Query 018949
Match_columns 348
No_of_seqs 387 out of 3455
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 08:33:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018949.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018949hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iev_A GTP-binding protein ERA 100.0 6.3E-35 2.1E-39 271.4 24.2 231 110-342 5-243 (308)
2 1wf3_A GTP-binding protein; GT 100.0 7E-34 2.4E-38 263.3 24.1 225 113-341 5-232 (301)
3 1ega_A Protein (GTP-binding pr 100.0 5.1E-32 1.8E-36 250.9 24.7 226 113-341 6-233 (301)
4 4dhe_A Probable GTP-binding pr 99.9 6.1E-24 2.1E-28 187.2 17.2 170 113-284 27-211 (223)
5 3gee_A MNME, tRNA modification 99.9 7.8E-25 2.7E-29 214.0 11.5 209 61-283 183-397 (476)
6 2dyk_A GTP-binding protein; GT 99.9 1.9E-24 6.6E-29 180.0 11.9 160 116-283 2-161 (161)
7 3pqc_A Probable GTP-binding pr 99.9 8.6E-23 3E-27 175.3 18.2 166 113-283 21-193 (195)
8 3geh_A MNME, tRNA modification 99.9 2.7E-24 9.4E-29 209.4 9.6 211 61-286 175-386 (462)
9 1mky_A Probable GTP-binding pr 99.9 1.2E-23 4E-28 204.7 13.6 165 116-284 2-166 (439)
10 1svi_A GTP-binding protein YSX 99.9 8.2E-23 2.8E-27 175.9 17.0 166 113-283 21-194 (195)
11 2aka_B Dynamin-1; fusion prote 99.9 1.9E-24 6.5E-29 199.2 7.0 203 113-323 24-292 (299)
12 2qu8_A Putative nucleolar GTP- 99.9 1.7E-22 5.9E-27 179.1 17.9 170 113-283 27-204 (228)
13 2gj8_A MNME, tRNA modification 99.9 3E-23 1E-27 176.1 12.0 162 115-284 4-166 (172)
14 3iby_A Ferrous iron transport 99.9 4.6E-23 1.6E-27 186.4 13.0 158 117-281 3-164 (256)
15 4dkx_A RAS-related protein RAB 99.9 5.1E-23 1.7E-27 181.4 12.2 163 112-284 10-176 (216)
16 2nzj_A GTP-binding protein REM 99.9 9.2E-23 3.1E-27 172.1 13.0 161 114-282 3-167 (175)
17 1zj6_A ADP-ribosylation factor 99.9 5.4E-22 1.9E-26 170.0 18.0 163 114-289 15-183 (187)
18 1f6b_A SAR1; gtpases, N-termin 99.9 2.6E-22 8.9E-27 174.1 15.7 156 114-282 24-197 (198)
19 3a1s_A Iron(II) transport prot 99.9 1.4E-22 4.6E-27 183.5 14.1 163 114-283 4-166 (258)
20 2wji_A Ferrous iron transport 99.9 6.6E-23 2.3E-27 172.5 11.1 162 115-283 3-164 (165)
21 2fg5_A RAB-22B, RAS-related pr 99.9 2.4E-22 8.3E-27 173.2 14.7 163 114-286 22-188 (192)
22 3q72_A GTP-binding protein RAD 99.9 1.3E-22 4.4E-27 169.9 12.5 156 116-282 3-162 (166)
23 1c1y_A RAS-related protein RAP 99.9 2.8E-22 9.7E-27 167.6 14.2 158 114-282 2-165 (167)
24 1fzq_A ADP-ribosylation factor 99.9 1.3E-21 4.6E-26 167.1 18.3 158 114-284 15-178 (181)
25 2xtp_A GTPase IMAP family memb 99.9 1.2E-23 4.2E-28 190.3 5.7 184 113-299 20-224 (260)
26 1r2q_A RAS-related protein RAB 99.9 2.5E-22 8.6E-27 168.3 13.4 161 114-284 5-169 (170)
27 4bas_A ADP-ribosylation factor 99.9 5.1E-22 1.8E-26 171.3 15.6 160 111-283 13-188 (199)
28 1z0j_A RAB-22, RAS-related pro 99.9 4.4E-22 1.5E-26 167.0 14.7 161 114-284 5-169 (170)
29 2efe_B Small GTP-binding prote 99.9 6.1E-22 2.1E-26 168.1 15.6 161 114-284 11-175 (181)
30 2hjg_A GTP-binding protein ENG 99.9 5.6E-23 1.9E-27 199.7 10.1 162 116-284 4-165 (436)
31 1m2o_B GTP-binding protein SAR 99.9 8.2E-22 2.8E-26 169.8 15.7 156 114-282 22-190 (190)
32 2h17_A ADP-ribosylation factor 99.9 8.9E-22 3E-26 167.9 15.8 156 113-281 19-180 (181)
33 3i8s_A Ferrous iron transport 99.9 9E-23 3.1E-27 186.3 10.0 165 114-285 2-170 (274)
34 1r8s_A ADP-ribosylation factor 99.9 7.5E-22 2.6E-26 164.9 14.7 155 117-284 2-162 (164)
35 2hjg_A GTP-binding protein ENG 99.9 1.1E-22 3.9E-27 197.5 10.9 169 114-284 174-349 (436)
36 1jwy_B Dynamin A GTPase domain 99.9 1E-22 3.6E-27 189.1 9.9 204 114-324 23-299 (315)
37 1ek0_A Protein (GTP-binding pr 99.9 3.5E-22 1.2E-26 167.4 12.3 159 115-283 3-168 (170)
38 1upt_A ARL1, ADP-ribosylation 99.9 1.1E-21 3.6E-26 164.9 15.1 157 114-283 6-168 (171)
39 1mh1_A RAC1; GTP-binding, GTPa 99.9 5.1E-22 1.7E-26 169.2 13.3 162 114-286 4-182 (186)
40 1wms_A RAB-9, RAB9, RAS-relate 99.9 1E-21 3.5E-26 166.1 14.9 160 114-283 6-173 (177)
41 1xzp_A Probable tRNA modificat 99.9 8.8E-23 3E-27 199.7 9.3 161 116-283 244-404 (482)
42 3tw8_B RAS-related protein RAB 99.9 2.8E-22 9.7E-27 169.9 11.2 157 114-282 8-169 (181)
43 1zd9_A ADP-ribosylation factor 99.9 2.2E-21 7.4E-26 166.6 16.8 159 114-284 21-185 (188)
44 4dsu_A GTPase KRAS, isoform 2B 99.9 6.4E-22 2.2E-26 169.0 13.4 158 114-283 3-165 (189)
45 2h57_A ADP-ribosylation factor 99.9 1.3E-21 4.3E-26 168.1 15.3 160 114-284 20-187 (190)
46 3tkl_A RAS-related protein RAB 99.9 9.4E-22 3.2E-26 169.3 14.5 159 114-283 15-178 (196)
47 3gj0_A GTP-binding nuclear pro 99.9 6.8E-23 2.3E-27 180.6 7.4 164 113-288 13-179 (221)
48 2g6b_A RAS-related protein RAB 99.9 4E-22 1.4E-26 169.1 11.9 161 114-284 9-174 (180)
49 4dcu_A GTP-binding protein ENG 99.9 2.9E-22 1E-26 195.7 12.5 170 113-284 193-369 (456)
50 2lkc_A Translation initiation 99.9 3.8E-22 1.3E-26 169.0 11.5 157 114-283 7-170 (178)
51 2y8e_A RAB-protein 6, GH09086P 99.9 6E-22 2.1E-26 167.6 12.7 159 114-284 13-177 (179)
52 1x3s_A RAS-related protein RAB 99.9 7.4E-22 2.5E-26 169.6 13.4 169 114-292 14-186 (195)
53 2j1l_A RHO-related GTP-binding 99.9 9.4E-22 3.2E-26 172.6 14.1 159 114-283 33-208 (214)
54 1g16_A RAS-related protein SEC 99.9 7.1E-22 2.4E-26 165.7 12.7 158 115-283 3-164 (170)
55 3reg_A RHO-like small GTPase; 99.9 3.7E-22 1.3E-26 172.0 11.3 160 114-284 22-188 (194)
56 2wjg_A FEOB, ferrous iron tran 99.9 5.2E-22 1.8E-26 169.9 12.1 166 113-285 5-170 (188)
57 2il1_A RAB12; G-protein, GDP, 99.9 1.1E-21 3.9E-26 169.0 14.3 159 114-282 25-188 (192)
58 2b6h_A ADP-ribosylation factor 99.9 1.8E-21 6.1E-26 168.0 15.5 157 114-283 28-190 (192)
59 4djt_A GTP-binding nuclear pro 99.9 7.8E-22 2.7E-26 173.2 13.1 164 114-287 10-178 (218)
60 2bme_A RAB4A, RAS-related prot 99.9 1.4E-21 4.8E-26 166.8 13.9 159 114-283 9-172 (186)
61 1ksh_A ARF-like protein 2; sma 99.9 2.1E-21 7.2E-26 165.9 14.9 158 114-284 17-180 (186)
62 1z0f_A RAB14, member RAS oncog 99.9 2E-21 6.7E-26 164.4 14.5 160 114-283 14-177 (179)
63 3k53_A Ferrous iron transport 99.9 1E-21 3.5E-26 178.9 13.4 164 114-284 2-166 (271)
64 1kao_A RAP2A; GTP-binding prot 99.9 4.7E-22 1.6E-26 165.9 10.3 157 114-282 2-164 (167)
65 2fn4_A P23, RAS-related protei 99.9 1.3E-21 4.4E-26 165.8 13.1 161 111-283 5-171 (181)
66 3b1v_A Ferrous iron uptake tra 99.9 3.6E-22 1.2E-26 182.0 10.2 161 116-284 4-164 (272)
67 2atx_A Small GTP binding prote 99.9 1.3E-21 4.6E-26 168.4 13.2 158 114-282 17-191 (194)
68 3clv_A RAB5 protein, putative; 99.9 4.2E-21 1.4E-25 165.6 16.3 155 114-282 6-202 (208)
69 3kkq_A RAS-related protein M-R 99.9 1.5E-21 5.1E-26 166.3 13.1 159 112-282 15-180 (183)
70 2oil_A CATX-8, RAS-related pro 99.9 1.2E-21 4.1E-26 168.6 12.6 159 114-282 24-186 (193)
71 1u8z_A RAS-related protein RAL 99.9 1.1E-21 3.8E-26 163.8 12.0 156 114-282 3-165 (168)
72 3q3j_B RHO-related GTP-binding 99.9 5.1E-22 1.7E-26 174.5 10.2 161 113-284 25-203 (214)
73 4gzl_A RAS-related C3 botulinu 99.9 1.4E-21 4.7E-26 170.3 12.8 158 114-282 29-203 (204)
74 4dcu_A GTP-binding protein ENG 99.9 4.5E-22 1.5E-26 194.4 10.7 165 113-284 21-185 (456)
75 1moz_A ARL1, ADP-ribosylation 99.9 2.1E-21 7.1E-26 165.2 13.5 157 113-282 16-178 (183)
76 3cph_A RAS-related protein SEC 99.9 1.7E-21 5.9E-26 170.0 13.1 159 114-283 19-181 (213)
77 2hup_A RAS-related protein RAB 99.9 2.7E-21 9.3E-26 168.0 14.2 160 114-283 28-192 (201)
78 1vg8_A RAS-related protein RAB 99.9 1.8E-21 6.1E-26 169.1 12.8 160 114-283 7-174 (207)
79 2fh5_B SR-beta, signal recogni 99.9 2.4E-21 8.3E-26 169.5 13.7 159 114-282 6-214 (214)
80 2ce2_X GTPase HRAS; signaling 99.9 3.4E-21 1.2E-25 160.4 13.9 156 115-282 3-163 (166)
81 3t5g_A GTP-binding protein RHE 99.9 8.2E-22 2.8E-26 167.6 10.0 160 114-285 5-170 (181)
82 2iwr_A Centaurin gamma 1; ANK 99.9 2.3E-21 8E-26 164.3 12.8 154 114-282 6-167 (178)
83 1ky3_A GTP-binding protein YPT 99.9 2.8E-21 9.6E-26 163.9 13.1 159 114-282 7-176 (182)
84 2q3h_A RAS homolog gene family 99.9 1.4E-21 4.7E-26 169.3 11.3 159 114-283 19-194 (201)
85 2gf9_A RAS-related protein RAB 99.9 1.9E-21 6.4E-26 166.9 12.0 158 115-282 22-183 (189)
86 3bwd_D RAC-like GTP-binding pr 99.9 4.6E-22 1.6E-26 169.0 8.2 159 114-283 7-180 (182)
87 2ew1_A RAS-related protein RAB 99.9 3.4E-21 1.1E-25 167.8 13.8 159 114-283 25-188 (201)
88 2erx_A GTP-binding protein DI- 99.9 2.2E-21 7.7E-26 162.8 12.2 158 115-284 3-167 (172)
89 2a5j_A RAS-related protein RAB 99.9 1.7E-21 5.9E-26 167.5 11.6 159 114-282 20-182 (191)
90 2x77_A ADP-ribosylation factor 99.9 2.2E-21 7.6E-26 166.3 12.3 157 114-283 21-183 (189)
91 2a9k_A RAS-related protein RAL 99.9 2.4E-21 8.3E-26 165.0 12.5 157 113-282 16-179 (187)
92 3qq5_A Small GTP-binding prote 99.9 3.9E-22 1.3E-26 191.9 8.3 165 113-285 32-197 (423)
93 1zbd_A Rabphilin-3A; G protein 99.9 5.4E-21 1.8E-25 165.8 14.4 159 115-283 8-170 (203)
94 2o52_A RAS-related protein RAB 99.9 2E-21 6.9E-26 168.6 11.6 159 114-283 24-187 (200)
95 2gco_A H9, RHO-related GTP-bin 99.9 4E-21 1.4E-25 166.8 13.4 159 114-282 24-198 (201)
96 3bc1_A RAS-related protein RAB 99.9 8.7E-21 3E-25 162.5 15.2 158 114-282 10-183 (195)
97 1lnz_A SPO0B-associated GTP-bi 99.9 1.1E-21 3.6E-26 184.2 10.2 167 117-292 160-340 (342)
98 2fu5_C RAS-related protein RAB 99.9 8.5E-22 2.9E-26 167.8 8.6 158 114-282 7-169 (183)
99 3con_A GTPase NRAS; structural 99.9 6E-21 2.1E-25 163.6 13.9 159 113-283 19-182 (190)
100 2p5s_A RAS and EF-hand domain 99.9 2.9E-21 9.9E-26 167.3 12.1 160 114-283 27-196 (199)
101 2fv8_A H6, RHO-related GTP-bin 99.9 3.3E-21 1.1E-25 168.1 12.5 160 114-284 24-200 (207)
102 3dz8_A RAS-related protein RAB 99.9 9.2E-22 3.2E-26 169.2 8.8 159 114-282 22-184 (191)
103 3ihw_A Centg3; RAS, centaurin, 99.9 6.1E-21 2.1E-25 163.5 13.9 153 113-282 18-178 (184)
104 1z2a_A RAS-related protein RAB 99.9 3.4E-21 1.2E-25 161.2 12.0 157 114-282 4-165 (168)
105 2j0v_A RAC-like GTP-binding pr 99.9 2E-21 6.9E-26 169.8 11.0 160 114-284 8-180 (212)
106 1z06_A RAS-related protein RAB 99.9 4.5E-21 1.5E-25 164.5 13.0 161 114-283 19-187 (189)
107 1z08_A RAS-related protein RAB 99.9 1.2E-21 4E-26 164.5 9.1 159 114-283 5-168 (170)
108 2hxs_A RAB-26, RAS-related pro 99.9 2.3E-21 7.8E-26 164.1 10.8 161 114-285 5-174 (178)
109 2gf0_A GTP-binding protein DI- 99.9 6.4E-21 2.2E-25 164.4 13.7 160 114-285 7-172 (199)
110 3oes_A GTPase rhebl1; small GT 99.8 1E-21 3.4E-26 170.5 8.5 160 113-284 22-187 (201)
111 1mky_A Probable GTP-binding pr 99.8 3.3E-21 1.1E-25 187.3 12.9 169 114-284 179-355 (439)
112 2bov_A RAla, RAS-related prote 99.8 4.8E-21 1.7E-25 166.1 12.6 158 113-283 12-176 (206)
113 3q85_A GTP-binding protein REM 99.8 5.2E-21 1.8E-25 160.5 11.5 156 116-282 3-165 (169)
114 3llu_A RAS-related GTP-binding 99.8 1.6E-20 5.6E-25 162.2 15.0 164 112-282 17-195 (196)
115 3cbq_A GTP-binding protein REM 99.8 7.7E-21 2.6E-25 164.5 12.5 161 114-284 22-188 (195)
116 3o47_A ADP-ribosylation factor 99.8 1.5E-20 5.1E-25 176.0 15.4 158 114-284 164-327 (329)
117 2atv_A RERG, RAS-like estrogen 99.8 7.1E-21 2.4E-25 164.3 12.2 158 114-282 27-189 (196)
118 2bcg_Y Protein YP2, GTP-bindin 99.8 5.4E-21 1.8E-25 166.3 11.5 159 114-283 7-170 (206)
119 3t1o_A Gliding protein MGLA; G 99.8 3.8E-21 1.3E-25 165.3 10.4 158 114-282 13-190 (198)
120 1m7b_A RND3/RHOE small GTP-bin 99.8 2.7E-21 9.1E-26 165.4 9.3 158 114-282 6-181 (184)
121 2e87_A Hypothetical protein PH 99.8 3.8E-20 1.3E-24 175.2 18.1 165 114-282 166-334 (357)
122 2f7s_A C25KG, RAS-related prot 99.8 9.8E-21 3.3E-25 166.0 12.9 157 114-282 24-197 (217)
123 2x2e_A Dynamin-1; nitration, h 99.8 3.2E-22 1.1E-26 189.2 3.4 213 114-331 30-315 (353)
124 1wxq_A GTP-binding protein; st 99.8 4.5E-22 1.5E-26 190.5 4.0 191 117-316 2-301 (397)
125 3zvr_A Dynamin-1; hydrolase, D 99.8 3.4E-21 1.2E-25 196.0 9.9 210 115-331 51-335 (772)
126 3cpj_B GTP-binding protein YPT 99.8 7.3E-21 2.5E-25 167.9 9.8 161 114-284 12-176 (223)
127 2g3y_A GTP-binding protein GEM 99.8 1.5E-20 5E-25 165.1 11.6 160 114-282 36-201 (211)
128 3izq_1 HBS1P, elongation facto 99.8 1.4E-20 4.8E-25 189.3 12.9 150 114-274 166-362 (611)
129 2yc2_C IFT27, small RAB-relate 99.8 7.4E-21 2.5E-25 165.0 9.2 159 114-282 19-190 (208)
130 2cxx_A Probable GTP-binding pr 99.8 7.1E-20 2.4E-24 156.5 15.1 158 117-283 3-183 (190)
131 1gwn_A RHO-related GTP-binding 99.8 7.9E-21 2.7E-25 165.9 9.1 158 114-282 27-202 (205)
132 3c5c_A RAS-like protein 12; GD 99.8 1.4E-20 4.6E-25 161.6 10.0 156 114-282 20-184 (187)
133 3lvq_E ARF-GAP with SH3 domain 99.8 6.5E-20 2.2E-24 181.0 15.6 158 114-284 321-484 (497)
134 3lxw_A GTPase IMAP family memb 99.8 3E-20 1E-24 167.0 12.0 177 114-293 20-218 (247)
135 3r7w_A Gtpase1, GTP-binding pr 99.8 1.5E-19 5.2E-24 167.6 16.5 162 116-282 4-179 (307)
136 3l0i_B RAS-related protein RAB 99.8 4.9E-22 1.7E-26 172.2 -1.2 160 114-284 32-196 (199)
137 2qtf_A Protein HFLX, GTP-bindi 99.8 7.8E-20 2.7E-24 173.1 13.9 166 117-284 181-354 (364)
138 1wb1_A Translation elongation 99.8 1.2E-19 4.2E-24 178.0 15.7 159 113-282 17-187 (482)
139 3th5_A RAS-related C3 botulinu 99.7 1.2E-21 4E-26 170.4 0.0 158 114-282 29-203 (204)
140 3t5d_A Septin-7; GTP-binding p 99.8 2.2E-19 7.6E-24 163.7 14.6 165 116-283 9-203 (274)
141 2zej_A Dardarin, leucine-rich 99.8 1.4E-19 4.9E-24 154.7 12.3 159 116-284 3-178 (184)
142 2cjw_A GTP-binding protein GEM 99.8 5.8E-20 2E-24 158.6 9.9 159 115-282 6-170 (192)
143 3sjy_A Translation initiation 99.8 3.2E-19 1.1E-23 171.5 15.9 161 114-284 7-192 (403)
144 3j2k_7 ERF3, eukaryotic polype 99.8 6.3E-19 2.2E-23 171.1 17.8 152 114-276 16-217 (439)
145 3tr5_A RF-3, peptide chain rel 99.8 1.5E-19 5.3E-24 178.7 12.4 117 114-241 12-149 (528)
146 2wkq_A NPH1-1, RAS-related C3 99.8 2.1E-19 7.1E-24 167.5 11.7 159 114-283 154-329 (332)
147 3lxx_A GTPase IMAP family memb 99.8 4.5E-19 1.5E-23 158.3 12.6 168 114-284 28-214 (239)
148 2qpt_A EH domain-containing pr 99.8 5.7E-21 1.9E-25 190.1 -0.1 207 114-341 64-315 (550)
149 3izy_P Translation initiation 99.8 7.8E-21 2.7E-25 187.5 0.5 158 114-283 3-167 (537)
150 3mca_A HBS1, elongation factor 99.8 4.8E-20 1.6E-24 184.9 4.0 159 114-283 176-396 (592)
151 1kk1_A EIF2gamma; initiation o 99.8 5.8E-18 2E-22 163.0 18.3 161 114-284 9-200 (410)
152 2elf_A Protein translation elo 99.8 1.6E-18 5.4E-23 164.5 13.7 145 117-283 23-179 (370)
153 2c78_A Elongation factor TU-A; 99.8 9.6E-19 3.3E-23 168.3 12.0 160 114-284 10-212 (405)
154 2ywe_A GTP-binding protein LEP 99.8 1.7E-18 5.8E-23 172.9 13.8 158 115-284 6-184 (600)
155 1pui_A ENGB, probable GTP-bind 99.8 1.3E-17 4.4E-22 145.2 17.3 165 114-284 25-199 (210)
156 1s0u_A EIF-2-gamma, translatio 99.8 7.9E-18 2.7E-22 162.0 17.4 161 114-284 7-198 (408)
157 3cb4_D GTP-binding protein LEP 99.8 2.3E-18 8E-23 172.2 14.0 158 115-284 4-182 (599)
158 3dpu_A RAB family protein; roc 99.8 1E-18 3.5E-23 173.9 10.1 161 113-287 39-211 (535)
159 1d2e_A Elongation factor TU (E 99.8 9E-18 3.1E-22 161.1 16.3 158 116-284 4-195 (397)
160 2www_A Methylmalonic aciduria 99.8 1.5E-19 5E-24 170.5 3.6 186 115-321 74-316 (349)
161 1f60_A Elongation factor EEF1A 99.8 2E-19 6.9E-24 175.5 4.3 149 114-273 6-201 (458)
162 3p32_A Probable GTPase RV1496/ 99.8 5.3E-19 1.8E-23 167.1 6.7 184 114-317 78-317 (355)
163 3p26_A Elongation factor 1 alp 99.8 2.9E-18 1E-22 168.5 11.9 151 114-274 32-228 (483)
164 1zo1_I IF2, translation initia 99.8 7.1E-20 2.4E-24 179.2 -0.0 156 114-281 3-164 (501)
165 1zun_B Sulfate adenylate trans 99.7 1.8E-17 6.2E-22 160.7 16.0 148 116-274 25-214 (434)
166 1g7s_A Translation initiation 99.7 2.7E-18 9.4E-23 171.8 10.3 158 114-283 4-217 (594)
167 2j69_A Bacterial dynamin-like 99.7 5E-18 1.7E-22 173.3 10.5 162 114-283 68-324 (695)
168 2f9l_A RAB11B, member RAS onco 99.7 1.9E-17 6.5E-22 143.2 12.5 158 115-283 5-167 (199)
169 2h5e_A Peptide chain release f 99.7 4.7E-17 1.6E-21 161.0 16.7 117 114-241 12-149 (529)
170 3c5h_A Glucocorticoid receptor 99.7 1.9E-18 6.4E-23 156.0 5.8 167 113-282 17-253 (255)
171 1jny_A EF-1-alpha, elongation 99.7 1.9E-17 6.6E-22 160.5 12.8 150 114-274 5-203 (435)
172 1udx_A The GTP-binding protein 99.7 1.2E-17 4E-22 160.3 9.6 162 117-286 159-327 (416)
173 3vqt_A RF-3, peptide chain rel 99.7 6.5E-17 2.2E-21 160.7 15.1 117 114-241 30-167 (548)
174 2p67_A LAO/AO transport system 99.7 4.7E-18 1.6E-22 159.8 6.5 184 114-318 55-295 (341)
175 1dar_A EF-G, elongation factor 99.7 7.5E-17 2.6E-21 164.6 15.6 117 114-241 11-144 (691)
176 3avx_A Elongation factor TS, e 99.7 9E-17 3.1E-21 168.2 16.4 161 113-284 294-486 (1289)
177 3r7w_B Gtpase2, GTP-binding pr 99.7 4.8E-17 1.6E-21 150.5 12.4 159 117-283 1-173 (331)
178 4a9a_A Ribosome-interacting GT 99.7 4.5E-17 1.5E-21 153.9 11.5 119 116-238 73-194 (376)
179 2xex_A Elongation factor G; GT 99.7 8.1E-17 2.8E-21 164.4 13.6 117 114-241 9-142 (693)
180 2dy1_A Elongation factor G; tr 99.7 2.3E-16 7.9E-21 160.4 15.7 115 114-239 8-139 (665)
181 2rdo_7 EF-G, elongation factor 99.7 4.8E-16 1.6E-20 158.8 17.9 117 114-241 9-149 (704)
182 1nrj_B SR-beta, signal recogni 99.7 3.9E-17 1.3E-21 143.0 8.5 144 114-270 11-170 (218)
183 1oix_A RAS-related protein RAB 99.7 1.5E-16 5.3E-21 136.8 12.0 157 115-282 29-190 (191)
184 1h65_A Chloroplast outer envel 99.7 2.6E-16 8.8E-21 143.0 13.6 127 114-242 38-170 (270)
185 3t34_A Dynamin-related protein 99.7 9.1E-17 3.1E-21 152.1 9.7 160 114-277 33-254 (360)
186 1r5b_A Eukaryotic peptide chai 99.7 7.1E-17 2.4E-21 157.9 9.1 150 115-275 43-243 (467)
187 2qag_A Septin-2, protein NEDD5 99.6 5.4E-16 1.8E-20 146.7 11.9 165 115-283 37-236 (361)
188 3def_A T7I23.11 protein; chlor 99.6 9.2E-16 3.1E-20 138.8 12.3 125 114-240 35-165 (262)
