probs=173.3
Q ss_pred eEEEechhhhhHhhhhhhhhhhhhhHHhhhhhhhhccccCCCCccCCcCCccccccccCCCCCCCCCCChhhhhhccccC
Q 018949 30 GFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQREMDLDDGDEMEFDDASSFLSLSEKPDRNMASPDDYEIEEFDYAS 109 (348)
Q Consensus 30 ~~~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (348)
+++++.++..+.+..++.+...+.++++++.+... ++ ++
T Consensus 120 GG~gG~gn~~f~~~~~~~p~~~~~g~~g~~~~~~l---el-------------------------k~------------- 158 (390)
T PRK12298 120 GGWHGLGNTRFKSSVNRAPRQKTPGTPGEERELKL---EL-------------------------KL------------- 158 (390)
T ss_pred CCCCccchhhhccCccCCCcccCCCCCCceEEEEE---ee-------------------------ec-------------
Confidence 45667777788877777777766555555543222 10 00
Q ss_pred CCCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 110 ~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
-..|+|+|.||||||||+|+|++.+. .++++|+||+....+++...+ ..+.++||||+...... ...+...
T Consensus 159 -----iadValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~--~~~Lg~~ 230 (390)
T PRK12298 159 -----LADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASE--GAGLGIR 230 (390)
T ss_pred -----cccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccc--hhhHHHH
Confidence 11599999999999999999999886 579999999999999988764 46999999998653321 1112233
Q ss_pred HHhhccCccEEEEEecCCC---C-CchHHHHHHHhccccc---CCCCEEEEEeccCCCChhhHHHHHHHHHhcCCC-CeE
Q 018949 189 VRSAGINADCIVVLVDACK---A-PERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV-DEV 260 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~---~-~~~~~~~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~i 260 (348)
+.+++.++|++++|+|++. . .......+.+.+.... .++|+++|+||+|+.....+......+....+. .++
T Consensus 231 ~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~V 310 (390)
T PRK12298 231 FLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPV 310 (390)
T ss_pred HHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCE
Confidence 4457899999999999872 1 2222233333333321 368999999999998766555555555444333 368
Q ss_pred EEecCCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCchHHHHHHHHHHHHH
Q 018949 261 IPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIF 312 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~ 312 (348)
+++||+++.|+++|++.|.+.++..+++||.+..++.+.+++++|++||++.
T Consensus 311 i~ISA~tg~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE~~~ 362 (390)
T PRK12298 311 YLISAASGLGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLE 362 (390)
T ss_pred EEEECCCCcCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999985
No 7
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.95 E-value=2e-27 Score=224.17 Aligned_cols=211 Identities=27% Similarity=0.317 Sum_probs=160.9
Q ss_pred hhhhhccccCCCCcc-CCcCCccccccccCCCC-CCCCCCChhhhhhccccCCCCCCccEEEEEcCCCCChHHHHHHHhC
Q 018949 60 LWSNQREMDLDDGDE-MEFDDASSFLSLSEKPD-RNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 60 ~~~~~~e~~~d~~e~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
.....+|+.+||.|+ .+....+.+....+... ...+.+.....+... ....+|+|+|.||||||||+|+|++
T Consensus 166 ~~~a~vEa~IDfpeedi~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~il------r~G~kvvIiG~PNvGKSSLLNaL~~ 239 (454)
T COG0486 166 ELLAQVEANIDFPEEDIEELVLEKIREKLEELIAELDELLATAKQGKIL------REGLKVVIIGRPNVGKSSLLNALLG 239 (454)
T ss_pred HHHHHheEeCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh------hcCceEEEECCCCCcHHHHHHHHhc
Confidence 456788999999876 44443333333222211 112222222222222 1344899999999999999999999
Q ss_pred CceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHH
Q 018949 138 QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILE 217 (348)
Q Consensus 138 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~ 217 (348)
.+.++|++.||||++.....++.+|+++.++||+|+. +..+.+++.+.++.+..+..||+++||+|++.+....+..+.
T Consensus 240 ~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiR-et~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~ 318 (454)
T COG0486 240 RDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIR-ETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALI 318 (454)
T ss_pred CCceEecCCCCCccceEEEEEEECCEEEEEEecCCcc-cCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHH
Confidence 9999999999999999999999999999999999996 567889999999999999999999999999987655555555
Q ss_pred HhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Q 018949 218 EGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 218 ~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~ 285 (348)
. ... .++|+++|+||+|+......... ......+++.+||++|+|++.|.+.|.+.+...
T Consensus 319 ~-~~~--~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 319 E-LLP--KKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred H-hcc--cCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 5 222 67999999999999976553222 222233689999999999999999999988664
No 8
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.94 E-value=1.2e-25 Score=211.47 Aligned_cols=162 Identities=34% Similarity=0.489 Sum_probs=143.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+.|+|+|.||||||||.|+|++.+.+++++.||+|++.......+.+..+.++||+|+.....+.+...+.+++..++..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999999999996555567888899999999999
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
||+++||+|+..+.+..++.+.+.++. .++|+|+|+||+|-...... ...+. ..++..++++||..|.|+.+|+
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~--~~kpviLvvNK~D~~~~e~~---~~efy-slG~g~~~~ISA~Hg~Gi~dLl 157 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRR--SKKPVILVVNKIDNLKAEEL---AYEFY-SLGFGEPVPISAEHGRGIGDLL 157 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEEcccCchhhhh---HHHHH-hcCCCCceEeehhhccCHHHHH
Confidence 999999999999999999999999986 78999999999998743321 12222 2455678999999999999999
Q ss_pred HHHHHhCC
Q 018949 276 DWILTKLP 283 (348)
Q Consensus 276 ~~i~~~l~ 283 (348)
+.+.+.++
T Consensus 158 d~v~~~l~ 165 (444)
T COG1160 158 DAVLELLP 165 (444)
T ss_pred HHHHhhcC
Confidence 99999985
No 9
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=4.1e-25 Score=183.98 Aligned_cols=155 Identities=34% Similarity=0.426 Sum_probs=112.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.||||||||+|+|+|.+.. ++++|++|.....+.+...+..+.++|+||+..-...+........+.. ....
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~-v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~-~~~~ 79 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQK-VGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLL-SEKP 79 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEE-EEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHH-HTSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCce-ecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHh-hcCC
Confidence 7999999999999999999999955 7999999999999999988899999999997554333333333222222 3689
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHH
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
|++++|+|+++.... ..+...+.+ .++|+++|+||+|......+.-....+.+..+. |++++||++++|+++|++
T Consensus 80 D~ii~VvDa~~l~r~--l~l~~ql~e--~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~-pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 80 DLIIVVVDATNLERN--LYLTLQLLE--LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGV-PVIPVSARTGEGIDELKD 154 (156)
T ss_dssp SEEEEEEEGGGHHHH--HHHHHHHHH--TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS--EEEEBTTTTBTHHHHHH
T ss_pred CEEEEECCCCCHHHH--HHHHHHHHH--cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCC-CEEEEEeCCCcCHHHHHh
Confidence 999999999863322 234444445 689999999999987544322123334444444 899999999999999998
Q ss_pred HH
Q 018949 277 WI 278 (348)
Q Consensus 277 ~i 278 (348)
.|
T Consensus 155 ~I 156 (156)
T PF02421_consen 155 AI 156 (156)
T ss_dssp HH
T ss_pred hC
Confidence 75
No 10
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=3.7e-24 Score=200.76 Aligned_cols=205 Identities=21% Similarity=0.253 Sum_probs=145.7
Q ss_pred eEEEechhhhhHhhhhhhhhhhhhhHHhhhhhhhhccccCCCCccCCcCCccccccccCCCCCCCCCCChhhhhhccccC
Q 018949 30 GFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQREMDLDDGDEMEFDDASSFLSLSEKPDRNMASPDDYEIEEFDYAS 109 (348)
Q Consensus 30 ~~~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (348)
+++++.++..+.+...+++...+.++++++.+... ++. +
T Consensus 119 gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~l---elk-------------------------~------------- 157 (335)
T PRK12299 119 GGKGGLGNAHFKSSTNRAPRYATPGEPGEERWLRL---ELK-------------------------L------------- 157 (335)
T ss_pred CCCCcCCchhhccccCCCCccccCCCCCcEEEEEE---EEc-------------------------c-------------
Confidence 45677778888888888888877777776653332 100 0
Q ss_pred CCCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC-CCeeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 110 ~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
-..|+|+|.||||||||+|+|++.+.. ++++++||..+..+.+.. ++..+.+|||||+.+.... ...+...
T Consensus 158 -----~adVglVG~PNaGKSTLln~ls~a~~~-va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~--~~gLg~~ 229 (335)
T PRK12299 158 -----LADVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASE--GAGLGHR 229 (335)
T ss_pred -----cCCEEEEcCCCCCHHHHHHHHHcCCCc-cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCc--cccHHHH
Confidence 116999999999999999999998765 689999999999998876 5678999999998653321 1122344
Q ss_pred HHhhccCccEEEEEecCCCCC-chHHHHHHHhccccc---CCCCEEEEEeccCCCChhhHHH-HHHHHHhcCCCCeEEEe
Q 018949 189 VRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPV 263 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~v 263 (348)
++++++.++++++|+|+++.. ......|...+.... .++|+++|+||+|+........ .........+ .+++++
T Consensus 230 flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~-~~i~~i 308 (335)
T PRK12299 230 FLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALG-GPVFLI 308 (335)
T ss_pred HHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcC-CCEEEE
Confidence 566778999999999998643 222233333333221 4689999999999976543322 2222222222 479999
Q ss_pred cCCCCCCHHHHHHHHHHhCCC
Q 018949 264 SAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 264 SA~~g~gi~eL~~~i~~~l~~ 284 (348)
||++++|+++|+++|.+.+..
T Consensus 309 SAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 309 SAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred EcCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999987754
No 11
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.91 E-value=3.5e-23 Score=194.99 Aligned_cols=168 Identities=25% Similarity=0.329 Sum_probs=140.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh--hhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~--~~~l~~~~~~~~~~ 191 (348)
...+|+|+|.||||||||+|+|+|....++++.+|||++.+...+..++..+.++||+|+.... ..+++..-...+..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 4579999999999999999999999999999999999999999999999999999999985421 12233334456667
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh--hhHHHHH---HHHHhcCCCCeEEEecCC
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKL---EWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~---~~~~~~~~~~~i~~vSA~ 266 (348)
++..+|++++|+|++.+...++..+..+... .+.+++||+||+|+... ...+... ...-.+.++.|++++||+
T Consensus 257 aI~~a~vvllviDa~~~~~~qD~~ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~ 334 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQDLRIAGLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISAL 334 (444)
T ss_pred HHhhcCEEEEEEECCCCchHHHHHHHHHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEec
Confidence 8899999999999999999999999998888 88999999999999875 2233333 333345567799999999
Q ss_pred CCCCHHHHHHHHHHhCC
Q 018949 267 YGHGVEDIRDWILTKLP 283 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~ 283 (348)
+|.|+..|++.+.+...
T Consensus 335 ~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 335 TGQGLDKLFEAIKEIYE 351 (444)
T ss_pred CCCChHHHHHHHHHHHH
Confidence 99999999999987654
No 12
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=1.2e-23 Score=204.53 Aligned_cols=204 Identities=21% Similarity=0.189 Sum_probs=147.5
Q ss_pred eEEEechhhhhHhhhhhhhhhhhhhHHhhhhhhhhccccCCCCccCCcCCccccccccCCCCCCCCCCChhhhhhccccC
Q 018949 30 GFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQREMDLDDGDEMEFDDASSFLSLSEKPDRNMASPDDYEIEEFDYAS 109 (348)
Q Consensus 30 ~~~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (348)
+++++.++.++.+...+++...+.++++++.+... |+.
T Consensus 120 GG~GG~Gn~~f~~~~~~~p~~~~~G~~Ge~~~~~l-eLk----------------------------------------- 157 (500)
T PRK12296 120 GGRGGLGNAALASKARKAPGFALLGEPGEERDLVL-ELK----------------------------------------- 157 (500)
T ss_pred cCCCcCCCcccCCccCCCCccccCCCCCceEEEEE-Eec-----------------------------------------
Confidence 56788888999999999998888777777654333 111
Q ss_pred CCCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHH
Q 018949 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (348)
Q Consensus 110 ~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~ 189 (348)
-...|+|+|.||||||||+|+|++.+.. ++++|+||..+..+++...+..+.++||||+...... ...+...+
T Consensus 158 ----~~adV~LVG~PNAGKSTLln~Ls~akpk-IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~--g~gLg~~f 230 (500)
T PRK12296 158 ----SVADVGLVGFPSAGKSSLISALSAAKPK-IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASE--GKGLGLDF 230 (500)
T ss_pred ----ccceEEEEEcCCCCHHHHHHHHhcCCcc-ccccCcccccceEEEEEECCeEEEEEECCCCccccch--hhHHHHHH
Confidence 0117999999999999999999998776 5889999999999999888889999999998643211 12223345
Q ss_pred HhhccCccEEEEEecCCCC------CchHH---HHHHHhccc--------ccCCCCEEEEEeccCCCChhhHHHHHH-HH
Q 018949 190 RSAGINADCIVVLVDACKA------PERID---EILEEGVGD--------HKDKLPILLVLNKKDLIKPGEIAKKLE-WY 251 (348)
Q Consensus 190 ~~~~~~ad~iv~VvD~~~~------~~~~~---~~~~~~~~~--------~~~~~p~ivv~NK~Dl~~~~~~~~~~~-~~ 251 (348)
++++..||++|+|+|++.. ..... ..+..+... ...++|+|||+||+|++...+..+... .+
T Consensus 231 LrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l 310 (500)
T PRK12296 231 LRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL 310 (500)
T ss_pred HHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH
Confidence 5677899999999999742 11221 122222210 014689999999999986554433322 23
Q ss_pred HhcCCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 252 EKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 252 ~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
... + .+++++||++++|+++|+.+|.+.+..
T Consensus 311 ~~~-g-~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 311 EAR-G-WPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred HHc-C-CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 322 3 489999999999999999999987754
No 13
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.91 E-value=1.4e-22 Score=170.48 Aligned_cols=165 Identities=42% Similarity=0.621 Sum_probs=129.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
..+|+++|.+|+|||||+|++++.........+.+++..........+..+.+|||||+.... ......+.......+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~-~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPK-KKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcch-HHHHHHHHHHHHHHHH
Confidence 458999999999999999999999887777777888887777777777889999999975432 2222334444556688
Q ss_pred CccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC-ChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
.+|++++|+|+++........+...+.. .+.|+++|+||+|+. ....+......+....+..+++++|++++.|+++
T Consensus 82 ~~d~i~~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 159 (168)
T cd04163 82 DVDLVLFVVDASEPIGEGDEFILELLKK--SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDE 159 (168)
T ss_pred hCCEEEEEEECCCccCchHHHHHHHHHH--hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHH
Confidence 9999999999998755555556555554 568999999999998 4555566666666666667899999999999999
Q ss_pred HHHHHHHhC
Q 018949 274 IRDWILTKL 282 (348)
Q Consensus 274 L~~~i~~~l 282 (348)
+++.|.+.+
T Consensus 160 l~~~l~~~~ 168 (168)
T cd04163 160 LLEEIVKYL 168 (168)
T ss_pred HHHHHHhhC
Confidence 999997653
No 14
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=1.2e-22 Score=170.10 Aligned_cols=157 Identities=35% Similarity=0.468 Sum_probs=120.7
Q ss_pred EEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccE
Q 018949 119 AVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198 (348)
Q Consensus 119 ~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~ 198 (348)
+++|.+|+|||||+|+|.+......+..+++|+..........+..+.+|||||+..... .+...+...+...+..+|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~-~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE-GISKEIREQAELAIEEADV 79 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh-HHHHHHHHHHHHHHHhCCE
Confidence 479999999999999999988666778888888877777777778999999999754322 2344444555666789999
Q ss_pred EEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHH
Q 018949 199 IVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWI 278 (348)
Q Consensus 199 iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i 278 (348)
+++|+|+.++.......+...++. .+.|+++|+||+|+...... ...+.. .+..+++++||++|.|++++++++
T Consensus 80 ii~v~d~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~---~~~~~~-~~~~~~~~~Sa~~~~gv~~l~~~l 153 (157)
T cd01894 80 ILFVVDGREGLTPADEEIAKYLRK--SKKPVILVVNKVDNIKEEDE---AAEFYS-LGFGEPIPISAEHGRGIGDLLDAI 153 (157)
T ss_pred EEEEEeccccCCccHHHHHHHHHh--cCCCEEEEEECcccCChHHH---HHHHHh-cCCCCeEEEecccCCCHHHHHHHH
Confidence 999999987765555556666655 57999999999999876543 122222 334478999999999999999999
Q ss_pred HHhC
Q 018949 279 LTKL 282 (348)
Q Consensus 279 ~~~l 282 (348)
.+.+
T Consensus 154 ~~~~ 157 (157)
T cd01894 154 LELL 157 (157)
T ss_pred HhhC
Confidence 8753
No 15
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.90 E-value=1.3e-22 Score=172.42 Aligned_cols=164 Identities=24% Similarity=0.364 Sum_probs=110.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
++|+++|++|+|||||+|++++..+. +...+++|..........++..+.+|||||+.+....................
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-cCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 37999999999999999999998764 45567777777666666677899999999974311100000000111111234
Q ss_pred ccEEEEEecCCCCCc---hHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 196 ADCIVVLVDACKAPE---RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 196 ad~iv~VvD~~~~~~---~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
+|++++|+|+++... .....+...++....+.|+++|+||+|+........ ...+... ...+++++||++|.|++
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~-~~~~~~~-~~~~~~~~Sa~~~~gi~ 157 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE-IEEEEEL-EGEEVLKISTLTEEGVD 157 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH-HHHhhhh-ccCceEEEEecccCCHH
Confidence 689999999986432 111223333333224799999999999987655443 2233332 34579999999999999
Q ss_pred HHHHHHHHhC
Q 018949 273 DIRDWILTKL 282 (348)
Q Consensus 273 eL~~~i~~~l 282 (348)
++++++.+.+
T Consensus 158 ~l~~~l~~~~ 167 (168)
T cd01897 158 EVKNKACELL 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 16
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=4.2e-23 Score=201.51 Aligned_cols=157 Identities=31% Similarity=0.383 Sum_probs=123.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
..+|+++|++|||||||+|+|++.+...+++.+++|++.....+..++.++.+|||||+.+ ....+.......+..++.
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~-~~~~ie~~gi~~~~~~~~ 293 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE-TDDEVEKIGIERSREAIE 293 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCC-CccHHHHHHHHHHHHHHH
Confidence 3589999999999999999999988777889999999988888888888999999999753 333344444555667789
Q ss_pred CccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHH
Q 018949 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL 274 (348)
.+|++++|+|++++.......++.. . .+.|+++|+||+|+....... .....+++++||++|.|+++|
T Consensus 294 ~aD~il~VvD~s~~~s~~~~~~l~~--~--~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI~~L 361 (449)
T PRK05291 294 EADLVLLVLDASEPLTEEDDEILEE--L--KDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGIDEL 361 (449)
T ss_pred hCCEEEEEecCCCCCChhHHHHHHh--c--CCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCHHHH
Confidence 9999999999987664333322222 2 678999999999997644322 122347899999999999999
Q ss_pred HHHHHHhCCC
Q 018949 275 RDWILTKLPL 284 (348)
Q Consensus 275 ~~~i~~~l~~ 284 (348)
+++|.+.+..
T Consensus 362 ~~~L~~~l~~ 371 (449)
T PRK05291 362 REAIKELAFG 371 (449)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 17
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.90 E-value=3.6e-23 Score=193.98 Aligned_cols=203 Identities=24% Similarity=0.321 Sum_probs=143.7
Q ss_pred eEEEechhhhhHhhhhhhhhhhhhhHHhhhhhhhhccccCCCCccCCcCCccccccccCCCCCCCCCCChhhhhhccccC
Q 018949 30 GFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQREMDLDDGDEMEFDDASSFLSLSEKPDRNMASPDDYEIEEFDYAS 109 (348)
Q Consensus 30 ~~~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (348)
+++++.++..+.+..++.+...+.++++++..... ++.
T Consensus 118 gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~l---elk--------------------------------------- 155 (329)
T TIGR02729 118 GGRGGLGNAHFKSSTNRAPRFATPGEPGEERWLRL---ELK--------------------------------------- 155 (329)
T ss_pred CCCCCCCcccccCccCCCCcccCCCCCCcEEEEEE---Eee---------------------------------------
Confidence 45667777788888888887766666665542222 100
Q ss_pred CCCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 110 ~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
--..|+|+|.||||||||+|+|.+.+.. +++++.||..+..+.+...+ ..+.+|||||+.+.... ...+...
T Consensus 156 ----~~adV~lvG~pnaGKSTLl~~lt~~~~~-va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~--~~gLg~~ 228 (329)
T TIGR02729 156 ----LLADVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASE--GAGLGHR 228 (329)
T ss_pred ----ccccEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcc--cccHHHH
Confidence 1116999999999999999999998765 68899999998888887765 88999999998643221 1112234
Q ss_pred HHhhccCccEEEEEecCCCC----CchHHHHHHHhcccc---cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEE
Q 018949 189 VRSAGINADCIVVLVDACKA----PERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVI 261 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~----~~~~~~~~~~~~~~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~ 261 (348)
+++++..||++++|+|+++. .......+.+.+... ..++|+++|+||+|+..........+.+....+ .+++
T Consensus 229 flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~-~~vi 307 (329)
T TIGR02729 229 FLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALG-KPVF 307 (329)
T ss_pred HHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcC-CcEE
Confidence 55667899999999999864 111222233322221 146899999999999876555555555554444 4799
Q ss_pred EecCCCCCCHHHHHHHHHHhC
Q 018949 262 PVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~l 282 (348)
++||++++|+++|+++|.+.+
T Consensus 308 ~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 308 PISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEEccCCcCHHHHHHHHHHHh
Confidence 999999999999999998765
No 18
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=5.5e-23 Score=197.57 Aligned_cols=205 Identities=23% Similarity=0.263 Sum_probs=144.4
Q ss_pred eEEEechhhhhHhhhhhhhhhhhhhHHhhhhhhhhccccCCCCccCCcCCccccccccCCCCCCCCCCChhhhhhccccC
Q 018949 30 GFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQREMDLDDGDEMEFDDASSFLSLSEKPDRNMASPDDYEIEEFDYAS 109 (348)
Q Consensus 30 ~~~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (348)
+++++.++..+.+...+++...+.+.++++.+... |+. +
T Consensus 119 GG~gG~gn~~F~~s~~~~p~~~~~G~~ge~~~~~l-elk---------------------------~------------- 157 (424)
T PRK12297 119 GGRGGRGNAHFATSTNQAPRIAENGEPGEERELRL-ELK---------------------------L------------- 157 (424)
T ss_pred CCCCCcCchhhcCCCCCCCCcCCCCCCCeEeEEEE-eec---------------------------c-------------
Confidence 45677778888888888887777666666543322 100 1
Q ss_pred CCCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 110 ~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
-..|+++|.||||||||+|+|++.+.. ++++|+||..+..+.+... +..+.+|||||+...... ...+...
T Consensus 158 -----~adVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~--~~gLg~~ 229 (424)
T PRK12297 158 -----LADVGLVGFPNVGKSTLLSVVSNAKPK-IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE--GVGLGHQ 229 (424)
T ss_pred -----cCcEEEEcCCCCCHHHHHHHHHcCCCc-cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc--cchHHHH
Confidence 116999999999999999999998866 5789999999988887766 688999999998653221 1223344
Q ss_pred HHhhccCccEEEEEecCCCC----CchHHHHHHHhccccc---CCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEE
Q 018949 189 VRSAGINADCIVVLVDACKA----PERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVI 261 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~----~~~~~~~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~ 261 (348)
+++++.+|+++|+|+|++.. .......+...+.... .++|++||+||+|+....+ ....+....+ .+++
T Consensus 230 fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e---~l~~l~~~l~-~~i~ 305 (424)
T PRK12297 230 FLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEE---NLEEFKEKLG-PKVF 305 (424)
T ss_pred HHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHH---HHHHHHHHhC-CcEE
Confidence 55667899999999999753 1122233333333321 4689999999999854322 2222333333 4799
Q ss_pred EecCCCCCCHHHHHHHHHHhCCCCCC
Q 018949 262 PVSAKYGHGVEDIRDWILTKLPLGPA 287 (348)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~l~~~~~ 287 (348)
++||++++|+++|+++|.+.+...+.
T Consensus 306 ~iSA~tgeGI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 306 PISALTGQGLDELLYAVAELLEETPE 331 (424)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999999988866543
No 19
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=6.6e-23 Score=199.14 Aligned_cols=204 Identities=25% Similarity=0.290 Sum_probs=137.2
Q ss_pred hhhhhccccCCCCccCCcCCccccccccCCCC-CCCCCCChhhhhhccccCCCCCCccEEEEEcCCCCChHHHHHHHhCC
Q 018949 60 LWSNQREMDLDDGDEMEFDDASSFLSLSEKPD-RNMASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 60 ~~~~~~e~~~d~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
...+.+|+.+||.||.+.. .++........ ....++.......+ ....+|+++|++|||||||+|+|++.
T Consensus 156 ~~~a~iea~iDf~ee~~~~--~~~~~~l~~~~~~l~~ll~~~~~~~~-------~~g~kVvIvG~~nvGKSSLiN~L~~~ 226 (442)
T TIGR00450 156 QLLAQVEVNIDYEEDDDEQ--DSLNQLLLSIIAELKDILNSYKLEKL-------DDGFKLAIVGSPNVGKSSLLNALLKQ 226 (442)
T ss_pred HHHHHeeEECCcCCCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHh-------hcCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3456889999998754322 22222111111 11112222211111 13458999999999999999999998
Q ss_pred ceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHH
Q 018949 139 KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEE 218 (348)
Q Consensus 139 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~ 218 (348)
....+++.+++|++.....+..++..+.+|||||+.+ ....+..........+++.+|++++|+|++++...... +..
T Consensus 227 ~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~-~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~ 304 (442)
T TIGR00450 227 DRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIRE-HADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LII 304 (442)
T ss_pred CCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCccc-chhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHH
Confidence 8777899999999998888888889999999999743 22333344445566788999999999999876644433 333
Q ss_pred hcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 219 GVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 219 ~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
.+.. .++|+++|+||+|+... +.. .+....+ .+++.+||++ .|++++++.+.+.+.
T Consensus 305 ~~~~--~~~piIlV~NK~Dl~~~-~~~----~~~~~~~-~~~~~vSak~-~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 305 DLNK--SKKPFILVLNKIDLKIN-SLE----FFVSSKV-LNSSNLSAKQ-LKIKALVDLLTQKIN 360 (442)
T ss_pred HHhh--CCCCEEEEEECccCCCc-chh----hhhhhcC-CceEEEEEec-CCHHHHHHHHHHHHH
Confidence 3333 57899999999999754 221 1222222 3689999998 588888877776553
No 20
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.89 E-value=8.1e-22 Score=175.32 Aligned_cols=194 Identities=16% Similarity=0.181 Sum_probs=130.4
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
....+|+++|.+|||||||+++++..++.. ..++.+.+..............+.+||||| +..+..+ ...
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~ 81 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG--QEKFGGL-------RDG 81 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCC--chhhhhh-------hHH
Confidence 345599999999999999999988776532 223333333333333344557899999999 4444333 234
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+++.+|++|+|+|.++.. .....|+..+ .....+.|+++|+||+|+.......... .+....+ .++++|||++|.
T Consensus 82 ~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i-~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~-~~~~e~SAk~~~ 158 (219)
T PLN03071 82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKN-LQYYEISAKSNY 158 (219)
T ss_pred HcccccEEEEEEeCCCHHHHHHHHHHHHHH-HHhCCCCcEEEEEEchhhhhccCCHHHH-HHHHhcC-CEEEEcCCCCCC
Confidence 578999999999998754 3333333333 2223679999999999986432112222 2222233 478999999999
Q ss_pred CHHHHHHHHHHhCC--------CCCCCCCCcccCCCchHHHHHHHHHHHHHhhccCC
Q 018949 270 GVEDIRDWILTKLP--------LGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNE 318 (348)
Q Consensus 270 gi~eL~~~i~~~l~--------~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~~e 318 (348)
|++++|.+|.+.+. ..++.++.+...+.+......+.++++....+..+
T Consensus 159 ~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (219)
T PLN03071 159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQPLPDD 215 (219)
T ss_pred CHHHHHHHHHHHHHcCcchhcccccccCCcccCCCHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999997764 33556666666777777777778888776655543
No 21
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.89 E-value=1.1e-21 Score=166.50 Aligned_cols=165 Identities=25% Similarity=0.294 Sum_probs=120.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh--hhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~--~~~l~~~~~~~~~~~ 192 (348)
..+|+++|.+|+|||||+|++++.........+++|.......+..++..+.+|||||+.+.. ...+...........
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 348999999999999999999998766667778888777666666677789999999975421 111222222233455
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh--hhHHHHHHHHHhcCC---CCeEEEecCCC
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWYEKFTD---VDEVIPVSAKY 267 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~~~~~~~---~~~i~~vSA~~ 267 (348)
+..+|++++|+|++++.......+...... .+.|+++|+||+|+... .........+....+ ..+++++||++
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLRIAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALT 159 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHHHHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccC
Confidence 789999999999988765554445544444 57899999999999865 334444444444332 35899999999
Q ss_pred CCCHHHHHHHHHHh
Q 018949 268 GHGVEDIRDWILTK 281 (348)
Q Consensus 268 g~gi~eL~~~i~~~ 281 (348)
+.|++++++++.+.
T Consensus 160 ~~~i~~~~~~l~~~ 173 (174)
T cd01895 160 GQGVDKLFDAIDEV 173 (174)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999998764
No 22
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.89 E-value=2.5e-22 Score=170.76 Aligned_cols=162 Identities=24% Similarity=0.272 Sum_probs=111.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCe-eEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
.|+++|.+|||||||+|+|.+... .++..+++|.....+.+..++. .+.+|||||+.+.... ...+...+...+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~~~~~~~~~~~ 78 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASE--GKGLGHRFLRHIER 78 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccc--cCCchHHHHHHHHh
Confidence 599999999999999999998765 3566677777766666666655 8999999997432111 01112233344568
Q ss_pred ccEEEEEecCCCC-C--chHHHHHHHhcccc---cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 196 ADCIVVLVDACKA-P--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 196 ad~iv~VvD~~~~-~--~~~~~~~~~~~~~~---~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+|++++|+|+++. . .... .+.+.+... ..++|+++|+||+|+.+..........+.......+++++||+++.
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 157 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYK-TIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGE 157 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHH-HHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCC
Confidence 9999999999876 2 2222 222222221 1468999999999997765554444443333223578999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++++++|.+.+
T Consensus 158 gi~~l~~~i~~~~ 170 (170)
T cd01898 158 GLDELLRKLAELL 170 (170)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998653
No 23
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=9.2e-22 Score=192.17 Aligned_cols=168 Identities=26% Similarity=0.294 Sum_probs=131.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh--hhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|+|||||+|+|++.....+++.+++|++.....+..++..+.+|||||+..... ..++.........
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 44689999999999999999999998877889999999988777777778899999999754221 1233333345566
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC-ChhhHHHHHHHHHhc---CCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~-~~~~~~~~~~~~~~~---~~~~~i~~vSA~~ 267 (348)
++..+|++|+|+|++++....+..+...+.. .++|+++|+||+|+. +..........+... ....+++++||++
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~ 328 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDLRIAGLILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALT 328 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHHHHHHHHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCC
Confidence 7899999999999998887777767666655 679999999999998 433344444444332 2446899999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 018949 268 GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (348)
|.|++++++++.+...
T Consensus 329 g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 329 GQGVDKLLDAIDEVYE 344 (429)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988654
No 24
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=5.1e-22 Score=195.68 Aligned_cols=162 Identities=30% Similarity=0.390 Sum_probs=128.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
++|+|+|.+|||||||+|+|++.....+.+.+++|++.........+..+.+|||||+.. ....+...+...+..++..
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~-~~~~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEP-DAKGLQASVAEQAEVAMRT 117 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCC-cchhHHHHHHHHHHHHHHh
Confidence 489999999999999999999988777889999999988888777888899999999742 2234555566667778899
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
||++|+|+|++++.......+...++. .++|+++|+||+|+...... ..... . .+....++|||++|.|+++|+
T Consensus 118 aD~il~VvD~~~~~s~~~~~i~~~l~~--~~~piilV~NK~Dl~~~~~~--~~~~~-~-~g~~~~~~iSA~~g~gi~eL~ 191 (472)
T PRK03003 118 ADAVLFVVDATVGATATDEAVARVLRR--SGKPVILAANKVDDERGEAD--AAALW-S-LGLGEPHPVSALHGRGVGDLL 191 (472)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCccchh--hHHHH-h-cCCCCeEEEEcCCCCCcHHHH
Confidence 999999999998876666667777765 68999999999998653211 11111 1 233345799999999999999
Q ss_pred HHHHHhCCC
Q 018949 276 DWILTKLPL 284 (348)
Q Consensus 276 ~~i~~~l~~ 284 (348)
++|.+.++.
T Consensus 192 ~~i~~~l~~ 200 (472)
T PRK03003 192 DAVLAALPE 200 (472)
T ss_pred HHHHhhccc
Confidence 999988865
No 25
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.88 E-value=9.1e-22 Score=186.06 Aligned_cols=158 Identities=28% Similarity=0.326 Sum_probs=115.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC-CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
++|+++|++|||||||+|+|++.+. .+++.+++|.++....+.. ++..+.+|||||+.......+...+ ..+...+.
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~-~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f-~~tle~~~ 267 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADV-YAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAF-RATLEEVR 267 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCce-eeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHH-HHHHHHHH
Confidence 5899999999999999999999884 4678889998887776665 5678999999997443223332333 33456688
Q ss_pred CccEEEEEecCCCCCchH-HHHHHHhccccc-CCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 195 NADCIVVLVDACKAPERI-DEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~~~-~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
.||++++|+|++++.... ...+...+...+ .+.|+++|+||+|+.+...+.. ... ...+++++||++|.|++
T Consensus 268 ~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~----~~~--~~~~~i~iSAktg~GI~ 341 (351)
T TIGR03156 268 EADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIER----LEE--GYPEAVFVSAKTGEGLD 341 (351)
T ss_pred hCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHH----HHh--CCCCEEEEEccCCCCHH
Confidence 999999999998765332 222233333321 4789999999999976443321 111 12368999999999999
Q ss_pred HHHHHHHHh
Q 018949 273 DIRDWILTK 281 (348)
Q Consensus 273 eL~~~i~~~ 281 (348)
+|+++|.+.
T Consensus 342 eL~~~I~~~ 350 (351)
T TIGR03156 342 LLLEAIAER 350 (351)
T ss_pred HHHHHHHhh
Confidence 999998764
No 26
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=9e-22 Score=193.92 Aligned_cols=169 Identities=24% Similarity=0.233 Sum_probs=125.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHH--HHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMM--KNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~--~~~~~ 191 (348)
...+|+++|.+|||||||+|+|++.....+++.+++|++.....+..++..+.+|||||+............. .....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 4569999999999999999999999877788999999988877777778889999999974321111111111 12334
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHH---hcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~---~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|++++.......+...+.. .++|+|+|+||+|+............+. ......+++++||++|
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g 367 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQRVLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTG 367 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCC
Confidence 5789999999999998876666555555554 6799999999999976432222222222 1224468999999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 018949 269 HGVEDIRDWILTKLPL 284 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (348)
.|++++++.+.+.+..
T Consensus 368 ~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 368 RAVDKLVPALETALES 383 (472)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987753
No 27
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=1.2e-21 Score=191.44 Aligned_cols=161 Identities=36% Similarity=0.454 Sum_probs=133.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.+|||||||+|+|++...+.+.+.+++|++.....+.+++..+.+|||||+.. ....+...+...+..++..+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~-~~~~~~~~~~~~~~~~~~~a 79 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEE-DDDGLDKQIREQAEIAIEEA 79 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCC-cchhHHHHHHHHHHHHHhhC
Confidence 48999999999999999999998878899999999988888888888999999999743 33445566667778889999
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHH
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
|++++|+|+..+....+..+..+++. .++|+++|+||+|+....... ..+. ..+..+++++||++|.|++++++
T Consensus 80 d~vl~vvD~~~~~~~~d~~i~~~l~~--~~~piilVvNK~D~~~~~~~~---~~~~-~lg~~~~~~vSa~~g~gv~~ll~ 153 (429)
T TIGR03594 80 DVILFVVDGREGLTPEDEEIAKWLRK--SGKPVILVANKIDGKKEDAVA---AEFY-SLGFGEPIPISAEHGRGIGDLLD 153 (429)
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHH--hCCCEEEEEECccCCcccccH---HHHH-hcCCCCeEEEeCCcCCChHHHHH
Confidence 99999999998888777777777776 689999999999987643211 1122 34555789999999999999999
Q ss_pred HHHHhCCC
Q 018949 277 WILTKLPL 284 (348)
Q Consensus 277 ~i~~~l~~ 284 (348)
.+.+.++.
T Consensus 154 ~i~~~l~~ 161 (429)
T TIGR03594 154 AILELLPE 161 (429)
T ss_pred HHHHhcCc
Confidence 99998865
No 28
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=2.8e-21 Score=189.02 Aligned_cols=168 Identities=25% Similarity=0.319 Sum_probs=132.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh--hhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~l~~~~~~~~~~ 191 (348)
...+|+++|++|+|||||+|++++.....+++.+++|++.....+..++..+.+|||||+..... ..++.........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~ 251 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLK 251 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHH
Confidence 45699999999999999999999998877899999999988877777888899999999744221 1233333344556
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g 268 (348)
++..+|++|+|+|++.+...++..+...+.. .++|+++|+||+|+.+..........+.. .....+++++||++|
T Consensus 252 ~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~ 329 (435)
T PRK00093 252 AIERADVVLLVIDATEGITEQDLRIAGLALE--AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTG 329 (435)
T ss_pred HHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCC
Confidence 7889999999999999887777777776665 67999999999999865444444333333 234568999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|++++++.+.+...
T Consensus 330 ~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 330 QGVDKLLEAIDEAYE 344 (435)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999887553
No 29
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.88 E-value=3.2e-21 Score=161.21 Aligned_cols=154 Identities=31% Similarity=0.445 Sum_probs=118.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|++|+|||||+|++.+.........+++|.......+...+..+.+|||||+.+.. ..+...........+..+
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~-~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETE-DEIEKIGIERAREAIEEA 81 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCc-chHHHHHHHHHHHHHhhC
Confidence 7999999999999999999998877677888888887776777777889999999975432 223333334455667899
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHH
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
|++++|+|++............. . .+.|+++|+||+|+...... .......+++++||+++.|++++++
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~--~--~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~l~~ 150 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL--P--ADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDELKE 150 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh--h--cCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHHHHH
Confidence 99999999997665444333322 2 67999999999999875543 1222345899999999999999999
Q ss_pred HHHHhC
Q 018949 277 WILTKL 282 (348)
Q Consensus 277 ~i~~~l 282 (348)
+|.+.+
T Consensus 151 ~l~~~~ 156 (157)
T cd04164 151 ALLELA 156 (157)
T ss_pred HHHHhh
Confidence 998754
No 30
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.88 E-value=3.9e-21 Score=162.11 Aligned_cols=154 Identities=21% Similarity=0.241 Sum_probs=102.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee--cCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.|+++|.+|||||||+|+|.+...... ...+++|.......+... +..+.+|||||+ ..+ ...+..++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~--~~~-------~~~~~~~~ 72 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH--EKF-------IKNMLAGA 72 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCCh--HHH-------HHHHHhhh
Confidence 589999999999999999997542211 223455655544444444 678999999994 222 23344557
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhH----HHHHHHHHhc-CCCCeEEEecCCCC
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI----AKKLEWYEKF-TDVDEVIPVSAKYG 268 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~----~~~~~~~~~~-~~~~~i~~vSA~~g 268 (348)
..+|++++|+|++++...........+... ...|+++|+||+|+...... .+....+... ....+++++||++|
T Consensus 73 ~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (164)
T cd04171 73 GGIDLVLLVVAADEGIMPQTREHLEILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTG 151 (164)
T ss_pred hcCCEEEEEEECCCCccHhHHHHHHHHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCC
Confidence 899999999999875533333333333331 22499999999999865322 2222333321 12358999999999
Q ss_pred CCHHHHHHHHHH
Q 018949 269 HGVEDIRDWILT 280 (348)
Q Consensus 269 ~gi~eL~~~i~~ 280 (348)
.|++++++.+.+
T Consensus 152 ~~v~~l~~~l~~ 163 (164)
T cd04171 152 EGIEELKEYLDE 163 (164)
T ss_pred cCHHHHHHHHhh
Confidence 999999998864
No 31
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.87 E-value=1.4e-20 Score=160.11 Aligned_cols=168 Identities=26% Similarity=0.350 Sum_probs=129.5
Q ss_pred CCCCccEEEEEcCCCCChHHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh-hhHHH---H
Q 018949 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDSM---M 185 (348)
Q Consensus 111 ~~~~~~~v~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-~l~~~---~ 185 (348)
|....+.|+++|.+|||||||||+|++.+ .+.++.+||.|+......+... +.++|.||++-.... ..... +
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence 44455689999999999999999999966 5778999999999887666544 899999998653211 12222 2
Q ss_pred HHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcC---CCCe--E
Q 018949 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT---DVDE--V 260 (348)
Q Consensus 186 ~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~--i 260 (348)
...++..-....++++++|+.+++...+..+.+++.. .++|++||+||+|..+..+.......+.... ..+. +
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~--~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~ 174 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE--LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWV 174 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceE
Confidence 3333333345788999999999999999999999988 8999999999999998777655555555322 2222 7
Q ss_pred EEecCCCCCCHHHHHHHHHHhCC
Q 018949 261 IPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
+.+|+.++.|+++|...|.+.+.
T Consensus 175 ~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 175 VLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred EEEecccccCHHHHHHHHHHHhh
Confidence 88999999999999999988764
No 32
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=3e-21 Score=168.07 Aligned_cols=165 Identities=21% Similarity=0.193 Sum_probs=109.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceE-EeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~-~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+|+++|.+|||||||++++.+..+.. ...+.++. .... ..+......+.+||||| +..+..+ ...++
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~~-------~~~~~ 71 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLN-GNFIATVGIDFRNKVVTVDGVKVKLQIWDTAG--QERFRSV-------THAYY 71 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCc-cCcCCcccceeEEEEEEECCEEEEEEEEeCCC--cHHHHHh-------hHHHc
Confidence 79999999999999999999887642 22222222 2222 22333456899999999 4333322 23457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
..+|++|+|+|+++.. .....++.........+.|+++|+||+|+...... ......+....+ .+++++||++|.|
T Consensus 72 ~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~-~~~~e~Sa~~~~~ 150 (191)
T cd04112 72 RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYG-VPFMETSAKTGLN 150 (191)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcC-CeEEEEeCCCCCC
Confidence 8899999999998654 22333333332222247899999999999643221 112223333333 4899999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCc
Q 018949 271 VEDIRDWILTKLPLGPAYYPKD 292 (348)
Q Consensus 271 i~eL~~~i~~~l~~~~~~~~~~ 292 (348)
+++++.+|.+.+....+.++.+
T Consensus 151 v~~l~~~l~~~~~~~~~~~~~~ 172 (191)
T cd04112 151 VELAFTAVAKELKHRKYEQPDE 172 (191)
T ss_pred HHHHHHHHHHHHHHhccccCCC
Confidence 9999999999887765554444
No 33
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.87 E-value=5.8e-21 Score=160.91 Aligned_cols=154 Identities=20% Similarity=0.236 Sum_probs=107.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|++|||||||++++++.++.. ...+.++.+.....+..+ ...+.+|||||. ..+.. ....++.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~--~~~~~-------~~~~~~~ 71 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN-QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ--ERFRS-------LIPSYIR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc-cCCCceeeeEEEEEEEECCEEEEEEEEECCCc--HHHHH-------HHHHHhc
Confidence 79999999999999999999988753 445555555544444433 356899999993 33322 2344578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhh-HHHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++++|+|.+++. .....++.........+.|+++|+||+|+..... ..+.........+ .+++++||++|.|+
T Consensus 72 ~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 150 (161)
T cd01861 72 DSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELN-AMFIETSAKAGHNV 150 (161)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhC-CEEEEEeCCCCCCH
Confidence 999999999998653 4444444444444324699999999999954322 2222233333333 57999999999999
Q ss_pred HHHHHHHHHh
Q 018949 272 EDIRDWILTK 281 (348)
Q Consensus 272 ~eL~~~i~~~ 281 (348)
++++++|.+.
T Consensus 151 ~~l~~~i~~~ 160 (161)
T cd01861 151 KELFRKIASA 160 (161)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 34
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=6.7e-21 Score=161.54 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=104.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|++|+|||||++++.+..+..... +..+.......+..+ ...+.+|||||. ..+.. ....+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~G~--~~~~~-------~~~~~ 72 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG-NTIGVDFTMKTLEIEGKRVKLQIWDTAGQ--ERFRT-------ITQSY 72 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC-CccceEEEEEEEEECCEEEEEEEEECCCh--HHHHH-------HHHHH
Confidence 3589999999999999999998876542211 111112222222223 367899999993 33222 23445
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
++.+|++++|+|+++.. .....++.........+.|+++|+||+|+....+. ......+.+..+...++++||++|.
T Consensus 73 ~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 152 (165)
T cd01864 73 YRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQ 152 (165)
T ss_pred hccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCC
Confidence 78999999999998754 33333443333322357899999999999754321 1223344444555578999999999
Q ss_pred CHHHHHHHHHHh
Q 018949 270 GVEDIRDWILTK 281 (348)
Q Consensus 270 gi~eL~~~i~~~ 281 (348)
|++++++.+.+.
T Consensus 153 ~v~~~~~~l~~~ 164 (165)
T cd01864 153 NVEEAFLLMATE 164 (165)
T ss_pred CHHHHHHHHHHh
Confidence 999999999865
No 35
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=7.2e-22 Score=186.12 Aligned_cols=168 Identities=29% Similarity=0.334 Sum_probs=130.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
..+.|+|+|+||||||||+|+|......+|++.+|||++.+...++.+|+++.|+||+|+.+...........+++...+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~ 346 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRI 346 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999988777888889999999999
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhccc----c------cCCCCEEEEEeccCCCCh-hhHHH----HHHHHHhcCCCC
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGD----H------KDKLPILLVLNKKDLIKP-GEIAK----KLEWYEKFTDVD 258 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~----~------~~~~p~ivv~NK~Dl~~~-~~~~~----~~~~~~~~~~~~ 258 (348)
..+|+|++|+|+.......+..+.+.+.. . ....|++++.||+|+... .+... +... .-.....
T Consensus 347 ~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~~~~~~~ 425 (531)
T KOG1191|consen 347 ERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-EGRSVFP 425 (531)
T ss_pred hhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-ccCcccc
Confidence 99999999999954442222222222211 1 134789999999999865 22111 1111 1111222
Q ss_pred eEEEecCCCCCCHHHHHHHHHHhC
Q 018949 259 EVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 259 ~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
.+.++|+++++|+.+|..++.+.+
T Consensus 426 i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 426 IVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred eEEEeeechhhhHHHHHHHHHHHH
Confidence 445699999999999999988754
No 36
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.87 E-value=5.6e-21 Score=160.68 Aligned_cols=154 Identities=21% Similarity=0.195 Sum_probs=102.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++.+.++. ....+++....... +......+.+|||||. ..+..+ ...++.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~l-------~~~~~~ 71 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--EEYSAM-------RDQYMR 71 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc--CCcCCcchheEEEEEEECCEEEEEEEEECCCC--cchHHH-------HHHHHh
Confidence 7999999999999999999987764 22333333322222 3333456889999994 333333 234577
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++++|+|.++.. .....++....+.. ..+.|+++|+||+|+............+....+ .+++++||++|.|+
T Consensus 72 ~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 150 (162)
T cd04138 72 TGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYG-IPYIETSAKTRQGV 150 (162)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhC-CeEEEecCCCCCCH
Confidence 899999999997643 33333333333221 157899999999999753322222222322233 37999999999999
Q ss_pred HHHHHHHHHhC
Q 018949 272 EDIRDWILTKL 282 (348)
Q Consensus 272 ~eL~~~i~~~l 282 (348)
+++++++.+.+
T Consensus 151 ~~l~~~l~~~~ 161 (162)
T cd04138 151 EEAFYTLVREI 161 (162)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 37
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.87 E-value=7e-21 Score=166.93 Aligned_cols=156 Identities=19% Similarity=0.254 Sum_probs=105.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.|+++|..|||||||++++....+... ..+..+.......+. ...+.+.+|||+| +..+..+ +..+++
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~-~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaG--qe~~~~l-------~~~y~~ 71 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEA-CKSGVGVDFKIKTVELRGKKIRLQIWDTAG--QERFNSI-------TSAYYR 71 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCc-CCCcceeEEEEEEEEECCEEEEEEEEeCCC--chhhHHH-------HHHHhc
Confidence 589999999999999999998877421 112222233222233 3347899999999 4444433 345588
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
.+|++|+|+|.++.. +....|+. .++. ...+.|+++|+||+|+....++. .....+........+++|||++|.|
T Consensus 72 ~ad~iIlVfDvtd~~Sf~~l~~w~~-~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~g 150 (202)
T cd04120 72 SAKGIILVYDITKKETFDDLPKWMK-MIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFN 150 (202)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHH-HHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 999999999998754 33333333 3332 22579999999999997544332 2223333332234799999999999
Q ss_pred HHHHHHHHHHhCC
Q 018949 271 VEDIRDWILTKLP 283 (348)
Q Consensus 271 i~eL~~~i~~~l~ 283 (348)
++++|.++.+.+.
T Consensus 151 V~e~F~~l~~~~~ 163 (202)
T cd04120 151 VDEIFLKLVDDIL 163 (202)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987664
No 38
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.87 E-value=5.7e-21 Score=163.44 Aligned_cols=154 Identities=20% Similarity=0.282 Sum_probs=104.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|++|||||||++++.+..+....++.+. ....+..++..+.+|||||. ..+.. .+..++
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~----~~~~~~~~~~~l~l~D~~G~--~~~~~-------~~~~~~ 79 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGF----QIKTLEYEGYKLNIWDVGGQ--KTLRP-------YWRNYF 79 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCcccc----ceEEEEECCEEEEEEECCCC--HHHHH-------HHHHHh
Confidence 456899999999999999999998765433332221 12223345688999999994 33222 234557
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~ 267 (348)
..+|++++|+|+++.. .....++...+.. ...+.|+++|+||+|+.......+....+.. .....+++++||++
T Consensus 80 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04154 80 ESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVT 159 (173)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCC
Confidence 8999999999998753 3333344444322 1257999999999999754333332222221 12335899999999
Q ss_pred CCCHHHHHHHHHH
Q 018949 268 GHGVEDIRDWILT 280 (348)
Q Consensus 268 g~gi~eL~~~i~~ 280 (348)
|.|++++++++.+
T Consensus 160 g~gi~~l~~~l~~ 172 (173)
T cd04154 160 GEGLLQGIDWLVD 172 (173)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999999864
No 39
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.87 E-value=4.9e-21 Score=163.29 Aligned_cols=153 Identities=18% Similarity=0.187 Sum_probs=102.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
..+|+++|.+|||||||++++....+....++.+.+ . ..+......+.+|||||. ..+..+ ...++.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~---~-~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~~ 75 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFN---V-ETVTYKNVKFNVWDVGGQ--DKIRPL-------WRHYYT 75 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCccccCCcccc---e-EEEEECCEEEEEEECCCC--HHHHHH-------HHHHhc
Confidence 458999999999999999999876654222222221 1 223346788999999994 333322 334578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHH--h-cCCCCeEEEecCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--K-FTDVDEVIPVSAKYG 268 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~--~-~~~~~~i~~vSA~~g 268 (348)
.+|++|+|+|+++.. .....++...+... ..+.|+++|+||+|+......++....+. . .....+++++||++|
T Consensus 76 ~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g 155 (168)
T cd04149 76 GTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSG 155 (168)
T ss_pred cCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCC
Confidence 999999999998753 44445555554431 25689999999999864322222222221 1 112236899999999
Q ss_pred CCHHHHHHHHHH
Q 018949 269 HGVEDIRDWILT 280 (348)
Q Consensus 269 ~gi~eL~~~i~~ 280 (348)
.|+++++++|.+
T Consensus 156 ~gv~~~~~~l~~ 167 (168)
T cd04149 156 DGLYEGLTWLSS 167 (168)
T ss_pred CChHHHHHHHhc
Confidence 999999999865
No 40
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.3e-21 Score=162.12 Aligned_cols=163 Identities=23% Similarity=0.271 Sum_probs=121.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..||+++|..+||||||+-++...++... .++.+..-.+....+......+.+|||+| +++++++.. -|
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAG--QERy~slap-------MY 74 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAG--QERYHSLAP-------MY 74 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCC--ccccccccc-------ce
Confidence 455899999999999999999999887642 34444444444444444558899999999 677777744 45
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+++|+++|+|+|.++.. .....|+.++-+...+++-+.+|+||+|+...+++ .+....+....+. .++++||++|.
T Consensus 75 yRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gl-l~~ETSAKTg~ 153 (200)
T KOG0092|consen 75 YRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGL-LFFETSAKTGE 153 (200)
T ss_pred ecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCC-EEEEEeccccc
Confidence 89999999999998754 55666776666654455666779999999874433 2233444444554 79999999999
Q ss_pred CHHHHHHHHHHhCCCCC
Q 018949 270 GVEDIRDWILTKLPLGP 286 (348)
Q Consensus 270 gi~eL~~~i~~~l~~~~ 286 (348)
|++++|..|.+.++...
T Consensus 154 Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 154 NVNEIFQAIAEKLPCSD 170 (200)
T ss_pred CHHHHHHHHHHhccCcc
Confidence 99999999999997643
No 41
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.87 E-value=6.1e-21 Score=163.81 Aligned_cols=155 Identities=21% Similarity=0.200 Sum_probs=105.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|.+|||||||++++.+..+. ..+.+|........ +....+.+.+|||||. ..+..+. ..++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~-------~~~~ 70 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ--EDYDRLR-------PLSY 70 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEECCCc--cchhhhh-------hhhc
Confidence 37999999999999999999988763 33344443333222 2333477899999994 4433332 2357
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-------------HHHHHHHhcCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTDVD 258 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~~~~~~~~~~~~ 258 (348)
..+|++|+|+|.++.. ......|...++....+.|+++|+||+|+....+.. +....+....+..
T Consensus 71 ~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~ 150 (175)
T cd01874 71 PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAV 150 (175)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCc
Confidence 8999999999998754 233333444443333579999999999986543211 1122233334446
Q ss_pred eEEEecCCCCCCHHHHHHHHHHh
Q 018949 259 EVIPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 259 ~i~~vSA~~g~gi~eL~~~i~~~ 281 (348)
+++++||++|.|++++|+.+.+.
T Consensus 151 ~~~e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 151 KYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred EEEEecCCCCCCHHHHHHHHHHH
Confidence 89999999999999999998874
No 42
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=5.9e-21 Score=196.53 Aligned_cols=162 Identities=31% Similarity=0.387 Sum_probs=131.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
++|+|+|.+|||||||+|+|++.+...+.+.+++|++........++..+.+|||||+.. ....+...+...+..++..
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~-~~~~~~~~~~~~~~~~~~~ 354 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA-DVEGIDSAIASQAQIAVSL 354 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCC-CCccHHHHHHHHHHHHHHh
Confidence 489999999999999999999998888899999999988888777888999999999742 2234555666777788899
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
||++|||+|++.+....+..+...++. .++|+++|+||+|+...... . ..+.. .+...++++||++|.|+++|+
T Consensus 355 aD~iL~VvDa~~~~~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~~--~-~~~~~-lg~~~~~~iSA~~g~GI~eLl 428 (712)
T PRK09518 355 ADAVVFVVDGQVGLTSTDERIVRMLRR--AGKPVVLAVNKIDDQASEYD--A-AEFWK-LGLGEPYPISAMHGRGVGDLL 428 (712)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECcccccchhh--H-HHHHH-cCCCCeEEEECCCCCCchHHH
Confidence 999999999998887777777777766 78999999999998653221 1 12211 233356899999999999999
Q ss_pred HHHHHhCCC
Q 018949 276 DWILTKLPL 284 (348)
Q Consensus 276 ~~i~~~l~~ 284 (348)
++|.+.++.
T Consensus 429 ~~i~~~l~~ 437 (712)
T PRK09518 429 DEALDSLKV 437 (712)
T ss_pred HHHHHhccc
Confidence 999998865
No 43
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=6.5e-21 Score=196.23 Aligned_cols=169 Identities=22% Similarity=0.239 Sum_probs=127.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHH--HHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMM--KNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~--~~~~~ 191 (348)
...+|+++|.+|||||||+|+|++.+...++..++||++.....+..++..+.+|||||+...........+. .....
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~ 528 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQA 528 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHH
Confidence 3469999999999999999999999877778999999998887777788889999999974322111111111 22345
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g 268 (348)
+++.+|++++|+|++.+....+..+...+.. .++|+++|+||+|+.+..........+.. .....+++++||++|
T Consensus 529 ~i~~advvilViDat~~~s~~~~~i~~~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg 606 (712)
T PRK09518 529 AIERSELALFLFDASQPISEQDLKVMSMAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTG 606 (712)
T ss_pred HhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCC
Confidence 6789999999999998887766656555544 67999999999999865433323222322 234568899999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 018949 269 HGVEDIRDWILTKLPL 284 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (348)
.|+++|++.+.+.+..
T Consensus 607 ~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 607 WHTNRLAPAMQEALES 622 (712)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987754
No 44
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.87 E-value=5.9e-21 Score=167.11 Aligned_cols=166 Identities=20% Similarity=0.235 Sum_probs=106.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++.+..+... ..|.++....... ++.....+.+|||||+.... .............++.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~-~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~-~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEE-YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP-GTAGQEWMDPRFRGLR 79 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcc-cCCccccccceeEEEECCEEEEEEEEeCCCcccCC-ccchhHHHHHHHhhhc
Confidence 799999999999999999998876532 2333322222222 33334678999999964321 1122222233445578
Q ss_pred CccEEEEEecCCCCCc--hHHHHHHHhcccc---cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 195 NADCIVVLVDACKAPE--RIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~---~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
.+|++|+|+|++++.. ....++..+.... ..++|+++|+||+|+...... ......+......+++++|||++|
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 9999999999987542 2222222222211 257999999999999653221 112222222223458999999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 018949 269 HGVEDIRDWILTKLPL 284 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (348)
.|++++|+.+.+.+..
T Consensus 160 ~~v~~lf~~i~~~~~~ 175 (198)
T cd04142 160 WHILLLFKELLISATT 175 (198)
T ss_pred CCHHHHHHHHHHHhhc
Confidence 9999999999976643
No 45
>PRK04213 GTP-binding protein; Provisional
Probab=99.87 E-value=1.3e-20 Score=165.24 Aligned_cols=161 Identities=26% Similarity=0.348 Sum_probs=105.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh------hhhhHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK------IHMLDSMMMK 187 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~------~~~l~~~~~~ 187 (348)
+..+|+++|.+|||||||+|++.+..+. ++..+++|.......+ . .+.+|||||+.... ....+.....
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYDW--G--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEee--c--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 4458999999999999999999998754 5667777776543322 2 58999999963211 1112221212
Q ss_pred HHHhhccCccEEEEEecCCCCCc-----------hHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCC
Q 018949 188 NVRSAGINADCIVVLVDACKAPE-----------RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (348)
Q Consensus 188 ~~~~~~~~ad~iv~VvD~~~~~~-----------~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (348)
.+......++++++|+|++.... ..+..+...+.. .++|+++|+||+|+.... ......+....+
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~ 158 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR--DEVLDEIAERLG 158 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH--HHHHHHHHHHhc
Confidence 22234567899999999864321 122333444444 579999999999997543 112222222222
Q ss_pred C--------CeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 257 V--------DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 257 ~--------~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
. .+++++||++| |+++++++|.+.+..
T Consensus 159 ~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 159 LYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred CCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 1 25899999999 999999999987754
No 46
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.86 E-value=6.5e-21 Score=162.59 Aligned_cols=158 Identities=16% Similarity=0.187 Sum_probs=107.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.+|||||||++++.+..+. . +.. |.......+...+..+.+|||||.. .+. ..+..++..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~-~~~-T~~~~~~~~~~~~~~i~l~Dt~G~~--~~~-------~~~~~~~~~a 67 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--Q-PIP-TIGFNVETVEYKNLKFTIWDVGGKH--KLR-------PLWKHYYLNT 67 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--C-cCC-cCceeEEEEEECCEEEEEEECCCCh--hcc-------hHHHHHhccC
Confidence 5899999999999999999987543 2 222 2222223455667899999999952 222 2233457899
Q ss_pred cEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc----CCCCeEEEecCCCCC
Q 018949 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF----TDVDEVIPVSAKYGH 269 (348)
Q Consensus 197 d~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~i~~vSA~~g~ 269 (348)
|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+.......+....+... .....++++||++|.
T Consensus 68 d~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 147 (169)
T cd04158 68 QAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGM 147 (169)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCC
Confidence 9999999998753 44445555555432 1458999999999997543333322222111 112367899999999
Q ss_pred CHHHHHHHHHHhCCCCCC
Q 018949 270 GVEDIRDWILTKLPLGPA 287 (348)
Q Consensus 270 gi~eL~~~i~~~l~~~~~ 287 (348)
|++++|++|.+.+...++
T Consensus 148 gv~~~f~~l~~~~~~~~~ 165 (169)
T cd04158 148 GLYEGLDWLSRQLVAAGV 165 (169)
T ss_pred CHHHHHHHHHHHHhhccc
Confidence 999999999988776544
No 47
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.86 E-value=9.8e-21 Score=163.07 Aligned_cols=157 Identities=25% Similarity=0.306 Sum_probs=107.1
Q ss_pred CCCCccEEEEEcCCCCChHHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh-hhHHHH---
Q 018949 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDSMM--- 185 (348)
Q Consensus 111 ~~~~~~~v~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-~l~~~~--- 185 (348)
+..+.++|+++|.+|+|||||+|++.+.. ...+++.+++|.+......+ ..+.+|||||+...... .....+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN---DGFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC---CcEEEEeCCCCccccCChhHHHHHHHH
Confidence 44566799999999999999999999986 44456778888765543332 26999999997432111 001111
Q ss_pred HHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHH----HhcCCCCeEE
Q 018949 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWY----EKFTDVDEVI 261 (348)
Q Consensus 186 ~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~----~~~~~~~~i~ 261 (348)
...+......+|++++|+|++.+.......+...+.. .++|+++|+||+|+....+.......+ .......+++
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~ 168 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQ 168 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceE
Confidence 1222222345789999999988776666666666655 679999999999998765443333333 3322234799
Q ss_pred EecCCCCCCHH
Q 018949 262 PVSAKYGHGVE 272 (348)
Q Consensus 262 ~vSA~~g~gi~ 272 (348)
++||++|+|++
T Consensus 169 ~~Sa~~g~gi~ 179 (179)
T TIGR03598 169 LFSSLKKTGID 179 (179)
T ss_pred EEECCCCCCCC
Confidence 99999999974
No 48
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.86 E-value=5.8e-21 Score=161.14 Aligned_cols=155 Identities=19% Similarity=0.202 Sum_probs=102.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|.+|||||||++++.+..+. ....+|+.......+ ......+.+|||||. ..+..+. ..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~-------~~~~ 70 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGT--EQFTAMR-------DLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCc--cccchHH-------HHHh
Confidence 37999999999999999999987754 233334333322222 333466889999994 3444332 2346
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+.+|++++|+|.++.. .....++....... ..+.|+++|+||+|+...... ......+....+ .+++++||++|.
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (163)
T cd04136 71 KNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWG-CPFYETSAKSKI 149 (163)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcC-CeEEEecCCCCC
Confidence 8899999999997643 22333333222211 257899999999999653322 112223333334 589999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|++++++++.+.+
T Consensus 150 ~v~~l~~~l~~~~ 162 (163)
T cd04136 150 NVDEVFADLVRQI 162 (163)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999998754
No 49
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.86 E-value=4.7e-21 Score=160.73 Aligned_cols=156 Identities=26% Similarity=0.322 Sum_probs=109.6
Q ss_pred EEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEE
Q 018949 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 199 (348)
Q Consensus 120 i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~i 199 (348)
++|.+|||||||+|++.+... .+...+++|.......+..++..+.+|||||+........+..+....... ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQ-KVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcc-cccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEE
Confidence 589999999999999999864 356778888887766677777889999999964422222222222222222 599999
Q ss_pred EEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHH
Q 018949 200 VVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWIL 279 (348)
Q Consensus 200 v~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~ 279 (348)
++|+|+++.... .. +...+.. .++|+++|+||+|+.+..........+....+ .+++++||++|.|++++++++.
T Consensus 79 i~v~d~~~~~~~-~~-~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~iSa~~~~~~~~l~~~l~ 153 (158)
T cd01879 79 VNVVDATNLERN-LY-LTLQLLE--LGLPVVVALNMIDEAEKRGIKIDLDKLSELLG-VPVVPTSARKGEGIDELKDAIA 153 (158)
T ss_pred EEEeeCCcchhH-HH-HHHHHHH--cCCCEEEEEehhhhcccccchhhHHHHHHhhC-CCeEEEEccCCCCHHHHHHHHH
Confidence 999999864332 22 2223333 57899999999999765433332333433333 3799999999999999999998
Q ss_pred HhC
Q 018949 280 TKL 282 (348)
Q Consensus 280 ~~l 282 (348)
+.+
T Consensus 154 ~~~ 156 (158)
T cd01879 154 ELA 156 (158)
T ss_pred HHh
Confidence 754
No 50
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.86 E-value=6.7e-21 Score=162.03 Aligned_cols=157 Identities=17% Similarity=0.128 Sum_probs=102.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.+|+++|++|||||||++++.+.++... .++.+.+.......+......+.+|||||. ..+..+ ...+++
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~--~~~~~~-------~~~~~~ 74 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ--ERFRTI-------TTAYYR 74 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCch--HHHHHH-------HHHHhC
Confidence 5899999999999999999998876432 122222222122223334467899999993 333322 234578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++++|+|+++.. .....++....+....+.|+++|+||+|+...... .+....+....+ .+++++||++|.|+
T Consensus 75 ~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 153 (167)
T cd01867 75 GAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYG-IKFLETSAKANINV 153 (167)
T ss_pred CCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 999999999997654 22333333332222257899999999999753321 111222222223 37999999999999
Q ss_pred HHHHHHHHHhC
Q 018949 272 EDIRDWILTKL 282 (348)
Q Consensus 272 ~eL~~~i~~~l 282 (348)
++++.++.+.+
T Consensus 154 ~~~~~~i~~~~ 164 (167)
T cd01867 154 EEAFFTLAKDI 164 (167)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 51
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.86 E-value=7e-22 Score=179.10 Aligned_cols=206 Identities=18% Similarity=0.163 Sum_probs=155.4
Q ss_pred eEEEechhhhhHhhhhhhhhhhhhhHHhhhhhhhhccccCCCCccCCcCCccccccccCCCCCCCCCCChhhhhhccccC
Q 018949 30 GFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSNQREMDLDDGDEMEFDDASSFLSLSEKPDRNMASPDDYEIEEFDYAS 109 (348)
Q Consensus 30 ~~~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (348)
+++++.++.++++..++++..++.++++++.+... |+. ++
T Consensus 120 GG~GG~GN~~Fks~~nrAP~~a~~G~~Ge~r~v~L-ELK---------------------------ll------------ 159 (369)
T COG0536 120 GGRGGLGNAHFKSSVNRAPRFATPGEPGEERDLRL-ELK---------------------------LL------------ 159 (369)
T ss_pred CCCCCccchhhcCcccCCcccCCCCCCCceEEEEE-EEe---------------------------ee------------
Confidence 66788899999999999999998888888765443 111 11
Q ss_pred CCCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC-CCeeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 110 ~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
..|++||.||+|||||+++++..+.. +.++|.||..+..+++.. .+..|++.|.||+++...... .+-..
T Consensus 160 ------ADVGLVG~PNaGKSTlls~vS~AkPK-IadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~--GLG~~ 230 (369)
T COG0536 160 ------ADVGLVGLPNAGKSTLLSAVSAAKPK-IADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGV--GLGLR 230 (369)
T ss_pred ------cccccccCCCCcHHHHHHHHhhcCCc-ccCCccccccCcccEEEecCCCcEEEecCcccccccccCC--CccHH
Confidence 15999999999999999999999987 689999999999998885 566799999999988654322 22234
Q ss_pred HHhhccCccEEEEEecCCCCC----chHHHHHHHhcccc---cCCCCEEEEEeccCCCC-hhhHHHHHHHHHhcCCCCeE
Q 018949 189 VRSAGINADCIVVLVDACKAP----ERIDEILEEGVGDH---KDKLPILLVLNKKDLIK-PGEIAKKLEWYEKFTDVDEV 260 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~----~~~~~~~~~~~~~~---~~~~p~ivv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~i 260 (348)
+++++++|.++++|+|.+... ......+...+... ..++|.+||+||+|++. .++.+.....+....+....
T Consensus 231 FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~ 310 (369)
T COG0536 231 FLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVF 310 (369)
T ss_pred HHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcc
Confidence 567789999999999997433 23333344333332 16799999999999654 45556566666655554433
Q ss_pred EEecCCCCCCHHHHHHHHHHhCCC
Q 018949 261 IPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
+++||.+++|+++|...+.+.+..
T Consensus 311 ~~ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 311 YLISALTREGLDELLRALAELLEE 334 (369)
T ss_pred eeeehhcccCHHHHHHHHHHHHHH
Confidence 449999999999999999887755
No 52
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.86 E-value=4.9e-21 Score=161.96 Aligned_cols=155 Identities=19% Similarity=0.186 Sum_probs=102.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeE--EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|++|||||||++++.+..+.. ...+++.... ...+......+.+|||||. ..+..+. ..++.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~--~~~~~~~-------~~~~~ 70 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD--DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQ--EEFSAMR-------DQYMR 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc--ccCCchhhhEEEEEEECCEEEEEEEEECCCc--ccchHHH-------HHHHh
Confidence 79999999999999999999877642 2223333222 2223344567889999994 3333332 23467
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
.+|++++|+|+++.. .....+.....+.. ..+.|+++|+||+|+...... ......+....+ .+++++||++|.|
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 149 (164)
T smart00173 71 TGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWG-CPFLETSAKERVN 149 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcC-CEEEEeecCCCCC
Confidence 899999999998643 22223322222211 147899999999999753321 112222333333 5899999999999
Q ss_pred HHHHHHHHHHhCC
Q 018949 271 VEDIRDWILTKLP 283 (348)
Q Consensus 271 i~eL~~~i~~~l~ 283 (348)
+++++++|.+.+.
T Consensus 150 i~~l~~~l~~~~~ 162 (164)
T smart00173 150 VDEAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
No 53
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.86 E-value=7.7e-21 Score=165.52 Aligned_cols=159 Identities=19% Similarity=0.190 Sum_probs=108.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|..|||||||+.++....+.. .+..|...... ..++...+.+.+||||| ++.+..+. ..+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G--~e~~~~l~-------~~~ 71 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPK--EYIPTVFDNYSAQTAVDGRTVSLNLWDTAG--QEEYDRLR-------TLS 71 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCc--CCCCceEeeeEEEEEECCEEEEEEEEECCC--chhhhhhh-------hhh
Confidence 3489999999999999999999877642 22222222222 12344457899999999 55554443 345
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-------------HHHHHHHHhcCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-------------AKKLEWYEKFTDV 257 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------------~~~~~~~~~~~~~ 257 (348)
++.+|++|+|+|.++.. +.....|...+.....+.|+++|+||+|+.+.... .+....+....+.
T Consensus 72 ~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 151 (191)
T cd01875 72 YPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHA 151 (191)
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCC
Confidence 78999999999998754 33332233333322367999999999999653211 1122333344454
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 258 DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 258 ~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
.+++++||++|.|++++|.++.+.+..
T Consensus 152 ~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 152 VKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 589999999999999999999987754
No 54
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.86 E-value=6.5e-21 Score=163.69 Aligned_cols=156 Identities=19% Similarity=0.164 Sum_probs=107.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.++||||||+.++....+.. .+..|...... ..++...+.+.+|||+| +..+..+.. .+++
T Consensus 3 kivv~G~~~vGKTsli~~~~~~~f~~--~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G--~~~~~~~~~-------~~~~ 71 (176)
T cd04133 3 KCVTVGDGAVGKTCMLICYTSNKFPT--DYIPTVFDNFSANVSVDGNTVNLGLWDTAG--QEDYNRLRP-------LSYR 71 (176)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--CCCCcceeeeEEEEEECCEEEEEEEEECCC--Cccccccch-------hhcC
Confidence 79999999999999999999887742 22223222222 22334457899999999 445544432 3578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChh-----------hHHHHHHHHHhcCCCCeEE
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG-----------EIAKKLEWYEKFTDVDEVI 261 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~i~ 261 (348)
.+|++|+|+|.++.. ......|...++....+.|+++|+||+|+.+.. ...+....+....+..+++
T Consensus 72 ~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~ 151 (176)
T cd04133 72 GADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYI 151 (176)
T ss_pred CCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEE
Confidence 999999999998755 333222333333333679999999999996432 1122334444445554799
Q ss_pred EecCCCCCCHHHHHHHHHHhCC
Q 018949 262 PVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
+|||++|.|++++|+.+.+.+.
T Consensus 152 E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 152 ECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred ECCCCcccCHHHHHHHHHHHHh
Confidence 9999999999999999998663
No 55
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.86 E-value=9.4e-21 Score=160.01 Aligned_cols=155 Identities=19% Similarity=0.190 Sum_probs=104.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|.+|+|||||++++++..+. ....+++...... .+......+.+|||||.. .+..+ ...++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~~ 71 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFV--TDYDPTIEDSYTKQCEIDGQWAILDILDTAGQE--EFSAM-------REQYM 71 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceEEEEEEECCEEEEEEEEECCCCc--chhHH-------HHHHH
Confidence 48999999999999999999987653 3444444433332 233334678999999943 33332 23446
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
..+|++++|+|+++.. .....++....+.. ..+.|+++|+||+|+....... .....+....+ .+++++||++|.
T Consensus 72 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 150 (164)
T cd04145 72 RTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLK-IPYIETSAKDRL 150 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcC-CcEEEeeCCCCC
Confidence 7899999999998754 22333333332211 2578999999999997543221 12223333334 378999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|++++++.|.+.+
T Consensus 151 ~i~~l~~~l~~~~ 163 (164)
T cd04145 151 NVDKAFHDLVRVI 163 (164)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999998754
No 56
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.86 E-value=1.5e-20 Score=165.24 Aligned_cols=160 Identities=28% Similarity=0.353 Sum_probs=108.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
++|+++|++|||||||+|++++.... +...+.+|.......+...+ ..+.+|||||+.+.........+ ......+.
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-~~~~~~~~ 119 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAF-RSTLEEVA 119 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHH-HHHHHHHh
Confidence 48999999999999999999998753 34455556555544444433 38999999997543222222222 22334467
Q ss_pred CccEEEEEecCCCCCchH-HHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 195 NADCIVVLVDACKAPERI-DEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~~~-~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
.+|++++|+|++++.... ...+...+... ..+.|+++|+||+|+....... ... .....+++++||++|.|++
T Consensus 120 ~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~--~~~~~~~~~~Sa~~~~gi~ 194 (204)
T cd01878 120 EADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERL--EAGRPDAVFISAKTGEGLD 194 (204)
T ss_pred cCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHh--hcCCCceEEEEcCCCCCHH
Confidence 899999999998765332 22233333322 1468999999999998755433 111 2234579999999999999
Q ss_pred HHHHHHHHhC
Q 018949 273 DIRDWILTKL 282 (348)
Q Consensus 273 eL~~~i~~~l 282 (348)
+++++|.+.+
T Consensus 195 ~l~~~L~~~~ 204 (204)
T cd01878 195 ELLEAIEELL 204 (204)
T ss_pred HHHHHHHhhC
Confidence 9999998653
No 57
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.86 E-value=1.3e-20 Score=159.15 Aligned_cols=156 Identities=22% Similarity=0.208 Sum_probs=105.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.+|+++|++|+|||||+|++.+.++.. ..++.+.+.......+......+.+||||| +..+... ...+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G--~~~~~~~-------~~~~~~ 72 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAG--QERYRSL-------APMYYR 72 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCc--hHHHHHH-------HHHHhc
Confidence 379999999999999999999988653 223333333333334445567899999999 3333222 234578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChh--hHHHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
.+|++++|+|+++.. .....++.........+.|+++|+||+|+.... ....... +....+ .+++++||++|.|
T Consensus 73 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~-~~~~~~-~~~~~~Sa~~~~~ 150 (163)
T cd01860 73 GAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQE-YADENG-LLFFETSAKTGEN 150 (163)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHH-HHHHcC-CEEEEEECCCCCC
Confidence 899999999998654 333333333333222578999999999987432 1222222 222333 5799999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
+.++++++.+.+
T Consensus 151 v~~l~~~l~~~l 162 (163)
T cd01860 151 VNELFTEIAKKL 162 (163)
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 58
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.86 E-value=6.5e-21 Score=161.68 Aligned_cols=155 Identities=22% Similarity=0.287 Sum_probs=102.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCcee---eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLS---IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+|+++|++|+|||||++++.+.... .......+|.......+..++..+.+|||||+. .+. ..+..++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~--~~~-------~~~~~~~ 71 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQE--SLR-------SLWDKYY 71 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCCh--hhH-------HHHHHHh
Confidence 4899999999999999999875321 011122333333334455567899999999953 222 2233457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc---C--CCCeEEEecC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---T--DVDEVIPVSA 265 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~--~~~~i~~vSA 265 (348)
..+|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+.......+....+... . ...+++++||
T Consensus 72 ~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 151 (167)
T cd04160 72 AECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSA 151 (167)
T ss_pred CCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeC
Confidence 8999999999997643 22223333333321 2579999999999987654333333333221 1 2247999999
Q ss_pred CCCCCHHHHHHHHHH
Q 018949 266 KYGHGVEDIRDWILT 280 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~ 280 (348)
++|.|+++++++|.+
T Consensus 152 ~~g~gv~e~~~~l~~ 166 (167)
T cd04160 152 LEGTGVREGIEWLVE 166 (167)
T ss_pred CCCcCHHHHHHHHhc
Confidence 999999999999875
No 59
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.86 E-value=9.1e-21 Score=160.88 Aligned_cols=153 Identities=22% Similarity=0.265 Sum_probs=99.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCc-eEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+|+++|.+|||||||++++++..+... ..+.. ...............+.+|||||. ..+..+. ..++..
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~-------~~~~~~ 72 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFRES-YIPTIEDTYRQVISCSKNICTLQITDTTGS--HQFPAMQ-------RLSISK 72 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC-cCCcchheEEEEEEECCEEEEEEEEECCCC--CcchHHH-------HHHhhc
Confidence 799999999999999999998876421 11111 111112223344577999999995 3333322 234678
Q ss_pred ccEEEEEecCCCCCc--hHHHHHHHhccc----ccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCC
Q 018949 196 ADCIVVLVDACKAPE--RIDEILEEGVGD----HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 196 ad~iv~VvD~~~~~~--~~~~~~~~~~~~----~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
+|++|+|+|.++... ....++ ..++. ...+.|+++|+||+|+....++. .....+....+ .++++|||++|
T Consensus 73 ~~~~ilv~d~~~~~s~~~~~~~~-~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~SA~~g 150 (165)
T cd04140 73 GHAFILVYSVTSKQSLEELKPIY-ELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWN-CAFMETSAKTN 150 (165)
T ss_pred CCEEEEEEECCCHHHHHHHHHHH-HHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhC-CcEEEeecCCC
Confidence 999999999987552 223322 22222 11578999999999997533321 11222222223 47899999999
Q ss_pred CCHHHHHHHHHHh
Q 018949 269 HGVEDIRDWILTK 281 (348)
Q Consensus 269 ~gi~eL~~~i~~~ 281 (348)
.|+++++++|.++
T Consensus 151 ~~v~~~f~~l~~~ 163 (165)
T cd04140 151 HNVQELFQELLNL 163 (165)
T ss_pred CCHHHHHHHHHhc
Confidence 9999999999864
No 60
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.86 E-value=8.9e-21 Score=160.94 Aligned_cols=155 Identities=13% Similarity=0.172 Sum_probs=102.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceE-EeE-EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRI-LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++.+.++... ..+..+. ... ....+.....+.+|||||. ..+..+ ...+++
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~--~~~~~~-------~~~~~~ 72 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSA-FVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQ--ERYRTI-------TTAYYR 72 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCEEEEEEEEECCCh--HHHHHH-------HHHHcc
Confidence 799999999999999999999886422 1121111 111 1222334477999999994 333322 345578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++++|+|.++.. .....|+.........+.|+++|+||+|+.+.... .+....+....+. +++++||++|.|+
T Consensus 73 ~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gv 151 (165)
T cd01865 73 GAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGF-EFFEASAKENINV 151 (165)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCC-EEEEEECCCCCCH
Confidence 999999999997643 22333333332222246899999999999754321 1222233333343 7999999999999
Q ss_pred HHHHHHHHHhC
Q 018949 272 EDIRDWILTKL 282 (348)
Q Consensus 272 ~eL~~~i~~~l 282 (348)
+++++++.+.+
T Consensus 152 ~~l~~~l~~~~ 162 (165)
T cd01865 152 KQVFERLVDII 162 (165)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 61
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.3e-20 Score=157.70 Aligned_cols=163 Identities=22% Similarity=0.226 Sum_probs=121.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
.+..+|+++|..+|||||||++++..++.. +-.+....+... ..+....+++++|||+| |+++.++ +.
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~-~YqATIGiDFlskt~~l~d~~vrLQlWDTAG--QERFrsl-------ip 89 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG--QERFRSL-------IP 89 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcc-cccceeeeEEEEEEEEEcCcEEEEEEEeccc--HHHHhhh-------hh
Confidence 455699999999999999999999888752 112222223222 23445567899999999 7777665 55
Q ss_pred hhccCccEEEEEecCCCC--CchHHHHHHHhcccccCC-CCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCC
Q 018949 191 SAGINADCIVVLVDACKA--PERIDEILEEGVGDHKDK-LPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~--~~~~~~~~~~~~~~~~~~-~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
.|++++.++|+|+|.++. ++...+|+....++.+.+ +-+++|+||.||.+.++............-..-++++||+.
T Consensus 90 sY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~ 169 (221)
T KOG0094|consen 90 SYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKA 169 (221)
T ss_pred hhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccC
Confidence 779999999999999864 477778888888776553 56778999999998876644433333322233789999999
Q ss_pred CCCHHHHHHHHHHhCCCC
Q 018949 268 GHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~~ 285 (348)
|.||..||..|...+++.
T Consensus 170 g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 170 GENVKQLFRRIAAALPGM 187 (221)
T ss_pred CCCHHHHHHHHHHhccCc
Confidence 999999999999988764
No 62
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=8.3e-21 Score=185.75 Aligned_cols=160 Identities=33% Similarity=0.422 Sum_probs=126.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
++|+++|.+|||||||+|+|.+.....+...+++|++.....+...+..+.+|||||+... ...+...+...+..++..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~-~~~~~~~~~~~~~~~~~~ 80 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPD-DDGFEKQIREQAELAIEE 80 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCc-chhHHHHHHHHHHHHHHh
Confidence 3799999999999999999999988778899999999888888888899999999997542 122444455566677899
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
+|++++|+|++.+....+..+..+++. .+.|+++|+||+|+..... ....+. ..+...++++||++|.|+++++
T Consensus 81 ad~il~vvd~~~~~~~~~~~~~~~l~~--~~~piilv~NK~D~~~~~~---~~~~~~-~lg~~~~~~iSa~~g~gv~~l~ 154 (435)
T PRK00093 81 ADVILFVVDGRAGLTPADEEIAKILRK--SNKPVILVVNKVDGPDEEA---DAYEFY-SLGLGEPYPISAEHGRGIGDLL 154 (435)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH--cCCcEEEEEECccCccchh---hHHHHH-hcCCCCCEEEEeeCCCCHHHHH
Confidence 999999999998877777777777776 6899999999999765221 112222 2344457999999999999999
Q ss_pred HHHHHhC
Q 018949 276 DWILTKL 282 (348)
Q Consensus 276 ~~i~~~l 282 (348)
+.+....
T Consensus 155 ~~I~~~~ 161 (435)
T PRK00093 155 DAILEEL 161 (435)
T ss_pred HHHHhhC
Confidence 9998744
No 63
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.86 E-value=1.8e-20 Score=158.91 Aligned_cols=154 Identities=20% Similarity=0.229 Sum_probs=107.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC---CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.|+++|.+|+|||||+|+|.+..+.. ...+++|.......+.. .+..+.+|||||. ..+..+ ....+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~--~~~~~~-------~~~~~ 71 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGH--EAFTNM-------RARGA 71 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCc--HHHHHH-------HHHHH
Confidence 69999999999999999999877653 33445565544344444 3678999999995 222222 22346
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh--hHHHHHHHHHh-----cCCCCeEEEecCC
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEK-----FTDVDEVIPVSAK 266 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~-----~~~~~~i~~vSA~ 266 (348)
..+|++++|+|++++...........+.. .++|+++|+||+|+.... ........+.. .....+++++||+
T Consensus 72 ~~~d~il~v~d~~~~~~~~~~~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (168)
T cd01887 72 SLTDIAILVVAADDGVMPQTIEAIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAK 149 (168)
T ss_pred hhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecc
Confidence 78999999999987654444344444444 678999999999987532 22222222211 1223579999999
Q ss_pred CCCCHHHHHHHHHHhC
Q 018949 267 YGHGVEDIRDWILTKL 282 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l 282 (348)
+|.|+++|+++|.+..
T Consensus 150 ~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 150 TGEGIDDLLEAILLLA 165 (168)
T ss_pred cCCCHHHHHHHHHHhh
Confidence 9999999999998764
No 64
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.86 E-value=8.8e-21 Score=161.07 Aligned_cols=155 Identities=21% Similarity=0.262 Sum_probs=104.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeE---EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI---LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+|+++|++|||||||++++.+..+. ...+.+..... ....+.....+.+||||| +..+..+ ...+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~~ 71 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG--QERFRAV-------TRSY 71 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCcccceeEEEEEEEECCEEEEEEEEECCC--cHHHHHH-------HHHH
Confidence 37999999999999999999988764 23333322221 122333456789999999 4333322 3445
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
++.+|++|+|+|+++.. .....++.........+.|+++|+||+|+...... .+....+....+ .+++++||++|.
T Consensus 72 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~ 150 (166)
T cd04122 72 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENG-LLFLECSAKTGE 150 (166)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcC-CEEEEEECCCCC
Confidence 78999999999998754 33334443332222257899999999999754322 122222333333 489999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|++++|..+.+.+
T Consensus 151 ~i~e~f~~l~~~~ 163 (166)
T cd04122 151 NVEDAFLETAKKI 163 (166)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999988755
No 65
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.86 E-value=8.7e-21 Score=162.38 Aligned_cols=155 Identities=15% Similarity=0.184 Sum_probs=103.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeE--EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|.+|||||||++++.+..+.. ....+..... ...+......+.+||||| +..+..+ ...++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~l-------~~~~~ 71 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPD--YHDPTIEDAYKQQARIDNEPALLDILDTAG--QAEFTAM-------RDQYM 71 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCC--CcCCcccceEEEEEEECCEEEEEEEEeCCC--chhhHHH-------hHHHh
Confidence 489999999999999999999877642 2222222222 223334446799999999 4444333 33447
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhccc--ccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGD--HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~--~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
..+|++|+|+|.++.. .....+ ...+.. ...+.|+++|+||+|+.....+. +....+.+..+ +++++|||++|
T Consensus 72 ~~~d~~ilv~d~~~~~Sf~~~~~~-~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sa~~~ 149 (172)
T cd04141 72 RCGEGFIICYSVTDRHSFQEASEF-KKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFN-CPFFETSAALR 149 (172)
T ss_pred hcCCEEEEEEECCchhHHHHHHHH-HHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhC-CEEEEEecCCC
Confidence 7899999999998755 222222 222221 12579999999999986543221 12223333333 48999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|++++|+++.+.+.
T Consensus 150 ~~v~~~f~~l~~~~~ 164 (172)
T cd04141 150 HYIDDAFHGLVREIR 164 (172)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987654
No 66
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.86 E-value=1.6e-20 Score=163.14 Aligned_cols=158 Identities=16% Similarity=0.183 Sum_probs=107.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
...+|+++|..|||||||+.++.+..+... ..+..+....... ++...+.+.+||||| +..+..+ +..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~-~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G--~~~~~~l-------~~~ 74 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESP-YGYNMGIDYKTTTILLDGRRVKLQLWDTSG--QGRFCTI-------FRS 74 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCcceeEEEEEEEEECCEEEEEEEEeCCC--cHHHHHH-------HHH
Confidence 345899999999999999999998765321 1112222222222 233447899999999 4444433 334
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
+++.+|++|+|+|.++.. +....|+..+ ....++.|+|||+||+|+.....+ .+....+.+..+ .++++|||++|
T Consensus 75 ~~~~ad~illVfD~t~~~Sf~~~~~w~~~i-~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~-~~~~e~SAk~g 152 (189)
T cd04121 75 YSRGAQGIILVYDITNRWSFDGIDRWIKEI-DEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNG-MTFFEVSPLCN 152 (189)
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHH-HHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcC-CEEEEecCCCC
Confidence 578999999999998754 4444444443 333368999999999999653222 223334444444 48999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|++++|.+|.+.+.
T Consensus 153 ~~V~~~F~~l~~~i~ 167 (189)
T cd04121 153 FNITESFTELARIVL 167 (189)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998664
No 67
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.86 E-value=1.1e-20 Score=164.30 Aligned_cols=157 Identities=20% Similarity=0.174 Sum_probs=105.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeE--EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++.+..+... +..+..... ...++.....+.+||||| +..+..+.. .++.
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G--~~~~~~l~~-------~~~~ 70 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQV--YEPTVFENYVHDIFVDGLHIELSLWDTAG--QEEFDRLRS-------LSYA 70 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCc--cCCcceeeeEEEEEECCEEEEEEEEECCC--Chhcccccc-------cccc
Confidence 799999999999999999998876422 222221111 122333446799999999 444333322 3478
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH-------------HHHHHHhcCCCCe
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTDVDE 259 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~-------------~~~~~~~~~~~~~ 259 (348)
.+|++|+|+|.++.. ......|...+.....+.|+++|+||+|+....+... ....+....+..+
T Consensus 71 ~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 150 (189)
T cd04134 71 DTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALR 150 (189)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCE
Confidence 999999999998754 2232223333333336799999999999976433211 1122223334458
Q ss_pred EEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 260 VIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 260 i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
+++|||++|.|++++|.++.+.+..
T Consensus 151 ~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 151 YLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred EEEccCCcCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999987754
No 68
>PLN03118 Rab family protein; Provisional
Probab=99.86 E-value=9.1e-21 Score=167.61 Aligned_cols=165 Identities=19% Similarity=0.176 Sum_probs=108.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
...+|+|+|.+|||||||++++++..+....++.+.+.......++.....+.+|||||. ..+..+ ...++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~~~ 83 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQ--ERFRTL-------TSSYY 83 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHHHH
Confidence 345899999999999999999998876433333333222222233344568999999994 333333 23447
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc--cCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~--~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
+.+|++|+|+|+++.. ......+...+... ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|
T Consensus 84 ~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~-~~~~e~SAk~~ 162 (211)
T PLN03118 84 RNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHG-CLFLECSAKTR 162 (211)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcC-CEEEEEeCCCC
Confidence 8999999999998754 22222233322211 2468999999999997543321 11222222223 47899999999
Q ss_pred CCHHHHHHHHHHhCCCCCCC
Q 018949 269 HGVEDIRDWILTKLPLGPAY 288 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~~ 288 (348)
.|+++++++|.+.+...+..
T Consensus 163 ~~v~~l~~~l~~~~~~~~~~ 182 (211)
T PLN03118 163 ENVEQCFEELALKIMEVPSL 182 (211)
T ss_pred CCHHHHHHHHHHHHHhhhhh
Confidence 99999999999888665443
No 69
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.86 E-value=6e-21 Score=165.75 Aligned_cols=157 Identities=27% Similarity=0.368 Sum_probs=113.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceee-----------------ecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCch
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-----------------VTNKPQTTRHRILGICS--GPEYQMILYDTPGIIE 175 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~-----------------~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~ 175 (348)
..+|+++|+.++|||||+++|++..... .....+.|.......+. ..+..++++||||+.+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 3489999999999999999998543210 00112333333333444 6678999999999532
Q ss_pred hhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHH---
Q 018949 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE--- 252 (348)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~--- 252 (348)
+...+...+..+|++|+|+|+..+...+.......+.. .++|+++|+||+|+. ..+..+...++.
T Consensus 83 ---------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~--~~~p~ivvlNK~D~~-~~~~~~~~~~~~~~l 150 (188)
T PF00009_consen 83 ---------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRE--LGIPIIVVLNKMDLI-EKELEEIIEEIKEKL 150 (188)
T ss_dssp ---------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHH--TT-SEEEEEETCTSS-HHHHHHHHHHHHHHH
T ss_pred ---------eeecccceecccccceeeeecccccccccccccccccc--cccceEEeeeeccch-hhhHHHHHHHHHHHh
Confidence 23445556789999999999999998888888888777 789999999999998 333333333332
Q ss_pred -hcC-----CCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 253 -KFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 253 -~~~-----~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
+.. ...|++++||.+|.|+++|++.|.+.+|
T Consensus 151 ~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 151 LKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 111 1458999999999999999999999876
No 70
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.86 E-value=1.6e-20 Score=163.62 Aligned_cols=157 Identities=24% Similarity=0.242 Sum_probs=105.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc------eeeecCCCCceEEeEEEEEe--------------CCCeeEEEEeCCCCchh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK------LSIVTNKPQTTRHRILGICS--------------GPEYQMILYDTPGIIEK 176 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~------~~~~~~~~~~t~~~~~~~~~--------------~~~~~~~l~DtpG~~~~ 176 (348)
+|+++|++|+|||||+++|++.. .......+++|.......+. ..+..+.+|||||+..
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 69999999999999999998731 11122334555544332222 2367899999999521
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHH----HHHH
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL----EWYE 252 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~----~~~~ 252 (348)
+...+......+|++++|+|++.+.............. .+.|+++|+||+|+.......... ..+.
T Consensus 81 --------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~ 150 (192)
T cd01889 81 --------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQ 150 (192)
T ss_pred --------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHH
Confidence 22334455678999999999988765444333333333 467999999999998544332222 2221
Q ss_pred hc-----CCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 253 KF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 253 ~~-----~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
.. ....+++++||++|.|+++|++++.++++.
T Consensus 151 ~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 151 KTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 11 233589999999999999999999998864
No 71
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.86 E-value=1.3e-20 Score=159.53 Aligned_cols=156 Identities=21% Similarity=0.254 Sum_probs=102.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|.+|||||||++++.+.++... ..+..+.......+ ......+.+|||||. ..+..+ ...++
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~ 73 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLD-SKSTIGVEFATRSIQIDGKTIKAQIWDTAGQ--ERYRAI-------TSAYY 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCccceEEEEEEEEECCEEEEEEEEeCCCh--HHHHHH-------HHHHH
Confidence 4899999999999999999998876532 22333322222222 333357899999994 333322 23446
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
+.++++|+|+|+++.. .....++.........+.|+++|+||+|+...... .+....+....+ .+++++||++|.|
T Consensus 74 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 152 (165)
T cd01868 74 RGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNG-LSFIETSALDGTN 152 (165)
T ss_pred CCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcC-CEEEEEECCCCCC
Confidence 8999999999998543 23333333332222246899999999998753321 112222333233 4799999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
++++++++.+.+
T Consensus 153 v~~l~~~l~~~i 164 (165)
T cd01868 153 VEEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 72
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.86 E-value=1.2e-20 Score=160.01 Aligned_cols=156 Identities=18% Similarity=0.181 Sum_probs=103.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|++|||||||++++.+.++.. ...+..+....... +......+.+|||||. ..+..+ ...++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~--~~~~~~-------~~~~~ 72 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ--ERFRTI-------TSSYY 72 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCc--HhHHHH-------HHHHh
Confidence 389999999999999999999887653 22232222222222 2333467899999994 333322 33457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
+.+|++++|+|+++.. .....++....+....+.|+++|+||+|+.....+ .+....+....+ .+++++||++|.|
T Consensus 73 ~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 151 (166)
T cd01869 73 RGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELG-IPFLETSAKNATN 151 (166)
T ss_pred CcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcC-CeEEEEECCCCcC
Confidence 8999999999998643 33333333332221256899999999998654322 112223333333 4899999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
+++++..|.+.+
T Consensus 152 v~~~~~~i~~~~ 163 (166)
T cd01869 152 VEQAFMTMAREI 163 (166)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 73
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.86 E-value=1e-20 Score=160.89 Aligned_cols=158 Identities=19% Similarity=0.224 Sum_probs=103.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+|+++|.+|||||||+++++...+.. ..++.+..........+.....+.+|||||. ..+..+.. .++..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~-------~~~~~ 72 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQ--EKFGGLRD-------GYYIG 72 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCC--hhhccccH-------HHhcC
Confidence 79999999999999999998765431 1122222222222222344578999999994 33333322 23678
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
+|++|+|+|.++.. .....++....+. ..+.|+++|+||+|+......... ..+... ...+++++||++|.|+++
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~piiiv~nK~Dl~~~~~~~~~-~~~~~~-~~~~~~e~Sa~~~~~v~~ 149 (166)
T cd00877 73 GQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CGNIPIVLCGNKVDIKDRKVKAKQ-ITFHRK-KNLQYYEISAKSNYNFEK 149 (166)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEEchhcccccCCHHH-HHHHHH-cCCEEEEEeCCCCCChHH
Confidence 99999999998654 2233333333222 247999999999999743321222 222222 345799999999999999
Q ss_pred HHHHHHHhCCCCC
Q 018949 274 IRDWILTKLPLGP 286 (348)
Q Consensus 274 L~~~i~~~l~~~~ 286 (348)
+|++|.+.+...+
T Consensus 150 ~f~~l~~~~~~~~ 162 (166)
T cd00877 150 PFLWLARKLLGNP 162 (166)
T ss_pred HHHHHHHHHHhcc
Confidence 9999998776533
No 74
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=1.7e-20 Score=169.55 Aligned_cols=168 Identities=24% Similarity=0.292 Sum_probs=132.8
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+...++|+|.|+||||||||++++++.++. +.++|.||+....+.+..+..+++++||||+.+.+....+..-.+.+..
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpE-vA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPE-VAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCCCc-cCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 345568999999999999999999999987 6899999999999999999999999999999987776666666565655
Q ss_pred hccCccEEEEEecCCCCC----chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~----~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
.-+-.++|+|++|.+... +.+...+.+.... .+.|+++|+||+|..+...+++....+...... ....+++..
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~--f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~ 320 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL--FKAPIVVVINKIDIADEEKLEEIEASVLEEGGE-EPLKISATK 320 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh--cCCCeEEEEecccccchhHHHHHHHHHHhhccc-cccceeeee
Confidence 566789999999998654 4444444444333 348999999999999877776665554444433 457788999
Q ss_pred CCCHHHHHHHHHHhCC
Q 018949 268 GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (348)
+.+++.+...+.....
T Consensus 321 ~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 321 GCGLDKLREEVRKTAL 336 (346)
T ss_pred hhhHHHHHHHHHHHhh
Confidence 9999999888877643
No 75
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.86 E-value=1.4e-20 Score=159.15 Aligned_cols=155 Identities=16% Similarity=0.212 Sum_probs=102.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEe--EEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR--ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|++|||||||++++.+.++.. ...+..+... ...........+.+|||||. ..+..+ ...++.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~ 71 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH--PEYLEV-------RNEFYK 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCcc--HHHHHH-------HHHHhc
Confidence 79999999999999999999987642 2222222222 12223345678999999994 332222 334478
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhccccc-----CCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-----DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~-----~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
.+|++|+|+|.++.. .....++....+... .+.|+++|+||+|+...... ......+....+ .+++++||+
T Consensus 72 ~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 150 (168)
T cd04119 72 DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKG-FKYFETSAC 150 (168)
T ss_pred cCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcC-CeEEEEECC
Confidence 999999999998754 333333333332221 46899999999999732211 111222222233 479999999
Q ss_pred CCCCHHHHHHHHHHhC
Q 018949 267 YGHGVEDIRDWILTKL 282 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l 282 (348)
+|.|+++++++|.+.+
T Consensus 151 ~~~gi~~l~~~l~~~l 166 (168)
T cd04119 151 TGEGVNEMFQTLFSSI 166 (168)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998765
No 76
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.86 E-value=1.5e-20 Score=161.37 Aligned_cols=155 Identities=28% Similarity=0.333 Sum_probs=101.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceee--------ecC------CCCceEEeEEEEE-----eCCCeeEEEEeCCCCchhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSI--------VTN------KPQTTRHRILGIC-----SGPEYQMILYDTPGIIEKK 177 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~--------~~~------~~~~t~~~~~~~~-----~~~~~~~~l~DtpG~~~~~ 177 (348)
+|+++|++|+|||||+++|++..... ..+ ..+.|.......+ +..+..+.+|||||+.+
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-- 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD-- 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh--
Confidence 69999999999999999998743110 111 1233333222222 34567899999999632
Q ss_pred hhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCC
Q 018949 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV 257 (348)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 257 (348)
+ ...+..++..+|++|+|+|++++........+..+.. .++|+++|+||+|+..... ......+....+.
T Consensus 80 ~-------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~ 149 (179)
T cd01890 80 F-------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--NNLEIIPVINKIDLPSADP-ERVKQQIEDVLGL 149 (179)
T ss_pred h-------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--cCCCEEEEEECCCCCcCCH-HHHHHHHHHHhCC
Confidence 2 2234455788999999999987654333222222223 5789999999999865321 1122233332222
Q ss_pred --CeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 258 --DEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 258 --~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
.+++++||++|.|+++|++++.+.++
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 150 DPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred CcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999998774
No 77
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.86 E-value=1.1e-20 Score=160.02 Aligned_cols=155 Identities=19% Similarity=0.209 Sum_probs=103.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|.+|||||||++++....+. ...++++.......+ ......+.+|||||. ..+..+.. .++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~-------~~~ 70 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGT--EQFTAMRD-------LYM 70 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEECCCc--ccchhHHH-------HHH
Confidence 37999999999999999999876543 233444443333223 333566789999994 44444433 346
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+.+|++++|+|.++.. +....++...... ...+.|+++|+||+|+....... .....+....+ .+++++||++|.
T Consensus 71 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 149 (164)
T cd04175 71 KNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWG-CAFLETSAKAKI 149 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhC-CEEEEeeCCCCC
Confidence 8899999999987543 3333344443322 12679999999999997532211 11223333333 489999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++++.++.+.+
T Consensus 150 ~v~~~~~~l~~~l 162 (164)
T cd04175 150 NVNEIFYDLVRQI 162 (164)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 78
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.85 E-value=1.9e-20 Score=161.58 Aligned_cols=157 Identities=22% Similarity=0.268 Sum_probs=111.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec---------------CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT---------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l 181 (348)
+|+++|.+|+|||||+|++++....... ...++|.......+...+..+.+|||||+.+ +
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~--~--- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED--F--- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHH--H---
Confidence 4899999999999999999887654221 1223444444444556678899999999642 1
Q ss_pred HHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHH----HHhc---
Q 018949 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW----YEKF--- 254 (348)
Q Consensus 182 ~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~----~~~~--- 254 (348)
...+..++..+|++++|+|++.+.......+...+.. .+.|+++|+||+|+............ +...
T Consensus 76 ----~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 149 (189)
T cd00881 76 ----SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFI 149 (189)
T ss_pred ----HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHcccccc
Confidence 1224445679999999999988775555555555554 68999999999999864333222222 2221
Q ss_pred ---------CCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 255 ---------TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 255 ---------~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
....+++++||++|.|++++++++.+.++.
T Consensus 150 ~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 150 STKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred chhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 134689999999999999999999998753
No 79
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.85 E-value=1.5e-20 Score=164.89 Aligned_cols=158 Identities=19% Similarity=0.231 Sum_probs=104.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--Ee-CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+|+++|.+|||||||++++++..+.. ...+....+..... +. .....+.+|||||. ..+..+ ...++
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~-~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~~~ 71 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQ-HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ--ERFGGM-------TRVYY 71 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeEEEEEEEEEECCCCEEEEEEEECCCc--hhhhhh-------HHHHh
Confidence 79999999999999999999876542 11222222222222 23 44677999999994 333332 34557
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhccc----ccCCCCEEEEEeccCCCChh-hHHHHHHHHHhcCCCCeEEEecCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPG-EIAKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~----~~~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
+.+|++|+|+|.++.. .....|+...... ...++|+++|+||+|+.... ........+....+..+++++||+
T Consensus 72 ~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak 151 (201)
T cd04107 72 RGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAK 151 (201)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCC
Confidence 8999999999998754 3333332222111 12578999999999997321 112223344444454589999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 018949 267 YGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (348)
+|.|+++++++|.+.+..
T Consensus 152 ~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 152 EGINIEEAMRFLVKNILA 169 (201)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987754
No 80
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.85 E-value=1.1e-20 Score=161.57 Aligned_cols=154 Identities=19% Similarity=0.190 Sum_probs=103.1
Q ss_pred EEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
|+++|.+|||||||++++.+..+.. .+..+....... .++.....+.+|||||. ..+..+.. .++..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~~-------~~~~~ 69 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE--DYVPTVFENYSADVEVDGKPVELGLWDTAGQ--EDYDRLRP-------LSYPD 69 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC--CCCCcEEeeeeEEEEECCEEEEEEEEECCCC--cccchhch-------hhcCC
Confidence 5899999999999999999987642 222232222222 22333457999999994 33333322 34789
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhh-H------------HHHHHHHHhcCCCCeE
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-I------------AKKLEWYEKFTDVDEV 260 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~------------~~~~~~~~~~~~~~~i 260 (348)
+|++|+|+|.++.. +.....|...+.....+.|+++|+||+|+..... . .+....+....+..++
T Consensus 70 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 149 (174)
T smart00174 70 TDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKY 149 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEE
Confidence 99999999998653 3332334444433336899999999999975221 0 1112234444455589
Q ss_pred EEecCCCCCCHHHHHHHHHHhC
Q 018949 261 IPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l 282 (348)
++|||++|.|++++|+.+.+.+
T Consensus 150 ~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 150 LECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EEecCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998765
No 81
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.85 E-value=2.9e-20 Score=158.33 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=103.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEe--EEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR--ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|.+|+|||||++++.+..+... ..+..+... ....++.....+.+||||| +..+..+ ...++
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G--~~~~~~~-------~~~~~ 75 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDTQ-LFHTIGVEFLNKDLEVDGHFVTLQIWDTAG--QERFRSL-------RTPFY 75 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCcC-cCCceeeEEEEEEEEECCeEEEEEEEeCCC--hHHHHHh-------HHHHh
Confidence 4899999999999999999998776421 122222222 2223345557789999999 4443333 33457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc----cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
+.+|++++|+|.++.. .....+........ ..+.|+++|+||+|+............+....+..+++++||++
T Consensus 76 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 155 (170)
T cd04116 76 RGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKD 155 (170)
T ss_pred cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCC
Confidence 8999999999987654 33333333332211 25689999999999864322222233333344455899999999
Q ss_pred CCCHHHHHHHHHHh
Q 018949 268 GHGVEDIRDWILTK 281 (348)
Q Consensus 268 g~gi~eL~~~i~~~ 281 (348)
|.|+.+++..+.+.
T Consensus 156 ~~~v~~~~~~~~~~ 169 (170)
T cd04116 156 ATNVAAAFEEAVRR 169 (170)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998865
No 82
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.85 E-value=1.7e-20 Score=158.14 Aligned_cols=151 Identities=20% Similarity=0.238 Sum_probs=99.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCce--eeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKL--SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++.+... ....++.+.+. ..+...+..+.+|||||. ..+..+ +..++.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~----~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~~ 67 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV----ESFEKGNLSFTAFDMSGQ--GKYRGL-------WEHYYK 67 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce----EEEEECCEEEEEEECCCC--HhhHHH-------HHHHHc
Confidence 489999999999999999998643 22233333222 223456788999999994 333322 334578
Q ss_pred CccEEEEEecCCCCCc--hHHHHHHHhccc--c-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCC
Q 018949 195 NADCIVVLVDACKAPE--RIDEILEEGVGD--H-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAK 266 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~--~~~~~~~~~~~~--~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~ 266 (348)
.+|++|+|+|+++... ....++....+. . ..++|+++|+||+|+.+.....+....+... ....+++++||+
T Consensus 68 ~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~ 147 (162)
T cd04157 68 NIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNAL 147 (162)
T ss_pred cCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCC
Confidence 9999999999987542 222333333322 1 2579999999999997643322222222111 112358999999
Q ss_pred CCCCHHHHHHHHHH
Q 018949 267 YGHGVEDIRDWILT 280 (348)
Q Consensus 267 ~g~gi~eL~~~i~~ 280 (348)
+|.|+++++++|.+
T Consensus 148 ~g~gv~~~~~~l~~ 161 (162)
T cd04157 148 TGEGLDEGVQWLQA 161 (162)
T ss_pred CCCchHHHHHHHhc
Confidence 99999999999865
No 83
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.85 E-value=1.9e-20 Score=160.64 Aligned_cols=154 Identities=19% Similarity=0.178 Sum_probs=102.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||+.++++..+. ..+..+...... ..++.....+.+||||| +..+..+. ..++.
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~~-------~~~~~ 71 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAG--QEDYDRLR-------PLSYP 71 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CcCCCcceeeeEEEEEECCEEEEEEEEECCC--chhhhhhh-------hhhcC
Confidence 7999999999999999999987653 222223222222 22333446789999999 44433332 23578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhh-H------------HHHHHHHHhcCCCCe
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-I------------AKKLEWYEKFTDVDE 259 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~------------~~~~~~~~~~~~~~~ 259 (348)
.+|++|+|+|.++.. ......|...+.....+.|+++|+||+|+..... . ......+....+..+
T Consensus 72 ~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 151 (174)
T cd01871 72 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 151 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcE
Confidence 999999999998754 2222233333333235799999999999964221 0 111222333344458
Q ss_pred EEEecCCCCCCHHHHHHHHHHh
Q 018949 260 VIPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 260 i~~vSA~~g~gi~eL~~~i~~~ 281 (348)
+++|||++|.|++++|+.+.+.
T Consensus 152 ~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 152 YLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred EEEecccccCCHHHHHHHHHHh
Confidence 9999999999999999998764
No 84
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.85 E-value=1.7e-20 Score=159.67 Aligned_cols=157 Identities=20% Similarity=0.204 Sum_probs=104.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecC-CCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.+|+++|.+|||||||++++.+.++..... +.+.+..............+.+|||||. ..+.. ....+++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~-------~~~~~~~ 75 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ--ESFRS-------ITRSYYR 75 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc--HHHHH-------HHHHHhc
Confidence 489999999999999999999887653322 2222222233333444568999999993 33222 2345578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++++|+|+++.. .....++....+...++.|+++|+||+|+...... ......+....+ .+++++||++|.|+
T Consensus 76 ~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i 154 (168)
T cd01866 76 GAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHG-LIFMETSAKTASNV 154 (168)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 999999999998643 33333433333322357999999999999743221 112222222233 47999999999999
Q ss_pred HHHHHHHHHhC
Q 018949 272 EDIRDWILTKL 282 (348)
Q Consensus 272 ~eL~~~i~~~l 282 (348)
++++.++.+.+
T Consensus 155 ~~~~~~~~~~~ 165 (168)
T cd01866 155 EEAFINTAKEI 165 (168)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 85
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.85 E-value=2.8e-20 Score=157.32 Aligned_cols=154 Identities=18% Similarity=0.189 Sum_probs=102.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+|+++|.+|||||||++++++..+.... +..+.+.......++.....+.+||||| +..+..+ ...+++.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~~-------~~~~~~~ 72 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAG--QERFQTM-------HASYYHK 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCC--chhhhhh-------hHHHhCC
Confidence 7999999999999999999987764221 1111122222223344557789999999 4343332 3445789
Q ss_pred ccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 196 ADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 196 ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
+|++++|+|++++.. .... +...++....+.|+++|+||+|+.... ..+ ...+....+ .+++++||++|.|+++
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~-~~~~~~~~~-~~~~~~Sa~~~~gv~~ 148 (161)
T cd04124 73 AHACILVFDVTRKITYKNLSK-WYEELREYRPEIPCIVVANKIDLDPSV-TQK-KFNFAEKHN-LPLYYVSAADGTNVVK 148 (161)
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhCCCCcEEEEEECccCchhH-HHH-HHHHHHHcC-CeEEEEeCCCCCCHHH
Confidence 999999999987542 2223 333333323579999999999985322 111 222222223 4899999999999999
Q ss_pred HHHHHHHhCC
Q 018949 274 IRDWILTKLP 283 (348)
Q Consensus 274 L~~~i~~~l~ 283 (348)
+++.+.+.+.
T Consensus 149 l~~~l~~~~~ 158 (161)
T cd04124 149 LFQDAIKLAV 158 (161)
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 86
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.85 E-value=3.2e-20 Score=156.79 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=100.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
||+++|.+|||||||++++....+.. ...|+.... ..+......+.+|||||. ..+. ..+..++..+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~---~~pt~g~~~-~~~~~~~~~~~l~D~~G~--~~~~-------~~~~~~~~~a 68 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT---TIPTIGFNV-ETVEYKNISFTVWDVGGQ--DKIR-------PLWRHYFQNT 68 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc---cCCCCCcce-EEEEECCEEEEEEECCCC--HhHH-------HHHHHHhcCC
Confidence 79999999999999999997665532 122222211 234456788999999994 3322 2234568999
Q ss_pred cEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCCCCC
Q 018949 197 DCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 197 d~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g~g 270 (348)
|++|+|+|+++.. .....++...+.. ...+.|+++|+||+|+.......+....+.. ......++++||++|.|
T Consensus 69 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~g 148 (159)
T cd04150 69 QGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDG 148 (159)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCC
Confidence 9999999998643 3334444444432 1146899999999999754322222222211 11223578999999999
Q ss_pred HHHHHHHHHH
Q 018949 271 VEDIRDWILT 280 (348)
Q Consensus 271 i~eL~~~i~~ 280 (348)
+++++++|.+
T Consensus 149 v~~~~~~l~~ 158 (159)
T cd04150 149 LYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 87
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.85 E-value=2.6e-20 Score=159.91 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=103.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||++++....+. ...| |+.... ..+..+...+.+|||||. ..+.. .+..++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~--~~~~-t~~~~~-~~~~~~~~~l~l~D~~G~--~~~~~-------~~~~~~ 78 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV--TTIP-TIGFNV-ETVTYKNISFTVWDVGGQ--DKIRP-------LWRHYY 78 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC--CcCC-ccccce-EEEEECCEEEEEEECCCC--hhhHH-------HHHHHh
Confidence 3458999999999999999999765543 2222 222211 223456788999999994 33322 234557
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHH---hcCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~---~~~~~~~i~~vSA~~ 267 (348)
+.+|++|+|+|+++.. .....++...+... ..+.|++||+||+|+.+.....+....+. .......++++||++
T Consensus 79 ~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 158 (175)
T smart00177 79 TNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATS 158 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCC
Confidence 9999999999998753 44444555544331 24689999999999975422222222221 111223567899999
Q ss_pred CCCHHHHHHHHHHhC
Q 018949 268 GHGVEDIRDWILTKL 282 (348)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (348)
|.|+++++++|.+.+
T Consensus 159 g~gv~e~~~~l~~~~ 173 (175)
T smart00177 159 GDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998764
No 88
>PRK11058 GTPase HflX; Provisional
Probab=99.85 E-value=2.5e-20 Score=180.25 Aligned_cols=163 Identities=23% Similarity=0.262 Sum_probs=114.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
++|+++|++|||||||+|+|++.++. +++.+++|.+.....+...+ ..+.+|||||+.......+...+ ..+...+.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f-~~tl~~~~ 275 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAF-KATLQETR 275 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHH-HHHHHHhh
Confidence 58999999999999999999998876 67888899887766655444 37899999997443223333333 33556678
Q ss_pred CccEEEEEecCCCCCchHH-HHHHHhccccc-CCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 195 NADCIVVLVDACKAPERID-EILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~~~~-~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
.+|++++|+|++++..... ..+...+.... .+.|+++|+||+|+....... ..... .+...++++||++|.|++
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~--~~~~~--~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPR--IDRDE--ENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHH--HHHHh--cCCCceEEEeCCCCCCHH
Confidence 9999999999988653222 12222222221 479999999999997532111 11111 122235889999999999
Q ss_pred HHHHHHHHhCCC
Q 018949 273 DIRDWILTKLPL 284 (348)
Q Consensus 273 eL~~~i~~~l~~ 284 (348)
+|+++|.+.+..
T Consensus 352 eL~e~I~~~l~~ 363 (426)
T PRK11058 352 LLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHhhh
Confidence 999999988753
No 89
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.85 E-value=1.9e-20 Score=157.90 Aligned_cols=156 Identities=18% Similarity=0.195 Sum_probs=103.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+|+++|++|||||||++++.+.++.... ++.+.........+......+.+|||||. ..+.. ....+++.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~--~~~~~-------~~~~~~~~ 72 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQ--ERFRS-------VTRSYYRG 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcch--HHHHH-------hHHHHhcC
Confidence 7999999999999999999988764321 11111122222223334467899999994 33222 23445789
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
+|++++|+|+++.. .....++.........+.|+++|+||+|+...... ......+....+ .+++++||+++.|++
T Consensus 73 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~ 151 (161)
T cd04113 73 AAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENG-LLFLETSALTGENVE 151 (161)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcC-CEEEEEECCCCCCHH
Confidence 99999999998754 23333333322222368999999999999754322 112222333333 589999999999999
Q ss_pred HHHHHHHHhC
Q 018949 273 DIRDWILTKL 282 (348)
Q Consensus 273 eL~~~i~~~l 282 (348)
++++++.+.+
T Consensus 152 ~~~~~~~~~~ 161 (161)
T cd04113 152 EAFLKCARSI 161 (161)
T ss_pred HHHHHHHHhC
Confidence 9999998753
No 90
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.85 E-value=7.1e-20 Score=159.56 Aligned_cols=166 Identities=27% Similarity=0.335 Sum_probs=114.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh-hhhHHH---HHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDSM---MMKN 188 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~l~~~---~~~~ 188 (348)
..++|+++|.+|+|||||+|++++.+ ...+++.+++|+....... +..+.+|||||+..... ...... ....
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 45589999999999999999999976 4556677777776543332 36799999999642111 001111 1222
Q ss_pred HHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCC--CCeEEEecCC
Q 018949 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD--VDEVIPVSAK 266 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~--~~~i~~vSA~ 266 (348)
.......++++++|+|++.+.......+...+.. .+.|+++++||+|+....+.......+..... ..+++++||+
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~ 177 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSL 177 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcC
Confidence 2233345678999999887765555555555554 57899999999999876544433333322221 3578999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 018949 267 YGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (348)
+|.|++++++.|.+.+.+
T Consensus 178 ~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 178 KKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CCCCHHHHHHHHHHHhcC
Confidence 999999999999987754
No 91
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.85 E-value=3.1e-20 Score=160.31 Aligned_cols=157 Identities=16% Similarity=0.168 Sum_probs=105.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||++++....+....++.+. ....+..++..+.+||||| +..+.. .+..++
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~----~~~~~~~~~~~~~i~D~~G--q~~~~~-------~~~~~~ 82 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF----NVETVEYKNISFTVWDVGG--QDKIRP-------LWRHYF 82 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCccccCCcce----eEEEEEECCEEEEEEECCC--CHHHHH-------HHHHHh
Confidence 345899999999999999999987655322222221 1223455678899999999 433332 244557
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~~ 267 (348)
+.+|++|+|+|+++.. .....++...+.. ...+.|++||+||+|+.......+....+.-. .....++++||++
T Consensus 83 ~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~ 162 (181)
T PLN00223 83 QNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATS 162 (181)
T ss_pred ccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCC
Confidence 8999999999998653 2333344444332 11478999999999997654433333332211 1122467899999
Q ss_pred CCCHHHHHHHHHHhCC
Q 018949 268 GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (348)
|+|+++++++|.+.+.
T Consensus 163 g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 163 GEGLYEGLDWLSNNIA 178 (181)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999988764
No 92
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.85 E-value=1e-20 Score=164.58 Aligned_cols=155 Identities=21% Similarity=0.199 Sum_probs=102.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++.+..+.. ..++++..... ..+......+.+|||||. ..+..+ ...++.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~ 69 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE--TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQ--EEYTAL-------RDQWIR 69 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchHhhEEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHHHHH
Confidence 48999999999999999999877642 23333322222 223333456899999994 333333 234578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc---cCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~---~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
.+|++++|+|.++.. .....++..+.... ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|
T Consensus 70 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~SAk~~ 148 (190)
T cd04144 70 EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLG-CEFIEASAKTN 148 (190)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhC-CEEEEecCCCC
Confidence 999999999997654 23333333222211 2568999999999996433221 11222333333 37999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|+++++.++.+.+.
T Consensus 149 ~~v~~l~~~l~~~l~ 163 (190)
T cd04144 149 VNVERAFYTLVRALR 163 (190)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987653
No 93
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.85 E-value=6.8e-21 Score=162.63 Aligned_cols=159 Identities=30% Similarity=0.362 Sum_probs=109.7
Q ss_pred EEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccE
Q 018949 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198 (348)
Q Consensus 120 i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~ 198 (348)
++|++|||||||+|+|.+.+. .+...+++|.......+..+ +..+.+|||||+.+.... ...+...+...+..+|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASE--GRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhc--CCCccHHHHHHHhccCE
Confidence 589999999999999999876 35677888888777777676 889999999997432111 01111233445678999
Q ss_pred EEEEecCCCCC-----c---hHHHHHHHhcccc-------cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEe
Q 018949 199 IVVLVDACKAP-----E---RIDEILEEGVGDH-------KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPV 263 (348)
Q Consensus 199 iv~VvD~~~~~-----~---~~~~~~~~~~~~~-------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~v 263 (348)
+++|+|+++.. . ....+........ ..+.|+++|+||+|+....................+++++
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEE
Confidence 99999998762 1 1112222222111 1368999999999998765544332122223334579999
Q ss_pred cCCCCCCHHHHHHHHHHh
Q 018949 264 SAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 264 SA~~g~gi~eL~~~i~~~ 281 (348)
||+++.|++++++++...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
No 94
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.85 E-value=2.2e-20 Score=161.25 Aligned_cols=156 Identities=17% Similarity=0.144 Sum_probs=107.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|.+|||||||++++.+..+. ..+.+|...... ..++.....+.+|||+| ++.+..+. ..+
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f~--~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG--~e~~~~~~-------~~~ 73 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSG--SPYYDNVR-------PLS 73 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCCC--CccCCceeeeeEEEEEECCEEEEEEEEECCC--chhhHhhh-------hhh
Confidence 348999999999999999999988764 223333322222 22344457899999999 54444432 345
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCCh------------hhH-HHHHHHHHhcCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP------------GEI-AKKLEWYEKFTDV 257 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~------------~~~-~~~~~~~~~~~~~ 257 (348)
++.+|++++|+|.++.. ......|...++...++.|+++|+||+|+... ..+ .+....+.+..+.
T Consensus 74 ~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 153 (182)
T cd04172 74 YPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGA 153 (182)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCC
Confidence 88999999999998754 33223344444433367999999999998531 011 2234455555565
Q ss_pred CeEEEecCCCCCC-HHHHHHHHHHh
Q 018949 258 DEVIPVSAKYGHG-VEDIRDWILTK 281 (348)
Q Consensus 258 ~~i~~vSA~~g~g-i~eL~~~i~~~ 281 (348)
.++++|||++|.| ++++|..+.+.
T Consensus 154 ~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 154 ATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CEEEECCcCCCCCCHHHHHHHHHHH
Confidence 5899999999998 99999998874
No 95
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.85 E-value=2.6e-20 Score=161.19 Aligned_cols=155 Identities=19% Similarity=0.138 Sum_probs=105.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||++++.+..+..+.++. ......+..++..+.+|||||.. .+.. .+..++
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~D~~G~~--~~~~-------~~~~~~ 82 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQ----HPTSEELAIGNIKFTTFDLGGHQ--QARR-------LWKDYF 82 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcccCCcc----ccceEEEEECCEEEEEEECCCCH--HHHH-------HHHHHh
Confidence 5569999999999999999999998764332222 22223344567889999999952 2222 233557
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc----------CCCCeE
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF----------TDVDEV 260 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~----------~~~~~i 260 (348)
..+|++++|+|+++.. .....++...+... ..+.|+++|+||+|+.......+....+... .....+
T Consensus 83 ~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i 162 (184)
T smart00178 83 PEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEV 162 (184)
T ss_pred CCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEE
Confidence 8999999999998753 22333444443321 1578999999999986433333333332110 134468
Q ss_pred EEecCCCCCCHHHHHHHHHHh
Q 018949 261 IPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~ 281 (348)
++|||++|.|+++++++|.+.
T Consensus 163 ~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 163 FMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEeecccCCChHHHHHHHHhh
Confidence 999999999999999999864
No 96
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.85 E-value=3e-20 Score=156.42 Aligned_cols=152 Identities=20% Similarity=0.232 Sum_probs=100.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.+|||||||++++.+..+....++.+.+ ...+.......+.+|||||.. .+. ..+..++..+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~l~i~D~~G~~--~~~-------~~~~~~~~~~ 68 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFN---VEMLQLEKHLSLTVWDVGGQE--KMR-------TVWKCYLENT 68 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcc---eEEEEeCCceEEEEEECCCCH--hHH-------HHHHHHhccC
Confidence 4899999999999999999988764332222222 111222345789999999952 222 2233457899
Q ss_pred cEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHH--hcC--CCCeEEEecCCCCC
Q 018949 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--KFT--DVDEVIPVSAKYGH 269 (348)
Q Consensus 197 d~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~--~~~--~~~~i~~vSA~~g~ 269 (348)
|++|+|+|++++. .....++...++.. ..+.|+++|+||+|+.......+....+. ... ...++++|||++|+
T Consensus 69 ~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (160)
T cd04156 69 DGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGE 148 (160)
T ss_pred CEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCC
Confidence 9999999998754 33344444444331 15799999999999964322222222221 111 12368999999999
Q ss_pred CHHHHHHHHHH
Q 018949 270 GVEDIRDWILT 280 (348)
Q Consensus 270 gi~eL~~~i~~ 280 (348)
|+++++++|.+
T Consensus 149 gv~~~~~~i~~ 159 (160)
T cd04156 149 GLAEAFRKLAS 159 (160)
T ss_pred ChHHHHHHHhc
Confidence 99999999864
No 97
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=3.1e-20 Score=165.82 Aligned_cols=159 Identities=14% Similarity=0.053 Sum_probs=108.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
...+|+++|.+|||||||++++.+..+.. .+.+|...... ..++...+.+.+|||+| ++.+..+. ..
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~--~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG--~e~~~~~~-------~~ 80 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPE--TYVPTVFENYTAGLETEEQRVELSLWDTSG--SPYYDNVR-------PL 80 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCC--CcCCceeeeeEEEEEECCEEEEEEEEeCCC--chhhHHHH-------HH
Confidence 34589999999999999999999877642 22223222222 22344567899999999 54444332 34
Q ss_pred hccCccEEEEEecCCCCCchH--HHHHHHhcccccCCCCEEEEEeccCCCCh------------hhH-HHHHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAPERI--DEILEEGVGDHKDKLPILLVLNKKDLIKP------------GEI-AKKLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~--~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~------------~~~-~~~~~~~~~~~~ 256 (348)
++..+|++|+|+|.++...-. ...|...+.....+.|+|+|+||+|+... ..+ .+....+....+
T Consensus 81 ~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~ 160 (232)
T cd04174 81 CYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLG 160 (232)
T ss_pred HcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcC
Confidence 578999999999998755322 12333333333357899999999998631 111 223455555556
Q ss_pred CCeEEEecCCCCC-CHHHHHHHHHHhCC
Q 018949 257 VDEVIPVSAKYGH-GVEDIRDWILTKLP 283 (348)
Q Consensus 257 ~~~i~~vSA~~g~-gi~eL~~~i~~~l~ 283 (348)
..++++|||++|. |++++|..+...+.
T Consensus 161 ~~~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 161 AEVYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred CCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 5578999999998 89999999887653
No 98
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=2.5e-20 Score=160.40 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=105.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++.+..+. ..+.+|...... ..++.....+.+|||+| +..+..+. ..+++
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G--~~~~~~~~-------~~~~~ 71 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYP--ETYVPTVFENYTASFEIDEQRIELSLWDTSG--SPYYDNVR-------PLCYP 71 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--CCcCCceEEEEEEEEEECCEEEEEEEEECCC--chhhhhcc-------hhhcC
Confidence 7999999999999999999988764 223333222222 22344457799999999 44444332 23578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCCh------------hhH-HHHHHHHHhcCCCCe
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP------------GEI-AKKLEWYEKFTDVDE 259 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~------------~~~-~~~~~~~~~~~~~~~ 259 (348)
.+|++|+|+|.++.. ......|...++...++.|+++|+||+|+.+. ..+ .+....+....+..+
T Consensus 72 ~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~ 151 (178)
T cd04131 72 DSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEI 151 (178)
T ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCE
Confidence 999999999998755 33222344444443467999999999998541 011 223444555556557
Q ss_pred EEEecCCCCCC-HHHHHHHHHHh
Q 018949 260 VIPVSAKYGHG-VEDIRDWILTK 281 (348)
Q Consensus 260 i~~vSA~~g~g-i~eL~~~i~~~ 281 (348)
+++|||++|+| ++++|..+.+.
T Consensus 152 ~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 152 YLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred EEECccCcCCcCHHHHHHHHHHH
Confidence 99999999995 99999998874
No 99
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.85 E-value=2.1e-20 Score=158.02 Aligned_cols=154 Identities=21% Similarity=0.192 Sum_probs=102.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++.+..+.. ....+...... ..++.....+.+|||||. ..+..+.. .++.
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~-------~~~~ 71 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGT--EQFASMRD-------LYIK 71 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC--CCCCchhheEEEEEEECCEEEEEEEEECCCc--ccccchHH-------HHHh
Confidence 79999999999999999999877642 22223222222 222333456889999994 44444432 3467
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
.+|++++|+|.++.. .....++....+.. ..++|+++|+||+|+.....+. .....+....+ .+++++||++|.|
T Consensus 72 ~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 150 (163)
T cd04176 72 NGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWG-CPFMETSAKSKTM 150 (163)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhC-CEEEEecCCCCCC
Confidence 899999999998754 33333333332221 1579999999999986432221 11233333333 4889999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
+++++.++.+.+
T Consensus 151 v~~l~~~l~~~l 162 (163)
T cd04176 151 VNELFAEIVRQM 162 (163)
T ss_pred HHHHHHHHHHhc
Confidence 999999998765
No 100
>PTZ00369 Ras-like protein; Provisional
Probab=99.85 E-value=2.3e-20 Score=162.13 Aligned_cols=158 Identities=19% Similarity=0.166 Sum_probs=104.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|.+|||||||++++.+..+.. ....|....... .++.....+.+|||||. ..+..+ ...+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~l-------~~~~ 73 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFID--EYDPTIEDSYRKQCVIDEETCLLDILDTAGQ--EEYSAM-------RDQY 73 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCc--CcCCchhhEEEEEEEECCEEEEEEEEeCCCC--ccchhh-------HHHH
Confidence 4589999999999999999999877642 222222222222 23444567889999994 334433 2235
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++.+|++++|+|+++.. .....++....+.. ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|
T Consensus 74 ~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~-~~~~e~Sak~~ 152 (189)
T PTZ00369 74 MRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFG-IPFLETSAKQR 152 (189)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhC-CEEEEeeCCCC
Confidence 78999999999998754 23333333332221 1578999999999986533221 11222222223 48999999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 018949 269 HGVEDIRDWILTKLPL 284 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (348)
.|+++++.+|.+.+..
T Consensus 153 ~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 153 VNVDEAFYELVREIRK 168 (189)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999877643
No 101
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.85 E-value=3e-20 Score=160.88 Aligned_cols=157 Identities=20% Similarity=0.198 Sum_probs=104.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE-EEE-e-CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL-GIC-S-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~-~~~-~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+|+++|.+|+|||||++++.+..+. ..+..+...... .+. . .....+.+||||| +..+..+ ...++
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~~~ 70 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAG--QEEYDRL-------RPLSY 70 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC--CCCCCeeeeeeEEEEEecCCcEEEEEEEECCC--chhHHHH-------HHHhC
Confidence 7999999999999999999988764 223333222222 222 2 3356799999999 4333333 22347
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhh-----HHHHHHHHHhcCCCCeEEEecCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-----IAKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-----~~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
..+|++++|+|.++.. ......|.........+.|+++|+||+|+..... .......+....+..+++++||+
T Consensus 71 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 150 (187)
T cd04132 71 PDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAK 150 (187)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCC
Confidence 8999999999998654 2222223333332236799999999999865321 12223334444454478999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 018949 267 YGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (348)
+|.|+++++..+.+.+..
T Consensus 151 ~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 151 TMENVEEVFDTAIEEALK 168 (187)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987654
No 102
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.85 E-value=3.8e-20 Score=157.27 Aligned_cols=156 Identities=17% Similarity=0.183 Sum_probs=104.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEE-eEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH-RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+|+++|.+|||||||++++.+.++... .+.+... .....+......+.+|||||..+ +. ..+..++..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~--~~-------~~~~~~~~~ 70 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN--VPRVLPEITIPADVTPERVPTTIVDTSSRPQ--DR-------ANLAAEIRK 70 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc--CCCcccceEeeeeecCCeEEEEEEeCCCchh--hh-------HHHhhhccc
Confidence 799999999999999999998776422 2222111 12223344567899999999532 11 123344689
Q ss_pred ccEEEEEecCCCCCchHH--HHHHHhcccccCCCCEEEEEeccCCCChhhH---HHHHHHHH-hcCCCCeEEEecCCCCC
Q 018949 196 ADCIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVLNKKDLIKPGEI---AKKLEWYE-KFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~--~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~~~~~~-~~~~~~~i~~vSA~~g~ 269 (348)
+|++++|+|++++..-.. ..|...++....+.|+++|+||+|+.+.... ......+. ......+++++||++|.
T Consensus 71 ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 150 (166)
T cd01893 71 ANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLI 150 (166)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEecccccc
Confidence 999999999987553322 3444444433357999999999999764432 22222222 22222479999999999
Q ss_pred CHHHHHHHHHHhCC
Q 018949 270 GVEDIRDWILTKLP 283 (348)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (348)
|++++|+.+.+.+.
T Consensus 151 ~v~~lf~~~~~~~~ 164 (166)
T cd01893 151 NVSEVFYYAQKAVL 164 (166)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999987653
No 103
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.85 E-value=2.6e-20 Score=159.16 Aligned_cols=155 Identities=18% Similarity=0.189 Sum_probs=103.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|++|+|||||++++.+.++. ....++........ +....+.+.+|||||. ..+..++. .++.
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~~-------~~~~ 70 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQ--EDYDRLRP-------LSYP 70 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCc--cccccccc-------ccCC
Confidence 7999999999999999999988764 22333333222222 2333456889999994 33333322 3478
Q ss_pred CccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-------------HHHHHHHhcCCCCe
Q 018949 195 NADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTDVDE 259 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~~~~~~~~~~~~~ 259 (348)
.+|++++|+|.++... .....+...++....+.|+++|+||+|+.+..... +....+....+..+
T Consensus 71 ~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 150 (174)
T cd04135 71 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHC 150 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCE
Confidence 9999999999987542 23233344333334789999999999986532211 12233334445557
Q ss_pred EEEecCCCCCCHHHHHHHHHHhC
Q 018949 260 VIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 260 i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
+++|||++|.|++++|+.+.+.+
T Consensus 151 ~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 151 YVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred EEEecCCcCCCHHHHHHHHHHHh
Confidence 99999999999999999988754
No 104
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.85 E-value=3.5e-20 Score=158.32 Aligned_cols=156 Identities=22% Similarity=0.256 Sum_probs=104.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCce-EEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t-~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+|+++|.+|||||||++++++..+.. .+..|. ...... .+......+.+||||| +..+..+ ...++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~~~ 70 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDK--NYKATIGVDFEMERFEILGVPFSLQLWDTAG--QERFKCI-------ASTYY 70 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEECCEEEEEEEEeCCC--hHHHHhh-------HHHHh
Confidence 79999999999999999999987642 222222 222222 2333356799999999 4443333 33457
Q ss_pred cCccEEEEEecCCCC--CchHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH---HHHHHHHHhcCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKA--PERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI---AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~--~~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
+.+|++++|+|+++. ......|+....+.. ....|+++|+||+|+.+.... ......+....+ .+++++||++
T Consensus 71 ~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~ 149 (170)
T cd04108 71 RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ-AEYWSVSALS 149 (170)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcC-CeEEEEECCC
Confidence 899999999999763 344444444433322 134679999999998654321 222233333333 3789999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|++++|..|.+.+.+
T Consensus 150 g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 150 GENVREFFFRVAALTFE 166 (170)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887654
No 105
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.85 E-value=3.8e-20 Score=159.92 Aligned_cols=157 Identities=23% Similarity=0.288 Sum_probs=103.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCce-EEeE--EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t-~~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+|+++|..|||||||++++.+..+.. .+..|. .... ...+......+.+|||+| +..+..+ ...++
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~--~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G--~~~~~~~-------~~~~~ 70 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDE--DYIQTLGVNFMEKTISIRGTEITFSIWDLGG--QREFINM-------LPLVC 70 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceEEEEEEEEECCEEEEEEEEeCCC--chhHHHh-------hHHHC
Confidence 79999999999999999999887642 222222 2222 222333347799999999 4443333 23457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCCh----h--hHHHHHHHHHhcCCCCeEEEecC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP----G--EIAKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~----~--~~~~~~~~~~~~~~~~~i~~vSA 265 (348)
+.+|++++|+|.++.. .....|+....+......| ++|+||+|+... . ...+....+....+ .+++++||
T Consensus 71 ~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~e~SA 148 (182)
T cd04128 71 NDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-APLIFCST 148 (182)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-CEEEEEeC
Confidence 8999999999998754 3333444433332223456 688999999521 1 12223334444444 58999999
Q ss_pred CCCCCHHHHHHHHHHhCCCCC
Q 018949 266 KYGHGVEDIRDWILTKLPLGP 286 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~~~ 286 (348)
++|.|++++|+++.+.+...+
T Consensus 149 k~g~~v~~lf~~l~~~l~~~~ 169 (182)
T cd04128 149 SHSINVQKIFKIVLAKAFDLP 169 (182)
T ss_pred CCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999998775533
No 106
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.85 E-value=6.2e-20 Score=154.71 Aligned_cols=155 Identities=18% Similarity=0.191 Sum_probs=101.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+|+++|++|+|||||++++.+..+.. ..++.+.+.......+......+.+|||||. ..+..+ ....++.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~~~ 72 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQ--ERFRTL-------TSSYYRG 72 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCc--hhhhhh-------hHHHhCC
Confidence 79999999999999999999887643 2333333333232333444578999999994 332222 2344689
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
+|++++|+|.++.. .....++....+.. ..+.|+++|+||+|+.......+....+.... ..+++++||++|.|++
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~ 151 (161)
T cd01863 73 AQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKH-NMLFIETSAKTRDGVQ 151 (161)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHc-CCEEEEEecCCCCCHH
Confidence 99999999997644 22222222221111 26799999999999973321111222222233 3479999999999999
Q ss_pred HHHHHHHHh
Q 018949 273 DIRDWILTK 281 (348)
Q Consensus 273 eL~~~i~~~ 281 (348)
++++.+.+.
T Consensus 152 ~~~~~~~~~ 160 (161)
T cd01863 152 QAFEELVEK 160 (161)
T ss_pred HHHHHHHHh
Confidence 999998865
No 107
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.85 E-value=8.4e-21 Score=170.09 Aligned_cols=160 Identities=27% Similarity=0.297 Sum_probs=123.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCee-EEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQ-MILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
.|++||.||+|||||+|+|...+.. +.+++.||..+..+.+.+++.. +.+.|.||+++.+ ++.+.+.-.+++++++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpk-Va~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GA--h~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPK-VAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGA--HMNKGLGYKFLRHIER 274 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCc-ccccceeeeccccceeeccccceeEeccCccccccc--cccCcccHHHHHHHHh
Confidence 6999999999999999999999986 7899999999999998887665 9999999998754 3444445567778899
Q ss_pred ccEEEEEecCCCCC----chHHHHHHHhccc---ccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCC
Q 018949 196 ADCIVVLVDACKAP----ERIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 196 ad~iv~VvD~~~~~----~~~~~~~~~~~~~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
|+.++||+|.+... -.+...+...+.. ...+.|.++|+||+|++..+ ...+..+.+......++++||+++
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae--~~~l~~L~~~lq~~~V~pvsA~~~ 352 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE--KNLLSSLAKRLQNPHVVPVSAKSG 352 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH--HHHHHHHHHHcCCCcEEEeeeccc
Confidence 99999999998762 1222222222222 12678999999999997432 223455666666657999999999
Q ss_pred CCHHHHHHHHHHh
Q 018949 269 HGVEDIRDWILTK 281 (348)
Q Consensus 269 ~gi~eL~~~i~~~ 281 (348)
+|+.+|++.|.+.
T Consensus 353 egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 353 EGLEELLNGLREL 365 (366)
T ss_pred cchHHHHHHHhhc
Confidence 9999999988754
No 108
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.85 E-value=4.4e-20 Score=156.18 Aligned_cols=154 Identities=13% Similarity=0.157 Sum_probs=102.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|++|+|||||++++.+..+.. ...+..........+. .....+.+||||| +..+..+ ...++.
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g--~~~~~~~-------~~~~~~ 71 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHS-SHISTIGVDFKMKTIEVDGIKVRIQIWDTAG--QERYQTI-------TKQYYR 71 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEeCCC--cHhHHhh-------HHHHhc
Confidence 69999999999999999999877642 2222222222222223 3346789999999 4333333 334578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++++|+|.++.. +....++.........+.|+++|+||+|+.....+ .+....+.+..+ .+++++||++|.|+
T Consensus 72 ~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v 150 (161)
T cd04117 72 RAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYG-MDFFETSACTNSNI 150 (161)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 999999999998653 33333333322222246899999999999754322 223333444444 58999999999999
Q ss_pred HHHHHHHHHh
Q 018949 272 EDIRDWILTK 281 (348)
Q Consensus 272 ~eL~~~i~~~ 281 (348)
+++|.+|.+.
T Consensus 151 ~~~f~~l~~~ 160 (161)
T cd04117 151 KESFTRLTEL 160 (161)
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 109
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.85 E-value=5.2e-20 Score=159.17 Aligned_cols=160 Identities=19% Similarity=0.214 Sum_probs=102.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE-eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
..+|+++|.+|||||||++++.+..+....++.+.+........ +..+..+.+|||||. ..+..+ +..++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~~~ 73 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ--EKLRPL-------WKSYT 73 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCc--HhHHHH-------HHHHh
Confidence 45899999999999999999998765422122222222221111 335678999999994 333222 33457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHH--hcC--CCCeEEEecCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--KFT--DVDEVIPVSAK 266 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~--~~~--~~~~i~~vSA~ 266 (348)
..+|++++|+|+++.. .....++....... ..++|+++|+||+|+............+. ... ...+++++||+
T Consensus 74 ~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 153 (183)
T cd04152 74 RCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAI 153 (183)
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecc
Confidence 8999999999998753 22222333332211 15789999999999874322222211111 111 12368999999
Q ss_pred CCCCHHHHHHHHHHhCC
Q 018949 267 YGHGVEDIRDWILTKLP 283 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~ 283 (348)
+|.|+++++++|.+.+.
T Consensus 154 ~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 154 IGEGLQEGLEKLYEMIL 170 (183)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 99999999999987763
No 110
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.85 E-value=4.5e-20 Score=155.70 Aligned_cols=156 Identities=20% Similarity=0.208 Sum_probs=102.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|++|+|||||++++.+.++.. ...+..+.......+. .....+.+|||||. ..+.. .....+.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~-------~~~~~~~ 71 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSE-QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ--ERFRS-------ITSSYYR 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCh--HHHHH-------HHHHHhC
Confidence 79999999999999999999887642 2222222222222222 33367899999993 33222 2334478
Q ss_pred CccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++++|+|++++.. ....++.........+.|+++|+||+|+...... .+....+....+ .+++++||++|.|+
T Consensus 72 ~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i 150 (164)
T smart00175 72 GAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHG-LPFFETSAKTNTNV 150 (164)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence 9999999999987542 2233333332222257999999999998753221 112222333334 47999999999999
Q ss_pred HHHHHHHHHhCC
Q 018949 272 EDIRDWILTKLP 283 (348)
Q Consensus 272 ~eL~~~i~~~l~ 283 (348)
++++++|.+.+.
T Consensus 151 ~~l~~~i~~~~~ 162 (164)
T smart00175 151 EEAFEELAREIL 162 (164)
T ss_pred HHHHHHHHHHHh
Confidence 999999988653
No 111
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.85 E-value=3.1e-20 Score=157.87 Aligned_cols=153 Identities=20% Similarity=0.185 Sum_probs=101.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEE--eEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH--RILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|+|||||+++|++.++.. ....+... ............+.+|||||... +..+.. ..++
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~--~~~~~~-------~~~~ 70 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPT--EYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEE--YDRLRP-------LSYP 70 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeEEEEEECCEEEEEEEEeCCCccc--ccccch-------hhcC
Confidence 79999999999999999999887631 12222222 22223334456799999999532 222211 2357
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH------------HHHHHHHHhcCCCCeE
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI------------AKKLEWYEKFTDVDEV 260 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~------------~~~~~~~~~~~~~~~i 260 (348)
.+|++++|+|+++.. ......+...+.....+.|+++|+||+|+...... ......+....+..++
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 150 (171)
T cd00157 71 NTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGY 150 (171)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEE
Confidence 899999999998644 22223333333333357999999999999765432 1222333334444489
Q ss_pred EEecCCCCCCHHHHHHHHHH
Q 018949 261 IPVSAKYGHGVEDIRDWILT 280 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~ 280 (348)
+++||++|.|+++++++|.+
T Consensus 151 ~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 151 MECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEeecCCCCCHHHHHHHHhh
Confidence 99999999999999999875
No 112
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.84 E-value=3.8e-20 Score=160.53 Aligned_cols=157 Identities=17% Similarity=0.158 Sum_probs=103.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+|+++|.+|||||||++++.+..+... .++.+.+.......+......+.+|||||. ..+.. ....+++.
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~--~~~~~-------~~~~~~~~ 72 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQ--ERFRS-------LNNSYYRG 72 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc--HHHHh-------hHHHHccC
Confidence 799999999999999999998876421 122222121222223344567899999994 33332 23445789
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
+|++++|+|.++.. .....++.........+.|+++|+||+|+.....+. .....+....+. +++++||++|.|++
T Consensus 73 ~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~~~~i~ 151 (188)
T cd04125 73 AHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNI-PFFETSAKQSINVE 151 (188)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCC-eEEEEeCCCCCCHH
Confidence 99999999998654 333333333322222468999999999987543221 122223333343 79999999999999
Q ss_pred HHHHHHHHhCC
Q 018949 273 DIRDWILTKLP 283 (348)
Q Consensus 273 eL~~~i~~~l~ 283 (348)
+++.++.+.+.
T Consensus 152 ~~f~~l~~~~~ 162 (188)
T cd04125 152 EAFILLVKLII 162 (188)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 113
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.84 E-value=7.1e-20 Score=154.81 Aligned_cols=155 Identities=19% Similarity=0.263 Sum_probs=101.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceE-EeEE--EEE-eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRIL--GIC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~-~~~~--~~~-~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+|+++|.+|||||||++++.+........+..++. .... ..+ ......+.+||||| +..+..+ ...+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~~ 72 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAG--QELYSDM-------VSNY 72 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCC--HHHHHHH-------HHHH
Confidence 79999999999999999998653211223333332 2111 112 23457899999999 4333322 3345
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH-HHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|.++.. .....++ ..+.....+.|+++|+||+|+.+..++.. ....+....+ .+++++||++|.