189 3j25_A Tetracycline resistance 99.6 1.7E-16 5.9E-21 160.6 6.1 157 117-285 4-240 (638)
190 2qm8_A GTPase/ATPase; G protei 99.6 1.6E-16 5.6E-21 148.9 4.8 186 114-320 54-297 (337)
191 2ged_A SR-beta, signal recogni 99.6 6.8E-16 2.3E-20 132.3 7.1 125 114-250 47-180 (193)
192 2wsm_A Hydrogenase expression/ 99.6 4.2E-15 1.4E-19 130.3 9.8 153 114-284 29-214 (221)
193 1yrb_A ATP(GTP)binding protein 99.6 9E-15 3.1E-19 131.7 11.8 166 113-284 12-257 (262)
194 1jal_A YCHF protein; nucleotid 99.6 2.5E-14 8.6E-19 134.4 14.6 89 116-207 3-108 (363)
195 4fn5_A EF-G 1, elongation fact 99.6 3.8E-14 1.3E-18 145.2 16.0 116 114-240 12-151 (709)
196 2qag_C Septin-7; cell cycle, c 99.5 1.3E-13 4.4E-18 132.3 13.7 164 116-283 32-226 (418)
197 2dby_A GTP-binding protein; GD 99.5 4.4E-14 1.5E-18 133.4 9.3 86 117-207 3-111 (368)
198 2qnr_A Septin-2, protein NEDD5 99.5 1.4E-13 4.8E-18 126.9 11.1 162 116-282 19-212 (301)
199 1n0u_A EF-2, elongation factor 99.5 3.1E-14 1.1E-18 148.2 7.1 115 114-239 18-163 (842)
200 2hf9_A Probable hydrogenase ni 99.4 9.3E-13 3.2E-17 115.7 10.1 151 114-282 37-222 (226)
201 2ohf_A Protein OLA1, GTP-bindi 99.4 2.9E-13 9.9E-18 128.4 5.8 194 115-330 22-236 (396)
202 3ec1_A YQEH GTPase; atnos1, at 99.3 2.6E-14 9E-19 135.5 -4.1 149 116-271 163-318 (369)
203 1cip_A Protein (guanine nucleo 99.3 4.9E-12 1.7E-16 118.9 10.1 117 157-282 187-342 (353)
204 1tq4_A IIGP1, interferon-induc 99.3 1.5E-11 5.1E-16 117.7 13.2 190 114-313 68-288 (413)
205 3h2y_A GTPase family protein; 99.3 9.3E-14 3.2E-18 131.6 -2.1 144 116-266 161-312 (368)
206 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 2.3E-11 7.8E-16 115.6 11.2 89 115-207 20-127 (392)
207 4fid_A G protein alpha subunit 99.2 2.7E-11 9.4E-16 112.8 10.5 119 155-282 153-326 (340)
208 2qag_B Septin-6, protein NEDD5 99.2 1.2E-10 4.2E-15 111.4 13.8 146 117-265 44-217 (427)
209 3ohm_A Guanine nucleotide-bind 99.2 9.2E-11 3.2E-15 108.8 12.3 119 156-283 160-317 (327)
210 2j37_W Signal recognition part 99.2 1.7E-11 5.9E-16 120.0 6.9 160 114-281 100-310 (504)
211 2v3c_C SRP54, signal recogniti 99.2 2.3E-12 7.8E-17 124.3 0.2 191 116-324 100-355 (432)
212 3sop_A Neuronal-specific septi 99.1 5.1E-10 1.8E-14 101.4 11.4 132 116-250 3-164 (270)
213 1u0l_A Probable GTPase ENGC; p 99.0 8E-10 2.7E-14 101.7 10.0 132 130-280 32-169 (301)
214 1zcb_A G alpha I/13; GTP-bindi 98.9 1.1E-09 3.7E-14 103.2 7.9 117 157-282 195-351 (362)
215 1puj_A YLQF, conserved hypothe 98.9 2.1E-10 7.3E-15 104.5 1.9 60 114-176 119-178 (282)
216 1azs_C GS-alpha; complex (lyas 98.9 4E-09 1.4E-13 100.3 8.4 117 157-282 211-383 (402)
217 2xtz_A Guanine nucleotide-bind 98.9 3E-09 1E-13 99.8 7.2 113 161-282 181-343 (354)
218 3l82_B F-box only protein 4; T 98.8 2.2E-08 7.5E-13 86.1 9.5 100 185-284 115-223 (227)
219 3dm5_A SRP54, signal recogniti 98.8 4.8E-08 1.6E-12 93.9 12.0 148 114-274 99-281 (443)
220 1f5n_A Interferon-induced guan 98.7 9.4E-09 3.2E-13 102.3 6.5 61 114-176 37-104 (592)
221 1puj_A YLQF, conserved hypothe 98.7 7.3E-08 2.5E-12 87.7 9.5 101 168-282 4-104 (282)
222 2yv5_A YJEQ protein; hydrolase 98.6 9.7E-08 3.3E-12 87.7 9.0 85 191-280 75-165 (302)
223 3cnl_A YLQF, putative uncharac 98.6 1.4E-08 4.9E-13 91.4 3.3 58 116-176 100-157 (262)
224 3h2y_A GTPase family protein; 98.5 1.9E-07 6.5E-12 88.2 8.4 91 188-282 62-158 (368)
225 3l2o_B F-box only protein 4; s 98.5 2.8E-07 9.4E-12 83.1 8.3 98 187-284 202-308 (312)
226 3ec1_A YQEH GTPase; atnos1, at 98.5 3.3E-07 1.1E-11 86.6 9.0 91 189-283 65-161 (369)
227 3kl4_A SRP54, signal recogniti 98.4 3.8E-07 1.3E-11 87.6 8.5 145 115-272 97-278 (433)
228 3szr_A Interferon-induced GTP- 98.4 1.4E-06 4.7E-11 87.6 11.4 78 163-242 147-230 (608)
229 3cnl_A YLQF, putative uncharac 98.3 3.1E-07 1.1E-11 82.6 4.8 85 188-281 14-98 (262)
230 1j8m_F SRP54, signal recogniti 98.3 3E-06 1E-10 77.5 10.7 146 115-274 98-281 (297)
231 3q5d_A Atlastin-1; G protein, 98.1 5.8E-06 2E-10 79.6 8.4 64 112-176 64-153 (447)
232 2xxa_A Signal recognition part 98.0 2.3E-05 7.9E-10 75.3 10.6 118 115-240 100-254 (433)
233 1t9h_A YLOQ, probable GTPase E 97.8 1.2E-05 4.3E-10 73.6 4.4 83 192-277 83-170 (307)
234 3e70_C DPA, signal recognition 97.8 6.8E-05 2.3E-09 69.4 8.5 147 114-273 128-309 (328)
235 2yhs_A FTSY, cell division pro 97.7 0.0003 1E-08 68.3 12.0 122 114-239 292-451 (503)
236 1rj9_A FTSY, signal recognitio 97.6 0.00036 1.2E-08 63.8 11.5 121 115-239 102-260 (304)
237 1zu4_A FTSY; GTPase, signal re 97.6 0.00086 2.9E-08 61.8 13.2 120 115-240 105-268 (320)
238 2px0_A Flagellar biosynthesis 97.5 8.3E-05 2.8E-09 67.8 5.5 117 115-240 105-253 (296)
239 2rcn_A Probable GTPase ENGC; Y 97.5 0.00036 1.2E-08 65.1 8.9 80 193-278 128-213 (358)
240 1t9h_A YLOQ, probable GTPase E 97.3 5E-05 1.7E-09 69.6 1.6 55 117-175 175-236 (307)
241 4dzz_A Plasmid partitioning pr 97.3 0.00038 1.3E-08 59.2 6.6 112 117-240 3-144 (206)
242 2ffh_A Protein (FFH); SRP54, s 97.2 0.0012 4.2E-08 63.0 9.5 118 115-240 98-251 (425)
243 1vma_A Cell division protein F 97.2 0.0017 5.8E-08 59.4 10.0 22 115-136 104-125 (306)
244 1nij_A Hypothetical protein YJ 97.1 0.0026 9E-08 58.4 10.6 24 115-138 4-27 (318)
245 2rcn_A Probable GTPase ENGC; Y 97.1 0.00027 9.3E-09 66.0 3.9 24 117-140 217-240 (358)
246 2yv5_A YJEQ protein; hydrolase 97.0 0.00086 2.9E-08 61.2 6.2 22 117-139 167-188 (302)
247 3b9q_A Chloroplast SRP recepto 96.9 0.0045 1.5E-07 56.4 10.3 23 115-137 100-122 (302)
248 1u0l_A Probable GTPase ENGC; p 96.9 0.0007 2.4E-08 61.8 4.6 24 117-140 171-194 (301)
249 3ney_A 55 kDa erythrocyte memb 96.9 0.00023 8E-09 60.8 1.1 43 112-154 16-59 (197)
250 2og2_A Putative signal recogni 96.9 0.011 3.8E-07 55.1 12.6 122 115-240 157-317 (359)
251 1ls1_A Signal recognition part 96.7 0.0074 2.5E-07 54.7 9.9 118 115-240 98-251 (295)
252 3cwq_A Para family chromosome 96.7 0.0043 1.5E-07 53.2 7.8 111 117-240 2-134 (209)
253 1bif_A 6-phosphofructo-2-kinas 96.7 0.00018 6.1E-09 69.9 -1.5 102 115-222 39-147 (469)
254 3end_A Light-independent proto 96.6 0.0058 2E-07 55.5 8.6 67 162-238 156-225 (307)
255 4ido_A Atlastin-1; GTPase, GTP 96.5 0.0095 3.3E-07 57.1 9.1 23 114-136 66-88 (457)
256 1ye8_A Protein THEP1, hypothet 96.4 0.0013 4.5E-08 55.1 2.6 22 117-138 2-23 (178)
257 1kgd_A CASK, peripheral plasma 96.4 0.0016 5.4E-08 54.5 3.0 23 116-138 6-28 (180)
258 1lvg_A Guanylate kinase, GMP k 96.2 0.0017 6E-08 55.2 2.3 22 117-138 6-27 (198)
259 1ex7_A Guanylate kinase; subst 96.2 0.00093 3.2E-08 56.5 0.3 36 118-153 4-40 (186)
260 1zp6_A Hypothetical protein AT 96.1 0.0037 1.3E-07 52.3 3.6 23 116-138 10-32 (191)
261 1znw_A Guanylate kinase, GMP k 96.1 0.0026 8.9E-08 54.3 2.6 22 117-138 22-43 (207)
262 3tr0_A Guanylate kinase, GMP k 96.0 0.0032 1.1E-07 53.3 3.0 22 117-138 9-30 (205)
263 3c8u_A Fructokinase; YP_612366 96.0 0.0032 1.1E-07 53.8 3.0 24 115-138 22-45 (208)
264 3a00_A Guanylate kinase, GMP k 96.0 0.0026 8.9E-08 53.4 2.3 22 117-138 3-24 (186)
265 3tif_A Uncharacterized ABC tra 96.0 0.0037 1.3E-07 54.8 3.2 23 117-139 33-55 (235)
266 3kjh_A CO dehydrogenase/acetyl 96.0 0.003 1E-07 55.1 2.6 65 161-237 130-194 (254)
267 2pcj_A ABC transporter, lipopr 95.9 0.0039 1.3E-07 54.2 3.2 23 117-139 32-54 (224)
268 1z6g_A Guanylate kinase; struc 95.9 0.0032 1.1E-07 54.4 2.5 23 116-138 24-46 (218)
269 1s96_A Guanylate kinase, GMP k 95.8 0.004 1.4E-07 54.0 2.9 23 117-139 18-40 (219)
270 3ea0_A ATPase, para family; al 95.8 0.1 3.4E-06 45.1 12.1 68 163-241 119-187 (245)
271 4gp7_A Metallophosphoesterase; 95.8 0.0045 1.5E-07 51.2 2.9 21 117-137 11-31 (171)
272 3tau_A Guanylate kinase, GMP k 95.8 0.0047 1.6E-07 52.8 3.1 24 116-139 9-32 (208)
273 2onk_A Molybdate/tungstate ABC 95.8 0.0049 1.7E-07 54.2 3.2 24 116-139 25-48 (240)
274 2cbz_A Multidrug resistance-as 95.8 0.0051 1.8E-07 53.9 3.2 23 117-139 33-55 (237)
275 3q9l_A Septum site-determining 95.7 0.053 1.8E-06 47.4 9.9 66 162-238 113-185 (260)
276 4g1u_C Hemin import ATP-bindin 95.7 0.0053 1.8E-07 54.9 3.3 23 117-139 39-61 (266)
277 1g6h_A High-affinity branched- 95.7 0.0052 1.8E-07 54.6 3.2 23 117-139 35-57 (257)
278 3gfo_A Cobalt import ATP-bindi 95.7 0.0051 1.8E-07 55.2 3.2 23 117-139 36-58 (275)
279 1htw_A HI0065; nucleotide-bind 95.7 0.0046 1.6E-07 50.7 2.6 22 117-138 35-56 (158)
280 1b0u_A Histidine permease; ABC 95.7 0.0053 1.8E-07 54.7 3.2 23 117-139 34-56 (262)
281 2ff7_A Alpha-hemolysin translo 95.7 0.0056 1.9E-07 54.1 3.2 23 117-139 37-59 (247)
282 1sgw_A Putative ABC transporte 95.7 0.0052 1.8E-07 53.1 3.0 23 117-139 37-59 (214)
283 1mv5_A LMRA, multidrug resista 95.7 0.0056 1.9E-07 53.9 3.2 23 117-139 30-52 (243)
284 2pze_A Cystic fibrosis transme 95.7 0.0056 1.9E-07 53.4 3.2 23 117-139 36-58 (229)
285 1ji0_A ABC transporter; ATP bi 95.6 0.0061 2.1E-07 53.6 3.2 23 117-139 34-56 (240)
286 2olj_A Amino acid ABC transpor 95.6 0.0061 2.1E-07 54.4 3.2 23 117-139 52-74 (263)
287 3asz_A Uridine kinase; cytidin 95.6 0.0057 1.9E-07 52.1 2.8 23 116-138 7-29 (211)
288 1vpl_A ABC transporter, ATP-bi 95.6 0.0064 2.2E-07 54.0 3.2 23 117-139 43-65 (256)
289 2qi9_C Vitamin B12 import ATP- 95.6 0.0065 2.2E-07 53.7 3.2 23 117-139 28-50 (249)
290 2ghi_A Transport protein; mult 95.6 0.0065 2.2E-07 54.1 3.2 22 117-138 48-69 (260)
291 2j41_A Guanylate kinase; GMP, 95.6 0.0065 2.2E-07 51.4 3.1 24 116-139 7-30 (207)
292 2d2e_A SUFC protein; ABC-ATPas 95.6 0.0066 2.3E-07 53.6 3.2 22 117-138 31-52 (250)
293 1knq_A Gluconate kinase; ALFA/ 95.5 0.0081 2.8E-07 49.5 3.5 23 115-137 8-30 (175)
294 3b85_A Phosphate starvation-in 95.5 0.005 1.7E-07 52.9 2.2 22 117-138 24-45 (208)
295 2zu0_C Probable ATP-dependent 95.5 0.0068 2.3E-07 54.1 3.2 22 117-138 48-69 (267)
296 2ihy_A ABC transporter, ATP-bi 95.5 0.0068 2.3E-07 54.5 3.2 23 117-139 49-71 (279)
297 2ixe_A Antigen peptide transpo 95.5 0.007 2.4E-07 54.2 3.2 24 116-139 46-69 (271)
298 2nq2_C Hypothetical ABC transp 95.5 0.0074 2.5E-07 53.5 3.1 23 117-139 33-55 (253)
299 2yz2_A Putative ABC transporte 95.5 0.0076 2.6E-07 53.8 3.2 23 117-139 35-57 (266)
300 2eyu_A Twitching motility prot 95.4 0.0073 2.5E-07 53.8 3.1 25 114-138 24-48 (261)
301 2bbw_A Adenylate kinase 4, AK4 95.4 0.0083 2.9E-07 52.6 3.4 24 116-139 28-54 (246)
302 2i3b_A HCR-ntpase, human cance 95.4 0.0059 2E-07 51.6 2.3 22 117-138 3-24 (189)
303 2oze_A ORF delta'; para, walke 95.3 0.14 4.8E-06 45.9 11.3 68 162-240 154-226 (298)
304 2bdt_A BH3686; alpha-beta prot 95.3 0.007 2.4E-07 50.6 2.4 21 117-137 4-24 (189)
305 4eun_A Thermoresistant glucoki 95.3 0.0084 2.9E-07 50.8 2.9 22 116-137 30-51 (200)
306 2v9p_A Replication protein E1; 95.3 0.0082 2.8E-07 54.7 2.9 24 114-137 125-148 (305)
307 1kag_A SKI, shikimate kinase I 95.3 0.0076 2.6E-07 49.5 2.4 22 117-138 6-27 (173)
308 2pjz_A Hypothetical protein ST 95.2 0.0097 3.3E-07 53.1 3.2 23 117-139 32-54 (263)
309 2qor_A Guanylate kinase; phosp 95.2 0.0096 3.3E-07 50.6 3.0 22 116-137 13-34 (204)
310 3aez_A Pantothenate kinase; tr 95.2 0.01 3.4E-07 54.4 3.2 25 114-138 89-113 (312)
311 3lnc_A Guanylate kinase, GMP k 95.1 0.0078 2.7E-07 52.2 2.1 22 117-138 29-51 (231)
312 2bbs_A Cystic fibrosis transme 95.1 0.013 4.3E-07 53.1 3.6 25 115-139 64-88 (290)
313 3nh6_A ATP-binding cassette SU 95.1 0.0071 2.4E-07 55.2 1.8 24 115-138 80-103 (306)
314 1np6_A Molybdopterin-guanine d 95.1 0.011 3.8E-07 49.2 2.9 23 116-138 7-29 (174)
315 3lw7_A Adenylate kinase relate 95.0 0.013 4.3E-07 47.7 3.1 19 117-135 3-21 (179)
316 3tui_C Methionine import ATP-b 95.0 0.012 4.2E-07 54.9 3.2 24 116-139 55-78 (366)
317 4a74_A DNA repair and recombin 95.0 0.0097 3.3E-07 51.1 2.4 21 117-137 27-47 (231)
318 3fvq_A Fe(3+) IONS import ATP- 95.0 0.012 4.2E-07 54.8 3.2 23 117-139 32-54 (359)
319 3zq6_A Putative arsenical pump 94.9 1.2 4E-05 40.5 16.5 83 197-281 223-317 (324)
320 3uie_A Adenylyl-sulfate kinase 94.9 0.013 4.5E-07 49.5 3.1 24 115-138 25-48 (200)
321 1y63_A LMAJ004144AAA protein; 94.9 0.018 6E-07 48.1 3.8 25 114-138 9-33 (184)
322 3kb2_A SPBC2 prophage-derived 94.9 0.014 4.7E-07 47.6 3.0 21 117-137 3-23 (173)
323 3ec2_A DNA replication protein 94.9 0.0092 3.2E-07 49.5 1.9 22 117-138 40-61 (180)
324 2jeo_A Uridine-cytidine kinase 94.9 0.013 4.5E-07 51.3 3.0 24 114-137 24-47 (245)
325 3jvv_A Twitching mobility prot 94.9 0.013 4.5E-07 54.6 3.1 24 114-137 122-145 (356)
326 2qt1_A Nicotinamide riboside k 94.9 0.02 6.8E-07 48.6 3.9 23 116-138 22-44 (207)
327 1d2n_A N-ethylmaleimide-sensit 94.8 0.14 4.9E-06 45.2 9.8 25 114-138 63-87 (272)
328 1z47_A CYSA, putative ABC-tran 94.8 0.014 4.8E-07 54.3 3.2 23 117-139 43-65 (355)
329 3ug7_A Arsenical pump-driving 94.8 0.9 3.1E-05 41.8 15.6 85 196-282 237-333 (349)
330 2ehv_A Hypothetical protein PH 94.8 0.013 4.6E-07 50.9 2.8 21 117-137 32-52 (251)
331 2f1r_A Molybdopterin-guanine d 94.8 0.0061 2.1E-07 50.7 0.6 22 117-138 4-25 (171)
332 2yyz_A Sugar ABC transporter, 94.8 0.015 5.1E-07 54.3 3.2 23 117-139 31-53 (359)
333 3rlf_A Maltose/maltodextrin im 94.8 0.015 5.2E-07 54.6 3.2 23 117-139 31-53 (381)
334 1sq5_A Pantothenate kinase; P- 94.8 0.016 5.4E-07 52.8 3.2 25 114-138 79-103 (308)
335 2it1_A 362AA long hypothetical 94.7 0.016 5.3E-07 54.2 3.2 23 117-139 31-53 (362)
336 1ly1_A Polynucleotide kinase; 94.7 0.017 5.8E-07 47.4 3.1 21 117-137 4-24 (181)
337 2if2_A Dephospho-COA kinase; a 94.7 0.014 4.7E-07 49.4 2.6 21 117-137 3-23 (204)
338 1kht_A Adenylate kinase; phosp 94.7 0.018 6E-07 47.9 3.2 22 116-137 4-25 (192)
339 1cke_A CK, MSSA, protein (cyti 94.7 0.014 4.7E-07 50.2 2.6 22 116-137 6-27 (227)
340 1jjv_A Dephospho-COA kinase; P 94.7 0.018 6.1E-07 48.8 3.3 21 117-137 4-24 (206)
341 1g29_1 MALK, maltose transport 94.7 0.017 5.7E-07 54.2 3.2 23 117-139 31-53 (372)
342 2wwf_A Thymidilate kinase, put 94.7 0.023 7.9E-07 48.1 3.9 24 114-137 9-32 (212)
343 1qhx_A CPT, protein (chloramph 94.6 0.021 7E-07 47.0 3.4 21 117-137 5-25 (178)
344 1v43_A Sugar-binding transport 94.6 0.017 5.8E-07 54.1 3.2 24 116-139 38-61 (372)
345 4b4t_L 26S protease subunit RP 94.6 0.093 3.2E-06 50.1 8.3 22 117-138 217-238 (437)
346 2kjq_A DNAA-related protein; s 94.6 0.015 5E-07 47.1 2.3 22 117-138 38-59 (149)
347 3tqc_A Pantothenate kinase; bi 94.6 0.019 6.5E-07 52.7 3.3 24 114-137 91-114 (321)
348 2pt7_A CAG-ALFA; ATPase, prote 94.6 0.016 5.4E-07 53.4 2.8 22 117-138 173-194 (330)
349 2gza_A Type IV secretion syste 94.6 0.017 5.9E-07 53.9 3.1 23 116-138 176-198 (361)
350 4b4t_K 26S protease regulatory 94.5 0.094 3.2E-06 50.0 8.1 22 117-138 208-229 (428)
351 2vp4_A Deoxynucleoside kinase; 94.5 0.022 7.4E-07 49.4 3.4 25 114-138 19-43 (230)
352 2rhm_A Putative kinase; P-loop 94.5 0.022 7.5E-07 47.4 3.3 22 116-137 6-27 (193)
353 3vaa_A Shikimate kinase, SK; s 94.5 0.022 7.5E-07 48.1 3.4 21 117-137 27-47 (199)
354 3t61_A Gluconokinase; PSI-biol 94.5 0.022 7.4E-07 48.1 3.3 21 117-137 20-40 (202)
355 1rz3_A Hypothetical protein rb 94.5 0.021 7.2E-07 48.4 3.2 23 115-137 22-44 (201)
356 2qz4_A Paraplegin; AAA+, SPG7, 94.5 0.26 8.8E-06 42.9 10.5 21 117-137 41-61 (262)
357 2xj4_A MIPZ; replication, cell 94.5 0.034 1.2E-06 49.8 4.7 33 163-206 104-136 (286)
358 1lw7_A Transcriptional regulat 94.5 0.013 4.4E-07 54.7 1.9 24 115-138 170-193 (365)
359 2cdn_A Adenylate kinase; phosp 94.5 0.026 8.9E-07 47.6 3.7 24 114-137 19-42 (201)
360 1tev_A UMP-CMP kinase; ploop, 94.5 0.021 7.3E-07 47.4 3.1 22 116-137 4-25 (196)
361 2plr_A DTMP kinase, probable t 94.4 0.023 7.9E-07 48.0 3.4 23 115-137 4-26 (213)
362 3cm0_A Adenylate kinase; ATP-b 94.4 0.021 7.3E-07 47.3 3.1 22 116-137 5-26 (186)
363 3gd7_A Fusion complex of cysti 94.4 0.02 6.9E-07 54.0 3.2 23 117-139 49-71 (390)
364 2ewv_A Twitching motility prot 94.4 0.019 6.3E-07 53.9 2.9 24 114-137 135-158 (372)
365 1odf_A YGR205W, hypothetical 3 94.4 0.022 7.6E-07 51.5 3.3 24 114-137 30-53 (290)
366 3iij_A Coilin-interacting nucl 94.4 0.026 8.9E-07 46.6 3.5 22 115-136 11-32 (180)
367 1nks_A Adenylate kinase; therm 94.4 0.022 7.7E-07 47.2 3.1 21 117-137 3-23 (194)
368 2jaq_A Deoxyguanosine kinase; 94.3 0.023 7.8E-07 47.7 3.1 21 117-137 2-22 (205)
369 4b4t_J 26S protease regulatory 94.3 0.17 5.7E-06 47.8 9.2 22 117-138 184-205 (405)
370 3d31_A Sulfate/molybdate ABC t 94.3 0.015 5E-07 54.1 1.8 23 117-139 28-50 (348)
371 1uf9_A TT1252 protein; P-loop, 94.3 0.027 9.4E-07 47.2 3.4 25 114-138 7-31 (203)
372 2x8a_A Nuclear valosin-contain 94.2 0.019 6.4E-07 51.4 2.4 21 118-138 47-67 (274)
373 4e22_A Cytidylate kinase; P-lo 94.2 0.029 9.8E-07 49.5 3.5 21 116-136 28-48 (252)
374 1p9r_A General secretion pathw 94.2 0.022 7.6E-07 54.2 3.0 25 114-138 166-190 (418)
375 1xjc_A MOBB protein homolog; s 94.2 0.027 9.4E-07 46.6 3.2 22 116-137 5-26 (169)
376 2yvu_A Probable adenylyl-sulfa 94.2 0.034 1.1E-06 46.2 3.8 24 114-137 12-35 (186)
377 4b4t_H 26S protease regulatory 94.1 0.15 5.2E-06 48.9 8.6 22 117-138 245-266 (467)
378 2c95_A Adenylate kinase 1; tra 94.1 0.03 1E-06 46.7 3.4 22 116-137 10-31 (196)
379 2oap_1 GSPE-2, type II secreti 94.1 0.023 8E-07 55.5 2.9 22 117-138 262-283 (511)
380 2v54_A DTMP kinase, thymidylat 94.1 0.032 1.1E-06 46.9 3.4 23 116-138 5-27 (204)
381 3zvl_A Bifunctional polynucleo 94.1 0.12 4.1E-06 49.0 7.8 24 115-138 258-281 (416)
382 3fb4_A Adenylate kinase; psych 94.1 0.028 9.4E-07 47.9 3.0 21 117-137 2-22 (216)
383 1oxx_K GLCV, glucose, ABC tran 94.0 0.014 4.7E-07 54.4 1.2 23 117-139 33-55 (353)
384 1gvn_B Zeta; postsegregational 94.0 0.034 1.2E-06 50.1 3.7 24 114-137 32-55 (287)
385 1ukz_A Uridylate kinase; trans 94.0 0.039 1.3E-06 46.5 3.9 23 115-137 15-37 (203)