T Consensus 73 ~~~~d~ii~v~d~~~~~s~~~~~~~~-~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 150 (164)
T cd04101 73 WESPSVFILVYDVSNKASFENCSRWV-NKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQ-LKFFKTSALRGV 150 (164)
T ss_pred hCCCCEEEEEEECcCHHHHHHHHHHH-HHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 78999999999998653 2223333 33322225689999999999975432221 1222333333 478999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|++++++.+.+.+
T Consensus 151 gi~~l~~~l~~~~ 163 (164)
T cd04101 151 GYEEPFESLARAF 163 (164)
T ss_pred ChHHHHHHHHHHh
Confidence 9999999998754
No 114
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.84 E-value=5.7e-20 Score=157.56 Aligned_cols=153 Identities=18% Similarity=0.215 Sum_probs=103.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
..+|+++|++|+|||||++++.+.++....++.+.+ ...+..++..+.+|||||. ..+. ..+..++.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~l~D~~G~--~~~~-------~~~~~~~~ 81 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSN----VEEIVYKNIRFLMWDIGGQ--ESLR-------SSWNTYYT 81 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc----eEEEEECCeEEEEEECCCC--HHHH-------HHHHHHhh
Confidence 358999999999999999999887664332222222 2234455788999999994 2222 22345578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYG 268 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g 268 (348)
.+|++++|+|+++.. .....++...+... ..+.|+++++||+|+.......+....+.. .....+++++||++|
T Consensus 82 ~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g 161 (174)
T cd04153 82 NTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTG 161 (174)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCC
Confidence 999999999998753 22334444444331 146899999999998753222222222221 112247899999999
Q ss_pred CCHHHHHHHHHH
Q 018949 269 HGVEDIRDWILT 280 (348)
Q Consensus 269 ~gi~eL~~~i~~ 280 (348)
.|+++++++|.+
T Consensus 162 ~gi~e~~~~l~~ 173 (174)
T cd04153 162 EGLPEGLDWIAS 173 (174)
T ss_pred CCHHHHHHHHhc
Confidence 999999999875
No 115
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.84 E-value=5.3e-20 Score=154.95 Aligned_cols=151 Identities=21% Similarity=0.241 Sum_probs=99.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|++|+|||||++++....+... .+ +.... ...+...+..+.+|||||.. .+.. .+..++..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~--~~-t~~~~-~~~~~~~~~~~~i~Dt~G~~--~~~~-------~~~~~~~~~ 67 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT--IP-TIGFN-VETVTYKNLKFQVWDLGGQT--SIRP-------YWRCYYSNT 67 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc--CC-ccCcC-eEEEEECCEEEEEEECCCCH--HHHH-------HHHHHhcCC
Confidence 589999999999999999977665321 11 21111 12344567889999999952 2222 234557899
Q ss_pred cEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCCCCCC
Q 018949 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKYGHG 270 (348)
Q Consensus 197 d~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~~g~g 270 (348)
|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+.+.....+....+... ....+++++||++|.|
T Consensus 68 ~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd04151 68 DAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEG 147 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCC
Confidence 9999999998643 22234444443321 1478999999999997543222222222111 1123699999999999
Q ss_pred HHHHHHHHHH
Q 018949 271 VEDIRDWILT 280 (348)
Q Consensus 271 i~eL~~~i~~ 280 (348)
+++++++|.+
T Consensus 148 i~~l~~~l~~ 157 (158)
T cd04151 148 LDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 116
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.84 E-value=4.8e-20 Score=163.57 Aligned_cols=154 Identities=18% Similarity=0.261 Sum_probs=103.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.+|||||||++++++.++.. ..+...... .......+.+.+||||| +..+..+. ..+++.+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~--~~~Tig~~~--~~~~~~~~~l~iwDt~G--~e~~~~l~-------~~~~~~a 68 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD--TVSTVGGAF--YLKQWGPYNISIWDTAG--REQFHGLG-------SMYCRGA 68 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--CCCccceEE--EEEEeeEEEEEEEeCCC--cccchhhH-------HHHhccC
Confidence 79999999999999999999988742 122111111 12233457799999999 44444432 2347899
Q ss_pred cEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCC-------------------hhhH-HHHHHHHHhc
Q 018949 197 DCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIK-------------------PGEI-AKKLEWYEKF 254 (348)
Q Consensus 197 d~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~-------------------~~~~-~~~~~~~~~~ 254 (348)
|++|+|+|.++.. .....++..+.+....+.|+|+|+||+|+.. ...+ .+....+...
T Consensus 69 d~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~ 148 (220)
T cd04126 69 AAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKR 148 (220)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHH
Confidence 9999999998753 4444555554443335789999999999965 1111 1122222222
Q ss_pred CC-------------CCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 255 TD-------------VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 255 ~~-------------~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
.+ ..++++|||++|.||+++|..+.+.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 149 INKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred hCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 22 147999999999999999999987664
No 117
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.84 E-value=7e-20 Score=162.44 Aligned_cols=157 Identities=18% Similarity=0.166 Sum_probs=103.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC---CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+|+++|.+|||||||+++|.+..+.. ...+..+.+.....+.. ....+.+||||| +..+..+ ...++
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~-~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G--~~~~~~l-------~~~~~ 71 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGK-SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGG--QSIGGKM-------LDKYI 71 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCC--cHHHHHH-------HHHHh
Confidence 79999999999999999999877642 22222233333222222 357899999999 4333333 23447
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc---cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~---~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
+.+|++|+|+|+++.. .....|+..+.+.. ..+.|+++|+||+|+...... ......+....+ .+++++||++
T Consensus 72 ~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~-~~~~~iSAkt 150 (215)
T cd04109 72 YGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANG-MESCLVSAKT 150 (215)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEECCC
Confidence 8999999999998653 22323322222211 134689999999999743221 222333333344 4789999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|++++|+++.+.+..
T Consensus 151 g~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 151 GDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987754
No 118
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.84 E-value=7.8e-20 Score=154.15 Aligned_cols=153 Identities=20% Similarity=0.293 Sum_probs=101.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+|+++|.+|+|||||++++.+..+... ..+........ ..+. .....+.+||||| +..+..+ ...+
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G--~~~~~~~-------~~~~ 71 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKD-YKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG--QEEFDAI-------TKAY 71 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-CCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCc--hHHHHHh-------HHHH
Confidence 799999999999999999998765421 11222222212 2222 3457899999999 4443333 3345
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
++.+|++++|+|+++.. .....++... .....+.|+++|+||+|+.....+. +....+....+. +++++||++|.
T Consensus 72 ~~~~~~~v~v~d~~~~~s~~~l~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 149 (162)
T cd04106 72 YRGAQACILVFSTTDRESFEAIESWKEKV-EAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQL-PLFRTSVKDDF 149 (162)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHH-HHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 78999999999997654 2223333222 2222579999999999997543221 222333333443 89999999999
Q ss_pred CHHHHHHHHHHh
Q 018949 270 GVEDIRDWILTK 281 (348)
Q Consensus 270 gi~eL~~~i~~~ 281 (348)
|+++++++|...
T Consensus 150 ~v~~l~~~l~~~ 161 (162)
T cd04106 150 NVTELFEYLAEK 161 (162)
T ss_pred CHHHHHHHHHHh
Confidence 999999998764
No 119
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.84 E-value=8.3e-20 Score=157.77 Aligned_cols=157 Identities=17% Similarity=0.169 Sum_probs=103.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|++|||||||++++....+... ..|+.. ....+...+..+.+|||||. ..+.. .+..++
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~---~~T~~~-~~~~~~~~~~~~~l~D~~G~--~~~~~-------~~~~~~ 82 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVTT---IPTIGF-NVETVEYKNLKFTMWDVGGQ--DKLRP-------LWRHYY 82 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc---CCcccc-ceEEEEECCEEEEEEECCCC--HhHHH-------HHHHHh
Confidence 345899999999999999999976555322 122222 22234557789999999994 33222 234558
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~~ 267 (348)
..+|++|+|+|+++.. .....++...+... ..+.|++||+||.|+.......+....+... .....++++||++
T Consensus 83 ~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~t 162 (182)
T PTZ00133 83 QNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATT 162 (182)
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCC
Confidence 8999999999997643 33334444443321 1468999999999987533222222222211 1123567899999
Q ss_pred CCCHHHHHHHHHHhCC
Q 018949 268 GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (348)
|.|+++++++|.+.+.
T Consensus 163 g~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 163 AQGLYEGLDWLSANIK 178 (182)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987654
No 120
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.84 E-value=1.1e-19 Score=157.76 Aligned_cols=156 Identities=22% Similarity=0.189 Sum_probs=105.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|++|||||||++++.+..+....++. ......+..++..+.+|||||.. .+. ..+..++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~----~~~~~~i~~~~~~~~l~D~~G~~--~~~-------~~~~~~~ 84 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTL----HPTSEELTIGNIKFKTFDLGGHE--QAR-------RLWKDYF 84 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCcc----CcceEEEEECCEEEEEEECCCCH--HHH-------HHHHHHh
Confidence 4568999999999999999999987754222222 22223445567889999999942 222 2234557
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHh--------------cCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK--------------FTD 256 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~--------------~~~ 256 (348)
..+|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+.......+....+.. ...
T Consensus 85 ~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T cd00879 85 PEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIR 164 (190)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCce
Confidence 8999999999998642 22334444444322 156999999999999753333333333321 112
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
..++++|||++|+|+++++++|.+.+
T Consensus 165 ~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 165 PIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred eEEEEEeEecCCCChHHHHHHHHhhC
Confidence 24689999999999999999998653
No 121
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.84 E-value=7.5e-20 Score=157.23 Aligned_cols=157 Identities=17% Similarity=0.156 Sum_probs=102.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--Ee----------CCCeeEEEEeCCCCchhhhhhhH
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CS----------GPEYQMILYDTPGIIEKKIHMLD 182 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~----------~~~~~~~l~DtpG~~~~~~~~l~ 182 (348)
..+|+++|.+|||||||++++.+.++.. ...+....+..... +. .....+.+||||| +..+..+
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~~- 79 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNP-KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAG--QERFRSL- 79 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCC--hHHHHHH-
Confidence 3589999999999999999999876642 11121111121111 11 2346799999999 4433332
Q ss_pred HHHHHHHHhhccCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCC
Q 018949 183 SMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVD 258 (348)
Q Consensus 183 ~~~~~~~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~ 258 (348)
...+++.+|++++|+|+++.. .....|+...... ...+.|+++|+||+|+...... .+....+....+ .
T Consensus 80 ------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~-~ 152 (180)
T cd04127 80 ------TTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYG-I 152 (180)
T ss_pred ------HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcC-C
Confidence 344578999999999998644 2233333332221 1247899999999999753221 122233333334 4
Q ss_pred eEEEecCCCCCCHHHHHHHHHHhC
Q 018949 259 EVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 259 ~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
+++++||++|.|+++++++|.+.+
T Consensus 153 ~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 153 PYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 799999999999999999998754
No 122
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.84 E-value=1.1e-19 Score=154.78 Aligned_cols=158 Identities=24% Similarity=0.254 Sum_probs=102.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|++|+|||||++++.+..+... ..+..+..... ..+......+.+|||||. ..+..+ ...+++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~--~~~~~~-------~~~~~~ 71 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQ-YKATIGADFLTKEVTVDDKLVTLQIWDTAGQ--ERFQSL-------GVAFYR 71 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcC-cCCccceEEEEEEEEECCEEEEEEEEeCCCh--HHHHhH-------HHHHhc
Confidence 799999999999999999998875421 11211222222 223333466889999994 333222 334578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc----cCCCCEEEEEeccCCCChhh-HHHHHHHHHhcCCCCeEEEecCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~----~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
.+|++|+|+|++++. .....+........ ..++|+++|+||+|+..+.. ..+....+....+..+++++||++
T Consensus 72 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 151 (172)
T cd01862 72 GADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKE 151 (172)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCC
Confidence 999999999998654 22222222222221 13799999999999974221 122223333444556899999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|++++++++.+.+..
T Consensus 152 ~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 152 AINVEQAFETIARKALE 168 (172)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999876543
No 123
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.84 E-value=3e-20 Score=154.00 Aligned_cols=160 Identities=21% Similarity=0.218 Sum_probs=116.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.+|.|+|.+|||||||+|++...++.... .+.+..-......++..-+.+++|||+| ++++.++...+ ++
T Consensus 10 LKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAG--QERFqsLg~aF-------YR 80 (210)
T KOG0394|consen 10 LKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAG--QERFQSLGVAF-------YR 80 (210)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEeccc--HHHhhhcccce-------ec
Confidence 48999999999999999999988875321 1222222222334455567899999999 88888876544 78
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhccccc----CCCCEEEEEeccCCCChh---hHHHHHHHHHhcCCCCeEEEecC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK----DKLPILLVLNKKDLIKPG---EIAKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~----~~~p~ivv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~i~~vSA 265 (348)
.+|++++|+|..... +.+..|-.+.+.... ...|+||++||+|+.... .............+..|+|++||
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA 160 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA 160 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence 999999999987543 555555555444322 457999999999997632 22344455556666779999999
Q ss_pred CCCCCHHHHHHHHHHhCCC
Q 018949 266 KYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~ 284 (348)
+...|+++.|..+.+.+..
T Consensus 161 K~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 161 KEATNVDEAFEEIARRALA 179 (210)
T ss_pred cccccHHHHHHHHHHHHHh
Confidence 9999999999999886644
No 124
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.84 E-value=7.6e-20 Score=160.28 Aligned_cols=157 Identities=17% Similarity=0.193 Sum_probs=103.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|++|||||||++++.+..+.. ...+.......... +......+.+|||||. ..+..+ ...+
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~--~~~~~~-------~~~~ 75 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSG-SYITTIGVDFKIRTVEINGERVKLQIWDTAGQ--ERFRTI-------TSTY 75 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCccccceeEEEEEEECCEEEEEEEEeCCCc--hhHHHH-------HHHH
Confidence 4589999999999999999999877642 11111111221122 2233467899999994 333322 3445
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|+++.. +....++.. +.......|++||+||+|+.....+ ......+....+ .+++++||++|.
T Consensus 76 ~~~a~~iilv~D~~~~~s~~~~~~~~~~-i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~ 153 (199)
T cd04110 76 YRGTHGVIVVYDVTNGESFVNVKRWLQE-IEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMG-ISLFETSAKENI 153 (199)
T ss_pred hCCCcEEEEEEECCCHHHHHHHHHHHHH-HHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEECCCCc
Confidence 78899999999998754 223333333 3333367899999999999754322 122222322333 579999999999
Q ss_pred CHHHHHHHHHHhCC
Q 018949 270 GVEDIRDWILTKLP 283 (348)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (348)
|+++++++|.+.+.
T Consensus 154 gi~~lf~~l~~~~~ 167 (199)
T cd04110 154 NVEEMFNCITELVL 167 (199)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987664
No 125
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.84 E-value=7.8e-20 Score=153.70 Aligned_cols=151 Identities=21% Similarity=0.288 Sum_probs=103.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.+|||||||++++.+.......++.+.+. ..+...+..+.+|||||. ..+..+ ...++..+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~D~~G~--~~~~~~-------~~~~~~~~ 67 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNV----ETVEYKNVSFTVWDVGGQ--DKIRPL-------WKHYYENT 67 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcce----EEEEECCEEEEEEECCCC--hhhHHH-------HHHHhccC
Confidence 58999999999999999999987432223333222 223445788999999994 332222 33456889
Q ss_pred cEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCCCCC
Q 018949 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 197 d~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g~g 270 (348)
|++++|+|++.+. .....++....... ..+.|+++|+||+|+.......+....+.. .....+++++||++|.|
T Consensus 68 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd00878 68 NGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDG 147 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCC
Confidence 9999999998753 33333444333321 257999999999999865433333333322 22345899999999999
Q ss_pred HHHHHHHHHH
Q 018949 271 VEDIRDWILT 280 (348)
Q Consensus 271 i~eL~~~i~~ 280 (348)
+++++++|..
T Consensus 148 v~~~~~~l~~ 157 (158)
T cd00878 148 LDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 126
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.84 E-value=1.2e-19 Score=151.29 Aligned_cols=153 Identities=21% Similarity=0.233 Sum_probs=101.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+|+++|.+|+|||||++++.+.+.... .++.+.+..............+.+||+||. ..+. ......++.
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~-------~~~~~~~~~ 72 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQ--ERFR-------SITPSYYRG 72 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCCh--HHHH-------HHHHHHhcC
Confidence 799999999999999999999887543 122222222222233334578999999994 2222 234455788
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCC-hhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIK-PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
+|++++|+|+++.. .....++.........+.|+++|+||+|+.. ..........+.... ..+++.+||+++.|++
T Consensus 73 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~sa~~~~~i~ 151 (159)
T cd00154 73 AHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKEN-GLLFFETSAKTGENVE 151 (159)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHc-CCeEEEEecCCCCCHH
Confidence 99999999998743 2333333333332224699999999999962 221222223333332 3589999999999999
Q ss_pred HHHHHHH
Q 018949 273 DIRDWIL 279 (348)
Q Consensus 273 eL~~~i~ 279 (348)
+++++|.
T Consensus 152 ~~~~~i~ 158 (159)
T cd00154 152 ELFQSLA 158 (159)
T ss_pred HHHHHHh
Confidence 9999886
No 127
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.84 E-value=1.2e-19 Score=152.54 Aligned_cols=155 Identities=22% Similarity=0.326 Sum_probs=101.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|+|||||++++.+..+.. ...+.++.......+ ......+.+||||| +..+..+ ...++.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g--~~~~~~~-------~~~~~~ 71 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAG--QERYHAL-------GPIYYR 71 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCc--hHHHHHh-------hHHHhc
Confidence 79999999999999999999887642 222222222222222 23345799999999 4333333 223467
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++++|+|.+++. +....++.........++|+++|+||+|+...... ......+....+ .+++++||++|.|+
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~gi 150 (162)
T cd04123 72 DADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVG-AKHFETSAKTGKGI 150 (162)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 899999999997654 22233333322222247899999999999753322 112222222233 47899999999999
Q ss_pred HHHHHHHHHhC
Q 018949 272 EDIRDWILTKL 282 (348)
Q Consensus 272 ~eL~~~i~~~l 282 (348)
+++++++.+.+
T Consensus 151 ~~~~~~l~~~~ 161 (162)
T cd04123 151 EELFLSLAKRM 161 (162)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 128
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.84 E-value=1e-19 Score=158.40 Aligned_cols=155 Identities=17% Similarity=0.248 Sum_probs=102.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeE---EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI---LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+|+++|.+|||||||++++++..+.. ..+..+..... ...+......+.+|||||. ..+..+ ...++
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~--~~~~~~-------~~~~~ 71 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLV-GPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS--ERYEAM-------SRIYY 71 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCC-cCcccceeeEEEEEEEEECCEEEEEEEEECCCc--hhhhhh-------hHhhc
Confidence 79999999999999999999887642 22333332221 2223333456789999994 333333 22347
Q ss_pred cCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChh----hH-HHHHHHHHhcCCCCeEEEecCC
Q 018949 194 INADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EI-AKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~----~~-~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
..+|++++|+|.++... .... +...+.....+.|+++|+||+|+.... .+ ......+....+ .+++++||+
T Consensus 72 ~~~d~iilv~d~~~~~s~~~~~~-~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~ 149 (193)
T cd04118 72 RGAKAAIVCYDLTDSSSFERAKF-WVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-AQHFETSSK 149 (193)
T ss_pred CCCCEEEEEEECCCHHHHHHHHH-HHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC-CeEEEEeCC
Confidence 79999999999976542 2223 333333333579999999999986432 11 111222222233 478999999
Q ss_pred CCCCHHHHHHHHHHhCC
Q 018949 267 YGHGVEDIRDWILTKLP 283 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~ 283 (348)
+|.|+++|++++.+.+.
T Consensus 150 ~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 150 TGQNVDELFQKVAEDFV 166 (193)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999997663
No 129
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.83 E-value=1e-19 Score=155.61 Aligned_cols=156 Identities=20% Similarity=0.193 Sum_probs=101.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|++|||||||++++.+..+.. .+..+....... .+......+.+|||||. ..+..+. ..++
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~-------~~~~ 70 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQ--EDYDRLR-------PLSY 70 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccccceEEEEEECCEEEEEEEEeCCCc--hhhhhcc-------cccc
Confidence 389999999999999999999877642 222222222222 23334467899999994 3322221 1346
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-------------HHHHHHHhcCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTDVD 258 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~~~~~~~~~~~~ 258 (348)
..+|++++|+|.++.. ......+...++....+.|+++|+||+|+....... .....+....+..
T Consensus 71 ~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~ 150 (175)
T cd01870 71 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAF 150 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCc
Confidence 8999999999997643 222222333333323579999999999986532211 1112222333445
Q ss_pred eEEEecCCCCCCHHHHHHHHHHhC
Q 018949 259 EVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 259 ~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
++++|||++|.|++++|+++.+.+
T Consensus 151 ~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 151 GYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EEEEeccccCcCHHHHHHHHHHHh
Confidence 899999999999999999998654
No 130
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.83 E-value=1.3e-19 Score=158.73 Aligned_cols=162 Identities=16% Similarity=0.149 Sum_probs=104.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++++.++.. .+..++.......+...+ ..+.+|||||. ..+..+ ...++.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~--~~~~~~-------~~~~~~ 69 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEP--KYRRTVEEMHRKEYEVGGVSLTLDILDTSGS--YSFPAM-------RKLSIQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchhhheeEEEEECCEEEEEEEEECCCc--hhhhHH-------HHHHhh
Confidence 58999999999999999999877642 233333222222333333 67899999994 333322 223578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCCh-hhHHH-HHHHHHhcCCCCeEEEecCCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP-GEIAK-KLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~-~~~~~-~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
.+|++++|+|+++.. +....++..+.... ..++|+++|+||+|+... ..+.. ............+++++||++|.
T Consensus 70 ~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~ 149 (198)
T cd04147 70 NSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNE 149 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCC
Confidence 999999999998653 22222222222211 157999999999999652 21111 11111111122478999999999
Q ss_pred CHHHHHHHHHHhCCCCCCCC
Q 018949 270 GVEDIRDWILTKLPLGPAYY 289 (348)
Q Consensus 270 gi~eL~~~i~~~l~~~~~~~ 289 (348)
|++++++++.+.+...++..
T Consensus 150 gv~~l~~~l~~~~~~~~~~~ 169 (198)
T cd04147 150 NVLEVFKELLRQANLPYNLS 169 (198)
T ss_pred CHHHHHHHHHHHhhcccccc
Confidence 99999999999887555543
No 131
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=8.9e-20 Score=153.21 Aligned_cols=161 Identities=19% Similarity=0.174 Sum_probs=118.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..||+++|..|||||.|+.++.+..+... ..+.|.--......+..+...+++|||+| |++++ ..+.++
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAG--QERFr-------tit~sy 78 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAG--QERFR-------TITSSY 78 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccc--cHHHh-------hhhHhh
Confidence 344899999999999999999999877521 11111111112233456667899999999 66655 446788
Q ss_pred ccCccEEEEEecCCCC--CchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKA--PERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
++.|++||+|+|.+.. +.....|+.+.-+....++|.++|+||+|+.+...+. +....+....+..+++++||+++.
T Consensus 79 YR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~ 158 (205)
T KOG0084|consen 79 YRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDST 158 (205)
T ss_pred ccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCcc
Confidence 9999999999999864 4666677666655555778999999999998765442 233456666666459999999999
Q ss_pred CHHHHHHHHHHhCC
Q 018949 270 GVEDIRDWILTKLP 283 (348)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (348)
|+++.|..|...+.
T Consensus 159 NVe~~F~~la~~lk 172 (205)
T KOG0084|consen 159 NVEDAFLTLAKELK 172 (205)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999887664
No 132
>PLN03110 Rab GTPase; Provisional
Probab=99.83 E-value=1.1e-19 Score=161.19 Aligned_cols=158 Identities=16% Similarity=0.186 Sum_probs=105.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|++|||||||+++|.+..+.. ...+......... .+......+.+||||| +..+..+ ...+
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~-~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G--~~~~~~~-------~~~~ 81 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAG--QERYRAI-------TSAY 81 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCC--cHHHHHH-------HHHH
Confidence 3489999999999999999999887642 2222222222222 2334456899999999 4333332 3345
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
++.++++|+|+|.++.. +....|+.........+.|+++|+||+|+.....+ .+....+....+ .+++++||++|.
T Consensus 82 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~-~~~~e~SA~~g~ 160 (216)
T PLN03110 82 YRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEG-LSFLETSALEAT 160 (216)
T ss_pred hCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 78999999999997644 23333333332222257999999999998653322 122333333333 589999999999
Q ss_pred CHHHHHHHHHHhCC
Q 018949 270 GVEDIRDWILTKLP 283 (348)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (348)
|++++++.|.+.+.
T Consensus 161 ~v~~lf~~l~~~i~ 174 (216)
T PLN03110 161 NVEKAFQTILLEIY 174 (216)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987663
No 133
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.83 E-value=1.6e-19 Score=150.10 Aligned_cols=157 Identities=26% Similarity=0.377 Sum_probs=106.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|.+|+|||||++++.+.. ......+.++.......+..++ ..+.+|||||. ..+..+.......+...+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~~~~~~~~~~~~i 78 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ--EDYRAIRRLYYRAVESSL 78 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCc--ccchHHHHHHHhhhhEEE
Confidence 389999999999999999999988 4456667777777766555566 78999999994 344444444434444444
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
...|++++|+|...........+..... .+.|+++|+||+|+............+. ..+..+++++||++|.|+.+
T Consensus 79 ~~~d~~~~v~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~-~~~~~~~~~~sa~~~~gv~~ 154 (161)
T TIGR00231 79 RVFDIVILVLDVEEILEKQTKEIIHHAE---SNVPIILVGNKIDLRDAKLKTHVAFLFA-KLNGEPIIPLSAETGKNIDS 154 (161)
T ss_pred EEEEEeeeehhhhhHhHHHHHHHHHhcc---cCCcEEEEEEcccCCcchhhHHHHHHHh-hccCCceEEeecCCCCCHHH
Confidence 4555555555554433233333333322 2789999999999986542222223333 33445799999999999999
Q ss_pred HHHHHH
Q 018949 274 IRDWIL 279 (348)
Q Consensus 274 L~~~i~ 279 (348)
++++|.
T Consensus 155 ~~~~l~ 160 (161)
T TIGR00231 155 AFKIVE 160 (161)
T ss_pred HHHHhh
Confidence 999874
No 134
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.83 E-value=1.5e-19 Score=153.75 Aligned_cols=155 Identities=17% Similarity=0.207 Sum_probs=102.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++.+..+. .....++....... +......+.+|||||. ..+..+.. .+++
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~~-------~~~~ 71 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGT--EQFTAMRE-------LYIK 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCc--ccchhhhH-------HHHh
Confidence 7999999999999999999987753 22233333222222 3334467899999994 34443333 3367
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
.++++++|+|.++.. +....+.....+. ...+.|+++|+||+|+...... ......+....+..+++++||++|.|
T Consensus 72 ~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~ 151 (168)
T cd04177 72 SGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTN 151 (168)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCC
Confidence 899999999998643 2233322222211 1257999999999999754322 11222333334445899999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
++++++++.+.+
T Consensus 152 i~~~f~~i~~~~ 163 (168)
T cd04177 152 VDEVFIDLVRQI 163 (168)
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 135
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.83 E-value=1.7e-19 Score=151.99 Aligned_cols=153 Identities=20% Similarity=0.212 Sum_probs=102.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|+|||||++++++..+. ....+++...... ..+.....+.+|||||. ..+... ...+++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~--~~~~~~-------~~~~~~ 70 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQ--EDYAAI-------RDNYHR 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCCh--hhhhHH-------HHHHhh
Confidence 7999999999999999999987654 2333333332222 23344577999999994 333322 334578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChh--hHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
.+|++++|+|.+++. .....++....+.. ..++|+++|+||+|+.... ..... ..+....+ .+++++||++|.
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~-~~~~~~~~-~~~~~~Sa~~~~ 148 (164)
T cd04139 71 SGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEA-ANLARQWG-VPYVETSAKTRQ 148 (164)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHH-HHHHHHhC-CeEEEeeCCCCC
Confidence 899999999987643 22334433333321 2579999999999997621 22222 22222233 489999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|++++++.+.+.+
T Consensus 149 gi~~l~~~l~~~~ 161 (164)
T cd04139 149 NVEKAFYDLVREI 161 (164)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 136
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.83 E-value=1.7e-19 Score=160.11 Aligned_cols=156 Identities=13% Similarity=0.107 Sum_probs=107.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeE--EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|.+|||||||++++.+..+.. .+.+|..... ...++...+.+.+|||+| +..+..++. .++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~--~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G--~e~~~~l~~-------~~~ 70 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPG--SYVPTVFENYTASFEIDKRRIELNMWDTSG--SSYYDNVRP-------LAY 70 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--ccCCccccceEEEEEECCEEEEEEEEeCCC--cHHHHHHhH-------Hhc
Confidence 379999999999999999999877642 2333322222 223344457799999999 444444432 347
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhh------------H-HHHHHHHHhcCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTDVD 258 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~------------~-~~~~~~~~~~~~~~ 258 (348)
..+|++|+|+|.++.. ......|...++....+.|+|+|+||+|+..... + .+....+.+..+..
T Consensus 71 ~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~ 150 (222)
T cd04173 71 PDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAV 150 (222)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCC
Confidence 9999999999998764 3333334444444446799999999999964211 1 12334455556656
Q ss_pred eEEEecCCCCCC-HHHHHHHHHHhC
Q 018949 259 EVIPVSAKYGHG-VEDIRDWILTKL 282 (348)
Q Consensus 259 ~i~~vSA~~g~g-i~eL~~~i~~~l 282 (348)
++++|||+++.| |+++|..+....
T Consensus 151 ~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 151 SYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred EEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 899999999985 999999987754
No 137
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.83 E-value=2.3e-19 Score=152.40 Aligned_cols=157 Identities=19% Similarity=0.196 Sum_probs=102.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|++|||||||++++.+..+.. ...+..+.......+... ...+.+|||||. ..+.. ....+
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~--~~~~~-------~~~~~ 76 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ--ERFRS-------ITQSY 76 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCc--HHHHH-------HHHHH
Confidence 3589999999999999999998765431 122222222332223333 366889999994 22222 23345
Q ss_pred ccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|.++... ....++..+......+.|+++|+||+|+....++. .....+..... .+++++||++|.
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~~~ 155 (169)
T cd04114 77 YRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQD-MYYLETSAKESD 155 (169)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEeeCCCCC
Confidence 789999999999976532 22233322222122578999999999997544322 22333433333 579999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|++++++.|.+.+
T Consensus 156 gv~~l~~~i~~~~ 168 (169)
T cd04114 156 NVEKLFLDLACRL 168 (169)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998753
No 138
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.83 E-value=1.2e-19 Score=155.27 Aligned_cols=152 Identities=19% Similarity=0.224 Sum_probs=102.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|+|||||++++.+..+. ..+..|..+..... ++.....+.+|||||. ..+..+. ..+++
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~-------~~~~~ 70 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYP--TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQ--DEFDKLR-------PLCYP 70 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEECCCC--hhhcccc-------ccccC
Confidence 7999999999999999999887654 33444443333222 3333467889999994 3333332 23478
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhh------------H-HHHHHHHHhcCCCCe
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTDVDE 259 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~------------~-~~~~~~~~~~~~~~~ 259 (348)
.+|++|+|+|.++.. ......|...+.....+.|+++|+||+|+..... + .+....+....+..+
T Consensus 71 ~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~ 150 (173)
T cd04130 71 DTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACE 150 (173)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCe
Confidence 999999999998754 2333333433333235799999999999864321 1 112233344445568
Q ss_pred EEEecCCCCCCHHHHHHHHH
Q 018949 260 VIPVSAKYGHGVEDIRDWIL 279 (348)
Q Consensus 260 i~~vSA~~g~gi~eL~~~i~ 279 (348)
++++||++|.|++++++.+.
T Consensus 151 ~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 151 YIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred EEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999875
No 139
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.83 E-value=1.4e-19 Score=149.64 Aligned_cols=140 Identities=17% Similarity=0.211 Sum_probs=91.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|++|||||||+|++.+..+. ... |.. +... -.+|||||... .. ..........++.+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~-t~~-----~~~~---~~~iDt~G~~~----~~-~~~~~~~~~~~~~a 63 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKK-TQA-----VEYN---DGAIDTPGEYV----EN-RRLYSALIVTAADA 63 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----ccc-cee-----EEEc---CeeecCchhhh----hh-HHHHHHHHHHhhcC
Confidence 7999999999999999999987653 111 111 1111 26899999521 11 11122233457899
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHH
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
|++++|+|++++.......+... ...|+++|+||+|+.+.....+....+....+..+++++||++|.|++++++
T Consensus 64 d~vilv~d~~~~~s~~~~~~~~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 64 DVIALVQSATDPESRFPPGFASI-----FVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred CEEEEEecCCCCCcCCChhHHHh-----ccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999987764433333332 1349999999999975322122222222233444789999999999999999
Q ss_pred HHH
Q 018949 277 WIL 279 (348)
Q Consensus 277 ~i~ 279 (348)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 140
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.83 E-value=2e-19 Score=150.85 Aligned_cols=154 Identities=20% Similarity=0.222 Sum_probs=104.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|++|+|||||++++++..+. .....++.......+... ...+.+||+||. ..+..+ ....++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--~~~~~~-------~~~~~~ 69 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFV--EEYDPTIEDSYRKTIVVDGETYTLDILDTAGQ--EEFSAM-------RDLYIR 69 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--cCcCCChhHeEEEEEEECCEEEEEEEEECCCh--HHHHHH-------HHHHHh
Confidence 5899999999999999999987743 444555544444444443 467899999994 222222 223467
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhccccc-CCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
.+|++++|+|.++.. .....++........ .+.|+++|+||+|+...... .+....+....+ .+++++||+++.|
T Consensus 70 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~ 148 (160)
T cd00876 70 QGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG-CPFIETSAKDNIN 148 (160)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC-CcEEEeccCCCCC
Confidence 899999999997654 223333333333221 47999999999999863221 122222323223 5899999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
+++++++|.+.+
T Consensus 149 i~~l~~~l~~~i 160 (160)
T cd00876 149 IDEVFKLLVREI 160 (160)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 141
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.83 E-value=1.2e-19 Score=154.92 Aligned_cols=158 Identities=17% Similarity=0.137 Sum_probs=103.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEE-eE--EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH-RI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~-~~--~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
..+|+++|.+|||||||++++++..+. +..+.+|+.. .. ...+......+.+||++|. ..+..+ ...
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~--~~~~~~-------~~~ 73 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGED--EVAILL-------NDA 73 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCc--cccccc-------chh
Confidence 448999999999999999999998764 1233333322 11 1223334467899999994 333322 223
Q ss_pred hccCccEEEEEecCCCCCchHH-HHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 192 AGINADCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
++..+|++++|+|++++..... ..+...+... .+.|+++|+||+|+.+.... ......+....+...++++||++|.
T Consensus 74 ~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (169)
T cd01892 74 ELAACDVACLVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGD 152 (169)
T ss_pred hhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCc
Confidence 4689999999999977532111 1222222221 47999999999999643321 1112333344444456999999999
Q ss_pred CHHHHHHHHHHhCC
Q 018949 270 GVEDIRDWILTKLP 283 (348)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (348)
|++++++.+.+.+.
T Consensus 153 ~v~~lf~~l~~~~~ 166 (169)
T cd01892 153 SSNELFTKLATAAQ 166 (169)
T ss_pred cHHHHHHHHHHHhh
Confidence 99999999988764
No 142
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.82 E-value=3e-19 Score=148.51 Aligned_cols=158 Identities=32% Similarity=0.369 Sum_probs=114.9
Q ss_pred EEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccE
Q 018949 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC 198 (348)
Q Consensus 120 i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~ 198 (348)
++|++|+|||||+|++.+.........+++|........... ...+.+|||||+.... .........+...+..+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~--~~~~~~~~~~~~~~~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAG--GLGREREELARRVLERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccc--cchhhHHHHHHHHHHhCCE
Confidence 589999999999999999877656677777777666555543 6789999999975432 2222222344456789999
Q ss_pred EEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHH---HHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 199 IVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL---EWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 199 iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
+++|+|++.........+...... .+.|+++|+||+|+.......... ..........+++++||+++.|+++++
T Consensus 79 il~v~~~~~~~~~~~~~~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 79 ILFVVDADLRADEEEEKLLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence 999999998775555443333333 689999999999998765544332 223334455689999999999999999
Q ss_pred HHHHHh
Q 018949 276 DWILTK 281 (348)
Q Consensus 276 ~~i~~~ 281 (348)
+++.+.
T Consensus 157 ~~l~~~ 162 (163)
T cd00880 157 EALIEA 162 (163)
T ss_pred HHHHhh
Confidence 999865
No 143
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.82 E-value=4e-19 Score=151.54 Aligned_cols=157 Identities=21% Similarity=0.230 Sum_probs=102.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+|+++|++|||||||++++++..+.. ...+......... .+......+.+|||||. ..+.. .....++
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~------~~~~~~~ 73 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPE-RTEATIGVDFRERTVEIDGERIKVQLWDTAGQ--ERFRK------SMVQHYY 73 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC-ccccceeEEEEEEEEEECCeEEEEEEEeCCCh--HHHHH------hhHHHhh
Confidence 489999999999999999999876532 1122222222222 23344578999999994 32221 1123447
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCC--
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY-- 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~-- 267 (348)
+.+|++++|+|++++. .....++...... ...+.|+++|+||+|+.....+ ......+..... .+++++||++
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~ 152 (170)
T cd04115 74 RNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHS-MPLFETSAKDPS 152 (170)
T ss_pred cCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcC-CcEEEEeccCCc
Confidence 8999999999998654 3333333222221 1257999999999998754332 122333333333 5899999999
Q ss_pred -CCCHHHHHHHHHHhC
Q 018949 268 -GHGVEDIRDWILTKL 282 (348)
Q Consensus 268 -g~gi~eL~~~i~~~l 282 (348)
+.|++++|..+.+.+
T Consensus 153 ~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 153 ENDHVEAIFMTLAHKL 168 (170)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 899999999998765
No 144
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.82 E-value=3.8e-19 Score=160.73 Aligned_cols=154 Identities=19% Similarity=0.268 Sum_probs=102.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++++..+.. .+.+|+.+.....+. ...+.+.+|||+|. ..+..+. ..++.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~--~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~--~~~~~~~-------~~~~~ 70 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEE--QYTPTIEDFHRKLYSIRGEVYQLDILDTSGN--HPFPAMR-------RLSIL 70 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCC--CCCCChhHhEEEEEEECCEEEEEEEEECCCC--hhhhHHH-------HHHhc
Confidence 79999999999999999999877642 333343333333333 33467899999994 3333332 22467
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhccc---------ccCCCCEEEEEeccCCCChhh--HHHHHHHHHhcCCCCeEE
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGD---------HKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVI 261 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~---------~~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~ 261 (348)
.+|++|+|+|.++.. +....++..+... ...+.|+|+|+||+|+....+ ..+..+.+.. ....+++
T Consensus 71 ~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~-~~~~~~~ 149 (247)
T cd04143 71 TGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG-DENCAYF 149 (247)
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh-cCCCEEE
Confidence 899999999998653 2233333232211 125789999999999974221 2222222222 2235799
Q ss_pred EecCCCCCCHHHHHHHHHHhC
Q 018949 262 PVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~l 282 (348)
++||++|.|+++++++|.+.+
T Consensus 150 evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 150 EVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EEeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999865
No 145
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.82 E-value=6.5e-19 Score=154.26 Aligned_cols=151 Identities=19% Similarity=0.256 Sum_probs=100.1
Q ss_pred EcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEE
Q 018949 121 LGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCI 199 (348)
Q Consensus 121 ~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~i 199 (348)
+|.+|||||||+++++...+.. ..++.+.+.......++.....+.+||||| +..+..+ ...+++.+|++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G--~e~~~~l-------~~~~~~~ad~~ 71 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAG--QEKFGGL-------RDGYYIQGQCA 71 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCC--chhhhhh-------hHHHhcCCCEE
Confidence 6999999999999999766532 112222222222223344567899999999 4444433 33458899999
Q ss_pred EEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHH
Q 018949 200 VVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDW 277 (348)
Q Consensus 200 v~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~ 277 (348)
|+|+|+++.. .....| ...+.....+.|+++|+||+|+.......+.. .+....+ .++++|||++|.|++++|.+
T Consensus 72 ilV~D~t~~~S~~~i~~w-~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~-~~~~e~SAk~~~~v~~~F~~ 148 (200)
T smart00176 72 IIMFDVTARVTYKNVPNW-HRDLVRVCENIPIVLCGNKVDVKDRKVKAKSI-TFHRKKN-LQYYDISAKSNYNFEKPFLW 148 (200)
T ss_pred EEEEECCChHHHHHHHHH-HHHHHHhCCCCCEEEEEECcccccccCCHHHH-HHHHHcC-CEEEEEeCCCCCCHHHHHHH
Confidence 9999998764 333333 33333333679999999999986432111222 2222233 47999999999999999999
Q ss_pred HHHhCC
Q 018949 278 ILTKLP 283 (348)
Q Consensus 278 i~~~l~ 283 (348)
|.+.+.
T Consensus 149 l~~~i~ 154 (200)
T smart00176 149 LARKLI 154 (200)
T ss_pred HHHHHH
Confidence 997664
No 146
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.82 E-value=6e-19 Score=150.23 Aligned_cols=151 Identities=23% Similarity=0.264 Sum_probs=102.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.+|||||||++++.+.......++.+.+ ...+..++..+.+|||||. ..+. ..+..++..+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~~~i~D~~G~--~~~~-------~~~~~~~~~a 67 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT----PTKLRLDKYEVCIFDLGGG--ANFR-------GIWVNYYAEA 67 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccce----EEEEEECCEEEEEEECCCc--HHHH-------HHHHHHHcCC
Confidence 4899999999999999999986322222333332 2334556788999999994 3222 2345668999
Q ss_pred cEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHH--h---c-CCCCeEEEecCCC
Q 018949 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--K---F-TDVDEVIPVSAKY 267 (348)
Q Consensus 197 d~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~--~---~-~~~~~i~~vSA~~ 267 (348)
|++|+|+|+++.. .....++...++.. ..++|+++|+||+|+.......+....+. . . ...+++++|||++
T Consensus 68 ~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~ 147 (167)
T cd04161 68 HGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIE 147 (167)
T ss_pred CEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEcee
Confidence 9999999998754 33333444443331 15789999999999976543333322211 1 1 1234788899999
Q ss_pred C------CCHHHHHHHHHH
Q 018949 268 G------HGVEDIRDWILT 280 (348)
Q Consensus 268 g------~gi~eL~~~i~~ 280 (348)
| .|+++.++||..
T Consensus 148 g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 148 GLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCCccccCHHHHHHHHhc
Confidence 8 899999999964
No 147
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.82 E-value=3.9e-19 Score=150.07 Aligned_cols=146 Identities=16% Similarity=0.154 Sum_probs=98.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|++|+|||||+|+|.|.... . ..|... .+... .+|||||..... ..+.......+..+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~~~v---~~~~~----~~iDtpG~~~~~-----~~~~~~~~~~~~~a 65 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKTQAV---EFNDK----GDIDTPGEYFSH-----PRWYHALITTLQDV 65 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccceEE---EECCC----CcccCCccccCC-----HHHHHHHHHHHhcC
Confidence 7999999999999999999886421 1 122211 11111 269999963221 11223334457899
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHH
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
|++++|+|++........++... ..+.|+++++||+|+.... .......+.......|++++||++|+|+++|++
T Consensus 66 d~il~v~d~~~~~s~~~~~~~~~----~~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 66 DMLIYVHGANDPESRLPAGLLDI----GVSKRQIAVISKTDMPDAD-VAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred CEEEEEEeCCCcccccCHHHHhc----cCCCCeEEEEEccccCccc-HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 99999999987654444444332 1467999999999986532 333333333333335899999999999999999
Q ss_pred HHHHhCCC
Q 018949 277 WILTKLPL 284 (348)
Q Consensus 277 ~i~~~l~~ 284 (348)
++.+.+..
T Consensus 141 ~l~~~~~~ 148 (158)
T PRK15467 141 YLASLTKQ 148 (158)
T ss_pred HHHHhchh
Confidence 99987753
No 148
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.82 E-value=8.4e-19 Score=149.64 Aligned_cols=155 Identities=21% Similarity=0.329 Sum_probs=103.1
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+..+|+++|++|||||||++++.+..+....++.+.+. ..+...+..+.+|||||.. .+. ..+..+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~----~~i~~~~~~~~~~D~~G~~--~~~-------~~~~~~ 78 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI----KTVQSDGFKLNVWDIGGQR--AIR-------PYWRNY 78 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce----EEEEECCEEEEEEECCCCH--HHH-------HHHHHH
Confidence 346689999999999999999999976543333333222 2334456889999999942 211 223345
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAK 266 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~ 266 (348)
+..+|++++|+|+++.. .....++...++.. ..++|+++++||+|+............+... ....+++++||+
T Consensus 79 ~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~ 158 (173)
T cd04155 79 FENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAK 158 (173)
T ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECC
Confidence 78999999999998643 22223333333221 1569999999999997654333333332211 112357899999
Q ss_pred CCCCHHHHHHHHHH
Q 018949 267 YGHGVEDIRDWILT 280 (348)
Q Consensus 267 ~g~gi~eL~~~i~~ 280 (348)
+|+|+++++++|.+
T Consensus 159 ~~~gi~~~~~~l~~ 172 (173)
T cd04155 159 TGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999975
No 149
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.82 E-value=6.7e-19 Score=153.61 Aligned_cols=146 Identities=19% Similarity=0.207 Sum_probs=96.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC--ceeee-------------cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ--KLSIV-------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~--~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l 181 (348)
+|+++|.+|+|||||++++++. .+... ....++|.......+..++..+.+|||||+. .+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~--~~~-- 79 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHA--DFG-- 79 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcH--HHH--
Confidence 7999999999999999999863 22110 0123444444445566678899999999953 222
Q ss_pred HHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh---HHHHHHHHHhc----
Q 018949 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKF---- 254 (348)
Q Consensus 182 ~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~~~~~~~~---- 254 (348)
..+..+++.+|++++|+|++++.......+...... .++|+++|+||+|+..... ..+....+...
T Consensus 80 -----~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (194)
T cd01891 80 -----GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATE 152 (194)
T ss_pred -----HHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCcc
Confidence 234456789999999999988664444444444433 5789999999999964321 12222222211
Q ss_pred -CCCCeEEEecCCCCCCHHH
Q 018949 255 -TDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 255 -~~~~~i~~vSA~~g~gi~e 273 (348)
....+++++||++|.|+.+
T Consensus 153 ~~~~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 153 EQLDFPVLYASAKNGWASLN 172 (194)
T ss_pred ccCccCEEEeehhccccccc
Confidence 1134899999999977643
No 150
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.81 E-value=9e-19 Score=153.96 Aligned_cols=160 Identities=24% Similarity=0.330 Sum_probs=100.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCcee--eecCCCCceEEeEE---EE------------------------EeC------C
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRIL---GI------------------------CSG------P 161 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~--~~~~~~~~t~~~~~---~~------------------------~~~------~ 161 (348)
+|+++|+.|+|||||+.++.+.... ......+.|..... .. ... .
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 6999999999999999999764210 00000011110000 00 000 1
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCC-CchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
...+.+|||||+. .+...+...+..+|++++|+|++.+ ........+..+... ...|+++|+||+|+..
T Consensus 82 ~~~i~~iDtPG~~---------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 82 VRHVSFVDCPGHE---------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-GLKHIIIVQNKIDLVK 151 (203)
T ss_pred ccEEEEEECCChH---------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-CCCcEEEEEEchhccC
Confidence 2679999999942 1344566667899999999999874 332222233333331 2357999999999987
Q ss_pred hhhHHHHHHHHHhcC-----CCCeEEEecCCCCCCHHHHHHHHHHhCCCCC
Q 018949 241 PGEIAKKLEWYEKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (348)
Q Consensus 241 ~~~~~~~~~~~~~~~-----~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~ 286 (348)
..........+.... ...+++++||++|+|+++|+++|.+.++.++
T Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 152 EEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 544433333332221 2357999999999999999999999887643
No 151
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.81 E-value=2.1e-19 Score=152.32 Aligned_cols=154 Identities=19% Similarity=0.246 Sum_probs=99.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCce--EEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT--RHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||+++++...+. ..++.++ .......++.....+.+|||||....... ....+++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~ 70 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI--GEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTE--------QLERSIR 70 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc--cccCCChHHhceEEEEECCEEEEEEEEECCCCcccccc--------hHHHHHH
Confidence 4899999999999999999876653 2233333 22222233444567899999995321111 1223467
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc---cCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~---~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
.+|++|+|+|+++.. .....+ ...+... ..+.|+++|+||+|+.....+. .....+....+ .+++++||++|
T Consensus 71 ~~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~ 148 (165)
T cd04146 71 WADGFVLVYSITDRSSFDEISQL-KQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELG-CLFFEVSAAED 148 (165)
T ss_pred hCCEEEEEEECCCHHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcC-CEEEEeCCCCC
Confidence 899999999998754 222222 2222221 2579999999999986432221 12223333334 48999999999
Q ss_pred -CCHHHHHHHHHHhC
Q 018949 269 -HGVEDIRDWILTKL 282 (348)
Q Consensus 269 -~gi~eL~~~i~~~l 282 (348)
.|++++|..+.+.+
T Consensus 149 ~~~v~~~f~~l~~~~ 163 (165)
T cd04146 149 YDGVHSVFHELCREV 163 (165)
T ss_pred chhHHHHHHHHHHHH
Confidence 59999999998765
No 152
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.81 E-value=5e-19 Score=156.53 Aligned_cols=157 Identities=22% Similarity=0.300 Sum_probs=105.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe---CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS---GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+|+++|.+|||||||++++.+.++.... .+..+.+.....+. .....+.+|||||. ..+..+ ...+
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~ 72 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ--ERFRSI-------TRSY 72 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcc--hhHHHH-------HHHH
Confidence 48999999999999999999988765322 22222232222222 23467999999994 333322 3345
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhccccc-CCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++.+|++|+|+|.++.. .....++........ ...|+++|+||+|+.....+ ......+.+..+ .+++++||++|
T Consensus 73 ~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sak~g 151 (211)
T cd04111 73 YRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLG-MKYIETSARTG 151 (211)
T ss_pred hcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhC-CEEEEEeCCCC
Confidence 78999999999998753 333344443332221 35778999999999754322 222334444444 58999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|+++++++|.+.+.
T Consensus 152 ~~v~e~f~~l~~~~~ 166 (211)
T cd04111 152 DNVEEAFELLTQEIY 166 (211)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987654
No 153
>COG2262 HflX GTPases [General function prediction only]
Probab=99.81 E-value=5.7e-19 Score=164.25 Aligned_cols=164 Identities=30% Similarity=0.334 Sum_probs=123.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.+.|+++|++|+|||||+|+|.+.... +.+...+|.++....+... +..+.+-||-|+++.-++.+-..|. .++...
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~-~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFk-sTLEE~ 269 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVY-VADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFK-STLEEV 269 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCee-ccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHH-HHHHHh
Confidence 448999999999999999999987765 5677778877766655544 6889999999999877777766663 445667
Q ss_pred cCccEEEEEecCCCCC-chHHHHHHHhccccc-CCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 194 INADCIVVLVDACKAP-ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
..+|++++|+|++++. ..........+.+.+ ...|+|+|+||+|+...... ...+....+ ..+++||++|.|+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~~~~~--~~v~iSA~~~~gl 344 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI---LAELERGSP--NPVFISAKTGEGL 344 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh---hhhhhhcCC--CeEEEEeccCcCH
Confidence 8999999999999875 222333444444432 56899999999998865542 222222222 5799999999999
Q ss_pred HHHHHHHHHhCCCC
Q 018949 272 EDIRDWILTKLPLG 285 (348)
Q Consensus 272 ~eL~~~i~~~l~~~ 285 (348)
+.|++.|.+.+...
T Consensus 345 ~~L~~~i~~~l~~~ 358 (411)
T COG2262 345 DLLRERIIELLSGL 358 (411)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999988753
No 154
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.81 E-value=4.8e-19 Score=182.07 Aligned_cols=162 Identities=25% Similarity=0.317 Sum_probs=121.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh----hhhHHHHHHHHH
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI----HMLDSMMMKNVR 190 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~----~~l~~~~~~~~~ 190 (348)
..+|+++|+||||||||+|++.|.+.. +.+.+++|.+...+.+..++..+.++||||+.+... ...+.......
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~- 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY- 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH-
Confidence 458999999999999999999998764 788999999998888888889999999999754221 12222222211
Q ss_pred hhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
.....+|++++|+|+++...... +...+.+ .++|+++|+||+|+.+........+.+.+..+. |++++||++|+|
T Consensus 81 l~~~~aD~vI~VvDat~ler~l~--l~~ql~e--~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~-pVvpiSA~~g~G 155 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNLY--LTLQLLE--LGIPCIVALNMLDIAEKQNIRIDIDALSARLGC-PVIPLVSTRGRG 155 (772)
T ss_pred HhccCCCEEEEEecCCcchhhHH--HHHHHHH--cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCC-CEEEEEeecCCC
Confidence 12358999999999987544322 3334444 679999999999987554444444555555554 899999999999
Q ss_pred HHHHHHHHHHhCC
Q 018949 271 VEDIRDWILTKLP 283 (348)
Q Consensus 271 i~eL~~~i~~~l~ 283 (348)
++++++.+.+...
T Consensus 156 IdeL~~~I~~~~~ 168 (772)
T PRK09554 156 IEALKLAIDRHQA 168 (772)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987653
No 155
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.81 E-value=2e-18 Score=150.53 Aligned_cols=145 Identities=19% Similarity=0.177 Sum_probs=103.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCce------e---------eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKL------S---------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~------~---------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 180 (348)
.+|+++|++++|||||+++|++... . ......++|.......+..++..+.++||||+.+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~----- 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD----- 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH-----
Confidence 3799999999999999999985310 0 0112456666666666677788999999999532
Q ss_pred hHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhhHHH-HH----HHHHhc
Q 018949 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-KL----EWYEKF 254 (348)
Q Consensus 181 l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~-~~----~~~~~~ 254 (348)
+...+...+..+|++++|+|+..+...+...+...+.. .++| +|+|+||+|+....+..+ .. ..+...
T Consensus 78 ----~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~ 151 (195)
T cd01884 78 ----YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQ--VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKY 151 (195)
T ss_pred ----HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 34455666789999999999998887777777777766 5677 779999999975333221 21 222221
Q ss_pred C---CCCeEEEecCCCCCCH
Q 018949 255 T---DVDEVIPVSAKYGHGV 271 (348)
Q Consensus 255 ~---~~~~i~~vSA~~g~gi 271 (348)
. ...+++++||++|.|+
T Consensus 152 g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 152 GFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred cccccCCeEEEeeCccccCC
Confidence 1 2368999999999985
No 156
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.81 E-value=5.6e-19 Score=149.98 Aligned_cols=149 Identities=16% Similarity=0.164 Sum_probs=100.9
Q ss_pred EEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCcc
Q 018949 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad 197 (348)
|+++|.+|||||||++++.+..+. ..+..|.... ...+...+..+.+|||||. ..+..+ +..+++.+|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~--~~~~pt~g~~-~~~i~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~~~ad 69 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL--ESVVPTTGFN-SVAIPTQDAIMELLEIGGS--QNLRKY-------WKRYLSGSQ 69 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc--ccccccCCcc-eEEEeeCCeEEEEEECCCC--cchhHH-------HHHHHhhCC
Confidence 799999999999999999987653 1222222111 2334566788999999994 333322 334578999
Q ss_pred EEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHH-----HHHHhcCCCCeEEEecCCC---
Q 018949 198 CIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-----EWYEKFTDVDEVIPVSAKY--- 267 (348)
Q Consensus 198 ~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~-----~~~~~~~~~~~i~~vSA~~--- 267 (348)
++|+|+|+++.. .....++....... .++|+++|+||+|+.......... ..+.... .++++++||++
T Consensus 70 ~ii~V~D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~Sa~~~~s 147 (164)
T cd04162 70 GLIFVVDSADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGR-RWILQGTSLDDDGS 147 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCC-ceEEEEeeecCCCC
Confidence 999999998754 33334444444332 679999999999997654433322 2222222 24678888888
Q ss_pred ---CCCHHHHHHHHHH
Q 018949 268 ---GHGVEDIRDWILT 280 (348)
Q Consensus 268 ---g~gi~eL~~~i~~ 280 (348)
++|++++|+.+..
T Consensus 148 ~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 148 PSRMEAVKDLLSQLIN 163 (164)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999998764
No 157
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.80 E-value=7.2e-19 Score=156.59 Aligned_cols=155 Identities=24% Similarity=0.281 Sum_probs=100.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCcee-eecCCCCc-eEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLS-IVTNKPQT-TRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~~-t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++.+..+. .....+.. ........+......+.+|||||.. ..+.. .++.
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~----~~~~~-------~~~~ 70 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE----MWTED-------SCMQ 70 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc----hHHHh-------HHhh
Confidence 7999999999999999999876653 11111111 1222223344456789999999953 11111 1234
Q ss_pred -CccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCC
Q 018949 195 -NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 195 -~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
.+|++++|+|+++.. .....++..+.... ..+.|+|+|+||+|+.....+. +....+....+ ++++++||++|.
T Consensus 71 ~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~SA~~~~ 149 (221)
T cd04148 71 YQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFD-CKFIETSAGLQH 149 (221)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcC-CeEEEecCCCCC
Confidence 899999999998754 22233333222211 1579999999999997543321 11223333333 478999999999
Q ss_pred CHHHHHHHHHHhCC
Q 018949 270 GVEDIRDWILTKLP 283 (348)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (348)
|++++++++.+.+.
T Consensus 150 gv~~l~~~l~~~~~ 163 (221)
T cd04148 150 NVDELLEGIVRQIR 163 (221)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999998774
No 158
>PLN03108 Rab family protein; Provisional
Probab=99.80 E-value=9.8e-19 Score=154.54 Aligned_cols=158 Identities=20% Similarity=0.190 Sum_probs=103.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.+|+++|++|+|||||++++.+..+.... ++.+.+.......+......+.+|||||. ..+..+ ...++.
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~--~~~~~~-------~~~~~~ 77 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ--ESFRSI-------TRSYYR 77 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCc--HHHHHH-------HHHHhc
Confidence 48999999999999999999987765321 11122221222223333467889999994 333222 334567
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+|++|+|+|+++.. .....++.........+.|+++|+||+|+...... ......+....+ .+++++||+++.|+
T Consensus 78 ~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v 156 (210)
T PLN03108 78 GAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNV 156 (210)
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 899999999998754 22333433333222257899999999999753221 112222333333 48999999999999
Q ss_pred HHHHHHHHHhCC
Q 018949 272 EDIRDWILTKLP 283 (348)
Q Consensus 272 ~eL~~~i~~~l~ 283 (348)
+++|.++.+.+.
T Consensus 157 ~e~f~~l~~~~~ 168 (210)
T PLN03108 157 EEAFIKTAAKIY 168 (210)
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
No 159
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.80 E-value=1.3e-18 Score=174.19 Aligned_cols=156 Identities=21% Similarity=0.288 Sum_probs=111.4
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
.|.++|+++|++|+|||||+++|.+..+.. ...++.|.+.....+...+ ..+.+|||||+ ..+..+ ...
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGh--e~F~~~-------r~r 154 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGH--EAFTSM-------RAR 154 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEECCCcEEEEEECCCC--cchhhH-------HHh
Confidence 367799999999999999999999887653 3455666665544444433 38999999995 344333 224
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh--hhHHHHHHHHH----hcCCCCeEEEecC
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWYE----KFTDVDEVIPVSA 265 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~~~----~~~~~~~i~~vSA 265 (348)
.+..+|++++|+|++++...+........+. .++|+++++||+|+... ..+...+.... ...+..+++++||
T Consensus 155 ga~~aDiaILVVda~dgv~~qT~e~i~~~~~--~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSA 232 (587)
T TIGR00487 155 GAKVTDIVVLVVAADDGVMPQTIEAISHAKA--ANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSA 232 (587)
T ss_pred hhccCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEEC
Confidence 4689999999999988776655555555554 67999999999999643 22222221111 1222357999999
Q ss_pred CCCCCHHHHHHHHHH
Q 018949 266 KYGHGVEDIRDWILT 280 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~ 280 (348)
++|.|+++|+++|..
T Consensus 233 ktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 233 LTGDGIDELLDMILL 247 (587)
T ss_pred CCCCChHHHHHhhhh
Confidence 999999999999864
No 160
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.80 E-value=1.8e-18 Score=165.69 Aligned_cols=190 Identities=25% Similarity=0.327 Sum_probs=135.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe------------------------CCCeeEEEEeCCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS------------------------GPEYQMILYDTPG 172 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~------------------------~~~~~~~l~DtpG 172 (348)
+|+|+|.||||||||+|+|++.... +++++++|..+..+... ....++.++||||
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~~~-~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLADVE-IANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCccc-ccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 7999999999999999999998764 57889999888776533 1225689999999
Q ss_pred CchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCC--------------C-chH-------HH---------------H
Q 018949 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA--------------P-ERI-------DE---------------I 215 (348)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~--------------~-~~~-------~~---------------~ 215 (348)
+...... ...+...++..++.||++++|+|+... + ... .. .
T Consensus 82 l~~ga~~--g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~ 159 (396)
T PRK09602 82 LVPGAHE--GRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRK 159 (396)
T ss_pred cCCCccc--hhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 8653321 122334566678999999999999621 0 000 00 0
Q ss_pred -------------------------HHHhccc----------------------ccCCCCEEEEEeccCCCChhhHHHHH
Q 018949 216 -------------------------LEEGVGD----------------------HKDKLPILLVLNKKDLIKPGEIAKKL 248 (348)
Q Consensus 216 -------------------------~~~~~~~----------------------~~~~~p~ivv~NK~Dl~~~~~~~~~~ 248 (348)
+...+.. +...+|+|+|+||+|+...... .
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~---l 236 (396)
T PRK09602 160 AQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEEN---I 236 (396)
T ss_pred HhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHH---H
Confidence 1111110 1135899999999998643321 1
Q ss_pred HHHHhcCCCCeEEEecCCCCCCHHH-HHHHHHHhCCCCCCCCCCcccCCCchHHHHHHHHHHHHHhhcc
Q 018949 249 EWYEKFTDVDEVIPVSAKYGHGVED-IRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYR 316 (348)
Q Consensus 249 ~~~~~~~~~~~i~~vSA~~g~gi~e-L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~ 316 (348)
..+... +...++++||+.+.|+++ +.+.+.+.++.++++++.+..++++.+ +.|++| +++..+.
T Consensus 237 ~~i~~~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r--~~E~IR-k~l~~~g 301 (396)
T PRK09602 237 ERLKEE-KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKK--ALEYIR-EVLKKYG 301 (396)
T ss_pred HHHHhc-CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHH--HHHHHH-HHHHHhC
Confidence 222222 455799999999999999 899999999999999999999988887 778888 6666544
No 161
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.80 E-value=1.5e-18 Score=149.06 Aligned_cols=156 Identities=26% Similarity=0.353 Sum_probs=110.2
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+..+|+++|..|+||||+++++.......+.++.+ .....+...+..+.+||.+| +.....+ +..+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g----~~~~~i~~~~~~~~~~d~gG--~~~~~~~-------w~~y 78 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIG----FNIEEIKYKGYSLTIWDLGG--QESFRPL-------WKSY 78 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESS----EEEEEEEETTEEEEEEEESS--SGGGGGG-------GGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccc----cccceeeeCcEEEEEEeccc--ccccccc-------ceee
Confidence 356699999999999999999999876553333322 33334556788999999999 4443333 3455
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHH--hc--CCCCeEEEecC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYE--KF--TDVDEVIPVSA 265 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~--~~--~~~~~i~~vSA 265 (348)
+..+|++|||+|+++.. .+....+...+... ..++|++|++||+|+.+.....+....+. .. .....++.|||
T Consensus 79 ~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa 158 (175)
T PF00025_consen 79 FQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSA 158 (175)
T ss_dssp HTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBT
T ss_pred ccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeec
Confidence 78999999999998653 33344444444431 26799999999999986544333333222 11 23457899999
Q ss_pred CCCCCHHHHHHHHHHh
Q 018949 266 KYGHGVEDIRDWILTK 281 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~ 281 (348)
.+|+|+.+.++||.+.
T Consensus 159 ~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 159 KTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp TTTBTHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHhc
Confidence 9999999999999875
No 162
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.80 E-value=9.6e-19 Score=179.09 Aligned_cols=157 Identities=20% Similarity=0.267 Sum_probs=114.6
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
..|.+.|+|+|++|+|||||+++|.+..+. .....+.|.+.....+.+++..+++|||||+. .+..+ ...
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe--~F~~m-------~~r 356 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHE--AFTAM-------RAR 356 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCc--cchhH-------HHh
Confidence 357889999999999999999999887664 33455666665555566667889999999953 33333 224
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh--hHHHHHHHH----HhcCCCCeEEEecC
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWY----EKFTDVDEVIPVSA 265 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~----~~~~~~~~i~~vSA 265 (348)
.+..+|++|+|+|++++...+....+..... .++|+|||+||+|+.... .+...+... ....+..+++++||
T Consensus 357 ga~~aDiaILVVdAddGv~~qT~e~i~~a~~--~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSA 434 (787)
T PRK05306 357 GAQVTDIVVLVVAADDGVMPQTIEAINHAKA--AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSA 434 (787)
T ss_pred hhhhCCEEEEEEECCCCCCHhHHHHHHHHHh--cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeC
Confidence 4678999999999998876666555555555 679999999999997532 221111111 11223468999999
Q ss_pred CCCCCHHHHHHHHHH
Q 018949 266 KYGHGVEDIRDWILT 280 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~ 280 (348)
++|.|+++|+++|..
T Consensus 435 ktG~GI~eLle~I~~ 449 (787)
T PRK05306 435 KTGEGIDELLEAILL 449 (787)
T ss_pred CCCCCchHHHHhhhh
Confidence 999999999999874
No 163
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.80 E-value=9.3e-19 Score=147.75 Aligned_cols=149 Identities=13% Similarity=0.170 Sum_probs=97.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEe-EEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR-ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+|+++|.+|||||||+.+++...+... .+.+.... ....+......+.+|||+|.. . ..++..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~--~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~--~------------~~~~~~ 65 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL--ESPEGGRFKKEVLVDGQSHLLLIRDEGGAP--D------------AQFASW 65 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC--CCCCccceEEEEEECCEEEEEEEEECCCCC--c------------hhHHhc
Confidence 799999999999999999987765422 12111111 112222333668999999952 1 122467
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCC--hhhHH-HHHHHHHhcCCCCeEEEecCCCCC
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIK--PGEIA-KKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~--~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+|++++|+|.++.. +....++....... ..+.|+++|+||+|+.. ..++. .....+.+..+.+++++|||++|.
T Consensus 66 ~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~ 145 (158)
T cd04103 66 VDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGL 145 (158)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 99999999998765 33334433333221 15689999999999852 22222 222334333344589999999999
Q ss_pred CHHHHHHHHHHh
Q 018949 270 GVEDIRDWILTK 281 (348)
Q Consensus 270 gi~eL~~~i~~~ 281 (348)
|++++|..+.+.
T Consensus 146 ~i~~~f~~~~~~ 157 (158)
T cd04103 146 NVERVFQEAAQK 157 (158)
T ss_pred CHHHHHHHHHhh
Confidence 999999998864
No 164
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.80 E-value=2e-18 Score=144.09 Aligned_cols=151 Identities=21% Similarity=0.304 Sum_probs=100.2
Q ss_pred EEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCcc
Q 018949 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad 197 (348)
|+++|++|||||||+|++.+.++.. ...+ ++.... ..+..++..+.+|||||. ..+. ..+..++..+|
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~-~~~~-t~~~~~-~~~~~~~~~~~~~D~~g~--~~~~-------~~~~~~~~~~d 69 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE-DTIP-TVGFNM-RKVTKGNVTLKVWDLGGQ--PRFR-------SMWERYCRGVN 69 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc-CccC-CCCcce-EEEEECCEEEEEEECCCC--HhHH-------HHHHHHHhcCC
Confidence 8999999999999999999987642 2222 222211 223445588999999994 2222 22344578999
Q ss_pred EEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCCCCCH
Q 018949 198 CIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 198 ~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~g~gi 271 (348)
++++|+|++... .....++....... ..++|+++|+||+|+.+..........+.. .....+++++||++|.|+
T Consensus 70 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 70 AIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNI 149 (159)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCCh
Confidence 999999997643 22223334333321 157899999999998765443333333221 112247899999999999
Q ss_pred HHHHHHHHH
Q 018949 272 EDIRDWILT 280 (348)
Q Consensus 272 ~eL~~~i~~ 280 (348)
++++++|.+
T Consensus 150 ~~l~~~l~~ 158 (159)
T cd04159 150 DIVLDWLIK 158 (159)
T ss_pred HHHHHHHhh
Confidence 999999875
No 165
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.80 E-value=1.9e-18 Score=154.95 Aligned_cols=155 Identities=30% Similarity=0.392 Sum_probs=112.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.+|+|||||+|+|.+.... +...+++|.....+.+..++..+.+|||||+....... ..........++.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~--~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-VAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG--KGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCccccceEEEEEECCeEEEEEECCCcccccccc--hhHHHHHHHhhccC
Confidence 7999999999999999999998744 56788899888888887888999999999975432111 12223445678999
Q ss_pred cEEEEEecCCCCCchHHHHHHHhc--------------------------------------------ccc---------
Q 018949 197 DCIVVLVDACKAPERIDEILEEGV--------------------------------------------GDH--------- 223 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~--------------------------------------------~~~--------- 223 (348)
|++++|+|+++...... .+...+ ++.
T Consensus 79 d~il~V~D~t~~~~~~~-~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~ 157 (233)
T cd01896 79 DLILMVLDATKPEGHRE-ILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLI 157 (233)
T ss_pred CEEEEEecCCcchhHHH-HHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEE
Confidence 99999999876432111 111111 110
Q ss_pred ----------------cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 224 ----------------KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 224 ----------------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
...+|+++|+||+|+.+..+... +.. ..+++++||++|.|+++|++.+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~----~~~---~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 158 REDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL----LAR---QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred ccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH----Hhc---CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 12368999999999987665442 222 23589999999999999999998865
No 166
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.80 E-value=1.3e-18 Score=149.67 Aligned_cols=156 Identities=22% Similarity=0.301 Sum_probs=102.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|.+|||||||++++++..+. ....+++......... ...+.+.+|||||.. .+..+ ...++.
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~--~~~~~-------~~~~~~ 71 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHFV--ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQD--EYSIL-------PQKYSI 71 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc--cccCcchhhhEEEEEEECCEEEEEEEEECCChH--hhHHH-------HHHHHh
Confidence 7999999999999999999987653 2233333222222222 234568999999953 33222 223467
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
.++++++|+|.++.. +....++...++.. ..+.|+++|+||+|+....... .....+....+ .+++++||++|.|
T Consensus 72 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 150 (180)
T cd04137 72 GIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWG-AAFLESSARENEN 150 (180)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcC-CeEEEEeCCCCCC
Confidence 899999999998643 33333333333322 1568999999999987432221 11222233333 4789999999999
Q ss_pred HHHHHHHHHHhCCC
Q 018949 271 VEDIRDWILTKLPL 284 (348)
Q Consensus 271 i~eL~~~i~~~l~~ 284 (348)
+.+++.++.+.+..
T Consensus 151 v~~l~~~l~~~~~~ 164 (180)
T cd04137 151 VEEAFELLIEEIEK 164 (180)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987653
No 167
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.2e-18 Score=171.29 Aligned_cols=164 Identities=27% Similarity=0.310 Sum_probs=129.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
.+|+++|.||||||||.|++.|.+.. +.+.||.|.+...+.+..++..+.++|.||...-...+.+....+.+.. -..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~-VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll-~~~ 81 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQK-VGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL-EGK 81 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCce-ecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHh-cCC
Confidence 36999999999999999999999876 7999999999999999999999999999998765545555554444332 257
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
+|++|.|+|+++-.....- .. ++.+ .++|+++++|++|.....-+.-..+.+.+..+. |++++||++|.|+++++
T Consensus 82 ~D~ivnVvDAtnLeRnLyl-tl-QLlE--~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGv-PVv~tvA~~g~G~~~l~ 156 (653)
T COG0370 82 PDLIVNVVDATNLERNLYL-TL-QLLE--LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGV-PVVPTVAKRGEGLEELK 156 (653)
T ss_pred CCEEEEEcccchHHHHHHH-HH-HHHH--cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCC-CEEEEEeecCCCHHHHH
Confidence 8999999999875544332 22 2333 689999999999987654444344556666665 99999999999999999
Q ss_pred HHHHHhCCCCC
Q 018949 276 DWILTKLPLGP 286 (348)
Q Consensus 276 ~~i~~~l~~~~ 286 (348)
..+.+..+...
T Consensus 157 ~~i~~~~~~~~ 167 (653)
T COG0370 157 RAIIELAESKT 167 (653)
T ss_pred HHHHHhccccc
Confidence 99998776544
No 168
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.80 E-value=8.3e-19 Score=154.76 Aligned_cols=147 Identities=24% Similarity=0.224 Sum_probs=100.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec------------------------------CCCCceEEeEEEEEeCCCeeEE
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT------------------------------NKPQTTRHRILGICSGPEYQMI 166 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~~~~ 166 (348)
+|+|+|++|+|||||+++|++....+.. ...++|.+.....+..++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999865433221 1256677777777777888999
Q ss_pred EEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCC-CCEEEEEeccCCCChhh--
Q 018949 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLIKPGE-- 243 (348)
Q Consensus 167 l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~NK~Dl~~~~~-- 243 (348)
+|||||+.+ + ...+...+..+|++++|+|++.+...........+.. .+ .++|+|+||+|+.....
T Consensus 81 liDTpG~~~--~-------~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~--~~~~~iIvviNK~D~~~~~~~~ 149 (208)
T cd04166 81 IADTPGHEQ--Y-------TRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL--LGIRHVVVAVNKMDLVDYSEEV 149 (208)
T ss_pred EEECCcHHH--H-------HHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH--cCCCcEEEEEEchhcccCCHHH
Confidence 999999522 1 1223445789999999999998775555444444444 33 45788999999975221
Q ss_pred HHH---HHHHHHhcCC--CCeEEEecCCCCCCHHHH
Q 018949 244 IAK---KLEWYEKFTD--VDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 244 ~~~---~~~~~~~~~~--~~~i~~vSA~~g~gi~eL 274 (348)
... ....+....+ ..+++++||++|.|+.+.
T Consensus 150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 112 2222222233 246999999999999853
No 169
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.9e-18 Score=147.28 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=114.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCc-eEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~-t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
+..+|+++|.+|||||+++-++....+.. ....| -.+... ..++.....+++|||+| |+.+..+ +.
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~--~~~sTiGIDFk~kti~l~g~~i~lQiWDtaG--Qerf~ti-------~~ 79 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNT--SFISTIGIDFKIKTIELDGKKIKLQIWDTAG--QERFRTI-------TT 79 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcC--CccceEEEEEEEEEEEeCCeEEEEEEEEccc--chhHHHH-------HH
Confidence 45589999999999999999999888752 22211 122222 23445567899999999 6665543 66
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCC
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
.|++.|+++++|+|.++.. +.... |...+.+. ..++|.++|+||+|+...+.+ .+..+.+....+. +++++||+
T Consensus 80 sYyrgA~gi~LvyDitne~Sfeni~~-W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~-~F~EtSAk 157 (207)
T KOG0078|consen 80 AYYRGAMGILLVYDITNEKSFENIRN-WIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGI-KFFETSAK 157 (207)
T ss_pred HHHhhcCeeEEEEEccchHHHHHHHH-HHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCC-eEEEcccc
Confidence 7789999999999998754 44445 44444443 358999999999999875443 3344555555555 89999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 018949 267 YGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (348)
+|.||++.|-.+.+.+..
T Consensus 158 ~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 158 TNFNIEEAFLSLARDILQ 175 (207)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999887653
No 170
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.79 E-value=1.7e-18 Score=150.18 Aligned_cols=157 Identities=20% Similarity=0.207 Sum_probs=101.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|++|+|||||++++....+.. ....+........ +......+.+|||||. ..+..... ..+.
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~--~~~~~~~~-------~~~~ 71 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQ--EEYERLRP-------LSYS 71 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCC--hhccccch-------hhcC
Confidence 79999999999999999998655432 1222222222222 2333456889999994 23222211 2367
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChh----------hH-HHHHHHHHhcCCCCeEE
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----------EI-AKKLEWYEKFTDVDEVI 261 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~----------~~-~~~~~~~~~~~~~~~i~ 261 (348)
.+|++++|+|.++.. ......|...++....+.|+++|+||+|+.... .. ......+....+..+++
T Consensus 72 ~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (187)
T cd04129 72 KAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYM 151 (187)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEE
Confidence 899999999987644 233233444433333579999999999985321 00 11233344445556899
Q ss_pred EecCCCCCCHHHHHHHHHHhCCC
Q 018949 262 PVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
+|||++|.|++++|+++.+.+..
T Consensus 152 e~Sa~~~~~v~~~f~~l~~~~~~ 174 (187)
T cd04129 152 ECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred EccCCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999976643
No 171
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.79 E-value=2.1e-18 Score=150.59 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=99.6
Q ss_pred cEEEEEcCCCCChHHHHH-HHhCCcee---eecCCCCceE--EeE--E--------EEEeCCCeeEEEEeCCCCchhhhh
Q 018949 116 GYVAVLGKPNVGKSTLAN-QMIGQKLS---IVTNKPQTTR--HRI--L--------GICSGPEYQMILYDTPGIIEKKIH 179 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin-~l~~~~~~---~~~~~~~~t~--~~~--~--------~~~~~~~~~~~l~DtpG~~~~~~~ 179 (348)
.+|+++|.+|||||||+. ++.+..+. ....+.+|.. +.. . ..++...+.+.+|||+|..+
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~---- 78 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD---- 78 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh----
Confidence 389999999999999996 55443321 0112222221 111 1 12445567899999999521
Q ss_pred hhHHHHHHHHHhhccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCCh----------------
Q 018949 180 MLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP---------------- 241 (348)
Q Consensus 180 ~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~---------------- 241 (348)
.+ ...+++.+|++|+|+|.++.. ......|...++....+.|+++|+||+|+...
T Consensus 79 ~~-------~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~ 151 (195)
T cd01873 79 KD-------RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPI 151 (195)
T ss_pred hh-------hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhccccccccc
Confidence 11 123578999999999998754 33322343433333357899999999998631
Q ss_pred ---hhH-HHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHh
Q 018949 242 ---GEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 242 ---~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~ 281 (348)
..+ .+....+.+..+. ++++|||++|.|++++|+.+.+.
T Consensus 152 ~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 152 KNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 111 2233444455554 89999999999999999998864
No 172
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.79 E-value=1.5e-18 Score=138.65 Aligned_cols=116 Identities=38% Similarity=0.522 Sum_probs=90.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.+|+|||||+|+|++.+...++..+++|+......+...+..+.++||||+.+.............+...+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 59999999999999999999987777889999999987777777888899999999865433322222344566667999
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEec
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK 235 (348)
|+++||+|++.........+...++ .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~~~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPITEDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSHHHHHHHHHHHH---TTSEEEEEEES
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHh---cCCCEEEEEcC
Confidence 9999999987744444555555553 67999999998
No 173
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1e-18 Score=145.23 Aligned_cols=157 Identities=20% Similarity=0.246 Sum_probs=116.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCC-CCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-PQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.++.++|..|||||+|+.++..+.+..+.+. .|..-......++....++++|||+| ++.+.++ +.++++
T Consensus 7 fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaG--qe~frsv-------~~syYr 77 (216)
T KOG0098|consen 7 FKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAG--QESFRSV-------TRSYYR 77 (216)
T ss_pred EEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCC--cHHHHHH-------HHHHhc
Confidence 3899999999999999999999998755431 12222222334667788999999999 6555544 556789
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH-HHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.+-++++|+|.+... ..+..|+....+....+.-+++++||+||...+++.+ ..+.+.+.-++ .++++||++++|+
T Consensus 78 ~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgL-ifmETSakt~~~V 156 (216)
T KOG0098|consen 78 GAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGL-IFMETSAKTAENV 156 (216)
T ss_pred cCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCc-eeehhhhhhhhhH
Confidence 999999999998644 6666777766655457888999999999987665533 33444444444 6789999999999
Q ss_pred HHHHHHHHHhC
Q 018949 272 EDIRDWILTKL 282 (348)
Q Consensus 272 ~eL~~~i~~~l 282 (348)
++.|..+...+
T Consensus 157 EEaF~nta~~I 167 (216)
T KOG0098|consen 157 EEAFINTAKEI 167 (216)
T ss_pred HHHHHHHHHHH
Confidence 99998766544
No 174
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.79 E-value=1.1e-17 Score=141.00 Aligned_cols=160 Identities=28% Similarity=0.383 Sum_probs=106.8
Q ss_pred EEEEcCCCCChHHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh-hhhHH---HHHHHHHhh
Q 018949 118 VAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDS---MMMKNVRSA 192 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~l~~---~~~~~~~~~ 192 (348)
|+++|.+|+|||||+|++.+.. ....+.++++|........ + ..+.+|||||+..... ..... .....+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV--N-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc--c-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999543 3335566666655433222 2 2799999999754211 00111 112222233
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHh----cCCCCeEEEecCCCC
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK----FTDVDEVIPVSAKYG 268 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~i~~vSA~~g 268 (348)
...++++++|+|...........+...+.. .+.|+++|+||+|+............... .....+++++||+++
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~--~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~ 156 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEE--LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKG 156 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHHHHHHHHHH--cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCC
Confidence 356789999999987665555555566655 56899999999999765543333222221 234458999999999
Q ss_pred CCHHHHHHHHHHhC
Q 018949 269 HGVEDIRDWILTKL 282 (348)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (348)
.|+.+++++|.+.+
T Consensus 157 ~~~~~l~~~l~~~~ 170 (170)
T cd01876 157 QGIDELRALIEKWL 170 (170)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999998753
No 175
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.79 E-value=2.6e-18 Score=174.49 Aligned_cols=157 Identities=17% Similarity=0.249 Sum_probs=110.0
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--Ee--CCCeeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CS--GPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
.+.+.|+++|++|+|||||+++|.+..+.. ...++.|.+..... +. ..+..+.+|||||+ ..+..+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh--e~F~~m------- 311 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH--EAFSSM------- 311 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcH--HHHHHH-------
Confidence 367799999999999999999999876652 33344444322111 22 24588999999994 333332
Q ss_pred HHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHH-------hcCCCCeEE
Q 018949 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE-------KFTDVDEVI 261 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-------~~~~~~~i~ 261 (348)
+..++..+|++|+|+|++++...+....+..+.. .++|+|+|+||+|+.... .......+. ...+..+++
T Consensus 312 r~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~--~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv 388 (742)
T CHL00189 312 RSRGANVTDIAILIIAADDGVKPQTIEAINYIQA--ANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDTPMI 388 (742)
T ss_pred HHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh--cCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCceEE
Confidence 3345689999999999988776655555555555 679999999999997532 111222221 122346899
Q ss_pred EecCCCCCCHHHHHHHHHHhC
Q 018949 262 PVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~l 282 (348)
++||++|.|+++|+++|....
T Consensus 389 ~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 389 PISASQGTNIDKLLETILLLA 409 (742)
T ss_pred EEECCCCCCHHHHHHhhhhhh
Confidence 999999999999999987653
No 176
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.78 E-value=3.4e-18 Score=170.87 Aligned_cols=156 Identities=23% Similarity=0.269 Sum_probs=104.4
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe------------------CCCeeEEEEeCCCCc
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS------------------GPEYQMILYDTPGII 174 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~------------------~~~~~~~l~DtpG~~ 174 (348)
.|++.|+++|++|+|||||+|+|.+..+.. ....++|++.-...+. .....+.+|||||+
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~-~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~- 79 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAK-REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH- 79 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccccc-ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc-
Confidence 477899999999999999999999986642 1122233321111111 11124899999994
Q ss_pred hhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh-----------
Q 018949 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE----------- 243 (348)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----------- 243 (348)
..+..+. ..++..+|++++|+|++++...+.......++. .++|+++|+||+|+.....
T Consensus 80 -e~f~~l~-------~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~s 149 (590)
T TIGR00491 80 -EAFTNLR-------KRGGALADLAILIVDINEGFKPQTQEALNILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESF 149 (590)
T ss_pred -HhHHHHH-------HHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHH--cCCCEEEEEECCCccchhhhccCchHHHHH
Confidence 4444332 234679999999999998776665555555555 6799999999999964210
Q ss_pred ------HH--------HHHHHHH-------------hcCCCCeEEEecCCCCCCHHHHHHHHHH
Q 018949 244 ------IA--------KKLEWYE-------------KFTDVDEVIPVSAKYGHGVEDIRDWILT 280 (348)
Q Consensus 244 ------~~--------~~~~~~~-------------~~~~~~~i~~vSA~~g~gi~eL~~~i~~ 280 (348)
+. .....+. ...+..+++++||++|+|+++|..++..
T Consensus 150 ak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 150 SKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 00 0001111 1234468999999999999999998864
No 177
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=4.3e-18 Score=163.23 Aligned_cols=155 Identities=19% Similarity=0.210 Sum_probs=124.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC---CCeeEEEEeCCCCchhhhhhhHHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~l~~~~~~~~ 189 (348)
.|+|.|++||+...|||||+..+.+.+.. .....+.|++.--..+.. +...+.++|||| +..|..++..+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va-~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPG--HeAFt~mRaRG---- 75 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPG--HEAFTAMRARG---- 75 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccc-cccCCceeeEeeeEEEEeccCCCceEEEEcCCc--HHHHHHHHhcC----
Confidence 47789999999999999999999998876 356667788766555554 346899999999 77888887765
Q ss_pred HhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHH-------hcCCCCeEEE
Q 018949 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE-------KFTDVDEVIP 262 (348)
Q Consensus 190 ~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-------~~~~~~~i~~ 262 (348)
..-+|++++|+|+.++...+...-.+.++. .+.|++|++||+|+++..... ...++. .+.+...+++
T Consensus 76 ---a~vtDIaILVVa~dDGv~pQTiEAI~hak~--a~vP~iVAiNKiDk~~~np~~-v~~el~~~gl~~E~~gg~v~~Vp 149 (509)
T COG0532 76 ---ASVTDIAILVVAADDGVMPQTIEAINHAKA--AGVPIVVAINKIDKPEANPDK-VKQELQEYGLVPEEWGGDVIFVP 149 (509)
T ss_pred ---CccccEEEEEEEccCCcchhHHHHHHHHHH--CCCCEEEEEecccCCCCCHHH-HHHHHHHcCCCHhhcCCceEEEE
Confidence 578999999999999999988888888888 899999999999998654322 222222 2334457899
Q ss_pred ecCCCCCCHHHHHHHHHH
Q 018949 263 VSAKYGHGVEDIRDWILT 280 (348)
Q Consensus 263 vSA~~g~gi~eL~~~i~~ 280 (348)
+||++|+|+++|+..+.-
T Consensus 150 vSA~tg~Gi~eLL~~ill 167 (509)
T COG0532 150 VSAKTGEGIDELLELILL 167 (509)
T ss_pred eeccCCCCHHHHHHHHHH
Confidence 999999999999998864
No 178
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.78 E-value=1.1e-17 Score=148.19 Aligned_cols=170 Identities=18% Similarity=0.221 Sum_probs=110.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCcee-eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
...+|+++|++|||||||+++++...+. ...++.+..........+.+...+.+|||+| +..+..+. ..+
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g--~~~~~~~~-------~~~ 78 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAG--QEKFGGLR-------DGY 78 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCC--chhhhhhh-------HHH
Confidence 4458999999999999999877654432 1122233333222222345567899999999 43333332 234
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
+..++++++|+|.++.. .....++...... ..+.|+++|+||+|+........... +....+ ..++++||++|.|
T Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~i~lv~nK~Dl~~~~~~~~~~~-~~~~~~-~~~~e~Sa~~~~~ 155 (215)
T PTZ00132 79 YIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV-CENIPIVLVGNKVDVKDRQVKARQIT-FHRKKN-LQYYDISAKSNYN 155 (215)
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECccCccccCCHHHHH-HHHHcC-CEEEEEeCCCCCC
Confidence 67899999999998654 2222333332222 25789999999999864322122222 222233 3789999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCCCcccC
Q 018949 271 VEDIRDWILTKLPLGPAYYPKDIVS 295 (348)
Q Consensus 271 i~eL~~~i~~~l~~~~~~~~~~~~~ 295 (348)
+++++.+|.+.+...+..+--+.-+
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~ 180 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPA 180 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcc
Confidence 9999999999887777665544444
No 179
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.78 E-value=2.4e-18 Score=145.10 Aligned_cols=156 Identities=24% Similarity=0.334 Sum_probs=105.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
||+++|.++||||||++++.+..+.... ++.+..........+.....+.+||++| +..+..+.. ..+..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g--~~~~~~~~~-------~~~~~ 71 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSG--QERFDSLRD-------IFYRN 71 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETT--SGGGHHHHH-------HHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccc--ccccccccc-------ccccc
Confidence 6999999999999999999987654211 1111222222233334556799999999 444444332 33789
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
+|++|+|+|.++.. .....|+.........+.|++||+||.|+.....+ .+....+....+ .+++++||+++.|+.
T Consensus 72 ~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~ 150 (162)
T PF00071_consen 72 SDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVSAKNGENVK 150 (162)
T ss_dssp ESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEBTTTTTTHH
T ss_pred cccccccccccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEECCCCCCHH
Confidence 99999999997643 44444444333332236899999999998763332 122344444555 699999999999999
Q ss_pred HHHHHHHHhC
Q 018949 273 DIRDWILTKL 282 (348)
Q Consensus 273 eL~~~i~~~l 282 (348)
++|..+.+.+
T Consensus 151 ~~f~~~i~~i 160 (162)
T PF00071_consen 151 EIFQELIRKI 160 (162)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 180
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.78 E-value=5.3e-18 Score=170.33 Aligned_cols=157 Identities=21% Similarity=0.296 Sum_probs=114.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCcee--eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.|+++|++|+|||||+++|.+.... ......+.|.+.....+..++..+.+|||||+ .. +...+...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh--e~-------f~~~~~~g~~ 72 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH--EK-------FISNAIAGGG 72 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH--HH-------HHHHHHhhhc
Confidence 5999999999999999999975421 12234566776666666666788999999994 22 3344556678
Q ss_pred CccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhhHHHH---HHHH-HhcC--CCCeEEEecCCC
Q 018949 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKK---LEWY-EKFT--DVDEVIPVSAKY 267 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~---~~~~-~~~~--~~~~i~~vSA~~ 267 (348)
.+|++++|+|++++...+.......+.. .++| +++|+||+|+.+...+... ...+ .... ...+++++||++
T Consensus 73 ~aD~aILVVDa~~G~~~qT~ehl~il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~t 150 (581)
T TIGR00475 73 GIDAALLVVDADEGVMTQTGEHLAVLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKT 150 (581)
T ss_pred cCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCC
Confidence 9999999999998776655555555555 5678 9999999999876543222 2222 2211 146899999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|+++++..+.+.+..
T Consensus 151 G~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 151 GQGIGELKKELKNLLES 167 (581)
T ss_pred CCCchhHHHHHHHHHHh
Confidence 99999999998876644
No 181
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.78 E-value=3.4e-18 Score=171.95 Aligned_cols=154 Identities=28% Similarity=0.329 Sum_probs=111.5
Q ss_pred cCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEE
Q 018949 122 GKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVV 201 (348)
Q Consensus 122 G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~ 201 (348)
|.+|||||||+|++.+.+. .+++.+++|.+.....+..++..+.+|||||..+.............. .....+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~-l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDY-LLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHH-HhhcCCCEEEE
Confidence 8999999999999999876 478899999998888777778889999999964422222222222222 11357999999
Q ss_pred EecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHh
Q 018949 202 LVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 202 VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~ 281 (348)
|+|+++.... .....+ +.+ .++|+++|+||+|+.+........+.+.+..+ .+++++||++|+|++++++.+.+.
T Consensus 79 VvDat~ler~-l~l~~q-l~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg-~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 79 VVDASNLERN-LYLTLQ-LLE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLG-VPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred EecCCcchhh-HHHHHH-HHh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHHH
Confidence 9999874332 222222 233 57999999999998654433333445555555 489999999999999999999876
Q ss_pred C
Q 018949 282 L 282 (348)
Q Consensus 282 l 282 (348)
.
T Consensus 154 ~ 154 (591)
T TIGR00437 154 I 154 (591)
T ss_pred h
Confidence 5
No 182
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.78 E-value=1.9e-18 Score=140.05 Aligned_cols=167 Identities=18% Similarity=0.212 Sum_probs=115.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCC-CCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-PQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
...+|.++|.+|||||||+-++....+....+. .+..-......+.....++.+|||+| +++++.+ +.++
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG--qErFRtL-------TpSy 80 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG--QERFRTL-------TPSY 80 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccc--hHhhhcc-------CHhH
Confidence 445899999999999999999999887533222 11111112223456677899999999 7776665 5567
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccc--cCCCCEEEEEeccCCCChhhHHHHHH-HHHhcCCCCeEEEecCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH--KDKLPILLVLNKKDLIKPGEIAKKLE-WYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~--~~~~p~ivv~NK~Dl~~~~~~~~~~~-~~~~~~~~~~i~~vSA~~ 267 (348)
++.|.++|+|+|.+... ...+.|+.+ +... ..++-.++|+||+|..+.+.+..... .+.+ ...+-++++||++
T Consensus 81 yRgaqGiIlVYDVT~Rdtf~kLd~W~~E-ld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr-~h~~LFiE~SAkt 158 (209)
T KOG0080|consen 81 YRGAQGIILVYDVTSRDTFVKLDIWLKE-LDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFAR-KHRCLFIECSAKT 158 (209)
T ss_pred hccCceeEEEEEccchhhHHhHHHHHHH-HHhhcCCccHhHhhhcccccchhcccccHHHHHHHHH-hhCcEEEEcchhh
Confidence 89999999999998654 445444433 2222 14556679999999875443322221 2222 2234589999999
Q ss_pred CCCHHHHHHHHHHhCCCCCCCCCC
Q 018949 268 GHGVEDIRDWILTKLPLGPAYYPK 291 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~~~~~~~~ 291 (348)
.+|++..|+.++..+.+.|..+..
T Consensus 159 ~~~V~~~FeelveKIi~tp~l~~~ 182 (209)
T KOG0080|consen 159 RENVQCCFEELVEKIIETPSLWEE 182 (209)
T ss_pred hccHHHHHHHHHHHHhcCcchhhc
Confidence 999999999999998877766554
No 183
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.77 E-value=1.2e-17 Score=149.99 Aligned_cols=157 Identities=20% Similarity=0.221 Sum_probs=110.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee-----------------cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-----------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~-----------------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (348)
+|+++|++|+|||||+++|+.....+. ....+.|.......+.+++.++.+|||||+.+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f--- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF--- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch---
Confidence 489999999999999999986432110 011223344444556778899999999996432
Q ss_pred hhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh--h-HHHHHHHHH----
Q 018949 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--E-IAKKLEWYE---- 252 (348)
Q Consensus 180 ~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~-~~~~~~~~~---- 252 (348)
...+..+++.+|++++|+|++.+.......+...+.. .++|+++++||+|+.... . +.+....+.
T Consensus 78 ------~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~--~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~ 149 (237)
T cd04168 78 ------IAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRK--LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIV 149 (237)
T ss_pred ------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeE
Confidence 2234556789999999999998887766677776666 689999999999987422 1 111111110
Q ss_pred -------------------------------------------------------hcCCCCeEEEecCCCCCCHHHHHHH
Q 018949 253 -------------------------------------------------------KFTDVDEVIPVSAKYGHGVEDIRDW 277 (348)
Q Consensus 253 -------------------------------------------------------~~~~~~~i~~vSA~~g~gi~eL~~~ 277 (348)
......|++..||.++.|+..|++.
T Consensus 150 ~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~ 229 (237)
T cd04168 150 PMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEG 229 (237)
T ss_pred EEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHH
Confidence 0223458888899999999999999
Q ss_pred HHHhCCC
Q 018949 278 ILTKLPL 284 (348)
Q Consensus 278 i~~~l~~ 284 (348)
|.+.+|.
T Consensus 230 ~~~~~p~ 236 (237)
T cd04168 230 ITKLFPT 236 (237)
T ss_pred HHHhcCC
Confidence 9988764
No 184
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.77 E-value=2.4e-17 Score=146.81 Aligned_cols=153 Identities=19% Similarity=0.214 Sum_probs=105.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec-------------CCCCceEE------------------------eEEEEEe
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-------------NKPQTTRH------------------------RILGICS 159 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~-------------~~~~~t~~------------------------~~~~~~~ 159 (348)
+|+++|+.++|||||++++....+.... ...+.|.. .....+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999854331100 00011100 0001233
Q ss_pred CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc--cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccC
Q 018949 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG--INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~--~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~D 237 (348)
..+..+.++||||+.. + ...+...+ ..+|++++|+|+..+....+..+..++.. .++|+++|+||+|
T Consensus 81 ~~~~~i~liDtpG~~~--~-------~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~--~~ip~ivvvNK~D 149 (224)
T cd04165 81 KSSKLVTFIDLAGHER--Y-------LKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALA--LNIPVFVVVTKID 149 (224)
T ss_pred eCCcEEEEEECCCcHH--H-------HHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEECcc
Confidence 4467899999999532 1 12223333 37899999999998888888888887777 6799999999999
Q ss_pred CCChhhHHHHHHHHHhcC----------------------------CCCeEEEecCCCCCCHHHHHHHHHH
Q 018949 238 LIKPGEIAKKLEWYEKFT----------------------------DVDEVIPVSAKYGHGVEDIRDWILT 280 (348)
Q Consensus 238 l~~~~~~~~~~~~~~~~~----------------------------~~~~i~~vSA~~g~gi~eL~~~i~~ 280 (348)
+.+..........+.... ...|+|.+||.+|+|+++|+..|..
T Consensus 150 ~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 987655554444443322 2348999999999999999988864
No 185
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.76 E-value=2.3e-17 Score=153.65 Aligned_cols=169 Identities=22% Similarity=0.256 Sum_probs=116.3
Q ss_pred EEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC------------------------CCeeEEEEeCCCC
Q 018949 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG------------------------PEYQMILYDTPGI 173 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~~~l~DtpG~ 173 (348)
|+++|.||||||||+|++++... .++++|++|..+..+.... ...++.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 68999999999999999999876 4688999998877654331 2367999999998
Q ss_pred chhhhhhhHHHHHHHHHhhccCccEEEEEecCCCC--------------C-chH-------HHH----------------
Q 018949 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA--------------P-ERI-------DEI---------------- 215 (348)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~--------------~-~~~-------~~~---------------- 215 (348)
..... ....+...++..++.||++++|+|++.. + ... ..+
T Consensus 80 v~ga~--~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~ 157 (318)
T cd01899 80 VPGAH--EGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKA 157 (318)
T ss_pred CCCcc--chhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64321 1122334566778999999999999731 0 000 000
Q ss_pred ------------------------HHHhccc----------------------ccCCCCEEEEEeccCCCChhhHHHHHH
Q 018949 216 ------------------------LEEGVGD----------------------HKDKLPILLVLNKKDLIKPGEIAKKLE 249 (348)
Q Consensus 216 ------------------------~~~~~~~----------------------~~~~~p~ivv~NK~Dl~~~~~~~~~~~ 249 (348)
+...+.. +...+|+|+|+||+|+....+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~--- 234 (318)
T cd01899 158 DAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNIS--- 234 (318)
T ss_pred hcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHH---
Confidence 0000000 013579999999999875544332
Q ss_pred HHHhcCCCCeEEEecCCCCCCHHHHHH-HHHHhCCCCCCCCCCc
Q 018949 250 WYEKFTDVDEVIPVSAKYGHGVEDIRD-WILTKLPLGPAYYPKD 292 (348)
Q Consensus 250 ~~~~~~~~~~i~~vSA~~g~gi~eL~~-~i~~~l~~~~~~~~~~ 292 (348)
.+.......+++++||+.+.|+++|.+ .+.+.+++.+++....
T Consensus 235 ~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~~ 278 (318)
T cd01899 235 KLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEITD 278 (318)
T ss_pred HHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceecc
Confidence 222333455799999999999999998 6999999877654333
No 186
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.76 E-value=1.8e-17 Score=166.77 Aligned_cols=156 Identities=26% Similarity=0.310 Sum_probs=105.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceee--------ecC------CCCceEEeEEEEEe-----CCCeeEEEEeCCCCchhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSI--------VTN------KPQTTRHRILGICS-----GPEYQMILYDTPGIIEKK 177 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~--------~~~------~~~~t~~~~~~~~~-----~~~~~~~l~DtpG~~~~~ 177 (348)
+|+|+|++++|||||+++|+.....+ ..+ ..+.|.......+. ...+.+++|||||+.+
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d-- 82 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD-- 82 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH--
Confidence 79999999999999999998643211 111 12444443322222 2347899999999643
Q ss_pred hhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCC
Q 018949 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV 257 (348)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 257 (348)
+ ...+..++..||++|+|+|++++.+.+....+..... .+.|+++|+||+|+..... ......+....+.
T Consensus 83 F-------~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--~~ipiIiViNKiDl~~~~~-~~~~~el~~~lg~ 152 (595)
T TIGR01393 83 F-------SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--NDLEIIPVINKIDLPSADP-ERVKKEIEEVIGL 152 (595)
T ss_pred H-------HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCCccCH-HHHHHHHHHHhCC
Confidence 2 2234456789999999999998775544333322223 5789999999999975321 2222333333332
Q ss_pred --CeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 258 --DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 258 --~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
..++++||++|.|+++|+++|.+.++.
T Consensus 153 ~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 153 DASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred CcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 258999999999999999999998865
No 187
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.76 E-value=8.3e-18 Score=163.96 Aligned_cols=151 Identities=21% Similarity=0.178 Sum_probs=104.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeee------------------------------cCCCCceEEeEEEEEeCCCe
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV------------------------------TNKPQTTRHRILGICSGPEY 163 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~ 163 (348)
...+|+++|++|+|||||+++|++....+. ...+++|++.....+..++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 345899999999999999999985432211 11568888888888888899
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCC--CCchHHHHHHHhcccccCC-CCEEEEEeccCCCC
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK--APERIDEILEEGVGDHKDK-LPILLVLNKKDLIK 240 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~--~~~~~~~~~~~~~~~~~~~-~p~ivv~NK~Dl~~ 240 (348)
.+.+|||||+.+ + ...+...+..+|++++|+|+++ +...+.......+.. .+ .|+++|+||+|+..
T Consensus 85 ~i~liDtpG~~~--~-------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~--~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 85 YFTIVDCPGHRD--F-------VKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART--LGINQLIVAINKMDAVN 153 (425)
T ss_pred EEEEEECCCccc--c-------hhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH--cCCCeEEEEEEcccccc
Confidence 999999999532 1 1223344678999999999987 665555555555544 34 46899999999975
Q ss_pred h--hhHHH---HHHHHHhcCC----CCeEEEecCCCCCCHHHHH
Q 018949 241 P--GEIAK---KLEWYEKFTD----VDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 241 ~--~~~~~---~~~~~~~~~~----~~~i~~vSA~~g~gi~eL~ 275 (348)
. ..... .+..+....+ ..+++++||++|.|++++.
T Consensus 154 ~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 154 YDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 2 11221 1222211222 3579999999999998743
No 188
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.76 E-value=5.2e-18 Score=152.89 Aligned_cols=157 Identities=31% Similarity=0.399 Sum_probs=119.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.|++|||||+|+|.+.+-. +..++.||..+..+++.+++..++++|+||+......... -..++....+.|
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~se-va~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~g--rG~~vlsv~R~A 141 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKSE-VADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRG--RGRQVLSVARNA 141 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCCcc-ccccCceecccccceEeecCceEEEEcCcccccCcccCCC--CcceeeeeeccC
Confidence 8999999999999999999998866 6899999999999999999999999999999875433221 113455668999
Q ss_pred cEEEEEecCCCCCchHHH-------------------------------------------HHHHhcc------------
Q 018949 197 DCIVVLVDACKAPERIDE-------------------------------------------ILEEGVG------------ 221 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~-------------------------------------------~~~~~~~------------ 221 (348)
|++++|+|+..+....+. .+...++
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir 221 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR 221 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence 999999999865421111 1111111
Q ss_pred -------------cccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 222 -------------DHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 222 -------------~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
....-+|.++|+||+|++...+....... . .++++||..+.|+++|.+.|.+.+.
T Consensus 222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~----~---~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 222 EDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARK----P---NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred cCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhc----c---ceEEEecccCCCHHHHHHHHHHhhC
Confidence 11124799999999999986554443322 2 6899999999999999999998773
No 189
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.75 E-value=4.7e-17 Score=164.07 Aligned_cols=157 Identities=17% Similarity=0.165 Sum_probs=112.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCcee--eecCCCCceEEeEEEEEeC-CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~--~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.|+++|++++|||||+++|.|.... ......+.|.......+.. ++..+.+|||||+ .. +...+...+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh--e~-------fi~~m~~g~ 72 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH--EK-------FLSNMLAGV 72 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH--HH-------HHHHHHHHh
Confidence 5899999999999999999985421 1233356666654444433 4567899999995 22 234455667
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhhHHHHHHHHHhc---C--CCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKKLEWYEKF---T--DVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~~~~~~~---~--~~~~i~~vSA~~ 267 (348)
..+|++++|+|++.+...+.......+.. .++| +++|+||+|+.+..........+... . ...+++++||++
T Consensus 73 ~~~D~~lLVVda~eg~~~qT~ehl~il~~--lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~t 150 (614)
T PRK10512 73 GGIDHALLVVACDDGVMAQTREHLAILQL--TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATE 150 (614)
T ss_pred hcCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCC
Confidence 89999999999998887777777666665 4566 57999999998754443333333222 1 235899999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|+++|++.|.+....
T Consensus 151 G~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 151 GRGIDALREHLLQLPER 167 (614)
T ss_pred CCCCHHHHHHHHHhhcc
Confidence 99999999999876543
No 190
>PRK09866 hypothetical protein; Provisional
Probab=99.75 E-value=8e-17 Score=158.02 Aligned_cols=115 Identities=20% Similarity=0.257 Sum_probs=81.7
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh-
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP- 241 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~- 241 (348)
.+++++||||+.......+...+.+ .+..+|+|+||+|++......+..+.+.++..+.+.|+++|+||+|+.+.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dre 305 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRN 305 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcc
Confidence 3589999999864333334444433 58999999999999887666667777777663233699999999999752
Q ss_pred ----hhHHHHHHHH--HhcCCCCeEEEecCCCCCCHHHHHHHHHHh
Q 018949 242 ----GEIAKKLEWY--EKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 242 ----~~~~~~~~~~--~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~ 281 (348)
..+....... .....+..++++||+.|.|+++|++.|...
T Consensus 306 eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 306 SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 2223332222 223345679999999999999999999873
No 191
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.75 E-value=3.8e-17 Score=149.35 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=86.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCce-----eee------------cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKL-----SIV------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~-----~~~------------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (348)
+|+++|++|+|||||+++|+.... ..+ ....+.|.......+.+++.+++++||||+.+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d---- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD---- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence 489999999999999999973211 111 12335566666666777889999999999643
Q ss_pred hhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 180 ~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
+...+..+++.+|++++|+|+..+.......+...+.. .++|+++++||+|+.+
T Consensus 77 -----f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~--~~~p~ivviNK~D~~~ 130 (270)
T cd01886 77 -----FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADR--YNVPRIAFVNKMDRTG 130 (270)
T ss_pred -----HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 22345567889999999999999887777777777666 6799999999999864
No 192
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.75 E-value=3.2e-17 Score=133.72 Aligned_cols=139 Identities=25% Similarity=0.398 Sum_probs=98.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
||+++|+.|+|||||+++|.+.... ...|.... +.=.++|||| +.-. ...+.........+|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~-----~~KTq~i~--------~~~~~IDTPG--EyiE---~~~~y~aLi~ta~da 64 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR-----YKKTQAIE--------YYDNTIDTPG--EYIE---NPRFYHALIVTAQDA 64 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC-----cCccceeE--------ecccEEECCh--hhee---CHHHHHHHHHHHhhC
Confidence 8999999999999999999997643 11222211 1124599999 3211 122334455556799
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC-ChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
|+|++|.|++.+.......+... -++|+|=|+||+|+. +..+++.....++.. +...+|.+|+.+|+|+++|+
T Consensus 65 d~V~ll~dat~~~~~~pP~fa~~-----f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~a-G~~~if~vS~~~~eGi~eL~ 138 (143)
T PF10662_consen 65 DVVLLLQDATEPRSVFPPGFASM-----FNKPVIGVITKIDLPSDDANIERAKKWLKNA-GVKEIFEVSAVTGEGIEELK 138 (143)
T ss_pred CEEEEEecCCCCCccCCchhhcc-----cCCCEEEEEECccCccchhhHHHHHHHHHHc-CCCCeEEEECCCCcCHHHHH
Confidence 99999999998765444444433 457999999999999 444555544555444 55578999999999999999
Q ss_pred HHHH
Q 018949 276 DWIL 279 (348)
Q Consensus 276 ~~i~ 279 (348)
++|.
T Consensus 139 ~~L~ 142 (143)
T PF10662_consen 139 DYLE 142 (143)
T ss_pred HHHh
Confidence 9885
No 193
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.4e-17 Score=141.44 Aligned_cols=158 Identities=18% Similarity=0.221 Sum_probs=116.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
..+|+++|.++||||-|+.++..+.+...+ .+.+.+.......++.+.+..++|||+| +++++.+ ...|+
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAG--QERyrAi-------tSaYY 84 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAG--QERYRAI-------TSAYY 84 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccc--hhhhccc-------cchhh
Confidence 348999999999999999999999887533 3444444455556677778899999999 6665544 44668
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
+.|-++++|+|.+... +....|+.++......++++++|+||+||...+.+. +....+....+. .++++||..+.|
T Consensus 85 rgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l-~f~EtSAl~~tN 163 (222)
T KOG0087|consen 85 RGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGL-FFLETSALDATN 163 (222)
T ss_pred cccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCc-eEEEeccccccc
Confidence 9999999999998654 555556555544444789999999999998644332 222333333333 789999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
+++.|..+...+
T Consensus 164 Ve~aF~~~l~~I 175 (222)
T KOG0087|consen 164 VEKAFERVLTEI 175 (222)
T ss_pred HHHHHHHHHHHH
Confidence 999998877654
No 194
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.74 E-value=7.6e-17 Score=131.35 Aligned_cols=156 Identities=22% Similarity=0.301 Sum_probs=110.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
|..+|.++|..|+||||++++|.+.....+++ |.-.....+..+++.+++||..| +.. +.+.+.+|+
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~~~~L~iwDvGG--q~~-------lr~~W~nYf 81 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYKGYTLNIWDVGG--QKT-------LRSYWKNYF 81 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCC----ccceeeEEEEecceEEEEEEcCC--cch-------hHHHHHHhh
Confidence 45589999999999999999999987443333 34444555667789999999999 433 345577889
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCCh---hhHHHHH--HHHHhcCCCCeEEEecC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKP---GEIAKKL--EWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~---~~~~~~~--~~~~~~~~~~~i~~vSA 265 (348)
..+|++|||+|+++.. ++....+...+.. ...+.|++|+.||.|+... .++.... ..+. ...-++++-|||
T Consensus 82 estdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~-ks~~~~l~~cs~ 160 (185)
T KOG0073|consen 82 ESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELA-KSHHWRLVKCSA 160 (185)
T ss_pred hccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhc-cccCceEEEEec
Confidence 9999999999997654 2222333333322 1267899999999999843 2332221 1221 223358999999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 018949 266 KYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (348)
.+|+++.+-++|+...+.
T Consensus 161 ~tge~l~~gidWL~~~l~ 178 (185)
T KOG0073|consen 161 VTGEDLLEGIDWLCDDLM 178 (185)
T ss_pred cccccHHHHHHHHHHHHH
Confidence 999999999999887653
No 195
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.74 E-value=6.2e-17 Score=141.47 Aligned_cols=173 Identities=14% Similarity=0.206 Sum_probs=117.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh--hhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~l~~~~~~~~~~~~ 193 (348)
+|+++|.+|+|||||+|+|+|.+..... ..++.|...........+..+.++||||+.+... ..+...+...+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~ 81 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSA 81 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcC
Confidence 7999999999999999999998765333 2456677666665566788999999999876431 233444445555556
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccc-c--CCCCEEEEEeccCCCChhhHHHH--------HHHHHhcCCCCeEEE
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDH-K--DKLPILLVLNKKDLIKPGEIAKK--------LEWYEKFTDVDEVIP 262 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~-~--~~~p~ivv~NK~Dl~~~~~~~~~--------~~~~~~~~~~~~i~~ 262 (348)
..+|+++||+|+.+ ....+....+.++.. + .-.++++|+|+.|......+++. ...+....+. ++.
T Consensus 82 ~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r--~~~ 158 (196)
T cd01852 82 PGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGR--YVA 158 (196)
T ss_pred CCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCe--EEE
Confidence 78999999999987 655555555544432 2 12688999999998764333222 2222222222 223
Q ss_pred e-----cCCCCCCHHHHHHHHHHhCCC-CCCCCCCc
Q 018949 263 V-----SAKYGHGVEDIRDWILTKLPL-GPAYYPKD 292 (348)
Q Consensus 263 v-----SA~~g~gi~eL~~~i~~~l~~-~~~~~~~~ 292 (348)
. |+..+.++.+|++.|.++++. .++.|..+
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~ 194 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKENGGKPYTND 194 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 3 356788999999999999986 66666543
No 196
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.74 E-value=1.9e-17 Score=147.23 Aligned_cols=146 Identities=19% Similarity=0.184 Sum_probs=96.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCcee------------------------------eecCCCCceEEeEEEEEeCCCeeEE
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLS------------------------------IVTNKPQTTRHRILGICSGPEYQMI 166 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~~~~ 166 (348)
+|+++|++++|||||+.+|+..... ......++|++.....+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 3899999999999999998632110 0112345677777777788889999
Q ss_pred EEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCC-------CchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 167 l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~-------~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
+|||||+.+ +...+...+..+|++|+|+|++.+ ...+........... ...|+++|+||+|+.
T Consensus 81 liDtpG~~~---------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiivvNK~Dl~ 150 (219)
T cd01883 81 ILDAPGHRD---------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL-GVKQLIVAVNKMDDV 150 (219)
T ss_pred EEECCChHH---------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc-CCCeEEEEEEccccc
Confidence 999999532 123344557889999999999873 222223333333331 236899999999998
Q ss_pred C----hhhHHHHHHHHH---hcCC----CCeEEEecCCCCCCHH
Q 018949 240 K----PGEIAKKLEWYE---KFTD----VDEVIPVSAKYGHGVE 272 (348)
Q Consensus 240 ~----~~~~~~~~~~~~---~~~~----~~~i~~vSA~~g~gi~ 272 (348)
. ..........+. ...+ ..+++++||++|.|++
T Consensus 151 ~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 151 TVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 3 222233333222 1222 3579999999999997
No 197
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.74 E-value=7e-17 Score=162.58 Aligned_cols=157 Identities=25% Similarity=0.299 Sum_probs=106.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceee--------ec------CCCCceEEeEEEEE-----eCCCeeEEEEeCCCCchh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSI--------VT------NKPQTTRHRILGIC-----SGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~--------~~------~~~~~t~~~~~~~~-----~~~~~~~~l~DtpG~~~~ 176 (348)
.+|+|+|+.++|||||+++|+...... .. ...+.|.......+ +..++.+++|||||+.+.
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 389999999999999999997632111 01 11233333222222 234678999999996442
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCC
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (348)
. ..+..++..||++|+|+|++++.+.+....+..... .+.|+++|+||+|+..... ......+....+
T Consensus 88 ~---------~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--~~lpiIvViNKiDl~~a~~-~~v~~ei~~~lg 155 (600)
T PRK05433 88 S---------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--NDLEIIPVLNKIDLPAADP-ERVKQEIEDVIG 155 (600)
T ss_pred H---------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEEEECCCCCcccH-HHHHHHHHHHhC
Confidence 1 234455789999999999998876555444333333 5789999999999875321 222233333333
Q ss_pred C--CeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 257 V--DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 257 ~--~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
. ..++++||++|.|+++|+++|.+.++.
T Consensus 156 ~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 156 IDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred CCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 2 258999999999999999999998865
No 198
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.73 E-value=1.5e-16 Score=145.35 Aligned_cols=114 Identities=22% Similarity=0.234 Sum_probs=80.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee---------------cCC------CCceEEeEEEEEeCCCeeEEEEeCCCCch
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV---------------TNK------PQTTRHRILGICSGPEYQMILYDTPGIIE 175 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~---------------~~~------~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (348)
+|+++|++|+|||||+++|+.....+. .+. .+.+.......+.+++..+++|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 799999999999999999985322111 000 11222333345677889999999999533
Q ss_pred hhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
+. ..+..+++.+|++|+|+|++.+.......++..... .++|+++++||+|+...
T Consensus 84 --f~-------~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~--~~~P~iivvNK~D~~~a 138 (267)
T cd04169 84 --FS-------EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL--RGIPIITFINKLDREGR 138 (267)
T ss_pred --HH-------HHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh--cCCCEEEEEECCccCCC
Confidence 11 224455688999999999998776666666666555 67999999999998643
No 199
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.73 E-value=8.5e-17 Score=132.05 Aligned_cols=150 Identities=21% Similarity=0.181 Sum_probs=96.3
Q ss_pred EEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCcc
Q 018949 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (348)
Q Consensus 120 i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad 197 (348)
++|++|+|||||+|++.+..... .....+...... ......+..+.+|||||+... .. .....+..+|
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~-------~~~~~~~~~~ 70 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-EEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERF--RS-------LRRLYYRGAD 70 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-cccccchhheeeEEEEECCEEEEEEEEecCChHHH--Hh-------HHHHHhcCCC
Confidence 57999999999999999876521 111111122222 222233578999999995332 11 1134578999
Q ss_pred EEEEEecCCCCCchHHHHH---HHhcccccCCCCEEEEEeccCCCChhhHHHHH-HHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 198 CIVVLVDACKAPERIDEIL---EEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 198 ~iv~VvD~~~~~~~~~~~~---~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
++++|+|++.+........ .........+.|+++|+||+|+.......... ..........+++++|+..+.|+.+
T Consensus 71 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 150 (157)
T cd00882 71 GIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEE 150 (157)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHH
Confidence 9999999987653222211 11122223789999999999998654433321 2222233446899999999999999
Q ss_pred HHHHHH
Q 018949 274 IRDWIL 279 (348)
Q Consensus 274 L~~~i~ 279 (348)
++++|.
T Consensus 151 ~~~~l~ 156 (157)
T cd00882 151 LFEELA 156 (157)
T ss_pred HHHHHh
Confidence 999875
No 200
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.73 E-value=9.3e-17 Score=161.13 Aligned_cols=156 Identities=24% Similarity=0.284 Sum_probs=101.9
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC------------------CCeeEEEEeCCCCc
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG------------------PEYQMILYDTPGII 174 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------~~~~~~l~DtpG~~ 174 (348)
.|++.|+++|++|+|||||+++|.+..... ....+.|++.-...+.. .-..+.+|||||+
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~-~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~- 81 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAA-KEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH- 81 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccc-CCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh-
Confidence 478899999999999999999998875431 11122232211111100 0012789999995
Q ss_pred hhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh-----------
Q 018949 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE----------- 243 (348)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----------- 243 (348)
..+..+. ...+..+|++++|+|++++...+.......+.. .++|+++++||+|+.....
T Consensus 82 -e~f~~~~-------~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~ 151 (586)
T PRK04004 82 -EAFTNLR-------KRGGALADIAILVVDINEGFQPQTIEAINILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESI 151 (586)
T ss_pred -HHHHHHH-------HHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHH
Confidence 3443332 234678999999999998776666555566555 6899999999999852100
Q ss_pred ------HH--------HHHHHHH-------------hcCCCCeEEEecCCCCCCHHHHHHHHHH
Q 018949 244 ------IA--------KKLEWYE-------------KFTDVDEVIPVSAKYGHGVEDIRDWILT 280 (348)
Q Consensus 244 ------~~--------~~~~~~~-------------~~~~~~~i~~vSA~~g~gi~eL~~~i~~ 280 (348)
.. +....+. ...+..+++++||++|+|+++|+..+..
T Consensus 152 ~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 152 EKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 0111222 1224468999999999999999988753
No 201
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.3e-16 Score=152.11 Aligned_cols=156 Identities=20% Similarity=0.215 Sum_probs=124.0
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe-CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
.|+|.|.|||+...|||||+.+|.+..++. ....|.|++.--..+. ..|..++++|||| +..|..++..+
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA-~E~GGITQhIGAF~V~~p~G~~iTFLDTPG--HaAF~aMRaRG------ 221 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAA-GEAGGITQHIGAFTVTLPSGKSITFLDTPG--HAAFSAMRARG------ 221 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceeh-hhcCCccceeceEEEecCCCCEEEEecCCc--HHHHHHHHhcc------
Confidence 588899999999999999999999998873 5566777765332222 2678899999999 66777776654
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHH-------HHHhcCCCCeEEEec
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLE-------WYEKFTDVDEVIPVS 264 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~-------~~~~~~~~~~i~~vS 264 (348)
..-+|++|+||-+.++...+........+. .++|+|+++||+|.+.... +.... .+....+..+++++|
T Consensus 222 -A~vtDIvVLVVAadDGVmpQT~EaIkhAk~--A~VpiVvAinKiDkp~a~p-ekv~~eL~~~gi~~E~~GGdVQvipiS 297 (683)
T KOG1145|consen 222 -ANVTDIVVLVVAADDGVMPQTLEAIKHAKS--ANVPIVVAINKIDKPGANP-EKVKRELLSQGIVVEDLGGDVQVIPIS 297 (683)
T ss_pred -CccccEEEEEEEccCCccHhHHHHHHHHHh--cCCCEEEEEeccCCCCCCH-HHHHHHHHHcCccHHHcCCceeEEEee
Confidence 678899999999999998888887777777 8999999999999886442 22222 233456777999999
Q ss_pred CCCCCCHHHHHHHHHHh
Q 018949 265 AKYGHGVEDIRDWILTK 281 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~ 281 (348)
|++|+|++.|-+++.-+
T Consensus 298 Al~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 298 ALTGENLDLLEEAILLL 314 (683)
T ss_pred cccCCChHHHHHHHHHH
Confidence 99999999999987643
No 202
>PRK10218 GTP-binding protein; Provisional
Probab=99.72 E-value=2e-16 Score=158.75 Aligned_cols=159 Identities=18% Similarity=0.207 Sum_probs=114.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeee---------------cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV---------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 180 (348)
.+|+|+|+.++|||||+++|+....... ....+.|.......+.+++..+++|||||+.+ +.
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d--f~- 82 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD--FG- 82 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch--hH-
Confidence 3899999999999999999986321111 12334555555566778889999999999643 22
Q ss_pred hHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh---HHHHHHHHHh----
Q 018949 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEK---- 253 (348)
Q Consensus 181 l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~~~~~~~---- 253 (348)
..+..++..+|++|+|+|++.+...+...++..+.. .++|.++|+||+|+..... +.+....+..
T Consensus 83 ------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~--~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~ 154 (607)
T PRK10218 83 ------GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA--YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDAT 154 (607)
T ss_pred ------HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH--cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcc
Confidence 234456789999999999998877666666666555 6799999999999875321 2222222221
Q ss_pred -cCCCCeEEEecCCCCC----------CHHHHHHHHHHhCCCC
Q 018949 254 -FTDVDEVIPVSAKYGH----------GVEDIRDWILTKLPLG 285 (348)
Q Consensus 254 -~~~~~~i~~vSA~~g~----------gi~eL~~~i~~~l~~~ 285 (348)
.....|++++||++|. |+..|++.|.+.++..
T Consensus 155 ~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 155 DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 1112589999999998 6899999999998753
No 203
>CHL00071 tufA elongation factor Tu
Probab=99.72 E-value=1.9e-16 Score=153.37 Aligned_cols=145 Identities=19% Similarity=0.174 Sum_probs=103.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceee---------------ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (348)
..+|+++|++++|||||+++|++..... .....+.|.+.....+..++..+.++||||+.
T Consensus 12 ~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~----- 86 (409)
T CHL00071 12 HVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA----- 86 (409)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH-----
Confidence 3489999999999999999998742211 11225666666555566677889999999953
Q ss_pred hhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhhHHH-----HHHHHHh
Q 018949 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-----KLEWYEK 253 (348)
Q Consensus 180 ~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~-----~~~~~~~ 253 (348)
.+...+...+..+|++++|+|+..+...+...+...+.. .++| +|+|+||+|+.+..+..+ ....+..
T Consensus 87 ----~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~--~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~ 160 (409)
T CHL00071 87 ----DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQ--VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSK 160 (409)
T ss_pred ----HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHH
Confidence 233445566789999999999998887777777777766 6788 778999999986543221 1122222
Q ss_pred cC---CCCeEEEecCCCCCC
Q 018949 254 FT---DVDEVIPVSAKYGHG 270 (348)
Q Consensus 254 ~~---~~~~i~~vSA~~g~g 270 (348)
.. ...+++++||.+|.|
T Consensus 161 ~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 161 YDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred hCCCCCcceEEEcchhhccc
Confidence 11 136899999999874
No 204
>PRK12736 elongation factor Tu; Reviewed
Probab=99.72 E-value=2.3e-16 Score=152.14 Aligned_cols=160 Identities=18% Similarity=0.143 Sum_probs=113.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCcee---------------eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (348)
...+|+++|++++|||||+++|++.... ......+.|.+.....+..++..+.++||||+.+
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~--- 87 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD--- 87 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH---
Confidence 3448999999999999999999863110 0112456677766566666778899999999531
Q ss_pred hhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhhHHH-HHHHHHh---
Q 018949 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-KLEWYEK--- 253 (348)
Q Consensus 179 ~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~-~~~~~~~--- 253 (348)
+...+...+..+|++++|+|+..+...+...++..+.. .++| +|+|+||+|+.+..+..+ ....+..
T Consensus 88 ------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~--~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~ 159 (394)
T PRK12736 88 ------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ--VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLS 159 (394)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 22344555678999999999998887777777777666 5788 678999999985433322 1112221
Q ss_pred cCC----CCeEEEecCCCCC--------CHHHHHHHHHHhCCC
Q 018949 254 FTD----VDEVIPVSAKYGH--------GVEDIRDWILTKLPL 284 (348)
Q Consensus 254 ~~~----~~~i~~vSA~~g~--------gi~eL~~~i~~~l~~ 284 (348)
..+ ..+++++||++|. ++.+|++.+.+.++.
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~ 202 (394)
T PRK12736 160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPT 202 (394)
T ss_pred HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCC
Confidence 122 3589999999983 688999999887763
No 205
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.72 E-value=1.3e-16 Score=160.09 Aligned_cols=158 Identities=19% Similarity=0.222 Sum_probs=114.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceee-----e----------cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSI-----V----------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~-----~----------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l 181 (348)
+|+|+|+.++|||||+++|+...... + ....+.|.......+.+++..+++|||||+.+ +
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~D--F--- 77 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHAD--F--- 77 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHH--H---
Confidence 79999999999999999998532110 0 11234555555556778889999999999533 2
Q ss_pred HHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh--hH-HHHHHHHHhc----
Q 018949 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EI-AKKLEWYEKF---- 254 (348)
Q Consensus 182 ~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~-~~~~~~~~~~---- 254 (348)
...+..++..+|++++|+|+..+...+...++..+.. .++|+|+|+||+|+.... ++ .+....+...
T Consensus 78 ----~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~--~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~ 151 (594)
T TIGR01394 78 ----GGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADD 151 (594)
T ss_pred ----HHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH--CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccc
Confidence 2334566789999999999998887777777776666 679999999999986532 22 2222222211
Q ss_pred -CCCCeEEEecCCCCC----------CHHHHHHHHHHhCCCC
Q 018949 255 -TDVDEVIPVSAKYGH----------GVEDIRDWILTKLPLG 285 (348)
Q Consensus 255 -~~~~~i~~vSA~~g~----------gi~eL~~~i~~~l~~~ 285 (348)
....|++++||++|. |+..|++.|.+.++..
T Consensus 152 e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 152 EQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred ccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 112479999999995 8999999999998753
No 206
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=5e-17 Score=130.18 Aligned_cols=156 Identities=20% Similarity=0.229 Sum_probs=109.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+|+++|..|||||.|+.++...-+.+. ..+.+..-......+..+..++.+|||+| +++++++ +.+|++.
T Consensus 9 kivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtag--qerfrsi-------tqsyyrs 79 (213)
T KOG0095|consen 9 KIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAG--QERFRSI-------TQSYYRS 79 (213)
T ss_pred EEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccc--hHHHHHH-------HHHHhhh
Confidence 899999999999999999987665421 12222222223334566778999999999 6666554 5677899
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHH-HHHHhcCCCCeEEEecCCCCCCHH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL-EWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~-~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
|+++|+|+|.+..+ ....+|+.+.-.-...++--|+|+||+|+.+.+++...+ ..+... ...-++++||+..+|++
T Consensus 80 ahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~-qdmyfletsakea~nve 158 (213)
T KOG0095|consen 80 AHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEA-QDMYFLETSAKEADNVE 158 (213)
T ss_pred cceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHh-hhhhhhhhcccchhhHH
Confidence 99999999997544 555666655433322445568999999998876665443 233322 22246899999999999
Q ss_pred HHHHHHHHhC
Q 018949 273 DIRDWILTKL 282 (348)
Q Consensus 273 eL~~~i~~~l 282 (348)
.||..+.-.+
T Consensus 159 ~lf~~~a~rl 168 (213)
T KOG0095|consen 159 KLFLDLACRL 168 (213)
T ss_pred HHHHHHHHHH
Confidence 9998876544
No 207
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.71 E-value=2.5e-16 Score=144.35 Aligned_cols=113 Identities=25% Similarity=0.278 Sum_probs=79.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee---cCCC--------------CceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV---TNKP--------------QTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~---~~~~--------------~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (348)
+|+++|++|+|||||+++|++...... .... +.|.......+.+++..+++|||||..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~---- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYAD---- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHH----
Confidence 489999999999999999975432110 0011 2222333345566788999999999532
Q ss_pred hhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 180 ~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
+...+..++..+|++++|+|++.+.......++..+.. .++|+++|+||+|+..
T Consensus 77 -----f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~--~~~p~iivvNK~D~~~ 130 (268)
T cd04170 77 -----FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADE--AGIPRIIFINKMDRER 130 (268)
T ss_pred -----HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCccCC
Confidence 12334456789999999999998776665555555555 6799999999999864
No 208
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=7.8e-17 Score=142.72 Aligned_cols=171 Identities=24% Similarity=0.270 Sum_probs=123.1
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+.+.+|.++|.+|+|||||||+|++.....++..+.++.........+++..+++|||||+++.... +......++.+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~--D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDK--DAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhh--hHHHHHHHHHH
Confidence 3555788999999999999999998776666666656655555555666778999999999774322 33345567777
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh----------------hHHHHHHHHHh-cC
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----------------EIAKKLEWYEK-FT 255 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~----------------~~~~~~~~~~~-~~ 255 (348)
+...|++++++|+.++.-..+..+...+.....+.|+++++|.+|...+. .+++....+.+ ..
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q 194 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQ 194 (296)
T ss_pred hhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 89999999999998877444444444333333568999999999975431 11222222222 22
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Q 018949 256 DVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 256 ~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~ 285 (348)
...|++.+|+..+.|+++|..++.+.++..
T Consensus 195 ~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 195 EVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred hcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 345889999999999999999999998753
No 209
>PLN03127 Elongation factor Tu; Provisional
Probab=99.71 E-value=3.8e-16 Score=152.24 Aligned_cols=159 Identities=19% Similarity=0.186 Sum_probs=112.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC------ceee---------ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLSI---------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~------~~~~---------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (348)
...+|+++|++++|||||+++|.+. .... .....++|.+.....+..++.++.++||||+.+
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~--- 136 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD--- 136 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc---
Confidence 3448999999999999999999732 1111 122367788877777777788999999999632
Q ss_pred hhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhhHHHHH-HHHH---h
Q 018949 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKKL-EWYE---K 253 (348)
Q Consensus 179 ~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~~-~~~~---~ 253 (348)
++..+...+..+|++++|+|+..+...++..+...+.. .++| +|+|+||+|+.+..+..+.. ..+. .
T Consensus 137 ------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~--~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~ 208 (447)
T PLN03127 137 ------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQ--VGVPSLVVFLNKVDVVDDEELLELVEMELRELLS 208 (447)
T ss_pred ------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 23334444567999999999998887777777777776 6789 47899999998644332222 1222 1
Q ss_pred cC----CCCeEEEecCC---CCCC-------HHHHHHHHHHhCC
Q 018949 254 FT----DVDEVIPVSAK---YGHG-------VEDIRDWILTKLP 283 (348)
Q Consensus 254 ~~----~~~~i~~vSA~---~g~g-------i~eL~~~i~~~l~ 283 (348)
.. ...|++++||. +|.| +.+|++.+.+.++
T Consensus 209 ~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 209 FYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 11 23588999886 4545 7888888888765
No 210
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.71 E-value=2.8e-16 Score=152.03 Aligned_cols=160 Identities=19% Similarity=0.218 Sum_probs=101.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee--ecCCCCceEEeEE--------------------EEEeC------CCeeE
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRIL--------------------GICSG------PEYQM 165 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~--~~~~~~~t~~~~~--------------------~~~~~------~~~~~ 165 (348)
...+|+++|++++|||||+++|.+..... .....+.|...-. ..++. .+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 34589999999999999999997642110 0111112211110 00011 14679
Q ss_pred EEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH
Q 018949 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (348)
Q Consensus 166 ~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~ 244 (348)
.+|||||+. . +...+...+..+|++++|+|++++. ..+....+..+... ...|+++|+||+|+.+....
T Consensus 83 ~liDtPGh~--~-------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~~ 152 (406)
T TIGR03680 83 SFVDAPGHE--T-------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-GIKNIVIVQNKIDLVSKEKA 152 (406)
T ss_pred EEEECCCHH--H-------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-CCCeEEEEEEccccCCHHHH
Confidence 999999942 2 2233445567899999999999765 44444444444432 23578999999999865433
Q ss_pred HHHHHHHHhcC-----CCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 245 AKKLEWYEKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 245 ~~~~~~~~~~~-----~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
......+.... ...+++++||++|.|+++|+++|...++
T Consensus 153 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 153 LENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 22222222211 2358999999999999999999998765
No 211
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.71 E-value=7.2e-17 Score=129.13 Aligned_cols=154 Identities=20% Similarity=0.278 Sum_probs=110.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCce-EEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT-RHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t-~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+.+|+|.+|||||||+-++....+. ..+..|+ .+..... ++++.+.+.+|||+| ++.++.+ +..++
T Consensus 10 kllIigDsgVGKssLl~rF~ddtFs--~sYitTiGvDfkirTv~i~G~~VkLqIwDtAG--qErFrti-------tstyy 78 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTFS--GSYITTIGVDFKIRTVDINGDRVKLQIWDTAG--QERFRTI-------TSTYY 78 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhcccc--cceEEEeeeeEEEEEeecCCcEEEEEEeeccc--HHHHHHH-------HHHHc
Confidence 6889999999999999999988775 2233232 2233333 445667899999999 6655443 44568
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
+..+++++|+|.+++. ....+|+.+. +.....+|-++|+||.|.+....+. +....+....+. .+|++||+..+|
T Consensus 79 rgthgv~vVYDVTn~ESF~Nv~rWLeei-~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgi-e~FETSaKe~~N 156 (198)
T KOG0079|consen 79 RGTHGVIVVYDVTNGESFNNVKRWLEEI-RNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGI-ELFETSAKENEN 156 (198)
T ss_pred cCCceEEEEEECcchhhhHhHHHHHHHH-HhcCccccceecccCCCCccceeeehHHHHHHHHhcCc-hheehhhhhccc
Confidence 9999999999999765 4444454444 4444789999999999998765332 222333333343 689999999999
Q ss_pred HHHHHHHHHHhCC
Q 018949 271 VEDIRDWILTKLP 283 (348)
Q Consensus 271 i~eL~~~i~~~l~ 283 (348)
++..|..|.+++.
T Consensus 157 vE~mF~cit~qvl 169 (198)
T KOG0079|consen 157 VEAMFHCITKQVL 169 (198)
T ss_pred chHHHHHHHHHHH
Confidence 9999999987653
No 212
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2.4e-16 Score=150.31 Aligned_cols=188 Identities=24% Similarity=0.263 Sum_probs=130.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceee--------------ecCCCCceEEeEEEEEeC---CCeeEEEEeCCCCchhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--------------VTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKK 177 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~--------------~~~~~~~t~~~~~~~~~~---~~~~~~l~DtpG~~~~~ 177 (348)
-.+++|+-+...|||||..+|+.....+ +....|.|.-.+..-+.+ ..+.++++||||+++..
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 3379999999999999999987432211 223335555544443333 34889999999988755
Q ss_pred hhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh--hHHHHHHHHHhcC
Q 018949 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKFT 255 (348)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~~ 255 (348)
.. +.+.+..||++++|||++.+.+.+........-+ .+..+|.|+||+|++.++ .+......+-...
T Consensus 140 ~E---------VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe--~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~ 208 (650)
T KOG0462|consen 140 GE---------VSRSLAACDGALLVVDASQGVQAQTVANFYLAFE--AGLAIIPVLNKIDLPSADPERVENQLFELFDIP 208 (650)
T ss_pred ce---------ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH--cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCC
Confidence 33 3344689999999999999998766543333333 788999999999998654 3333333333332
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCchHHHHHHHHHHHHHhhccCCCCceEE
Q 018949 256 DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQ 324 (348)
Q Consensus 256 ~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~~eip~~~~ 324 (348)
. .+++.+||++|.|+++++++|.+.++.. ....+.|.+. ++-+-.+..++..|.+..-
T Consensus 209 ~-~~~i~vSAK~G~~v~~lL~AII~rVPpP------~~~~d~plr~----Lifds~yD~y~G~I~~vrv 266 (650)
T KOG0462|consen 209 P-AEVIYVSAKTGLNVEELLEAIIRRVPPP------KGIRDAPLRM----LIFDSEYDEYRGVIALVRV 266 (650)
T ss_pred c-cceEEEEeccCccHHHHHHHHHhhCCCC------CCCCCcchHH----HhhhhhhhhhcceEEEEEE
Confidence 2 3789999999999999999999999763 2334566665 4555566777777766443
No 213
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.3e-16 Score=126.93 Aligned_cols=155 Identities=19% Similarity=0.209 Sum_probs=108.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+++++|+.|.|||.|+..+...++.- ++.+.+..-......+..+.+++.+|||+| ++.++++ ++.|++.
T Consensus 11 Kfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAG--QErFRSV-------tRsYYRG 81 (214)
T KOG0086|consen 11 KFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAG--QERFRSV-------TRSYYRG 81 (214)
T ss_pred eeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeeccc--HHHHHHH-------HHHHhcc
Confidence 89999999999999999999887652 122222222222222344567899999999 6665544 6678999
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHH-HHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
|-++++|+|+++.. .....|+........+++-+|+++||.|+.+.+++.-. ...+...... -+.++||++|+|++
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel-~flETSa~TGeNVE 160 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENEL-MFLETSALTGENVE 160 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccce-eeeeecccccccHH
Confidence 99999999998654 55556655544333477888999999999877665322 2233333332 57899999999999
Q ss_pred HHHHHHHHh
Q 018949 273 DIRDWILTK 281 (348)
Q Consensus 273 eL~~~i~~~ 281 (348)
+.|-...+.
T Consensus 161 EaFl~c~~t 169 (214)
T KOG0086|consen 161 EAFLKCART 169 (214)
T ss_pred HHHHHHHHH
Confidence 988665443
No 214
>PRK12735 elongation factor Tu; Reviewed
Probab=99.70 E-value=8.9e-16 Score=148.12 Aligned_cols=159 Identities=18% Similarity=0.156 Sum_probs=109.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC-------ceee--------ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ-------KLSI--------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~-------~~~~--------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (348)
...+|+++|++++|||||+++|++. +... .....+.|.......+..++..+.++||||+.
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~---- 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA---- 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH----
Confidence 3458999999999999999999862 1100 11244666666555566677889999999952
Q ss_pred hhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEE-EEEeccCCCChhhHHH----HHHHHHh
Q 018949 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGEIAK----KLEWYEK 253 (348)
Q Consensus 179 ~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl~~~~~~~~----~~~~~~~ 253 (348)
.+...+...+..+|++++|+|+..+...+...+...+.. .++|.+ +|+||+|+.+..+..+ ....+..
T Consensus 87 -----~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 87 -----DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred -----HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 233445566789999999999998776666666666655 678866 5799999985432211 1112222
Q ss_pred cCC----CCeEEEecCCCCC----------CHHHHHHHHHHhCC
Q 018949 254 FTD----VDEVIPVSAKYGH----------GVEDIRDWILTKLP 283 (348)
Q Consensus 254 ~~~----~~~i~~vSA~~g~----------gi~eL~~~i~~~l~ 283 (348)
..+ ..+++++||.+|. ++.+|++.|.+.++
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 221 3589999999984 67788888877664
No 215
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.69 E-value=7e-16 Score=149.33 Aligned_cols=160 Identities=19% Similarity=0.190 Sum_probs=101.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCce--eeecCCCCceEEeEEEE--------------E------eC-C-----CeeEE
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKL--SIVTNKPQTTRHRILGI--------------C------SG-P-----EYQMI 166 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~--~~~~~~~~~t~~~~~~~--------------~------~~-~-----~~~~~ 166 (348)
..+|+++|+.++|||||+.+|.+... .......+.|....... + .. + ...+.
T Consensus 9 ~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (411)
T PRK04000 9 EVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVS 88 (411)
T ss_pred cEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEE
Confidence 34899999999999999999976311 10111223333221100 0 00 0 25799
Q ss_pred EEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH
Q 018949 167 LYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (348)
Q Consensus 167 l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~ 245 (348)
+|||||+. . +...+......+|++++|+|++++. ..........+... ...|+++|+||+|+.+.....
T Consensus 89 liDtPG~~--~-------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~-~i~~iiVVlNK~Dl~~~~~~~ 158 (411)
T PRK04000 89 FVDAPGHE--T-------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII-GIKNIVIVQNKIDLVSKERAL 158 (411)
T ss_pred EEECCCHH--H-------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEEeeccccchhHH
Confidence 99999942 2 2334455567889999999999765 44434444444432 224789999999998654432
Q ss_pred HHHHHHHhc-----CCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 246 KKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 246 ~~~~~~~~~-----~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
.....+... ....+++++||++|.|+++|+++|.+.++.
T Consensus 159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 222222221 123589999999999999999999987754
No 216
>PRK00049 elongation factor Tu; Reviewed
Probab=99.68 E-value=1.8e-15 Score=145.88 Aligned_cols=159 Identities=18% Similarity=0.126 Sum_probs=112.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCcee---------------eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (348)
...+|+++|++++|||||+++|++.... ......+.|.......+..++.++.++||||+.
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~---- 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH----
Confidence 3448999999999999999999863110 011245677776666666677889999999952
Q ss_pred hhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEE-EEEeccCCCChhhHH-HHHHHHHh---
Q 018949 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGEIA-KKLEWYEK--- 253 (348)
Q Consensus 179 ~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl~~~~~~~-~~~~~~~~--- 253 (348)
.+...+...+..+|++++|+|+..+...+...+...+.. .++|.+ +++||+|+.+..+.. .....+..
T Consensus 87 -----~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~ 159 (396)
T PRK00049 87 -----DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred -----HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHH--cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence 233445566789999999999998887777777777766 678976 589999998543321 11112221
Q ss_pred cC----CCCeEEEecCCCCC----------CHHHHHHHHHHhCC
Q 018949 254 FT----DVDEVIPVSAKYGH----------GVEDIRDWILTKLP 283 (348)
Q Consensus 254 ~~----~~~~i~~vSA~~g~----------gi~eL~~~i~~~l~ 283 (348)
.. ...+++++||++|. |+..|++.|.+.++
T Consensus 160 ~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 11 23689999999875 57788888887654
No 217
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.68 E-value=1.5e-15 Score=146.55 Aligned_cols=158 Identities=16% Similarity=0.141 Sum_probs=107.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC------cee---------eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLS---------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~------~~~---------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (348)
+..+|+++|+.++|||||+++|++. ... ......+.|.+.....+..++..+.+|||||+.+
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~--- 87 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD--- 87 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH---
Confidence 4458999999999999999999743 100 0112356777766666666778899999999532
Q ss_pred hhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEE-EEEeccCCCChhhHHH----HHHHHHh
Q 018949 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPGEIAK----KLEWYEK 253 (348)
Q Consensus 179 ~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl~~~~~~~~----~~~~~~~ 253 (348)
+...+...+..+|++++|+|+..+...+...++..+.. .++|.+ +|+||+|+.+..+..+ ....+..
T Consensus 88 ------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~ 159 (394)
T TIGR00485 88 ------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 22334455678999999999998877776666666665 567865 6899999986443221 1222222
Q ss_pred cCC----CCeEEEecCCCCC--------CHHHHHHHHHHhC
Q 018949 254 FTD----VDEVIPVSAKYGH--------GVEDIRDWILTKL 282 (348)
Q Consensus 254 ~~~----~~~i~~vSA~~g~--------gi~eL~~~i~~~l 282 (348)
..+ ..+++++||.+|. ++.+|++.+.+.+
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~ 200 (394)
T TIGR00485 160 EYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYI 200 (394)
T ss_pred hcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcC
Confidence 222 2689999999875 3456666666544
No 218
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.68 E-value=7.7e-16 Score=150.14 Aligned_cols=150 Identities=20% Similarity=0.193 Sum_probs=99.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceee------------------------------ecCCCCceEEeEEEEEeCCCee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI------------------------------VTNKPQTTRHRILGICSGPEYQ 164 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~~ 164 (348)
..+|+++|++++|||||+++|+...... .....+.|.+.....+..++..
T Consensus 7 ~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~~ 86 (426)
T TIGR00483 7 HINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKYE 86 (426)
T ss_pred eeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCeE
Confidence 3489999999999999999998422110 0123366777777777888899
Q ss_pred EEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCC---CchHHHHHHHhcccccCCCCEEEEEeccCCCC-
Q 018949 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA---PERIDEILEEGVGDHKDKLPILLVLNKKDLIK- 240 (348)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~---~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~- 240 (348)
+.+|||||+ .. +...+...+..+|++++|+|++++ ...+........+.. ...|+|+|+||+|+.+
T Consensus 87 i~iiDtpGh--~~-------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~ 156 (426)
T TIGR00483 87 VTIVDCPGH--RD-------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVNY 156 (426)
T ss_pred EEEEECCCH--HH-------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccCc
Confidence 999999994 22 223444556899999999999887 333333322333332 2357999999999974
Q ss_pred -hhhHHH---HHHHHHhcCC----CCeEEEecCCCCCCHHHH
Q 018949 241 -PGEIAK---KLEWYEKFTD----VDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 241 -~~~~~~---~~~~~~~~~~----~~~i~~vSA~~g~gi~eL 274 (348)
...... ....+....+ ..+++++||++|.|+.++
T Consensus 157 ~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~ 198 (426)
T TIGR00483 157 DEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK 198 (426)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence 222221 2222222222 358999999999999863
No 219
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=3.7e-16 Score=130.55 Aligned_cols=160 Identities=20% Similarity=0.241 Sum_probs=117.7
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+.+..+|+++|--|+||||+++++...+.....+ |.......+.+++..+.+||..| +...+.+ +..
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvP----TiGfnVE~v~ykn~~f~vWDvGG--q~k~R~l-------W~~ 80 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVP----TIGFNVETVEYKNISFTVWDVGG--QEKLRPL-------WKH 80 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccCCC----ccccceeEEEEcceEEEEEecCC--Ccccccc-------hhh
Confidence 4456689999999999999999998777653333 33334445566689999999999 5444433 556
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhccccc-CCCCEEEEEeccCCCChh---hHHHHHHHHHhcCCCCeEEEecC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPG---EIAKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~i~~vSA 265 (348)
|+...+++|||+|+++.. .+..+.+...+.... .+.|+++.+||.|++..- ++.+.+....-....+.+..|+|
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a 160 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCA 160 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccc
Confidence 689999999999998754 444455555554422 579999999999998643 44444444333445567899999
Q ss_pred CCCCCHHHHHHHHHHhCCC
Q 018949 266 KYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~ 284 (348)
.+|+|+.+-++++.+.+..
T Consensus 161 ~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 161 ISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred cccccHHHHHHHHHHHHhc
Confidence 9999999999999987753
No 220
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.68 E-value=1.7e-15 Score=134.38 Aligned_cols=112 Identities=24% Similarity=0.310 Sum_probs=77.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCC---------------ceEEe--EEEEEe--------CCCeeEEEEeCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ---------------TTRHR--ILGICS--------GPEYQMILYDTP 171 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~---------------~t~~~--~~~~~~--------~~~~~~~l~Dtp 171 (348)
+|+++|+.++|||||+++|+...........+ .|... ....+. ..+..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 69999999999999999997543211111111 11111 111222 226789999999
Q ss_pred CCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 172 G~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
|+.+ +...+..++..+|++++|+|+..+.......+...... .++|+++|+||+|+.