386 3trf_A Shikimate kinase, SK; a 94.0 0.031 1.1E-06 46.3 3.2 20 117-136 7-26 (185)
387 1nn5_A Similar to deoxythymidy 94.0 0.033 1.1E-06 47.1 3.4 23 115-137 9-31 (215)
388 3kta_A Chromosome segregation 94.0 0.031 1.1E-06 46.2 3.1 22 116-137 27-48 (182)
389 2vli_A Antibiotic resistance p 94.0 0.023 8E-07 46.8 2.3 22 115-136 5-26 (183)
390 3dl0_A Adenylate kinase; phosp 93.9 0.03 1E-06 47.7 3.0 21 117-137 2-22 (216)
391 1ixz_A ATP-dependent metallopr 93.9 0.023 7.9E-07 49.8 2.4 21 118-138 52-72 (254)
392 1aky_A Adenylate kinase; ATP:A 93.9 0.034 1.2E-06 47.6 3.3 22 116-137 5-26 (220)
393 3t15_A Ribulose bisphosphate c 93.9 0.091 3.1E-06 47.3 6.2 21 117-137 38-58 (293)
394 3ozx_A RNAse L inhibitor; ATP 93.8 0.038 1.3E-06 54.4 3.9 23 117-139 27-49 (538)
395 1zd8_A GTP:AMP phosphotransfer 93.8 0.035 1.2E-06 47.9 3.1 21 116-136 8-28 (227)
396 2pez_A Bifunctional 3'-phospho 93.8 0.037 1.3E-06 45.6 3.2 23 115-137 5-27 (179)
397 3h4m_A Proteasome-activating n 93.7 0.2 6.9E-06 44.3 8.3 22 116-137 52-73 (285)
398 2npi_A Protein CLP1; CLP1-PCF1 93.7 0.026 9E-07 54.4 2.5 25 114-138 137-161 (460)
399 4b4t_I 26S protease regulatory 93.7 0.21 7E-06 47.5 8.5 22 117-138 218-239 (437)
400 2obl_A ESCN; ATPase, hydrolase 93.7 0.03 1E-06 51.9 2.8 26 113-138 69-94 (347)
401 2w0m_A SSO2452; RECA, SSPF, un 93.7 0.028 9.6E-07 48.1 2.4 22 117-138 25-46 (235)
402 1yqt_A RNAse L inhibitor; ATP- 93.7 0.033 1.1E-06 54.8 3.2 23 117-139 49-71 (538)
403 1jbk_A CLPB protein; beta barr 93.6 0.043 1.5E-06 44.9 3.4 23 116-138 44-66 (195)
404 1qf9_A UMP/CMP kinase, protein 93.6 0.048 1.7E-06 45.1 3.7 22 116-137 7-28 (194)
405 1via_A Shikimate kinase; struc 93.6 0.035 1.2E-06 45.6 2.7 21 117-137 6-26 (175)
406 3tlx_A Adenylate kinase 2; str 93.5 0.041 1.4E-06 48.1 3.3 24 114-137 28-51 (243)
407 1zak_A Adenylate kinase; ATP:A 93.5 0.039 1.3E-06 47.3 3.1 22 116-137 6-27 (222)
408 2bwj_A Adenylate kinase 5; pho 93.5 0.037 1.3E-06 46.2 2.8 22 116-137 13-34 (199)
409 2pt5_A Shikimate kinase, SK; a 93.5 0.042 1.4E-06 44.6 3.1 21 117-137 2-22 (168)
410 2chg_A Replication factor C sm 93.5 0.18 6E-06 42.2 7.1 21 117-137 40-60 (226)
411 1cr0_A DNA primase/helicase; R 93.4 0.031 1.1E-06 50.3 2.4 22 117-138 37-58 (296)
412 1in4_A RUVB, holliday junction 93.4 0.032 1.1E-06 51.3 2.4 22 117-138 53-74 (334)
413 1iy2_A ATP-dependent metallopr 93.4 0.033 1.1E-06 49.7 2.4 21 118-138 76-96 (278)
414 3umf_A Adenylate kinase; rossm 93.4 0.061 2.1E-06 46.4 3.9 23 115-137 29-51 (217)
415 2p5t_B PEZT; postsegregational 93.3 0.037 1.3E-06 48.7 2.6 24 114-137 31-54 (253)
416 2iyv_A Shikimate kinase, SK; t 93.3 0.04 1.4E-06 45.6 2.7 21 117-137 4-24 (184)
417 3qf7_A RAD50; ABC-ATPase, ATPa 93.3 0.17 5.8E-06 47.1 7.3 20 117-136 25-44 (365)
418 4b4t_M 26S protease regulatory 93.3 0.068 2.3E-06 51.0 4.6 22 117-138 217-238 (434)
419 1vht_A Dephospho-COA kinase; s 93.3 0.048 1.7E-06 46.5 3.3 22 116-137 5-26 (218)
420 1e4v_A Adenylate kinase; trans 93.3 0.045 1.5E-06 46.6 3.0 21 117-137 2-22 (214)
421 2pbr_A DTMP kinase, thymidylat 93.3 0.047 1.6E-06 45.3 3.1 21 117-137 2-22 (195)
422 3j16_B RLI1P; ribosome recycli 93.2 0.043 1.5E-06 54.8 3.2 23 117-139 105-127 (608)
423 3b60_A Lipid A export ATP-bind 93.2 0.049 1.7E-06 54.1 3.5 25 115-139 369-393 (582)
424 3be4_A Adenylate kinase; malar 93.2 0.043 1.5E-06 47.0 2.8 22 116-137 6-27 (217)
425 3a4m_A L-seryl-tRNA(SEC) kinas 93.1 0.051 1.7E-06 48.0 3.2 22 116-137 5-26 (260)
426 2z0h_A DTMP kinase, thymidylat 93.1 0.047 1.6E-06 45.5 2.8 21 117-137 2-22 (197)
427 3euj_A Chromosome partition pr 93.1 0.039 1.3E-06 53.4 2.6 22 116-137 30-51 (483)
428 1gtv_A TMK, thymidylate kinase 93.1 0.022 7.6E-07 48.3 0.8 21 117-137 2-22 (214)
429 3bk7_A ABC transporter ATP-bin 93.0 0.048 1.7E-06 54.4 3.2 24 116-139 118-141 (607)
430 1uj2_A Uridine-cytidine kinase 93.0 0.057 1.9E-06 47.4 3.3 24 114-137 21-44 (252)
431 1f2t_A RAD50 ABC-ATPase; DNA d 92.9 0.061 2.1E-06 43.3 3.2 21 116-136 24-44 (149)
432 3b5x_A Lipid A export ATP-bind 92.9 0.055 1.9E-06 53.8 3.4 25 115-139 369-393 (582)
433 2f6r_A COA synthase, bifunctio 92.9 0.071 2.4E-06 47.7 3.9 23 114-136 74-96 (281)
434 2yl4_A ATP-binding cassette SU 92.9 0.049 1.7E-06 54.3 3.0 25 115-139 370-394 (595)
435 1e6c_A Shikimate kinase; phosp 92.9 0.054 1.8E-06 44.1 2.8 21 117-137 4-24 (173)
436 2cvh_A DNA repair and recombin 92.9 0.056 1.9E-06 45.8 3.0 21 117-137 22-42 (220)
437 2ze6_A Isopentenyl transferase 92.8 0.051 1.8E-06 47.9 2.8 21 117-137 3-23 (253)
438 3ozx_A RNAse L inhibitor; ATP 92.8 0.054 1.8E-06 53.3 3.2 23 117-139 296-318 (538)
439 2dpy_A FLII, flagellum-specifi 92.8 0.054 1.8E-06 51.9 3.1 28 111-138 153-180 (438)
440 3qf4_B Uncharacterized ABC tra 92.8 0.054 1.8E-06 54.0 3.2 25 115-139 381-405 (598)
441 3sr0_A Adenylate kinase; phosp 92.8 0.061 2.1E-06 45.9 3.1 21 117-137 2-22 (206)
442 1m7g_A Adenylylsulfate kinase; 92.7 0.068 2.3E-06 45.4 3.4 23 115-137 25-47 (211)
443 1n0w_A DNA repair protein RAD5 92.7 0.047 1.6E-06 47.1 2.4 22 117-138 26-47 (243)
444 2xb4_A Adenylate kinase; ATP-b 92.7 0.061 2.1E-06 46.3 3.1 21 117-137 2-22 (223)
445 1ak2_A Adenylate kinase isoenz 92.7 0.069 2.4E-06 46.2 3.4 22 116-137 17-38 (233)
446 3r20_A Cytidylate kinase; stru 92.7 0.064 2.2E-06 46.8 3.2 22 115-136 9-30 (233)
447 3nwj_A ATSK2; P loop, shikimat 92.7 0.06 2E-06 47.5 3.0 22 116-137 49-70 (250)
448 1yqt_A RNAse L inhibitor; ATP- 92.7 0.058 2E-06 53.1 3.2 24 116-139 313-336 (538)
449 4a82_A Cystic fibrosis transme 92.7 0.045 1.5E-06 54.3 2.4 25 115-139 367-391 (578)
450 3k9g_A PF-32 protein; ssgcid, 92.6 0.25 8.6E-06 43.4 7.1 66 162-238 144-209 (267)
451 3bos_A Putative DNA replicatio 92.6 0.07 2.4E-06 45.6 3.3 23 115-137 52-74 (242)
452 4eaq_A DTMP kinase, thymidylat 92.5 0.086 2.9E-06 45.7 3.8 24 114-137 25-48 (229)
453 2p65_A Hypothetical protein PF 92.5 0.056 1.9E-06 44.2 2.5 22 116-137 44-65 (187)
454 1svm_A Large T antigen; AAA+ f 92.5 0.061 2.1E-06 50.4 3.0 23 115-137 169-191 (377)
455 1lv7_A FTSH; alpha/beta domain 92.4 0.056 1.9E-06 47.4 2.4 22 117-138 47-68 (257)
456 3bk7_A ABC transporter ATP-bin 92.4 0.066 2.3E-06 53.5 3.2 23 117-139 384-406 (607)
457 3qf4_A ABC transporter, ATP-bi 92.4 0.06 2.1E-06 53.5 2.9 24 115-138 369-392 (587)
458 1zuh_A Shikimate kinase; alpha 92.3 0.075 2.6E-06 43.2 3.0 21 117-137 9-29 (168)
459 1q3t_A Cytidylate kinase; nucl 92.3 0.083 2.8E-06 45.8 3.4 24 114-137 15-38 (236)
460 1xwi_A SKD1 protein; VPS4B, AA 92.3 0.2 6.8E-06 45.7 6.1 21 117-137 47-67 (322)
461 2w58_A DNAI, primosome compone 92.2 0.085 2.9E-06 44.3 3.2 22 116-137 55-76 (202)
462 3u61_B DNA polymerase accessor 92.1 0.6 2E-05 42.1 9.1 21 117-137 50-70 (324)
463 2grj_A Dephospho-COA kinase; T 92.1 0.09 3.1E-06 44.3 3.2 24 114-137 11-34 (192)
464 3j16_B RLI1P; ribosome recycli 91.9 0.082 2.8E-06 52.8 3.2 23 117-139 380-402 (608)
465 3vfd_A Spastin; ATPase, microt 91.8 0.58 2E-05 43.7 8.8 22 116-137 149-170 (389)
466 1nlf_A Regulatory protein REPA 91.4 0.095 3.2E-06 46.6 2.8 21 117-137 32-52 (279)
467 2qmh_A HPR kinase/phosphorylas 91.4 0.15 5.1E-06 43.3 3.8 23 117-139 36-58 (205)
468 3hu3_A Transitional endoplasmi 91.3 0.25 8.5E-06 47.9 5.8 22 116-137 239-260 (489)
469 3cf2_A TER ATPase, transitiona 91.2 0.38 1.3E-05 49.4 7.3 22 117-138 240-261 (806)
470 1njg_A DNA polymerase III subu 91.2 0.11 3.8E-06 44.0 2.9 21 117-137 47-67 (250)
471 3n70_A Transport activator; si 91.1 0.12 4E-06 41.1 2.8 22 117-138 26-47 (145)
472 3syl_A Protein CBBX; photosynt 91.1 0.14 4.9E-06 45.8 3.7 23 115-137 67-89 (309)
473 3qks_A DNA double-strand break 91.0 0.13 4.4E-06 43.6 3.2 21 116-136 24-44 (203)
474 1ltq_A Polynucleotide kinase; 91.0 0.12 4.1E-06 46.3 3.1 21 117-137 4-24 (301)
475 1tue_A Replication protein E1; 91.0 0.11 3.6E-06 44.5 2.5 20 117-136 60-79 (212)
476 3ake_A Cytidylate kinase; CMP 91.0 0.13 4.3E-06 43.2 3.0 21 117-137 4-24 (208)
477 3b9p_A CG5977-PA, isoform A; A 90.9 0.14 4.7E-06 45.8 3.4 22 116-137 55-76 (297)
478 4f4c_A Multidrug resistance pr 90.9 0.08 2.7E-06 57.7 2.1 21 117-137 1107-1127(1321)
479 3exa_A TRNA delta(2)-isopenten 90.9 0.14 4.7E-06 46.7 3.3 22 116-137 4-25 (322)
480 1sxj_E Activator 1 40 kDa subu 90.8 0.092 3.1E-06 48.2 2.2 21 117-137 38-58 (354)
481 1qhl_A Protein (cell division 90.7 0.017 5.9E-07 50.2 -2.7 22 117-138 29-50 (227)
482 2b8t_A Thymidine kinase; deoxy 90.7 0.35 1.2E-05 41.7 5.6 41 197-240 89-130 (223)
483 4fcw_A Chaperone protein CLPB; 90.7 0.17 5.9E-06 45.3 3.8 21 117-137 49-69 (311)
484 2qby_A CDC6 homolog 1, cell di 90.7 0.12 4E-06 47.7 2.7 24 115-138 45-68 (386)
485 2ph1_A Nucleotide-binding prot 90.6 0.79 2.7E-05 40.1 8.1 67 161-238 127-194 (262)
486 2dr3_A UPF0273 protein PH0284; 90.5 0.13 4.5E-06 44.3 2.8 20 117-136 25-44 (247)
487 2iw3_A Elongation factor 3A; a 90.5 0.076 2.6E-06 55.7 1.4 23 117-139 701-723 (986)
488 3tqf_A HPR(Ser) kinase; transf 90.5 0.17 5.9E-06 41.9 3.3 24 117-140 18-41 (181)
489 3bfv_A CAPA1, CAPB2, membrane 90.4 0.35 1.2E-05 42.9 5.6 65 163-239 192-257 (271)
490 3cf0_A Transitional endoplasmi 90.4 0.16 5.6E-06 45.7 3.4 21 117-137 51-71 (301)
491 2ocp_A DGK, deoxyguanosine kin 90.4 0.16 5.5E-06 44.0 3.2 22 116-137 3-24 (241)
492 1fnn_A CDC6P, cell division co 90.3 0.13 4.3E-06 47.7 2.6 22 117-138 46-67 (389)
493 1a7j_A Phosphoribulokinase; tr 90.3 0.1 3.6E-06 46.9 2.0 23 115-137 5-27 (290)
494 3d8b_A Fidgetin-like protein 1 90.2 0.44 1.5E-05 44.0 6.2 22 116-137 118-139 (357)
495 3gmt_A Adenylate kinase; ssgci 90.2 0.17 5.8E-06 44.0 3.1 23 115-137 8-30 (230)
496 1l8q_A Chromosomal replication 90.1 0.17 5.9E-06 45.9 3.3 22 116-137 38-59 (324)
497 4aby_A DNA repair protein RECN 90.1 0.052 1.8E-06 51.3 -0.3 20 117-136 62-81 (415)
498 2zan_A Vacuolar protein sortin 90.0 0.63 2.1E-05 44.4 7.4 22 116-137 168-189 (444)
499 1zcb_A G alpha I/13; GTP-bindi 90.0 0.18 6.2E-06 46.9 3.4 22 114-135 32-53 (362)
500 3co5_A Putative two-component 90.0 0.12 4.3E-06 40.9 2.0 22 117-138 29-50 (143)
No 1
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=100.00 E-value=6.3e-35 Score=271.40 Aligned_cols=231 Identities=35% Similarity=0.529 Sum_probs=197.1
Q ss_pred CCCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhh-hhhhHHHHHH
Q 018949 110 HPNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKK-IHMLDSMMMK 187 (348)
Q Consensus 110 ~~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~-~~~l~~~~~~ 187 (348)
.++...+.|+++|.+|||||||+|+|++.++..+++.+++|+.....+...+ +.++.+|||||+.+.. ...+...+..
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 3455677999999999999999999999999888999999999998888887 8999999999985432 1456666777
Q ss_pred HHHhhccCccEEEEEecCCCCCchHHHHH-HHhcccccCCCCEEEEEeccCCC-ChhhHHHHHHHHHhcC-CCCeEEEec
Q 018949 188 NVRSAGINADCIVVLVDACKAPERIDEIL-EEGVGDHKDKLPILLVLNKKDLI-KPGEIAKKLEWYEKFT-DVDEVIPVS 264 (348)
Q Consensus 188 ~~~~~~~~ad~iv~VvD~~~~~~~~~~~~-~~~~~~~~~~~p~ivv~NK~Dl~-~~~~~~~~~~~~~~~~-~~~~i~~vS 264 (348)
.+..++..+|++++|+|++++.......+ ...+.. .+.|+++|+||+|+. +..........+.... ...+++++|
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~--~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vS 162 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP--LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPIS 162 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG--GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECB
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh--cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEe
Confidence 78888999999999999998775555554 666666 679999999999998 5665566666666665 466899999
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCchHHHHHHHHHHHHHhhccCCCCceEEEEeeEEEecc---ceEEEee
Q 018949 265 AKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTFQHWL---IFVEFNA 341 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~~eip~~~~~~~~~~~~~~---~~~~~~~ 341 (348)
|++|.|+++|++.|.+.++..++.++.+..++.+.+++++|++|+++++.+++|+||++.+.++.|.++. ...+|++
T Consensus 163 A~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~~~~~~~~~~~i~a 242 (308)
T 3iev_A 163 ALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIKG 242 (308)
T ss_dssp TTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEECSSCTTSEEEEE
T ss_pred CCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEEEccCCCCeEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999865 5556654
Q ss_pred e
Q 018949 342 F 342 (348)
Q Consensus 342 ~ 342 (348)
.
T Consensus 243 ~ 243 (308)
T 3iev_A 243 E 243 (308)
T ss_dssp E
T ss_pred E
Confidence 4
No 2
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=100.00 E-value=7e-34 Score=263.28 Aligned_cols=225 Identities=33% Similarity=0.463 Sum_probs=190.0
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+.++|+++|++|||||||+|+|++.++..+++.++||++....++..++.++.+|||||+.+ ....+...+...+..+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~-~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHK-PMDALGEFMDQEVYEA 83 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCC-CCSHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccc-hhhHHHHHHHHHHHHH
Confidence 467799999999999999999999999887888999999888888888889999999999854 3345666677788889
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh-HHHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
+..+|++++|+|++++....+.++...++....+.|+++|+||+|+..... +......+ .+..+++++||++|.|+
T Consensus 84 l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~iSA~~g~gv 160 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL---LPEAEPRMLSALDERQV 160 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT---STTSEEEECCTTCHHHH
T ss_pred HhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh---cCcCcEEEEeCCCCCCH
Confidence 999999999999998877777777766665323799999999999986554 43333333 45568999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCccc-CCCchHHHHHHHHHHHHHhhccCCCCceEEEEeeEEEec-cceEEEee
Q 018949 272 EDIRDWILTKLPLGPAYYPKDIV-SEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTFQHW-LIFVEFNA 341 (348)
Q Consensus 272 ~eL~~~i~~~l~~~~~~~~~~~~-~~~~~~~~~~e~ire~~~~~~~~eip~~~~~~~~~~~~~-~~~~~~~~ 341 (348)
++|++.|.+.++..++.|+.+.. ++.+.++...|.+|+++++.+++++||.+.+.++.|..+ ....++.+
T Consensus 161 ~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~~~~~~~~~i~~ 232 (301)
T 1wf3_A 161 AELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKA 232 (301)
T ss_dssp HHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEEETTTEEEEEE
T ss_pred HHHHHHHHHhcccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCceEEEEEEEEEecCCCeEEEEE
Confidence 99999999999999999998888 899999999999999999999999999999999999973 34455554
No 3
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=100.00 E-value=5.1e-32 Score=250.92 Aligned_cols=226 Identities=31% Similarity=0.535 Sum_probs=189.6
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+.++|+|+|++|||||||+|+|++.++.+++..+++|++...+++..++.++.+|||||+.......+...+...+..+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 46678999999999999999999999988788889999988888888888999999999975223344444555556677
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC-hhhHHHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK-PGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
+..+|++++|+|+++ ......++...+.. .+.|+++|+||+|+.. ..........+....+..+++++||++|.|+
T Consensus 86 l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-WTPDDEMVLNKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp CCCEEEEEEEEETTC-CCHHHHHHHHHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HhcCCEEEEEEeCCC-CCHHHHHHHHHHHh--cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 899999999999987 77667777776665 6799999999999987 4555555666666556567999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCcccCCCchHHHHHHHHHHHHHhhccCCCCceEEEEeeEEEec-cceEEEee
Q 018949 272 EDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTFQHW-LIFVEFNA 341 (348)
Q Consensus 272 ~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~~eip~~~~~~~~~~~~~-~~~~~~~~ 341 (348)
++|++.+.+.++..++.|+.+..++.+.++...|++|+++++.+.+++||...+.++.|.++ .+.+++.+
T Consensus 163 ~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~~~~~~~~~~~~i~~ 233 (301)
T 1ega_A 163 DTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDING 233 (301)
T ss_dssp HHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEECCSSCSEEEEE
T ss_pred HHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEEEEecCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999853 23454443
No 4
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.91 E-value=6.1e-24 Score=187.21 Aligned_cols=170 Identities=22% Similarity=0.215 Sum_probs=126.5
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCc-eeeecCCCCceEEeEEEEEe-CCCeeEEEEeCCCCchhhhh-hhH---HHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIH-MLD---SMMM 186 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~-~l~---~~~~ 186 (348)
...++|+++|.+|+|||||+|+|++.. ...++..+++|.......+. .++..+.+|||||+...... ... ..+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 345699999999999999999999987 45677888888887655555 66788999999997542110 001 1122
Q ss_pred HHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHH----HHHHhc-----CCC
Q 018949 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL----EWYEKF-----TDV 257 (348)
Q Consensus 187 ~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~----~~~~~~-----~~~ 257 (348)
..+......+|++++|+|++++.......+...+.. .+.|+++|+||+|+.......... ..+... ...