T Consensus 82 G~~~---------f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVD---------FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred Cccc---------cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCcc
Confidence 9643 22345566789999999999998887666666665554 578999999999986
No 221
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.67 E-value=4.4e-17 Score=131.78 Aligned_cols=154 Identities=19% Similarity=0.256 Sum_probs=112.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEE--eE--EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH--RI--LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~--~~--~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
.+|+++|..=||||||+-+++..++.- ..-+|.. .. ...+......+.+|||+| ++.++.+...+
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~EnkFn~---kHlsTlQASF~~kk~n~ed~ra~L~IWDTAG--QErfHALGPIY------ 82 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENKFNC---KHLSTLQASFQNKKVNVEDCRADLHIWDTAG--QERFHALGPIY------ 82 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhhcch---hhHHHHHHHHhhcccccccceeeeeeeeccc--hHhhhccCceE------
Confidence 489999999999999999999877642 1111111 11 111223345799999999 88888776644
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH-HHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-KLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++.++++++|+|.++.. +....|+.++...++..+.++||+||+|+...+.+.. ....+....+. .++.+||+.+
T Consensus 83 -YRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA-~y~eTSAk~N 160 (218)
T KOG0088|consen 83 -YRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGA-LYMETSAKDN 160 (218)
T ss_pred -EeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhch-hheecccccc
Confidence 89999999999998654 6667788877777777889999999999986554322 22334444443 6899999999
Q ss_pred CCHHHHHHHHHHhC
Q 018949 269 HGVEDIRDWILTKL 282 (348)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (348)
.||.+||..+...+
T Consensus 161 ~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 161 VGISELFESLTAKM 174 (218)
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999887654
No 222
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=7.7e-16 Score=123.18 Aligned_cols=156 Identities=14% Similarity=0.212 Sum_probs=107.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEE-eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGIC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
++.|+|...+|||||+-+..+..+.+.- .+-|.. .....++ ..+...+++|||+| ++.++.+ +-.+++
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~afvsTvGid-FKvKTvyr~~kRiklQiwDTag--qEryrti-------TTayyR 92 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID-FKVKTVYRSDKRIKLQIWDTAG--QERYRTI-------TTAYYR 92 (193)
T ss_pred eEEEEccCCccchhhhHHhhccccccceeeeeeee-EEEeEeeecccEEEEEEEeccc--chhhhHH-------HHHHhh
Confidence 8999999999999999999998765310 011111 1111222 23457899999999 5554433 445689
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
.++++|+++|.++.. .....|... ++.. -.+.|+|+|+||||+.+.+.+ .+....+...+++ .+|++||+.+.|
T Consensus 93 gamgfiLmyDitNeeSf~svqdw~tq-Iktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGf-efFEtSaK~Nin 170 (193)
T KOG0093|consen 93 GAMGFILMYDITNEESFNSVQDWITQ-IKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGF-EFFETSAKENIN 170 (193)
T ss_pred ccceEEEEEecCCHHHHHHHHHHHHH-heeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhCh-HHhhhccccccc
Confidence 999999999998754 333333332 2221 268999999999999875533 2233445555666 789999999999
Q ss_pred HHHHHHHHHHhCCC
Q 018949 271 VEDIRDWILTKLPL 284 (348)
Q Consensus 271 i~eL~~~i~~~l~~ 284 (348)
++.+|+.++..+-.
T Consensus 171 Vk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 171 VKQVFERLVDIICD 184 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876643
No 223
>PRK12739 elongation factor G; Reviewed
Probab=99.67 E-value=1.2e-15 Score=156.92 Aligned_cols=116 Identities=20% Similarity=0.229 Sum_probs=89.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCce-----eeec------------CCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKL-----SIVT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~-----~~~~------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+..+|+|+|++|+|||||+++|+.... ..+. ...++|.......+.+++..++++||||+.+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~- 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD- 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH-
Confidence 344899999999999999999975311 1111 2445666666666777889999999999643
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
+...+..++..+|++|+|+|+..+.+.+++.++..+.. .++|+|+++||+|+..
T Consensus 86 --------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~--~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 --------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADK--YGVPRIVFVNKMDRIG 139 (691)
T ss_pred --------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 22346677889999999999999888877777777766 6799999999999875
No 224
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.67 E-value=5.4e-16 Score=152.44 Aligned_cols=151 Identities=21% Similarity=0.167 Sum_probs=99.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecC----------CC----------------------CceEEeEEEEEeCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN----------KP----------------------QTTRHRILGICSGP 161 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~----------~~----------------------~~t~~~~~~~~~~~ 161 (348)
...+|+++|++++|||||+++|+.....+... .. +.|.+.....+..+
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 34589999999999999999998654322110 01 23445444556677
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
+.++.++||||+. . +...+...+..+|++++|+|+..+...+......++... ...|+|+|+||+|+.+.
T Consensus 106 ~~~i~~iDTPGh~--~-------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-g~~~iIvvvNKiD~~~~ 175 (474)
T PRK05124 106 KRKFIIADTPGHE--Q-------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-GIKHLVVAVNKMDLVDY 175 (474)
T ss_pred CcEEEEEECCCcH--H-------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-CCCceEEEEEeeccccc
Confidence 8899999999952 2 222333446899999999999988755444444444432 22478999999999742
Q ss_pred h--hHHHHHHHHHh---c---CCCCeEEEecCCCCCCHHHH
Q 018949 242 G--EIAKKLEWYEK---F---TDVDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 242 ~--~~~~~~~~~~~---~---~~~~~i~~vSA~~g~gi~eL 274 (348)
. .+......+.. . ....+++++||++|.|++++
T Consensus 176 ~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 176 SEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2 22333333321 1 12468999999999999865
No 225
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=4.9e-16 Score=152.11 Aligned_cols=161 Identities=20% Similarity=0.232 Sum_probs=116.9
Q ss_pred CCCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE------------------eCCCeeEEEEeCC
Q 018949 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC------------------SGPEYQMILYDTP 171 (348)
Q Consensus 110 ~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~------------------~~~~~~~~l~Dtp 171 (348)
..+.|++.+||+|+..+|||-|+..+.+.++.- ....+.|...--..+ ...-..+.++|||
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqe-geaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtp 548 (1064)
T KOG1144|consen 470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQE-GEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTP 548 (1064)
T ss_pred chhcCCceEEEeecccccchHHHHHhhcccccc-ccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCC
Confidence 446799999999999999999999999877642 333333333211111 1222358999999
Q ss_pred CCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh------hhH-
Q 018949 172 GIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP------GEI- 244 (348)
Q Consensus 172 G~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~------~~~- 244 (348)
| ++.|..++..+ ...||++|+|+|.+++.+.+.....++++. .+.|+||++||+|..-. ..+
T Consensus 549 g--hEsFtnlRsrg-------sslC~~aIlvvdImhGlepqtiESi~lLR~--rktpFivALNKiDRLYgwk~~p~~~i~ 617 (1064)
T KOG1144|consen 549 G--HESFTNLRSRG-------SSLCDLAILVVDIMHGLEPQTIESINLLRM--RKTPFIVALNKIDRLYGWKSCPNAPIV 617 (1064)
T ss_pred C--chhhhhhhhcc-------ccccceEEEEeehhccCCcchhHHHHHHHh--cCCCeEEeehhhhhhcccccCCCchHH
Confidence 9 66777776655 679999999999999998888888888888 89999999999997521 111
Q ss_pred -----------HH-------HHHHHHh-------------cCCCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 245 -----------AK-------KLEWYEK-------------FTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 245 -----------~~-------~~~~~~~-------------~~~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
.+ +...+.. ......++|+||.+|+||.+|+-+|+++.
T Consensus 618 ~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144|consen 618 EALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence 11 1111111 11234789999999999999999998754
No 226
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.66 E-value=2.4e-15 Score=149.25 Aligned_cols=116 Identities=22% Similarity=0.228 Sum_probs=82.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCcee-----ee----------cC------CCCceEEeEEEEEeCCCeeEEEEeCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-----IV----------TN------KPQTTRHRILGICSGPEYQMILYDTPG 172 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~-----~~----------~~------~~~~t~~~~~~~~~~~~~~~~l~DtpG 172 (348)
+..+|+|+|++|+|||||+++|+..... .+ ++ ..+.|.......+.+++..+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 3448999999999999999999732111 01 00 001222333344667789999999999
Q ss_pred CchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
+.+. ...+..++..+|++|+|+|++.+.......+....+. .++|+++++||+|+..
T Consensus 89 ~~df---------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 89 HEDF---------SEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRL--RDTPIFTFINKLDRDG 145 (526)
T ss_pred chhh---------HHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHh--cCCCEEEEEECCcccc
Confidence 6432 1234455789999999999998887776777776666 7899999999999864
No 227
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.66 E-value=1.6e-15 Score=132.61 Aligned_cols=160 Identities=19% Similarity=0.130 Sum_probs=100.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceee-ecCCCC---ceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQ---TTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~---~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
.+|+++|.+|+|||||+|+|+|..... .....+ +|..... +.......+.+|||||+.... ..... +.+. .
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~l~l~DtpG~~~~~-~~~~~-~l~~--~ 76 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP-YPHPKFPNVTLWDLPGIGSTA-FPPDD-YLEE--M 76 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee-eecCCCCCceEEeCCCCCccc-CCHHH-HHHH--h
Confidence 479999999999999999999854321 111111 2221111 111123468999999975422 11222 2121 2
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh---------HHH----HHHHHHh---c-
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---------IAK----KLEWYEK---F- 254 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~---------~~~----~~~~~~~---~- 254 (348)
.+..+|++++|.+. +....+..+...++. .+.|+++|+||+|+....+ ..+ ....+.. .
T Consensus 77 ~~~~~d~~l~v~~~--~~~~~d~~~~~~l~~--~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 77 KFSEYDFFIIISST--RFSSNDVKLAKAIQC--MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CccCcCEEEEEeCC--CCCHHHHHHHHHHHH--hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 25788999988543 456666667777766 5789999999999953211 111 1122221 1
Q ss_pred -CCCCeEEEecCC--CCCCHHHHHHHHHHhCCC
Q 018949 255 -TDVDEVIPVSAK--YGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 255 -~~~~~i~~vSA~--~g~gi~eL~~~i~~~l~~ 284 (348)
....+++.+|+. .+.|+..|.+.|...++.
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 234579999999 679999999999988864
No 228
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.66 E-value=6.4e-16 Score=158.94 Aligned_cols=143 Identities=15% Similarity=0.155 Sum_probs=102.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-----ecC------------CCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----VTN------------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-----~~~------------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+-.+|+|+|++|+|||||+|+|++....+ +.+ ..++|.......+.+++..+++|||||+.+.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 33489999999999999999997432211 111 2456666666677788899999999997542
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCC
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (348)
. ..+..++..+|++++|+|++.+.......++..+.. .++|+++|+||+|+.... .......+....+
T Consensus 89 ~---------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~p~ivviNK~D~~~~~-~~~~~~~i~~~l~ 156 (689)
T TIGR00484 89 T---------VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANR--YEVPRIAFVNKMDKTGAN-FLRVVNQIKQRLG 156 (689)
T ss_pred h---------HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHH--cCCCEEEEEECCCCCCCC-HHHHHHHHHHHhC
Confidence 1 234456789999999999998887766666666665 679999999999998644 3334444444433
Q ss_pred CC---eEEEecCCCC
Q 018949 257 VD---EVIPVSAKYG 268 (348)
Q Consensus 257 ~~---~i~~vSA~~g 268 (348)
.. .++++|+..+
T Consensus 157 ~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 157 ANAVPIQLPIGAEDN 171 (689)
T ss_pred CCceeEEeccccCCC
Confidence 32 3688998766
No 229
>PLN03126 Elongation factor Tu; Provisional
Probab=99.66 E-value=4.3e-15 Score=145.65 Aligned_cols=147 Identities=18% Similarity=0.182 Sum_probs=102.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee---------------ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (348)
...+|+++|++++|||||+++|++....+ .....+.|.+.....+..++..+.++||||+.+
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~--- 156 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD--- 156 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH---
Confidence 34589999999999999999998532211 122235555555555667788999999999532
Q ss_pred hhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhhHHH-H----HHHHH
Q 018949 179 HMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAK-K----LEWYE 252 (348)
Q Consensus 179 ~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~-~----~~~~~ 252 (348)
+...+...+..+|++++|+|+..+...+...++..+.. .++| +|+++||+|+.+..+..+ . ...+.
T Consensus 157 ------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~ 228 (478)
T PLN03126 157 ------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ--VGVPNMVVFLNKQDQVDDEELLELVELEVRELLS 228 (478)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHH
Confidence 23344555679999999999999887777777777666 6788 778999999986443222 1 12222
Q ss_pred hc---CCCCeEEEecCCCCCCH
Q 018949 253 KF---TDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 253 ~~---~~~~~i~~vSA~~g~gi 271 (348)
.. ....+++++||.+|.++
T Consensus 229 ~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 229 SYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred hcCCCcCcceEEEEEccccccc
Confidence 21 12458999999988543
No 230
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.66 E-value=1.4e-15 Score=147.19 Aligned_cols=147 Identities=24% Similarity=0.203 Sum_probs=98.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec--------------------------------CCCCceEEeEEEEEeCCCee
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT--------------------------------NKPQTTRHRILGICSGPEYQ 164 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~--------------------------------~~~~~t~~~~~~~~~~~~~~ 164 (348)
+|+++|++++|||||+++|+.....+.. ...+.|.+.....+..++..
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 7999999999999999999744322110 11234455555566677889
Q ss_pred EEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh--
Q 018949 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG-- 242 (348)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~-- 242 (348)
+.++||||+.+ +...+...+..+|++++|+|+..+...+.......+... ...++++|+||+|+.+..
T Consensus 82 ~~liDtPGh~~---------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~~~iivviNK~D~~~~~~~ 151 (406)
T TIGR02034 82 FIVADTPGHEQ---------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GIRHVVLAVNKMDLVDYDEE 151 (406)
T ss_pred EEEEeCCCHHH---------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CCCcEEEEEEecccccchHH
Confidence 99999999532 222333457899999999999988866665555555442 224688999999997532
Q ss_pred hHHHHHHHHH---hcCC--CCeEEEecCCCCCCHHH
Q 018949 243 EIAKKLEWYE---KFTD--VDEVIPVSAKYGHGVED 273 (348)
Q Consensus 243 ~~~~~~~~~~---~~~~--~~~i~~vSA~~g~gi~e 273 (348)
........+. ...+ ..+++++||++|.|+++
T Consensus 152 ~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 152 VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 1222222222 2222 24799999999999986
No 231
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.65 E-value=2.8e-15 Score=139.93 Aligned_cols=185 Identities=22% Similarity=0.294 Sum_probs=119.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCceE-------------------E-eEEE-----------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTR-------------------H-RILG----------- 156 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t~-------------------~-~~~~----------- 156 (348)
+...|+|.|.||+|||||++++. |.++..++..|.... . .+..
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a 134 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVA 134 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchH
Confidence 44589999999999999999864 233333333222210 0 1111
Q ss_pred --------EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC
Q 018949 157 --------ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (348)
Q Consensus 157 --------~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p 228 (348)
.+...++.+.++||+|..+.... ....+|++++|++...+..-+. +..-. ....
T Consensus 135 ~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~------------i~~~aD~vlvv~~p~~gd~iq~--~k~gi----~E~a 196 (332)
T PRK09435 135 RKTRETMLLCEAAGYDVILVETVGVGQSETA------------VAGMVDFFLLLQLPGAGDELQG--IKKGI----MELA 196 (332)
T ss_pred HHHHHHHHHHhccCCCEEEEECCCCccchhH------------HHHhCCEEEEEecCCchHHHHH--HHhhh----hhhh
Confidence 01233578999999998753211 1457999999987433321111 11101 1233
Q ss_pred EEEEEeccCCCChhhHHHHHHHHHhcC---------CCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCcccCC---
Q 018949 229 ILLVLNKKDLIKPGEIAKKLEWYEKFT---------DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSE--- 296 (348)
Q Consensus 229 ~ivv~NK~Dl~~~~~~~~~~~~~~~~~---------~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~--- 296 (348)
-++|+||+|+............+.... ...|++++||++|.|+++|++.|.+.++ +.++.+..++
T Consensus 197 DIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~---~l~~sg~l~~~r~ 273 (332)
T PRK09435 197 DLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA---ALTASGEFAARRR 273 (332)
T ss_pred heEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HhccCChHHHHHH
Confidence 489999999986543333333333221 1158999999999999999999999876 5667777766
Q ss_pred CchHHHHHHHHHHHHHhhccCCC
Q 018949 297 HPERFFVGEIIREKIFMQYRNEV 319 (348)
Q Consensus 297 ~~~~~~~~e~ire~~~~~~~~ei 319 (348)
.+.++++.+++++++++.++...
T Consensus 274 ~~~~~~v~elire~l~~~~~~~~ 296 (332)
T PRK09435 274 EQQVDWMWEMVEEGLLDRLFADP 296 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCc
Confidence 78888999999999998776543
No 232
>PRK00007 elongation factor G; Reviewed
Probab=99.65 E-value=2.9e-15 Score=153.96 Aligned_cols=116 Identities=19% Similarity=0.196 Sum_probs=90.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCce---e--eec------------CCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKL---S--IVT------------NKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~---~--~~~------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+..+|+|+|++|+|||||+++|+.... . .+. ...++|.+.....+.+.+..++++||||+.+.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 334899999999999999999973211 1 111 24567777766677778899999999996432
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
...+...+..+|++|+|+|+..+.+.++..++..+.. .++|+|+++||+|+..
T Consensus 89 ---------~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~--~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 89 ---------TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADK--YKVPRIAFVNKMDRTG 141 (693)
T ss_pred ---------HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 2235566789999999999999988888888887777 7799999999999874
No 233
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.65 E-value=2.2e-15 Score=133.41 Aligned_cols=156 Identities=26% Similarity=0.346 Sum_probs=95.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee------------cC------CCCceEEeEEEEE-----eCCCeeEEEEeCCCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV------------TN------KPQTTRHRILGIC-----SGPEYQMILYDTPGI 173 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~------------~~------~~~~t~~~~~~~~-----~~~~~~~~l~DtpG~ 173 (348)
+|+++|++|+|||||+++|++...... .+ ..+.|.......+ ......+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 699999999999999999986543211 00 0111211111111 133578999999996
Q ss_pred chhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC------h-h---h
Q 018949 174 IEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK------P-G---E 243 (348)
Q Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~------~-~---~ 243 (348)
.+ + ...+..++..+|++++|+|++++.......+...... .+.|+++|+||+|+.. . . .
T Consensus 82 ~~--f-------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~D~~~~~~~l~~~~~~~~ 150 (213)
T cd04167 82 VN--F-------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL--EGLPIVLVINKIDRLILELKLPPNDAYFK 150 (213)
T ss_pred cc--h-------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCcccccCCHHHHHHH
Confidence 43 2 1234455789999999999988775555444444443 4699999999999851 1 1 1
Q ss_pred HHHHHHHHHh---cCC------CC----eEEEecCCCCCCHH--------HHHHHHHHhCC
Q 018949 244 IAKKLEWYEK---FTD------VD----EVIPVSAKYGHGVE--------DIRDWILTKLP 283 (348)
Q Consensus 244 ~~~~~~~~~~---~~~------~~----~i~~vSA~~g~gi~--------eL~~~i~~~l~ 283 (348)
+.+..+.+.. ... +. .+++.||+.+.++. +|++.|.+.++
T Consensus 151 l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~ 211 (213)
T cd04167 151 LRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIP 211 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCC
Confidence 1112222211 111 12 37888999987765 67776666554
No 234
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.65 E-value=2.9e-16 Score=149.03 Aligned_cols=153 Identities=20% Similarity=0.183 Sum_probs=91.2
Q ss_pred ccccchhhh--HHhhcCceEEEechhhhhHhhhhhhhhhhhhhHHhhhhhhh-hccccCCCCccCCcCC--ccccccccC
Q 018949 14 LFPHYSTLT--AYREIKFGFQGRSSSITCRSNEHQSLVLSEKEVQQQKLWSN-QREMDLDDGDEMEFDD--ASSFLSLSE 88 (348)
Q Consensus 14 ~~~~~~~~~--~f~~~~i~~~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~d~~e~~~~~~--~~~~~~~~~ 88 (348)
|.||..-.| ||+++||.+.||||.++.+..+.....++-..-++...... ....+.|. +..... ..++..+..
T Consensus 218 l~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~--~i~r~~~d~~e~~~v~~ 295 (562)
T KOG1424|consen 218 LPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDL--KIARDKGDGEEIEDVEQ 295 (562)
T ss_pred CCHHHHHHHHHHHHhcCceEEEEecccccccccccchhhhhhcccchhhhccccccccchh--hhhhhcccccchhhHHh
Confidence 567777777 99999999999999997776665332221111111111111 11111110 000000 001100000
Q ss_pred CCCCCCCCCChhhhhhccccCCCCCCc-cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEE
Q 018949 89 KPDRNMASPDDYEIEEFDYASHPNHKS-GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMIL 167 (348)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l 167 (348)
....... ... -..+.++. ..||+||+|||||||+||+|.|.+...|+.+||.|++.++..+... +.|
T Consensus 296 -----~~~~s~~--~~~--~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~---v~L 363 (562)
T KOG1424|consen 296 -----LRLISAM--EPT--PTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPS---VCL 363 (562)
T ss_pred -----hhhhhcc--ccC--CCCcCCCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCC---cee
Confidence 0000000 000 01222233 5899999999999999999999999999999999999999888754 899
Q ss_pred EeCCCCchhhhhh
Q 018949 168 YDTPGIIEKKIHM 180 (348)
Q Consensus 168 ~DtpG~~~~~~~~ 180 (348)
|||||++...+..
T Consensus 364 CDCPGLVfPSf~~ 376 (562)
T KOG1424|consen 364 CDCPGLVFPSFSP 376 (562)
T ss_pred cCCCCccccCCCc
Confidence 9999998766554
No 235
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.64 E-value=2.3e-15 Score=131.11 Aligned_cols=158 Identities=22% Similarity=0.230 Sum_probs=108.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCce--EEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT--RHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|.+|||||+|+.++++..+... +.+|. .+.....++.+...+.++||+| +..+..+.. .+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~--y~ptied~y~k~~~v~~~~~~l~ilDt~g--~~~~~~~~~-------~~ 71 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVED--YDPTIEDSYRKELTVDGEVCMLEILDTAG--QEEFSAMRD-------LY 71 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccc--cCCCccccceEEEEECCEEEEEEEEcCCC--cccChHHHH-------Hh
Confidence 44899999999999999999999888633 33333 3334444556667899999999 444444433 33
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhccccc-CCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
+..+|+.++|++.++.. +.....+..+.+... ..+|+++|+||+|+.....+. +....+..... ++++++||+.+
T Consensus 72 ~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~-~~f~E~Sak~~ 150 (196)
T KOG0395|consen 72 IRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWG-CAFIETSAKLN 150 (196)
T ss_pred hccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcC-CcEEEeeccCC
Confidence 67889999999987654 333333333322221 558999999999998643332 22233333344 46999999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 018949 269 HGVEDIRDWILTKLPL 284 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (348)
.+++++|..+.+.+..
T Consensus 151 ~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 151 YNVDEVFYELVREIRL 166 (196)
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999886643
No 236
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.64 E-value=5.8e-15 Score=129.74 Aligned_cols=114 Identities=26% Similarity=0.355 Sum_probs=73.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
+|+++|++|+|||||+++|.+.++.. ..+.++......... ..+..+.+|||||+. .. ...+..++.
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~--t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~--~~-------~~~~~~~~~ 70 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRS--TVTSIEPNVATFILNSEGKGKKFRLVDVPGHP--KL-------RDKLLETLK 70 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC--ccCcEeecceEEEeecCCCCceEEEEECCCCH--HH-------HHHHHHHHh
Confidence 69999999999999999999876532 122222221111121 245779999999953 22 122344567
Q ss_pred Cc-cEEEEEecCCCCC---chHHHHHHHhccc---ccCCCCEEEEEeccCCCCh
Q 018949 195 NA-DCIVVLVDACKAP---ERIDEILEEGVGD---HKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 195 ~a-d~iv~VvD~~~~~---~~~~~~~~~~~~~---~~~~~p~ivv~NK~Dl~~~ 241 (348)
.+ +++|||+|++... .....++...+.. ...+.|+++|+||+|+...
T Consensus 71 ~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 71 NSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred ccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 77 9999999998753 2222333333221 1257999999999998754
No 237
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.64 E-value=4.4e-16 Score=147.14 Aligned_cols=166 Identities=21% Similarity=0.237 Sum_probs=121.5
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+....+++++|.||||||||+|.+...+.. +.+++.||+....+.+++.-..++++||||+.+.+........+...-.
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradve-vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDE-VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccc-cCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 445568999999999999999999988876 6899999999999999988889999999999886555444443333222
Q ss_pred hccCccEEEEEecCCCCC----chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH----HHHHHHHhcCCCCeEEEe
Q 018949 192 AGINADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA----KKLEWYEKFTDVDEVIPV 263 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~----~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~----~~~~~~~~~~~~~~i~~v 263 (348)
..+---+|+|++|.+... ..+. .+...++.+..++|+|+|+||+|++.+.++. +.+..+..... .+++.+
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~Qv-kLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~-v~v~~t 321 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQV-KLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGN-VKVVQT 321 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHHH-HHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccC-ceEEEe
Confidence 233445789999998644 2222 2333444445789999999999998765543 33344444333 489999
Q ss_pred cCCCCCCHHHHHHHHHH
Q 018949 264 SAKYGHGVEDIRDWILT 280 (348)
Q Consensus 264 SA~~g~gi~eL~~~i~~ 280 (348)
|+.+.+|+-++.....+
T Consensus 322 S~~~eegVm~Vrt~ACe 338 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACE 338 (620)
T ss_pred cccchhceeeHHHHHHH
Confidence 99999999886655443
No 238
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.64 E-value=1.5e-15 Score=123.64 Aligned_cols=157 Identities=21% Similarity=0.300 Sum_probs=111.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE---EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL---GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
..++.++|.+-||||||+..+...+++..+ .|....+... ..-.+...++.+|||+| ++.++++ +.+
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaels-dptvgvdffarlie~~pg~riklqlwdtag--qerfrsi-------tks 77 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELS-DPTVGVDFFARLIELRPGYRIKLQLWDTAG--QERFRSI-------TKS 77 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccC-CCccchHHHHHHHhcCCCcEEEEEEeeccc--hHHHHHH-------HHH
Confidence 347999999999999999999998887544 2222222211 11233456799999999 7666554 667
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhccccc-CCCC-EEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLP-ILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~-~~~p-~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~ 266 (348)
|++++-++++|+|.++.. +....|+.+...... +.++ +.+|+.|+|+...+++. +..+.+....+. .++++||+
T Consensus 78 yyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM-~FVETSak 156 (213)
T KOG0091|consen 78 YYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGM-AFVETSAK 156 (213)
T ss_pred HhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCc-eEEEeccc
Confidence 789999999999998754 555566665544432 4455 46799999998766543 233444444454 78999999
Q ss_pred CCCCHHHHHHHHHHhC
Q 018949 267 YGHGVEDIRDWILTKL 282 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l 282 (348)
+|.|+++-|..|.+.+
T Consensus 157 ~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 157 NGCNVEEAFDMLAQEI 172 (213)
T ss_pred CCCcHHHHHHHHHHHH
Confidence 9999999999887654
No 239
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.63 E-value=6.6e-15 Score=143.70 Aligned_cols=148 Identities=18% Similarity=0.171 Sum_probs=100.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCcee------------------------ee------cCCCCceEEeEEEEEeCCCee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLS------------------------IV------TNKPQTTRHRILGICSGPEYQ 164 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~------------------------~~------~~~~~~t~~~~~~~~~~~~~~ 164 (348)
..+|+++|+.++|||||+.+|+..... .+ ....+.|.+.....+..++..
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~ 86 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYY 86 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeE
Confidence 347999999999999999998742110 00 112245555555556778889
Q ss_pred EEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-------chHHHHHHHhcccccCCCC-EEEEEecc
Q 018949 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLP-ILLVLNKK 236 (348)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-------~~~~~~~~~~~~~~~~~~p-~ivv~NK~ 236 (348)
++++||||+.+ +...+...+..+|++++|+|+..+. ..+....+.++.. .++| +|+++||+
T Consensus 87 i~lIDtPGh~~---------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~--~gi~~iiv~vNKm 155 (446)
T PTZ00141 87 FTIIDAPGHRD---------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT--LGVKQMIVCINKM 155 (446)
T ss_pred EEEEECCChHH---------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH--cCCCeEEEEEEcc
Confidence 99999999532 3344556678999999999998875 2455666666666 6776 67899999
Q ss_pred CCCC----hhhHHHHHHHHHh---cCC----CCeEEEecCCCCCCHHH
Q 018949 237 DLIK----PGEIAKKLEWYEK---FTD----VDEVIPVSAKYGHGVED 273 (348)
Q Consensus 237 Dl~~----~~~~~~~~~~~~~---~~~----~~~i~~vSA~~g~gi~e 273 (348)
|... .....+....+.. ..+ ..+++++||.+|+|+.+
T Consensus 156 D~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 156 DDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 9532 2233333333332 112 36899999999999864
No 240
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.63 E-value=4.7e-15 Score=151.28 Aligned_cols=150 Identities=23% Similarity=0.216 Sum_probs=99.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeec----------CCCC----------------------ceEEeEEEEEeCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT----------NKPQ----------------------TTRHRILGICSGP 161 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~----------~~~~----------------------~t~~~~~~~~~~~ 161 (348)
...+|+++|++|+|||||+++|+.....+.. ...+ .|.+.....+..+
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 3348999999999999999999865433221 1223 3444444456667
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC-
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK- 240 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~- 240 (348)
+.++.++||||+.+ +...+...+..+|++++|+|+..+...+......++... ...|+|+|+||+|+.+
T Consensus 103 ~~~~~liDtPG~~~---------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~~~iivvvNK~D~~~~ 172 (632)
T PRK05506 103 KRKFIVADTPGHEQ---------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GIRHVVLAVNKMDLVDY 172 (632)
T ss_pred CceEEEEECCChHH---------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CCCeEEEEEEecccccc
Confidence 78899999999532 122233456899999999999887755544444444442 2357889999999974
Q ss_pred -hhhHHHHHHHHH---hcCCC--CeEEEecCCCCCCHHH
Q 018949 241 -PGEIAKKLEWYE---KFTDV--DEVIPVSAKYGHGVED 273 (348)
Q Consensus 241 -~~~~~~~~~~~~---~~~~~--~~i~~vSA~~g~gi~e 273 (348)
..........+. ...++ .+++++||++|.|+.+
T Consensus 173 ~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 173 DQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 222232323332 22222 4699999999999984
No 241
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=1.8e-14 Score=120.30 Aligned_cols=159 Identities=23% Similarity=0.265 Sum_probs=114.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeee-------cCCC--CceEEeEEEEEeC-CCeeEEEEeCCCCchhhhhhhH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIV-------TNKP--QTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLD 182 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~-------~~~~--~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~l~ 182 (348)
.+..+|++.|+.++||||++.++.......+ +... .||.-.-.+.+.. ++..+.|+|||| |.++.-+.
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPG--q~RF~fm~ 85 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPG--QERFKFMW 85 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCC--cHHHHHHH
Confidence 3556999999999999999999988764221 1111 1333333333333 347899999999 55554433
Q ss_pred HHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEE
Q 018949 183 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIP 262 (348)
Q Consensus 183 ~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~ 262 (348)
. -+.+.+..+|+++|++.+.......+...+... ..+|++|++||.|+.+....+...+.+....-..|+++
T Consensus 86 ~-------~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~-~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~ 157 (187)
T COG2229 86 E-------ILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSR-NPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIE 157 (187)
T ss_pred H-------HHhCCcceEEEEEecCCCcchHHHHHHHHHhhc-cCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceee
Confidence 2 336789999999999988876556666666652 23999999999999987666666566655543458999
Q ss_pred ecCCCCCCHHHHHHHHHHh
Q 018949 263 VSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 263 vSA~~g~gi~eL~~~i~~~ 281 (348)
++|..++|+.+.++.+...
T Consensus 158 ~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 158 IDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eecccchhHHHHHHHHHhh
Confidence 9999999999998888765
No 242
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.62 E-value=9.4e-15 Score=142.33 Aligned_cols=160 Identities=21% Similarity=0.286 Sum_probs=104.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceee--ecCCCCceEEeEEEE-----------------EeC---------------
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGI-----------------CSG--------------- 160 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~--~~~~~~~t~~~~~~~-----------------~~~--------------- 160 (348)
..+|+++|+.++|||||+.+|.+..... .....+.|...-... ...
T Consensus 34 ~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (460)
T PTZ00327 34 TINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKM 113 (460)
T ss_pred cEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccc
Confidence 3489999999999999999999743210 011111111100000 000
Q ss_pred -CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCC-CchHHHHHHHhcccccCCCCEEEEEeccCC
Q 018949 161 -PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 161 -~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
-...+.++||||+. .+...+...+..+|++++|+|+..+ ...+....+..+... .-.|+|+|+||+|+
T Consensus 114 ~~~~~i~~IDtPGH~---------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~l-gi~~iIVvlNKiDl 183 (460)
T PTZ00327 114 TLKRHVSFVDCPGHD---------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIM-KLKHIIILQNKIDL 183 (460)
T ss_pred cccceEeeeeCCCHH---------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHc-CCCcEEEEEecccc
Confidence 02368999999942 2344555667899999999999875 455444444444432 22468999999999
Q ss_pred CChhhHHHHHHHHHhc-----CCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 239 IKPGEIAKKLEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 239 ~~~~~~~~~~~~~~~~-----~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
.+.....+....+... ....+++++||++|.|++.|++.|.+.++.
T Consensus 184 v~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 184 VKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 8755544444444332 234689999999999999999999987754
No 243
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.61 E-value=2.4e-14 Score=125.46 Aligned_cols=140 Identities=17% Similarity=0.213 Sum_probs=87.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCce---EEeEEEEEe-----CCCeeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTT---RHRILGICS-----GPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t---~~~~~~~~~-----~~~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
+|+++|.++||||||++++.+..+.. ....|. .......+. ...+.+.+|||+| +..+..+.
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~--~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG--~e~~~~l~------ 71 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLG--RPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGG--SESVKSTR------ 71 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC--CCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCC--chhHHHHH------
Confidence 79999999999999999999887642 122221 111111121 2346799999999 44444433
Q ss_pred HHhhccCccEEEEEecCCCCC--chHHHHHHHhccc-------------------ccCCCCEEEEEeccCCCChhhHHH-
Q 018949 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGD-------------------HKDKLPILLVLNKKDLIKPGEIAK- 246 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-------------------~~~~~p~ivv~NK~Dl~~~~~~~~- 246 (348)
..+++.+|++|+|+|.++.. +....|+...... ...+.|++||+||+|+.+......
T Consensus 72 -~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~ 150 (202)
T cd04102 72 -AVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGN 150 (202)
T ss_pred -HHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchH
Confidence 34478999999999998764 4444554444321 114689999999999975432211
Q ss_pred ----HHHHHHhcCCCCeEEEecCCCC
Q 018949 247 ----KLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 247 ----~~~~~~~~~~~~~i~~vSA~~g 268 (348)
....+....+. +.+..+++.+
T Consensus 151 ~~~~~~~~ia~~~~~-~~i~~~c~~~ 175 (202)
T cd04102 151 LVLTARGFVAEQGNA-EEINLNCTNG 175 (202)
T ss_pred HHhhHhhhHHHhcCC-ceEEEecCCc
Confidence 12233333444 4566666654
No 244
>PRK13351 elongation factor G; Reviewed
Probab=99.61 E-value=1.7e-14 Score=148.62 Aligned_cols=117 Identities=24% Similarity=0.276 Sum_probs=83.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-----------ecC------CCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+..+|+|+|+.|+|||||+++|+.....+ ..+ ..+.|.......+.+.+..+++|||||+.+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 34489999999999999999997532110 000 1223333333445667889999999996431
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
...+..+++.+|++++|+|++.+.......++..+.. .++|+++|+||+|+...
T Consensus 87 ---------~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 87 ---------TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADR--YGIPRLIFINKMDRVGA 140 (687)
T ss_pred ---------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEECCCCCCC
Confidence 2334556789999999999998876666666666555 67999999999998753
No 245
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.60 E-value=7.5e-15 Score=117.55 Aligned_cols=154 Identities=19% Similarity=0.193 Sum_probs=108.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
.+.++|-.++|||||+|.+....+. .....|......-++.+...+.+||.|| +..+..+ +..+++.+
T Consensus 22 el~lvGLq~sGKtt~Vn~ia~g~~~---edmiptvGfnmrk~tkgnvtiklwD~gG--q~rfrsm-------WerycR~v 89 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVIARGQYL---EDMIPTVGFNMRKVTKGNVTIKLWDLGG--QPRFRSM-------WERYCRGV 89 (186)
T ss_pred eEEEEeeccCCcceEEEEEeeccch---hhhcccccceeEEeccCceEEEEEecCC--CccHHHH-------HHHHhhcC
Confidence 6999999999999999988765443 2233344444444556678899999999 6555544 44568999
Q ss_pred cEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCCCCCC
Q 018949 197 DCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKYGHG 270 (348)
Q Consensus 197 d~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~~g~g 270 (348)
++++|++|++++. +.....+..++... -.++|++|.+||.|++.+-.-......+.-. .....++.+|++...|
T Consensus 90 ~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~N 169 (186)
T KOG0075|consen 90 SAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVN 169 (186)
T ss_pred cEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCcc
Confidence 9999999998754 33334454444332 2679999999999998754333333332211 1223579999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
++-+.+||.+.-
T Consensus 170 id~~~~Wli~hs 181 (186)
T KOG0075|consen 170 IDITLDWLIEHS 181 (186)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 246
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.60 E-value=6.7e-15 Score=146.07 Aligned_cols=160 Identities=19% Similarity=0.180 Sum_probs=107.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-----ec----------C------CCCceEEeEEEEEeCCCeeEEEEeCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----VT----------N------KPQTTRHRILGICSGPEYQMILYDTPG 172 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-----~~----------~------~~~~t~~~~~~~~~~~~~~~~l~DtpG 172 (348)
+..+|+|+|++++|||||+++|+.....+ +. + ..+.|.......+.+++..+++|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 44489999999999999999986321110 10 0 012233333345667889999999999
Q ss_pred CchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHH
Q 018949 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE 252 (348)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~ 252 (348)
+.+ +...+..++..+|++|+|+|++.+.......+...++. .++|+++++||+|+.... ..+....+.
T Consensus 90 ~~d---------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~~~PiivviNKiD~~~~~-~~~ll~~i~ 157 (527)
T TIGR00503 90 HED---------FSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL--RDTPIFTFMNKLDRDIRD-PLELLDEVE 157 (527)
T ss_pred hhh---------HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECccccCCC-HHHHHHHHH
Confidence 632 22334556789999999999998887776777776666 679999999999986432 222233333
Q ss_pred hcC---CCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCC
Q 018949 253 KFT---DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPK 291 (348)
Q Consensus 253 ~~~---~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~ 291 (348)
... ...-.+|+ |...++..+.+.++..++.|+.
T Consensus 158 ~~l~~~~~~~~~PI------g~~~~f~gv~d~l~~~~~~y~~ 193 (527)
T TIGR00503 158 NELKINCAPITWPI------GCGKLFKGVYHLLKDETYLYQS 193 (527)
T ss_pred HHhCCCCccEEEEe------cCCCceeEEEEcccCcceecCc
Confidence 332 22234666 4456777788888877777754
No 247
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.60 E-value=3.9e-14 Score=125.54 Aligned_cols=159 Identities=25% Similarity=0.263 Sum_probs=104.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.+|+++|.+|||||||++++.+..+.........+........... ...+.+|||+| +..+..+ +..++.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~g--q~~~~~~-------~~~y~~ 76 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG--QEEYRSL-------RPEYYR 76 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCC--HHHHHHH-------HHHHhc
Confidence 5899999999999999999999887632222222222222222221 56799999999 5444433 445578
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhccccc-CCCCEEEEEeccCCCChhhHHHH--------------HHHHHhc-CC
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKK--------------LEWYEKF-TD 256 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~~~~~~--------------~~~~~~~-~~ 256 (348)
.++++++|+|.+... ......+...+.... .+.|+++|+||+|+......... ....... ..
T Consensus 77 ~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (219)
T COG1100 77 GANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVA 156 (219)
T ss_pred CCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhc
Confidence 999999999998522 334444444444432 36999999999999875421110 0000011 11
Q ss_pred CCeEEEecCC--CCCCHHHHHHHHHHhCC
Q 018949 257 VDEVIPVSAK--YGHGVEDIRDWILTKLP 283 (348)
Q Consensus 257 ~~~i~~vSA~--~g~gi~eL~~~i~~~l~ 283 (348)
...++.+|++ ++.|+.+++..+...+.
T Consensus 157 ~~~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 157 NPALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred ccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 2237999999 99999999999887764
No 248
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=4e-15 Score=122.54 Aligned_cols=160 Identities=24% Similarity=0.305 Sum_probs=109.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCce----eeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKL----SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~----~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.|+|+|.-|+|||||+.+.-...- ........+|.-...+.+.....++.+||..| ++.-.++ +..+
T Consensus 19 ~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgG--Qe~lrSl-------w~~y 89 (197)
T KOG0076|consen 19 SVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGG--QESLRSL-------WKKY 89 (197)
T ss_pred hheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCC--hHHHHHH-------HHHH
Confidence 599999999999999998643221 11112233444555555666678899999999 5443433 4456
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHHHHHHHHH--hc--CCCCeEEEecC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYE--KF--TDVDEVIPVSA 265 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~--~~--~~~~~i~~vSA 265 (348)
+..|++++||+|++++. +.....+...... ...+.|+++.+||.|+.+..+..+....+. .. ....++.||||
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSa 169 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSA 169 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchh
Confidence 88999999999998744 2211222222111 126899999999999988765554443333 22 23357899999
Q ss_pred CCCCCHHHHHHHHHHhCCCC
Q 018949 266 KYGHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~~ 285 (348)
.+|+||++-..|+...++..
T Consensus 170 l~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 170 LTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhcccHHHHHHHHHHHHhhc
Confidence 99999999999999888664
No 249
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.59 E-value=9.5e-15 Score=137.50 Aligned_cols=158 Identities=25% Similarity=0.310 Sum_probs=113.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceee--------------ecCCCCceEEeEEEEEe-----CCCeeEEEEeCCCCchh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSI--------------VTNKPQTTRHRILGICS-----GPEYQMILYDTPGIIEK 176 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~--------------~~~~~~~t~~~~~~~~~-----~~~~~~~l~DtpG~~~~ 176 (348)
.+..|+-+-..|||||..+|+...... .....|.|.-.+...+. ++.+.++++||||+++.
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 378999999999999999987432211 12223444443333322 24588999999999887
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCC
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (348)
.+.-. +.+..|.++++|||++.+.+.+.- .+.......+.-+|-|+||+||+.++ .+....++....+
T Consensus 90 sYEVS---------RSLAACEGalLvVDAsQGveAQTl--AN~YlAle~~LeIiPViNKIDLP~Ad-pervk~eIe~~iG 157 (603)
T COG0481 90 SYEVS---------RSLAACEGALLVVDASQGVEAQTL--ANVYLALENNLEIIPVLNKIDLPAAD-PERVKQEIEDIIG 157 (603)
T ss_pred EEEeh---------hhHhhCCCcEEEEECccchHHHHH--HHHHHHHHcCcEEEEeeecccCCCCC-HHHHHHHHHHHhC
Confidence 65432 336789999999999999876543 33222223678899999999998754 3445566666665
Q ss_pred CC--eEEEecCCCCCCHHHHHHHHHHhCCCC
Q 018949 257 VD--EVIPVSAKYGHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 257 ~~--~i~~vSA~~g~gi~eL~~~i~~~l~~~ 285 (348)
.. ..+.+||++|.|++++++.|.+.+|..
T Consensus 158 id~~dav~~SAKtG~gI~~iLe~Iv~~iP~P 188 (603)
T COG0481 158 IDASDAVLVSAKTGIGIEDVLEAIVEKIPPP 188 (603)
T ss_pred CCcchheeEecccCCCHHHHHHHHHhhCCCC
Confidence 53 479999999999999999999999863
No 250
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.59 E-value=3.2e-15 Score=127.95 Aligned_cols=161 Identities=18% Similarity=0.168 Sum_probs=115.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEe-CCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
+..++++||..++|||+|+..+....+. ..+.+|--+... ..+. ...+.+.+|||+| ++.++.++..
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp--~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAG--qedYDrlRpl------ 72 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFP--EEYVPTVFDNYSANVTVDDGKPVELGLWDTAG--QEDYDRLRPL------ 72 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCc--ccccCeEEccceEEEEecCCCEEEEeeeecCC--Cccccccccc------
Confidence 4458999999999999999988877654 333333333333 3342 5567799999999 6666655422
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-------------HHHHHHHHhcC
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-------------AKKLEWYEKFT 255 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------------~~~~~~~~~~~ 255 (348)
.+.++|+++++++..++. ......|...++...++.|+|+|++|.||.+.... ......+.+.+
T Consensus 73 -sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~i 151 (198)
T KOG0393|consen 73 -SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEI 151 (198)
T ss_pred -CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHh
Confidence 478999999988887654 44445555566666689999999999999843211 12234555667
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Q 018949 256 DVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 256 ~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~ 285 (348)
+...+++|||++..|+.++|+.........
T Consensus 152 ga~~y~EcSa~tq~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 152 GAVKYLECSALTQKGVKEVFDEAIRAALRP 181 (198)
T ss_pred CcceeeeehhhhhCCcHHHHHHHHHHHhcc
Confidence 777899999999999999999988766543
No 251
>PTZ00258 GTP-binding protein; Provisional
Probab=99.59 E-value=2.7e-14 Score=135.66 Aligned_cols=90 Identities=24% Similarity=0.228 Sum_probs=71.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~ 176 (348)
...+|+|+|.||||||||+|+|.+.+. .++++|+||+.+..+.+...+ .++.++||||+...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 445899999999999999999988875 578999999999888876542 35899999999753
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCC
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDAC 206 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~ 206 (348)
... ...+...++..++.+|++++|+|+.
T Consensus 99 a~~--g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASE--GEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred Ccc--hhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 322 2233456667789999999999984
No 252
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=2.8e-14 Score=113.48 Aligned_cols=155 Identities=21% Similarity=0.228 Sum_probs=107.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
+-.|+|..|||||.|+..+...++.... .+.+..-......+......+.+|||+| +++++ ..++++++.
T Consensus 13 kyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtag--qerfr-------avtrsyyrg 83 (215)
T KOG0097|consen 13 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG--QERFR-------AVTRSYYRG 83 (215)
T ss_pred EEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeeccc--HHHHH-------HHHHHHhcc
Confidence 7889999999999999999988764211 1222222223334566778899999999 65544 446677899
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
+-..++|+|.+... .....|+......-.++..+++++||.|+...+++ -+....+....+. -++++||++|.|++
T Consensus 84 aagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl-~fle~saktg~nve 162 (215)
T KOG0097|consen 84 AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGL-MFLEASAKTGQNVE 162 (215)
T ss_pred ccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCe-EEEEecccccCcHH
Confidence 99999999998654 33334444333222366778899999999865543 2233444444554 68999999999999
Q ss_pred HHHHHHHHh
Q 018949 273 DIRDWILTK 281 (348)
Q Consensus 273 eL~~~i~~~ 281 (348)
+.|-...+.
T Consensus 163 dafle~akk 171 (215)
T KOG0097|consen 163 DAFLETAKK 171 (215)
T ss_pred HHHHHHHHH
Confidence 987655443
No 253
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.57 E-value=6.9e-15 Score=117.62 Aligned_cols=112 Identities=21% Similarity=0.361 Sum_probs=70.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCcee---eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLS---IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
||+++|.+|||||||+++|.+.... ......+.+.......+......+.+||++|. ..+...... .+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~--~~~~~~~~~-------~~ 71 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQ--EEFYSQHQF-------FL 71 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSS--HCHHCTSHH-------HH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCcc--ceecccccc-------hh
Confidence 6999999999999999999987765 22333344444334444455556899999995 222222111 15
Q ss_pred cCccEEEEEecCCCCC--chHHHH--HHHhcccccCCCCEEEEEeccC
Q 018949 194 INADCIVVLVDACKAP--ERIDEI--LEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~--~~~~~~~~~~~~p~ivv~NK~D 237 (348)
..+|++++|+|.++.. ...... ++...+....+.|+++|+||.|
T Consensus 72 ~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 72 KKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred hcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 7899999999998754 222111 1222222236699999999998
No 254
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.57 E-value=1.1e-13 Score=123.39 Aligned_cols=135 Identities=21% Similarity=0.236 Sum_probs=90.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
..|+++|.+|+|||||+|++.+.. ...+....++ . .+....+.++.++||||.. ..+...+.
T Consensus 40 ~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i-~i~~~~~~~i~~vDtPg~~------------~~~l~~ak 102 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----I-TVVTGKKRRLTFIECPNDI------------NAMIDIAK 102 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----E-EEEecCCceEEEEeCCchH------------HHHHHHHH
Confidence 379999999999999999998752 1112222222 1 1233467789999999932 12233357
Q ss_pred CccEEEEEecCCCCCchHHHHHHHhcccccCCCCEE-EEEeccCCCChh-hHHHHHHHH-----HhcCCCCeEEEecCCC
Q 018949 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKPG-EIAKKLEWY-----EKFTDVDEVIPVSAKY 267 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl~~~~-~~~~~~~~~-----~~~~~~~~i~~vSA~~ 267 (348)
.+|++++|+|++.+.......+...+.. .+.|.+ +|+||+|+.... ........+ .......+++++||++
T Consensus 103 ~aDvVllviDa~~~~~~~~~~i~~~l~~--~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~ 180 (225)
T cd01882 103 VADLVLLLIDASFGFEMETFEFLNILQV--HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIV 180 (225)
T ss_pred hcCEEEEEEecCcCCCHHHHHHHHHHHH--cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeecc
Confidence 8999999999998887767777777666 567854 599999997432 222222222 2234557999999998
Q ss_pred CC
Q 018949 268 GH 269 (348)
Q Consensus 268 g~ 269 (348)
+-
T Consensus 181 ~~ 182 (225)
T cd01882 181 HG 182 (225)
T ss_pred CC
Confidence 73
No 255
>PTZ00099 rab6; Provisional
Probab=99.56 E-value=3.7e-14 Score=121.73 Aligned_cols=118 Identities=21% Similarity=0.239 Sum_probs=81.3
Q ss_pred EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEec
Q 018949 158 CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNK 235 (348)
Q Consensus 158 ~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK 235 (348)
+..+...+.+||||| +..+..+ ...+++.+|++|+|+|.++.. +....|+....+....+.|+++|+||
T Consensus 24 ~~~~~v~l~iwDt~G--~e~~~~~-------~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK 94 (176)
T PTZ00099 24 LDEGPVRLQLWDTAG--QERFRSL-------IPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNK 94 (176)
T ss_pred ECCEEEEEEEEECCC--hHHhhhc-------cHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 344567899999999 4444433 234478999999999998753 44445555554433357899999999
Q ss_pred cCCCChhh--HHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCC
Q 018949 236 KDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (348)
Q Consensus 236 ~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~ 286 (348)
+|+..... ..+.... ....+ ..++++||++|.|++++|++|.+.++..+
T Consensus 95 ~DL~~~~~v~~~e~~~~-~~~~~-~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 95 TDLGDLRKVTYEEGMQK-AQEYN-TMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred cccccccCCCHHHHHHH-HHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 99964321 1222222 22223 36899999999999999999999886533
No 256
>PLN00023 GTP-binding protein; Provisional
Probab=99.55 E-value=9.5e-14 Score=128.11 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=79.3
Q ss_pred CCCCccEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEe-------------CCCeeEEEEeCCCCchh
Q 018949 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICS-------------GPEYQMILYDTPGIIEK 176 (348)
Q Consensus 111 ~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~-------------~~~~~~~l~DtpG~~~~ 176 (348)
+.....||+++|..|||||||++++.+..+... .++.+.+.......+. ...+.+.||||+| +.
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAG--qE 94 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSG--HE 94 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCC--Ch
Confidence 445566999999999999999999998776421 1222222221111221 1246799999999 55
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCC--chHHHHHHHhcccc------------cCCCCEEEEEeccCCCCh
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDH------------KDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~------------~~~~p~ivv~NK~Dl~~~ 241 (348)
.+..+. ..+++.+|++|+|+|.++.. .....|+..+.... ..++|++||+||+|+...
T Consensus 95 rfrsL~-------~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 95 RYKDCR-------SLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhh-------HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 555443 34488999999999998744 33444443333211 125899999999999653
No 257
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.3e-13 Score=109.55 Aligned_cols=157 Identities=19% Similarity=0.189 Sum_probs=111.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+.+|-.++||||++..|.-.....+.+ |.......+.++...+++||..| +...+ ..++.|+
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ip----TvGFnvetVtykN~kfNvwdvGG--qd~iR-------plWrhYy 82 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIP----TVGFNVETVTYKNVKFNVWDVGG--QDKIR-------PLWRHYY 82 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCccccc----ccceeEEEEEeeeeEEeeeeccC--chhhh-------HHHHhhc
Confidence 34589999999999999999997765432222 22233445567778899999999 43322 3466778
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHH---HhcCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWY---EKFTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~---~~~~~~~~i~~vSA~~ 267 (348)
....++|||+|+.+.. ++....+...+... ..+.|++|..||.|++.+....+....+ ......+.+.++||.+
T Consensus 83 ~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~ 162 (180)
T KOG0071|consen 83 TGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALS 162 (180)
T ss_pred cCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeecccccc
Confidence 9999999999997653 44444555544432 2578999999999998754433333222 2233445789999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 018949 268 GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (348)
|.|+.+-+.++.+.+.
T Consensus 163 gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 163 GDGLKEGLSWLSNNLK 178 (180)
T ss_pred chhHHHHHHHHHhhcc
Confidence 9999999999987664
No 258
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.54 E-value=1.3e-13 Score=134.56 Aligned_cols=148 Identities=20% Similarity=0.215 Sum_probs=96.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCcee------------------------ee------cCCCCceEEeEEEEEeCCCee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLS------------------------IV------TNKPQTTRHRILGICSGPEYQ 164 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~------------------------~~------~~~~~~t~~~~~~~~~~~~~~ 164 (348)
..+|+++|+.++|||||+.+|+..... .+ ....+.|.+.....+..++..
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~~ 86 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYY 86 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCEE
Confidence 347999999999999999998732110 00 111234555544556677889
Q ss_pred EEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-c------hHHHHHHHhcccccCCCC-EEEEEecc
Q 018949 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-E------RIDEILEEGVGDHKDKLP-ILLVLNKK 236 (348)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-~------~~~~~~~~~~~~~~~~~p-~ivv~NK~ 236 (348)
++++||||+.+ +...+...+..+|++|+|+|++.+. + .+....+.++.. .++| +|+++||+
T Consensus 87 i~liDtPGh~d---------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNKm 155 (447)
T PLN00043 87 CTVIDAPGHRD---------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT--LGVKQMICCCNKM 155 (447)
T ss_pred EEEEECCCHHH---------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH--cCCCcEEEEEEcc
Confidence 99999999533 3344556678999999999998762 1 344445545544 5675 68899999
Q ss_pred CCCCh----hhHHHHHHHHH---hcCC----CCeEEEecCCCCCCHHH
Q 018949 237 DLIKP----GEIAKKLEWYE---KFTD----VDEVIPVSAKYGHGVED 273 (348)
Q Consensus 237 Dl~~~----~~~~~~~~~~~---~~~~----~~~i~~vSA~~g~gi~e 273 (348)
|+... ....+....+. ...+ ..+++++||.+|+|+.+
T Consensus 156 D~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 156 DATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 98631 22222222222 2222 35799999999999854
No 259
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.54 E-value=2.4e-15 Score=118.42 Aligned_cols=162 Identities=19% Similarity=0.185 Sum_probs=105.4
Q ss_pred EEcCCCCChHHHHHHHhCCceeeecCCCCc-eEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 120 VLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 120 i~G~~~~GKSsLin~l~~~~~~~~~~~~~~-t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
++|.+++|||.|+-++-...+.. .....| ..+..... +....+.+++|||+| +++++++ +..|++++
T Consensus 2 llgds~~gktcllir~kdgafl~-~~fistvgid~rnkli~~~~~kvklqiwdtag--qerfrsv-------t~ayyrda 71 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLA-GNFISTVGIDFRNKLIDMDDKKVKLQIWDTAG--QERFRSV-------THAYYRDA 71 (192)
T ss_pred ccccCccCceEEEEEeccCceec-CceeeeeeeccccceeccCCcEEEEEEeeccc--hHHHhhh-------hHhhhccc
Confidence 68999999999997766554432 111111 11111222 344567899999999 6666655 45668999
Q ss_pred cEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 197 DCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 197 d~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
|.+++++|..+.. .....|+.+.-.-....+.+.+++||+|+...+.+ .+....+....+. |++++||++|-|++.
T Consensus 72 ~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~i-pfmetsaktg~nvd~ 150 (192)
T KOG0083|consen 72 DALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGI-PFMETSAKTGFNVDL 150 (192)
T ss_pred ceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCC-CceeccccccccHhH
Confidence 9999999998654 44444444332222256788999999999653322 1222334444444 899999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCc
Q 018949 274 IRDWILTKLPLGPAYYPKD 292 (348)
Q Consensus 274 L~~~i~~~l~~~~~~~~~~ 292 (348)
.|-.|.+.+.......|++
T Consensus 151 af~~ia~~l~k~~~~~~~~ 169 (192)
T KOG0083|consen 151 AFLAIAEELKKLKMGAPPE 169 (192)
T ss_pred HHHHHHHHHHHhccCCCCC
Confidence 9999988776544444433
No 260
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.53 E-value=1.6e-13 Score=123.83 Aligned_cols=128 Identities=19% Similarity=0.229 Sum_probs=86.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh-hhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-HMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~-~~l~~~~~~~~~~~ 192 (348)
...+|+++|.+|||||||+|+|+|.....++...++|..........++..+.+|||||+.+... ..........+..+
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~ 109 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRY 109 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHH
Confidence 44589999999999999999999998766676767777666656666778999999999976532 11222233334444
Q ss_pred cc--CccEEEEEecCCCC-CchHHHHHHHhccc-ccC--CCCEEEEEeccCCCCh
Q 018949 193 GI--NADCIVVLVDACKA-PERIDEILEEGVGD-HKD--KLPILLVLNKKDLIKP 241 (348)
Q Consensus 193 ~~--~ad~iv~VvD~~~~-~~~~~~~~~~~~~~-~~~--~~p~ivv~NK~Dl~~~ 241 (348)
+. ..|+++||...+.. ....+..+.+.+.. ++. -.++++|+||+|...+
T Consensus 110 l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 110 LKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 43 57889998765432 23333334433332 221 2579999999998643
No 261
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.53 E-value=5.6e-14 Score=111.85 Aligned_cols=161 Identities=20% Similarity=0.258 Sum_probs=113.4
Q ss_pred CCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 111 ~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
+..+..+|+++|-.|+||||++..|.+.++....++.+... ..+-..+.+.+++||..| +... ...+.
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~---k~v~~~g~f~LnvwDiGG--qr~I-------RpyWs 80 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNT---KKVEYDGTFHLNVWDIGG--QRGI-------RPYWS 80 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcce---EEEeecCcEEEEEEecCC--cccc-------chhhh
Confidence 33567799999999999999999999998765555544332 222233448899999999 4322 23456
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhccccc-CCCCEEEEEeccCCCChhhHHHHHHHHH---hcCCCCeEEEec
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEIAKKLEWYE---KFTDVDEVIPVS 264 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~~~~~~~~~~~---~~~~~~~i~~vS 264 (348)
.|+.+.|.+|||+|+++.. ++..+.+.+++...+ ..+|+.+..||.|+......++....+. -....+++-.||
T Consensus 81 NYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~cs 160 (185)
T KOG0074|consen 81 NYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECS 160 (185)
T ss_pred hhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCc
Confidence 7799999999999976532 444444555444322 6789999999999987655544332222 122345789999
Q ss_pred CCCCCCHHHHHHHHHHhCC
Q 018949 265 AKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~ 283 (348)
|.+++|+.+-.+|+.....
T Consensus 161 als~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 161 ALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred cccccCccCcchhhhcCCC
Confidence 9999999999999887654
No 262
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=2e-14 Score=116.49 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=103.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEE----eEEEEEeC---------CCeeEEEEeCCCCchhhhhhhHH
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRH----RILGICSG---------PEYQMILYDTPGIIEKKIHMLDS 183 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~----~~~~~~~~---------~~~~~~l~DtpG~~~~~~~~l~~ 183 (348)
+...+|.+||||||++.++...++.. ...+|.. ....+++. ..+.+.+|||+| +++++++-.
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~~---qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG--QERFRSLTT 85 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFNT---QFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG--QERFRSLTT 85 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCcccc---eeEEEeecccccceEEEeccCCCCCCcceEEEEeeecccc--HHHHHHHHH
Confidence 56778999999999999988776531 1111110 01112221 124689999999 888887766
Q ss_pred HHHHHHHhhccCccEEEEEecCCCCC--chHHHHHHHhccc--ccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCC
Q 018949 184 MMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGD--HKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVD 258 (348)
Q Consensus 184 ~~~~~~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~--~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~ 258 (348)
.+ +++|-..++++|.++.. -....|+. .++. ...+..+|+++||+|+.+.+.+ +.....+....+.
T Consensus 86 AF-------fRDAMGFlLiFDlT~eqSFLnvrnWlS-QL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kygl- 156 (219)
T KOG0081|consen 86 AF-------FRDAMGFLLIFDLTSEQSFLNVRNWLS-QLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGL- 156 (219)
T ss_pred HH-------HHhhccceEEEeccchHHHHHHHHHHH-HHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCC-
Confidence 55 56777889999997643 23333333 3332 2356678999999999986655 3345566666676
Q ss_pred eEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 259 EVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 259 ~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
|+|++||.+|.|+++-.+.+...+.
T Consensus 157 PYfETSA~tg~Nv~kave~LldlvM 181 (219)
T KOG0081|consen 157 PYFETSACTGTNVEKAVELLLDLVM 181 (219)
T ss_pred CeeeeccccCcCHHHHHHHHHHHHH
Confidence 9999999999999998877776553
No 263
>PRK12740 elongation factor G; Reviewed
Probab=99.52 E-value=1.8e-13 Score=140.83 Aligned_cols=109 Identities=23% Similarity=0.245 Sum_probs=78.2
Q ss_pred EcCCCCChHHHHHHHhCCceeee-----------cC------CCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHH
Q 018949 121 LGKPNVGKSTLANQMIGQKLSIV-----------TN------KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDS 183 (348)
Q Consensus 121 ~G~~~~GKSsLin~l~~~~~~~~-----------~~------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~ 183 (348)
+|++|+|||||+++|+.....+. .+ ..+.|.......+.+++..+++|||||+.+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~-------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD-------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH--------
Confidence 59999999999999965432211 11 123444444455667889999999999643
Q ss_pred HHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 184 MMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 184 ~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
+...+..++..+|++++|+|++.+.......++..+.. .++|+++|+||+|+..
T Consensus 73 -~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 73 -FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEK--YGVPRIIFVNKMDRAG 126 (668)
T ss_pred -HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEECCCCCC
Confidence 12234455789999999999998876666656555555 6799999999999874
No 264
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.9e-13 Score=126.57 Aligned_cols=119 Identities=21% Similarity=0.223 Sum_probs=89.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee---------------ecC------CCCceEEeEEEEEeCCCeeEEEEeCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VTN------KPQTTRHRILGICSGPEYQMILYDTPG 172 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~---------------~~~------~~~~t~~~~~~~~~~~~~~~~l~DtpG 172 (348)
+..+.+|+-+|.+|||||..+|+--..++ .++ ..|.+.....-.+.+.+..++|+||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 44479999999999999999976211111 111 112223333344678899999999999
Q ss_pred CchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh
Q 018949 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (348)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~ 243 (348)
+.+.+ +.+.+.+-.+|.+|+|+|+..+.+.+...+.+.++. .++|++-++||+|.....+
T Consensus 91 HeDFS---------EDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrl--R~iPI~TFiNKlDR~~rdP 150 (528)
T COG4108 91 HEDFS---------EDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRL--RDIPIFTFINKLDREGRDP 150 (528)
T ss_pred ccccc---------hhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhh--cCCceEEEeeccccccCCh
Confidence 75543 334455678999999999999999999999999998 8999999999999865443
No 265
>PRK13768 GTPase; Provisional
Probab=99.50 E-value=4.9e-13 Score=121.32 Aligned_cols=120 Identities=29% Similarity=0.372 Sum_probs=77.7
Q ss_pred eEEEEeCCCCchhh-hhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhc---ccccCCCCEEEEEeccCCC
Q 018949 164 QMILYDTPGIIEKK-IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGV---GDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 164 ~~~l~DtpG~~~~~-~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~---~~~~~~~p~ivv~NK~Dl~ 239 (348)
.+.++||||..+.. +......+.+...... ++++++|+|++......+......+ .....++|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 69999999964321 2333333333332221 8999999999765544332222211 1112579999999999998
Q ss_pred ChhhHHHHHHHH----------------------------HhcCCCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Q 018949 240 KPGEIAKKLEWY----------------------------EKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 240 ~~~~~~~~~~~~----------------------------~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~ 285 (348)
+..+.......+ .......+++++||+++.|+++|+++|.+.++.+
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~ 249 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGG 249 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence 765543332222 2223345889999999999999999999988764
No 266
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.50 E-value=9.5e-13 Score=120.88 Aligned_cols=130 Identities=16% Similarity=0.214 Sum_probs=81.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecC--------CCCce-EEeEEEEEeCCC--eeEEEEeCCCCchhhh-----h
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN--------KPQTT-RHRILGICSGPE--YQMILYDTPGIIEKKI-----H 179 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~--------~~~~t-~~~~~~~~~~~~--~~~~l~DtpG~~~~~~-----~ 179 (348)
.+|+++|.+|+|||||+|+|++..+..... ...|+ .......+..++ ..+.+|||||+.+... .
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~ 84 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWK 84 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHH
Confidence 389999999999999999999987654321 22332 222233333334 5799999999865321 1
Q ss_pred hhHHHHHHHH-------H-----hhc--cCccEEEEEecCCC-CCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhH
Q 018949 180 MLDSMMMKNV-------R-----SAG--INADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (348)
Q Consensus 180 ~l~~~~~~~~-------~-----~~~--~~ad~iv~VvD~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~ 244 (348)
.+...+.... . ..+ .++|+|+|+++.+. +....+..+++.+. .++|+++|+||+|+....++
T Consensus 85 ~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~~e~ 161 (276)
T cd01850 85 PIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLS---KRVNIIPVIAKADTLTPEEL 161 (276)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHh---ccCCEEEEEECCCcCCHHHH
Confidence 1111111111 0 111 25899999999874 45555555555554 36899999999999876554
Q ss_pred HHHH
Q 018949 245 AKKL 248 (348)
Q Consensus 245 ~~~~ 248 (348)
....
T Consensus 162 ~~~k 165 (276)
T cd01850 162 KEFK 165 (276)
T ss_pred HHHH
Confidence 4333
No 267
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.50 E-value=1.5e-13 Score=129.21 Aligned_cols=212 Identities=19% Similarity=0.203 Sum_probs=137.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceee-----------ec----CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSI-----------VT----NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHML 181 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~-----------~~----~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l 181 (348)
+|+|+-+...|||||+.+|+...... -+ ...+.|.-....-+.+++..++++||||+.+..
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG---- 82 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG---- 82 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc----
Confidence 79999999999999999998654221 01 112344444444577889999999999976533
Q ss_pred HHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh---HHHHHHHHHh-----
Q 018949 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEK----- 253 (348)
Q Consensus 182 ~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~~~~~~~----- 253 (348)
.++.+.+.-.|.|+++||+..++..+.+.+..-.-+ .+.+-|+|+||+|.+.++. +.+....+..
T Consensus 83 -----GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~--~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~d 155 (603)
T COG1217 83 -----GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA--LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATD 155 (603)
T ss_pred -----chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH--cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCCh
Confidence 223444678999999999999998887776654333 5777799999999987543 2222222222
Q ss_pred -cCCCCeEEEecCCCC----------CCHHHHHHHHHHhCCCCCCCCCCcccCCCchHHHHHHH-----H-HHHHHhhcc
Q 018949 254 -FTDVDEVIPVSAKYG----------HGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEI-----I-REKIFMQYR 316 (348)
Q Consensus 254 -~~~~~~i~~vSA~~g----------~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~-----i-re~~~~~~~ 316 (348)
...+ |++..||+.| .++.-||+.|.+.++.... .+ +.|.++.+..+ + |-.+-.-.+
T Consensus 156 eQLdF-PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~-~~-----d~PlQ~qvt~Ldyn~y~GrIgigRi~~ 228 (603)
T COG1217 156 EQLDF-PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG-DL-----DEPLQMQVTQLDYNSYVGRIGIGRIFR 228 (603)
T ss_pred hhCCC-cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC-CC-----CCCeEEEEEeeccccccceeEEEEEec
Confidence 2233 8899999887 4788899999999986431 11 22222211100 0 001112233
Q ss_pred CCCCceEEEEeeEEEeccceEEEeeecccc
Q 018949 317 NEVPYACQVCNLTFQHWLIFVEFNAFLNFC 346 (348)
Q Consensus 317 ~eip~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (348)
..+--+.+|.+..-.......+++.+|+|.
T Consensus 229 G~vk~~q~V~~i~~~g~~~~gri~kllgf~ 258 (603)
T COG1217 229 GTVKPNQQVALIKSDGTTENGRITKLLGFL 258 (603)
T ss_pred CcccCCCeEEEEcCCCcEEeeEEEeeeecc
Confidence 445556666666666667788888888775
No 268
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.49 E-value=8.5e-14 Score=122.88 Aligned_cols=152 Identities=20% Similarity=0.235 Sum_probs=88.2
Q ss_pred eeEEEEeCCCCchh-hhhhhHHHHHHHHHhhccCccEEEEEecCCCCC---chHHHHHHHhcccccCCCCEEEEEeccCC
Q 018949 163 YQMILYDTPGIIEK-KIHMLDSMMMKNVRSAGINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 163 ~~~~l~DtpG~~~~-~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~---~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
...+++||||.++. .+...+..+.+... .....+++||+|..+.. .-+...+...--..+.+.|+|+|.||+|+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~la--ss~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLA--SSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDV 193 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHh--hcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccc
Confidence 45899999997652 22222233333322 23556899999986543 22233332211112278999999999999
Q ss_pred CChhhHHHHHHH-------HH-------------------hcCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCc
Q 018949 239 IKPGEIAKKLEW-------YE-------------------KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKD 292 (348)
Q Consensus 239 ~~~~~~~~~~~~-------~~-------------------~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~ 292 (348)
.+..-..+.... +. .+......+.||+.+|.|.++++.++...+.+....|.++
T Consensus 194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~ykp~ 273 (366)
T KOG1532|consen 194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEYKPE 273 (366)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHhhhH
Confidence 876433222211 11 1223347899999999999999999998876544334333
Q ss_pred ccCCCchHHHHHHHHHHHHHhhcc
Q 018949 293 IVSEHPERFFVGEIIREKIFMQYR 316 (348)
Q Consensus 293 ~~~~~~~~~~~~e~ire~~~~~~~ 316 (348)
............+..+.+-++.++
T Consensus 274 ~Ek~k~~k~~~ee~~k~k~le~l~ 297 (366)
T KOG1532|consen 274 YEKKKAEKRLAEEERKKKQLEKLM 297 (366)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHH
Confidence 333333333344444555555444
No 269
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=5.8e-13 Score=124.34 Aligned_cols=150 Identities=21% Similarity=0.250 Sum_probs=101.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC------------------------ceeeecCCC------CceEEeEEEEEeCCCee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ------------------------KLSIVTNKP------QTTRHRILGICSGPEYQ 164 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~------------------------~~~~~~~~~------~~t~~~~~~~~~~~~~~ 164 (348)
..+++++|++++|||||+-+|+.. +++.+.+.. |.|.+.....+..+.+.
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~ 86 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYN 86 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCce
Confidence 348999999999999999998632 122333322 44555555556677788
Q ss_pred EEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCC-------CchHHHHHHHhcccccCCCCEEEEEeccC
Q 018949 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~-------~~~~~~~~~~~~~~~~~~~p~ivv~NK~D 237 (348)
+.++||||+.+ +...+.....+||++|+|+|+..+ ...+.....-+.+.++ -..+||++||+|
T Consensus 87 ~tIiDaPGHrd---------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD 156 (428)
T COG5256 87 FTIIDAPGHRD---------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMD 156 (428)
T ss_pred EEEeeCCchHH---------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEccc
Confidence 99999999543 334455557899999999999877 4556666555555532 346889999999
Q ss_pred CCC--hhhHHHHHH---HHHhcCCC----CeEEEecCCCCCCHHHH
Q 018949 238 LIK--PGEIAKKLE---WYEKFTDV----DEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 238 l~~--~~~~~~~~~---~~~~~~~~----~~i~~vSA~~g~gi~eL 274 (348)
+++ ....++... .+.+..+. .+++||||.+|.|+.+-
T Consensus 157 ~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 157 LVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 985 222222222 23333222 46999999999998753
No 270
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.48 E-value=7.3e-13 Score=124.57 Aligned_cols=88 Identities=24% Similarity=0.288 Sum_probs=70.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCchhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI 178 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~ 178 (348)
.+|+|+|.||||||||+|+|++.+ ..++++|+||+.+..+++...+ ..+.++||||+.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 379999999999999999999998 4578999999998887766443 2589999999975332
Q ss_pred hhhHHHHHHHHHhhccCccEEEEEecCC
Q 018949 179 HMLDSMMMKNVRSAGINADCIVVLVDAC 206 (348)
Q Consensus 179 ~~l~~~~~~~~~~~~~~ad~iv~VvD~~ 206 (348)
....+...++..++.||++++|+|+.
T Consensus 82 --~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 --KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred --hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 22334456777789999999999985
No 271
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.48 E-value=9.3e-14 Score=125.28 Aligned_cols=159 Identities=23% Similarity=0.206 Sum_probs=111.4
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe-CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
...+.|++||++|+|||||+++|.+.... ..+....|.++...... ..+..+.+.||-|+.+.-+..+-..| +.++.
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~-p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF-~ATLe 253 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALY-PNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAF-QATLE 253 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcC-ccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHH-HHHHH
Confidence 34568999999999999999999965543 23444455544332222 23567899999999887666666665 45566
Q ss_pred hccCccEEEEEecCCCCC-chHHHHHHHhcccccC-CCC----EEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecC
Q 018949 192 AGINADCIVVLVDACKAP-ERIDEILEEGVGDHKD-KLP----ILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~~-~~p----~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA 265 (348)
....+|++++|+|.+++. +.+...++..++..+- ..| +|=|-||+|......-.+ .. ..+++||
T Consensus 254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E--------~n--~~v~isa 323 (410)
T KOG0410|consen 254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE--------KN--LDVGISA 323 (410)
T ss_pred HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc--------cC--Ccccccc
Confidence 778999999999999987 4455566666666321 222 566888888765332111 11 2589999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 018949 266 KYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (348)
++|+|++++++.+...+.
T Consensus 324 ltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 324 LTGDGLEELLKAEETKVA 341 (410)
T ss_pred ccCccHHHHHHHHHHHhh
Confidence 999999999999887654
No 272
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.47 E-value=3.7e-13 Score=122.68 Aligned_cols=86 Identities=26% Similarity=0.325 Sum_probs=68.8
Q ss_pred EEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCe-----------------eEEEEeCCCCchhhhhh
Q 018949 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-----------------QMILYDTPGIIEKKIHM 180 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~l~DtpG~~~~~~~~ 180 (348)
|+|+|.||||||||+|+|++.+. .++++|++|..+..+.+...+. .+.++|+||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~- 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK- 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch-
Confidence 68999999999999999999987 5789999999988877665443 4999999999754321
Q ss_pred hHHHHHHHHHhhccCccEEEEEecCC
Q 018949 181 LDSMMMKNVRSAGINADCIVVLVDAC 206 (348)
Q Consensus 181 l~~~~~~~~~~~~~~ad~iv~VvD~~ 206 (348)
...+...++..++.+|++++|+|+.
T Consensus 79 -~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 79 -GEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred -hhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 2233345667789999999999974
No 273
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.46 E-value=5.6e-13 Score=104.17 Aligned_cols=142 Identities=20% Similarity=0.257 Sum_probs=100.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
|++++|..|+|||||.+++.|..... ..|.- ..++. --.+||||..-. +..+.....-...++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly-----kKTQA---ve~~d----~~~IDTPGEy~~-----~~~~Y~aL~tt~~da 65 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY-----KKTQA---VEFND----KGDIDTPGEYFE-----HPRWYHALITTLQDA 65 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh-----cccce---eeccC----ccccCCchhhhh-----hhHHHHHHHHHhhcc
Confidence 79999999999999999999976431 11111 11111 236899994221 122333344456799
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHH
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
|++++|-.+.++.+.....+... ..+|+|-|++|.|+....++......+.... ..++|.+|+..+.|+++|++
T Consensus 66 dvi~~v~~and~~s~f~p~f~~~-----~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG-a~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 66 DVIIYVHAANDPESRFPPGFLDI-----GVKKVIGVVTKADLAEDADISLVKRWLREAG-AEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred ceeeeeecccCccccCCcccccc-----cccceEEEEecccccchHhHHHHHHHHHHcC-CcceEEEeccCcccHHHHHH
Confidence 99999999987765544333322 3466999999999997777776666666555 66999999999999999999
Q ss_pred HHHHh
Q 018949 277 WILTK 281 (348)
Q Consensus 277 ~i~~~ 281 (348)
++...
T Consensus 140 ~L~~~ 144 (148)
T COG4917 140 YLASL 144 (148)
T ss_pred HHHhh
Confidence 98753
No 274
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.44 E-value=6.8e-13 Score=128.02 Aligned_cols=174 Identities=17% Similarity=0.161 Sum_probs=118.4
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
..+..||+++|..|+||||||-+++...+.. ...+......+..-+..+..+..++||+--.+.. .....
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~-~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~---------~~l~~ 75 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVD-AVPRRLPRILIPADVTPENVPTSIVDTSSDSDDR---------LCLRK 75 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccc-cccccCCccccCCccCcCcCceEEEecccccchh---------HHHHH
Confidence 3466799999999999999999999988652 2222222333334445566779999998532211 12234
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhccccc---CCCCEEEEEeccCCCChhhH--H-HHHHHHHhcCCCCeEEEe
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEI--A-KKLEWYEKFTDVDEVIPV 263 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~--~-~~~~~~~~~~~~~~i~~v 263 (348)
.+++||++++|+..+++. ......|+.+++... .++|+|+|+||+|....... + .+...+..+.....++.|
T Consensus 76 EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciec 155 (625)
T KOG1707|consen 76 EIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIEC 155 (625)
T ss_pred HHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhh
Confidence 468999999999887643 555667788887765 68999999999998753211 1 233334444444567999
Q ss_pred cCCCCCCHHHHHHHHHHhCCC-CCCCCCCcccC
Q 018949 264 SAKYGHGVEDIRDWILTKLPL-GPAYYPKDIVS 295 (348)
Q Consensus 264 SA~~g~gi~eL~~~i~~~l~~-~~~~~~~~~~~ 295 (348)
||++-.++.++|.+..+.+-. ..+.|..+...
T Consensus 156 SA~~~~n~~e~fYyaqKaVihPt~PLyda~~qe 188 (625)
T KOG1707|consen 156 SALTLANVSELFYYAQKAVIHPTSPLYDAEEQE 188 (625)
T ss_pred hhhhhhhhHhhhhhhhheeeccCcccccccccc
Confidence 999999999999999887743 23345444433
No 275
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.44 E-value=3.4e-12 Score=117.16 Aligned_cols=126 Identities=19% Similarity=0.261 Sum_probs=81.9
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
....+|+++|.+|+||||++|+|+|.+...++....++..........++..+.+|||||+.+.. .........+..+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~--~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG--YINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH--HHHHHHHHHHHHH
Confidence 35568999999999999999999999876666665555544444444578899999999986532 2222222222222
Q ss_pred c--cCccEEEEEecCCC-CCchHHHHHHHhcccc-c--CCCCEEEEEeccCCCC
Q 018949 193 G--INADCIVVLVDACK-APERIDEILEEGVGDH-K--DKLPILLVLNKKDLIK 240 (348)
Q Consensus 193 ~--~~ad~iv~VvD~~~-~~~~~~~~~~~~~~~~-~--~~~p~ivv~NK~Dl~~ 240 (348)
+ ...|+++||...+. .....+..+.+.+... + --.+.|||+|+.|..+
T Consensus 114 l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 2 36899999955432 2333333344433332 1 2357899999999764
No 276
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.43 E-value=2.2e-12 Score=135.39 Aligned_cols=144 Identities=23% Similarity=0.236 Sum_probs=96.7
Q ss_pred CChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC------------------CeeEEEEeCCCCchhhhhhhHHHHHH
Q 018949 126 VGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP------------------EYQMILYDTPGIIEKKIHMLDSMMMK 187 (348)
Q Consensus 126 ~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------------~~~~~l~DtpG~~~~~~~~l~~~~~~ 187 (348)
++||||+.+|.+.+++ .....+.|++.-...+..+ -..+.+|||||+ ..+..+.
T Consensus 472 ~~KTtLLD~iR~t~v~-~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGh--e~F~~lr----- 543 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVA-KKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGH--EAFTSLR----- 543 (1049)
T ss_pred cccccHHHHHhCCCcc-cccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCc--HHHHHHH-----
Confidence 3599999999998875 3344555655432222211 123899999994 4444332
Q ss_pred HHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh--------------HHHHHH----
Q 018949 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--------------IAKKLE---- 249 (348)
Q Consensus 188 ~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~--------------~~~~~~---- 249 (348)
...+..+|++++|+|++++...+.......+.. .++|+++|+||+|+..... ......
T Consensus 544 --~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~--~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~ 619 (1049)
T PRK14845 544 --KRGGSLADLAVLVVDINEGFKPQTIEAINILRQ--YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEI 619 (1049)
T ss_pred --HhhcccCCEEEEEEECcccCCHhHHHHHHHHHH--cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHH
Confidence 233678999999999998877766666666666 6789999999999963210 000011
Q ss_pred -------HH-------------HhcCCCCeEEEecCCCCCCHHHHHHHHHHh
Q 018949 250 -------WY-------------EKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 250 -------~~-------------~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~ 281 (348)
.+ ....+..+++++||++|+|+++|+.+|...
T Consensus 620 ~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 620 KLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 11 123345689999999999999999988653
No 277
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=2.9e-12 Score=115.60 Aligned_cols=164 Identities=18% Similarity=0.218 Sum_probs=111.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCcee-----------eecCCCCceEEeE-----------EEEEeCC------CeeE
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-----------IVTNKPQTTRHRI-----------LGICSGP------EYQM 165 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~-----------~~~~~~~~t~~~~-----------~~~~~~~------~~~~ 165 (348)
-..+|+.+|+...|||||..+|.|-.-. +.-.+..++.... ...+... -..+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 3458999999999999999999874321 1001111111100 0000000 1358
Q ss_pred EEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH
Q 018949 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI 244 (348)
Q Consensus 166 ~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~ 244 (348)
.++|+||+ ..++..+++-..-.|++++|+.++.+. +.+....+..+.-. .-+.+|+|-||+|+++.+..
T Consensus 89 SfVDaPGH---------e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-gik~iiIvQNKIDlV~~E~A 158 (415)
T COG5257 89 SFVDAPGH---------ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII-GIKNIIIVQNKIDLVSRERA 158 (415)
T ss_pred EEeeCCch---------HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-ccceEEEEecccceecHHHH
Confidence 89999994 224556666667889999999998765 55555444433332 23678999999999998776
Q ss_pred HHHHHHHHhcC-----CCCeEEEecCCCCCCHHHHHHHHHHhCCCCCC
Q 018949 245 AKKLEWYEKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPA 287 (348)
Q Consensus 245 ~~~~~~~~~~~-----~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~ 287 (348)
.+..++++++. ...|++|+||..+.|++.|+++|.+.++....
T Consensus 159 lE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 159 LENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred HHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence 66666666543 33599999999999999999999999986443
No 278
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.41 E-value=4.6e-12 Score=119.03 Aligned_cols=222 Identities=17% Similarity=0.172 Sum_probs=130.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC----cee-----------eecCCCC---ceEEeEE---E---E--EeCCCeeEEEEe
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ----KLS-----------IVTNKPQ---TTRHRIL---G---I--CSGPEYQMILYD 169 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~----~~~-----------~~~~~~~---~t~~~~~---~---~--~~~~~~~~~l~D 169 (348)
..|+++|+.++|||||+|+|.+. +.. .+++.+| +|.++.. . + ...-..++.++|
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlID 97 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVD 97 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEE
Confidence 37999999999999999999988 655 5677788 5544433 1 1 112236799999
Q ss_pred CCCCchhhhhhhHHHHHHH----------------------HHhhcc-CccEEEEEe-cCC------CCCchHHHHHHHh
Q 018949 170 TPGIIEKKIHMLDSMMMKN----------------------VRSAGI-NADCIVVLV-DAC------KAPERIDEILEEG 219 (348)
Q Consensus 170 tpG~~~~~~~~l~~~~~~~----------------------~~~~~~-~ad~iv~Vv-D~~------~~~~~~~~~~~~~ 219 (348)
|+|+..... ++..-.+. +++.+. ++|+.++|. |++ .......+.+...
T Consensus 98 cvG~~v~Ga--lG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 98 CVGYTVKGA--LGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred CCCcccCCC--ccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 999854221 11000011 444466 899999998 875 3344555666677
Q ss_pred cccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCC--CCCHHHHHHHHHHhCCCC-----CCCCCCc
Q 018949 220 VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY--GHGVEDIRDWILTKLPLG-----PAYYPKD 292 (348)
Q Consensus 220 ~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~--g~gi~eL~~~i~~~l~~~-----~~~~~~~ 292 (348)
++. .++|+++|+||+|-.... .......+....+ .|++++|+.. .+.+..+++.++-..|-. .+.|-..
T Consensus 176 Lk~--~~kPfiivlN~~dp~~~e-t~~l~~~l~eky~-vpvl~v~c~~l~~~DI~~il~~vL~EFPv~Ei~~~~P~Wve~ 251 (492)
T TIGR02836 176 LKE--LNKPFIILLNSTHPYHPE-TEALRQELEEKYD-VPVLAMDVESMRESDILSVLEEVLYEFPILEINIDLPSWVEV 251 (492)
T ss_pred HHh--cCCCEEEEEECcCCCCch-hHHHHHHHHHHhC-CceEEEEHHHcCHHHHHHHHHHHHhcCCceEEEeeCchHHHh
Confidence 777 789999999999943322 2223334444444 4777777654 345555555554333210 0111111
Q ss_pred ccCCCchHHHHHHHHHHHHHh---------h--ccCCCCceEEEEeeEEEeccceEEEeeec
Q 018949 293 IVSEHPERFFVGEIIREKIFM---------Q--YRNEVPYACQVCNLTFQHWLIFVEFNAFL 343 (348)
Q Consensus 293 ~~~~~~~~~~~~e~ire~~~~---------~--~~~eip~~~~~~~~~~~~~~~~~~~~~~~ 343 (348)
...++..+..+-+.+++.+-. . ...+.+|.....++.+..-.+.+++..-+
T Consensus 252 L~~~Hwlk~~~~~~i~~~~~~i~~irDv~~~~~~~~~~e~i~~~~l~~i~lg~G~~~i~~~~ 313 (492)
T TIGR02836 252 LDENHWLKENFQSSVKETVKDVYRLRDVDNVVGQLKENEFIESVGLAGIEMGEGVAEIDLYA 313 (492)
T ss_pred cCCCchHHHHHHHHHHHHHHhhhHHhhHHhhhccccccchhhhheeeeEecCCcEEEEEEEc
Confidence 112222222222233332111 1 12467888888888888877777776443
No 279
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.41 E-value=5e-12 Score=102.13 Aligned_cols=163 Identities=21% Similarity=0.227 Sum_probs=110.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC---CeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP---EYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
+..+|+++|.-++|||+++..++..+....+....|-.+.+...+..+ ...+.+.||.|+... .. +.-+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~-~~-------eLpr 79 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG-QQ-------ELPR 79 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCc-hh-------hhhH
Confidence 556999999999999999999987665444555555555554444322 346999999998443 12 2233
Q ss_pred hhccCccEEEEEecCCCCCchHH-HHHHHhcccc--cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCC
Q 018949 191 SAGINADCIVVLVDACKAPERID-EILEEGVGDH--KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~~~~~-~~~~~~~~~~--~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
.++.-+|+.++|++..+...-+. +.+...+... +..+|+++++||+|+..+.+......+..........++++|..
T Consensus 80 hy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~d 159 (198)
T KOG3883|consen 80 HYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMD 159 (198)
T ss_pred hHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEecc
Confidence 45788999999999987552221 1222222221 26799999999999976655443333333333334679999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
...+-+.|.++...+..
T Consensus 160 R~sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 160 RPSLYEPFTYLASRLHQ 176 (198)
T ss_pred chhhhhHHHHHHHhccC
Confidence 99999999999887743
No 280
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=6.4e-13 Score=106.20 Aligned_cols=158 Identities=17% Similarity=0.226 Sum_probs=107.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..++.++|--|+||||++-++--.+....-++++. ....+..++.++.+||..| +.... ..++.|+
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigf----nve~v~yKNLk~~vwdLgg--qtSir-------PyWRcYy 83 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGF----NVETVPYKNLKFQVWDLGG--QTSIR-------PYWRCYY 83 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCc----CccccccccccceeeEccC--ccccc-------HHHHHHh
Confidence 555899999999999999988765554322333333 2334455778899999999 43322 3356678
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCCh---hhHHHHHHHHHhcCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP---GEIAKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
.+.|.+|||||+++.. ......+...+.+. ..+..+++++||.|.... .+....+...+-......+|.+||.+
T Consensus 84 ~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~k 163 (182)
T KOG0072|consen 84 ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVK 163 (182)
T ss_pred cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeecccc
Confidence 9999999999998754 22223333333331 145778899999998653 33333332222233446899999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|+|++...+|+.+.++.
T Consensus 164 g~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 164 GEGLDPAMDWLQRPLKS 180 (182)
T ss_pred ccCCcHHHHHHHHHHhc
Confidence 99999999999987643
No 281
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.40 E-value=6.4e-13 Score=117.95 Aligned_cols=184 Identities=20% Similarity=0.272 Sum_probs=103.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCC--Cce------------------EEeEEEE----------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKP--QTT------------------RHRILGI---------- 157 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~--~~t------------------~~~~~~~---------- 157 (348)
+..+|+|.|+||+|||||+++|. |.++...+..| ..| ..++...
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 45589999999999999999985 44444332222 111 1111111
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC--chHHHHHHHhcccccCC
Q 018949 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDK 226 (348)
Q Consensus 158 ---------~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~ 226 (348)
+...++.++++.|.|.+|.... ...-+|.+++|+-...+. +....-+++.
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~------------I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------- 168 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEVD------------IADMADTVVLVLVPGLGDEIQAIKAGIMEI------- 168 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHHH------------HHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHHH------------HHHhcCeEEEEecCCCccHHHHHhhhhhhh-------
Confidence 2334578999999998874321 146889999998776544 3333334333
Q ss_pred CCEEEEEeccCCCChhhHHHH-HHHHHhc---CC--CCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCchH
Q 018949 227 LPILLVLNKKDLIKPGEIAKK-LEWYEKF---TD--VDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPER 300 (348)
Q Consensus 227 ~p~ivv~NK~Dl~~~~~~~~~-~~~~~~~---~~--~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~ 300 (348)
+-|+|+||+|+......... ...+... .. ..|++.+||.++.|+++|++.|.+..........-+.......+
T Consensus 169 -aDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~sg~~~~rr~~q~~ 247 (266)
T PF03308_consen 169 -ADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKESGELEERRREQAR 247 (266)
T ss_dssp --SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred -ccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHcchHHHHHHHHHH
Confidence 34899999996654432222 2222211 11 24899999999999999999998744211000000111122344
Q ss_pred HHHHHHHHHHHHhhccC
Q 018949 301 FFVGEIIREKIFMQYRN 317 (348)
Q Consensus 301 ~~~~e~ire~~~~~~~~ 317 (348)
.++.+.+++.+.+.++.
T Consensus 248 ~~~~~~~~~~l~~~~~~ 264 (266)
T PF03308_consen 248 REMWELIEEELLERLRA 264 (266)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56777777777776653
No 282
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=9.9e-12 Score=113.04 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=104.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC--cee----eecCCCCceEEeEEEEE---------eCCCeeEEEEeCCCCchhhhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ--KLS----IVTNKPQTTRHRILGIC---------SGPEYQMILYDTPGIIEKKIHM 180 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~--~~~----~~~~~~~~t~~~~~~~~---------~~~~~~~~l~DtpG~~~~~~~~ 180 (348)
.+++++|+..+|||||..+|..- ..+ ..+...+.|.+.-...+ ..+..++.++||||+.
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa------ 81 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA------ 81 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH------
Confidence 58999999999999999998632 111 12333344443322111 2345678999999942
Q ss_pred hHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhH----HHHHHHHHh---
Q 018949 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI----AKKLEWYEK--- 253 (348)
Q Consensus 181 l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~----~~~~~~~~~--- 253 (348)
.+.+.......-.|+.++|+|+..+.+.+....+-.-.. .....+||+||+|....... ++....+.+
T Consensus 82 ---sLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~--~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe 156 (522)
T KOG0461|consen 82 ---SLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL--LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLE 156 (522)
T ss_pred ---HHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh--hccceEEEEeccccccchhhhhHHHHHHHHHHHHHH
Confidence 233445555667899999999998876655443322222 34567999999998765332 222222222
Q ss_pred ---cCCCCeEEEecCCCC----CCHHHHHHHHHHhCCC
Q 018949 254 ---FTDVDEVIPVSAKYG----HGVEDIRDWILTKLPL 284 (348)
Q Consensus 254 ---~~~~~~i~~vSA~~g----~gi~eL~~~i~~~l~~ 284 (348)
..+..|++++||+.| +++.+|.+.+...+..
T Consensus 157 ~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 157 STGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred hcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 345579999999999 8999999999988754
No 283
>PTZ00416 elongation factor 2; Provisional
Probab=99.39 E-value=3.5e-12 Score=133.53 Aligned_cols=115 Identities=20% Similarity=0.251 Sum_probs=82.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceE---------------EeE--EEEEe--------CCCeeEEEE
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR---------------HRI--LGICS--------GPEYQMILY 168 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~---------------~~~--~~~~~--------~~~~~~~l~ 168 (348)
+..+|+|+|+.++|||||+++|++....+.....+++. ... ...+. ..+..++++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 33489999999999999999998744322222222222 111 11121 125679999
Q ss_pred eCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 169 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 169 DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
||||+.+ +...+...+..+|++|+|+|+..+...+.+.++..+.. .++|+|+++||+|+.
T Consensus 98 DtPG~~~---------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~--~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVD---------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQ--ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHh---------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHH--cCCCEEEEEEChhhh
Confidence 9999644 23445666899999999999999988777777777766 678999999999997
No 284
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.39 E-value=3e-12 Score=132.58 Aligned_cols=115 Identities=23% Similarity=0.279 Sum_probs=79.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCC---------------CceEEeEEE--E--EeCCCeeEEEEeCCCCc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP---------------QTTRHRILG--I--CSGPEYQMILYDTPGII 174 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~---------------~~t~~~~~~--~--~~~~~~~~~l~DtpG~~ 174 (348)
+..+|+++|+.++|||||+++|+.....+..... +.|...... . ...++..++++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 3448999999999999999999754322111111 112111111 1 13346789999999975
Q ss_pred hhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
+. ...+...+..+|++|+|+|+..+.....+.++..... .+.|.|+++||+|+.
T Consensus 99 df---------~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~--~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DF---------GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR--ERVKPVLFINKVDRL 152 (731)
T ss_pred Ch---------HHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH--cCCCeEEEEECchhh
Confidence 42 2345566789999999999998887777777666544 467889999999986
No 285
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=8.3e-12 Score=117.49 Aligned_cols=156 Identities=19% Similarity=0.140 Sum_probs=121.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCce--eeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKL--SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.|+..|+...|||||+.++.|..- ......-++|.+.-......++..+.++|.||+.+ +...+...+.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~---------~i~~miag~~ 72 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPD---------FISNLLAGLG 72 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHH---------HHHHHHhhhc
Confidence 488999999999999999998642 22345668888887777777778999999999633 2334455577
Q ss_pred CccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcC--CCCeEEEecCCCCCCHH
Q 018949 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT--DVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~--~~~~i~~vSA~~g~gi~ 272 (348)
..|.+++|||++++...+....+..+..+ .....++|+||+|+.+...++....++.... ...+++.+|+.+|+|++
T Consensus 73 ~~d~alLvV~~deGl~~qtgEhL~iLdll-gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~ 151 (447)
T COG3276 73 GIDYALLVVAADEGLMAQTGEHLLILDLL-GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIE 151 (447)
T ss_pred CCceEEEEEeCccCcchhhHHHHHHHHhc-CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHH
Confidence 89999999999999988887777777763 2234599999999998766665555554433 34578999999999999
Q ss_pred HHHHHHHHhC
Q 018949 273 DIRDWILTKL 282 (348)
Q Consensus 273 eL~~~i~~~l 282 (348)
+|.+.|.++.
T Consensus 152 ~Lk~~l~~L~ 161 (447)
T COG3276 152 ELKNELIDLL 161 (447)
T ss_pred HHHHHHHHhh
Confidence 9999999877
No 286
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.37 E-value=4.5e-12 Score=132.88 Aligned_cols=115 Identities=23% Similarity=0.238 Sum_probs=81.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCc---------------eEEeEE--EEE--------------eCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT---------------TRHRIL--GIC--------------SGPE 162 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~---------------t~~~~~--~~~--------------~~~~ 162 (348)
+..+|+|+|+.++|||||+++|+.....+.....+. |..... ..+ ...+
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 444899999999999999999986543221112211 111111 111 1136
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
..++++||||+.+. ...+...+..+|++|+|+|+..+...+.+.++..+.. .++|+++++||+|+.
T Consensus 98 ~~inliDtPGh~dF---------~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~--~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVDF---------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG--ERIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHHH---------HHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH--CCCCEEEEEECCccc
Confidence 77899999996442 2344566789999999999999988877777777766 789999999999997
No 287
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.37 E-value=5.4e-12 Score=107.11 Aligned_cols=112 Identities=29% Similarity=0.326 Sum_probs=71.3
Q ss_pred EEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE----------------------------------------
Q 018949 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI---------------------------------------- 157 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~---------------------------------------- 157 (348)
|+++|..++|||||+|+|+|.+..+....+.|........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 7899999999999999999987654443333221111100
Q ss_pred ---------------EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchH-HHHHHHhcc
Q 018949 158 ---------------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI-DEILEEGVG 221 (348)
Q Consensus 158 ---------------~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~-~~~~~~~~~ 221 (348)
.......+.|+||||+....... . ..+.+++..+|+++||+++.+..... ...+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~--~---~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~ 155 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH--T---EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLD 155 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT--S---HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHT
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhh--H---HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhc
Confidence 00112248999999985422111 1 34556679999999999998876433 444554555
Q ss_pred cccCCCCEEEEEecc
Q 018949 222 DHKDKLPILLVLNKK 236 (348)
Q Consensus 222 ~~~~~~p~ivv~NK~ 236 (348)
. ....+++|+||+
T Consensus 156 ~--~~~~~i~V~nk~ 168 (168)
T PF00350_consen 156 P--DKSRTIFVLNKA 168 (168)
T ss_dssp T--TCSSEEEEEE-G
T ss_pred C--CCCeEEEEEcCC
Confidence 4 455699999995
No 288
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.36 E-value=1.8e-13 Score=113.24 Aligned_cols=158 Identities=17% Similarity=0.202 Sum_probs=102.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+++|+|..+|||||+|.+++..-+.... .+.++....-...+..++....+|||+| ++.++.+ +..|
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtag--qeEfDaI-------tkAy 89 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAG--QEEFDAI-------TKAY 89 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhcc--chhHHHH-------HHHH
Confidence 4458999999999999999999854332100 0111110000112345567788999999 5555544 4466
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHH-HHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK-LEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
++.|.+.++|+..++.. +....|..+...+ ..++|.++|-||+|+.....+..- .+-+.+... ...+.+|++...
T Consensus 90 yrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e-~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~-~RlyRtSvked~ 167 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDRYSFEATLEWYNKVQKE-TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLH-KRLYRTSVKEDF 167 (246)
T ss_pred hccccceEEEEecccHHHHHHHHHHHHHHHHH-hccCCeEEeeccchhhHhhhcchHHHHHHHHHhh-hhhhhhhhhhhh
Confidence 89999999999987644 3333444333333 267999999999999865543211 111111221 256889999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+..+|.++.+.+
T Consensus 168 NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 168 NVMHVFAYLAEKL 180 (246)
T ss_pred hhHHHHHHHHHHH
Confidence 9999999988755
No 289
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.35 E-value=4.7e-12 Score=111.98 Aligned_cols=166 Identities=16% Similarity=0.151 Sum_probs=98.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh--hhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH--MLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--~l~~~~~~~~~~~~ 193 (348)
+|+++|.+|+||||++|.|+|....... .....|..........++..+.++||||+.+.... .....+.+.+....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~ 81 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCS 81 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhcc
Confidence 7999999999999999999998865332 23344555555555778899999999999664321 12222333333445
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhccc-cc--CCCCEEEEEeccCCCChhhHHHHH---------HHHHhcCCCCeEE
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGD-HK--DKLPILLVLNKKDLIKPGEIAKKL---------EWYEKFTDVDEVI 261 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~-~~--~~~p~ivv~NK~Dl~~~~~~~~~~---------~~~~~~~~~~~i~ 261 (348)
...+++++|+... ..+..+....+.+.. ++ .-..++||+|..|......+.+.+ ..+....+ .++
T Consensus 82 ~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~--R~~ 158 (212)
T PF04548_consen 82 PGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGG--RYH 158 (212)
T ss_dssp T-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT--CEE
T ss_pred CCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCC--EEE
Confidence 6789999999987 454444443333322 22 224688999998877654433222 22233333 345
Q ss_pred EecCC------CCCCHHHHHHHHHHhCCCC
Q 018949 262 PVSAK------YGHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 262 ~vSA~------~g~gi~eL~~~i~~~l~~~ 285 (348)
.++.+ ....+.+|++.|-+++...
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 55444 2356788888888877543
No 290
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.35 E-value=9.2e-12 Score=113.76 Aligned_cols=149 Identities=21% Similarity=0.187 Sum_probs=101.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceee----------e----------------------cCCCCceEEeEEEEEeCCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI----------V----------------------TNKPQTTRHRILGICSGPE 162 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~----------~----------------------~~~~~~t~~~~~~~~~~~~ 162 (348)
..+++.+|...-||||||-+|+.....+ . ....|.|.+.....+..+.
T Consensus 6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~K 85 (431)
T COG2895 6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTEK 85 (431)
T ss_pred ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccccc
Confidence 3489999999999999999998654432 0 1122456666666677778
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 242 (348)
.+|.+.||||+.+.. +.+.--...||++|++||+..+..++.+...-....+ .-..+++++||+||.+-+
T Consensus 86 RkFIiADTPGHeQYT---------RNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL-GIrhvvvAVNKmDLvdy~ 155 (431)
T COG2895 86 RKFIIADTPGHEQYT---------RNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL-GIRHVVVAVNKMDLVDYS 155 (431)
T ss_pred ceEEEecCCcHHHHh---------hhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh-CCcEEEEEEeeecccccC
Confidence 899999999965532 2333345789999999999988866655443333332 235688999999998632
Q ss_pred --hHHHHH---HHHHhcCCC--CeEEEecCCCCCCHHH
Q 018949 243 --EIAKKL---EWYEKFTDV--DEVIPVSAKYGHGVED 273 (348)
Q Consensus 243 --~~~~~~---~~~~~~~~~--~~i~~vSA~~g~gi~e 273 (348)
..+.+. ..+...++. ..++|+||..|+|+-.
T Consensus 156 e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 156 EEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 222222 233333333 3689999999998853
No 291
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.34 E-value=1.5e-11 Score=110.65 Aligned_cols=186 Identities=18% Similarity=0.257 Sum_probs=110.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCC--CceEEeEEE-----------------------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKP--QTTRHRILG----------------------------- 156 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~--~~t~~~~~~----------------------------- 156 (348)
+..+|+|.|.||+|||||+.+|. |.++...+..| +.|.-.+.+
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 45589999999999999999985 33343322222 222111100
Q ss_pred --------EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchH--HHHHHHhcccccCC
Q 018949 157 --------ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI--DEILEEGVGDHKDK 226 (348)
Q Consensus 157 --------~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~--~~~~~~~~~~~~~~ 226 (348)
.++..++.+.++.|.|.+|..-. -..-+|.+++|.-...+..-+ ..-++ .
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev~------------I~~~aDt~~~v~~pg~GD~~Q~iK~Gim--------E 189 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEVD------------IANMADTFLVVMIPGAGDDLQGIKAGIM--------E 189 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchhH------------HhhhcceEEEEecCCCCcHHHHHHhhhh--------h
Confidence 02334578999999998774311 135788888887665444322 22222 2
Q ss_pred CCEEEEEeccCCCChhhH----HHHHHHHH----hcCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCc
Q 018949 227 LPILLVLNKKDLIKPGEI----AKKLEWYE----KFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHP 298 (348)
Q Consensus 227 ~p~ivv~NK~Dl~~~~~~----~~~~~~~~----~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~ 298 (348)
+--|+|+||.|....... ...+.... ...-..|++.+||.+|+|+++|++.|.+...........+......
T Consensus 190 iaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg~~~~~rr~q 269 (323)
T COG1703 190 IADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESGLFTEKRRTQ 269 (323)
T ss_pred hhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhccccccchHHH
Confidence 334899999997654322 11222211 1222358999999999999999999987654322111111223334
Q ss_pred hHHHHHHHHHHHHHhhccCCC
Q 018949 299 ERFFVGEIIREKIFMQYRNEV 319 (348)
Q Consensus 299 ~~~~~~e~ire~~~~~~~~ei 319 (348)
.+.|+..++++.+...+....
T Consensus 270 ~~~~~~~~v~~~v~~~~~~~~ 290 (323)
T COG1703 270 YVEWIRTLVRDEVLDRLEANP 290 (323)
T ss_pred HHHHHHHHHHHHHHHHHHcch
Confidence 455667777777777666554
No 292
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.34 E-value=3.2e-12 Score=109.00 Aligned_cols=119 Identities=27% Similarity=0.359 Sum_probs=66.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
...|.|+|++|+|||+|...|...+... +. |......... ...+..+.++|+||+.. ++..+.... .+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~-T~---tS~e~n~~~~~~~~~~~~~~lvD~PGH~r-----lr~~~~~~~-~~ 72 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVP-TV---TSMENNIAYNVNNSKGKKLRLVDIPGHPR-----LRSKLLDEL-KY 72 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS----B------SSEEEECCGSSTCGTCECEEEETT-HC-----CCHHHHHHH-HH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCC-ee---ccccCCceEEeecCCCCEEEEEECCCcHH-----HHHHHHHhh-hc
Confidence 4479999999999999999999874321 11 1111111111 12456799999999532 222232221 24
Q ss_pred ccCccEEEEEecCCCCC---chHHHHHHHhccc---ccCCCCEEEEEeccCCCChhh
Q 018949 193 GINADCIVVLVDACKAP---ERIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGE 243 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~---~~~~~~~~~~~~~---~~~~~p~ivv~NK~Dl~~~~~ 243 (348)
...+.+||||+|++... ....+.+...+.. .....|++|++||.|+.....
T Consensus 73 ~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 73 LSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp HGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred hhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 67899999999997422 2222233332221 126789999999999986543
No 293
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.34 E-value=9.8e-12 Score=100.67 Aligned_cols=170 Identities=21% Similarity=0.272 Sum_probs=112.9
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
.-..+|+++|.+..|||||+-.+.+..... .....|..-......+......+.+||..| +..+ .....-
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG--~~~~-------~n~lPi 88 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGG--QREF-------INMLPI 88 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCC--cHhh-------hccCce
Confidence 355699999999999999999999876531 111222211111222334456799999999 4322 233444
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCC---Chhh---HHHHHHHHHhcCCCCeEEEe
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLI---KPGE---IAKKLEWYEKFTDVDEVIPV 263 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~---~~~~---~~~~~~~~~~~~~~~~i~~v 263 (348)
+..++-+++|++|.++.. ....+|+.+........+| |+|++|.|+. +++. +..+...+.+... .+.++|
T Consensus 89 ac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mn-AsL~F~ 166 (205)
T KOG1673|consen 89 ACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMN-ASLFFC 166 (205)
T ss_pred eecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhC-CcEEEe
Confidence 567889999999998765 4455555554444334456 6789999974 2222 2223333444444 378999
Q ss_pred cCCCCCCHHHHHHHHHHhCCCCCCCCCCcc
Q 018949 264 SAKYGHGVEDIRDWILTKLPLGPAYYPKDI 293 (348)
Q Consensus 264 SA~~g~gi~eL~~~i~~~l~~~~~~~~~~~ 293 (348)
|+....|++.+|+.+...+...+|..|+..
T Consensus 167 Sts~sINv~KIFK~vlAklFnL~~ti~~~~ 196 (205)
T KOG1673|consen 167 STSHSINVQKIFKIVLAKLFNLPWTIPEIL 196 (205)
T ss_pred eccccccHHHHHHHHHHHHhCCceeccccc
Confidence 999999999999999999999888776553
No 294
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.33 E-value=5.8e-12 Score=110.06 Aligned_cols=158 Identities=23% Similarity=0.315 Sum_probs=112.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
.+|+++|.|+||||||+..+.+.+-. ...+..||...+.+++.+++..++++|.||+++.....-.+ .+++....+.
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGR--GRQviavArt 139 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGR--GRQVIAVART 139 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchhh-hhceeeeEEEeecceEEecCceEEEecCcccccccccCCCC--CceEEEEeec
Confidence 38999999999999999999987654 46788999999999999999999999999998754322111 1334455688
Q ss_pred ccEEEEEecCCCCCch---HHH----------------------------------------HHHHh-------------
Q 018949 196 ADCIVVLVDACKAPER---IDE----------------------------------------ILEEG------------- 219 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~---~~~----------------------------------------~~~~~------------- 219 (348)
||++++|+|++.+... ... .+...
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 9999999999865311 011 00001
Q ss_pred ------------cccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 220 ------------VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 220 ------------~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
+.....-++++-|.||+|...-+++.... +. +..+.+|+...-|++.|++.|.+.+.
T Consensus 220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevdrlA----r~---PnsvViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVDRLA----RQ---PNSVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred ecCCChHHHHHHHhccceEEEEEEEeeccceecHHHHHHHh----cC---CCcEEEEeccccCHHHHHHHHHHHhc
Confidence 10111225678889999988766554432 22 24578899999999999999998763
No 295
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=2.2e-11 Score=104.07 Aligned_cols=116 Identities=25% Similarity=0.326 Sum_probs=76.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
..|.++|..++|||+|.-.|..... ....+......+.+..+.....++|.||+.. ++..+.+... .-..
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~----~~TvtSiepn~a~~r~gs~~~~LVD~PGH~r-----lR~kl~e~~~-~~~~ 108 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSH----RGTVTSIEPNEATYRLGSENVTLVDLPGHSR-----LRRKLLEYLK-HNYS 108 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCc----cCeeeeeccceeeEeecCcceEEEeCCCcHH-----HHHHHHHHcc-cccc
Confidence 4799999999999999999887632 2333444555566666666689999999532 2222222221 1137
Q ss_pred ccEEEEEecCCCCC---chHHHHHHHhcccc---cCCCCEEEEEeccCCCCh
Q 018949 196 ADCIVVLVDACKAP---ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 196 ad~iv~VvD~~~~~---~~~~~~~~~~~~~~---~~~~p~ivv~NK~Dl~~~ 241 (348)
+-++|||||+..-. ....+.+...+-.. ....|+++++||.|+..+
T Consensus 109 akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 109 AKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred ceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 89999999997543 33333444433221 367899999999999754
No 296
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.33 E-value=2.3e-11 Score=108.19 Aligned_cols=162 Identities=13% Similarity=0.111 Sum_probs=93.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe-CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
||+++|+.++||||..+.+.++-.+..+...+.|.......+. .....+.+||+||....- .. .+.......++.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~-~~---~~~~~~~~if~~ 76 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFM-EN---YFNSQREEIFSN 76 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTT-HT---THTCCHHHHHCT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccc-cc---cccccHHHHHhc
Confidence 6999999999999999999987644334444555554444443 556799999999953211 11 111112233689
Q ss_pred ccEEEEEecCCC-CCchHHHHHHH---hcccccCCCCEEEEEeccCCCChhhHHHHH--------HHHHhcC-CCCeEEE
Q 018949 196 ADCIVVLVDACK-APERIDEILEE---GVGDHKDKLPILLVLNKKDLIKPGEIAKKL--------EWYEKFT-DVDEVIP 262 (348)
Q Consensus 196 ad~iv~VvD~~~-~~~~~~~~~~~---~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~--------~~~~~~~-~~~~i~~ 262 (348)
+.++|||+|+.. ........+.. .+....++..+.+.+.|+|+.......+.. ..+.... ....++.
T Consensus 77 v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (232)
T PF04670_consen 77 VGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL 156 (232)
T ss_dssp ESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred cCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence 999999999983 33332222222 222334889999999999998765433222 2222222 1246788
Q ss_pred ecCCCCCCHHHHHHHHHHhCC
Q 018949 263 VSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 263 vSA~~g~gi~eL~~~i~~~l~ 283 (348)
+|... +.+.+-+..|+..+-
T Consensus 157 TSI~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 157 TSIWD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp E-TTS-THHHHHHHHHHHTTS
T ss_pred ccCcC-cHHHHHHHHHHHHHc
Confidence 88887 478888888777654
No 297
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=5.2e-12 Score=103.47 Aligned_cols=154 Identities=22% Similarity=0.201 Sum_probs=100.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+++++|--|+|||||++.|-..+...-.++ .++....+...+..++.+|..|+.+. .+.+..++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPT----lHPTSE~l~Ig~m~ftt~DLGGH~qA---------rr~wkdyf 85 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPT----LHPTSEELSIGGMTFTTFDLGGHLQA---------RRVWKDYF 85 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCCC----cCCChHHheecCceEEEEccccHHHH---------HHHHHHHH
Confidence 566999999999999999999988776533333 33333345667788999999996442 24466778
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHH---HHHHHHhc------------C
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAK---KLEWYEKF------------T 255 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~---~~~~~~~~------------~ 255 (348)
..+|.+|+++|+.+.. .+....+...+... -.+.|+++.+||+|.+.+...++ ........ .
T Consensus 86 ~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~ 165 (193)
T KOG0077|consen 86 PQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNV 165 (193)
T ss_pred hhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCC
Confidence 9999999999997643 22222222111111 16799999999999986542221 11111111 1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHH
Q 018949 256 DVDEVIPVSAKYGHGVEDIRDWILT 280 (348)
Q Consensus 256 ~~~~i~~vSA~~g~gi~eL~~~i~~ 280 (348)
....++.||...+.|.-+-+.|+..
T Consensus 166 rp~evfmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 166 RPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred CeEEEEEEEEEccCccceeeeehhh
Confidence 1124688888888887766666544
No 298
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.32 E-value=4.8e-12 Score=130.75 Aligned_cols=115 Identities=21% Similarity=0.240 Sum_probs=79.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCcee---------eecCC------CCceEEeE----EEEEeCCCeeEEEEeCCCCch
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLS---------IVTNK------PQTTRHRI----LGICSGPEYQMILYDTPGIIE 175 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~---------~~~~~------~~~t~~~~----~~~~~~~~~~~~l~DtpG~~~ 175 (348)
..+|+++|+.++|||||+++|+..... ...+. .+.|.... ...+.+.+..+++|||||+.+
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 448999999999999999999742110 00111 12232221 112456778999999999754
Q ss_pred hhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
.. ..+..++..+|++|+|+|+..+.......++..... .+.|.++|+||+|...
T Consensus 99 f~---------~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 99 FG---------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred cH---------HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHH--cCCCEEEEEEChhccc
Confidence 21 234566789999999999998876666666655544 5788999999999864
No 299
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.31 E-value=3.1e-11 Score=112.40 Aligned_cols=104 Identities=20% Similarity=0.282 Sum_probs=65.5
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
.++.+.++||||..+... .....+|.++++.+...+ .+... +...+ .++|.++|+||+|+..
T Consensus 125 ~g~D~viidT~G~~~~e~------------~i~~~aD~i~vv~~~~~~-~el~~-~~~~l----~~~~~ivv~NK~Dl~~ 186 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSEV------------DIANMADTFVVVTIPGTG-DDLQG-IKAGL----MEIADIYVVNKADGEG 186 (300)
T ss_pred CCCCEEEEeCCCCchhhh------------HHHHhhceEEEEecCCcc-HHHHH-HHHHH----hhhccEEEEEcccccc
Confidence 367899999999764321 124578888888654322 12111 11111 4578899999999986
Q ss_pred hhhHHHHH-------HHHHhc-CCC-CeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 241 PGEIAKKL-------EWYEKF-TDV-DEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 241 ~~~~~~~~-------~~~~~~-~~~-~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
........ ..+... ... .+++++||++|.|+++|+++|.+..
T Consensus 187 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 187 ATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred hhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 54321111 111111 111 3689999999999999999998864
No 300
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.30 E-value=3.5e-11 Score=107.69 Aligned_cols=125 Identities=19% Similarity=0.215 Sum_probs=82.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE-------------------------------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG------------------------------------- 156 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~------------------------------------- 156 (348)
..+.|+++|+.|+||||+++++.|..+..... ...|+.+...
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~-g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCC-CcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 44589999999999999999999875321111 0111111000
Q ss_pred ---------------EEeCCCeeEEEEeCCCCchhh----hhhhHHHHHHHHHhhcc-CccEEEEEecCCCCCchHH-HH
Q 018949 157 ---------------ICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGI-NADCIVVLVDACKAPERID-EI 215 (348)
Q Consensus 157 ---------------~~~~~~~~~~l~DtpG~~~~~----~~~l~~~~~~~~~~~~~-~ad~iv~VvD~~~~~~~~~-~~ 215 (348)
+.......+.++||||+.... ...+...+.+.+..|++ ..+++++|+|++.+....+ ..
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 001112469999999996421 12344455566777888 4569999999987765544 45
Q ss_pred HHHhcccccCCCCEEEEEeccCCCCh
Q 018949 216 LEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 216 ~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
+.+.+.. .+.|+++|+||+|..+.
T Consensus 184 ia~~ld~--~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 184 LAKEVDP--QGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHH--cCCcEEEEEECCCCCCc
Confidence 6666655 67899999999999864
No 301
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.29 E-value=1.6e-11 Score=110.18 Aligned_cols=115 Identities=26% Similarity=0.269 Sum_probs=56.9
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhcc--CccEEEEEecCCCCCch---HHHHHHHhcccccCCCCEEEEEeccCC
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPER---IDEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~--~ad~iv~VvD~~~~~~~---~~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
.+.++||||..+ .-..+..+ ....+.+. ..-++|+++|+...... ....+....-....+.|.|.|+||+|+
T Consensus 92 ~y~l~DtPGQiE--lf~~~~~~-~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIE--LFTHSDSG-RKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHH--HHHHSHHH-HHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGG
T ss_pred cEEEEeCCCCEE--EEEechhH-HHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCc
Confidence 599999999544 22222222 12222233 35589999999744322 122222222122257999999999999
Q ss_pred CChh--hH------------------HHHHHHHHh---cCCCC-eEEEecCCCCCCHHHHHHHHHHh
Q 018949 239 IKPG--EI------------------AKKLEWYEK---FTDVD-EVIPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 239 ~~~~--~~------------------~~~~~~~~~---~~~~~-~i~~vSA~~g~gi~eL~~~i~~~ 281 (348)
.+.. .. ......+.. ..+.. +++++|+.+++|+.+|+..|-+.
T Consensus 169 ~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 169 LSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp S-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 8732 00 001111111 12333 78999999999999999988764
No 302
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.28 E-value=2.2e-11 Score=107.34 Aligned_cols=151 Identities=19% Similarity=0.259 Sum_probs=86.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC-----ceeeecCCCCceEEe---------EEEE-------------------EeC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHR---------ILGI-------------------CSG 160 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~-----~~~~~~~~~~~t~~~---------~~~~-------------------~~~ 160 (348)
..+.|+++|++|+|||||+++++.. +.......++...+. .... ...
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 4558999999999999999998743 112222222111100 0000 000
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
.+..+.+++|.|....+. .+....+..+.|+|+.+....... .... ...|.++++||+|+.+
T Consensus 101 ~~~d~IiIEt~G~l~~~~------------~~~~~~~~~i~Vvd~~~~d~~~~~----~~~~--~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCPA------------DFDLGEHMRVVLLSVTEGDDKPLK----YPGM--FKEADLIVINKADLAE 162 (207)
T ss_pred CCCCEEEEecCCCcCCCc------------ccccccCeEEEEEecCcccchhhh----hHhH--HhhCCEEEEEHHHccc
Confidence 123566777777211110 001123444567777654322111 1111 3467899999999975
Q ss_pred h--hhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 241 P--GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 241 ~--~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
. .........++......+++++||++|.|++++++++.+..
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 163 AVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred cchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3 22344444555555557899999999999999999998753
No 303
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.6e-11 Score=114.09 Aligned_cols=86 Identities=24% Similarity=0.317 Sum_probs=68.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC------------------CeeEEEEeCCCCchhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP------------------EYQMILYDTPGIIEKK 177 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------------~~~~~l~DtpG~~~~~ 177 (348)
.+++|||-||||||||.|+++... ....++|.+|.++..+++... ...+.++|.+|++...
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 479999999999999999999988 447899999999888774321 1358999999998654
Q ss_pred h--hhhHHHHHHHHHhhccCccEEEEEecCC
Q 018949 178 I--HMLDSMMMKNVRSAGINADCIVVLVDAC 206 (348)
Q Consensus 178 ~--~~l~~~~~~~~~~~~~~ad~iv~VvD~~ 206 (348)
. ..+.. .++..++.+|++++|||+.
T Consensus 82 s~GeGLGN----kFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGN----KFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcch----HHHHhhhhcCeEEEEEEec
Confidence 2 33444 4455679999999999986
No 304
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=3.1e-11 Score=122.44 Aligned_cols=118 Identities=23% Similarity=0.243 Sum_probs=90.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-----ec------------CCCCceEEeEEEEEeCCC-eeEEEEeCCCCch
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----VT------------NKPQTTRHRILGICSGPE-YQMILYDTPGIIE 175 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-----~~------------~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~ 175 (348)
+..+|+|+|+.++|||||..+|+.....+ +. ...+.|.......+.+++ +.++++||||+++
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 44489999999999999999987432211 11 111334444444556664 9999999999887
Q ss_pred hhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh
Q 018949 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (348)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 242 (348)
.. ..+.+.++-+|++|+|+|+..+.+.+.+.+++++.. .++|.++++||+|....+
T Consensus 89 Ft---------~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~--~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 89 FT---------IEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK--YGVPRILFVNKMDRLGAD 144 (697)
T ss_pred cH---------HHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh--cCCCeEEEEECccccccC
Confidence 54 345566789999999999999999999999888887 889999999999998654
No 305
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.1e-11 Score=103.71 Aligned_cols=160 Identities=19% Similarity=0.238 Sum_probs=108.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.+++++|..|.||||++++.+...+... .++.+...+.....-+.+..++..|||.| ++.+..++.. ++-
T Consensus 11 fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtag--qEk~gglrdg-------yyI 81 (216)
T KOG0096|consen 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAG--QEKKGGLRDG-------YYI 81 (216)
T ss_pred EEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeeccc--ceeecccccc-------cEE
Confidence 3799999999999999999988777632 22223333333333333458899999999 5554444332 245
Q ss_pred CccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 195 NADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
...++++++|.+... .....|...+.+.. .++|+++++||.|...+..-...+. +. ......++++||+++.|.+
T Consensus 82 ~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~~k~k~v~-~~-rkknl~y~~iSaksn~Nfe 158 (216)
T KOG0096|consen 82 QGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARKVKAKPVS-FH-RKKNLQYYEISAKSNYNFE 158 (216)
T ss_pred ecceeEEEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccccccccce-ee-ecccceeEEeecccccccc
Confidence 667888888887654 44455555555543 6799999999999876541111111 11 1123478999999999999
Q ss_pred HHHHHHHHhCCCCCC
Q 018949 273 DIRDWILTKLPLGPA 287 (348)
Q Consensus 273 eL~~~i~~~l~~~~~ 287 (348)
.-|.++.+.+.+.|.
T Consensus 159 kPFl~LarKl~G~p~ 173 (216)
T KOG0096|consen 159 RPFLWLARKLTGDPS 173 (216)
T ss_pred cchHHHhhhhcCCCC
Confidence 999999999876554
No 306
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.3e-10 Score=112.54 Aligned_cols=151 Identities=21% Similarity=0.216 Sum_probs=101.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCc------------------------eeeec------CCCCceEEeEEEEEeCCCe
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQK------------------------LSIVT------NKPQTTRHRILGICSGPEY 163 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~------------------------~~~~~------~~~~~t~~~~~~~~~~~~~ 163 (348)
.....+++|+.++|||||+..++..= ++++- ...|.|.+.....+.....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 34479999999999999999986210 11111 2224455555566677778
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-------chHHHHHHHhcccccCCCCEEEEEecc
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLPILLVLNKK 236 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-------~~~~~~~~~~~~~~~~~~p~ivv~NK~ 236 (348)
.++|+|+||+.+.. ..+......+|++++|+|++.+. ..+......+++.++ -..+||++||+
T Consensus 256 ~~tliDaPGhkdFi---------~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKm 325 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFI---------PNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKM 325 (603)
T ss_pred eEEEecCCCccccc---------hhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecc
Confidence 89999999965432 33445567999999999998643 334556666666642 35689999999
Q ss_pred CCCC--hhhHHHHHHHHHhcC----CC----CeEEEecCCCCCCHHHH
Q 018949 237 DLIK--PGEIAKKLEWYEKFT----DV----DEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 237 Dl~~--~~~~~~~~~~~~~~~----~~----~~i~~vSA~~g~gi~eL 274 (348)
|+++ .+..+++...+..++ ++ ..++|||+.+|+|+-..
T Consensus 326 D~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 326 DLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 9985 333344333333222 22 36899999999998653
No 307
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.20 E-value=2.2e-10 Score=113.59 Aligned_cols=126 Identities=18% Similarity=0.093 Sum_probs=79.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecC-CCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh-hhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH-MLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~-~l~~~~~~~~~~ 191 (348)
...+|+++|.+|+||||++|+|+|.+...+.. .++||.. ........+..+.++||||+.+.... .........+..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 34589999999999999999999987654444 3566654 33333345788999999999764222 122333344444
Q ss_pred hcc--CccEEEEEecCCCCCc-hHHHHHHHhccc-cc--CCCCEEEEEeccCCCC
Q 018949 192 AGI--NADCIVVLVDACKAPE-RIDEILEEGVGD-HK--DKLPILLVLNKKDLIK 240 (348)
Q Consensus 192 ~~~--~ad~iv~VvD~~~~~~-~~~~~~~~~~~~-~~--~~~p~ivv~NK~Dl~~ 240 (348)
++. .+|++|||...+.... ..+..+.+.+.. ++ --..+|||+|..|...
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 443 5899999987643222 122222222222 22 2356899999999875
No 308
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.20 E-value=5.6e-11 Score=105.54 Aligned_cols=167 Identities=22% Similarity=0.111 Sum_probs=109.4
Q ss_pred CCCCCCccEEEEEcCCCCChHHHHHHHhCCceee--ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCch-----hhhhhh
Q 018949 109 SHPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILGICSGPEYQMILYDTPGIIE-----KKIHML 181 (348)
Q Consensus 109 ~~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~-----~~~~~l 181 (348)
+.|..+.++++++|.+|||||||+|.++..+... ...+++.|+......+ +..+.++|.||+.. +.....
T Consensus 130 D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~ 206 (320)
T KOG2486|consen 130 DCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADW 206 (320)
T ss_pred cCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchH
Confidence 4555677899999999999999999998766432 2336666666544333 35699999999533 222222
Q ss_pred HHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh------HHHHHHHHHhc-
Q 018949 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------IAKKLEWYEKF- 254 (348)
Q Consensus 182 ~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~------~~~~~~~~~~~- 254 (348)
...- ..+...-+.--.+++++|++.+.+..+....+++.+ .++|+.+|+||||....-. .......+...
T Consensus 207 ~~~t-~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge--~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 207 DKFT-KSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE--NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred hHhH-HHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh--cCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 2211 111111234445778899998888888888888888 8999999999999864221 01111111111
Q ss_pred ----CCCCeEEEecCCCCCCHHHHHHHHHHh
Q 018949 255 ----TDVDEVIPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 255 ----~~~~~i~~vSA~~g~gi~eL~~~i~~~ 281 (348)
....|++.+|+.++.|++.|+-.|...
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhhh
Confidence 122367789999999999998777654
No 309
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.18 E-value=2.6e-10 Score=107.55 Aligned_cols=160 Identities=20% Similarity=0.144 Sum_probs=86.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc----eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK----LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
.+|+|+|.+|+|||||||+|.|-. .+..+....||....... ..+-..+.+||.||.+...+ .....+ +.+
T Consensus 36 l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~-~p~~pnv~lWDlPG~gt~~f-~~~~Yl-~~~-- 110 (376)
T PF05049_consen 36 LNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP-HPKFPNVTLWDLPGIGTPNF-PPEEYL-KEV-- 110 (376)
T ss_dssp EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS---HHHHH-HHT--
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC-CCCCCCCeEEeCCCCCCCCC-CHHHHH-HHc--
Confidence 379999999999999999998722 111111112333322222 22334599999999754332 222222 221
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC------------Chhh-HHHH----HHHHHhc
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI------------KPGE-IAKK----LEWYEKF 254 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~------------~~~~-~~~~----~~~~~~~ 254 (348)
.+...|.+|++.+. .....+.++...++. .++|+++|-||+|.. +... ++++ ...+...
T Consensus 111 ~~~~yD~fiii~s~--rf~~ndv~La~~i~~--~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 111 KFYRYDFFIIISSE--RFTENDVQLAKEIQR--MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp TGGG-SEEEEEESS--S--HHHHHHHHHHHH--TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred cccccCEEEEEeCC--CCchhhHHHHHHHHH--cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 36788987776654 455666677777777 789999999999961 0111 1111 2222222
Q ss_pred C-CCCeEEEecCCCC--CCHHHHHHHHHHhCCC
Q 018949 255 T-DVDEVIPVSAKYG--HGVEDIRDWILTKLPL 284 (348)
Q Consensus 255 ~-~~~~i~~vSA~~g--~gi~eL~~~i~~~l~~ 284 (348)
. ...++|.+|...- .....|.+.+.+.++.
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA 219 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence 2 3347899998764 5688899999988865
No 310
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=3.6e-10 Score=101.08 Aligned_cols=158 Identities=19% Similarity=0.183 Sum_probs=106.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC-------ce--------eeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ-------KL--------SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~-------~~--------~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 180 (348)
.+|+.+|+.+.|||||..++... .. ++.....+.|.......+......+-.+||||+.+
T Consensus 13 VNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD----- 87 (394)
T COG0050 13 VNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD----- 87 (394)
T ss_pred eEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH-----
Confidence 48999999999999999997531 10 11122235666666666777788899999999644
Q ss_pred hHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhhHHHH----HHHHHhcC
Q 018949 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGEIAKK----LEWYEKFT 255 (348)
Q Consensus 181 l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~~~~~----~~~~~~~~ 255 (348)
+.+.+.-...+.|..|+|+.+++++..+.....-+.+. -+.| +++++||+|+.+..++.+. ...+-..+
T Consensus 88 ----YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarq--vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y 161 (394)
T COG0050 88 ----YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ--VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred ----HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhh--cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHc
Confidence 22333344568899999999999987776666655555 6776 5678999999985544222 12222222
Q ss_pred ----CCCeEEEecCCCC--------CCHHHHHHHHHHhCCC
Q 018949 256 ----DVDEVIPVSAKYG--------HGVEDIRDWILTKLPL 284 (348)
Q Consensus 256 ----~~~~i~~vSA~~g--------~gi~eL~~~i~~~l~~ 284 (348)
...|++.-||... ..+.+|++++-+.++.
T Consensus 162 ~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 162 GFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred CCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence 3347777777653 2367888888887764
No 311
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.16 E-value=7e-10 Score=94.23 Aligned_cols=79 Identities=20% Similarity=0.225 Sum_probs=56.1
Q ss_pred EEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh--hhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 198 CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 198 ~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
.-|+|+|.+.+...-.+ ....+ -..-++|+||.|+.+. .+++.+....++..+..|++++|+++|+|+++++
T Consensus 120 ~~v~VidvteGe~~P~K-~gP~i-----~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~ 193 (202)
T COG0378 120 LRVVVIDVTEGEDIPRK-GGPGI-----FKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWL 193 (202)
T ss_pred eEEEEEECCCCCCCccc-CCCce-----eEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHH
Confidence 66778887766533111 00000 0134899999999864 3457777788888888899999999999999999
Q ss_pred HHHHHhC
Q 018949 276 DWILTKL 282 (348)
Q Consensus 276 ~~i~~~l 282 (348)
+++....
T Consensus 194 ~~i~~~~ 200 (202)
T COG0378 194 RFIEPQA 200 (202)
T ss_pred HHHHhhc
Confidence 9987643
No 312
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.15 E-value=2.4e-10 Score=99.96 Aligned_cols=81 Identities=22% Similarity=0.236 Sum_probs=56.5
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh--hhHHHHHHHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP--GEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
+|.+|.|+|+.+....... .... -...-++++||+|+.+. .++....+.++...+..+++++||++|+|+++
T Consensus 113 ~~~~i~vvD~~~~~~~~~~-~~~q-----i~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~e 186 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPRK-GGPG-----ITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDT 186 (199)
T ss_pred hCcEEEEEEcchhhhhhhh-hHhH-----hhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHH
Confidence 5779999999865542211 1111 11223899999999852 34444555566555667899999999999999
Q ss_pred HHHHHHHhC
Q 018949 274 IRDWILTKL 282 (348)
Q Consensus 274 L~~~i~~~l 282 (348)
++++|.+.+
T Consensus 187 l~~~i~~~~ 195 (199)
T TIGR00101 187 VIDWIEHYA 195 (199)
T ss_pred HHHHHHhhc
Confidence 999998765
No 313
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.15 E-value=6.6e-10 Score=102.13 Aligned_cols=134 Identities=13% Similarity=0.207 Sum_probs=77.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecC--------CCCc-eEEeEEEEEeCC--CeeEEEEeCCCCchhh-----hhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTN--------KPQT-TRHRILGICSGP--EYQMILYDTPGIIEKK-----IHM 180 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~--------~~~~-t~~~~~~~~~~~--~~~~~l~DtpG~~~~~-----~~~ 180 (348)
+|+++|.+|+|||||+|.|++........ ...+ +.......+..+ ...+.++||||+++.- +..
T Consensus 6 nImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~~ 85 (281)
T PF00735_consen 6 NIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWEP 85 (281)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhHH
Confidence 79999999999999999999876543320 1111 111112222222 3578999999987521 112
Q ss_pred hHHHHHHHHHhhc-------------cCccEEEEEecCCC-CCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH
Q 018949 181 LDSMMMKNVRSAG-------------INADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (348)
Q Consensus 181 l~~~~~~~~~~~~-------------~~ad~iv~VvD~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~ 246 (348)
+..........++ .+.|+|+|+++++. +....+...++.+. ..+++|-|+.|+|.....++..
T Consensus 86 I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls---~~vNvIPvIaKaD~lt~~el~~ 162 (281)
T PF00735_consen 86 IVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS---KRVNVIPVIAKADTLTPEELQA 162 (281)
T ss_dssp HHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT---TTSEEEEEESTGGGS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc---ccccEEeEEecccccCHHHHHH
Confidence 2222211111111 35699999999864 55666665555554 4689999999999999888766
Q ss_pred HHHHHHh
Q 018949 247 KLEWYEK 253 (348)
Q Consensus 247 ~~~~~~~ 253 (348)
....+..
T Consensus 163 ~k~~i~~ 169 (281)
T PF00735_consen 163 FKQRIRE 169 (281)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 314
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.13 E-value=1.2e-10 Score=102.35 Aligned_cols=157 Identities=25% Similarity=0.303 Sum_probs=112.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.|++||||++..+.|..- .+..+.++|-..+.+...+++..+.+.|.||+.+...+.-.+ ..++....+.|
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgr--g~qviavartc 137 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGR--GKQVIAVARTC 137 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccccceeeecCcchhcccccCCCC--ccEEEEEeecc
Confidence 899999999999999999998654 367888999999999999999999999999998754332211 12333446789
Q ss_pred cEEEEEecCCCCCchH--H----------------------------------------HHHHHh---------------
Q 018949 197 DCIVVLVDACKAPERI--D----------------------------------------EILEEG--------------- 219 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~--~----------------------------------------~~~~~~--------------- 219 (348)
.++++|+|+..+...- . ..+...
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT 217 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT 217 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence 9999999987553110 0 000000
Q ss_pred -------cccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 220 -------VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 220 -------~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
+.....-+|.+.++||+|...-++++- .......+++||.++.|+++|++.+.+.+.
T Consensus 218 ~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdi-------i~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 218 ADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDI-------IYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred hhhhhhhhccCceeeeeeeeecccceeeeeccce-------eeeccceeecccccccchHHHHHHHhhcch
Confidence 000012468899999999876554322 122346799999999999999999998764
No 315
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.13 E-value=1.5e-10 Score=105.66 Aligned_cols=55 Identities=27% Similarity=0.432 Sum_probs=46.3
Q ss_pred CCEEEEEeccCCCC--hhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHh
Q 018949 227 LPILLVLNKKDLIK--PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 227 ~p~ivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~ 281 (348)
.+-++|+||+|+.+ ..+++.....++...+..+++++||++|+|+++|.++|.++
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 56699999999986 34566777777777777899999999999999999999864
No 316
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.06 E-value=1.9e-11 Score=102.02 Aligned_cols=157 Identities=17% Similarity=0.240 Sum_probs=109.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC---eeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE---YQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
++.|+|+.++|||+++.+.+...+.. .-......+....++.++. +++.|||..| ++.+..+ ..-++
T Consensus 27 k~lVig~~~vgkts~i~ryv~~nfs~-~yRAtIgvdfalkVl~wdd~t~vRlqLwdIag--Qerfg~m-------trVyy 96 (229)
T KOG4423|consen 27 KVLVIGDLGVGKTSSIKRYVHQNFSY-HYRATIGVDFALKVLQWDDKTIVRLQLWDIAG--QERFGNM-------TRVYY 96 (229)
T ss_pred hhheeeeccccchhHHHHHHHHHHHH-HHHHHHhHHHHHHHhccChHHHHHHHHhcchh--hhhhcce-------EEEEe
Confidence 79999999999999999988665532 1111111122222333332 4688999999 5554443 44568
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc----cCCCCEEEEEeccCCCChhhH--HHHHHHHHhcCCCCeEEEecC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~----~~~~p~ivv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSA 265 (348)
+.+.+.++|+|.+++. +....|...+.... +...|+++..||||....... ......+.+..++..++++|+
T Consensus 97 kea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~ 176 (229)
T KOG4423|consen 97 KEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSA 176 (229)
T ss_pred cCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecc
Confidence 9999999999998765 33344444433321 355788999999998754333 356677778888889999999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 018949 266 KYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (348)
+.+.|++|.-..+++++.
T Consensus 177 Kenkni~Ea~r~lVe~~l 194 (229)
T KOG4423|consen 177 KENKNIPEAQRELVEKIL 194 (229)
T ss_pred ccccChhHHHHHHHHHHH
Confidence 999999999888887664
No 317
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.04 E-value=5.7e-10 Score=93.86 Aligned_cols=56 Identities=30% Similarity=0.416 Sum_probs=46.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 173 (348)
..+|+++|.||||||||+|+|.+.+...++..+++|+........ ..+.++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLM---KRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcC---CCEEEEECcCC
Confidence 447999999999999999999999988899999999886543322 34899999994
No 318
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=6.6e-10 Score=107.92 Aligned_cols=117 Identities=22% Similarity=0.262 Sum_probs=88.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-----e------------cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----V------------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-----~------------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+...|+|.-+-.+||||+-++++.....+ + ....+.|....-..+.+...+++++||||+++.
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 33479999999999999999987432111 1 111233444444446677899999999998876
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
.+. +.++++-.|++|+|+|+..+.+.+...++++.+. .++|.|..+||+|.+..
T Consensus 118 T~E---------VeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r--y~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 118 TFE---------VERALRVLDGAVLVLDAVAGVESQTETVWRQMKR--YNVPRICFINKMDRMGA 171 (721)
T ss_pred EEE---------ehhhhhhccCeEEEEEcccceehhhHHHHHHHHh--cCCCeEEEEehhhhcCC
Confidence 544 3344778899999999999999998888888877 89999999999998654
No 319
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.03 E-value=5.7e-10 Score=95.27 Aligned_cols=56 Identities=36% Similarity=0.421 Sum_probs=48.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 173 (348)
..+|+++|.||+|||||+|++.+.+...+++.|++|+......+. ..+.++||||+
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~---~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD---KKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC---CCEEEEECcCC
Confidence 358999999999999999999999988899999999987665543 35899999994
No 320
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.02 E-value=2.4e-09 Score=99.04 Aligned_cols=159 Identities=18% Similarity=0.198 Sum_probs=101.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee--------e-----cCCCCceEEeEEEE-----------------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--------V-----TNKPQTTRHRILGI----------------------- 157 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~--------~-----~~~~~~t~~~~~~~----------------------- 157 (348)
....|+.+|+.++|||||+-+|...+..- . ....+.|......+
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~v 195 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAV 195 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHh
Confidence 44589999999999999999886432210 0 00011111111111
Q ss_pred EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccC
Q 018949 158 CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 158 ~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~D 237 (348)
+...+.-+.++||.|+...-...++..+ -...|..++++-+.++.+...+..+...-. ...|+|+|+||+|
T Consensus 196 v~~aDklVsfVDtvGHEpwLrTtirGL~-------gqk~dYglLvVaAddG~~~~tkEHLgi~~a--~~lPviVvvTK~D 266 (527)
T COG5258 196 VKRADKLVSFVDTVGHEPWLRTTIRGLL-------GQKVDYGLLVVAADDGVTKMTKEHLGIALA--MELPVIVVVTKID 266 (527)
T ss_pred hhhcccEEEEEecCCccHHHHHHHHHHh-------ccccceEEEEEEccCCcchhhhHhhhhhhh--hcCCEEEEEEecc
Confidence 1111234889999995321111121111 357899999999999998888877776666 7899999999999
Q ss_pred CCChhhHHHHHHHHHh---------------------------cCCCCeEEEecCCCCCCHHHHHHHHHHh
Q 018949 238 LIKPGEIAKKLEWYEK---------------------------FTDVDEVIPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 238 l~~~~~~~~~~~~~~~---------------------------~~~~~~i~~vSA~~g~gi~eL~~~i~~~ 281 (348)
+.+.+.+....+.+.. ..+..|+|.+|+.+|+|++-|.+.+..+
T Consensus 267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~L 337 (527)
T COG5258 267 MVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLL 337 (527)
T ss_pred cCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhC
Confidence 9876544333322221 1124589999999999998776665543
No 321
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=3.4e-09 Score=97.52 Aligned_cols=131 Identities=21% Similarity=0.302 Sum_probs=85.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--------------------------------
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-------------------------------- 162 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-------------------------------- 162 (348)
.+.|.++|+-+.||||+|+.|+...+......|..|.+....++.++.
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 347999999999999999999988765322222222222222211110
Q ss_pred ---------eeEEEEeCCCCchhhhhhhHHH--HHHHHHhhccCccEEEEEecCCCCC-chHHHHHHHhcccccCCCCEE
Q 018949 163 ---------YQMILYDTPGIIEKKIHMLDSM--MMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPIL 230 (348)
Q Consensus 163 ---------~~~~l~DtpG~~~~~~~~l~~~--~~~~~~~~~~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~~~~p~i 230 (348)
..+.++||||+.......+.+. +.........+||.|++++|+..-. ......+...++. ..-.+-
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG--~EdkiR 215 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG--HEDKIR 215 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC--CcceeE
Confidence 1489999999876433322221 3333444578999999999996533 4445556666665 566788
Q ss_pred EEEeccCCCChhhHHHH
Q 018949 231 LVLNKKDLIKPGEIAKK 247 (348)
Q Consensus 231 vv~NK~Dl~~~~~~~~~ 247 (348)
||+||.|.++..++-+.
T Consensus 216 VVLNKADqVdtqqLmRV 232 (532)
T KOG1954|consen 216 VVLNKADQVDTQQLMRV 232 (532)
T ss_pred EEeccccccCHHHHHHH
Confidence 99999999988776443
No 322
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.00 E-value=1.6e-09 Score=91.17 Aligned_cols=92 Identities=17% Similarity=0.103 Sum_probs=68.3
Q ss_pred HhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 190 ~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+..+|++++|+|++.+.......+...+.....++|+++|+||+|+.+..........+...... .++++||+.+.
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~-~~~~iSa~~~~ 81 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPT-IAFHASINNPF 81 (157)
T ss_pred hHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcE-EEEEeeccccc
Confidence 45578999999999998876444455555554433458999999999998766555555555544332 36889999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++|++.+.+.+
T Consensus 82 ~~~~L~~~l~~~~ 94 (157)
T cd01858 82 GKGSLIQLLRQFS 94 (157)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999998764
No 323
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.97 E-value=3.4e-09 Score=88.99 Aligned_cols=92 Identities=26% Similarity=0.186 Sum_probs=65.1
Q ss_pred HHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCC
Q 018949 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
......++|++++|+|++++.......+...+.. .++|+++|+||+|+.+........ .+....+ .+++++||++|
T Consensus 6 ~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~-~~~~~~~-~~~~~iSa~~~ 81 (156)
T cd01859 6 VRRIIKESDVVLEVLDARDPELTRSRKLERYVLE--LGKKLLIVLNKADLVPKEVLEKWK-SIKESEG-IPVVYVSAKER 81 (156)
T ss_pred HHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHH-HHHHhCC-CcEEEEEcccc
Confidence 3344567999999999987654444444444443 568999999999997644333222 2222222 47899999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 018949 269 HGVEDIRDWILTKLPL 284 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (348)
.|+++|++.+.+.++.
T Consensus 82 ~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 82 LGTKILRRTIKELAKI 97 (156)
T ss_pred ccHHHHHHHHHHHHhh
Confidence 9999999999988764
No 324
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.94 E-value=1.5e-09 Score=101.72 Aligned_cols=61 Identities=43% Similarity=0.600 Sum_probs=53.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 177 (348)
+..+|+++|.||||||||||+|.+.+.+.+++.||+|+..+...+... +.|+||||+....
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii~~~ 191 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGIIPPK 191 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCcCCCC
Confidence 345899999999999999999999999889999999999887666544 8999999987543
No 325
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=5.1e-09 Score=102.56 Aligned_cols=119 Identities=22% Similarity=0.309 Sum_probs=81.6
Q ss_pred CCCCCccEEEEEcCCCCChHHHHHHHhCCceeee---c----CCC---------CceEEe--EEEE---EeCCCeeEEEE
Q 018949 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIV---T----NKP---------QTTRHR--ILGI---CSGPEYQMILY 168 (348)
Q Consensus 110 ~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~---~----~~~---------~~t~~~--~~~~---~~~~~~~~~l~ 168 (348)
..+.+...|+++|+-.+|||+|+..|........ . .++ +.+... .... ...+.+-++++
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 3444556899999999999999999986542110 0 000 111111 1111 22345678999
Q ss_pred eCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 169 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 169 DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
||||+++. ..++...++.+|++++|+|+..+..-..+.+.+..-. .+.|+++|+||+|+.
T Consensus 203 DTPGHVnF---------~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq--~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 203 DTPGHVNF---------SDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ--NRLPIVVVINKVDRL 262 (971)
T ss_pred cCCCcccc---------hHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh--ccCcEEEEEehhHHH
Confidence 99997653 3445566789999999999999886666666665555 689999999999964
No 326
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.89 E-value=3.8e-09 Score=87.23 Aligned_cols=55 Identities=35% Similarity=0.594 Sum_probs=46.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGII 174 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~ 174 (348)
+++++|.+|+|||||+|++++.....++..+++|++.....++. .+.+|||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCcC
Confidence 79999999999999999999998877888899998876544432 58999999974
No 327
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=5.3e-09 Score=94.06 Aligned_cols=114 Identities=21% Similarity=0.333 Sum_probs=79.4
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-chHHHHHHHhcccccCCCCEEEEEeccCCCChh
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 242 (348)
.+.++||||+ ..++..++....-.|++++++-+..+. +.+....+....-. .=+.++++-||+|+....
T Consensus 126 HVSfVDCPGH---------DiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM-~LkhiiilQNKiDli~e~ 195 (466)
T KOG0466|consen 126 HVSFVDCPGH---------DILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM-KLKHIIILQNKIDLIKES 195 (466)
T ss_pred EEEeccCCch---------HHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh-hhceEEEEechhhhhhHH
Confidence 4789999994 234555555556778899999887654 33333322222111 235789999999999877
Q ss_pred hHHHHHHHHHhcC-----CCCeEEEecCCCCCCHHHHHHHHHHhCCCCCC
Q 018949 243 EIAKKLEWYEKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPA 287 (348)
Q Consensus 243 ~~~~~~~~~~~~~-----~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~ 287 (348)
+..+..+++..+. ...|++|+||.-+.|++-+.++|.+.++-.+.
T Consensus 196 ~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR 245 (466)
T KOG0466|consen 196 QALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR 245 (466)
T ss_pred HHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence 6555555555433 33599999999999999999999999986544
No 328
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1.3e-08 Score=101.30 Aligned_cols=113 Identities=23% Similarity=0.258 Sum_probs=81.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE-------E------E--EeCCCeeEEEEeCCCCchhhhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL-------G------I--CSGPEYQMILYDTPGIIEKKIH 179 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~-------~------~--~~~~~~~~~l~DtpG~~~~~~~ 179 (348)
...|+++.+...|||||...|+..+..+.+.-.|+-+..-. + . .-.+++.++++|+||+++..
T Consensus 9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~-- 86 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS-- 86 (887)
T ss_pred eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh--
Confidence 34799999999999999999987665544444444332110 0 1 12367889999999987744
Q ss_pred hhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCC
Q 018949 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 180 ~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
..+..+..-||++++++|+..+.-.+...+.+.... .+...++|+||+|.
T Consensus 87 -------sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~--~~~~~~lvinkidr 136 (887)
T KOG0467|consen 87 -------SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI--EGLKPILVINKIDR 136 (887)
T ss_pred -------hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH--ccCceEEEEehhhh
Confidence 234455688999999999999987777776664444 56778999999994
No 329
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.86 E-value=1.2e-08 Score=88.56 Aligned_cols=96 Identities=24% Similarity=0.271 Sum_probs=65.0
Q ss_pred HHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHH------Hhc-CCC
Q 018949 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWY------EKF-TDV 257 (348)
Q Consensus 185 ~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~------~~~-~~~ 257 (348)
+...+..+++.+|++++|+|+++........+.. .. .++|+++|+||+|+.+..........+ ... ...