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 184 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGK 184 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCC
Confidence 333344566899999999998877777777777766 679999999999998866543322 233332 345
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 258 DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 258 ~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
.+++++||++|.|+++|+++|.+.++.
T Consensus 185 ~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 185 LTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp EEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred CeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 689999999999999999999998865
No 5
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=7.8e-25 Score=214.04 Aligned_cols=209 Identities=24% Similarity=0.248 Sum_probs=118.3
Q ss_pred hhhhccccCCCCc-cCCcCCccccccccCCCCCC-CCCCChhhhhhccccCCCCCCccEEEEEcCCCCChHHHHHHHhCC
Q 018949 61 WSNQREMDLDDGD-EMEFDDASSFLSLSEKPDRN-MASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 61 ~~~~~e~~~d~~e-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..+.+|+.+||.| |.+..+...+.......... ............. ....+|+++|.+|||||||+|+|++.
T Consensus 183 ~~a~iea~iDf~eedi~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~------r~~~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 183 SCALIELELDFSEEDVEFQSRDELTMQIETLRSEVNRLIDSYQHGRIV------SEGVSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp HHHTTTTCSSCCSSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHCEEEEEECCTTSSHHHHHHHCC--
T ss_pred HHHHhheecCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhHhh------cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456788899966 44444554443322222111 1111111111111 12347999999999999999999999
Q ss_pred ceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCch----HHH
Q 018949 139 KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER----IDE 214 (348)
Q Consensus 139 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~----~~~ 214 (348)
+...+++.+++|++.....+..++..+.+|||||+.+ ............+..++..+|++++|+|++++... ...
T Consensus 257 ~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~-~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~ 335 (476)
T 3gee_A 257 ERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE-AGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIR 335 (476)
T ss_dssp ----------------CEEEEETTEEEEEEC---------------------CCCSSCSEEEEEEETTTCSSGGGHHHHH
T ss_pred CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc-chhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHH
Confidence 8777899999999998888888899999999999744 22333444456677789999999999999987643 233
Q ss_pred HHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 215 ILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 215 ~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
.+...+ .++|+++|+||+|+........ ..+... +..+++++||++|.|+++|+++|.+.+.
T Consensus 336 ~~l~~l----~~~piIvV~NK~Dl~~~~~~~~--~~l~~~-~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 336 ELKAAH----PAAKFLTVANKLDRAANADALI--RAIADG-TGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHC----TTSEEEEEEECTTSCTTTHHHH--HHHHHH-HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred HHHHhc----CCCCEEEEEECcCCCCccchhH--HHHHhc-CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 333332 3689999999999987654432 223222 2257999999999999999999998876
No 6
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.91 E-value=1.9e-24 Score=179.98 Aligned_cols=160 Identities=26% Similarity=0.347 Sum_probs=115.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
++|+++|.+|+|||||++++.+.........+++|.......+...+..+.+|||||.... ..+...+...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSG--DKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSS--SSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCc--cchHHHHHHHHHHHHHh
Confidence 3899999999999999999999886656777788877777777777789999999996432 12333344556667899
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
+|++++|+|++++......++...+.. .+.|+++|+||+|+....+ ....+. ..+..+++++||++|.|+++++
T Consensus 80 ~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~---~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~ 153 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQADYEVAEYLRR--KGKPVILVATKVDDPKHEL---YLGPLY-GLGFGDPIPTSSEHARGLEELL 153 (161)
T ss_dssp CSEEEEEEESSSCCCHHHHHHHHHHHH--HTCCEEEEEECCCSGGGGG---GCGGGG-GGSSCSCEECBTTTTBSHHHHH
T ss_pred CCEEEEEEECCCcccHhHHHHHHHHHh--cCCCEEEEEECcccccchH---hHHHHH-hCCCCCeEEEecccCCChHHHH
Confidence 999999999998877766667766665 6799999999999976532 112222 2233478999999999999999
Q ss_pred HHHHHhCC
Q 018949 276 DWILTKLP 283 (348)
Q Consensus 276 ~~i~~~l~ 283 (348)
+++.+.++
T Consensus 154 ~~l~~~l~ 161 (161)
T 2dyk_A 154 EAIWERLP 161 (161)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhCc
Confidence 99998763
No 7
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.90 E-value=8.6e-23 Score=175.35 Aligned_cols=166 Identities=30% Similarity=0.380 Sum_probs=120.1
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh----hhHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH----MLDSMMMKN 188 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~----~l~~~~~~~ 188 (348)
...++|+++|.+|||||||+|++++.......+.+++|........ +..+.+|||||+...... .....+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV---NSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE---TTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE---CCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 3456999999999999999999999887667777887776554433 245899999996432111 111112233
Q ss_pred HHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHH---HHHhcCCCCeEEEecC
Q 018949 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLE---WYEKFTDVDEVIPVSA 265 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~---~~~~~~~~~~i~~vSA 265 (348)
+......+|++++|+|++.........+...+.. .+.|+++|+||+|+.+..+...... ......+..+++++||
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 175 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS--LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSS 175 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCT
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEec
Confidence 3344566799999999988776666666666666 5799999999999987654433332 3333334568999999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 018949 266 KYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (348)
++|.|+++++++|.+.+.
T Consensus 176 ~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 176 VTGEGISELLDLISTLLK 193 (195)
T ss_dssp TTCTTHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 999999999999998765
No 8
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.90 E-value=2.7e-24 Score=209.44 Aligned_cols=211 Identities=25% Similarity=0.291 Sum_probs=137.3
Q ss_pred hhhhccccCCCCccCCcCCccccccccCCCCCC-CCCCChhhhhhccccCCCCCCccEEEEEcCCCCChHHHHHHHhCCc
Q 018949 61 WSNQREMDLDDGDEMEFDDASSFLSLSEKPDRN-MASPDDYEIEEFDYASHPNHKSGYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 61 ~~~~~e~~~d~~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
..+.+|+.+||.|+.+..+...+.......... ............. ....+|+++|++|||||||+|+|++..
T Consensus 175 ~~a~iEa~iDf~ed~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~------r~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 175 ILAEIEARIDFEEDLPPLDDEAIISDIENIAAEISQLLATKDKGELL------RTGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HHHHHHHHTTSSSSSCCCCTTTHHHHHHHHHHHHHHHTTTHHHHHHH------HHCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhhh------cCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 455678889998766665554443322211110 0111111111111 023479999999999999999999988
Q ss_pred eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHh
Q 018949 140 LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEG 219 (348)
Q Consensus 140 ~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~ 219 (348)
+..++..+++|++.....+..++.++.+|||||+.+ ..........+.+..++..+|++++|+|++++.......+...
T Consensus 249 ~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~-~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~ 327 (462)
T 3geh_A 249 RAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE-TSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQ 327 (462)
T ss_dssp BSCCSCCTTCCHHHHHHEEEETTEEEEECC---------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHH
T ss_pred cccccCCCCeeEEEEEEEEEECCEEEEEEECCcccc-chhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHh
Confidence 877888999998887767777889999999999743 2233444455667778899999999999998877766666655
Q ss_pred cccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCC
Q 018949 220 VGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (348)
Q Consensus 220 ~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~ 286 (348)
+. ..|+++|+||+|+....... .........+++++||++|.|+++|+++|.+.+....
T Consensus 328 l~----~~piivV~NK~Dl~~~~~~~----~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 328 VK----HRPLILVMNKIDLVEKQLIT----SLEYPENITQIVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp HT----TSCEEEEEECTTSSCGGGST----TCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred cc----CCcEEEEEECCCCCcchhhH----HHHHhccCCcEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 53 37999999999998765432 1111223457999999999999999999999886543
No 9
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=1.2e-23 Score=204.68 Aligned_cols=165 Identities=25% Similarity=0.307 Sum_probs=118.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
++|+++|.||||||||+|+|++.+...+++.+++|++.....+.+++..+.+|||||+.......+...+...+..+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 37999999999999999999999887789999999999888888888999999999975433333445566677788999
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
||++++|+|++.+....+.++..+++. .++|+++|+||+|+..... ......+. ..+..+++++||++|.|+++|+
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~~--~~~p~ilv~NK~D~~~~~~-~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~ 157 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLRK--STVDTILVANKAENLREFE-REVKPELY-SLGFGEPIPVSAEHNINLDTML 157 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHH--HTCCEEEEEESCCSHHHHH-HHTHHHHG-GGSSCSCEECBTTTTBSHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccccH-HHHHHHHH-hcCCCCEEEEeccCCCCHHHHH
Confidence 999999999998887777777777765 5799999999999853211 11102222 2344467999999999999999
Q ss_pred HHHHHhCCC
Q 018949 276 DWILTKLPL 284 (348)
Q Consensus 276 ~~i~~~l~~ 284 (348)
+.|.+.++.
T Consensus 158 ~~i~~~l~~ 166 (439)
T 1mky_A 158 ETIIKKLEE 166 (439)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhccc
Confidence 999887753
No 10
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.90 E-value=8.2e-23 Score=175.94 Aligned_cols=166 Identities=23% Similarity=0.280 Sum_probs=109.5
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhh-hHHHH---HH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM-LDSMM---MK 187 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-l~~~~---~~ 187 (348)
.+..+|+++|.+|+|||||+|+|++.. .....+.+++|......... ..+.+|||||+....... ....+ ..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN---DELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET---TTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC---CcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 355699999999999999999999987 34456677777665444332 369999999975321110 01111 22
Q ss_pred HHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEec
Q 018949 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVS 264 (348)
Q Consensus 188 ~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vS 264 (348)
.+......+|++++|+|++++.......+...+.. .+.|+++|+||+|+....+.......+.. .....+++++|
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFS 175 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEE
Confidence 22233345599999999998776666556666655 68999999999999887655443333332 22345899999
Q ss_pred CCCCCCHHHHHHHHHHhCC
Q 018949 265 AKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~ 283 (348)
|++|.|+++++++|.+.++
T Consensus 176 a~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 176 SETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTTCTTHHHHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHHHhc
Confidence 9999999999999987653
No 11
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.90 E-value=1.9e-24 Score=199.24 Aligned_cols=203 Identities=18% Similarity=0.241 Sum_probs=138.7
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCcee-----eecCCCC----------------------ceEEe------------
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLS-----IVTNKPQ----------------------TTRHR------------ 153 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~-----~~~~~~~----------------------~t~~~------------ 153 (348)
...++|+++|.+|||||||+|+|++.++. .++..|+ +|...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 34569999999999999999999998864 3344443 22210
Q ss_pred ------------EEEEEeCCCeeEEEEeCCCCchhh----hhhhHHHHHHHHHhhccCccEEE-EEecCCCCCchHHH-H
Q 018949 154 ------------ILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIV-VLVDACKAPERIDE-I 215 (348)
Q Consensus 154 ------------~~~~~~~~~~~~~l~DtpG~~~~~----~~~l~~~~~~~~~~~~~~ad~iv-~VvD~~~~~~~~~~-~ 215 (348)
...+.......+.+|||||+.+.. .......+...+..++..++.++ +|+|++.+...... .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 000111123679999999986421 12233344455666777887666 79999877654442 3
Q ss_pred HHHhcccccCCCCEEEEEeccCCCChhh-HHHHHHHHHhcC-----CCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCC
Q 018949 216 LEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYY 289 (348)
Q Consensus 216 ~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~-----~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~ 289 (348)
+...+.. .+.|+++|+||+|+..... .... +.... +..+++++||++|.|+++++++|.+ ..++.+
T Consensus 184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~---~~~~~~ 255 (299)
T 2aka_B 184 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDV---LENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA---ERKFFL 255 (299)
T ss_dssp HHHHHCT--TCSSEEEEEECGGGSCTTCCCHHH---HTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH---HHHHHH
T ss_pred HHHHhCC--CCCeEEEEEEccccCCCCchHHHH---HhCCcCcCCCCcEEEECCChhhccccccHHHHHHH---HHHHHh
Confidence 5555554 6789999999999986433 2222 22211 2347889999999999999999987 334455
Q ss_pred CCcccCCCchH---HHHHHHHHHHHHhhccCCCCceE
Q 018949 290 PKDIVSEHPER---FFVGEIIREKIFMQYRNEVPYAC 323 (348)
Q Consensus 290 ~~~~~~~~~~~---~~~~e~ire~~~~~~~~eip~~~ 323 (348)
+.+..++.+.+ +++.+.++++++..+++++||..
T Consensus 256 ~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~ 292 (299)
T 2aka_B 256 SHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLR 292 (299)
T ss_dssp HCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 55666666666 78999999999999999999854
No 12
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.89 E-value=1.7e-22 Score=179.08 Aligned_cols=170 Identities=18% Similarity=0.191 Sum_probs=112.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+..+|+++|.+|||||||+|+|++..+. +...+++|.......+...+..+.+|||||+.+................+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 105 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL 105 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHh
Confidence 35669999999999999999999999876 56778888877777777777899999999974321111111111122234
Q ss_pred ccCccEEEEEecCCCCCc---hHHHHHHHhcccccCCCCEEEEEeccCCCChhhH----HHHHHHHHhcCC-CCeEEEec
Q 018949 193 GINADCIVVLVDACKAPE---RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI----AKKLEWYEKFTD-VDEVIPVS 264 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~---~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~----~~~~~~~~~~~~-~~~i~~vS 264 (348)
+..+|++|+|+|+++... .....+...+.....+.|+++|+||+|+.....+ ......+....+ ..++++||
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 185 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFS 185 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECC
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 678899999999987643 1122333333332247999999999999764322 122333333332 25899999
Q ss_pred CCCCCCHHHHHHHHHHhCC
Q 018949 265 AKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~ 283 (348)
|++|.|+++++++|.+.+.
T Consensus 186 A~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 186 TLTGVGVEQAKITACELLK 204 (228)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHH
Confidence 9999999999999998764
No 13
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.89 E-value=3e-23 Score=176.08 Aligned_cols=162 Identities=24% Similarity=0.298 Sum_probs=115.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
..+|+++|.+|||||||+|+|.+.....++..+++|.......+..++..+.+|||||+... ..............++.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~-~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA-SDEVERIGIERAWQEIE 82 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCC-SSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccc-hhHHHHHHHHHHHHHHH
Confidence 34899999999999999999999876656788888888777777777788999999997432 12222222333445678
Q ss_pred CccEEEEEecCCCCCchHHHHHHHhcc-cccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 195 NADCIVVLVDACKAPERIDEILEEGVG-DHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
.+|++++|+|+++........+...+. ....++|+++|+||+|+..... .... ....+++++||++|.|+++
T Consensus 83 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~------~~~~-~~~~~~~~~SA~~g~gv~~ 155 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL------GMSE-VNGHALIRLSARTGEGVDV 155 (172)
T ss_dssp TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC------EEEE-ETTEEEEECCTTTCTTHHH
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh------hhhh-ccCCceEEEeCCCCCCHHH
Confidence 999999999998765332222333222 2224799999999999853210 0001 1234789999999999999
Q ss_pred HHHHHHHhCCC
Q 018949 274 IRDWILTKLPL 284 (348)
Q Consensus 274 L~~~i~~~l~~ 284 (348)
++++|.+.+..
T Consensus 156 l~~~l~~~~~~ 166 (172)
T 2gj8_A 156 LRNHLKQSMGF 166 (172)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHhhh
Confidence 99999988753
No 14
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.89 E-value=4.6e-23 Score=186.37 Aligned_cols=158 Identities=24% Similarity=0.331 Sum_probs=116.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh----hhHHHHHHHHHhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH----MLDSMMMKNVRSA 192 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~----~l~~~~~~~~~~~ 192 (348)
+|+++|.+|||||||+|+|+|.+.. +...+++|.+.....+..++..+.+|||||+...... .....+...+. .
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~-v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~-~ 80 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQR-VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV-I 80 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEE-EEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC-ccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH-h
Confidence 7999999999999999999998754 6788999999888888888889999999997543221 33332322221 1
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
...+|++|+|+|+++.. ....+...+.. .+.|+++|+||+|+............+....+ .+++++||++|.|++
T Consensus 81 ~~~~d~vi~VvDas~~~--~~~~l~~~l~~--~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~vi~~SA~~g~gi~ 155 (256)
T 3iby_A 81 DLEYDCIINVIDACHLE--RHLYLTSQLFE--LGKPVVVALNMMDIAEHRGISIDTEKLESLLG-CSVIPIQAHKNIGIP 155 (256)
T ss_dssp HSCCSEEEEEEEGGGHH--HHHHHHHHHTT--SCSCEEEEEECHHHHHHTTCEECHHHHHHHHC-SCEEECBGGGTBSHH
T ss_pred hCCCCEEEEEeeCCCch--hHHHHHHHHHH--cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC-CCEEEEECCCCCCHH
Confidence 27899999999998732 22334444455 57999999999998654322111222333334 489999999999999
Q ss_pred HHHHHHHHh
Q 018949 273 DIRDWILTK 281 (348)
Q Consensus 273 eL~~~i~~~ 281 (348)
+|+++|.+.
T Consensus 156 el~~~i~~~ 164 (256)
T 3iby_A 156 ALQQSLLHC 164 (256)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 999999988
No 15
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.89 E-value=5.1e-23 Score=181.38 Aligned_cols=163 Identities=20% Similarity=0.198 Sum_probs=109.9
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
+.+..||+++|.+|||||||+++++...+... .++.+..............+.+.+|||+| ++.+..+..
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaG--qe~~~~l~~------- 80 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG--LERFRSLIP------- 80 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSC--TTTCGGGHH-------
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCC--chhhhhHHH-------
Confidence 34566999999999999999999998776421 12222222222333445567899999999 556665543
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCC
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
.+++.++++++|+|.++.. .....|+.........+.|++||+||+|+...+.+ .+....+....+ .++++|||++
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~-~~~~e~SAkt 159 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN-VMFIETSAKA 159 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEEEBTTT
T ss_pred HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhC-CeeEEEeCCC
Confidence 4478999999999998644 45555655554444478999999999999754322 112233333334 3799999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.||+++|+.|.+.+..
T Consensus 160 g~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 160 GYNVKQLFRRVAAALPG 176 (216)
T ss_dssp TBSHHHHHHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999998864
No 16
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.89 E-value=9.2e-23 Score=172.14 Aligned_cols=161 Identities=22% Similarity=0.226 Sum_probs=102.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||+|+|.+..+....+.++++.......++.....+.+|||||.....+..+ ...++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-------~~~~~ 75 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWS-------QESCL 75 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHH-------HHHTT
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhh-------HHhhc
Confidence 34589999999999999999999988776666667665544444444456899999999533112222 23457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
..+|++++|+|+++.. .....++..+.... ..+.|+++|+||+|+.....+ ......+....+ .+++++||++|.
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~ 154 (175)
T 2nzj_A 76 QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFD-CKFIETSATLQH 154 (175)
T ss_dssp TSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHT-SEEEECBTTTTB
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcC-CeEEEEecCCCC
Confidence 8899999999998643 23333333332211 247999999999999754322 111122222223 489999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++++++|.+.+
T Consensus 155 gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 155 NVAELFEGVVRQL 167 (175)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 17
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=5.4e-22 Score=170.00 Aligned_cols=163 Identities=16% Similarity=0.190 Sum_probs=110.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||+|++.+..+....++.+.+. ..+..++..+.+|||||.. .+..+ ...++
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~~ 81 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV----EEIVINNTRFLMWDIGGQE--SLRSS-------WNTYY 81 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC----EEEEETTEEEEEEECCC------CGG-------GHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce----EEEEECCEEEEEEECCCCH--hHHHH-------HHHHh
Confidence 45699999999999999999999877654444444332 2233467899999999953 33333 23446
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~~ 267 (348)
..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+.......+....+... ....+++++||++
T Consensus 82 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 161 (187)
T 1zj6_A 82 TNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALT 161 (187)
T ss_dssp TTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCC
Confidence 8999999999998764 44445555554431 2579999999999998643333333333221 1224789999999
Q ss_pred CCCHHHHHHHHHHhCCCCCCCC
Q 018949 268 GHGVEDIRDWILTKLPLGPAYY 289 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~~~~~~ 289 (348)
|.|+++++++|.+.+...++..
T Consensus 162 g~gi~~l~~~l~~~~~~~~~~~ 183 (187)
T 1zj6_A 162 GEGLCQGLEWMMSRLKIRLEHH 183 (187)
T ss_dssp TBTHHHHHHHHHHHHCC-----
T ss_pred CcCHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999887655433
No 18
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.89 E-value=2.6e-22 Score=174.15 Aligned_cols=156 Identities=21% Similarity=0.211 Sum_probs=105.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|++|||||||++++.+.++....++.+.+ ...+..++..+.+|||||. ..+..+ +..++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~----~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~~ 90 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELTIAGMTFTTFDLGGH--IQARRV-------WKNYL 90 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCS----CEEEEETTEEEEEEEECC------CCG-------GGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCce----eEEEEECCEEEEEEECCCc--HhhHHH-------HHHHH
Confidence 5568999999999999999999988765443443333 2344556689999999994 333322 33457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHHHHHHHHHhc---------------C
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---------------T 255 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---------------~ 255 (348)
..+|++++|+|+++.. .....++...+.. ...+.|+++|+||+|+......++....+... .
T Consensus 91 ~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
T 1f6b_A 91 PAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNA 170 (198)
T ss_dssp GGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCS
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccC
Confidence 8999999999998754 3344455544432 12679999999999997532233333333211 1
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 256 DVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 256 ~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
...++++|||++|.|+++++++|.+.+
T Consensus 171 ~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 171 RPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 335799999999999999999998765
No 19
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.88 E-value=1.4e-22 Score=183.51 Aligned_cols=163 Identities=23% Similarity=0.270 Sum_probs=117.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||+|+|++.... +...+++|.......+...+..+.+|||||+...........+...+.. .
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~-~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL-K 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH-H
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh-h
Confidence 4558999999999999999999998876 6788899998888888888899999999997543322222222222211 1
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
..+|++++|+|+++.... .. +...+.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|+++
T Consensus 82 ~~~d~ii~V~D~t~~~~~-~~-~~~~l~~--~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg-~~vi~~SA~~g~gi~e 156 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQS-LY-LLLEILE--MEKKVILAMTAIDEAKKTGMKIDRYELQKHLG-IPVVFTSSVTGEGLEE 156 (258)
T ss_dssp SCCSEEEEEEETTSCHHH-HH-HHHHHHT--TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHC-SCEEECCTTTCTTHHH
T ss_pred cCCCEEEEEeCCCchhhH-HH-HHHHHHh--cCCCEEEEEECcCCCCccchHHHHHHHHHHcC-CCEEEEEeeCCcCHHH
Confidence 689999999999874332 22 3333344 57999999999998643221111222333333 4899999999999999
Q ss_pred HHHHHHHhCC
Q 018949 274 IRDWILTKLP 283 (348)
Q Consensus 274 L~~~i~~~l~ 283 (348)
|++++.+.+.
T Consensus 157 l~~~i~~~~~ 166 (258)
T 3a1s_A 157 LKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 20
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.88 E-value=6.6e-23 Score=172.50 Aligned_cols=162 Identities=28% Similarity=0.352 Sum_probs=104.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
..+|+++|++|||||||+|++.+..+. +...+++|.......+..++..+.+|||||+...........+...+.. ..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~-~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII-NE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSS-CC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHH-HH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCee-ccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHh-cC
Confidence 358999999999999999999987654 4556677766666666666789999999996442211111111111111 13
Q ss_pred CccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHH
Q 018949 195 NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL 274 (348)
.+|++++|+|+++. .....++ ..+.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|++++
T Consensus 81 ~~~~~i~v~D~~~~-~~~~~~~-~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~SA~~~~~v~~l 155 (165)
T 2wji_A 81 KPDLVVNIVDATAL-ERNLYLT-LQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILG-VKVVPLSAAKKMGIEEL 155 (165)
T ss_dssp CCSEEEEEEETTCH-HHHHHHH-HHHHH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECBGGGTBSHHHH
T ss_pred CCCEEEEEecCCch-hHhHHHH-HHHHh--cCCCEEEEEEchHhccccChhhHHHHHHHHhC-CCEEEEEcCCCCCHHHH
Confidence 79999999999763 2222233 33333 57999999999998543211101122222223 47999999999999999
Q ss_pred HHHHHHhCC
Q 018949 275 RDWILTKLP 283 (348)
Q Consensus 275 ~~~i~~~l~ 283 (348)
+++|.+.+.
T Consensus 156 ~~~l~~~~~ 164 (165)
T 2wji_A 156 KKAISIAVK 164 (165)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 999988763
No 21
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=2.4e-22 Score=173.16 Aligned_cols=163 Identities=19% Similarity=0.238 Sum_probs=112.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCcee-eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|+|||||+|++++..+. ...++.+.+.......+......+.+|||||. ..+..+ ...+
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 92 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQ--ERFHSL-------APMY 92 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCS--GGGGGG-------THHH
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCc--hhhHhh-------hHHh
Confidence 4558999999999999999999987753 23455555555554455556788999999994 333333 2244
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|+++.. .....++.........+.|+++|+||+|+...... .+....+....+ .+++++||++|.
T Consensus 93 ~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 171 (192)
T 2fg5_A 93 YRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIG-AIVVETSAKNAI 171 (192)
T ss_dssp HTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTT-CEEEECBTTTTB
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEeCCCCc
Confidence 68999999999998754 22223333222221257999999999999743221 122333333344 489999999999
Q ss_pred CHHHHHHHHHHhCCCCC
Q 018949 270 GVEDIRDWILTKLPLGP 286 (348)
Q Consensus 270 gi~eL~~~i~~~l~~~~ 286 (348)
|+++++++|.+.+...+
T Consensus 172 gi~~l~~~l~~~i~~~~ 188 (192)
T 2fg5_A 172 NIEELFQGISRQIPPLD 188 (192)
T ss_dssp SHHHHHHHHHHTCC---
T ss_pred CHHHHHHHHHHHHHhhC
Confidence 99999999999886543
No 22
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.88 E-value=1.3e-22 Score=169.87 Aligned_cols=156 Identities=24% Similarity=0.273 Sum_probs=95.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
.+|+++|.+|||||||+|++.+.......+.++++... ...+......+.+|||||. ..+..+ ...++..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~--~~~~~~-------~~~~~~~ 72 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR-SIVVDGEEASLMVYDIWEQ--DGGRWL-------PGHCMAM 72 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEEE-EEEETTEEEEEEEEECC------------------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE-EEEECCEEEEEEEEECCCC--ccchhh-------hhhhhhh
Confidence 48999999999999999999998876666777776643 3344555678999999994 333322 3344789
Q ss_pred ccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 196 ADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 196 ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
+|++++|+|.++.. .....++....... ..+.|+++|+||+|+.+...+ ......+....+ .+++++||++|.|+
T Consensus 73 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 151 (166)
T 3q72_A 73 GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFD-CKFIETSAALHHNV 151 (166)
T ss_dssp CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTT-CEEEECBGGGTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhC-CcEEEeccCCCCCH
Confidence 99999999998654 33333444333221 257999999999999754322 122233333344 48999999999999
Q ss_pred HHHHHHHHHhC
Q 018949 272 EDIRDWILTKL 282 (348)
Q Consensus 272 ~eL~~~i~~~l 282 (348)
++++++|.+.+
T Consensus 152 ~~l~~~l~~~~ 162 (166)
T 3q72_A 152 QALFEGVVRQI 162 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 23
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.88 E-value=2.8e-22 Score=167.64 Aligned_cols=158 Identities=17% Similarity=0.162 Sum_probs=105.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|++.+..+. .....++....... +......+.+|||||.. .+..+. ..
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~--~~~~~~-------~~ 70 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTE--QFTAMR-------DL 70 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSC--SSTTHH-------HH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCEEEEEEEEECCChH--HHHHHH-------HH
Confidence 3458999999999999999999987654 23333433333333 33445689999999953 333332 23
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+...... .+....+....+..+++++||++
T Consensus 71 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (167)
T 1c1y_A 71 YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKS 150 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCC
Confidence 356799999999998643 22233333222211 257999999999999754321 12223333334345899999999
Q ss_pred CCCHHHHHHHHHHhC
Q 018949 268 GHGVEDIRDWILTKL 282 (348)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (348)
|.|+++++++|.+.+
T Consensus 151 ~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 151 KINVNEIFYDLVRQI 165 (167)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
No 24
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.88 E-value=1.3e-21 Score=167.06 Aligned_cols=158 Identities=23% Similarity=0.327 Sum_probs=110.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||++++.+..+....++.+.+. ..+..++..+.+|||||. ..+.. .+..++
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~----~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~~~ 81 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI----KSVQSQGFKLNVWDIGGQ--RKIRP-------YWRSYF 81 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEE----EEEEETTEEEEEEECSSC--GGGHH-------HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEE----EEEEECCEEEEEEECCCC--HHHHH-------HHHHHh
Confidence 55699999999999999999999987655555555332 223445789999999995 33222 234557
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~ 267 (348)
..+|++++|+|+++.. .....++...+... ..+.|+++|+||+|+.......+....+.. .....++++|||++
T Consensus 82 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (181)
T 1fzq_A 82 ENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALT 161 (181)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred CCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCC
Confidence 8999999999998754 33344555554432 267999999999999865433333222221 11234789999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|+++++++|.+.+..
T Consensus 162 g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 162 GEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CTTHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987753
No 25
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=1.2e-23 Score=190.28 Aligned_cols=184 Identities=15% Similarity=0.131 Sum_probs=124.0
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCC-ceEEeEEEEEeCCCeeEEEEeCCCCchhhhh--hhHHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQ-TTRHRILGICSGPEYQMILYDTPGIIEKKIH--MLDSMMMKNV 189 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--~l~~~~~~~~ 189 (348)
.+..+|+|+|++|||||||+|+|++.........+. +|.......+..++..+.+|||||+.+.... .....+...+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 355699999999999999999999988554444444 6777777777778899999999997653211 1112234445
Q ss_pred HhhccCccEEEEEecCCCCCchHHHHHHHhcccc-c--CCCCEEEEEe-ccCCCChhhHHHH--------HH-HHHhcCC
Q 018949 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDH-K--DKLPILLVLN-KKDLIKPGEIAKK--------LE-WYEKFTD 256 (348)
Q Consensus 190 ~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~-~--~~~p~ivv~N-K~Dl~~~~~~~~~--------~~-~~~~~~~ 256 (348)
..+++.+|++|+|+|++. .......+...+... + ...|.++|+| |+|+.... +... .. .+.....
T Consensus 100 ~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~ 177 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAACGG 177 (260)
T ss_dssp HHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTT
T ss_pred HhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHHhCC
Confidence 567899999999999985 544444444443331 1 1467777777 99998532 2221 11 2222221
Q ss_pred ----CCeEEEecCCCCCCHHHHHHHHHHhCCCCC-CCCCCcccCCCch
Q 018949 257 ----VDEVIPVSAKYGHGVEDIRDWILTKLPLGP-AYYPKDIVSEHPE 299 (348)
Q Consensus 257 ----~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~-~~~~~~~~~~~~~ 299 (348)
+.+ +++||++|.|+++++++|.+.+...+ +.|+.+..++.+.
T Consensus 178 ~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 224 (260)
T 2xtp_A 178 RICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQR 224 (260)
T ss_dssp CEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC--
T ss_pred eEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHH
Confidence 222 88999999999999999999887666 6777665555554
No 26
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.88 E-value=2.5e-22 Score=168.29 Aligned_cols=161 Identities=20% Similarity=0.187 Sum_probs=109.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|+|||||+|++++..+... .++.+.+.......+......+.+|||||. ..+..+ ...+
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~-------~~~~ 75 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ--ERYHSL-------APMY 75 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------HHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc--HHhhhh-------hHHh
Confidence 345899999999999999999998765422 233333333333334445678999999995 333333 3344
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|++++. .....++.........+.|+++|+||+|+...... .+....+....+ .+++++||++|.
T Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~ 154 (170)
T 1r2q_A 76 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNS-LLFMETSAKTSM 154 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECCTTTCT
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 78999999999998753 33334444443332367899999999998643221 111222222333 489999999999
Q ss_pred CHHHHHHHHHHhCCC
Q 018949 270 GVEDIRDWILTKLPL 284 (348)
Q Consensus 270 gi~eL~~~i~~~l~~ 284 (348)
|+++++++|.+.+..
T Consensus 155 gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 155 NVNEIFMAIAKKLPK 169 (170)
T ss_dssp THHHHHHHHHHTSCC
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999988753
No 27
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.88 E-value=5.1e-22 Score=171.34 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=109.2
Q ss_pred CCCCccEEEEEcCCCCChHHHHHHHhCCceeee--cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 111 ~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
+.....+|+++|.+|||||||+++|++..+..+ .++.+ .....+...+..+.+|||||.. .+..+
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~--~~~~~------- 79 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG----YNVETFEKGRVAFTVFDMGGAK--KFRGL------- 79 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS----EEEEEEEETTEEEEEEEECCSG--GGGGG-------
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc----eeEEEEEeCCEEEEEEECCCCH--hHHHH-------
Confidence 344566999999999999999999999887643 23333 2233346778899999999953 33332
Q ss_pred HHhhccCccEEEEEecCCCCC--chHHHHHHHhccccc--------CCCCEEEEEeccCCCChhhHHHHHHHHH---h-c
Q 018949 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK--------DKLPILLVLNKKDLIKPGEIAKKLEWYE---K-F 254 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~--------~~~p~ivv~NK~Dl~~~~~~~~~~~~~~---~-~ 254 (348)
...++..+|++|+|+|+++.. .....++...+.... .+.|+++|+||+|+.......+....+. . .
T Consensus 80 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 159 (199)
T 4bas_A 80 WETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMG 159 (199)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHT
T ss_pred HHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhcc
Confidence 235578999999999998764 344455555443311 2799999999999987633322222221 1 2
Q ss_pred CCCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 255 TDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 255 ~~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
....++++|||++|.|+++++++|.+.+.
T Consensus 160 ~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 160 DHPFVIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp TSCEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred CCeeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 23358999999999999999999988764
No 28
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.88 E-value=4.4e-22 Score=166.99 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=110.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|+|||||+|++.+..+.. ..++.+.+.......+......+.+|||||+. .+..+ ...+
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~--~~~~~-------~~~~ 75 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE--RFRAL-------APMY 75 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG--GGGGG-------THHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch--hhhcc-------cHhh
Confidence 44589999999999999999999877532 23444444444444444556789999999953 33332 2334
Q ss_pred ccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|++++.. ....++...........|+++|+||+|+....+. .+....+....+ .+++++||++|.
T Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 154 (170)
T 1z0j_A 76 YRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIH-AIFVETSAKNAI 154 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTTTB
T ss_pred CcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcC-CEEEEEeCCCCc
Confidence 689999999999987542 2222332222222367899999999999754322 222333333334 489999999999
Q ss_pred CHHHHHHHHHHhCCC
Q 018949 270 GVEDIRDWILTKLPL 284 (348)
Q Consensus 270 gi~eL~~~i~~~l~~ 284 (348)
|+++++++|.+.+..
T Consensus 155 ~i~~l~~~i~~~i~~ 169 (170)
T 1z0j_A 155 NINELFIEISRRIPS 169 (170)
T ss_dssp SHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999988753
No 29
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.88 E-value=6.1e-22 Score=168.12 Aligned_cols=161 Identities=19% Similarity=0.233 Sum_probs=108.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|+|||||+|++++..+.... ++.+.+.......+......+.+|||||. ..+..+ ...+
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 81 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ--ERYHSL-------APMY 81 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCS--GGGGGG-------THHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCC--hhhhhh-------hHHH
Confidence 4568999999999999999999987754221 22233333333333444578999999994 333333 2334
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|+++.. .....++.........+.|+++|+||+|+.....+ .+....+....+ .+++++||++|.
T Consensus 82 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~ 160 (181)
T 2efe_B 82 YRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENG-LFFMETSAKTAT 160 (181)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CEEEECCSSSCT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcC-CEEEEEECCCCC
Confidence 68899999999998654 22333333333322257899999999999754321 122223333333 389999999999
Q ss_pred CHHHHHHHHHHhCCC
Q 018949 270 GVEDIRDWILTKLPL 284 (348)
Q Consensus 270 gi~eL~~~i~~~l~~ 284 (348)
|+++++++|.+.+..
T Consensus 161 gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 161 NVKEIFYEIARRLPR 175 (181)
T ss_dssp THHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998865
No 30
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=5.6e-23 Score=199.71 Aligned_cols=162 Identities=28% Similarity=0.363 Sum_probs=114.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
++|+++|.+|||||||+|+|++.....+.+++++|++.....+.+.+..+.+|||||+.... ..+...+...+..++..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~-~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD-EPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC----------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcc-hhHHHHHHHHHHHHHHh
Confidence 48999999999999999999999888889999999999888888888999999999974322 22445566667778899
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
||++|+|+|++.+....+.++...++. .++|+++|+||+|+..... .. ..+. ..+..+++++||++|.|+++|+
T Consensus 83 ad~il~vvD~~~~~~~~d~~~~~~l~~--~~~pvilv~NK~D~~~~~~--~~-~~~~-~lg~~~~~~iSA~~g~gv~~L~ 156 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA--NI-YDFY-SLGFGEPYPISGTHGLGLGDLL 156 (436)
T ss_dssp CSEEEEEEETTTCSCHHHHHHHHHHTT--CCSCEEEEEECCCC-------CC-CSSG-GGSSCCCEECBTTTTBTHHHHH
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCccchh--hH-HHHH-HcCCCCeEEEeCcCCCChHHHH
Confidence 999999999999888777888887776 7899999999999875321 00 1111 1233468999999999999999
Q ss_pred HHHHHhCCC
Q 018949 276 DWILTKLPL 284 (348)
Q Consensus 276 ~~i~~~l~~ 284 (348)
+++.+.++.
T Consensus 157 ~~i~~~l~~ 165 (436)
T 2hjg_A 157 DAVAEHFKN 165 (436)
T ss_dssp HHHHHTGGG
T ss_pred HHHHHhcCc
Confidence 999998864
No 31
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.88 E-value=8.2e-22 Score=169.81 Aligned_cols=156 Identities=21% Similarity=0.196 Sum_probs=108.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|++|||||||++++.+..+....++.+.+ ...+..++..+.+|||||... +..+ ...++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~Dt~G~~~--~~~~-------~~~~~ 88 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT----SEELAIGNIKFTTFDLGGHIQ--ARRL-------WKDYF 88 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE----EEEEEETTEEEEEEECCCSGG--GTTS-------GGGGC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC----eEEEEECCEEEEEEECCCCHH--HHHH-------HHHHH
Confidence 4458999999999999999999987765433333332 334455678999999999533 3222 23457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc----------CCCCeE
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF----------TDVDEV 260 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~----------~~~~~i 260 (348)
..+|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+......++....+... ....++
T Consensus 89 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T 1m2o_B 89 PEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEV 168 (190)
T ss_dssp TTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred hcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEE
Confidence 8999999999998764 33444444444321 2679999999999997633333333332221 133479
Q ss_pred EEecCCCCCCHHHHHHHHHHhC
Q 018949 261 IPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l 282 (348)
++|||++|.|+++++++|.+.+
T Consensus 169 ~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 169 FMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp EECBTTTTBSHHHHHHHHHTTC
T ss_pred EEeECCcCCCHHHHHHHHHhhC
Confidence 9999999999999999998653
No 32
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.88 E-value=8.9e-22 Score=167.89 Aligned_cols=156 Identities=16% Similarity=0.201 Sum_probs=109.9
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+..+|+++|.+|||||||+|+|.+..+....++.+.+.. .+..++..+.+|||||.. .+..+ ...+
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~ 85 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQE--SLRSS-------WNTY 85 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE----EEEETTEEEEEEEESSSG--GGTCG-------GGGG
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE----EEEECCEEEEEEECCCCH--hHHHH-------HHHH
Confidence 4556999999999999999999999887555566654432 233466899999999953 33322 2355
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAK 266 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~ 266 (348)
+..+|++++|+|+++.. .....++...+... ..+.|+++|+||+|+.......+....+.. .....+++++||+
T Consensus 86 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 165 (181)
T 2h17_A 86 YTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCAL 165 (181)
T ss_dssp GTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCC
Confidence 78999999999998763 44444555554431 267999999999999764322222222211 1122378999999
Q ss_pred CCCCHHHHHHHHHHh
Q 018949 267 YGHGVEDIRDWILTK 281 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~ 281 (348)
+|.|+++++++|.+.
T Consensus 166 ~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 166 TGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTBTHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHhh
Confidence 999999999999864
No 33
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.88 E-value=9e-23 Score=186.31 Aligned_cols=165 Identities=26% Similarity=0.299 Sum_probs=119.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh----hhhHHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI----HMLDSMMMKNV 189 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~----~~l~~~~~~~~ 189 (348)
+..+|+++|.+|||||||+|+|++... .++..+++|.......+...+..+.+|||||+.+... ..+.......
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~- 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH- 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHH-
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHH-
Confidence 345899999999999999999999885 4788999999988888888888999999999754321 1222222222
Q ss_pred HhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 190 ~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
......+|++|+|+|+++.. . ...+...+.. .++|+++|+||+|+............+....+ .+++++||++|.
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~-~-~~~~~~~l~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg-~~~i~~SA~~g~ 154 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLE-R-NLYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIEIDALSARLG-CPVIPLVSTRGR 154 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHH-H-HHHHHHHHHH--HTCCEEEEEECHHHHHHTTEEECHHHHHHHHT-SCEEECCCGGGH
T ss_pred HHhhcCCCEEEEEecCCChH-H-HHHHHHHHHh--cCCCEEEEEECccchhhhhHHHHHHHHHHhcC-CCEEEEEcCCCC
Confidence 22247999999999998632 2 2223333444 47999999999998643321111222333333 489999999999
Q ss_pred CHHHHHHHHHHhCCCC
Q 018949 270 GVEDIRDWILTKLPLG 285 (348)
Q Consensus 270 gi~eL~~~i~~~l~~~ 285 (348)
|+++|+++|.+.++..
T Consensus 155 gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 155 GIEALKLAIDRYKANE 170 (274)
T ss_dssp HHHHHHHHHHTCCCCC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999988754
No 34
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.88 E-value=7.5e-22 Score=164.88 Aligned_cols=155 Identities=18% Similarity=0.168 Sum_probs=107.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|.+|||||||++++.+..+... .| |.......+..++..+.+|||||.. .+.. ....++..+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~-------~~~~~~~~~ 68 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGGQD--KIRP-------LWRHYFQNT 68 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCC--CC--CSSCCEEEEECSSCEEEEEECCCCG--GGHH-------HHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcc--cC--cCceeEEEEEECCEEEEEEEcCCCh--hhHH-------HHHHHhccC
Confidence 799999999999999999988765422 22 2223334456677899999999953 3222 234458999
Q ss_pred cEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCCCCCC
Q 018949 197 DCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKYGHG 270 (348)
Q Consensus 197 d~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~~g~g 270 (348)
|++++|+|++++. .....++...+.. ...+.|+++|+||+|+.......+........ ....+++++||++|.|
T Consensus 69 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 148 (164)
T 1r8s_A 69 QGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDG 148 (164)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcC
Confidence 9999999998763 3344455544432 12579999999999997653333332222211 1224789999999999
Q ss_pred HHHHHHHHHHhCCC
Q 018949 271 VEDIRDWILTKLPL 284 (348)
Q Consensus 271 i~eL~~~i~~~l~~ 284 (348)
+++++++|.+.+..
T Consensus 149 i~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 149 LYEGLDWLSNQLRN 162 (164)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988753
No 35
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=1.1e-22 Score=197.54 Aligned_cols=169 Identities=21% Similarity=0.249 Sum_probs=120.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh--hhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~l~~~~~~~~~~ 191 (348)
...+|+++|++|||||||+|++++..+..+++.+++|++.....+..++..+.+|||||+..... ..++.........
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 45699999999999999999999998877889999999988877788888999999999633111 1122222223345
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh--HHHHHHHHHhc---CCCCeEEEecCC
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEKF---TDVDEVIPVSAK 266 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~---~~~~~i~~vSA~ 266 (348)
+++.+|++++|+|++++...++..+...+.. .++|+++|+||+|+..... ..+....+... ....+++++||+
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~ 331 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSAL 331 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTT
T ss_pred HHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecc
Confidence 6788999999999999887766666666655 6899999999999986432 22233333322 234589999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 018949 267 YGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (348)
+|.|++++++.+.+.+..
T Consensus 332 tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 332 TKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp TCTTGGGHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999887643
No 36
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.87 E-value=1e-22 Score=189.13 Aligned_cols=204 Identities=20% Similarity=0.241 Sum_probs=133.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCce-----eeecCCC---CceEEe--------------------------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKL-----SIVTNKP---QTTRHR-------------------------------- 153 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~-----~~~~~~~---~~t~~~-------------------------------- 153 (348)
..++|+|+|.+|+|||||+|+|+|.++ ..++..| .+++..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 455899999999999999999999886 3344444 222210
Q ss_pred ------E-------------EEEEeCCCeeEEEEeCCCCchhh----hhhhHHHHHHHHHhhccCccEEEEEecCC-CCC
Q 018949 154 ------I-------------LGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIVVLVDAC-KAP 209 (348)
Q Consensus 154 ------~-------------~~~~~~~~~~~~l~DtpG~~~~~----~~~l~~~~~~~~~~~~~~ad~iv~VvD~~-~~~ 209 (348)
. ..+....+..+.+|||||+.+.. ...+...+...+..++..+|++++|+|++ .+.
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 0 00123345689999999985422 12344556677788899999999999974 443
Q ss_pred c-hHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCC--CeEEEe---cCCC---CCCHHHHHHHHHH
Q 018949 210 E-RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV--DEVIPV---SAKY---GHGVEDIRDWILT 280 (348)
Q Consensus 210 ~-~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~--~~i~~v---SA~~---g~gi~eL~~~i~~ 280 (348)
. .....+...+.. .+.|+++|+||+|+...... ....+...... .+++++ ||.+ +.|+.++++.+.+
T Consensus 183 ~~~~~~~i~~~~~~--~~~~~i~v~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~ 258 (315)
T 1jwy_B 183 ANSDALQLAKEVDP--EGKRTIGVITKLDLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEIL 258 (315)
T ss_dssp TTCSHHHHHHHHCS--SCSSEEEEEECTTSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHhCC--CCCcEEEEEcCcccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHH
Confidence 3 222345555555 67999999999999864431 11222221111 234444 5555 7899999999999
Q ss_pred hCCCCCCCCCCcccCCCchHHHHHHHHHHHHHhhccCCCCceEE
Q 018949 281 KLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQ 324 (348)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~~eip~~~~ 324 (348)
.++..++ |+ +..++.+.++... .+|++++..+++++||...
T Consensus 259 ~~~~~~~-~~-~~~~~~~~~~l~~-~lre~l~~~~~~elP~~~~ 299 (315)
T 1jwy_B 259 YFKNHPI-YK-SIANRSGTAYLSK-TLNKLLMFHIRDTLPDLKV 299 (315)
T ss_dssp HHHTCTT-GG-GSGGGCSHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCc-cc-cchhccCHHHHHH-HHHHHHHHHHHHHhHHHHH
Confidence 9887776 44 4555666666555 5999999999999998543
No 37
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=3.5e-22 Score=167.38 Aligned_cols=159 Identities=21% Similarity=0.188 Sum_probs=106.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
..+|+++|.+|+|||||+|++++..+.. ..+..+.+.......+......+.+|||||. ..+..+ ...++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~--~~~~~~-------~~~~~ 73 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ--ERFASL-------APXYY 73 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------HHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCC--hhhhhh-------hhhhh
Confidence 3589999999999999999999877542 1233333333333334444568999999994 333333 33457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCCh---hhH-HHHHHHHHhcCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKP---GEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~---~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
..+|++++|+|++++. .....++.........+.|+++|+||+|+... ..+ ......+....+ .+++++||++
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 152 (170)
T 1ek0_A 74 RNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-LLFFETSAKT 152 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-CEEEECCTTT
T ss_pred ccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcC-CEEEEEeCCC
Confidence 8999999999998753 23333333333332367999999999998643 111 112222222223 3899999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 018949 268 GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (348)
|.|+++++++|.+.+.
T Consensus 153 ~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 153 GENVNDVFLGIGEKIP 168 (170)
T ss_dssp CTTHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998774
No 38
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.87 E-value=1.1e-21 Score=164.94 Aligned_cols=157 Identities=16% Similarity=0.223 Sum_probs=109.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|+|||||+|++.+..+....++.+ .....+..++..+.+|||||.. .+..+ +..++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~--~~~~~-------~~~~~ 72 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIG----FNVETVTYKNLKFQVWDLGGLT--SIRPY-------WRCYY 72 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSS----EEEEEEEETTEEEEEEEECCCG--GGGGG-------GGGGC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCc----cceEEEEECCEEEEEEECCCCh--hhhHH-------HHHHh
Confidence 45689999999999999999998877642222222 2233445567899999999953 33322 33557
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~ 267 (348)
..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+....+.. .....+++++||++
T Consensus 73 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (171)
T 1upt_A 73 SNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATK 152 (171)
T ss_dssp TTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCC
Confidence 8999999999998764 44445555554432 257999999999999875333333333321 11223799999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 018949 268 GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (348)
|.|+++++++|.+.+.