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~--~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FG--GNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKP 99 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hc--CCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCc
Confidence 3455667789999999999998765333333311 12 568999999999997543211111111 111 122
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 258 DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 258 ~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
.+++++||++|.|+++|++.|.+.++.
T Consensus 100 ~~i~~vSA~~~~gi~eL~~~l~~~l~~ 126 (190)
T cd01855 100 KDVILISAKKGWGVEELINAIKKLAKK 126 (190)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 368999999999999999999998753
No 330
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.85 E-value=8.4e-08 Score=88.95 Aligned_cols=136 Identities=15% Similarity=0.192 Sum_probs=85.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeec----CC-----CCceEEeEEEEEeCCC--eeEEEEeCCCCchh-----hh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVT----NK-----PQTTRHRILGICSGPE--YQMILYDTPGIIEK-----KI 178 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~----~~-----~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~-----~~ 178 (348)
..+|+++|+.|.|||||+|.|++....... .. +..........+..++ ..++++||||+++. .+
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~w 102 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCW 102 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccH
Confidence 348999999999999999999987432110 11 1111222223333333 56899999999873 22
Q ss_pred hhhHHHHHHHHHhhc--------------cCccEEEEEecCC-CCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh
Q 018949 179 HMLDSMMMKNVRSAG--------------INADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (348)
Q Consensus 179 ~~l~~~~~~~~~~~~--------------~~ad~iv~VvD~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~ 243 (348)
..+-.....+...++ .+.++|+|.+-.+ ++....+-..+..+. ..+.+|=|+-|+|.....+
T Consensus 103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls---~~vNlIPVI~KaD~lT~~E 179 (373)
T COG5019 103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLS---KRVNLIPVIAKADTLTDDE 179 (373)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHh---cccCeeeeeeccccCCHHH
Confidence 222222222222221 2579999999876 455666655554443 4688899999999999888
Q ss_pred HHHHHHHHHh
Q 018949 244 IAKKLEWYEK 253 (348)
Q Consensus 244 ~~~~~~~~~~ 253 (348)
+......+..
T Consensus 180 l~~~K~~I~~ 189 (373)
T COG5019 180 LAEFKERIRE 189 (373)
T ss_pred HHHHHHHHHH
Confidence 7666555544
No 331
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.84 E-value=6.1e-09 Score=98.27 Aligned_cols=90 Identities=21% Similarity=0.169 Sum_probs=69.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCchhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI 178 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~ 178 (348)
.+++|+|.||+|||||.|++.+.....+..+|.||..+..+++...+ ..+.++|.||+.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 37999999999999999999999873468889999988887766443 3589999999976432
Q ss_pred hhhHHHHHHHHHhhccCccEEEEEecCCC
Q 018949 179 HMLDSMMMKNVRSAGINADCIVVLVDACK 207 (348)
Q Consensus 179 ~~l~~~~~~~~~~~~~~ad~iv~VvD~~~ 207 (348)
.. ..+...++..++.+|++++|+|+..
T Consensus 83 ~g--~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KG--EGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cc--cCcchHHHHHHHhCCEEEEEEeCCC
Confidence 21 1122345566799999999999853
No 332
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=5.8e-08 Score=88.70 Aligned_cols=159 Identities=21% Similarity=0.203 Sum_probs=104.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC-------Ccee--------eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG-------QKLS--------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~-------~~~~--------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (348)
..+|+-+|+...|||||..++.. .++. +.....+.|.......+......+--+||||+.+
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD---- 129 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD---- 129 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH----
Confidence 34899999999999999998752 1111 1122335566655555666667788999999644
Q ss_pred hhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCC-CEEEEEeccCCCChhhHH--------HHHHH
Q 018949 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-PILLVLNKKDLIKPGEIA--------KKLEW 250 (348)
Q Consensus 180 ~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~NK~Dl~~~~~~~--------~~~~~ 250 (348)
+.....--..+.|++|+||.++++...+.+..+-+.+. -++ .+++.+||.|+++..+.. +.+..
T Consensus 130 -----YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQ--VGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse 202 (449)
T KOG0460|consen 130 -----YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQ--VGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSE 202 (449)
T ss_pred -----HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHH--cCCceEEEEEecccccCCHHHHHHHHHHHHHHHHH
Confidence 23344444578899999999999998887777766666 344 467889999999554332 22222
Q ss_pred HHhcCCCCeEEEecCCC---CC-------CHHHHHHHHHHhCCC
Q 018949 251 YEKFTDVDEVIPVSAKY---GH-------GVEDIRDWILTKLPL 284 (348)
Q Consensus 251 ~~~~~~~~~i~~vSA~~---g~-------gi~eL~~~i~~~l~~ 284 (348)
+.-.....|++.-||+. |. .|.+|++.+-+.++.
T Consensus 203 ~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~ 246 (449)
T KOG0460|consen 203 FGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPT 246 (449)
T ss_pred cCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCC
Confidence 22233456888877654 31 256666666665653
No 333
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.6e-08 Score=94.41 Aligned_cols=134 Identities=17% Similarity=0.171 Sum_probs=96.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-----------------ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-----------------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+-..|+|+.+..+||||...+++.-...+ .....+.|....-..++++|.+++++||||+++.
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 44489999999999999999986322111 1222345566666678899999999999998775
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCC
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (348)
... +.+.++-.|++|.|+|++.+.+.+.-.+++...+ .++|.+..+||+|..... .+.....+....+
T Consensus 116 ~le---------verclrvldgavav~dasagve~qtltvwrqadk--~~ip~~~finkmdk~~an-fe~avdsi~ekl~ 183 (753)
T KOG0464|consen 116 RLE---------VERCLRVLDGAVAVFDASAGVEAQTLTVWRQADK--FKIPAHCFINKMDKLAAN-FENAVDSIEEKLG 183 (753)
T ss_pred EEE---------HHHHHHHhcCeEEEEeccCCcccceeeeehhccc--cCCchhhhhhhhhhhhhh-hhhHHHHHHHHhC
Confidence 422 3344667799999999999988777666666655 689999999999987543 3444455555555
Q ss_pred CCe
Q 018949 257 VDE 259 (348)
Q Consensus 257 ~~~ 259 (348)
..+
T Consensus 184 ak~ 186 (753)
T KOG0464|consen 184 AKA 186 (753)
T ss_pred Cce
Confidence 543
No 334
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.81 E-value=1e-08 Score=86.12 Aligned_cols=57 Identities=40% Similarity=0.477 Sum_probs=48.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 173 (348)
+..+++++|.+|+|||||+|++++.....++..+++|+........ ..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCCC
Confidence 4458999999999999999999998876678889999988765543 45899999995
No 335
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.81 E-value=1.4e-08 Score=93.50 Aligned_cols=60 Identities=38% Similarity=0.519 Sum_probs=49.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+..+|+++|.||||||||+|+|.+.+...++..+++|+......+. ..+.++||||+...
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS---DGLELLDTPGILWP 176 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC---CCEEEEECCCcccC
Confidence 3458999999999999999999999877789999999987654442 25899999998544
No 336
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.80 E-value=1.1e-08 Score=94.75 Aligned_cols=60 Identities=35% Similarity=0.512 Sum_probs=50.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+..+|+++|.||||||||+|+|.+.+...+++.|++|+......+. ..+.++||||+...
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtPGi~~~ 179 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG---KGLELLDTPGILWP 179 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC---CcEEEEECCCcCCC
Confidence 3458999999999999999999999887789999999997654432 35899999998653
No 337
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.79 E-value=7.7e-09 Score=89.78 Aligned_cols=56 Identities=41% Similarity=0.472 Sum_probs=45.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCce--------eeecCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKL--------SIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~--------~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 173 (348)
..+++++|.+|||||||+|+|++... ..++..++||+......+.. .+.++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 35899999999999999999997542 34678889999987766543 4799999995
No 338
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.3e-07 Score=88.23 Aligned_cols=135 Identities=16% Similarity=0.193 Sum_probs=84.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeee------cCCCCceEE--eEEEEEeCC--CeeEEEEeCCCCchh-----hhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV------TNKPQTTRH--RILGICSGP--EYQMILYDTPGIIEK-----KIHM 180 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~------~~~~~~t~~--~~~~~~~~~--~~~~~l~DtpG~~~~-----~~~~ 180 (348)
..++++|..|.|||||+|.|++...... ...+..|.. .....+..+ ..+++++||||+++. .+..
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~p 101 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRP 101 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchh
Confidence 4899999999999999999987743311 111211222 222223333 356889999999773 2222
Q ss_pred hHHHHHHHHHhh-----------cc--CccEEEEEecCCC-CCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH
Q 018949 181 LDSMMMKNVRSA-----------GI--NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (348)
Q Consensus 181 l~~~~~~~~~~~-----------~~--~ad~iv~VvD~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~ 246 (348)
+-...-.....| +. +.++|+|.+..+. +....+-.++..+. ..+++|-|+-|.|.....++..
T Consensus 102 i~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~---~~vNiIPVI~KaD~lT~~El~~ 178 (366)
T KOG2655|consen 102 IVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS---KKVNLIPVIAKADTLTKDELNQ 178 (366)
T ss_pred hhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHh---ccccccceeeccccCCHHHHHH
Confidence 222222222222 22 6799999999764 46776666555444 4688899999999999888766
Q ss_pred HHHHHHh
Q 018949 247 KLEWYEK 253 (348)
Q Consensus 247 ~~~~~~~ 253 (348)
....+..
T Consensus 179 ~K~~I~~ 185 (366)
T KOG2655|consen 179 FKKRIRQ 185 (366)
T ss_pred HHHHHHH
Confidence 6555444
No 339
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.6e-08 Score=93.24 Aligned_cols=155 Identities=18% Similarity=0.208 Sum_probs=98.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceee-------------ecCCCCceEEeEE---------EEEeCC------------
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSI-------------VTNKPQTTRHRIL---------GICSGP------------ 161 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~-------------~~~~~~~t~~~~~---------~~~~~~------------ 161 (348)
.+|+++|...+|||||+-.|....... -....+.|..... .++++.
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 389999999999999998886433210 0111122211111 111111
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
..-+.++|.+|+...-...+.. .- --..|.+++|+.+..+.....+..+.+... .++|++++++|+|+.++
T Consensus 248 SKlvTfiDLAGh~kY~~TTi~g-----Lt--gY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~A--L~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQKTTIHG-----LT--GYTPHFACLVVSADRGITWTTREHLGLIAA--LNIPFFVLVTKMDLVDR 318 (591)
T ss_pred cceEEEeecccchhhheeeeee-----cc--cCCCceEEEEEEcCCCCccccHHHHHHHHH--hCCCeEEEEEeeccccc
Confidence 1348999999953211111100 00 124688999999999887777777777777 78999999999999887
Q ss_pred hhHHHHHHHHHh----------------------------cCCCCeEEEecCCCCCCHHHHHHHHH
Q 018949 242 GEIAKKLEWYEK----------------------------FTDVDEVIPVSAKYGHGVEDIRDWIL 279 (348)
Q Consensus 242 ~~~~~~~~~~~~----------------------------~~~~~~i~~vSA~~g~gi~eL~~~i~ 279 (348)
.-++...+++.. .....|+|.+|..+|+|++-|...+.
T Consensus 319 ~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fLn 384 (591)
T KOG1143|consen 319 QGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFLN 384 (591)
T ss_pred hhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHHh
Confidence 544433333332 23456899999999999987766554
No 340
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.78 E-value=3.9e-08 Score=82.52 Aligned_cols=82 Identities=23% Similarity=0.271 Sum_probs=60.1
Q ss_pred cEEEEEecCCCCCchHHHHHH-HhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 197 DCIVVLVDACKAPERIDEILE-EGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~-~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
|++++|+|+..+.......+. ..+.. .++|+++|+||+|+.+..........+.... ..+++++||++|.|+++|+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~-~~~ii~vSa~~~~gi~~L~ 77 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE--KGKKLILVLNKADLVPKEVLRKWLAYLRHSY-PTIPFKISATNGQGIEKKE 77 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc--CCCCEEEEEechhcCCHHHHHHHHHHHHhhC-CceEEEEeccCCcChhhHH
Confidence 789999999877654444444 34444 6799999999999987654444443444333 3478999999999999999
Q ss_pred HHHHHh
Q 018949 276 DWILTK 281 (348)
Q Consensus 276 ~~i~~~ 281 (348)
+.+.+.
T Consensus 78 ~~i~~~ 83 (155)
T cd01849 78 SAFTKQ 83 (155)
T ss_pred HHHHHH
Confidence 998764
No 341
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.76 E-value=1.3e-08 Score=93.10 Aligned_cols=90 Identities=24% Similarity=0.282 Sum_probs=70.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~ 176 (348)
..++++|||.||+|||||.|+|...... ..++|.+|.++....+.... ..+.+.|++|+...
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 3458999999999999999999998877 78999999998776543221 25899999999764
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCC
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDAC 206 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~ 206 (348)
... ...+...++..++.+|+++.|+++.
T Consensus 98 As~--G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASA--GEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccc--CcCchHHHHHhhhhccceeEEEEec
Confidence 422 2233345667789999999999885
No 342
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.76 E-value=4.7e-08 Score=87.14 Aligned_cols=92 Identities=20% Similarity=0.134 Sum_probs=64.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC--ceeeecCCCCceEEeEEEEEeC---CCeeEEEEeCCCCchhhhhhhHHHHHHHH
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ--KLSIVTNKPQTTRHRILGICSG---PEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~--~~~~~~~~~~~t~~~~~~~~~~---~~~~~~l~DtpG~~~~~~~~l~~~~~~~~ 189 (348)
...|+|+|++++|||+|+|.|++. .+........+|+......... .+..+.++||||+.+..... ...+..
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~---~~~~~~ 83 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE---FEDDAR 83 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCc---hhhhhH
Confidence 347999999999999999999999 7776666677888766554443 35789999999986533221 011112
Q ss_pred Hhhcc--CccEEEEEecCCCCC
Q 018949 190 RSAGI--NADCIVVLVDACKAP 209 (348)
Q Consensus 190 ~~~~~--~ad~iv~VvD~~~~~ 209 (348)
..++. -++++||.++.....
T Consensus 84 ~~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 84 LFALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHHhCEEEEeccCcccH
Confidence 22222 489999999886544
No 343
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.75 E-value=2.8e-08 Score=84.80 Aligned_cols=57 Identities=44% Similarity=0.542 Sum_probs=47.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 173 (348)
...+++++|.+|+|||||+|++.+..+..++..+++|.......+. ..+.++||||+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4458999999999999999999998877778888999887665443 45899999996
No 344
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.75 E-value=6.8e-08 Score=82.43 Aligned_cols=92 Identities=26% Similarity=0.355 Sum_probs=65.9
Q ss_pred HHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEec
Q 018949 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 264 (348)
Q Consensus 185 ~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vS 264 (348)
.+.++...+..+|++++|+|++.+.......+...+ .++|+++|+||+|+.+..........+... ..+++.+|
T Consensus 9 ~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~--~~~vi~iS 82 (171)
T cd01856 9 ALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GNKPRIIVLNKADLADPKKTKKWLKYFESK--GEKVLFVN 82 (171)
T ss_pred HHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cCCCEEEEEehhhcCChHHHHHHHHHHHhc--CCeEEEEE
Confidence 345667778999999999999876544333333332 357999999999997654333332333322 23689999
Q ss_pred CCCCCCHHHHHHHHHHhC
Q 018949 265 AKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~l 282 (348)
|+++.|+++|.+.+...+
T Consensus 83 a~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred CCCcccHHHHHHHHHHHH
Confidence 999999999999998875
No 345
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.74 E-value=1.6e-08 Score=96.41 Aligned_cols=119 Identities=22% Similarity=0.160 Sum_probs=70.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc-----eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK-----LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~-----~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
.+|.++|.+|||||||+|+|++.. ...++..|+||+......+. ..+.++||||+.... .+...+.....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~---~~~~l~DtPG~~~~~--~~~~~l~~~~l 229 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD---DGHSLYDTPGIINSH--QMAHYLDKKDL 229 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeC---CCCEEEECCCCCChh--HhhhhcCHHHH
Confidence 489999999999999999999753 34578999999987755442 236899999986531 22221111111
Q ss_pred h---hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 191 S---AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 191 ~---~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
. --.....+++.++..+...--.-.....+.. .+..+.+.++|.+..-.
T Consensus 230 ~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~--~~~~~~~~~~~~~~~h~ 281 (360)
T TIGR03597 230 KYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKG--EKTSFTFYVSNELNIHR 281 (360)
T ss_pred hhcCCCCccCceEEEeCCCCEEEEceEEEEEEecC--CceEEEEEccCCceeEe
Confidence 1 1234566777777654331111011111222 34556667777665543
No 346
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.1e-07 Score=93.99 Aligned_cols=144 Identities=25% Similarity=0.277 Sum_probs=83.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--------------------------------------
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG-------------------------------------- 156 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~-------------------------------------- 156 (348)
.-+|+|.|.+++||||++|+++..+..+ +...++|......
T Consensus 109 ~mKV~ifGrts~GKSt~iNAmL~~klLP-~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 109 HMKVAIFGRTSAGKSTVINAMLHKKLLP-SGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred ccEEEEeCCCCCcHHHHHHHHHHHhhCc-ccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 3389999999999999999999777653 2222222211110
Q ss_pred -------EEeCC-----CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhccccc
Q 018949 157 -------ICSGP-----EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK 224 (348)
Q Consensus 157 -------~~~~~-----~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~ 224 (348)
.++.+ ...+.++|.||+.-.. .....+-+....+|++|||+.+.+..+.....+......
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~s------e~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~-- 259 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDS------ELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSE-- 259 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCch------hhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhc--
Confidence 01111 1258899999973211 111223344689999999999987665544444443333
Q ss_pred CCCCEEEEEeccCCCChh--hHHHHHHHHHhc------CCCCeEEEecCCC
Q 018949 225 DKLPILLVLNKKDLIKPG--EIAKKLEWYEKF------TDVDEVIPVSAKY 267 (348)
Q Consensus 225 ~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~------~~~~~i~~vSA~~ 267 (348)
.+..+.|+.||+|..... ..+....++... .-...+++|||+.
T Consensus 260 ~KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 260 EKPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred cCCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 334456677899987532 122222332211 1223689999764
No 347
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.72 E-value=5.1e-08 Score=80.45 Aligned_cols=82 Identities=23% Similarity=0.172 Sum_probs=58.9
Q ss_pred HHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCC
Q 018949 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 187 ~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
..+...+..+|++++|+|++.+.......+.+.+.....++|+++|+||+|+.+..........+.... .+++++||+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~--~~ii~iSa~ 80 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEG--IVVVFFSAL 80 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcC--CeEEEEEec
Confidence 345677899999999999988775554455555544224789999999999986655444444444433 478999999
Q ss_pred CCCC
Q 018949 267 YGHG 270 (348)
Q Consensus 267 ~g~g 270 (348)
++.+
T Consensus 81 ~~~~ 84 (141)
T cd01857 81 KENA 84 (141)
T ss_pred CCCc
Confidence 8875
No 348
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.72 E-value=3.2e-07 Score=80.16 Aligned_cols=133 Identities=17% Similarity=0.258 Sum_probs=82.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceee-------ecCCCCceEEeEE-EEEeCCC--eeEEEEeCCCCchh-----hhhhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSI-------VTNKPQTTRHRIL-GICSGPE--YQMILYDTPGIIEK-----KIHML 181 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~-------~~~~~~~t~~~~~-~~~~~~~--~~~~l~DtpG~~~~-----~~~~l 181 (348)
.|++||.+|.|||||+|.+...+... ..+.+.|+..... .++..++ .+++++||||+++. .+..+
T Consensus 48 NIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWePI 127 (336)
T KOG1547|consen 48 NIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEPI 127 (336)
T ss_pred EEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHHH
Confidence 79999999999999999987654321 1234444433322 2333333 56889999999773 23333
Q ss_pred HHHHHHHHHhhc--------------cCccEEEEEecCCC-CCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH
Q 018949 182 DSMMMKNVRSAG--------------INADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (348)
Q Consensus 182 ~~~~~~~~~~~~--------------~~ad~iv~VvD~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~ 246 (348)
.....+....|+ .+.++|+|.+..+. .....+..+++-+. .-+.+|-|+-|.|-..-++...
T Consensus 128 ~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt---~vvNvvPVIakaDtlTleEr~~ 204 (336)
T KOG1547|consen 128 EKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLT---EVVNVVPVIAKADTLTLEERSA 204 (336)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHh---hhheeeeeEeecccccHHHHHH
Confidence 333333333332 24688999998864 34555544444332 3467788999999887666555
Q ss_pred HHHHHH
Q 018949 247 KLEWYE 252 (348)
Q Consensus 247 ~~~~~~ 252 (348)
+.+.+.
T Consensus 205 FkqrI~ 210 (336)
T KOG1547|consen 205 FKQRIR 210 (336)
T ss_pred HHHHHH
Confidence 544444
No 349
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.66 E-value=1.6e-07 Score=86.53 Aligned_cols=93 Identities=24% Similarity=0.334 Sum_probs=68.6
Q ss_pred HHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecC
Q 018949 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 186 ~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA 265 (348)
.+.+...+..+|++++|+|+..+.......+.+.+ .++|+++|+||+|+.+..........+.. .+ .+++++||
T Consensus 12 ~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-~~-~~vi~iSa 85 (276)
T TIGR03596 12 RREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR----GNKPRLIVLNKADLADPAVTKQWLKYFEE-KG-IKALAINA 85 (276)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH----CCCCEEEEEEccccCCHHHHHHHHHHHHH-cC-CeEEEEEC
Confidence 35566778999999999999876654444454444 35799999999999765444443344433 22 37899999
Q ss_pred CCCCCHHHHHHHHHHhCCC
Q 018949 266 KYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~ 284 (348)
+++.|+++|.+.+.+.++.
T Consensus 86 ~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 86 KKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred CCcccHHHHHHHHHHHHHH
Confidence 9999999999999887654
No 350
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.62 E-value=8.5e-08 Score=83.27 Aligned_cols=124 Identities=15% Similarity=0.193 Sum_probs=82.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.+|.++|.+|+||||+-..+..+..+.....+|.|.+.....+..- ..-+.+||+.| ++. -+...+...--..+.
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGg--qe~--fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGG--QEE--FMENYLSSQEDNIFR 80 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCC--cHH--HHHHHHhhcchhhhe
Confidence 3899999999999999988887665555667777777666555433 36789999999 432 122222222223468
Q ss_pred CccEEEEEecCCCCC-chHH---HHHHHhcccccCCCCEEEEEeccCCCChhh
Q 018949 195 NADCIVVLVDACKAP-ERID---EILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~-~~~~---~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~ 243 (348)
..+++++|+|+.... +... +..++.+....+...+...+.|+|+...+.
T Consensus 81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~ 133 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA 133 (295)
T ss_pred eheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccch
Confidence 899999999997654 2111 122222333336677889999999986543
No 351
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.62 E-value=1.8e-07 Score=84.50 Aligned_cols=85 Identities=22% Similarity=0.377 Sum_probs=61.5
Q ss_pred hccCccEEEEEecCCCCC---chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~---~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
++.++|.+++|+|++++. .....++ ..+.. .++|+++|+||+||.+..... +....+.. .+ .+++.+||++
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~l~r~l-~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~-~g-~~v~~~SAkt 107 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQLDRFL-VVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRN-IG-YQVLMTSSKN 107 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHHHHHHH-HHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHH-CC-CeEEEEecCC
Confidence 478999999999998654 2333333 33333 679999999999997644432 33344443 33 4799999999
Q ss_pred CCCHHHHHHHHHHh
Q 018949 268 GHGVEDIRDWILTK 281 (348)
Q Consensus 268 g~gi~eL~~~i~~~ 281 (348)
|.|+++|++.+.+.
T Consensus 108 g~gi~eLf~~l~~~ 121 (245)
T TIGR00157 108 QDGLKELIEALQNR 121 (245)
T ss_pred chhHHHHHhhhcCC
Confidence 99999999988753
No 352
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.59 E-value=3.8e-07 Score=84.45 Aligned_cols=159 Identities=17% Similarity=0.200 Sum_probs=98.5
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCceee-------------ecCCCCceEE-------------------------e
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSI-------------VTNKPQTTRH-------------------------R 153 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~-------------~~~~~~~t~~-------------------------~ 153 (348)
+.-..+|+++|...+|||||+-.|....... .....+.|.. .
T Consensus 130 DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~Ld 209 (641)
T KOG0463|consen 130 DFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLD 209 (641)
T ss_pred cceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccc
Confidence 3445699999999999999998775322110 0000011100 0
Q ss_pred EEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEE
Q 018949 154 ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVL 233 (348)
Q Consensus 154 ~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 233 (348)
...++.....-++++|.+|+ +.+-..-- +-..-+-.|..++++.+..+.-...+..+.+.-. ..+|+++|+
T Consensus 210 WvkIce~saKviTFIDLAGH--EkYLKTTv-----FGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALa--L~VPVfvVV 280 (641)
T KOG0463|consen 210 WVKICEDSAKVITFIDLAGH--EKYLKTTV-----FGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALA--LHVPVFVVV 280 (641)
T ss_pred ceeeccccceeEEEEeccch--hhhhheee-----eccccCCCCceEEEecccccceeccHHhhhhhhh--hcCcEEEEE
Confidence 11112222335889999994 32211100 0011356789999999988775555555554444 679999999
Q ss_pred eccCCCChhhHHHHHHHHHh----------------------------cCCCCeEEEecCCCCCCHHHHHHHHH
Q 018949 234 NKKDLIKPGEIAKKLEWYEK----------------------------FTDVDEVIPVSAKYGHGVEDIRDWIL 279 (348)
Q Consensus 234 NK~Dl~~~~~~~~~~~~~~~----------------------------~~~~~~i~~vSA~~g~gi~eL~~~i~ 279 (348)
+|+|..+..-+++.+..+.+ ....+|+|.+|-.+|.|++-|...+.
T Consensus 281 TKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLN 354 (641)
T KOG0463|consen 281 TKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLN 354 (641)
T ss_pred EeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHh
Confidence 99999987766655544432 12347999999999999987666553
No 353
>PRK12289 GTPase RsgA; Reviewed
Probab=98.56 E-value=9e-08 Score=90.62 Aligned_cols=57 Identities=35% Similarity=0.342 Sum_probs=43.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCC-------ceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-------TTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
.++|+|.+|||||||||+|++.....+...++ ||++.....+..+ ..++||||+...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC---cEEEeCCCcccc
Confidence 58999999999999999999877655555665 7777654444333 279999998653
No 354
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.56 E-value=2e-07 Score=78.16 Aligned_cols=57 Identities=37% Similarity=0.568 Sum_probs=44.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGI 173 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~ 173 (348)
...+++++|.+|+|||||+|++.+.....+++.+++|........ +..+.+|||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI---TSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc---CCCEEEEECcCC
Confidence 345899999999999999999998776666778888766443222 235899999994
No 355
>PRK12288 GTPase RsgA; Reviewed
Probab=98.54 E-value=1.8e-07 Score=88.56 Aligned_cols=57 Identities=28% Similarity=0.308 Sum_probs=41.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCC-------ceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-------TTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~-------~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
.++|+|.+|||||||||+|++.....+...+. ||.......+..+ ..++||||+...
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 58999999999999999999887654444443 5655554444333 359999998653
No 356
>PRK13796 GTPase YqeH; Provisional
Probab=98.54 E-value=1.4e-07 Score=90.20 Aligned_cols=57 Identities=42% Similarity=0.519 Sum_probs=45.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC-----ceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCch
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (348)
.++.++|.+|||||||+|+|++. +...++..|+||+......+..+ ..++||||+..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~~ 222 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGIIH 222 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCccc
Confidence 47999999999999999999853 23447899999998776554332 58999999853
No 357
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.52 E-value=7.6e-08 Score=89.50 Aligned_cols=65 Identities=29% Similarity=0.423 Sum_probs=54.1
Q ss_pred CCCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh
Q 018949 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (348)
Q Consensus 110 ~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 177 (348)
+++.+...|+++|+||+||||+||.|...+++.+++.||.|+..+...+. .++.|+||||++-..
T Consensus 302 h~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLm---krIfLIDcPGvVyps 366 (572)
T KOG2423|consen 302 HSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLM---KRIFLIDCPGVVYPS 366 (572)
T ss_pred ccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHH---hceeEecCCCccCCC
Confidence 44566778999999999999999999999999999999999876544332 458999999987543
No 358
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.50 E-value=7.7e-07 Score=82.39 Aligned_cols=92 Identities=24% Similarity=0.361 Sum_probs=67.0
Q ss_pred HHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecC
Q 018949 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 186 ~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA 265 (348)
.+.....+..+|++++|+|+..+.......+...+ .++|+++|+||+|+.+..........+... + .+++++||
T Consensus 15 ~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~-~-~~vi~vSa 88 (287)
T PRK09563 15 RREIKENLKLVDVVIEVLDARIPLSSENPMIDKII----GNKPRLLILNKSDLADPEVTKKWIEYFEEQ-G-IKALAINA 88 (287)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHh----CCCCEEEEEEchhcCCHHHHHHHHHHHHHc-C-CeEEEEEC
Confidence 35566778999999999999877654444454443 258999999999997654333333333322 2 46899999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 018949 266 KYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (348)
+++.|+++|++.+.+.++
T Consensus 89 ~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 89 KKGQGVKKILKAAKKLLK 106 (287)
T ss_pred CCcccHHHHHHHHHHHHH
Confidence 999999999999887654
No 359
>PRK12289 GTPase RsgA; Reviewed
Probab=98.50 E-value=5.4e-07 Score=85.37 Aligned_cols=85 Identities=25% Similarity=0.376 Sum_probs=61.3
Q ss_pred ccCccEEEEEecCCCCC-ch--HHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP-ER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~-~~--~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+.++|.+++|+|+.++. .. .+.++. .... .++|+++|+||+|+.+..+.......+.. .+. +++++||++|.
T Consensus 87 ~aNvD~vLlV~d~~~p~~~~~~LdR~L~-~a~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~-~g~-~v~~iSA~tg~ 161 (352)
T PRK12289 87 VANADQILLVFALAEPPLDPWQLSRFLV-KAES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQ-WGY-QPLFISVETGI 161 (352)
T ss_pred hhcCCEEEEEEECCCCCCCHHHHHHHHH-HHHH--CCCCEEEEEEchhcCChHHHHHHHHHHHh-cCC-eEEEEEcCCCC
Confidence 68999999999997654 22 233333 3333 67999999999999876555444444433 333 78999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++|++.+...+
T Consensus 162 GI~eL~~~L~~ki 174 (352)
T PRK12289 162 GLEALLEQLRNKI 174 (352)
T ss_pred CHHHHhhhhccce
Confidence 9999999887543
No 360
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.48 E-value=5.5e-07 Score=75.84 Aligned_cols=71 Identities=21% Similarity=0.309 Sum_probs=43.8
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchH--HHHHHHhcccccCCCCEEEEEeccCC
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERI--DEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~--~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
..+..++||||+.+. ...+...+........-.+|.+++++|+.+..... ...+..++.. . -++|+||+|+
T Consensus 86 ~~d~I~IEt~G~~~p-~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~--a---d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADP-GPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF--A---DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCH-HHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH--C---CEEEEecccC
Confidence 457899999998653 23333333344445567889999999986533221 1223333333 2 2779999996
No 361
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.45 E-value=4.2e-06 Score=78.35 Aligned_cols=149 Identities=15% Similarity=0.251 Sum_probs=80.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC------CceeeecCCCCc-----------eEEeEEEEE------------------e
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQT-----------TRHRILGIC------------------S 159 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~~-----------t~~~~~~~~------------------~ 159 (348)
...|+++|++|+||||++..|.+ .++..+...+.. .+.....+. .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 44899999999999999998753 233322221110 000001000 1
Q ss_pred CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh-----ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEe
Q 018949 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA-----GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 234 (348)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~-----~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~N 234 (348)
..++.++++||||..+.....+. .+ ..+... -..++.+++|+|++.+...... .....+. -.+.-+|+|
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~-eL-~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~-a~~f~~~---~~~~giIlT 267 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLME-EL-KKIKRVIKKADPDAPHEVLLVLDATTGQNALSQ-AKAFHEA---VGLTGIILT 267 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHH-HH-HHHHHHHhhhcCCCCceEEEEEECCCChHHHHH-HHHHHhh---CCCCEEEEE
Confidence 24567999999996543322221 11 111111 1356789999999876544332 2222221 134478999
Q ss_pred ccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 235 KKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 235 K~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
|.|....- -..+...... + .|+..++ +|+++++|.
T Consensus 268 KlD~t~~~--G~~l~~~~~~-~-~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 268 KLDGTAKG--GVVFAIADEL-G-IPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCCCCCc--cHHHHHHHHH-C-CCEEEEe--CCCChhhCc
Confidence 99965321 1122222222 2 3788887 888887764
No 362
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.44 E-value=3.3e-07 Score=82.83 Aligned_cols=57 Identities=30% Similarity=0.267 Sum_probs=40.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecC-------CCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
..++++|++|||||||+|+|++.....+.. ..+||++.....+ .+ -.++||||+...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~---~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HG---GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CC---cEEEeCCCcccc
Confidence 379999999999999999999865432222 2336766655444 22 379999998653
No 363
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.44 E-value=2.5e-07 Score=77.47 Aligned_cols=58 Identities=29% Similarity=0.340 Sum_probs=35.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeee---c----CCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIV---T----NKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~---~----~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
..++++|++|||||||+|+|++.....+ + ....||.......+.. ...++||||+.+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~---g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD---GGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT---SEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC---CcEEEECCCCCcc
Confidence 3799999999999999999998743221 1 2224455444433322 3689999997553
No 364
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.41 E-value=3.6e-06 Score=81.30 Aligned_cols=119 Identities=19% Similarity=0.259 Sum_probs=68.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCC-----------ceEE--eEEEEEe----------------
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQ-----------TTRH--RILGICS---------------- 159 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~-----------~t~~--~~~~~~~---------------- 159 (348)
+..|+++|.+|+||||++..|. |.++..++..+. ..+. +......
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4579999999999999999985 555554443221 1111 1111111
Q ss_pred CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
..++.++++||||..+.... +-..+.. .. ....+|.+++|+|++.+..... ....+.. .-.+--+|+||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~-lm~El~~-i~-~~~~p~e~lLVlda~~Gq~a~~--~a~~F~~--~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDS-LFEEMLQ-VA-EAIQPDNIIFVMDGSIGQAAEA--QAKAFKD--SVDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHH-HHHHHHH-Hh-hhcCCcEEEEEeccccChhHHH--HHHHHHh--ccCCcEEEEECccCC
Confidence 12578999999996443222 2222211 11 1346789999999987643321 2223222 223567899999975
Q ss_pred C
Q 018949 240 K 240 (348)
Q Consensus 240 ~ 240 (348)
.
T Consensus 253 a 253 (429)
T TIGR01425 253 A 253 (429)
T ss_pred C
Confidence 3
No 365
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.40 E-value=7.8e-06 Score=74.60 Aligned_cols=160 Identities=19% Similarity=0.161 Sum_probs=92.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC----CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG----PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.|.++|..++||||||.+|-|..- ...+.-.......+.. +..++.+|-.-| +....++ ...++.+
T Consensus 54 ~VlvlGdn~sGKtsLi~klqg~e~----~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDG--d~~h~~L----Lk~al~a 123 (473)
T KOG3905|consen 54 NVLVLGDNGSGKTSLISKLQGSET----VKKGSGLEYLYLHVHDEDRDDLTRCNVWILDG--DLYHKGL----LKFALPA 123 (473)
T ss_pred eEEEEccCCCchhHHHHHhhcccc----cCCCCCcceEEEecccccchhhhhcceEEecC--chhhhhH----Hhhcccc
Confidence 799999999999999999998652 2333333332222222 223455666556 3222222 2222222
Q ss_pred ccCc-cEEEEEecCCCCCc---hHHH----------------------------HHHHhccc------------------
Q 018949 193 GINA-DCIVVLVDACKAPE---RIDE----------------------------ILEEGVGD------------------ 222 (348)
Q Consensus 193 ~~~a-d~iv~VvD~~~~~~---~~~~----------------------------~~~~~~~~------------------ 222 (348)
-.-+ .++|+++|.+++.. .... .|.+++.-
T Consensus 124 ts~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~ 203 (473)
T KOG3905|consen 124 TSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSS 203 (473)
T ss_pred cCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCc
Confidence 2222 36778888887741 1111 11111100
Q ss_pred ---------------ccCCCCEEEEEeccCCCCh----hh--------HHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 223 ---------------HKDKLPILLVLNKKDLIKP----GE--------IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 223 ---------------~~~~~p~ivv~NK~Dl~~~----~~--------~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
..-++|++||++|+|.+.. .+ +...+..++...+. ..+.+|++...|++-|.
T Consensus 204 ~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidlly 282 (473)
T KOG3905|consen 204 ADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLY 282 (473)
T ss_pred cccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-eeEEeecccccchHHHH
Confidence 0146899999999998532 11 12223333334443 67999999999999999
Q ss_pred HHHHHhCCCCCC
Q 018949 276 DWILTKLPLGPA 287 (348)
Q Consensus 276 ~~i~~~l~~~~~ 287 (348)
.+|..+.-.-+.
T Consensus 283 KYivhr~yG~~f 294 (473)
T KOG3905|consen 283 KYIVHRSYGFPF 294 (473)
T ss_pred HHHHHHhcCccc
Confidence 999988755433
No 366
>PRK00098 GTPase RsgA; Reviewed
Probab=98.38 E-value=1.5e-06 Score=80.81 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=58.1
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCCh-hhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP-GEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+.++|++++|+|++++. ......++..+.. .++|+++|+||+|+... .........+.. .+ .+++++||+++.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~-~g-~~v~~vSA~~g~ 153 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRA-IG-YDVLELSAKEGE 153 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHH-CC-CeEEEEeCCCCc
Confidence 58999999999997654 2222333333444 67999999999999733 222233333333 23 379999999999
Q ss_pred CHHHHHHHHHH
Q 018949 270 GVEDIRDWILT 280 (348)
Q Consensus 270 gi~eL~~~i~~ 280 (348)
|+++|++.+..
T Consensus 154 gi~~L~~~l~g 164 (298)
T PRK00098 154 GLDELKPLLAG 164 (298)
T ss_pred cHHHHHhhccC
Confidence 99999988754
No 367
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.37 E-value=5.7e-06 Score=77.37 Aligned_cols=152 Identities=20% Similarity=0.341 Sum_probs=90.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc----eeee-------cCC----CCc----eEEeEEE-E-Ee---------------C
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK----LSIV-------TNK----PQT----TRHRILG-I-CS---------------G 160 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~----~~~~-------~~~----~~~----t~~~~~~-~-~~---------------~ 160 (348)
..+|-|.-|+|||||+|.++... .+.. ... ... ......+ + ++ .
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~ 82 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRR 82 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhcc
Confidence 56788999999999999998432 2221 111 000 0000000 0 01 2
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHH---HHHHHhcccccCCCCEEEEEeccC
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID---EILEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~---~~~~~~~~~~~~~~p~ivv~NK~D 237 (348)
+.....++.|.|+.+.. ...............-..|.+|-|||+.+-..... .....++.. .=+||+||+|
T Consensus 83 ~~~D~ivIEtTGlA~P~-pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-----AD~ivlNK~D 156 (323)
T COG0523 83 DRPDRLVIETTGLADPA-PVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF-----ADVIVLNKTD 156 (323)
T ss_pred CCCCEEEEeCCCCCCCH-HHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh-----CcEEEEeccc
Confidence 23568899999987642 22222222122223346688999999986553332 333334333 2389999999
Q ss_pred CCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
+.++..+......+.+..+..+++.+|. .+.+..+++
T Consensus 157 lv~~~~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 157 LVDAEELEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 9998877777778888888888998887 334444443
No 368
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.37 E-value=1.9e-07 Score=87.22 Aligned_cols=64 Identities=34% Similarity=0.440 Sum_probs=54.0
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (348)
.+..+|||+|.|||||||+||+|...+.+.+.+.||.|+......++ ..+.|+|.||++-.+.+
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld---k~i~llDsPgiv~~~~~ 313 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD---KKIRLLDSPGIVPPSID 313 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc---CCceeccCCceeecCCC
Confidence 45669999999999999999999999999999999999987765554 45999999998764433
No 369
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.37 E-value=3.2e-06 Score=80.71 Aligned_cols=91 Identities=30% Similarity=0.308 Sum_probs=62.4
Q ss_pred HHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh----hHHHHHHHHHhcCCC--CeE
Q 018949 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEV 260 (348)
Q Consensus 187 ~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~--~~i 260 (348)
.....+...++++++|+|+.+........+.+.+ .+.|+++|+||+|+.+.. .+...........+. ..+
T Consensus 55 ~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i 130 (360)
T TIGR03597 55 NLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDI 130 (360)
T ss_pred HHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcE
Confidence 3344556788999999999776655444444443 367999999999997532 222222222222333 258
Q ss_pred EEecCCCCCCHHHHHHHHHHh
Q 018949 261 IPVSAKYGHGVEDIRDWILTK 281 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~ 281 (348)
+.+||++|.|+++|++.|.+.
T Consensus 131 ~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 131 ILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred EEecCCCCCCHHHHHHHHHHH
Confidence 999999999999999999765
No 370
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.35 E-value=5.5e-06 Score=71.15 Aligned_cols=136 Identities=22% Similarity=0.370 Sum_probs=77.3
Q ss_pred EEEEEcCCCCChHHHHHHHh-----CCceeeecCCCCce----------EEeEEEE--------------------EeCC
Q 018949 117 YVAVLGKPNVGKSTLANQMI-----GQKLSIVTNKPQTT----------RHRILGI--------------------CSGP 161 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~-----~~~~~~~~~~~~~t----------~~~~~~~--------------------~~~~ 161 (348)
.+.|.|..|+|||||++.++ +.+........+.. ....... ....
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~ 81 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREY 81 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhc
Confidence 57899999999999999998 33444333222210 0001111 1122
Q ss_pred --CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccC
Q 018949 162 --EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 162 --~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~D 237 (348)
.....++.+.|+.+.. .+ .+........-..+.+|.|+|+.+-. ......+...+.. .+ ++|+||+|
T Consensus 82 ~~~~d~IiIE~sG~a~p~--~l--~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~--AD---vIvlnK~D 152 (178)
T PF02492_consen 82 EERPDRIIIETSGLADPA--PL--ILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF--AD---VIVLNKID 152 (178)
T ss_dssp HGC-SEEEEEEECSSGGG--GH--HHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT---S---EEEEE-GG
T ss_pred CCCcCEEEECCccccccc--hh--hhccccccccccccceeEEeccccccccccchhhhhhcchh--cC---EEEEeccc
Confidence 3578999999976533 22 11122222234678999999996521 2233444445444 22 88999999
Q ss_pred CCChh-hHHHHHHHHHhcCCCCeEE
Q 018949 238 LIKPG-EIAKKLEWYEKFTDVDEVI 261 (348)
Q Consensus 238 l~~~~-~~~~~~~~~~~~~~~~~i~ 261 (348)
+.+.. .+......++...+..+++
T Consensus 153 ~~~~~~~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 153 LVSDEQKIERVREMIRELNPKAPIV 177 (178)
T ss_dssp GHHHH--HHHHHHHHHHH-TTSEEE
T ss_pred cCChhhHHHHHHHHHHHHCCCCEEe
Confidence 99876 3366666777766666655
No 371
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.33 E-value=1.7e-05 Score=72.74 Aligned_cols=149 Identities=16% Similarity=0.235 Sum_probs=79.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCc-----------eEEeEEEE------------------Ee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT-----------TRHRILGI------------------CS 159 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~-----------t~~~~~~~------------------~~ 159 (348)
...|+++|++|+||||++..+. |.++..+...+.. .+...... ..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~ 151 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAK 151 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3479999999999999988874 2333333222100 00000000 01
Q ss_pred CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc-----cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEe
Q 018949 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG-----INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLN 234 (348)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~-----~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~N 234 (348)
..++.+.++||||..+.....+ ..+ ..+.... ..+|.+++|+|++.+..... ......+. . .+.-+|+|
T Consensus 152 ~~~~D~ViIDT~G~~~~d~~~~-~el-~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~-~~~~f~~~--~-~~~g~IlT 225 (272)
T TIGR00064 152 ARNIDVVLIDTAGRLQNKVNLM-DEL-KKIKRVIKKVDKDAPDEVLLVLDATTGQNALE-QAKVFNEA--V-GLTGIILT 225 (272)
T ss_pred HCCCCEEEEeCCCCCcchHHHH-HHH-HHHHHHHhcccCCCCceEEEEEECCCCHHHHH-HHHHHHhh--C-CCCEEEEE
Confidence 2457899999999654221111 111 1121222 24899999999986543332 23333322 1 24578999
Q ss_pred ccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 235 KKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 235 K~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
|.|....-- ..+...... + .|+..++ +|++++++.
T Consensus 226 KlDe~~~~G--~~l~~~~~~-~-~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 226 KLDGTAKGG--IILSIAYEL-K-LPIKFIG--VGEKIDDLA 260 (272)
T ss_pred ccCCCCCcc--HHHHHHHHH-C-cCEEEEe--CCCChHhCc
Confidence 999864321 112222222 2 3777777 888887654
No 372
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=4.4e-06 Score=81.09 Aligned_cols=109 Identities=22% Similarity=0.276 Sum_probs=75.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+..|+++|+||+||||||.+|+..--.. .....| -..++.++..+++++.||. + + ..+...
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G-----PiTvvsgK~RRiTflEcp~--D-----l-----~~miDv 130 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG-----PITVVSGKTRRITFLECPS--D-----L-----HQMIDV 130 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC-----ceEEeecceeEEEEEeChH--H-----H-----HHHHhH
Confidence 34468899999999999999987532110 011111 1223456667899999995 2 1 112233
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEE-EEEeccCCCCh
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLIKP 241 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl~~~ 241 (348)
..-||+|++++|+.-+++-..-.++.++.. .+.|-| -|++..|+...
T Consensus 131 aKIaDLVlLlIdgnfGfEMETmEFLnil~~--HGmPrvlgV~ThlDlfk~ 178 (1077)
T COG5192 131 AKIADLVLLLIDGNFGFEMETMEFLNILIS--HGMPRVLGVVTHLDLFKN 178 (1077)
T ss_pred HHhhheeEEEeccccCceehHHHHHHHHhh--cCCCceEEEEeecccccC
Confidence 578999999999999987777777777776 566755 58999999754
No 373
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.30 E-value=3.4e-06 Score=78.07 Aligned_cols=83 Identities=24% Similarity=0.319 Sum_probs=58.5
Q ss_pred ccCccEEEEEecCCCCC---chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~---~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+.++|++++|+|+..+. ...+. ++..+.. .++|+++|+||+|+.+..+.......... .+ .+++++||+++.
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr-~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-~g-~~v~~vSA~~g~ 150 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDR-YLVAAEA--AGIEPVIVLTKADLLDDEEEELELVEALA-LG-YPVLAVSAKTGE 150 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHH-HHHHHHH--cCCCEEEEEEHHHCCChHHHHHHHHHHHh-CC-CeEEEEECCCCc
Confidence 67999999999998765 23333 3333344 57999999999999765332222222222 33 489999999999
Q ss_pred CHHHHHHHHHH
Q 018949 270 GVEDIRDWILT 280 (348)
Q Consensus 270 gi~eL~~~i~~ 280 (348)
|+++|+..+..
T Consensus 151 gi~~L~~~L~~ 161 (287)
T cd01854 151 GLDELREYLKG 161 (287)
T ss_pred cHHHHHhhhcc
Confidence 99999988764
No 374
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.27 E-value=1.3e-06 Score=79.79 Aligned_cols=61 Identities=30% Similarity=0.364 Sum_probs=40.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceee---ec----CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI---VT----NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~---~~----~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (348)
....+++|++|||||||+|+|.+..... ++ ..-+||.+.....+..+| .++||||+.+...
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l 231 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGL 231 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccCc
Confidence 3379999999999999999998743221 22 223456655544443333 6899999865443
No 375
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.27 E-value=9.3e-06 Score=76.21 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=48.2
Q ss_pred EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC------------chHHHHHHHhccc-cc
Q 018949 158 CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP------------ERIDEILEEGVGD-HK 224 (348)
Q Consensus 158 ~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~------------~~~~~~~~~~~~~-~~ 224 (348)
+..++..+.+||++|. ... ...+..++..+++++||+|.++-. .+....+..++.. ..
T Consensus 156 f~~~~~~~~~~DvgGq--~~~-------R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 156 FTIKNLKFRMFDVGGQ--RSE-------RKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred EEecceEEEEECCCCC--ccc-------chhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 3445677999999994 222 234556688999999999998631 1111222222222 12
Q ss_pred CCCCEEEEEeccCCCC
Q 018949 225 DKLPILLVLNKKDLIK 240 (348)
Q Consensus 225 ~~~p~ivv~NK~Dl~~ 240 (348)
.+.|+++++||.|+..
T Consensus 227 ~~~pill~~NK~D~f~ 242 (317)
T cd00066 227 ANTSIILFLNKKDLFE 242 (317)
T ss_pred cCCCEEEEccChHHHH
Confidence 5799999999999753
No 376
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.24 E-value=1.5e-06 Score=69.28 Aligned_cols=114 Identities=20% Similarity=0.151 Sum_probs=64.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|..|+|||+|+.++....+.. .+.. .|.. +..+| ..+.+.+
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~~~-~~~~-~t~~------------~~~~~--------------------~~~~~s~ 47 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPFDY-VPTV-FTIG------------IDVYD--------------------PTSYESF 47 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCccc-cCce-ehhh------------hhhcc--------------------ccccCCC
Confidence 79999999999999999996655431 1110 1111 11111 1124577
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
+.++.|++.+........+........+.+.|.++++||.|+........... .+++.+|+++|.|+.
T Consensus 48 ~~~~~v~~~~~~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 48 DVVLQCWRVDDRDSADNKNVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred CEEEEEEEccCHHHHHHHhHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 88887777765432211133222222235688999999999843222111100 134667999999884
No 377
>PRK00098 GTPase RsgA; Reviewed
Probab=98.22 E-value=2.4e-06 Score=79.50 Aligned_cols=57 Identities=32% Similarity=0.310 Sum_probs=38.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCC-------CceEEeEEEEEeCCCeeEEEEeCCCCch
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-------QTTRHRILGICSGPEYQMILYDTPGIIE 175 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (348)
..++++|++|||||||+|+|++.....+...+ .||+......+... ..++||||+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 37999999999999999999986543222222 35554443333322 48899999864
No 378
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=2.7e-06 Score=79.65 Aligned_cols=155 Identities=17% Similarity=0.137 Sum_probs=94.1
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCcee------------------------eecCC------CCceEEeEEEEEeCC
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLS------------------------IVTNK------PQTTRHRILGICSGP 161 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~------------------------~~~~~------~~~t~~~~~~~~~~~ 161 (348)
+....++.++|+..+||||+-..|+..... +..++ -+.|...-...+...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 345568999999999999998887642211 11111 234444445556666
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-------chHHHHHHHhcccccCCCCEEEEEe
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLPILLVLN 234 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-------~~~~~~~~~~~~~~~~~~p~ivv~N 234 (348)
...+.+.|+||+... ...+..-..+||+.++|+.+..+. -.+......+.+.. .-...|+++|
T Consensus 156 ~~~ftiLDApGHk~f---------v~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~vN 225 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSF---------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVLIN 225 (501)
T ss_pred ceeEEeeccCccccc---------chhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEEEE
Confidence 778999999995332 223334467899999999986432 11222233333332 3356899999
Q ss_pred ccCCCChh----hHHHHHHHHH---hcC-----CCCeEEEecCCCCCCHHHHHH
Q 018949 235 KKDLIKPG----EIAKKLEWYE---KFT-----DVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 235 K~Dl~~~~----~~~~~~~~~~---~~~-----~~~~i~~vSA~~g~gi~eL~~ 276 (348)
|+|-+..+ ...+....+. ... ....++++|..+|.++.+...
T Consensus 226 KMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 226 KMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred eccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 99987432 1122221111 111 123579999999999988664
No 379
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.21 E-value=4.3e-06 Score=77.42 Aligned_cols=57 Identities=35% Similarity=0.391 Sum_probs=39.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeec-------CCCCceEEeEEEEEeCCCeeEEEEeCCCCch
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-------NKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (348)
..++++|++|||||||+|+|++.....+. ...+||.......+... ..++||||+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCc
Confidence 47999999999999999999986543221 12235655544333322 36899999844
No 380
>PRK14974 cell division protein FtsY; Provisional
Probab=98.20 E-value=6e-06 Score=77.68 Aligned_cols=149 Identities=17% Similarity=0.215 Sum_probs=78.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC------CceeeecCCCCc---e--------E--EeEEE-E---------------E
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQT---T--------R--HRILG-I---------------C 158 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~~---t--------~--~~~~~-~---------------~ 158 (348)
++..|+++|.+|+||||++..+.. .++..+...+.. . . ..... . .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 345899999999999998877642 223222211100 0 0 00000 0 0
Q ss_pred eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCC
Q 018949 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
...+..++++||+|..+.....+.. + +.+.. ....|.+++|+|++.+.... ......... . ..--+++||.|.
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~e-L-~~i~~-~~~pd~~iLVl~a~~g~d~~-~~a~~f~~~--~-~~~giIlTKlD~ 291 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDE-L-KKIVR-VTKPDLVIFVGDALAGNDAV-EQAREFNEA--V-GIDGVILTKVDA 291 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHH-H-HHHHH-hhCCceEEEeeccccchhHH-HHHHHHHhc--C-CCCEEEEeeecC
Confidence 1234579999999975432222211 1 11212 23578999999997654222 222222222 1 234688999998
Q ss_pred CChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 239 IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
...-- ..+...... ..|+..++ +|++++++.
T Consensus 292 ~~~~G--~~ls~~~~~--~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 292 DAKGG--AALSIAYVI--GKPILFLG--VGQGYDDLI 322 (336)
T ss_pred CCCcc--HHHHHHHHH--CcCEEEEe--CCCChhhcc
Confidence 64221 112222221 23778877 799998765
No 381
>PRK13796 GTPase YqeH; Provisional
Probab=98.19 E-value=1.6e-05 Score=76.15 Aligned_cols=90 Identities=26% Similarity=0.255 Sum_probs=61.4
Q ss_pred HHhhccCcc-EEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh----hHHHHHHHHHhcCCC--CeEE
Q 018949 189 VRSAGINAD-CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEVI 261 (348)
Q Consensus 189 ~~~~~~~ad-~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~--~~i~ 261 (348)
..+.+...| +|++|+|+.+........+.+.. .+.|+++|+||+|+.+.. .+...........+. ..++
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~ 137 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVV 137 (365)
T ss_pred HHHhhcccCcEEEEEEECccCCCchhHHHHHHh----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEE
Confidence 445556666 99999999876555444444433 367999999999997532 222233333333332 2689
Q ss_pred EecCCCCCCHHHHHHHHHHhC
Q 018949 262 PVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~l 282 (348)
.+||++|.|+++|++.|.+..
T Consensus 138 ~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 138 LISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 999999999999999998764
No 382
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.16 E-value=4.8e-05 Score=74.67 Aligned_cols=62 Identities=24% Similarity=0.249 Sum_probs=42.8
Q ss_pred CCCEEEEEeccCCCCh---------hh---HHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCC
Q 018949 226 KLPILLVLNKKDLIKP---------GE---IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAY 288 (348)
Q Consensus 226 ~~p~ivv~NK~Dl~~~---------~~---~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~ 288 (348)
++|++||++|+|.... .. +...+..+.-..+. ..+.+|++...+++-|+.+|...+...+..
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi~h~l~~~~f~ 269 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYILHRLYGFPFK 269 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHHHHHhccCCCC
Confidence 4799999999997531 11 12222333333443 678899999999999999999888654443
No 383
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.14 E-value=2e-05 Score=75.02 Aligned_cols=122 Identities=16% Similarity=0.249 Sum_probs=66.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC--------ceeeecCCCCc-------------eEEeEEEE----------EeCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ--------KLSIVTNKPQT-------------TRHRILGI----------CSGPE 162 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~--------~~~~~~~~~~~-------------t~~~~~~~----------~~~~~ 162 (348)
+...++++|++||||||++.+|... ++..++..... -....... ....+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 3458999999999999999998632 12222111100 00000001 11235
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCC-------CEEEEEec
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-------PILLVLNK 235 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~-------p~ivv~NK 235 (348)
..++++||||..+... .+...+ ... .....+.-.++|++++.+.......+..+... ... +-=+|+||
T Consensus 216 ~DlVLIDTaG~~~~d~-~l~e~L-a~L-~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~--~~~p~~~~~~~~~~I~TK 290 (374)
T PRK14722 216 KHMVLIDTIGMSQRDR-TVSDQI-AML-HGADTPVQRLLLLNATSHGDTLNEVVQAYRSA--AGQPKAALPDLAGCILTK 290 (374)
T ss_pred CCEEEEcCCCCCcccH-HHHHHH-HHH-hccCCCCeEEEEecCccChHHHHHHHHHHHHh--hcccccccCCCCEEEEec
Confidence 6799999999653221 111111 111 12234556789999988776665555444332 111 23577899
Q ss_pred cCCCC
Q 018949 236 KDLIK 240 (348)
Q Consensus 236 ~Dl~~ 240 (348)
.|-..
T Consensus 291 lDEt~ 295 (374)
T PRK14722 291 LDEAS 295 (374)
T ss_pred cccCC
Confidence 99764
No 384
>PRK12288 GTPase RsgA; Reviewed
Probab=98.13 E-value=1.8e-05 Score=75.01 Aligned_cols=85 Identities=26% Similarity=0.379 Sum_probs=58.5
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhh---HHHHHHHHHhcCCCCeEEEecCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
..++|.+++|++..... ...+.++. .... .++|.++|+||+|+.+..+ .......+.. .+ .+++++||++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~-~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~-~g-~~v~~vSA~t 192 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLV-ACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRN-IG-YRVLMVSSHT 192 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHH-HHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHh-CC-CeEEEEeCCC
Confidence 46799999998876443 33344433 3333 6799999999999986442 2222233322 23 4899999999
Q ss_pred CCCHHHHHHHHHHhC
Q 018949 268 GHGVEDIRDWILTKL 282 (348)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (348)
+.|+++|++.+...+
T Consensus 193 g~GideL~~~L~~ki 207 (347)
T PRK12288 193 GEGLEELEAALTGRI 207 (347)
T ss_pred CcCHHHHHHHHhhCC
Confidence 999999999997643
No 385
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.12 E-value=3.3e-05 Score=75.62 Aligned_cols=156 Identities=19% Similarity=0.149 Sum_probs=91.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEe-E-EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR-I-LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~-~-~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
...+-++|+.++|||.++++++|..+.. +....+.... . ...+.....-+.|.|.+-..+ ..+. ..
T Consensus 425 Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~~---~~l~--------~k 492 (625)
T KOG1707|consen 425 VFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQQKYLILREIGEDDQ---DFLT--------SK 492 (625)
T ss_pred eeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccccceEEEeecCcccc---cccc--------Cc
Confidence 3378999999999999999999977653 2222111111 1 111223344466666654211 1110 11
Q ss_pred ccCccEEEEEecCCCCCchHH-HHHHHhcccccCCCCEEEEEeccCCCChhh-HHHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 193 GINADCIVVLVDACKAPERID-EILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
-..||++++++|.+++..... ..+.+..... ...|+++|++|+|+....+ ..-....+....+..+.+.+|.++...
T Consensus 493 e~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s 571 (625)
T KOG1707|consen 493 EAACDVACLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS 571 (625)
T ss_pred cceeeeEEEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC
Confidence 158999999999986542211 1222222222 6799999999999975431 111124444555555667777775222
Q ss_pred HHHHHHHHHHhCCC
Q 018949 271 VEDIRDWILTKLPL 284 (348)
Q Consensus 271 i~eL~~~i~~~l~~ 284 (348)
.++|..|..+...
T Consensus 572 -~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 572 -NELFIKLATMAQY 584 (625)
T ss_pred -chHHHHHHHhhhC
Confidence 8899999887765
No 386
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.09 E-value=6e-06 Score=75.14 Aligned_cols=64 Identities=38% Similarity=0.449 Sum_probs=49.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC-----CceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG-----QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI 178 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 178 (348)
...|.|+|.||+|||||+|++.. .+.+.+...||.|+.....+.-.....+.++||||......
T Consensus 143 ~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I 211 (335)
T KOG2485|consen 143 EYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSI 211 (335)
T ss_pred ceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCC
Confidence 34899999999999999999752 24556788999998877655444556799999999876543
No 387
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.06 E-value=6e-05 Score=71.40 Aligned_cols=154 Identities=18% Similarity=0.232 Sum_probs=84.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC----ceeeecCCCCce----------------EEeEEEE-----------------
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ----KLSIVTNKPQTT----------------RHRILGI----------------- 157 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~----~~~~~~~~~~~t----------------~~~~~~~----------------- 157 (348)
.+..++.|..|+|||||+|.++.. +.....+..+.. .......
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~l 83 (341)
T TIGR02475 4 IPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPTM 83 (341)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHHH
Confidence 346888899999999999999743 222221111110 0001100
Q ss_pred ---Ee-CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCc-----------------------
Q 018949 158 ---CS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE----------------------- 210 (348)
Q Consensus 158 ---~~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~----------------------- 210 (348)
.. .......++.|.|+.+.. .+-..+........-..|.+|.|+|+.+...
T Consensus 84 ~~l~~~~~~~d~IvIEtsG~a~P~--~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (341)
T TIGR02475 84 TKLLARRQRPDHILIETSGLALPK--PLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHE 161 (341)
T ss_pred HHHHhccCCCCEEEEeCCCCCCHH--HHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhcccccccccc
Confidence 01 123568899999986532 2222221111111225688999999974321
Q ss_pred -hHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCC-CCeEEEecCCCCCCHHHHHH
Q 018949 211 -RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD-VDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 211 -~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~i~~vSA~~g~gi~eL~~ 276 (348)
.....+..++.. .-+|++||+|+.+..++......++...+ ..+++.++ ........++.
T Consensus 162 ~~~~~~~~~Qi~~-----AD~IvlnK~Dl~~~~~l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 162 TPLEELFEDQLAC-----ADLVILNKADLLDAAGLARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred chHHHHHHHHHHh-----CCEEEEeccccCCHHHHHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence 001122233322 23899999999998888877777776444 34666654 22334555544
No 388
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.04 E-value=1.3e-05 Score=68.93 Aligned_cols=76 Identities=21% Similarity=0.293 Sum_probs=41.8
Q ss_pred eEEEEeCCCCchh-hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHh----cccccCCCCEEEEEeccCC
Q 018949 164 QMILYDTPGIIEK-KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEG----VGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 164 ~~~l~DtpG~~~~-~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~----~~~~~~~~p~ivv~NK~Dl 238 (348)
.+.++|+||.++- ..-.+-..+.+....+ .---+++|++|+.--. ...+.+... .......+|.|=|++|+|+
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~-~F~~c~Vylldsqf~v-D~~KfiSG~lsAlsAMi~lE~P~INvlsKMDL 176 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQW-NFNVCVVYLLDSQFLV-DSTKFISGCLSALSAMISLEVPHINVLSKMDL 176 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcc-cCceeEEEEeccchhh-hHHHHHHHHHHHHHHHHHhcCcchhhhhHHHH
Confidence 5899999996542 1112223333444442 2234678888874221 111221111 1111257999999999999
Q ss_pred CCh
Q 018949 239 IKP 241 (348)
Q Consensus 239 ~~~ 241 (348)
...
T Consensus 177 lk~ 179 (273)
T KOG1534|consen 177 LKD 179 (273)
T ss_pred hhh
Confidence 865
No 389
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.04 E-value=6.8e-05 Score=70.32 Aligned_cols=142 Identities=21% Similarity=0.341 Sum_probs=76.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC----ceeeecCCCCce-----------EEeEE---E-EE-eC--------------
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ----KLSIVTNKPQTT-----------RHRIL---G-IC-SG-------------- 160 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~----~~~~~~~~~~~t-----------~~~~~---~-~~-~~-------------- 160 (348)
.+..++.|.-|+|||||+|.++.. +.+...+..|.. ..... + ++ ..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~~ 83 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHHH
Confidence 357889999999999999999843 222211111110 00000 0 00 00
Q ss_pred -----CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHH--HHHHHhcccccCCCCEEEEE
Q 018949 161 -----PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID--EILEEGVGDHKDKLPILLVL 233 (348)
Q Consensus 161 -----~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~--~~~~~~~~~~~~~~p~ivv~ 233 (348)
......++.|.|+.+.. .-+...+........-..+.+|.|+|+.+...... .....++.. .-+||+
T Consensus 84 ~~~~~~~~d~IvIEttG~a~p~-~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-----AD~Ivl 157 (318)
T PRK11537 84 LDKGNIQFDRLVIECTGMADPG-PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-----ADRILL 157 (318)
T ss_pred HhccCCCCCEEEEECCCccCHH-HHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-----CCEEEE
Confidence 02567899999986522 22222111111111224588999999975432111 122222222 238999
Q ss_pred eccCCCChhhHHHHHHHHHhcCCCCeEEEec
Q 018949 234 NKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 264 (348)
Q Consensus 234 NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vS 264 (348)
||+|+.+.. ......++...+..+++.++
T Consensus 158 nK~Dl~~~~--~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 158 TKTDVAGEA--EKLRERLARINARAPVYTVV 186 (318)
T ss_pred eccccCCHH--HHHHHHHHHhCCCCEEEEec
Confidence 999998753 44556666666666777654
No 390
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=6.5e-06 Score=78.96 Aligned_cols=112 Identities=25% Similarity=0.301 Sum_probs=73.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--------------EE-----------------EeCCCeeE
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--------------GI-----------------CSGPEYQM 165 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--------------~~-----------------~~~~~~~~ 165 (348)
++.++.+...|||||..+|......+.....+.++..-. .+ -+..+.-+
T Consensus 21 NmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLi 100 (842)
T KOG0469|consen 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLI 100 (842)
T ss_pred cceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeE
Confidence 577888999999999999986554333334433322110 00 12345679
Q ss_pred EEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 166 ~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
+++|.||+++.. .++-.+++-.|++++|+|+-++.=.+.+.++...-. .++.-++++||+|..
T Consensus 101 NLIDSPGHVDFS---------SEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~--ERIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 101 NLIDSPGHVDFS---------SEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIA--ERIKPVLVMNKMDRA 163 (842)
T ss_pred EeccCCCcccch---------hhhhheeEeccCcEEEEEccCceEechHHHHHHHHH--hhccceEEeehhhHH
Confidence 999999987754 234456789999999999988874444554443332 344447789999963
No 391
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.03 E-value=0.00028 Score=67.16 Aligned_cols=222 Identities=18% Similarity=0.175 Sum_probs=113.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCcee---------------eecCCCCceEEe----------EEEEEe-CCCeeEEEEeC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNKPQTTRHR----------ILGICS-GPEYQMILYDT 170 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~---------------~~~~~~~~t~~~----------~~~~~~-~~~~~~~l~Dt 170 (348)
-|++||+.-+||||||.+|...-+. ......|.|..+ ....+. .-..++.++||
T Consensus 19 YiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLiDC 98 (492)
T PF09547_consen 19 YIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLIDC 98 (492)
T ss_pred EEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEEee
Confidence 5999999999999999998632110 011222322221 111222 23568999999
Q ss_pred CCCchhhh---------hhhH-------HHHHHH----HHhhcc--CccEEEEEecCCCCC------chHHHHHHHhccc
Q 018949 171 PGIIEKKI---------HMLD-------SMMMKN----VRSAGI--NADCIVVLVDACKAP------ERIDEILEEGVGD 222 (348)
Q Consensus 171 pG~~~~~~---------~~l~-------~~~~~~----~~~~~~--~ad~iv~VvD~~~~~------~~~~~~~~~~~~~ 222 (348)
-|+.-... +-+. -.|.+. +++.+. ..=++|+.-|.+-+. ....+.....++.
T Consensus 99 VGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~ 178 (492)
T PF09547_consen 99 VGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELKE 178 (492)
T ss_pred cceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHHH
Confidence 98732110 0000 001111 111122 223455555655322 2233445556666
Q ss_pred ccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCC--CCCHHHHHHHHHHhCCCC-----CCCCCCcccC
Q 018949 223 HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY--GHGVEDIRDWILTKLPLG-----PAYYPKDIVS 295 (348)
Q Consensus 223 ~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~--g~gi~eL~~~i~~~l~~~-----~~~~~~~~~~ 295 (348)
-++|+++++|=.+-. ..+.......+...++. |++++++.. .+.+..++..++-..|-. .+.|-.....
T Consensus 179 --igKPFvillNs~~P~-s~et~~L~~eL~ekY~v-pVlpvnc~~l~~~DI~~Il~~vLyEFPV~Ei~~~lP~Wve~L~~ 254 (492)
T PF09547_consen 179 --IGKPFVILLNSTKPY-SEETQELAEELEEKYDV-PVLPVNCEQLREEDITRILEEVLYEFPVSEININLPKWVEMLED 254 (492)
T ss_pred --hCCCEEEEEeCCCCC-CHHHHHHHHHHHHHhCC-cEEEeehHHcCHHHHHHHHHHHHhcCCceEEEeecchHHhhcCC
Confidence 689999999977743 34445566667766665 888887653 344555555444322210 1111112222
Q ss_pred CCchHHHHHHHHHHHHHh-----------hccCCCCceEEEEeeEEEeccceEEEeee
Q 018949 296 EHPERFFVGEIIREKIFM-----------QYRNEVPYACQVCNLTFQHWLIFVEFNAF 342 (348)
Q Consensus 296 ~~~~~~~~~e~ire~~~~-----------~~~~eip~~~~~~~~~~~~~~~~~~~~~~ 342 (348)
++..+..+.+.+++.+-. ....+-+|...+.+..+..-.+.+++..-
T Consensus 255 ~Hwlk~~~~~~i~~~~~~i~~irDi~~~~~~~~~~e~i~~~~l~~idlg~G~a~i~i~ 312 (492)
T PF09547_consen 255 DHWLKQSFIEAIKESLQDISKIRDIDKIVDQLSECEYIEKVKLEEIDLGTGSARIDIE 312 (492)
T ss_pred CchHHHHHHHHHHHHHHhccHHhhHHHHHhhccccchhhhcceeeEECCCcEEEEEEE
Confidence 333332233333332211 12245688888888888887777776643
No 392
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.03 E-value=0.00014 Score=70.64 Aligned_cols=126 Identities=19% Similarity=0.226 Sum_probs=74.6
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeee-------------------------------------------------
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIV------------------------------------------------- 143 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~------------------------------------------------- 143 (348)
..-++|++||.-++||||.+..+......+-
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 3456999999999999999999865443221
Q ss_pred ----cCCCCceEEeEEE--EEeCCC-eeEEEEeCCCCchhhhh----hhHHHHHHHHHhhccCccEEEEEecCCCCC--c
Q 018949 144 ----TNKPQTTRHRILG--ICSGPE-YQMILYDTPGIIEKKIH----MLDSMMMKNVRSAGINADCIVVLVDACKAP--E 210 (348)
Q Consensus 144 ----~~~~~~t~~~~~~--~~~~~~-~~~~l~DtpG~~~~~~~----~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~--~ 210 (348)
+...|+|...-.. .+.+.+ .+.+++|.||.+..-.. ............++.+..+||+++--..-. .
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAER 465 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAER 465 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhh
Confidence 1111222222111 122222 35889999998653211 112223455677889999999987432211 2
Q ss_pred hHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 211 RIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 211 ~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
.....+...+.. .+...|+|++|+|+..
T Consensus 466 SnVTDLVsq~DP--~GrRTIfVLTKVDlAE 493 (980)
T KOG0447|consen 466 SIVTDLVSQMDP--HGRRTIFVLTKVDLAE 493 (980)
T ss_pred hhHHHHHHhcCC--CCCeeEEEEeecchhh
Confidence 222233334444 5678899999999864
No 393
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=98.03 E-value=2.1e-05 Score=71.13 Aligned_cols=144 Identities=19% Similarity=0.292 Sum_probs=77.5
Q ss_pred CCCCCCccEEEEEcCCCCChHHHHHHHhCC----ceeeecCCCCceEE------------------------eEEEEE--
Q 018949 109 SHPNHKSGYVAVLGKPNVGKSTLANQMIGQ----KLSIVTNKPQTTRH------------------------RILGIC-- 158 (348)
Q Consensus 109 ~~~~~~~~~v~i~G~~~~GKSsLin~l~~~----~~~~~~~~~~~t~~------------------------~~~~~~-- 158 (348)
..+..+.|.-.|.|+-|+|||||+|.++.. +.+...+..|.... .....+
T Consensus 51 ~~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~ 130 (391)
T KOG2743|consen 51 SSLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKD 130 (391)
T ss_pred cCCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecc
Confidence 345556677889999999999999998732 23322222221100 000111
Q ss_pred -----------eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHH-----HHHHHhccc
Q 018949 159 -----------SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID-----EILEEGVGD 222 (348)
Q Consensus 159 -----------~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~-----~~~~~~~~~ 222 (348)
.-+.....++.|.|+..+.+ -....+.+.-+..--..|+||-|+|+.+.....+ -.+.+....
T Consensus 131 ~gvraie~lvqkkGkfD~IllETTGlAnPaP-ia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Q 209 (391)
T KOG2743|consen 131 NGVRAIENLVQKKGKFDHILLETTGLANPAP-IASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQ 209 (391)
T ss_pred hHHHHHHHHHhcCCCcceEEEeccCCCCcHH-HHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHH
Confidence 12234678999999866432 1122223333333346799999999965321111 111111111
Q ss_pred ccCCCCEEEEEeccCCCChhhHHHHHHHHHhcC
Q 018949 223 HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT 255 (348)
Q Consensus 223 ~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~ 255 (348)
-...--+++||.|+....++....+.++...
T Consensus 210 --iA~AD~II~NKtDli~~e~~~~l~q~I~~IN 240 (391)
T KOG2743|consen 210 --IALADRIIMNKTDLVSEEEVKKLRQRIRSIN 240 (391)
T ss_pred --HhhhheeeeccccccCHHHHHHHHHHHHHhh
Confidence 0111247799999998877665555555433
No 394
>PRK01889 GTPase RsgA; Reviewed
Probab=98.02 E-value=3.1e-05 Score=73.82 Aligned_cols=83 Identities=22% Similarity=0.241 Sum_probs=58.1
Q ss_pred ccCccEEEEEecCCCCCch-HHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 193 GINADCIVVLVDACKAPER-IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
..++|.+++|+++..++.. ..+.++..+.. .++|.+||+||+|+.+... .....+.......+++.+|+++|.|+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~--~~i~piIVLNK~DL~~~~~--~~~~~~~~~~~g~~Vi~vSa~~g~gl 185 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE--SGAEPVIVLTKADLCEDAE--EKIAEVEALAPGVPVLAVSALDGEGL 185 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH--cCCCEEEEEEChhcCCCHH--HHHHHHHHhCCCCcEEEEECCCCccH
Confidence 4789999999999755533 33344444444 6788899999999986421 12223333233358999999999999
Q ss_pred HHHHHHHH
Q 018949 272 EDIRDWIL 279 (348)
Q Consensus 272 ~eL~~~i~ 279 (348)
++|..++.