T Consensus 153 ~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 153 GTGLDEAMEWLVETLK 168 (171)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999988764
No 39
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.87 E-value=5.1e-22 Score=169.20 Aligned_cols=162 Identities=19% Similarity=0.150 Sum_probs=109.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||++++.+..+. .....++...... .+......+.+|||||.. .+..+ ...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~ 72 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE--DYDRL-------RPL 72 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSG--GGTTT-------GGG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCCH--hHHHH-------HHH
Confidence 4568999999999999999999977653 2233333332222 233445678899999953 33322 234
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-------------HHHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~~~~~~~~~~ 256 (348)
++..+|++++|+|++++. ......+...+.....+.|+++|+||+|+....... .....+....+
T Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (186)
T 1mh1_A 73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 152 (186)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcC
Confidence 578999999999998754 222223333333322489999999999997543211 11222333345
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhCCCCC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKLPLGP 286 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~ 286 (348)
..+++++||++|.|+++++++|.+.+...+
T Consensus 153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 153 AVKYLECSALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred CcEEEEecCCCccCHHHHHHHHHHHHhccc
Confidence 458999999999999999999999886644
No 40
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.87 E-value=1e-21 Score=166.12 Aligned_cols=160 Identities=16% Similarity=0.111 Sum_probs=105.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|+|||||+|++++..+.. ...+..+.......+..+ ...+.+|||||.. .+.. ....
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~-------~~~~ 75 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE--RFRS-------LRTP 75 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEEEEEEEEEETTEEEEEEEEECCCCG--GGHH-------HHGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeEEEEEEEECCEEEEEEEEeCCCch--hhhh-------hHHH
Confidence 44589999999999999999999876542 222333333333333333 4689999999943 3222 2345
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccc----cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA 265 (348)
++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+.......+....+.......+++++||
T Consensus 76 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 155 (177)
T 1wms_A 76 FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSA 155 (177)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCT
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeC
Confidence 678999999999998754 22223332222111 157899999999999743222222333333233458999999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 018949 266 KYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (348)
++|.|+++++++|.+.+.
T Consensus 156 ~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 156 KDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988764
No 41
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.87 E-value=8.8e-23 Score=199.69 Aligned_cols=161 Identities=24% Similarity=0.320 Sum_probs=122.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
.+|+++|.||||||||+|+|++.++..+++.++||++.....+..++..+.+|||||+...............+..++..
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~ 323 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 323 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhc
Confidence 48999999999999999999998877789999999998888888889999999999975122222222223345566789
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
+|++|+|+|++++.......+.+.+ .++|+++|+||+|+.......+... +. ....+++++||++|.|+++|+
T Consensus 324 aD~vl~VvD~s~~~s~~~~~il~~l----~~~piivV~NK~DL~~~~~~~~~~~-~~--~~~~~~i~iSAktg~Gi~eL~ 396 (482)
T 1xzp_A 324 ADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEKINEEEIKN-KL--GTDRHMVKISALKGEGLEKLE 396 (482)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECSSCCCCCHHHHHH-HH--TCSTTEEEEEGGGTCCHHHHH
T ss_pred ccEEEEEecCCCCCCHHHHHHHHHh----cCCCEEEEEECcccccccCHHHHHH-Hh--cCCCcEEEEECCCCCCHHHHH
Confidence 9999999999887655444444443 4689999999999975422222222 11 122479999999999999999
Q ss_pred HHHHHhCC
Q 018949 276 DWILTKLP 283 (348)
Q Consensus 276 ~~i~~~l~ 283 (348)
++|.+.+.
T Consensus 397 ~~l~~~~~ 404 (482)
T 1xzp_A 397 ESIYRETQ 404 (482)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHHh
Confidence 99998764
No 42
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.87 E-value=2.8e-22 Score=169.89 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=106.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|++++..+. ....+..+.......+...+ ..+.+|||||. ..+..+ ...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 77 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ--ERFRTI-------TST 77 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTG--GGCSSC-------CGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCc--hhhhhh-------HHH
Confidence 4558999999999999999999998765 34445555555444444444 78999999994 333322 234
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|++++. .....++... .....+.|+++|+||+|+....... .....+....+ .+++++||++|
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 155 (181)
T 3tw8_B 78 YYRGTHGVIVVYDVTSAESFVNVKRWLHEI-NQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMG-IQLFETSAKEN 155 (181)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHH-HHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CCEEECBTTTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHH-HHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcC-CeEEEEECCCC
Confidence 578999999999998754 2222333333 2223679999999999987543211 11222222223 37999999999
Q ss_pred CCHHHHHHHHHHhC
Q 018949 269 HGVEDIRDWILTKL 282 (348)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (348)
.|+++++++|.+.+
T Consensus 156 ~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 156 VNVEEMFNCITELV 169 (181)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
No 43
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.87 E-value=2.2e-21 Score=166.59 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=108.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||+|++.+..+.. ....|... ....+...+..+.+|||||. ..+..+ +..++
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~-~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~ 88 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNE--DMIPTVGF-NMRKITKGNVTIKLWDIGGQ--PRFRSM-------WERYC 88 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC--SCCCCCSE-EEEEEEETTEEEEEEEECCS--HHHHTT-------HHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCC--ccCCCCce-eEEEEEeCCEEEEEEECCCC--HhHHHH-------HHHHH
Confidence 44589999999999999999999877642 11112111 12234567889999999995 332222 33457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~~ 267 (348)
..+|++++|+|+++.. .....++...+... ..+.|+++|+||+|+.......+....+... ....++++|||++
T Consensus 89 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 168 (188)
T 1zd9_A 89 RGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKE 168 (188)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCC
Confidence 8999999999998653 33444555554432 2679999999999998643333332322211 1234789999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|+++++++|.+.+..
T Consensus 169 g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 169 KDNIDITLQWLIQHSKS 185 (188)
T ss_dssp CTTHHHHHHHHHHTCC-
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998754
No 44
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.87 E-value=6.4e-22 Score=169.04 Aligned_cols=158 Identities=20% Similarity=0.191 Sum_probs=106.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|+|++..+. ...++++.......+. .....+.+|||||. ..+..+.. .
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~~-------~ 71 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ--EEYSAMRD-------Q 71 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCC--CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC-----CTTHH-------H
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCchheEEEEEEECCcEEEEEEEECCCc--HHHHHHHH-------H
Confidence 3458999999999999999999987754 3444454444443333 33456888999994 33333322 3
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+.......+....+....+ .+++++||++|
T Consensus 72 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 150 (189)
T 4dsu_A 72 YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYG-IPFIETSAKTR 150 (189)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHT-CCEEECCTTTC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 466799999999998653 22233333222211 257999999999999754322233333333333 37999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|+++++++|.+.+.
T Consensus 151 ~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 151 QGVDDAFYTLVREIR 165 (189)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 45
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=168.13 Aligned_cols=160 Identities=19% Similarity=0.207 Sum_probs=110.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||+|++.+....... .. .|.......+..++..+.+|||||.. .+..+ +..++
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~-~t~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~~~ 88 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-IL-PTIGFSIEKFKSSSLSFTVFDMSGQG--RYRNL-------WEHYY 88 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-CC-CCSSEEEEEEECSSCEEEEEEECCST--TTGGG-------GGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC-cC-CccceeEEEEEECCEEEEEEECCCCH--HHHHH-------HHHHH
Confidence 4569999999999999999999988732222 22 22233444556667899999999953 33322 23557
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhccccc---CCCCEEEEEeccCCCChhhHHHHHHHHH-hc--CCCCeEEEecC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYE-KF--TDVDEVIPVSA 265 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-~~--~~~~~i~~vSA 265 (348)
..+|++++|+|+++.. .....++...+.... .+.|+++|+||+|+.......+....+. .. ....+++++||
T Consensus 89 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (190)
T 2h57_A 89 KEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDA 168 (190)
T ss_dssp GGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccC
Confidence 8999999999998753 344445555444322 4789999999999986543333333332 11 12347999999
Q ss_pred CCCCCHHHHHHHHHHhCCC
Q 018949 266 KYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~ 284 (348)
++|.|+++++++|.+.+..
T Consensus 169 ~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 169 IKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTTBTHHHHHHHHHHHC--
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999988753
No 46
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.87 E-value=9.4e-22 Score=169.27 Aligned_cols=159 Identities=18% Similarity=0.145 Sum_probs=109.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
...+|+++|.+|||||||+|+|++..+.. ...+.++.......+..++ ..+.+|||||. ..+..+ ...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 84 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ--ERFRTI-------TSS 84 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCCCSSEEEEEEEEEETTEEEEEEEEEECCS--GGGCTT-------HHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEECCCc--Hhhhhh-------HHH
Confidence 34589999999999999999999877652 3344444444444444343 67999999994 333333 234
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|+++.. .....++.........+.|+++|+||+|+....... .....+....+ .+++++||++|
T Consensus 85 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 163 (196)
T 3tkl_A 85 YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-IPFLETSAKNA 163 (196)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CCEEEECTTTC
T ss_pred HHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CcEEEEeCCCC
Confidence 478999999999998743 233333333322223578999999999997643221 22233333444 38999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|+++++++|.+.+.
T Consensus 164 ~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 164 TNVEQSFMTMAAEIK 178 (196)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988764
No 47
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.87 E-value=6.8e-23 Score=180.57 Aligned_cols=164 Identities=19% Similarity=0.222 Sum_probs=115.6
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
.+..+|+++|.+|||||||+|+++... .....++.+++.......+......+.+|||||. ..+..+.. .
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~~~-------~ 83 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ--EKFGGLRD-------G 83 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSG--GGTSCCCH-------H
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCh--HHHhHHHH-------H
Confidence 355699999999999999999965443 3445677888888777777777788999999994 44443322 3
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
++..+|++++|+|+++.. .....++...... ..+.|+++|+||+|+............. ...+ .++++|||++|.
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~~~~-~~~~~~Sa~~~~ 160 (221)
T 3gj0_A 84 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKAKSIVFH-RKKN-LQYYDISAKSNY 160 (221)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-STTCCEEEEEECTTSSSCSSCGGGCCHH-HHHT-CEEEECBGGGTB
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCccccccccHHHHHHH-HHcC-CEEEEEeCCCCC
Confidence 467999999999998754 2233333333322 2579999999999997543211111111 1122 389999999999
Q ss_pred CHHHHHHHHHHhCCCCCCC
Q 018949 270 GVEDIRDWILTKLPLGPAY 288 (348)
Q Consensus 270 gi~eL~~~i~~~l~~~~~~ 288 (348)
|+++++++|.+.+...++.
T Consensus 161 gi~~l~~~l~~~l~~~~~~ 179 (221)
T 3gj0_A 161 NFEKPFLWLARKLIGDPNL 179 (221)
T ss_dssp TTTHHHHHHHHHHHTCTTC
T ss_pred CHHHHHHHHHHHHHhCccc
Confidence 9999999999887655443
No 48
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=4e-22 Score=169.12 Aligned_cols=161 Identities=19% Similarity=0.140 Sum_probs=105.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|++++..+......+.++.......+. .....+.+|||||.. .+. ..+..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~--~~~-------~~~~~ 79 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE--RFR-------SVTHA 79 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------C
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcH--HHH-------HHHHH
Confidence 4558999999999999999999988765333344444443333333 334589999999942 222 23456
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|++++. .....++.........+.|+++|+||+|+.....+ ......+....+ .+++++||++|
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 158 (180)
T 2g6b_A 80 YYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYG-LPFMETSAKTG 158 (180)
T ss_dssp CGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHT-CCEEECCTTTC
T ss_pred HccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 678999999999998754 22233333332222257899999999999753221 111222222223 37999999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 018949 269 HGVEDIRDWILTKLPL 284 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (348)
.|+++++++|.+.+..
T Consensus 159 ~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 159 LNVDLAFTAIAKELKR 174 (180)
T ss_dssp TTHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999887643
No 49
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.87 E-value=2.9e-22 Score=195.69 Aligned_cols=170 Identities=20% Similarity=0.241 Sum_probs=126.4
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh--hhhHHHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNVR 190 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~l~~~~~~~~~ 190 (348)
....+|+++|.+|+|||||+|++++.....++..+++|++.....+..++..+.+|||||+..... ...+........
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 345699999999999999999999988777889999999987777777888999999999743210 112222223344
Q ss_pred hhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh--hHHHHHHHHHhc---CCCCeEEEecC
Q 018949 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYEKF---TDVDEVIPVSA 265 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~---~~~~~i~~vSA 265 (348)
.+++.+|++|+|+|++.+....+..+...+.. .++|+++|+||+|+.... ..++....+... ....+++++||
T Consensus 273 ~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 350 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSA 350 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCT
T ss_pred HHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcC
Confidence 56789999999999999888888888887776 789999999999998532 223333333333 34568999999
Q ss_pred CCCCCHHHHHHHHHHhCCC
Q 018949 266 KYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~ 284 (348)
++|.|++++++.+.+.+..
T Consensus 351 ~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 351 LTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp TTCTTGGGHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999987643
No 50
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.87 E-value=3.8e-22 Score=168.97 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=109.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||++++.+..+. ....+++|.......+..++..+.+|||||.. .+..+ ...++
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~~~ 76 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVT-EQEAGGITQHIGAYQVTVNDKKITFLDTPGHE--AFTTM-------RARGA 76 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSS-CSSCCSSSTTCCCCEEEETTEEEEESCCCSSS--SSSCS-------CCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccc-cCCCCceeEeeeEEEEEeCCceEEEEECCCCH--HHHHH-------HHHHH
Confidence 5669999999999999999999998765 23344444444334455567889999999953 33322 22457
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcC-------CCCeEEEecCC
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT-------DVDEVIPVSAK 266 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~-------~~~~i~~vSA~ 266 (348)
..+|++++|+|++++...........+.. .+.|+++|+||+|+..... ......+.... ...+++++||+
T Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~l~~~~~--~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (178)
T 2lkc_A 77 QVTDIVILVVAADDGVMPQTVEAINHAKA--ANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSAK 153 (178)
T ss_dssp CCCCEEEEEEETTCCCCHHHHHHHHHHGG--GSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred hhCCEEEEEEECCCCCcHHHHHHHHHHHh--CCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence 88999999999987664444334444444 5799999999999986421 12222222211 11479999999
Q ss_pred CCCCHHHHHHHHHHhCC
Q 018949 267 YGHGVEDIRDWILTKLP 283 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~ 283 (348)
+|.|+++++++|.+.+.
T Consensus 154 ~~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 154 TKEGLDHLLEMILLVSE 170 (178)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhh
Confidence 99999999999987654
No 51
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.87 E-value=6e-22 Score=167.56 Aligned_cols=159 Identities=19% Similarity=0.218 Sum_probs=106.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|+|||||+|++++..+.. ...+..+.......+..+ ...+.+|||||. ..+..+ ...
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~-------~~~ 82 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ--ERFRSL-------IPS 82 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGGGG-------SHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEECCCc--HHHHHH-------HHH
Confidence 45689999999999999999999877642 233344444433333333 368999999994 333333 223
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH--HHHHHHHHhcCCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI--AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
++..+|++++|+|++++. .....++.........+.|+++|+||+|+...... ........ ..+ .+++++||++
T Consensus 83 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~-~~~~~~Sa~~ 160 (179)
T 2y8e_A 83 YIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK-ELN-VMFIETSAKA 160 (179)
T ss_dssp HHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHH-HHT-CEEEEEBTTT
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHH-HcC-CeEEEEeCCC
Confidence 467899999999998643 33333443333322357999999999999753321 12222222 223 4899999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|+++++++|.+.+..
T Consensus 161 ~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 161 GYNVKQLFRRVAAALPG 177 (179)
T ss_dssp TBSHHHHHHHHHHTCC-
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999987753
No 52
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=7.4e-22 Score=169.63 Aligned_cols=169 Identities=18% Similarity=0.180 Sum_probs=111.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|||||||+|+|++..+... .++.+.+.......+......+.+|||||. ..+..+ ...+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 84 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ--ERFRTL-------TPSY 84 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSS--GGGCCS-------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCc--hhhhhh-------hHHH
Confidence 345899999999999999999998775421 222233333333334445678999999995 333333 2344
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++|+|+|++++. .....++..+.... ..+.|+++|+||+|+............+....+ .+++++||++|.
T Consensus 85 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 163 (195)
T 1x3s_A 85 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHS-MLFIEASAKTCD 163 (195)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTT-CEEEECCTTTCT
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcC-CEEEEecCCCCC
Confidence 68999999999998753 23333333333321 157899999999999643211122222333333 479999999999
Q ss_pred CHHHHHHHHHHhCCCCCCCCCCc
Q 018949 270 GVEDIRDWILTKLPLGPAYYPKD 292 (348)
Q Consensus 270 gi~eL~~~i~~~l~~~~~~~~~~ 292 (348)
|+++++++|.+.+...++.++.+
T Consensus 164 gi~~l~~~l~~~~~~~~~~~~~~ 186 (195)
T 1x3s_A 164 GVQCAFEELVEKIIQTPGLWESE 186 (195)
T ss_dssp THHHHHHHHHHHHHTSGGGTCC-
T ss_pred CHHHHHHHHHHHHHhhhhhhccc
Confidence 99999999999887655554443
No 53
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.87 E-value=9.4e-22 Score=172.64 Aligned_cols=159 Identities=18% Similarity=0.158 Sum_probs=97.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||++++.+..+.. ....++...... .+......+.+|||||. ..+..+ ...
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~ 101 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPE--SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ--DDYDRL-------RPL 101 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC---------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEECCEEEEEEEEECCCc--hhhhHH-------HHH
Confidence 45699999999999999999999877642 222333332222 23334467999999994 333322 234
Q ss_pred hccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH-------------HHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~-------------~~~~~~~~~~ 256 (348)
++..+|++++|+|+++... .....+...+.....+.|+++|+||+|+.......+ ....+....+
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 181 (214)
T 2j1l_A 102 FYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVG 181 (214)
T ss_dssp ---CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcC
Confidence 5789999999999986542 222223333333335799999999999976543211 1233333445
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
..+++++||++|.|+++++++|.+.+.
T Consensus 182 ~~~~~~~SA~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 182 AVAYLECSARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp CSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 558999999999999999999988764
No 54
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.87 E-value=7.1e-22 Score=165.70 Aligned_cols=158 Identities=20% Similarity=0.184 Sum_probs=102.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|.+|+|||||+|++++.++.. ...+..+.......+. .....+.+|||||. ..+..+ +..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~-------~~~~ 72 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ--ERFRTI-------TTAY 72 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEESSSCEEEEEEECCTTG--GGTSCC-------CHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCCC--hhhhhh-------HHHH
Confidence 3489999999999999999999877642 2233333333333333 33468999999994 333333 2334
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
+..+|++++|+|+++.. .....++.........+.|+++|+||+|+.......+....+....+ .+++++||++|.|
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 151 (170)
T 1g16_A 73 YRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDDN 151 (170)
T ss_dssp HTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHT-CCEEECBTTTTBS
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcC-CeEEEEECCCCCC
Confidence 68999999999998653 22333333333322257899999999999543221222222332233 3799999999999
Q ss_pred HHHHHHHHHHhCC
Q 018949 271 VEDIRDWILTKLP 283 (348)
Q Consensus 271 i~eL~~~i~~~l~ 283 (348)
+++++++|.+.+.
T Consensus 152 v~~l~~~l~~~~~ 164 (170)
T 1g16_A 152 VNEIFFTLAKLIQ 164 (170)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987663
No 55
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.87 E-value=3.7e-22 Score=172.05 Aligned_cols=160 Identities=18% Similarity=0.151 Sum_probs=110.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|++.+..+. .....++.......+. .....+.+|||||. ..+..+ ...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 90 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIP--TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQ--EEYDRL-------RPL 90 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGTTT-------GGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCC--CccCCeeeeeeEEEEEECCEEEEEEEEECCCc--HHHHHH-------hHh
Confidence 4569999999999999999999988753 3344444444333333 33456799999994 333332 334
Q ss_pred hccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChh---hHHHHHHHHHhcCCCCeEEEecCC
Q 018949 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPG---EIAKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
++..+|++++|+|+++... .....+...+.....+.|+++|+||+|+.... ...+....+....+..+++++||+
T Consensus 91 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 170 (194)
T 3reg_A 91 SYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV 170 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTT
T ss_pred hccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecC
Confidence 5789999999999987542 22233444444433679999999999997521 112223333344455459999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 018949 267 YGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (348)
+|.|+++++++|.+.+..
T Consensus 171 ~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 171 AKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp TTBSHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987754
No 56
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.87 E-value=5.2e-22 Score=169.88 Aligned_cols=166 Identities=28% Similarity=0.340 Sum_probs=113.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
++..+|+++|++|||||||+|+|.+..+. +...+++|.......+..++..+.+|||||............+...+..
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~- 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII- 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHH-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHh-
Confidence 45679999999999999999999997754 4667888877777777777899999999996432211111111111111
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
...+|++++|+|.++ ...... +...+.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|++
T Consensus 83 ~~~~~~~i~v~d~~~-~~~~~~-~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 157 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA-LERNLY-LTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILG-VKVVPLSAAKKMGIE 157 (188)
T ss_dssp HHCCSEEEEEEEGGG-HHHHHH-HHHHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECBGGGTBSHH
T ss_pred ccCCCEEEEEecchh-HHHHHH-HHHHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhC-CCeEEEEecCCCCHH
Confidence 135899999999975 222223 3333333 57899999999998643211111222222223 379999999999999
Q ss_pred HHHHHHHHhCCCC
Q 018949 273 DIRDWILTKLPLG 285 (348)
Q Consensus 273 eL~~~i~~~l~~~ 285 (348)
++++++.+.+...
T Consensus 158 ~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 158 ELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988653
No 57
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=169.00 Aligned_cols=159 Identities=18% Similarity=0.201 Sum_probs=101.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|+|++..+... ..+..+.......+ ......+.+|||||. ..+..+ ...
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~~~-------~~~ 94 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEA-CKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ--ERFNSI-------TSA 94 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCS--GGGHHH-------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcC-CCCccceeEEEEEEEECCeEEEEEEEeCCCc--HHHHHH-------HHH
Confidence 445899999999999999999998876532 22222223322233 333468999999994 333322 334
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++|+|+|+++.. .....++.........+.|+++|+||+|+.....+ .+....+.......+++++||++|
T Consensus 95 ~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g 174 (192)
T 2il1_A 95 YYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDN 174 (192)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTT
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCC
Confidence 567899999999998754 22222222222212257999999999999754322 122333444433458999999999
Q ss_pred CCHHHHHHHHHHhC
Q 018949 269 HGVEDIRDWILTKL 282 (348)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (348)
.|+++++++|.+.+
T Consensus 175 ~gi~~l~~~l~~~i 188 (192)
T 2il1_A 175 FNVDEIFLKLVDDI 188 (192)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
No 58
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.87 E-value=1.8e-21 Score=167.96 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=106.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||++++.+..+....+ |.......+..++..+.+|||||. ..+..+ +..++
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~ 94 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNICFTVWDVGGQ--DKIRPL-------WRHYF 94 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEEEE----ETTEEEEEEEETTEEEEEEECC-------CTT-------HHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccccCC----cCceeEEEEEECCEEEEEEECCCC--HhHHHH-------HHHHh
Confidence 55699999999999999999999877653222 222333345567789999999995 333332 23346
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~~ 267 (348)
..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+....+... ....++++|||++
T Consensus 95 ~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~ 174 (192)
T 2b6h_A 95 QNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQ 174 (192)
T ss_dssp HTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTT
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCC
Confidence 7999999999998764 33444554444321 2579999999999997653333332222211 1224789999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 018949 268 GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (348)
|.|+++++++|.+.+.
T Consensus 175 g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 175 GTGLYDGLDWLSHELS 190 (192)
T ss_dssp TBTHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9999999999998774
No 59
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.87 E-value=7.8e-22 Score=173.15 Aligned_cols=164 Identities=18% Similarity=0.180 Sum_probs=107.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
...+|+++|.+|||||||+|+|++..+... ..+.+.+............ ..+.+|||||. ..+..+.. .
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~~~-------~ 80 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ--EKKAVLKD-------V 80 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSG--GGTSCCCH-------H
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCc--hhhchHHH-------H
Confidence 445899999999999999999998765422 3333333333322222222 67999999994 33333322 3
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++|+|+|+++.. .....++.........+.|+++|+||+|+.....+ ......+....+ .+++++||++|
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 159 (218)
T 4djt_A 81 YYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKN-YEYFEISAKTA 159 (218)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCC-CEEEEEBTTTT
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-CcEEEEecCCC
Confidence 367899999999998754 22333333332222246899999999999865332 222233333333 48999999999
Q ss_pred CCHHHHHHHHHHhCCCCCC
Q 018949 269 HGVEDIRDWILTKLPLGPA 287 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~~~~ 287 (348)
.|+++++++|.+.+.....
T Consensus 160 ~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 160 HNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp BTTTHHHHHHHHHHHCCTT
T ss_pred CCHHHHHHHHHHHHhcccc
Confidence 9999999999988765433
No 60
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.87 E-value=1.4e-21 Score=166.75 Aligned_cols=159 Identities=20% Similarity=0.143 Sum_probs=106.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|++++..+.. ...+..+.......+..+ ...+.+|||||.. .+. ..+..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~-------~~~~~ 78 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE--RFR-------SVTRS 78 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG--GGH-------HHHHT
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcH--HHH-------HHHHH
Confidence 45689999999999999999999877652 223333333333333333 3689999999953 322 23456
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|+++.. .....++.........+.|+++|+||+|+...... ......+....+ .+++++||++|
T Consensus 79 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 157 (186)
T 2bme_A 79 YYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENE-LMFLETSALTG 157 (186)
T ss_dssp TSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECCTTTC
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEecCCCC
Confidence 689999999999998744 22233333222222267999999999999643221 111222223333 48999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|++++++++.+.+.
T Consensus 158 ~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 158 ENVEEAFVQCARKIL 172 (186)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987663
No 61
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.87 E-value=2.1e-21 Score=165.93 Aligned_cols=158 Identities=17% Similarity=0.195 Sum_probs=110.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||+|++.+.......++.+ .....+..++..+.+|||||.. .+. .....++
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~--~~~-------~~~~~~~ 83 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG----FNIKTLEHRGFKLNIWDVGGQK--SLR-------SYWRNYF 83 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSS----EEEEEEEETTEEEEEEEECCSH--HHH-------TTGGGGC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCc----cceEEEEECCEEEEEEECCCCH--hHH-------HHHHHHh
Confidence 55699999999999999999999877322222222 2223344467899999999953 222 2234568
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~ 267 (348)
..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+....+.. .....+++++||++
T Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (186)
T 1ksh_A 84 ESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVT 163 (186)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCC
Confidence 8999999999998764 33334555544431 257999999999999865443333333221 12234799999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|+++++++|.+.+..
T Consensus 164 ~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 164 GEDLLPGIDWLLDDISS 180 (186)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987754
No 62
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.87 E-value=2e-21 Score=164.37 Aligned_cols=160 Identities=20% Similarity=0.192 Sum_probs=106.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|||||||+|++.+..+... .++.+.+.......+......+.+|||||. ..+..+ ...+
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~ 84 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ--ERFRAV-------TRSY 84 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTG--GGTCHH-------HHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCC--hHhhhh-------HHHH
Confidence 445899999999999999999998775421 122222333333333444578999999994 333322 3345
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|+++.. .....++.........+.|+++|+||+|+...... .+....+....+ .+++++||++|.
T Consensus 85 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 163 (179)
T 1z0f_A 85 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENG-LLFLEASAKTGE 163 (179)
T ss_dssp HHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECCTTTCT
T ss_pred hccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 68999999999998754 22233333222222267899999999999643221 112222323333 489999999999
Q ss_pred CHHHHHHHHHHhCC
Q 018949 270 GVEDIRDWILTKLP 283 (348)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (348)
|+++++++|.+.+.
T Consensus 164 gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 164 NVEDAFLEAAKKIY 177 (179)
T ss_dssp THHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999987653
No 63
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.86 E-value=1e-21 Score=178.92 Aligned_cols=164 Identities=33% Similarity=0.372 Sum_probs=117.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|++|||||||+|+|+|... .+...+++|.......+...+..+.+|||||+...............+ ...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNF-ILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHH-HHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHh-hhc
Confidence 345899999999999999999999887 477889999988888888888899999999975433322222222221 123
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccccCC-CCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDK-LPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
..+|++++|+|+++.. ....++.... . .+ .|+++|+||+|+............+....+ .+++++||++|.|++
T Consensus 80 ~~~d~vi~v~D~~~~~-~~~~~~~~~~-~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM-RNLFLTLELF-E--MEVKNIILVLNKFDLLKKKGAKIDIKKMRKELG-VPVIPTNAKKGEGVE 154 (271)
T ss_dssp TCCSEEEEEEEGGGHH-HHHHHHHHHH-H--TTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS-SCEEECBGGGTBTHH
T ss_pred cCCcEEEEEecCCcch-hhHHHHHHHH-h--cCCCCEEEEEEChhcCcccccHHHHHHHHHHcC-CcEEEEEeCCCCCHH
Confidence 7899999999998742 2222333332 3 34 999999999997643221111223333334 489999999999999
Q ss_pred HHHHHHHHhCCC
Q 018949 273 DIRDWILTKLPL 284 (348)
Q Consensus 273 eL~~~i~~~l~~ 284 (348)
++++.+.+.+..
T Consensus 155 ~l~~~i~~~~~~ 166 (271)
T 3k53_A 155 ELKRMIALMAEG 166 (271)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999987654
No 64
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.86 E-value=4.7e-22 Score=165.93 Aligned_cols=157 Identities=19% Similarity=0.183 Sum_probs=102.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|++|+|||||+|++.+..+.. ....++....... +......+.+|||||. ..+..+ ...
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--~~~~~~-------~~~ 70 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGT--EQFASM-------RDL 70 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCT--TCCHHH-------HHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHH
Confidence 34589999999999999999999877542 2223332222222 3333456999999994 333332 223
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+....+. ......+....+ .+++++||++
T Consensus 71 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 149 (167)
T 1kao_A 71 YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWG-CPFMETSAKS 149 (167)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-SCEEEECTTC
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhC-CCEEEecCCC
Confidence 467899999999998743 22333333332221 157999999999998653321 112222222223 3799999999
Q ss_pred CCCHHHHHHHHHHhC
Q 018949 268 GHGVEDIRDWILTKL 282 (348)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (348)
|.|+++++++|.+.+
T Consensus 150 ~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 150 KTMVDELFAEIVRQM 164 (167)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998764
No 65
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.86 E-value=1.3e-21 Score=165.80 Aligned_cols=161 Identities=18% Similarity=0.256 Sum_probs=110.1
Q ss_pred CCCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 111 ~~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
+..+..+|+++|.+|||||||+|++++..+. ....+++.......+..+ ...+.+|||||. ..+..+..
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~~~----- 75 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFV--SDYDPTIEDSYTKICSVDGIPARLDILDTAGQ--EEFGAMRE----- 75 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCC--SSCCTTCCEEEEEEEEETTEEEEEEEEECCCT--TTTSCCHH-----
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCc--cccCCCcCceEEEEEEECCEEEEEEEEECCCc--hhhHHHHH-----
Confidence 3445679999999999999999999987653 445555555444444444 367899999994 33333322
Q ss_pred HHhhccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEec
Q 018949 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVS 264 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vS 264 (348)
.++..+|++++|+|+++.. .....++...++.. ..+.|+++|+||+|+.....+ ......+....+ .+++++|
T Consensus 76 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~S 152 (181)
T 2fn4_A 76 --QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHH-VAYFEAS 152 (181)
T ss_dssp --HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECB
T ss_pred --HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEec
Confidence 3356899999999998743 33333443332221 257899999999999754322 122233333333 4899999
Q ss_pred CCCCCCHHHHHHHHHHhCC
Q 018949 265 AKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~ 283 (348)
|++|.|+++++++|.+.+.
T Consensus 153 a~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 153 AKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987664
No 66
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.86 E-value=3.6e-22 Score=181.98 Aligned_cols=161 Identities=22% Similarity=0.274 Sum_probs=112.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
.+|+++|.+|||||||+|+|.+.... +..++++|.....+.+.. +..+.+|||||............+...+.. ...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~-v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~-~~~ 80 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLL-SQR 80 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCC-CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHH-TTC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHh-cCC
Confidence 48999999999999999999998643 678889998877777776 788999999996443222222222222211 147
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHH
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~ 275 (348)
+|++++|+|+++.. ... .+...+.. .+.|+++|+||+|+.....+......+....+ .+++++||++|.|+++++
T Consensus 81 ~d~vi~V~D~t~~e-~~~-~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~vi~~SA~~g~gi~el~ 155 (272)
T 3b1v_A 81 ADSILNVVDATNLE-RNL-YLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG-VPVVATSALKQTGVDQVV 155 (272)
T ss_dssp CSEEEEEEEGGGHH-HHH-HHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT-SCEEECBTTTTBSHHHHH
T ss_pred CCEEEEEecCCchH-hHH-HHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC-CCEEEEEccCCCCHHHHH
Confidence 99999999997632 222 23333333 57999999999998643211111122222233 489999999999999999
Q ss_pred HHHHHhCCC
Q 018949 276 DWILTKLPL 284 (348)
Q Consensus 276 ~~i~~~l~~ 284 (348)
++|.+.+..
T Consensus 156 ~~i~~~~~~ 164 (272)
T 3b1v_A 156 KKAAHTTTS 164 (272)
T ss_dssp HHHHHSCTT
T ss_pred HHHHHHHhh
Confidence 999997754
No 67
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=1.3e-21 Score=168.42 Aligned_cols=158 Identities=16% Similarity=0.137 Sum_probs=107.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||++++.+..+. ....+++.......+..+ ...+.+|||||.. .+..+ ...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~--~~~~~-------~~~ 85 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE--DYDRL-------RPL 85 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSS--SSTTT-------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCc--chhHH-------HHH
Confidence 4458999999999999999999987653 334444444333334433 4789999999953 33322 234
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-------------HHHHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-------------AKKLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------------~~~~~~~~~~~~ 256 (348)
++..+|++++|+|+++.. ......+...+.....+.|+++|+||+|+...... .+....+....+
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 165 (194)
T 2atx_A 86 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG 165 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC
Confidence 578999999999998754 23322333333332358999999999999764211 112222333334
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
..+++++||++|.|+++++++|.+.+
T Consensus 166 ~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 166 ACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 44799999999999999999998765
No 68
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.86 E-value=4.2e-21 Score=165.57 Aligned_cols=155 Identities=20% Similarity=0.232 Sum_probs=102.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-------------------------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE------------------------------- 162 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~------------------------------- 162 (348)
+..+|+++|.+|||||||+|+|++..+.. ...+.+........+..++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHE-NTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCC-CcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 45689999999999999999999887542 2222222222222333322
Q ss_pred --------eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEE
Q 018949 163 --------YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLV 232 (348)
Q Consensus 163 --------~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv 232 (348)
..+.+|||||. ..+..+ ...++..+|++++|+|++++. .....++...... .+.|+++|
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~--~~~piilv 153 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQ--ERYASI-------VPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS--SNYIIILV 153 (208)
T ss_dssp CCCTTTCEEEEEEEECTTG--GGCTTT-------HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH--SCCEEEEE
T ss_pred cccCccceeEEEEEECCCc--HHHHHH-------HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh--CCCcEEEE
Confidence 78999999994 333332 334578999999999998764 2333344444333 34999999
Q ss_pred EeccCCCChh-hHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 233 LNKKDLIKPG-EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 233 ~NK~Dl~~~~-~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
+||+|+.... ...+... +....+ .+++++||++|.|+++++++|.+.+
T Consensus 154 ~NK~D~~~~~~~~~~~~~-~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 154 ANKIDKNKFQVDILEVQK-YAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp EECTTCC-CCSCHHHHHH-HHHHTT-CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred EECCCcccccCCHHHHHH-HHHHcC-CcEEEEecCCCCCHHHHHHHHHHHH
Confidence 9999943211 1222222 222333 3899999999999999999998765
No 69
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.86 E-value=1.5e-21 Score=166.31 Aligned_cols=159 Identities=18% Similarity=0.189 Sum_probs=104.7
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHH
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~ 189 (348)
..+..+|+++|.+|||||||+|++++..+. .....++......... .....+.+|||||. ..+..+..
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~------ 84 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFV--DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQ--EEFSAMRE------ 84 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCSC--GGGCSSHH------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCccceeEEEEEeCCcEEEEEEEECCCc--hhhHHHHH------
Confidence 345669999999999999999999987654 2333333333233333 33455777999994 34443322
Q ss_pred HhhccCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecC
Q 018949 190 RSAGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 190 ~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA 265 (348)
.++..+|++++|+|+++.. .....++...... ...+.|+++|+||+|+.....+ .+....+....+ .+++++||
T Consensus 85 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa 162 (183)
T 3kkq_A 85 -QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSA 162 (183)
T ss_dssp -HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT-CCEEEEBC
T ss_pred -HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC-CeEEEecc
Confidence 3367899999999998753 2233333333221 1267899999999998753221 112222333333 47999999
Q ss_pred C-CCCCHHHHHHHHHHhC
Q 018949 266 K-YGHGVEDIRDWILTKL 282 (348)
Q Consensus 266 ~-~g~gi~eL~~~i~~~l 282 (348)
+ +|.|+++++++|.+.+
T Consensus 163 ~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 163 KDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp SSSCBSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 9 9999999999998765
No 70
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=168.60 Aligned_cols=159 Identities=17% Similarity=0.183 Sum_probs=107.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecC-CCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN-KPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|||||||+|+|++..+..... +.+.+.......+......+.+|||||+. .+..+ ...+
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~~ 94 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE--RYRAI-------TSAY 94 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCC--TTCTT-------HHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCch--hhhhh-------hHHH
Confidence 44589999999999999999999887653322 22333333333344456789999999963 33332 2344
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++|+|+|+++.. .....++..+......+.|+++|+||+|+...... ......+....+ .+++++||++|.
T Consensus 95 ~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 173 (193)
T 2oil_A 95 YRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNG-LLFLETSALDST 173 (193)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEEECTTTCT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 78999999999998754 22233433333322357899999999999753221 112223333334 389999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++++++|.+.+
T Consensus 174 gi~~l~~~l~~~i 186 (193)
T 2oil_A 174 NVELAFETVLKEI 186 (193)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 71
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.86 E-value=1.1e-21 Score=163.84 Aligned_cols=156 Identities=18% Similarity=0.181 Sum_probs=102.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|+|||||+|++.+..+. ....+++....... +......+.+|||||.. .+..+ ...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~--~~~~~-------~~~ 71 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE--DYAAI-------RDN 71 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----CHHH-------HHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccC--CCCCCCcceEEEEEEEECCEEEEEEEEECCCcc--hhHHH-------HHH
Confidence 3458999999999999999999987753 33334443333332 33334689999999943 33322 334
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhh--HHHHHHHHHhcCCCCeEEEecCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+....+ ..+...... ..+ .+++++||+
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~-~~~~~~Sa~ 149 (168)
T 1u8z_A 72 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD-QWN-VNYVETSAK 149 (168)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH-HHT-CEEEECCTT
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH-HcC-CeEEEeCCC
Confidence 467899999999998644 22223333322221 14799999999999975322 122222222 223 379999999
Q ss_pred CCCCHHHHHHHHHHhC
Q 018949 267 YGHGVEDIRDWILTKL 282 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l 282 (348)
+|.|++++++++.+.+
T Consensus 150 ~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 150 TRANVDKVFFDLMREI 165 (168)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998765
No 72
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.86 E-value=5.1e-22 Score=174.49 Aligned_cols=161 Identities=12% Similarity=0.008 Sum_probs=108.5
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
.+..+|+++|.+|||||||++++++..+. .....|+...... .+......+.+|||||. ..+..+ ..
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~ 93 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTACLETEEQRVELSLWDTSGS--PYYDNV-------RP 93 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEC--CEEEEEEEEECCS--GGGTTT-------GG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCCeeeeeEEEEEEECCEEEEEEEEECCCC--HhHHHH-------HH
Confidence 35569999999999999999999988764 2333333333332 23445578999999994 333333 23
Q ss_pred hhccCccEEEEEecCCCCCchH--HHHHHHhcccccCCCCEEEEEeccCCCChh-------------hHHHHHHHHHhcC
Q 018949 191 SAGINADCIVVLVDACKAPERI--DEILEEGVGDHKDKLPILLVLNKKDLIKPG-------------EIAKKLEWYEKFT 255 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~~~~--~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~-------------~~~~~~~~~~~~~ 255 (348)
.++..+|++|+|+|+++..... ...|...+.....+.|+++|+||+|+.... ........+....
T Consensus 94 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 173 (214)
T 3q3j_B 94 LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL 173 (214)
T ss_dssp GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc
Confidence 4578999999999998754222 233444444433689999999999996421 1112223333334
Q ss_pred CCCeEEEecCCCCCC-HHHHHHHHHHhCCC
Q 018949 256 DVDEVIPVSAKYGHG-VEDIRDWILTKLPL 284 (348)
Q Consensus 256 ~~~~i~~vSA~~g~g-i~eL~~~i~~~l~~ 284 (348)
+..++++|||++|.| ++++|+.|.+.+..
T Consensus 174 ~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 174 GAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 444899999999998 99999999987754
No 73
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.86 E-value=1.4e-21 Score=170.30 Aligned_cols=158 Identities=17% Similarity=0.122 Sum_probs=109.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC--CCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||++++.+..+. ....+++.......+.. ..+.+.+|||||. ..+..+ ...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~ 97 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGL--EDYDRL-------RPL 97 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCCC--C-CCCCSEEEEEEEEECC-CEEEEEEEEECCS--GGGTTT-------GGG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCCC--CCcCCeecceeEEEEEECCEEEEEEEEECCCc--hhhHHH-------HHH
Confidence 4569999999999999999999987654 34445555544444443 3456679999995 333322 334
Q ss_pred hccCccEEEEEecCCCCCch--HHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-------------HHHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAPER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~--~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~~~~~~~~~~ 256 (348)
++..+|++++|+|+++.... ....+...+.....+.|+++|+||+|+....... .....+....+
T Consensus 98 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 4gzl_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcC
Confidence 57899999999999875422 2223444444333589999999999997644321 12233444455
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
..+++++||++|.|+++++++|.+.+
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 178 AVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred CcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 56899999999999999999998765
No 74
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.86 E-value=4.5e-22 Score=194.36 Aligned_cols=165 Identities=28% Similarity=0.353 Sum_probs=116.6
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
++.++|+|+|.+|||||||+|+|++.+...+.+.+++|++.....+...+..+.+|||||+.. ....+...+...+..+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~-~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI-GDEPFLAQIRQQAEIA 99 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC-------CCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCC-cchHHHHHHHHHHHhh
Confidence 445699999999999999999999999888889999999999888888889999999999752 2233455566677778
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
+..+|++|+|+|+..+....+.++...++. .++|+++|+||+|+..... ....+. ..+...++++||++|.|+.
T Consensus 100 ~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~~---~~~e~~-~lg~~~~~~iSA~~g~gv~ 173 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA---NIYDFY-SLGFGEPYPISGTHGLGLG 173 (456)
T ss_dssp HHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC------------CCSG-GGSSSSEEECCTTTCTTHH
T ss_pred HhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccchhhhh---hHHHHH-HcCCCceEEeecccccchH
Confidence 899999999999998888888888888877 7899999999999874321 111111 1233457899999999999
Q ss_pred HHHHHHHHhCCC
Q 018949 273 DIRDWILTKLPL 284 (348)
Q Consensus 273 eL~~~i~~~l~~ 284 (348)
+|++.+.+.++.
T Consensus 174 ~L~~~i~~~l~~ 185 (456)
T 4dcu_A 174 DLLDAVAEHFKN 185 (456)
T ss_dssp HHHHHHHTTGGG
T ss_pred HHHHHHHhhccc
Confidence 999999987753
No 75
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=2.1e-21 Score=165.25 Aligned_cols=157 Identities=15% Similarity=0.178 Sum_probs=108.3
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
.+..+|+++|++|||||||++++.+..+....++.+.+. ..+..++..+.+|||||... +..+ +..+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~--~~~~-------~~~~ 82 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV----ETLSYKNLKLNVWDLGGQTS--IRPY-------WRCY 82 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE----EEEEETTEEEEEEEEC------CCTT-------GGGT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce----EEEEECCEEEEEEECCCCHh--HHHH-------HHHH
Confidence 356699999999999999999999887755555554332 22344568899999999532 2222 2345
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAK 266 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~ 266 (348)
+..+|++++|+|+++.. .....++...+... ..+.|+++|+||+|+.......+....+... ....+++++||+
T Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 162 (183)
T 1moz_A 83 YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAI 162 (183)
T ss_dssp TTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGG
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCC
Confidence 78999999999998764 34445555555432 2679999999999997643333322222211 122378999999
Q ss_pred CCCCHHHHHHHHHHhC
Q 018949 267 YGHGVEDIRDWILTKL 282 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l 282 (348)
+|.|+++++++|.+.+
T Consensus 163 ~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 163 KGEGITEGLDWLIDVI 178 (183)
T ss_dssp GTBTHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999998765
No 76
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=1.7e-21 Score=169.98 Aligned_cols=159 Identities=19% Similarity=0.160 Sum_probs=105.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|++++..+.. ...+..+.......+..++ ..+.+|||||. ..+..+ +..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 88 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ--ERFRTI-------TTA 88 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCC-SSSCCCSCCEEEEEEEETTEEEEEEEECCTTG--GGGTCC-------CHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEEECCEEEEEEEEeCCCc--HHHHHH-------HHH
Confidence 44589999999999999999999877642 3333333333333333343 68999999994 333332 234
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
++..+|++++|+|+++.. .....++.........+.|+++|+||+|+............+....+ .+++++||++|.
T Consensus 89 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 167 (213)
T 3cph_A 89 YYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDD 167 (213)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHT-CCEEECBTTTTB
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 468999999999998653 22333333333222247899999999999533211122222222223 379999999999
Q ss_pred CHHHHHHHHHHhCC
Q 018949 270 GVEDIRDWILTKLP 283 (348)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (348)
|+++++++|.+.+.
T Consensus 168 gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 168 NVNEIFFTLAKLIQ 181 (213)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987663
No 77
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=168.02 Aligned_cols=160 Identities=18% Similarity=0.160 Sum_probs=104.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||++++.+..+.. ...+..+.......+..+ ...+.+|||||. ..+..+ ...
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~ 97 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSE-RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ--ERFRTI-------TQS 97 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTC--GGGHHH-------HHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCc--HhHHHH-------HHH
Confidence 44589999999999999999999877542 112222222222333333 368999999995 333322 345
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++|+|+|+++.. .....++.........+.|+++|+||+|+.....+ .+....+....+..+++++||++|
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g 177 (201)
T 2hup_A 98 YYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDS 177 (201)
T ss_dssp HHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTT
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 578999999999998643 23333433333222267999999999999753221 112233333344448999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|+++++++|.+.+.
T Consensus 178 ~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 178 SNVEEAFLRVATELI 192 (201)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988663
No 78
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.86 E-value=1.8e-21 Score=169.13 Aligned_cols=160 Identities=23% Similarity=0.205 Sum_probs=107.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|+|++..+.. ...+..+.......+. .....+.+|||||.. .+..+ ...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~ 76 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE--RFQSL-------GVA 76 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSG--GGSCS-------CCG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEeCCCcH--HHHHh-------HHH
Confidence 44589999999999999999999887642 2233333333333333 344789999999953 33322 234
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccc----cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA 265 (348)
++..+|++|+|+|++++. .....++....... ..+.|+++|+||+|+............+.......+++++||
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (207)
T 1vg8_A 77 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSA 156 (207)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBT
T ss_pred HHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeC
Confidence 578999999999998653 22333333332221 146899999999999743322223333333233458999999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 018949 266 KYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (348)
++|.|+++++++|.+.+.
T Consensus 157 ~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 157 KEAINVEQAFQTIARNAL 174 (207)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988764
No 79
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.86 E-value=2.4e-21 Score=169.50 Aligned_cols=159 Identities=19% Similarity=0.244 Sum_probs=101.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|||||||++++++..+. ...+.++.......+... +..+.+|||||.. .+.. . ....+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~---~---~~~~~ 75 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR--DTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE--SLRF---Q---LLDRF 75 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC--CBCCCCSCEEEEEECSSTTCCEEEEEECCCCH--HHHH---H---HHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--cccCCcceeeEEEEecCCCccEEEEEECCCCh--hHHH---H---HHHHH
Confidence 4558999999999999999999987754 333444433333233332 6789999999953 2221 0 23345
Q ss_pred ccCccEEEEEecCCCCCc---hHHHHHHHhccc---ccCCCCEEEEEeccCCCChhhHHHHHHHHHh-------------
Q 018949 193 GINADCIVVLVDACKAPE---RIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGEIAKKLEWYEK------------- 253 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~---~~~~~~~~~~~~---~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~------------- 253 (348)
+..+|++|+|+|+++... ....++...+.. ...+.|+++|+||+|+............+..
T Consensus 76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 155 (214)
T 2fh5_B 76 KSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAP 155 (214)
T ss_dssp GGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---
T ss_pred HhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcc
Confidence 789999999999986221 222233333221 1257899999999999865433222222211
Q ss_pred -----------cCC-------------CCeEEEecCCCC------CCHHHHHHHHHHhC
Q 018949 254 -----------FTD-------------VDEVIPVSAKYG------HGVEDIRDWILTKL 282 (348)
Q Consensus 254 -----------~~~-------------~~~i~~vSA~~g------~gi~eL~~~i~~~l 282 (348)
..+ ..++++|||++| .|+++++++|.+.+
T Consensus 156 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 156 STLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ---------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 111 457999999999 99999999998753
No 80
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.86 E-value=3.4e-21 Score=160.36 Aligned_cols=156 Identities=21% Similarity=0.189 Sum_probs=102.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|.+|+|||||+|++.+..+.. ....++....... .......+.+|||||.. .+..+ ...+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~--~~~~~-------~~~~ 71 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD--ECDPTIEDSYRKQVVIDGETCLLDILDTAGQE--EYSAM-------RDQY 71 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCS--SCCHH-------HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcc--ccCCccceEEEEEEEECCEEEEEEEEECCCch--hhhHH-------HHHh
Confidence 3589999999999999999999876542 2333333332222 23334678999999953 33322 2234
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+............+....+ .+++++||++|.