T Consensus 186 ~~L~~~L~ 193 (356)
T PRK01889 186 DVLAAWLS 193 (356)
T ss_pred HHHHHHhh
Confidence 99999885
No 395
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.98 E-value=6e-05 Score=65.73 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=63.3
Q ss_pred EEEEEcCCCCChHHHHHHHh------CCceeeecCCCCc---e----------EEeEEEE----------------EeCC
Q 018949 117 YVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT---T----------RHRILGI----------------CSGP 161 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~---t----------~~~~~~~----------------~~~~ 161 (348)
.|+++|++||||||.+-+|. +.++..++..... . ....... ...+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 69999999999999998764 3333332211110 0 0000000 0123
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
+..+.++||||........+.. + ..+.... ..+-+++|++++.+..... .+...... .+ +-=+++||.|...
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~e-l-~~~~~~~-~~~~~~LVlsa~~~~~~~~-~~~~~~~~--~~-~~~lIlTKlDet~ 154 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEE-L-KKLLEAL-NPDEVHLVLSATMGQEDLE-QALAFYEA--FG-IDGLILTKLDETA 154 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHH-H-HHHHHHH-SSSEEEEEEEGGGGGHHHH-HHHHHHHH--SS-TCEEEEESTTSSS
T ss_pred CCCEEEEecCCcchhhHHHHHH-H-HHHhhhc-CCccceEEEecccChHHHH-HHHHHhhc--cc-CceEEEEeecCCC
Confidence 4679999999965433222221 1 2222323 6778999999987665544 33333332 12 2356799999864
No 396
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.96 E-value=2.6e-05 Score=66.59 Aligned_cols=56 Identities=27% Similarity=0.325 Sum_probs=41.5
Q ss_pred cEEEEEecCCCCCchHHHHHHHh--cccccCCCCEEEEEeccCCCChhhHHHHHHHHHhc
Q 018949 197 DCIVVLVDACKAPERIDEILEEG--VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF 254 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~--~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~ 254 (348)
|++++|+|+..+.......+.+. +.. .++|+|+|+||+|+.+...+......+...
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~--~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~ 58 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAG--GNKKLVLVLNKIDLVPKENVEKWLKYLRRE 58 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhcc--CCCCEEEEEehhhcCCHHHHHHHHHHHHhh
Confidence 78999999988765544555555 333 568999999999998877766666666554
No 397
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.95 E-value=4.6e-05 Score=63.36 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=34.5
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccC
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~D 237 (348)
++.+.++||||..... ...+..||.+++|+...-.... . +.+. .. ...--++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~~------------~~~~~~Ad~~ivv~tpe~~D~y--~-~~k~-~~--~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQSE------------VDIASMADTTVVVMAPGAGDDI--Q-AIKA-GI--MEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChhh------------hhHHHhCCEEEEEECCCchhHH--H-Hhhh-hH--hhhcCEEEEeCCC
Confidence 5679999999964321 1235788999998877622111 1 1111 01 2233488999998
No 398
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=0.00012 Score=72.35 Aligned_cols=144 Identities=19% Similarity=0.263 Sum_probs=74.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC--------CceeeecCCCCce-----------EE--eEEEEE----------eCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG--------QKLSIVTNKPQTT-----------RH--RILGIC----------SGPE 162 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~--------~~~~~~~~~~~~t-----------~~--~~~~~~----------~~~~ 162 (348)
+...|+|+|++|+||||++..|.. .++..++..+... .. ...... ...+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 345899999999999999988753 2233222211100 00 001000 1235
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 242 (348)
+.++|+||||.......... .+ ...... . ....++|++++.........+..+ . ...+.-+|+||+|....
T Consensus 429 ~DLVLIDTaG~s~~D~~l~e-eL-~~L~aa-~-~~a~lLVLpAtss~~Dl~eii~~f-~---~~~~~gvILTKlDEt~~- 499 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAA-QL-NWLRAA-R-QVTSLLVLPANAHFSDLDEVVRRF-A---HAKPQGVVLTKLDETGR- 499 (559)
T ss_pred CCEEEecCCCcchhhHHHHH-HH-HHHHHh-h-cCCcEEEEECCCChhHHHHHHHHH-H---hhCCeEEEEecCcCccc-
Confidence 67999999997542211111 11 112111 1 234677788876555544443332 2 22467799999997532
Q ss_pred hHHHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 243 EIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 243 ~~~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
.-..+....... .|+..++ +|+++
T Consensus 500 -lG~aLsv~~~~~--LPI~yvt--~GQ~V 523 (559)
T PRK12727 500 -FGSALSVVVDHQ--MPITWVT--DGQRV 523 (559)
T ss_pred -hhHHHHHHHHhC--CCEEEEe--CCCCc
Confidence 223333333322 2555554 55655
No 399
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.89 E-value=0.00029 Score=59.92 Aligned_cols=73 Identities=15% Similarity=0.235 Sum_probs=41.3
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
+..+.++||||........+... ..... ....|.+++|+|+...... ........+. .+ ..-+|+||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l--~~l~~-~~~~~~~~lVv~~~~~~~~-~~~~~~~~~~--~~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEEL--KKIKR-VVKPDEVLLVVDAMTGQDA-VNQAKAFNEA--LG-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHH--HHHHh-hcCCCeEEEEEECCCChHH-HHHHHHHHhh--CC-CCEEEEECCcCCCC
Confidence 45689999999643211122111 11111 2358999999999654332 2334433333 22 35678899998653
No 400
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.89 E-value=3.6e-05 Score=73.29 Aligned_cols=119 Identities=19% Similarity=0.251 Sum_probs=64.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC------CceeeecCCCCc--------e-----EEeEEEE------------Ee-CCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQT--------T-----RHRILGI------------CS-GPE 162 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~~--------t-----~~~~~~~------------~~-~~~ 162 (348)
+..|+++|++|+||||++..|.. .++..++..+.. + ....... .. ..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 45899999999999999999852 223322222110 0 0000000 01 113
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
..++|+||||........+... ..+.. ....+.+++|+|++.........+. .+.. . ..-=+++||.|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL--~~~lk-~~~PdevlLVLsATtk~~d~~~i~~-~F~~--~-~idglI~TKLDET~ 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEM--IETMG-QVEPDYICLTLSASMKSKDMIEIIT-NFKD--I-HIDGIVFTKFDETA 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHH--HHHHh-hcCCCeEEEEECCccChHHHHHHHH-HhcC--C-CCCEEEEEcccCCC
Confidence 6799999999644322222221 11111 1345778999998765544443333 2222 1 22357899999764
No 401
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=8.2e-05 Score=66.66 Aligned_cols=129 Identities=16% Similarity=0.225 Sum_probs=76.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee---cCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhh-----hhhh----H
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV---TNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKK-----IHML----D 182 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~---~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~-----~~~l----~ 182 (348)
.|..+|.+|.|||||++.|.+.++... ...|..........+. .-...+.++||.|+++.- +..+ .
T Consensus 44 NilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdyid 123 (406)
T KOG3859|consen 44 NILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDYID 123 (406)
T ss_pred EEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHHHHH
Confidence 799999999999999999998876521 1111111111111111 113568999999997631 1111 1
Q ss_pred H----HH-----HHHHHhhc--cCccEEEEEecCCC-CCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHH
Q 018949 183 S----MM-----MKNVRSAG--INADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (348)
Q Consensus 183 ~----~~-----~~~~~~~~--~~ad~iv~VvD~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~ 248 (348)
. .+ .++.+..+ .+.++|+|.+..+. +....+......+. .++.+|-|+-|.|.....++..+.
T Consensus 124 aQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld---skVNIIPvIAKaDtisK~eL~~FK 198 (406)
T KOG3859|consen 124 AQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD---SKVNIIPVIAKADTISKEELKRFK 198 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh---hhhhhHHHHHHhhhhhHHHHHHHH
Confidence 1 11 11222223 35688999888764 44555554444433 457788888999998877665443
No 402
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.80 E-value=7.1e-05 Score=81.82 Aligned_cols=123 Identities=24% Similarity=0.252 Sum_probs=71.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeec-------CCCCceEEeEEEEEeCCCeeEEEEeCCCCchh------hhhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-------NKPQTTRHRILGICSGPEYQMILYDTPGIIEK------KIHM 180 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~------~~~~ 180 (348)
.-|=.+|+|++|+||||+++.- |-.+.... ...+.|++ +.-.+. ..-+++||+|-.-. ....
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~---~~avliDtaG~y~~~~~~~~~~~~ 184 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFT---DEAVLIDTAGRYTTQDSDPEEDAA 184 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEec---CCEEEEcCCCccccCCCcccccHH
Confidence 3346899999999999999986 44432211 01112222 111122 23679999994211 1112
Q ss_pred hHHHHHHHHHhh--ccCccEEEEEecCCCCCc-----------hHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 181 LDSMMMKNVRSA--GINADCIVVLVDACKAPE-----------RIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 181 l~~~~~~~~~~~--~~~ad~iv~VvD~~~~~~-----------~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
....+.....++ -.-.++||+++|+.+-.. .....+.++...++...|+.||+||+|+...
T Consensus 185 ~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 185 AWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 233344444333 245799999999864321 1122233344445678999999999998753
No 403
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.80 E-value=6.3e-05 Score=71.42 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=61.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCc--------eeeecCCC---Cce----------EEeEEEE----------EeCCCe
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQK--------LSIVTNKP---QTT----------RHRILGI----------CSGPEY 163 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~--------~~~~~~~~---~~t----------~~~~~~~----------~~~~~~ 163 (348)
...|++||++||||||.+-.|...- +++++... |.- ..+...+ .....+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 5589999999999999998764221 22211110 000 0001111 112345
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCE-EEEEeccCCCC
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDLIK 240 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~NK~Dl~~ 240 (348)
.++|+||.|..+. +.....-++.+.... ...-+.+|++++.....+.+.+..+ +. .|+ =+++||.|-..
T Consensus 283 d~ILVDTaGrs~~--D~~~i~el~~~~~~~-~~i~~~Lvlsat~K~~dlkei~~~f-~~----~~i~~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQY--DKEKIEELKELIDVS-HSIEVYLVLSATTKYEDLKEIIKQF-SL----FPIDGLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCcc--CHHHHHHHHHHHhcc-ccceEEEEEecCcchHHHHHHHHHh-cc----CCcceeEEEcccccC
Confidence 7999999995432 222222223333333 2334566777776555554444333 22 232 46789999653
No 404
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=0.00026 Score=67.24 Aligned_cols=120 Identities=14% Similarity=0.127 Sum_probs=63.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC------CceeeecCCCCce-------------EEeEEEEEe-------------CC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTT-------------RHRILGICS-------------GP 161 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~~t-------------~~~~~~~~~-------------~~ 161 (348)
+...|+++|++|+||||++..+.. .++..++..+... ........+ ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 344799999999999999998752 2333332222111 001111100 13
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
++.++++||||..+.....+... ..... ....+.+++|++++.........+. .... --+--+|+||.|-..
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL--~~l~~-~~~p~~~~LVLsag~~~~d~~~i~~-~f~~---l~i~glI~TKLDET~ 356 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEI--SAYTD-VVHPDLTCFTFSSGMKSADVMTILP-KLAE---IPIDGFIITKMDETT 356 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHH--HHHhh-ccCCceEEEECCCcccHHHHHHHHH-hcCc---CCCCEEEEEcccCCC
Confidence 46899999999644222222211 11212 1245777888887544433333222 2222 123367899999764
No 405
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=0.00033 Score=67.23 Aligned_cols=121 Identities=19% Similarity=0.219 Sum_probs=65.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC----------CceeeecCCCCc-----------e--EEeEEEE----------EeC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG----------QKLSIVTNKPQT-----------T--RHRILGI----------CSG 160 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~----------~~~~~~~~~~~~-----------t--~~~~~~~----------~~~ 160 (348)
++..|+++|++|+||||++..+.. .++..++..+.. . ....... -..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 345899999999999999988752 223322222110 0 0011111 012
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
.++.+.++||+|..+.....+.. + ..+........-+++|+|++.+.....+.+.... . --+-=+++||.|-..
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~e-l-~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~-~---~~~~~~I~TKlDet~ 326 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAE-M-KELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFS-P---FSYKTVIFTKLDETT 326 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHH-H-HHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhc-C---CCCCEEEEEeccCCC
Confidence 45689999999964321111111 1 1222222222358899999887665554443332 1 123357899999754
No 406
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.00017 Score=69.36 Aligned_cols=120 Identities=16% Similarity=0.163 Sum_probs=64.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC-------ceeeecCCCCce-----------E--EeEEEE---------EeCCCeeE
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ-------KLSIVTNKPQTT-----------R--HRILGI---------CSGPEYQM 165 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~-------~~~~~~~~~~~t-----------~--~~~~~~---------~~~~~~~~ 165 (348)
...++++|++||||||++..|... ++..++..+..+ . ...... +...+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 346999999999999999988632 222222111000 0 000000 11235679
Q ss_pred EEEeCCCCchhhhhhhHHHHHHHHHhhcc--CccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 166 ILYDTPGIIEKKIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 166 ~l~DtpG~~~~~~~~l~~~~~~~~~~~~~--~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
.++||||..+.....+... ..+..... ...-+++|+|++.+........... ... -+-=+|+||.|-..
T Consensus 303 VLIDTaGr~~rd~~~l~eL--~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f-~~~---~~~glIlTKLDEt~ 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERM--QSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY-ESL---NYRRILLTKLDEAD 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHH--HHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh-cCC---CCCEEEEEcccCCC
Confidence 9999999754322222221 22222221 2446889999987765554443332 321 23357899999754
No 407
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.77 E-value=0.00019 Score=70.66 Aligned_cols=147 Identities=18% Similarity=0.259 Sum_probs=72.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC--------ceeeecCCCC-ce----------EE--eEEE----------EEeCCCe
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ--------KLSIVTNKPQ-TT----------RH--RILG----------ICSGPEY 163 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~--------~~~~~~~~~~-~t----------~~--~~~~----------~~~~~~~ 163 (348)
...++++|++||||||++..|.+. ++..+...+. .+ .. .... .....+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~ 335 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNK 335 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCC
Confidence 347999999999999999987632 2222221111 00 00 0000 0112345
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE 243 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~ 243 (348)
.+.++||+|..+... .+... .... .......-.++|+|++.......+....+ .. ...--+|+||.|-...
T Consensus 336 d~VLIDTaGr~~~d~-~~~e~-~~~l-~~~~~p~e~~LVLdAt~~~~~l~~i~~~f-~~---~~~~g~IlTKlDet~~-- 406 (484)
T PRK06995 336 HIVLIDTIGMSQRDR-MVSEQ-IAML-HGAGAPVKRLLLLNATSHGDTLNEVVQAY-RG---PGLAGCILTKLDEAAS-- 406 (484)
T ss_pred CeEEeCCCCcChhhH-HHHHH-HHHH-hccCCCCeeEEEEeCCCcHHHHHHHHHHh-cc---CCCCEEEEeCCCCccc--
Confidence 689999999644221 11111 1111 11111233788999976654443333222 22 2234577899996532
Q ss_pred HHHHHHHHHhcCCCCeEEEecCCCCCCH-HHH
Q 018949 244 IAKKLEWYEKFTDVDEVIPVSAKYGHGV-EDI 274 (348)
Q Consensus 244 ~~~~~~~~~~~~~~~~i~~vSA~~g~gi-~eL 274 (348)
.-..+...... + .|+..++ +|++| ++|
T Consensus 407 ~G~~l~i~~~~-~-lPI~yvt--~GQ~VPeDL 434 (484)
T PRK06995 407 LGGALDVVIRY-K-LPLHYVS--NGQRVPEDL 434 (484)
T ss_pred chHHHHHHHHH-C-CCeEEEe--cCCCChhhh
Confidence 11222222222 1 2555554 67777 554
No 408
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.00011 Score=71.08 Aligned_cols=120 Identities=19% Similarity=0.255 Sum_probs=63.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC--------ceeeecCCC----------------CceEEeEEE-------EEeCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ--------KLSIVTNKP----------------QTTRHRILG-------ICSGPE 162 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~--------~~~~~~~~~----------------~~t~~~~~~-------~~~~~~ 162 (348)
+..+|+++|++|+||||++..|.+. +...+.... +........ .....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 4458999999999999999987642 111111000 000000000 011234
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
..+.++||+|..+.... +...+ ..+ .......-.++|+|++.........+..+ .. . -.-=+++||.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~-~~~~l-~~l-~~~~~~~~~~LVl~at~~~~~~~~~~~~f-~~--~-~~~~~I~TKlDEt~ 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQM-LAEQI-AML-SQCGTQVKHLLLLNATSSGDTLDEVISAY-QG--H-GIHGCIITKVDEAA 340 (420)
T ss_pred CCEEEecCCCCCcchHH-HHHHH-HHH-hccCCCceEEEEEcCCCCHHHHHHHHHHh-cC--C-CCCEEEEEeeeCCC
Confidence 56899999996542211 11111 111 11223456789999987665554443332 22 1 22357899999764
No 409
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.73 E-value=0.00053 Score=64.39 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=47.8
Q ss_pred EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCch-----HH-------HHHHHhccc-c
Q 018949 157 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER-----ID-------EILEEGVGD-H 223 (348)
Q Consensus 157 ~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~-----~~-------~~~~~~~~~-~ 223 (348)
.+..++..+.++|.+|...+ +..+...+.++++||||++.+.-.+. .. ..+...+.. .
T Consensus 189 ~F~~k~~~f~~~DvGGQRse---------RrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 189 EFTIKGLKFRMFDVGGQRSE---------RKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred EEEeCCCceEEEeCCCcHHH---------hhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 35566778999999994322 23455568999999999998753211 01 111112211 1
Q ss_pred cCCCCEEEEEeccCCC
Q 018949 224 KDKLPILLVLNKKDLI 239 (348)
Q Consensus 224 ~~~~p~ivv~NK~Dl~ 239 (348)
..+.++|+++||.|+-
T Consensus 260 F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 260 FANTSIILFLNKKDLF 275 (354)
T ss_pred cccCcEEEEeecHHHH
Confidence 2678999999999985
No 410
>PRK13695 putative NTPase; Provisional
Probab=97.68 E-value=0.002 Score=54.84 Aligned_cols=88 Identities=16% Similarity=0.206 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhhccCccEEEEEec---CCCCCchH-HHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCC
Q 018949 181 LDSMMMKNVRSAGINADCIVVLVD---ACKAPERI-DEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD 256 (348)
Q Consensus 181 l~~~~~~~~~~~~~~ad~iv~VvD---~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~ 256 (348)
+...........+..+++ +++| ........ ...+...+ . .+.|++++.||.... .....+....+
T Consensus 82 le~~~~~l~~~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~-~--~~~~~i~v~h~~~~~------~~~~~i~~~~~ 150 (174)
T PRK13695 82 LERIGIPALERALEEADV--IIIDEIGKMELKSPKFVKAVEEVL-D--SEKPVIATLHRRSVH------PFVQEIKSRPG 150 (174)
T ss_pred HHHHHHHHHHhccCCCCE--EEEECCCcchhhhHHHHHHHHHHH-h--CCCeEEEEECchhhH------HHHHHHhccCC
Confidence 344444555556678887 5777 33222222 22233333 3 678999999985321 12233333333
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
. .++.+ +.+|=+++...|.+.++
T Consensus 151 ~-~i~~~---~~~~r~~~~~~~~~~~~ 173 (174)
T PRK13695 151 G-RVYEL---TPENRDSLPFEILNRLK 173 (174)
T ss_pred c-EEEEE---cchhhhhHHHHHHHHHh
Confidence 2 45555 56666788888777553
No 411
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.67 E-value=0.00016 Score=70.55 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=62.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhC--------CceeeecCCCCce-------------EEeEEEE----------EeCCCee
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG--------QKLSIVTNKPQTT-------------RHRILGI----------CSGPEYQ 164 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~--------~~~~~~~~~~~~t-------------~~~~~~~----------~~~~~~~ 164 (348)
..++|+|++||||||++..|.. .++..++..+... ....... -...+..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 4799999999999998877632 2233332222100 0000000 0123467
Q ss_pred EEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
++++||||........+.. + ..+........-+++|++++.........+.. +.. .+ +--+++||.|-..
T Consensus 302 lVlIDt~G~~~~d~~~~~~-L-~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~-f~~--~~-~~~vI~TKlDet~ 371 (424)
T PRK05703 302 VILIDTAGRSQRDKRLIEE-L-KALIEFSGEPIDVYLVLSATTKYEDLKDIYKH-FSR--LP-LDGLIFTKLDETS 371 (424)
T ss_pred EEEEeCCCCCCCCHHHHHH-H-HHHHhccCCCCeEEEEEECCCCHHHHHHHHHH-hCC--CC-CCEEEEecccccc
Confidence 9999999964432222211 1 12222122345677888887655554443332 222 11 2258899999754
No 412
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.66 E-value=4.2e-05 Score=66.96 Aligned_cols=75 Identities=25% Similarity=0.325 Sum_probs=40.3
Q ss_pred eEEEEeCCCCchh--hhhhhHHHHHHHHHhhccCccEEEEEecCC---CCCchHHHHHHHhcccccCCCCEEEEEeccCC
Q 018949 164 QMILYDTPGIIEK--KIHMLDSMMMKNVRSAGINADCIVVLVDAC---KAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 164 ~~~l~DtpG~~~~--~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
.+.++|+||.++- ....+...+. ...+ ..-.-++|.++|+- ++..-....+..+.-......|-|=|+.|+|+
T Consensus 98 ~Y~lFDcPGQVELft~h~~l~~I~~-~Lek-~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 98 HYVLFDCPGQVELFTHHDSLNKIFR-KLEK-LDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADL 175 (290)
T ss_pred cEEEEeCCCcEEEEeccchHHHHHH-HHHH-cCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHH
Confidence 5899999997652 2234444332 2222 33334566677762 22222222222222222256889999999998
Q ss_pred CC
Q 018949 239 IK 240 (348)
Q Consensus 239 ~~ 240 (348)
..
T Consensus 176 ~~ 177 (290)
T KOG1533|consen 176 LK 177 (290)
T ss_pred HH
Confidence 64
No 413
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.64 E-value=0.00051 Score=67.03 Aligned_cols=119 Identities=18% Similarity=0.264 Sum_probs=62.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCce-------------EEeEEEEE--------------eC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-------------RHRILGIC--------------SG 160 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t-------------~~~~~~~~--------------~~ 160 (348)
++..|+++|.+|+||||++..|. |.++..++..+... ........ ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 34589999999999999998874 22333222211100 00000000 01
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCC
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLI 239 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~ 239 (348)
....++++||||..+.....+.. + ... .....+|.+++|+|++.+. ........ +. ...+ .-+|+||.|..
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~E-l-~~l-~~~~~pdevlLVvda~~gq-~av~~a~~-F~---~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEE-M-KEI-KEAVKPDEVLLVIDATIGQ-QAKNQAKA-FH---EAVGIGGIIITKLDGT 245 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHH-H-HHH-HHHhcccceeEEEeccccH-HHHHHHHH-HH---hcCCCCEEEEecccCC
Confidence 22479999999964422221111 1 111 2234688999999997763 22222222 11 2233 35788999975
Q ss_pred C
Q 018949 240 K 240 (348)
Q Consensus 240 ~ 240 (348)
.
T Consensus 246 a 246 (437)
T PRK00771 246 A 246 (437)
T ss_pred C
Confidence 3
No 414
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.60 E-value=0.0011 Score=54.48 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=56.7
Q ss_pred EEcCCCCChHHHHHHHh------CCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 120 VLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 120 i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
.-|.+|+||||+.-.+. |.....+...+..+.. .+.+.++|||+..... ....+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~---------~yd~VIiD~p~~~~~~-----------~~~~l 64 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL---------DYDYIIIDTGAGISDN-----------VLDFF 64 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC---------CCCEEEEECCCCCCHH-----------HHHHH
Confidence 34579999999877654 2222222222111111 1669999999843211 22346
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
..+|.+++|++.+...-.......+.+.......++.+|+|+++..
T Consensus 65 ~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 65 LAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred HhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 7899999999986443222122222322222456788999999743
No 415
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.55 E-value=0.00031 Score=61.83 Aligned_cols=45 Identities=29% Similarity=0.248 Sum_probs=35.0
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCC-CCEEEEEeccCCC
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLI 239 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~NK~Dl~ 239 (348)
.+.+|++|.|+|.+...-...+.+.++..+ .+ .++.+|+||+|-.
T Consensus 153 ~~~vD~vivVvDpS~~sl~taeri~~L~~e--lg~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPSYKSLRTAERIKELAEE--LGIKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCcHHHHHHHHHHHHHHHH--hCCceEEEEEeeccch
Confidence 578999999999986554445566666666 45 8899999999965
No 416
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.53 E-value=0.0054 Score=51.07 Aligned_cols=148 Identities=21% Similarity=0.242 Sum_probs=76.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhC---Cc-eeeecCCCCceEEeEEEEEe--CCCeeEEEEeCC-C------------Cchh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG---QK-LSIVTNKPQTTRHRILGICS--GPEYQMILYDTP-G------------IIEK 176 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~---~~-~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~Dtp-G------------~~~~ 176 (348)
.+|+|.|+||+||||++.++.. .+ +... -.....+. .....|.++|+. | ..-.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg--------Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvG 77 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVG--------GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVG 77 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceee--------eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccc
Confidence 3899999999999999998752 11 1110 00000011 111224444443 1 0000
Q ss_pred ----hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHHHHHHHH
Q 018949 177 ----KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWY 251 (348)
Q Consensus 177 ----~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~ 251 (348)
.-..++........+++..||++| +|=-.+.+-....+.+.+.. +..++|+|.++-+-+.- ...+.+
T Consensus 78 kY~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~------P~v~~i 149 (179)
T COG1618 78 KYGVNVEGLEEIAIPALRRALEEADVII--IDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRH------PLVQRI 149 (179)
T ss_pred eEEeeHHHHHHHhHHHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCC------hHHHHh
Confidence 112345556666777788889765 45433322222222222222 12578988888876642 123334
Q ss_pred HhcCCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 252 EKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 252 ~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
+...+. +++ .+.+|=+.++..|...+..
T Consensus 150 k~~~~v--~v~---lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 150 KKLGGV--YVF---LTPENRNRILNEILSVLKG 177 (179)
T ss_pred hhcCCE--EEE---EccchhhHHHHHHHHHhcc
Confidence 433332 222 5667777888888776643
No 417
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.52 E-value=0.00096 Score=63.30 Aligned_cols=75 Identities=19% Similarity=0.152 Sum_probs=50.0
Q ss_pred EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC------------chHHHHHHHhccc-
Q 018949 156 GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP------------ERIDEILEEGVGD- 222 (348)
Q Consensus 156 ~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~------------~~~~~~~~~~~~~- 222 (348)
..+..++..+.+||.+|. ...+ ..+..++..+++|+||+|.++-. .+....+..++..
T Consensus 177 ~~f~~~~~~~~~~DvgGq--r~~R-------~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~ 247 (342)
T smart00275 177 TAFIVKKLFFRMFDVGGQ--RSER-------KKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR 247 (342)
T ss_pred EEEEECCeEEEEEecCCc--hhhh-------hhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc
Confidence 345566788999999994 2222 34556689999999999998531 1112223333322
Q ss_pred ccCCCCEEEEEeccCCC
Q 018949 223 HKDKLPILLVLNKKDLI 239 (348)
Q Consensus 223 ~~~~~p~ivv~NK~Dl~ 239 (348)
...+.|++|++||.|+.
T Consensus 248 ~~~~~piil~~NK~D~~ 264 (342)
T smart00275 248 WFANTSIILFLNKIDLF 264 (342)
T ss_pred cccCCcEEEEEecHHhH
Confidence 12679999999999985
No 418
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.51 E-value=0.001 Score=60.84 Aligned_cols=119 Identities=20% Similarity=0.255 Sum_probs=65.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC------ceeeecCCCCc--------e-----EEeEEEEE-------------eCCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT--------T-----RHRILGIC-------------SGPE 162 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~------~~~~~~~~~~~--------t-----~~~~~~~~-------------~~~~ 162 (348)
..+++++|++|+||||++..+.+. ....++..+.. + ........ ...+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 348999999999999999887532 22222211110 0 00000000 1125
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
..+.++||||..+.....+... . .... ....+-+++|+|++.........+..+ .. -.+-=+++||.|-..
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el-~-~~~~-~~~~~~~~LVl~a~~~~~d~~~~~~~f-~~---~~~~~~I~TKlDet~ 225 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEM-I-ETMG-QVEPDYICLTLSASMKSKDMIEIITNF-KD---IHIDGIVFTKFDETA 225 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHH-H-HHHh-hhCCCeEEEEEcCccCHHHHHHHHHHh-CC---CCCCEEEEEeecCCC
Confidence 6899999999654222222221 1 1222 235567899999976655544443333 22 123457899999764
No 419
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.00049 Score=60.63 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=68.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceee----ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSI----VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~----~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
++|.++|..-+||||+-.....+--.. ...+...|++. +...-..+.+||.||..+.-.....- ..
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~----is~sfinf~v~dfPGQ~~~Fd~s~D~------e~ 97 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDH----ISNSFINFQVWDFPGQMDFFDPSFDY------EM 97 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhh----hhhhhcceEEeecCCccccCCCccCH------HH
Confidence 369999999999999987665432110 11111122221 12233569999999965422122211 12
Q ss_pred hccCccEEEEEecCCCCCchHHHHHH-Hhccc--ccCCCCEEEEEeccCCCCh
Q 018949 192 AGINADCIVVLVDACKAPERIDEILE-EGVGD--HKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~-~~~~~--~~~~~p~ivv~NK~Dl~~~ 241 (348)
.++.+-+++||+|+.+...+....+. -..+. ..+++.+=|.+.|.|-...
T Consensus 98 iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 98 IFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred HHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 25788999999999765433222222 22222 2367888899999998754
No 420
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.50 E-value=0.00058 Score=64.31 Aligned_cols=75 Identities=23% Similarity=0.216 Sum_probs=55.1
Q ss_pred HHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCC
Q 018949 183 SMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV 257 (348)
Q Consensus 183 ~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 257 (348)
..+...++..+..+|+||.|+|+.++...-...+.+.......++..|+|+||+|+++.+.++..+..++...+.
T Consensus 134 kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~pt 208 (435)
T KOG2484|consen 134 KAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPT 208 (435)
T ss_pred HHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCc
Confidence 345566777789999999999999877333333333332222458899999999999999888888888876654
No 421
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.47 E-value=0.00039 Score=47.34 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=25.7
Q ss_pred ccCccEEEEEecCCCCC----chHHHHHHHhcccccCCCCEEEEEeccC
Q 018949 193 GINADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~----~~~~~~~~~~~~~~~~~~p~ivv~NK~D 237 (348)
.+-.++|+|++|.+... +.+. .+...++....++|+++|+||+|
T Consensus 11 ~hL~~~ilfi~D~Se~CGysie~Q~-~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 11 AHLADAILFIIDPSEQCGYSIEEQL-SLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp GGT-SEEEEEE-TT-TTSS-HHHHH-HHHHHHHHHTTTS-EEEEE--TT
T ss_pred HhhcceEEEEEcCCCCCCCCHHHHH-HHHHHHHHHcCCCCEEEEEeccC
Confidence 45678999999998654 2222 33344444436899999999998
No 422
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.44 E-value=0.0023 Score=62.39 Aligned_cols=72 Identities=18% Similarity=0.192 Sum_probs=38.5
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
.++.++++||||..+.....+ ..+ ..+.. .-.+|-+++|+|++.+. ............ -+ ..=+|+||.|..
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~-~eL-~~i~~-~~~p~e~lLVvda~tgq-~~~~~a~~f~~~--v~-i~giIlTKlD~~ 252 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELM-EEL-AAIKE-ILNPDEILLVVDAMTGQ-DAVNTAKTFNER--LG-LTGVVLTKLDGD 252 (428)
T ss_pred cCCCEEEEeCCCccccCHHHH-HHH-HHHHH-hhCCceEEEEEeccchH-HHHHHHHHHHhh--CC-CCEEEEeCccCc
Confidence 346799999999543221111 111 11222 23578899999997543 222222222211 11 235779999964
No 423
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.40 E-value=0.00042 Score=71.46 Aligned_cols=122 Identities=15% Similarity=0.226 Sum_probs=63.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC--------ceeeecCCCCc---e--------EE--eEEEE----------EeCCCe
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ--------KLSIVTNKPQT---T--------RH--RILGI----------CSGPEY 163 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~--------~~~~~~~~~~~---t--------~~--~~~~~----------~~~~~~ 163 (348)
...|+++|++||||||++..|.+. ++..++..... . .. ..... -...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 347999999999999999988642 22221111100 0 00 00000 012345
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
.++|+||||..+.... +.... .... .....+-+++|+|++.......+.+..+......+ +-=+|+||.|-..
T Consensus 265 D~VLIDTAGRs~~d~~-l~eel-~~l~-~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~-i~glIlTKLDEt~ 337 (767)
T PRK14723 265 HLVLIDTVGMSQRDRN-VSEQI-AMLC-GVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGED-VDGCIITKLDEAT 337 (767)
T ss_pred CEEEEeCCCCCccCHH-HHHHH-HHHh-ccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCC-CCEEEEeccCCCC
Confidence 7999999996442212 21211 1111 12346678999999865444333332221110011 2357899999764
No 424
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.38 E-value=0.0017 Score=50.71 Aligned_cols=95 Identities=24% Similarity=0.243 Sum_probs=54.3
Q ss_pred EEEEc-CCCCChHHHHHHHh-------CCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHH
Q 018949 118 VAVLG-KPNVGKSTLANQMI-------GQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (348)
Q Consensus 118 v~i~G-~~~~GKSsLin~l~-------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~ 189 (348)
|+++| ..|+||||+.-.|. |.+...+...+..+ ..+.++|||+..... .
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~------------~D~IIiDtpp~~~~~-----------~ 58 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFG------------DDYVVVDLGRSLDEV-----------S 58 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCC------------CCEEEEeCCCCcCHH-----------H
Confidence 44544 68999999776653 22332222222211 158999999854311 2
Q ss_pred HhhccCccEEEEEecCCCCCchHHHHHHHhccccc-C-CCCEEEEEec
Q 018949 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-D-KLPILLVLNK 235 (348)
Q Consensus 190 ~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~-~-~~p~ivv~NK 235 (348)
...+..+|.++++++.+.........+.+.++..+ . ...+.+|+|+
T Consensus 59 ~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 59 LAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 23357889999999886544333333344333322 2 3567788886
No 425
>PRK10867 signal recognition particle protein; Provisional
Probab=97.36 E-value=0.0019 Score=62.89 Aligned_cols=118 Identities=18% Similarity=0.251 Sum_probs=60.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHh-------CCceeeecCCCCce-----------EE--eEEEE----------------E
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI-------GQKLSIVTNKPQTT-----------RH--RILGI----------------C 158 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~-------~~~~~~~~~~~~~t-----------~~--~~~~~----------------~ 158 (348)
+..|+++|.+|+||||++-.|. |.++..++..+... .. ..... .
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a 179 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEA 179 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHH
Confidence 4479999999999999776653 33343332221110 00 00000 0
Q ss_pred eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCC
Q 018949 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
...++.++++||||..+.....+ ..+ ..+.. .-..+-+++|+|++.+ +............ .+ ..-+|+||.|.
T Consensus 180 ~~~~~DvVIIDTaGrl~~d~~lm-~eL-~~i~~-~v~p~evllVlda~~g-q~av~~a~~F~~~--~~-i~giIlTKlD~ 252 (433)
T PRK10867 180 KENGYDVVIVDTAGRLHIDEELM-DEL-KAIKA-AVNPDEILLVVDAMTG-QDAVNTAKAFNEA--LG-LTGVILTKLDG 252 (433)
T ss_pred HhcCCCEEEEeCCCCcccCHHHH-HHH-HHHHH-hhCCCeEEEEEecccH-HHHHHHHHHHHhh--CC-CCEEEEeCccC
Confidence 12346799999999543221111 111 11212 2356778999998754 2222222222211 11 23578899996
Q ss_pred C
Q 018949 239 I 239 (348)
Q Consensus 239 ~ 239 (348)
.
T Consensus 253 ~ 253 (433)
T PRK10867 253 D 253 (433)
T ss_pred c
Confidence 4
No 426
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.32 E-value=0.00073 Score=65.54 Aligned_cols=81 Identities=22% Similarity=0.204 Sum_probs=61.0
Q ss_pred HHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEec
Q 018949 185 MMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVS 264 (348)
Q Consensus 185 ~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vS 264 (348)
+.++.++.++.+|+||.+||+.++.-.....+..+.+.....+..++++||.||..+.........+.... .++++.|
T Consensus 164 ~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~n--i~~vf~S 241 (562)
T KOG1424|consen 164 IWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNN--IPVVFFS 241 (562)
T ss_pred HHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcC--ceEEEEe
Confidence 45566677899999999999998874433445555555445678899999999999887776666665544 5888889
Q ss_pred CCC
Q 018949 265 AKY 267 (348)
Q Consensus 265 A~~ 267 (348)
|..
T Consensus 242 A~~ 244 (562)
T KOG1424|consen 242 ALA 244 (562)
T ss_pred ccc
Confidence 877
No 427
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.20 E-value=0.00062 Score=63.06 Aligned_cols=149 Identities=21% Similarity=0.285 Sum_probs=77.7
Q ss_pred CCccEEEEEcCCCCChHHHHHHHh------CCceeeecCCC----------------Cce-------EEeEEEE------
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKP----------------QTT-------RHRILGI------ 157 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~----------------~~t-------~~~~~~~------ 157 (348)
.++..|+++|-.|+||||.|-.|. |.++....... +.. .++....
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 345689999999999999998874 22222111111 000 0000000
Q ss_pred EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccE-----EEEEecCCCCCchH--HHHHHHhcccccCCCCEE
Q 018949 158 CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADC-----IVVLVDACKAPERI--DEILEEGVGDHKDKLPIL 230 (348)
Q Consensus 158 ~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~-----iv~VvD~~~~~~~~--~~~~~~~~~~~~~~~p~i 230 (348)
-...++.+.|+||+|-.+...+-+.. + +...+.+...+. +++|+|++.+.... .+.+.+...- -=
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~E-L-~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l------~G 288 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDE-L-KKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGL------DG 288 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHH-H-HHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcCC------ce
Confidence 11234679999999965544333322 2 223333344333 88888998876432 2333332221 14
Q ss_pred EEEeccCCCChh-hHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHH
Q 018949 231 LVLNKKDLIKPG-EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 231 vv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
+++||+|-...- -+-.+... .+ .|+.++. -|+++++|..
T Consensus 289 iIlTKlDgtAKGG~il~I~~~----l~-~PI~fiG--vGE~~~DL~~ 328 (340)
T COG0552 289 IILTKLDGTAKGGIILSIAYE----LG-IPIKFIG--VGEGYDDLRP 328 (340)
T ss_pred EEEEecccCCCcceeeeHHHH----hC-CCEEEEe--CCCChhhccc
Confidence 789999954321 11111111 22 2666664 5778887753
No 428
>PRK01889 GTPase RsgA; Reviewed
Probab=97.15 E-value=0.00031 Score=66.98 Aligned_cols=56 Identities=41% Similarity=0.565 Sum_probs=35.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeec-------CCCCceEEeEEEEEeCCCeeEEEEeCCCCch
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVT-------NKPQTTRHRILGICSGPEYQMILYDTPGIIE 175 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (348)
+++++|.+|+|||||+|.+++....... ....+|.......+..+ ..++||||+..
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~---~~l~DtpG~~~ 259 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSG---GLLIDTPGMRE 259 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCC---CeecCCCchhh
Confidence 7999999999999999999975432111 11123333322333222 35889999743
No 429
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.11 E-value=0.0024 Score=60.09 Aligned_cols=86 Identities=31% Similarity=0.331 Sum_probs=64.9
Q ss_pred HHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecC
Q 018949 186 MKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 186 ~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA 265 (348)
.....+.+..+|+|+.|+|+..+.......+..... +.|.++|+||+|+.+..........+....+. ..+.+|+
T Consensus 25 ~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~----~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~-~~~~v~~ 99 (322)
T COG1161 25 KRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK----EKPKLLVLNKADLAPKEVTKKWKKYFKKEEGI-KPIFVSA 99 (322)
T ss_pred HHHHHHhcccCCEEEEEEeccccccccCccHHHHHc----cCCcEEEEehhhcCCHHHHHHHHHHHHhcCCC-ccEEEEe
Confidence 345566689999999999999887665555555554 35669999999999988777777777766543 4588888
Q ss_pred CCCCCHHHHHH
Q 018949 266 KYGHGVEDIRD 276 (348)
Q Consensus 266 ~~g~gi~eL~~ 276 (348)
+.+.+...+..
T Consensus 100 ~~~~~~~~i~~ 110 (322)
T COG1161 100 KSRQGGKKIRK 110 (322)
T ss_pred ecccCccchHH
Confidence 88887777773
No 430
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.11 E-value=0.0044 Score=47.79 Aligned_cols=66 Identities=29% Similarity=0.438 Sum_probs=41.8
Q ss_pred EEEEc-CCCCChHHHHHHHhC------CceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 118 VAVLG-KPNVGKSTLANQMIG------QKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 118 v~i~G-~~~~GKSsLin~l~~------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
|+++| ..|+||||+...+.. .+...+...+ .+.+.++|+|+..... ..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~--------------~~d~viiD~p~~~~~~-----------~~ 56 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDP--------------QYDYIIIDTPPSLGLL-----------TR 56 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCC--------------CCCEEEEeCcCCCCHH-----------HH
Confidence 56777 689999998876543 1222111111 1569999999853311 12
Q ss_pred hhccCccEEEEEecCCCC
Q 018949 191 SAGINADCIVVLVDACKA 208 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~ 208 (348)
..+..+|.++++++.+..
T Consensus 57 ~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 57 NALAAADLVLIPVQPSPL 74 (104)
T ss_pred HHHHHCCEEEEeccCCHH
Confidence 335789999999988643
No 431
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.06 E-value=0.0039 Score=57.29 Aligned_cols=85 Identities=27% Similarity=0.318 Sum_probs=57.1
Q ss_pred cCccEEEEEecCCCCCch--HHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH--HHHHHHhcCCCCeEEEecCCCCC
Q 018949 194 INADCIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK--KLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~--~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
.+.|-+++|+.+..+.-. ....++-.+.. .++.-+||+||+|+.+..+... ....+.. .+ .+++.+|++++.
T Consensus 78 ~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~--~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~-~g-y~v~~~s~~~~~ 153 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA--GGIEPVIVLNKIDLLDDEEAAVKELLREYED-IG-YPVLFVSAKNGD 153 (301)
T ss_pred cccceEEEEEeccCCCCCHHHHHHHHHHHHH--cCCcEEEEEEccccCcchHHHHHHHHHHHHh-CC-eeEEEecCcCcc
Confidence 456777777777766522 22233333333 6777788899999998766542 2333332 33 378999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++|...+...+
T Consensus 154 ~~~~l~~~l~~~~ 166 (301)
T COG1162 154 GLEELAELLAGKI 166 (301)
T ss_pred cHHHHHHHhcCCe
Confidence 9999999887654
No 432
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.06 E-value=0.014 Score=49.50 Aligned_cols=111 Identities=20% Similarity=0.168 Sum_probs=59.7
Q ss_pred EEEE-cCCCCChHHHHHHHh------CCceeeecCCCC-ceEEeEE--------EEEeCCCeeEEEEeCCCCchhhhhhh
Q 018949 118 VAVL-GKPNVGKSTLANQMI------GQKLSIVTNKPQ-TTRHRIL--------GICSGPEYQMILYDTPGIIEKKIHML 181 (348)
Q Consensus 118 v~i~-G~~~~GKSsLin~l~------~~~~~~~~~~~~-~t~~~~~--------~~~~~~~~~~~l~DtpG~~~~~~~~l 181 (348)
|+++ +.+|+||||+.-.|. |.+...+...+. ....... ...+.-...+.++|||+-....
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~~---- 77 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIERG---- 77 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcHH----
Confidence 3444 479999999987753 344433322221 1111000 0000001169999999843211
Q ss_pred HHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 182 ~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
....+..+|.+|++++.+.........+.+.++.. ......+|+|++|...
T Consensus 78 -------~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~-~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 78 -------FITAIAPADEALLVTTPEISSLRDADRVKGLLEAL-GIKVVGVIVNRVRPDM 128 (179)
T ss_pred -------HHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHc-CCceEEEEEeCCcccc
Confidence 22335689999999988754433333344444431 2234678999998654
No 433
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.06 E-value=0.0044 Score=58.45 Aligned_cols=96 Identities=19% Similarity=0.123 Sum_probs=66.6
Q ss_pred HHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEe
Q 018949 184 MMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPV 263 (348)
Q Consensus 184 ~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~v 263 (348)
.........+..+|++|.|+|+.++.-.....+..+++...+.+.+|+|+||+||++..........+.+..+-. .|.-
T Consensus 202 RIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTi-AfHA 280 (572)
T KOG2423|consen 202 RIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTI-AFHA 280 (572)
T ss_pred HHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcce-eeeh
Confidence 345566677889999999999998875555666677776667788999999999998766555666655544321 2444
Q ss_pred cCCCCCCHHHHHHHHHH
Q 018949 264 SAKYGHGVEDIRDWILT 280 (348)
Q Consensus 264 SA~~g~gi~eL~~~i~~ 280 (348)
|-....|-..|++.+..
T Consensus 281 si~nsfGKgalI~llRQ 297 (572)
T KOG2423|consen 281 SINNSFGKGALIQLLRQ 297 (572)
T ss_pred hhcCccchhHHHHHHHH
Confidence 54445565666665544
No 434
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.0012 Score=70.82 Aligned_cols=119 Identities=22% Similarity=0.266 Sum_probs=65.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeee-------cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh--hhhhH----H
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIV-------TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLD----S 183 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~--~~~l~----~ 183 (348)
=-+|+|++|+||||++.. +|.++... ...++ |+++.- +-+..-+++||.|-.... ..... .
T Consensus 127 Wy~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~g-T~~cdw----wf~deaVlIDtaGry~~q~s~~~~~~~~W~ 200 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPG-TRNCDW----WFTDEAVLIDTAGRYITQDSADEVDRAEWL 200 (1188)
T ss_pred ceEEecCCCCCcchHHhc-ccccCcchhhhccccccCCC-CcccCc----ccccceEEEcCCcceecccCcchhhHHHHH
Confidence 478899999999999874 23322211 11222 333221 112347899999942211 11111 1
Q ss_pred HHHHHHH--hhccCccEEEEEecCCCCC----chH-------HHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 184 MMMKNVR--SAGINADCIVVLVDACKAP----ERI-------DEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 184 ~~~~~~~--~~~~~ad~iv~VvD~~~~~----~~~-------~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
.+....+ +..+-.++||+.+|+.+-. ... ...+.++...+....|++|++||.|+...
T Consensus 201 ~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 201 GFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 1222222 2245679999999986432 111 11122333334468999999999999864
No 435
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.00 E-value=0.0074 Score=45.17 Aligned_cols=71 Identities=23% Similarity=0.271 Sum_probs=44.0
Q ss_pred EEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCcc
Q 018949 118 VAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINAD 197 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad 197 (348)
+++.|.+|+||||+...+...-.. .+... ..++ .+.++|+||........ .......+|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v----~~~~----d~iivD~~~~~~~~~~~--------~~~~~~~~~ 60 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRV----LLID----DYVLIDTPPGLGLLVLL--------CLLALLAAD 60 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeE----EEEC----CEEEEeCCCCccchhhh--------hhhhhhhCC
Confidence 678899999999999887643110 01000 0111 58999999954322100 123356889
Q ss_pred EEEEEecCCCCC
Q 018949 198 CIVVLVDACKAP 209 (348)
Q Consensus 198 ~iv~VvD~~~~~ 209 (348)
.++++++.....
T Consensus 61 ~vi~v~~~~~~~ 72 (99)
T cd01983 61 LVIIVTTPEALA 72 (99)
T ss_pred EEEEecCCchhh
Confidence 999999887544
No 436
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.007 Score=57.02 Aligned_cols=92 Identities=23% Similarity=0.361 Sum_probs=53.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCC-------------ceEEeEEEE----------------Ee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQ-------------TTRHRILGI----------------CS 159 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~-------------~t~~~~~~~----------------~~ 159 (348)
+-.|.++|--|+||||.+-.+. |.+...+..... .++.++.+. +.
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK 180 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK 180 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH
Confidence 3379999999999999998874 223222211110 111122211 22
Q ss_pred CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC
Q 018949 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP 209 (348)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~ 209 (348)
.+++.++++||.|-++.. .++-..+.+ +.+ .-..|-+|||+|++-+.
T Consensus 181 ke~fdvIIvDTSGRh~qe-~sLfeEM~~-v~~-ai~Pd~vi~VmDasiGQ 227 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQE-ASLFEEMKQ-VSK-AIKPDEIIFVMDASIGQ 227 (483)
T ss_pred hcCCcEEEEeCCCchhhh-HHHHHHHHH-HHh-hcCCCeEEEEEeccccH
Confidence 345689999999954322 222222222 222 24689999999998765
No 437
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.81 E-value=0.0035 Score=61.28 Aligned_cols=151 Identities=15% Similarity=0.208 Sum_probs=90.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
.+++|+|..++|||+|+.+++...+.. ...|...++....++.....-+.+-|-.|..+. .+..-
T Consensus 31 lk~givg~~~sgktalvhr~ltgty~~-~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~a--------------Qft~w 95 (749)
T KOG0705|consen 31 LKLGIVGTSQSGKTALVHRYLTGTYTQ-DESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDA--------------QFCQW 95 (749)
T ss_pred hheeeeecccCCceeeeeeeccceecc-ccCCcCccceeeEEeeccceEeeeecccCCchh--------------hhhhh
Confidence 379999999999999999988766542 334444455555556666666777787773221 11345
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCCh----hhHHHHHHHHHhcCCCCeEEEecCCCC
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKP----GEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
.|++|||+...+.. +.+......+.... ...+|+++++++. .... ...+............+.+++++|.+|
T Consensus 96 vdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd-~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyG 174 (749)
T KOG0705|consen 96 VDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQD-HISAKRPRVITDDRARQLSAQMKRCSYYETCATYG 174 (749)
T ss_pred ccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcc-hhhcccccccchHHHHHHHHhcCccceeecchhhh
Confidence 67777777765433 22222222221111 1567777777753 3221 112222233333444567899999999
Q ss_pred CCHHHHHHHHHHhC
Q 018949 269 HGVEDIRDWILTKL 282 (348)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (348)
-++...|+.+...+
T Consensus 175 lnv~rvf~~~~~k~ 188 (749)
T KOG0705|consen 175 LNVERVFQEVAQKI 188 (749)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999998876543
No 438
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.58 E-value=0.0091 Score=47.68 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 018949 118 VAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~ 138 (348)
|.+.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 679999999999999998764
No 439
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.53 E-value=0.0018 Score=55.94 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=29.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG 156 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~ 156 (348)
.-|+|+|++|+|||||+++|+..........+.||+..-.+
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~g 45 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPG 45 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCC
Confidence 36999999999999999999876433233456667655433
No 440
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.38 E-value=0.0028 Score=55.71 Aligned_cols=38 Identities=32% Similarity=0.346 Sum_probs=25.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceE
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR 151 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~ 151 (348)
+...|+|+|++|+|||||++.|...........+.||+
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr 49 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTR 49 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCC
Confidence 44468899999999999999997543222233344444
No 441
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.37 E-value=0.0027 Score=56.55 Aligned_cols=23 Identities=43% Similarity=0.706 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.|+|+|++|||||||+|.+.|-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999998743
No 442
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.35 E-value=0.014 Score=53.86 Aligned_cols=111 Identities=11% Similarity=0.148 Sum_probs=65.2
Q ss_pred CCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh-------------
Q 018949 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK------------- 177 (348)
Q Consensus 111 ~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~------------- 177 (348)
+..|.+.++|+|++|.|||++++++...+... . .+.. ...++..+.+|.-.+..
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~-d~~~-----------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-S-DEDA-----------ERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCCC-C-CCCC-----------ccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 33466689999999999999999999866431 1 1111 12357777777532210
Q ss_pred ---hhhhHHHHHHHHHhhccCccEEEEEecCCCC----CchHHHHHHHhccccc--CCCCEEEEEec
Q 018949 178 ---IHMLDSMMMKNVRSAGINADCIVVLVDACKA----PERIDEILEEGVGDHK--DKLPILLVLNK 235 (348)
Q Consensus 178 ---~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~----~~~~~~~~~~~~~~~~--~~~p~ivv~NK 235 (348)
.... ......+...++.+.+=++|+|=-+. .......+++.++.++ .++|+|.|+++
T Consensus 124 ~~~~~~~-~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 124 YRPRDRV-AKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred cCCCCCH-HHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 0011 11223344667778888888885432 2223344445444432 56888888764
No 443
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.29 E-value=0.0027 Score=64.96 Aligned_cols=124 Identities=17% Similarity=0.211 Sum_probs=72.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--------------------------------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL-------------------------------------- 155 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~-------------------------------------- 155 (348)
..+.|+++|..++||||.++++.|..+.+.... ..|+-+..
T Consensus 28 ~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~g-ivTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e 106 (657)
T KOG0446|consen 28 PLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVG-IVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE 106 (657)
T ss_pred cCCceEEecCCCCcchhHHHHhhcccccccccc-ceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence 455899999999999999999999665431111 11111000
Q ss_pred ------------------EEEeCCCeeEEEEeCCCCchh----hhhhhHHHHHHHHHhhccCccEEEEEecCCCCC--ch
Q 018949 156 ------------------GICSGPEYQMILYDTPGIIEK----KIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ER 211 (348)
Q Consensus 156 ------------------~~~~~~~~~~~l~DtpG~~~~----~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~--~~ 211 (348)
.+....-..++++|.||+... ...............++.....+++.+...+.. +.
T Consensus 107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~ats 186 (657)
T KOG0446|consen 107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDIATS 186 (657)
T ss_pred HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhhhcC
Confidence 001111135889999998542 234455666677788889999988888775432 11
Q ss_pred HHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 212 IDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 212 ~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
....+...... .+...+-|++|.|+++
T Consensus 187 ~alkiarevDp--~g~RTigvitK~Dlmd 213 (657)
T KOG0446|consen 187 PALVVAREVDP--GGSRTLEVITKFDFMD 213 (657)
T ss_pred HHHHHHHhhCC--CccchhHHhhhHHhhh
Confidence 11112222222 3445566667766653
No 444
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.28 E-value=0.02 Score=50.74 Aligned_cols=101 Identities=7% Similarity=0.073 Sum_probs=57.9
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC----chHHHHHHHhcccccCCCCEEEEEeccC
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~----~~~~~~~~~~~~~~~~~~p~ivv~NK~D 237 (348)
++.+.|+||+|..... ....+..+|.||.=+-.+... .....++.+..+..+..+|.-|+.|++.
T Consensus 83 ~~d~VlvDleG~as~~-----------~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~ 151 (231)
T PF07015_consen 83 GFDFVLVDLEGGASEL-----------NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVP 151 (231)
T ss_pred CCCEEEEeCCCCCchh-----------HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCC
Confidence 4679999999953211 112256789887755444322 1222344444444457899999999997
Q ss_pred CCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHH
Q 018949 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
-............+.. ..|++.+.-.......+++.
T Consensus 152 ~~~~~~~~~~~~e~~~---~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 152 AARLTRAQRIISEQLE---SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred cchhhHHHHHHHHHHh---cCCccccccccHHHHHHHHH
Confidence 4422222222222222 24778887777766666655
No 445
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.27 E-value=0.0036 Score=49.62 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.|+|.|.+|+||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 446
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.21 E-value=0.0041 Score=50.42 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCce
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKL 140 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~ 140 (348)
.++|+|++|+|||||++.+.|...
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EEEEEccCCCccccceeeeccccc
Confidence 799999999999999999999653
No 447
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.19 E-value=0.038 Score=46.69 Aligned_cols=104 Identities=18% Similarity=0.160 Sum_probs=58.4
Q ss_pred cCCCCChHHHHHHHh------CCceeeecCCCCc-eEEe-EE---------EE---EeCCCeeEEEEeCCCCchhhhhhh
Q 018949 122 GKPNVGKSTLANQMI------GQKLSIVTNKPQT-TRHR-IL---------GI---CSGPEYQMILYDTPGIIEKKIHML 181 (348)
Q Consensus 122 G~~~~GKSsLin~l~------~~~~~~~~~~~~~-t~~~-~~---------~~---~~~~~~~~~l~DtpG~~~~~~~~l 181 (348)
+.+|+||||+.-.|. |.+...+...+.. +... .. .. ...+.+.+.++|||+.....
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~---- 82 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDE---- 82 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHhCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCcHH----
Confidence 578999999876653 4444433222211 1100 00 00 11246789999999843211
Q ss_pred HHHHHHHHHhh--ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCE-EEEEeccCC
Q 018949 182 DSMMMKNVRSA--GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDL 238 (348)
Q Consensus 182 ~~~~~~~~~~~--~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~NK~Dl 238 (348)
.... +..+|.+++|+............+...++. .+.++ -+|+|+.+.
T Consensus 83 -------~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~--~~~~~~gvv~N~~~~ 133 (169)
T cd02037 83 -------HLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKK--VNIPILGVVENMSYF 133 (169)
T ss_pred -------HHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHh--cCCCeEEEEEcCCcc
Confidence 1111 257899999998865444444445555555 34554 478999885
No 448
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.18 E-value=0.0026 Score=54.26 Aligned_cols=41 Identities=27% Similarity=0.369 Sum_probs=28.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC 158 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~ 158 (348)
-+++.|++||||||++++|+... ...-....||+..-.+.+
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv 46 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEV 46 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCc
Confidence 58999999999999999999776 322334445555444433
No 449
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.15 E-value=0.005 Score=42.93 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
..+|.|+.|+||||++.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999865
No 450
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.09 E-value=0.0043 Score=54.92 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.|+|+|++|+|||||+|.+.+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 79999999999999999998744
No 451
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.09 E-value=0.028 Score=53.57 Aligned_cols=24 Identities=42% Similarity=0.549 Sum_probs=20.1
Q ss_pred CCccEEEEEcCCCCChHHHHHHHh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~ 136 (348)
.+.++|+++|+.++|||||..-|.
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~La 94 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLA 94 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHH
Confidence 356699999999999999986654
No 452
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.09 E-value=0.046 Score=52.61 Aligned_cols=92 Identities=22% Similarity=0.388 Sum_probs=52.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCC----------------c-------eEEeEEE------EE
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQ----------------T-------TRHRILG------IC 158 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~----------------~-------t~~~~~~------~~ 158 (348)
.+..|.++|--|+||||.+-.|. +.++..++.... . ...+... ..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 34479999999999999988764 333332221110 0 0000000 01
Q ss_pred eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH--hhccCccEEEEEecCCCCCc
Q 018949 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR--SAGINADCIVVLVDACKAPE 210 (348)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~--~~~~~ad~iv~VvD~~~~~~ 210 (348)
...++.+.++||+|-.+ ++..++.+.. ...-..|=+++|+|+..+..
T Consensus 179 k~~~~DvvIvDTAGRl~-----ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd 227 (451)
T COG0541 179 KEEGYDVVIVDTAGRLH-----IDEELMDELKEIKEVINPDETLLVVDAMIGQD 227 (451)
T ss_pred HHcCCCEEEEeCCCccc-----ccHHHHHHHHHHHhhcCCCeEEEEEecccchH
Confidence 12345799999999433 2233333322 23457899999999987653
No 453
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.06 E-value=0.13 Score=47.12 Aligned_cols=150 Identities=14% Similarity=0.101 Sum_probs=70.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCch-hhhhhhHHHHHHHHHhhccC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIE-KKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~-~~~~~l~~~~~~~~~~~~~~ 195 (348)
-|++.|.|++||||+.+.|...-.. .+.. ..+++.+... ++.-.+.+ ......+..+...+.+.+..
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~-----~~~~----v~~i~~~~~~---~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~ 70 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEE-----KGKE----VVIISDDSLG---IDRNDYADSKKEKEARGSLKSAVERALSK 70 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHH-----TT------EEEE-THHHH----TTSSS--GGGHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh-----cCCE----EEEEcccccc---cchhhhhchhhhHHHHHHHHHHHHHhhcc
Confidence 4899999999999999998753111 0000 0011111000 11111111 11123444455556666655
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC---------------hhhHHHHHHHHHhcCCC---
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK---------------PGEIAKKLEWYEKFTDV--- 257 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~---------------~~~~~~~~~~~~~~~~~--- 257 (348)
-+ |+++|...-.......+..+.+. .+.+..+|..++++.. .+-+..+...++.-...
T Consensus 71 ~~--iVI~Dd~nYiKg~RYelyclAr~--~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P~~~nrW 146 (270)
T PF08433_consen 71 DT--IVILDDNNYIKGMRYELYCLARA--YGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEEPDPKNRW 146 (270)
T ss_dssp -S--EEEE-S---SHHHHHHHHHHHHH--TT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---TTSS-GG
T ss_pred Ce--EEEEeCCchHHHHHHHHHHHHHH--cCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcCCCCCCCc
Confidence 44 45689988887877788888777 7788888887777521 11223333333332221
Q ss_pred -CeEEEec-CCCCCCHHHHHHHHHHhC
Q 018949 258 -DEVIPVS-AKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 258 -~~i~~vS-A~~g~gi~eL~~~i~~~l 282 (348)
.|.|.+. .-....++++++.|...-
T Consensus 147 D~plf~i~~~~~~~~~~~I~~~l~~~~ 173 (270)
T PF08433_consen 147 DSPLFTIDSSDEELPLEEIWNALFENK 173 (270)
T ss_dssp GS-SEEEE-TTS---HHHHHHHHHHHH
T ss_pred cCCeEEEecCCCCCCHHHHHHHHHhcC
Confidence 1445554 566667889998886543
No 454
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.04 E-value=0.0061 Score=51.99 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.|+|+|++|+|||||++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 58999999999999999998854
No 455
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=96.01 E-value=0.038 Score=49.43 Aligned_cols=67 Identities=9% Similarity=0.031 Sum_probs=40.4
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCc-h---HHHHHHHhcccccCCCCEEEEEecc
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-R---IDEILEEGVGDHKDKLPILLVLNKK 236 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~-~---~~~~~~~~~~~~~~~~p~ivv~NK~ 236 (348)
+++.+.++||||... ......+..+|.+|..+..+...- . ....+....+....+.|..+++|.+
T Consensus 82 ~~yD~iiID~pp~~~-----------~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~ 150 (231)
T PRK13849 82 QGFDYALADTHGGSS-----------ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRV 150 (231)
T ss_pred CCCCEEEEeCCCCcc-----------HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEec
Confidence 457899999999532 112334678899988887754321 1 1112222222223577888999998
Q ss_pred CC
Q 018949 237 DL 238 (348)
Q Consensus 237 Dl 238 (348)
+-
T Consensus 151 ~~ 152 (231)
T PRK13849 151 PV 152 (231)
T ss_pred cc
Confidence 73
No 456
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.99 E-value=0.0061 Score=49.90 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=19.5
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 018949 118 VAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~ 138 (348)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999875
No 457
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=95.91 E-value=0.028 Score=47.93 Aligned_cols=67 Identities=24% Similarity=0.185 Sum_probs=45.8
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
+.+.+.++|||+.... .....+..+|.+++++..+.........+.+.++. .+.|+.+|+||+|...
T Consensus 91 ~~~d~viiDtpp~~~~-----------~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~--~~~~~~vV~N~~~~~~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIGC-----------PVIASLTGADAALLVTEPTPSGLHDLERAVELVRH--FGIPVGVVINKYDLND 157 (179)
T ss_pred cCCCEEEEECcCCCcH-----------HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHH--cCCCEEEEEeCCCCCc
Confidence 4678999999964221 12233578999999999875543333444455555 4678899999999754
No 458
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.91 E-value=0.0061 Score=51.91 Aligned_cols=22 Identities=50% Similarity=0.671 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+|+|+|++|+|||||+|-+.|-
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhc
Confidence 7999999999999999998874
No 459
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.90 E-value=0.22 Score=44.92 Aligned_cols=20 Identities=35% Similarity=0.662 Sum_probs=18.1
Q ss_pred EEEEcCCCCChHHHHHHHhC
Q 018949 118 VAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~ 137 (348)
|+++|.||+||||+...|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999998863
No 460
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=95.88 E-value=0.18 Score=45.24 Aligned_cols=65 Identities=17% Similarity=0.119 Sum_probs=38.2
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCC
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLI 239 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~ 239 (348)
.+.++++|||+-... .....+..+|.+++|++.+..............+. .+.+ +.+|+|+.+..
T Consensus 108 ~yD~VIiD~p~~~~~-----------~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~--~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 108 DTDFLLIDAPAGLER-----------DAVTALAAADELLLVVNPEISSITDALKTKIVAEK--LGTAILGVVLNRVTRD 173 (251)
T ss_pred hCCEEEEeCCCccCH-----------HHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHh--cCCceEEEEEECCCch
Confidence 357999999974321 12223567899999998864332211122233333 3445 46899999864
No 461
>PHA02518 ParA-like protein; Provisional
Probab=95.87 E-value=0.11 Score=45.33 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=37.3
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-c---hHHHHHHHhcccccCCCCE-EEEEecc
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-E---RIDEILEEGVGDHKDKLPI-LLVLNKK 236 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-~---~~~~~~~~~~~~~~~~~p~-ivv~NK~ 236 (348)
.+.++++||||... ......+..+|.+|+++..+... . .....+.. ......+.|. .++.|+.
T Consensus 76 ~~d~viiD~p~~~~-----------~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~-~~~~~~~~~~~~iv~n~~ 143 (211)
T PHA02518 76 GYDYVVVDGAPQDS-----------ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKA-RQEVTDGLPKFAFIISRA 143 (211)
T ss_pred cCCEEEEeCCCCcc-----------HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHH-HHhhCCCCceEEEEEecc
Confidence 46799999998422 11234467999999999886533 1 12122221 1111134444 5677876
Q ss_pred CCC
Q 018949 237 DLI 239 (348)
Q Consensus 237 Dl~ 239 (348)
+..
T Consensus 144 ~~~ 146 (211)
T PHA02518 144 IKN 146 (211)
T ss_pred CCc
Confidence 644
No 462
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.86 E-value=0.062 Score=43.02 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
..+.+.|++|+|||++++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999988743
No 463
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.82 E-value=0.084 Score=48.13 Aligned_cols=19 Identities=42% Similarity=0.648 Sum_probs=16.0
Q ss_pred EEEEEcCCCCChHHHHHHH
Q 018949 117 YVAVLGKPNVGKSTLANQM 135 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l 135 (348)
+|++.|..||||||+.-.|
T Consensus 2 ~i~v~gKGGvGKTT~a~nL 20 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNL 20 (267)
T ss_pred EEEEecCCCCCHHHHHHHH
Confidence 5888899999999976654
No 464
>PRK07261 topology modulation protein; Provisional
Probab=95.81 E-value=0.0073 Score=51.41 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
+|+|+|.+|+|||||...|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 465
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.77 E-value=0.0053 Score=51.60 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=17.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999854
No 466
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.76 E-value=0.0088 Score=42.69 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 018949 118 VAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~ 138 (348)
|++.|.+|+||||+.+++...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998764
No 467
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.05 Score=51.08 Aligned_cols=101 Identities=19% Similarity=0.344 Sum_probs=57.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCC--CchhhhhhhHHHHHH-HHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPG--IIEKKIHMLDSMMMK-NVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG--~~~~~~~~l~~~~~~-~~~~~~ 193 (348)
=|.+.|+||+|||-|..+..+..-+ +++-..| +++. +-.-...+.+ .+.-+-
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~~T~A------------------------tFIrvvgSElVqK-YiGEGaRlVRelF~lAr 241 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVANQTDA------------------------TFIRVVGSELVQK-YIGEGARLVRELFELAR 241 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCc------------------------eEEEeccHHHHHH-HhccchHHHHHHHHHHh
Confidence 4999999999999999987664321 1111223 2221 1111111222 222233
Q ss_pred cCccEEEEE--ecC---------CCCCchHHHHHHHhcccc-----cCCCCEEEEEeccCCCChh
Q 018949 194 INADCIVVL--VDA---------CKAPERIDEILEEGVGDH-----KDKLPILLVLNKKDLIKPG 242 (348)
Q Consensus 194 ~~ad~iv~V--vD~---------~~~~~~~~~~~~~~~~~~-----~~~~p~ivv~NK~Dl~~~~ 242 (348)
..+-.|||+ +|+ +.+..+....+++++..+ ..++.+|.+-|+.|..++.
T Consensus 242 ekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPA 306 (406)
T COG1222 242 EKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPA 306 (406)
T ss_pred hcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChh
Confidence 456666665 333 123355566666666553 2578899999999988764
No 468
>PRK08118 topology modulation protein; Reviewed
Probab=95.65 E-value=0.0091 Score=50.61 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+|.|+|++|+|||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988753
No 469
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=0.017 Score=55.91 Aligned_cols=124 Identities=18% Similarity=0.271 Sum_probs=67.4
Q ss_pred CCccEEEEEcCCCCChHHHHHHHh----CCceee--ecCCCCc--------------------eEEeEE-EE--------
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMI----GQKLSI--VTNKPQT--------------------TRHRIL-GI-------- 157 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~----~~~~~~--~~~~~~~--------------------t~~~~~-~~-------- 157 (348)
.++-.|+|+|-.||||||-+-.+. ..++.. ..-.+.. -..... +.
T Consensus 376 krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~va 455 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVA 455 (587)
T ss_pred CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHH
Confidence 356689999999999999998853 344321 1111100 000000 00
Q ss_pred ------EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHH--HHHHHhcccccCCCC-
Q 018949 158 ------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERID--EILEEGVGDHKDKLP- 228 (348)
Q Consensus 158 ------~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~--~~~~~~~~~~~~~~p- 228 (348)
-...+..++|+||+|-.+....-+.. + . -.......|.|+||-.+--+....+ ..+...+.. ...|
T Consensus 456 k~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~-l-~-k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~~--~~~~r 530 (587)
T KOG0781|consen 456 KEAIQEARNQGFDVVLIDTAGRMHNNAPLMTS-L-A-KLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALAD--HSTPR 530 (587)
T ss_pred HHHHHHHHhcCCCEEEEeccccccCChhHHHH-H-H-HHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHhc--CCCcc
Confidence 12345679999999965533222211 1 1 1122468899999977644433322 233334433 2223
Q ss_pred --EEEEEeccCCCCh
Q 018949 229 --ILLVLNKKDLIKP 241 (348)
Q Consensus 229 --~ivv~NK~Dl~~~ 241 (348)
--++++|+|-++.
T Consensus 531 ~id~~~ltk~dtv~d 545 (587)
T KOG0781|consen 531 LIDGILLTKFDTVDD 545 (587)
T ss_pred ccceEEEEeccchhh
Confidence 2478999998764
No 470
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.64 E-value=0.012 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.|+|+|++|+|||||++.+.+..
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 79999999999999999998753
No 471
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.63 E-value=0.0093 Score=51.13 Aligned_cols=22 Identities=41% Similarity=0.711 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+|+|+|+||+||||+...|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999875
No 472
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.63 E-value=0.0089 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|+.|+|||||++.+.|..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 79999999999999999999853
No 473
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.63 E-value=0.01 Score=51.94 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
+.-.|+|+|++|+|||||+.++-+-.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 33479999999999999999998754
No 474
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.61 E-value=0.0094 Score=52.31 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+...|+|+|++|+|||||++++.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3347999999999999999999763
No 475
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.60 E-value=0.0099 Score=52.15 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
No 476
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.59 E-value=0.0096 Score=48.53 Aligned_cols=20 Identities=40% Similarity=0.662 Sum_probs=18.4
Q ss_pred EEEEcCCCCChHHHHHHHhC
Q 018949 118 VAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~ 137 (348)
|.++|+||+|||||+..+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999874
No 477
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.58 E-value=0.012 Score=46.83 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
..++++|++|+||||++..+...-
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc
Confidence 379999999999999999988754
No 478
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.56 E-value=0.01 Score=53.03 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 479
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.56 E-value=0.01 Score=52.28 Aligned_cols=24 Identities=42% Similarity=0.609 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
-.++|+|++|+|||||++.+.|..
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999853
No 480
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.56 E-value=0.11 Score=50.17 Aligned_cols=24 Identities=42% Similarity=0.692 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..+|+|||+.|||||||+.-|+|.
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcC
Confidence 348999999999999999999985
No 481
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.55 E-value=0.011 Score=51.05 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 482
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.54 E-value=0.011 Score=48.52 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+.|+|+|+.|+|||||+..|+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999875
No 483
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.53 E-value=0.011 Score=52.11 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
-.++|+|++|+|||||++.+.|..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999853
No 484
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.51 E-value=0.013 Score=49.89 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+.+.++|+|++|+|||||++++...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4457999999999999999998854
No 485
>PRK08233 hypothetical protein; Provisional
Probab=95.50 E-value=0.012 Score=50.01 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
...|+|.|.+|+|||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999763
No 486
>PRK08181 transposase; Validated
Probab=95.49 E-value=0.022 Score=52.13 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.+.++|++|+|||.|..++..
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~ 128 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGL 128 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHH
Confidence 699999999999999999865
No 487
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.48 E-value=0.011 Score=50.48 Aligned_cols=22 Identities=41% Similarity=0.401 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
-.++++|+.|+|||||++.+++
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 3799999999999999999874
No 488
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.47 E-value=0.012 Score=51.49 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
No 489
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.47 E-value=0.013 Score=53.01 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
.-.++|+|+.|+|||||++++.|
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999987
No 490
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.46 E-value=0.012 Score=51.39 Aligned_cols=23 Identities=35% Similarity=0.393 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|.-
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
No 491
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.46 E-value=0.012 Score=51.75 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
-.++|+|+.|+|||||++.+.|..
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999853
No 492
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.45 E-value=0.013 Score=50.60 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
...++|+|++|+|||||++++++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999874
No 493
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.45 E-value=0.012 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+...|+|.|.+|+|||||.+.|.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4558999999999999999998763
No 494
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.44 E-value=0.012 Score=51.99 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|+.|+|||||++.+.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
No 495
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41 E-value=0.012 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 496
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.41 E-value=0.014 Score=48.21 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 78999999999999999999864
No 497
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.41 E-value=0.012 Score=46.70 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 018949 118 VAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~ 138 (348)
|+|.|.+|+||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998754
No 498
>PRK04195 replication factor C large subunit; Provisional
Probab=95.38 E-value=0.23 Score=49.49 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..+.|.|++|+||||+++++...
T Consensus 40 ~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999764
No 499
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.38 E-value=0.013 Score=51.45 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 500
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.37 E-value=0.014 Score=49.90 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
Done!