T Consensus 72 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 150 (166)
T 2ce2_X 72 MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYG-IPYIETSAKTRQ 150 (166)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT-CCEEEECTTTCT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcC-CeEEEecCCCCC
Confidence 67899999999997643 22222222222211 147999999999998763222222233333333 379999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++++++|.+.+
T Consensus 151 gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 151 GVEDAFYTLVREI 163 (166)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 81
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.86 E-value=8.2e-22 Score=167.61 Aligned_cols=160 Identities=24% Similarity=0.253 Sum_probs=106.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|++++..+. ....+++.......+..+ ...+.+|||||... +..+ ...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~-------~~~ 73 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFV--DSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE--YSIF-------PQT 73 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCT--TCCC-------CGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCCccccEEEEEEECCEEEEEEEEeCCCchh--hhHH-------HHH
Confidence 4569999999999999999999976643 334444444434444434 36789999999533 2222 224
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+.....+ ......+....+. +++++||++
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 152 (181)
T 3t5g_A 74 YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNA-AFLESSAKE 152 (181)
T ss_dssp GTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEECCTTS
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCC-cEEEEecCC
Confidence 478999999999998643 22333333332221 157999999999999654322 2223333333443 899999999
Q ss_pred CCCHHHHHHHHHHhCCCC
Q 018949 268 GHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~~ 285 (348)
|.|+++++++|.+.+...
T Consensus 153 ~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 153 NQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999877553
No 82
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.86 E-value=2.3e-21 Score=164.33 Aligned_cols=154 Identities=14% Similarity=0.211 Sum_probs=100.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||++++.+..+....++.+... .....++.....+.+|||||... ..++
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~--------------~~~~ 70 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD--------------AKFS 70 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC--------------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch--------------hHHH
Confidence 45689999999999999999999887653223322221 11222333346789999999532 1235
Q ss_pred cCccEEEEEecCCCCC--chHHHH---HHHhcccccCCCCEEEEEeccCCCC--hhhH-HHHHHHHHhcCCCCeEEEecC
Q 018949 194 INADCIVVLVDACKAP--ERIDEI---LEEGVGDHKDKLPILLVLNKKDLIK--PGEI-AKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~---~~~~~~~~~~~~p~ivv~NK~Dl~~--~~~~-~~~~~~~~~~~~~~~i~~vSA 265 (348)
+.+|++++|+|++++. .....+ +.........+.|+++|+||+|+.. .... .+....+....+..+++++||
T Consensus 71 ~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 150 (178)
T 2iwr_A 71 GWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXA 150 (178)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBT
T ss_pred HhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEec
Confidence 6799999999998754 222232 2222221125789999999999942 1111 111222222222348999999
Q ss_pred CCCCCHHHHHHHHHHhC
Q 018949 266 KYGHGVEDIRDWILTKL 282 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l 282 (348)
++|.|++++++++.+.+
T Consensus 151 ~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 151 TYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp TTTBTHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHH
Confidence 99999999999998765
No 83
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.86 E-value=2.8e-21 Score=163.85 Aligned_cols=159 Identities=21% Similarity=0.206 Sum_probs=100.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe---CCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS---GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
+..+|+++|.+|+|||||++++++..+.. ...+..+.......+. .....+.+|||||. ..+. ....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~-------~~~~ 76 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ--ERFQ-------SLGV 76 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCccceEEEEEEEEEcCCcEEEEEEEECCCC--hHhh-------hhhH
Confidence 45689999999999999999999876542 1222222222223333 23568999999994 2222 2244
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhcccc----cCCCCEEEEEeccCCCChhh--HHHHHHHHHhcCCCCeEEE
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIP 262 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~----~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~ 262 (348)
.++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+..... .......+.......++++
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~ 156 (182)
T 1ky3_A 77 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFL 156 (182)
T ss_dssp CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEE
T ss_pred HHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEE
Confidence 5688999999999998754 22233333322211 15789999999999964321 1222333333234458999
Q ss_pred ecCCCCCCHHHHHHHHHHhC
Q 018949 263 VSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 263 vSA~~g~gi~eL~~~i~~~l 282 (348)
+||++|.|+++++++|.+.+
T Consensus 157 ~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 157 TSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp EBTTTTBSHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHH
Confidence 99999999999999998765
No 84
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=169.30 Aligned_cols=159 Identities=18% Similarity=0.153 Sum_probs=103.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||++++++..+. ..+.+|+.......+..++ ..+.+|||||.. .+..+ ...
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~ 87 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYP--TEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQD--EFDKL-------RPL 87 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCST--TCSSS-------GGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCH--HHHHH-------hHh
Confidence 4568999999999999999999988753 4445555544444444443 568899999953 33332 224
Q ss_pred hccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhh-------------HHHHHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE-------------IAKKLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-------------~~~~~~~~~~~~~ 256 (348)
++..+|++++|+|+++... .....|...+.....+.|+++|+||+|+..... .......+....+
T Consensus 88 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (201)
T 2q3h_A 88 CYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK 167 (201)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC
Confidence 5789999999999987542 222223333333235899999999999975321 0112233333334
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
..++++|||++|.|+++++++|.+.+.
T Consensus 168 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 168 AASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 458999999999999999999987653
No 85
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.86 E-value=1.9e-21 Score=166.93 Aligned_cols=158 Identities=14% Similarity=0.112 Sum_probs=105.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
..+|+++|.+|||||||+|++++..+... .++.+.+..............+.+|||||.. .+..+ ...++
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~~~ 92 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE--RYRTI-------TTAYY 92 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCC--SSCCS-------GGGGG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcH--HHhhh-------HHHhc
Confidence 45899999999999999999998776422 2333333333333344446789999999953 33322 33557
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
..+|++++|+|+++.. .....++.........+.|+++|+||+|+...... .+....+....+ .+++++||++|.|
T Consensus 93 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g 171 (189)
T 2gf9_A 93 RGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLG-FEFFEASAKENIN 171 (189)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECBTTTTBS
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcC-CeEEEEECCCCCC
Confidence 8999999999997653 22233333322221257999999999999753221 112222332233 3899999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
+++++++|.+.+
T Consensus 172 i~~l~~~l~~~i 183 (189)
T 2gf9_A 172 VKQVFERLVDVI 183 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 86
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.86 E-value=4.6e-22 Score=169.02 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=99.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|+|||||++++.+..+. ....+++....... +......+.+|||||. ..+..+ ...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 75 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ--EDYNRL-------RPL 75 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC---CTTTTT-------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCeeeeeEEEEEEECCEEEEEEEEECCCC--hhhhhh-------HHh
Confidence 4568999999999999999999987653 23333333222111 2233456779999994 333322 234
Q ss_pred hccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-----------HHHHHHHHhcCCCC
Q 018949 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-----------AKKLEWYEKFTDVD 258 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-----------~~~~~~~~~~~~~~ 258 (348)
++..+|++++|+|+++... .....+...+.....+.|+++|+||+|+...... ......+....+..
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 155 (182)
T 3bwd_D 76 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAP 155 (182)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCS
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCC
Confidence 5789999999999986542 2222233333332257999999999998754432 12223333334445
Q ss_pred eEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 259 EVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 259 ~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
+++++||++|.|+++++++|.+.+.
T Consensus 156 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 156 AYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999988664
No 87
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=3.4e-21 Score=167.75 Aligned_cols=159 Identities=19% Similarity=0.180 Sum_probs=105.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC--CCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG--PEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||++++++..+.. ...+..+.+.....+.. ....+.+|||||. ..+. .....
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~--~~~~-------~~~~~ 94 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ--ERFR-------SITQS 94 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCS--GGGH-------HHHGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCc--HHHH-------HHHHH
Confidence 44589999999999999999999876542 22233333333333333 3468999999994 3322 22446
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|+++.. .....++.........+.|+++|+||+|+.....+ .+....+....+ .+++++||++|
T Consensus 95 ~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~g 173 (201)
T 2ew1_A 95 YYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQD-MYYLETSAKES 173 (201)
T ss_dssp GSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT-CCEEECCTTTC
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-CEEEEEeCCCC
Confidence 689999999999998654 22233333332222257899999999999743221 111222222223 47999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|+++++++|.+.+.
T Consensus 174 ~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 174 DNVEKLFLDLACRLI 188 (201)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987663
No 88
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=2.2e-21 Score=162.78 Aligned_cols=158 Identities=21% Similarity=0.227 Sum_probs=100.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|.+|||||||+|++++..+.. . ...+....... ........+.+|||||..+ +..+ ...+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~-~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~--~~~~-------~~~~ 71 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRE-S-YIPTVEDTYRQVISCDKSICTLQITDTTGSHQ--FPAM-------QRLS 71 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCS-S-CCCCSCEEEEEEEEETTEEEEEEEEECCSCSS--CHHH-------HHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-C-CCCCccccEEEEEEECCEEEEEEEEECCCchh--hHHH-------HHHh
Confidence 3589999999999999999999876542 1 11111111111 2233346799999999532 2222 2334
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhccc--ccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGD--HKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~--~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
+..+|++++|+|+++.. .....++...... ...+.|+++|+||+|+....++ ......+....+ .+++++||++
T Consensus 72 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 150 (172)
T 2erx_A 72 ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWK-CAFMETSAKL 150 (172)
T ss_dssp HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-CEEEECBTTT
T ss_pred cccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhC-CeEEEecCCC
Confidence 67799999999998643 2222333222211 1147899999999998654322 111122222223 3899999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|+++++++|.+.+..
T Consensus 151 ~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 151 NHNVKELFQELLNLEKR 167 (172)
T ss_dssp TBSHHHHHHHHHHTCCS
T ss_pred CcCHHHHHHHHHHHHhh
Confidence 99999999999998754
No 89
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.86 E-value=1.7e-21 Score=167.54 Aligned_cols=159 Identities=19% Similarity=0.190 Sum_probs=103.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|||||||+|++.+..+.... ++.+.+.......+......+.+|||||. ..+..+ ...+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 90 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ--ESFRSI-------TRSY 90 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTG--GGTSCC-------CHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCc--hhhhhh-------HHHH
Confidence 4458999999999999999999987765322 22222222222233333468999999994 343333 2234
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|+++.. .....++.........+.|+++|+||+|+.....+ .+....+....+ .+++++||++|.
T Consensus 91 ~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 169 (191)
T 2a5j_A 91 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHG-LIFMETSAKTAC 169 (191)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEEECTTTCT
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 68999999999998643 22333333333222357999999999999653221 112222222223 389999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++++++|.+.+
T Consensus 170 gi~~l~~~l~~~i 182 (191)
T 2a5j_A 170 NVEEAFINTAKEI 182 (191)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 90
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.86 E-value=2.2e-21 Score=166.33 Aligned_cols=157 Identities=18% Similarity=0.218 Sum_probs=109.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||+|++.+..+....++.+.+ ...+..++..+.+|||||... +..+ ...++
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~Dt~G~~~--~~~~-------~~~~~ 87 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN----LETLQYKNISFEVWDLGGQTG--VRPY-------WRCYF 87 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC----EEEEEETTEEEEEEEECCSSS--SCCC-------CSSSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE----EEEEEECCEEEEEEECCCCHh--HHHH-------HHHHh
Confidence 4569999999999999999999987765433333322 223444678999999999532 2222 23457
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHh---cCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEK---FTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~---~~~~~~i~~vSA~~ 267 (348)
..+|++++|+|++++. .....++...+... ..+.|+++|+||+|+.......+....... .....+++++||++
T Consensus 88 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (189)
T 2x77_A 88 SDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKT 167 (189)
T ss_dssp TTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence 8999999999998764 44445555554432 257999999999999865333333222221 11223799999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 018949 268 GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (348)
|.|+++++++|.+.+.
T Consensus 168 ~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 168 GDGLVEGMDWLVERLR 183 (189)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 9999999999988764
No 91
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.86 E-value=2.4e-21 Score=164.96 Aligned_cols=157 Identities=18% Similarity=0.175 Sum_probs=105.0
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
.+..+|+++|.+|+|||||+|++++..+. .....++.......+. .....+.+|||||.. .+..+ ..
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~ 84 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE--DYAAI-------RD 84 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCC--CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTT--CCHHH-------HH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC--CcCCCccceEEEEEEEECCEEEEEEEEECCCCc--ccHHH-------HH
Confidence 34568999999999999999999987753 3344444443333333 334679999999953 33322 23
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhh--HHHHHHHHHhcCCCCeEEEecC
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA 265 (348)
.++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+..... ..+. ..+....+ .+++++||
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~~-~~~~~~Sa 162 (187)
T 2a9k_A 85 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA-KNRAEQWN-VNYVETSA 162 (187)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHH-HHHHHHTT-CEEEECCT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHH-HHHHHHcC-CeEEEeCC
Confidence 4467899999999998643 22223333322221 14799999999999875322 2222 22223333 38999999
Q ss_pred CCCCCHHHHHHHHHHhC
Q 018949 266 KYGHGVEDIRDWILTKL 282 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l 282 (348)
++|.|+++++++|.+.+
T Consensus 163 ~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 163 KTRANVDKVFFDLMREI 179 (187)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998765
No 92
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.86 E-value=3.9e-22 Score=191.93 Aligned_cols=165 Identities=28% Similarity=0.399 Sum_probs=115.7
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCe-eEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEY-QMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
....+|+++|++|+|||||+|+|++..+..++..+++|.......+...+. .+.+|||||+.+ +..+.....+.+..
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d--~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD--VGELGRLRVEKARR 109 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTC--CCTTCCCCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCc--ccchhHHHHHHHHH
Confidence 345689999999999999999999998876788888888877666665544 899999999653 33332222344566
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCH
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGV 271 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi 271 (348)
++..+|++|+|+|+ +.......+...+.. .++|+++|+||+|+...... +....+....+ .+++++||++|.|+
T Consensus 110 ~l~~aD~vllVvD~--~~~~~~~~~l~~l~~--~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g-~~v~~vSAktg~gI 183 (423)
T 3qq5_A 110 VFYRADCGILVTDS--APTPYEDDVVNLFKE--MEIPFVVVVNKIDVLGEKAE-ELKGLYESRYE-AKVLLVSALQKKGF 183 (423)
T ss_dssp HHTSCSEEEEECSS--SCCHHHHHHHHHHHH--TTCCEEEECCCCTTTTCCCT-HHHHHSSCCTT-CCCCCCSSCCTTST
T ss_pred HHhcCCEEEEEEeC--CChHHHHHHHHHHHh--cCCCEEEEEeCcCCCCccHH-HHHHHHHHHcC-CCEEEEECCCCCCH
Confidence 78899999999999 455555666666666 58999999999999875543 23344444444 38899999999999
Q ss_pred HHHHHHHHHhCCCC
Q 018949 272 EDIRDWILTKLPLG 285 (348)
Q Consensus 272 ~eL~~~i~~~l~~~ 285 (348)
++++++|.+.++..
T Consensus 184 ~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 184 DDIGKTISEILPGD 197 (423)
T ss_dssp TTHHHHHHHHSCCC
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999999654
No 93
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.85 E-value=5.4e-21 Score=165.82 Aligned_cols=159 Identities=13% Similarity=0.111 Sum_probs=106.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeee-cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIV-TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
..+|+++|.+|||||||+|+|++..+... .++.+.+..............+.+|||||+. .+. ..+..++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~-------~~~~~~~ 78 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE--RYR-------TITTAYY 78 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG--GGH-------HHHHTTG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch--hhc-------chHHHhh
Confidence 45899999999999999999999876422 2223333333333334446789999999953 222 2245668
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGHG 270 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~g 270 (348)
..+|++|+|+|++++. .....++.........+.|+++|+||+|+...... ......+....+ .+++++||++|.|
T Consensus 79 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 157 (203)
T 1zbd_A 79 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG-FEFFEASAKDNIN 157 (203)
T ss_dssp GGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHT-CEEEECBTTTTBS
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCC-CeEEEEECCCCCC
Confidence 8999999999998754 22233333322221257899999999999753221 112222333333 3899999999999
Q ss_pred HHHHHHHHHHhCC
Q 018949 271 VEDIRDWILTKLP 283 (348)
Q Consensus 271 i~eL~~~i~~~l~ 283 (348)
+++++++|.+.+.
T Consensus 158 i~~l~~~l~~~i~ 170 (203)
T 1zbd_A 158 VKQTFERLVDVIC 170 (203)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 94
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.85 E-value=2e-21 Score=168.63 Aligned_cols=159 Identities=18% Similarity=0.153 Sum_probs=100.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|+|++..+... ..+..+.......+..+ ...+.+||||| +..+..+ +..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G--~~~~~~~-------~~~ 93 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQD-SNHTIGVEFGSRVVNVGGKTVKLQIWDTAG--QERFRSV-------TRS 93 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTT--HHHHSCC-------CHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCcc-CCCcccceeEEEEEEECCeeeEEEEEcCCC--cHhHHHH-------HHH
Confidence 445899999999999999999998876532 22222222222233333 47899999999 4333332 234
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++|+|+|+++.. .....++.........+.|+++|+||+|+.....+ ......+....+ .+++++||++|
T Consensus 94 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~g 172 (200)
T 2o52_A 94 YYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENE-LMFLETSALTG 172 (200)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEEECTTTC
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcC-CEEEEEeCCCC
Confidence 478999999999998754 22333333332222257999999999999643221 111222222333 48999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|+++++++|.+.+.
T Consensus 173 ~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 173 ENVEEAFLKCARTIL 187 (200)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987663
No 95
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.85 E-value=4e-21 Score=166.79 Aligned_cols=159 Identities=20% Similarity=0.180 Sum_probs=105.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEe-EEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR-ILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
...+|+++|.+|||||||++++.+..+... ..+.++... ....+......+.+|||||. ..+..+ ...+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~~ 93 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFENYIADIEVDGKQVELALWDTAGQ--EDYDRL-------RPLS 93 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSS-CCCSSCCCCEEEEEETTEEEEEEEECCCCS--GGGTTT-------GGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcc-cCCcccceEEEEEEECCEEEEEEEEECCCc--hhHHHH-------HHHh
Confidence 345899999999999999999998776421 122222222 11222333468999999994 333332 2245
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-------------HHHHHHHhcCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTDV 257 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~~~~~~~~~~~ 257 (348)
+..+|++++|+|+++.. ......+...+.....+.|+++|+||+|+....... +....+....+.
T Consensus 94 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 173 (201)
T 2gco_A 94 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISA 173 (201)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTC
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCC
Confidence 78999999999998643 223233444444333589999999999998653221 112223333444
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 258 DEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 258 ~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
.+++++||++|.|+++++++|.+.+
T Consensus 174 ~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 174 FGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999998754
No 96
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.85 E-value=8.7e-21 Score=162.45 Aligned_cols=158 Identities=15% Similarity=0.117 Sum_probs=103.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeE-EEEEeCC-----------CeeEEEEeCCCCchhhhhhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI-LGICSGP-----------EYQMILYDTPGIIEKKIHML 181 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~-~~~~~~~-----------~~~~~l~DtpG~~~~~~~~l 181 (348)
+..+|+++|.+|||||||+|++++..+.. ...+....... ...+... ...+.+|||||.. .+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~-- 84 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNS-KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE--RFR-- 84 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG--GGH--
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCc-CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH--HHH--
Confidence 45699999999999999999999876542 11222222222 2223322 4689999999953 222
Q ss_pred HHHHHHHHHhhccCccEEEEEecCCCCC--chHHHHHHHhccccc-CCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCC
Q 018949 182 DSMMMKNVRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDV 257 (348)
Q Consensus 182 ~~~~~~~~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~ 257 (348)
..+..++..+|++++|+|++++. .....++........ .+.|+++|+||+|+...... .+....+....+
T Consensus 85 -----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~- 158 (195)
T 3bc1_A 85 -----SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYG- 158 (195)
T ss_dssp -----HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-
T ss_pred -----HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-
Confidence 23456689999999999998754 222233332222211 57999999999999753221 112222222223
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 258 DEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 258 ~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
.+++++||++|.|+++++++|.+.+
T Consensus 159 ~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 159 IPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999999998765
No 97
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.85 E-value=1.1e-21 Score=184.23 Aligned_cols=167 Identities=23% Similarity=0.305 Sum_probs=119.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhh--hhhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKK--IHMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~--~~~l~~~~~~~~~~~~ 193 (348)
+|+++|.+|||||||+|+|++.+.. ++.++.+|.......+...+ ..+.+|||||+.+.. ...+.. .+.+.+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~----~fl~~i 234 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGH----QFLRHI 234 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHH----HHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCc-cccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHH----HHHHHH
Confidence 7999999999999999999988765 47888888888777777664 789999999975422 122322 334456
Q ss_pred cCccEEEEEecCCC---CC--chHHHHHHHhccccc---CCCCEEEEEeccCCCChhhHHHHHHHHHhcCC-CCeEEEec
Q 018949 194 INADCIVVLVDACK---AP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIKPGEIAKKLEWYEKFTD-VDEVIPVS 264 (348)
Q Consensus 194 ~~ad~iv~VvD~~~---~~--~~~~~~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~i~~vS 264 (348)
..+|++|+|+|+++ .. .... .+...+.... .++|+++|+||+|+....+ ....+..... ..+++++|
T Consensus 235 ~~~d~ll~VvD~s~~~~~~~~~~~~-~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e---~~~~l~~~l~~~~~v~~iS 310 (342)
T 1lnz_A 235 ERTRVIVHVIDMSGLEGRDPYDDYL-TINQELSEYNLRLTERPQIIVANKMDMPEAAE---NLEAFKEKLTDDYPVFPIS 310 (342)
T ss_dssp HHCCEEEEEEESSCSSCCCHHHHHH-HHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH---HHHHHHHHCCSCCCBCCCS
T ss_pred HhccEEEEEEECCcccccChHHHHH-HHHHHHHHhhhhhcCCCEEEEEECccCCCCHH---HHHHHHHHhhcCCCEEEEE
Confidence 78999999999976 22 2222 3333333221 4799999999999986543 1223333322 24789999
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCC--CCCCc
Q 018949 265 AKYGHGVEDIRDWILTKLPLGPA--YYPKD 292 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~~~~~--~~~~~ 292 (348)
|+++.|+++|+++|.+.+...++ .|+.+
T Consensus 311 A~tg~gi~eL~~~l~~~l~~~~~~~~y~~e 340 (342)
T 1lnz_A 311 AVTREGLRELLFEVANQLENTPEFPLYDEE 340 (342)
T ss_dssp SCCSSTTHHHHHHHHHHHTSCCCCCSSCSC
T ss_pred CCCCcCHHHHHHHHHHHHhhCccccCCCcc
Confidence 99999999999999998876554 44443
No 98
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.85 E-value=8.5e-22 Score=167.81 Aligned_cols=158 Identities=13% Similarity=0.081 Sum_probs=82.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
...+|+++|.+|||||||++++.+..+.. ...+..+.......+..+ ...+.+|||||. ..+.. ....
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~-------~~~~ 76 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNS-TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ--ERFRT-------ITTA 76 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC------------------CCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEcCCCC--hhhhh-------hHHH
Confidence 34589999999999999999999876542 222333333333333333 378999999994 22222 2335
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|++++. .....++.........+.|+++|+||+|+.....+ .+....+....+ .+++++||++|
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~ 155 (183)
T 2fu5_C 77 YYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYG-IKFMETSAKAN 155 (183)
T ss_dssp TTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHT-CEEEECCC---
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 578999999999998753 22333333332222257899999999999753221 112222222223 38999999999
Q ss_pred CCHHHHHHHHHHhC
Q 018949 269 HGVEDIRDWILTKL 282 (348)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (348)
.|+++++.+|.+.+
T Consensus 156 ~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 156 INVENAFFTLARDI 169 (183)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
No 99
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.85 E-value=6e-21 Score=163.64 Aligned_cols=159 Identities=21% Similarity=0.173 Sum_probs=101.1
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
.+..+|+++|.+|||||||+|+|++..+. ....+++.......+. .....+.+|||||.. .+.. ...
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~-------~~~ 87 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE--EYSA-------MRD 87 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCChH--HHHH-------HHH
Confidence 35569999999999999999999987654 2333444433333333 334669999999942 2222 234
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCC
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
.++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+.......+....+....+. +++++||++
T Consensus 88 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 166 (190)
T 3con_A 88 QYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGI-PFIETSAKT 166 (190)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred HhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 5588999999999998654 22222222221111 1479999999999987532111222223222333 799999999
Q ss_pred CCCHHHHHHHHHHhCC
Q 018949 268 GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~ 283 (348)
|.|+++++++|.+.+.
T Consensus 167 ~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 167 RQGVEDAFYTLVREIR 182 (190)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987653
No 100
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.85 E-value=2.9e-21 Score=167.30 Aligned_cols=160 Identities=19% Similarity=0.189 Sum_probs=100.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|||||||+|++++..+.. ..++.+.+.......+......+.+|||||.. .+..+ +..+
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~--~~~~~-------~~~~ 97 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE--RFRSI-------AKSY 97 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCT--TCHHH-------HHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCc--chhhh-------HHHH
Confidence 45699999999999999999999877532 22333333333333344445779999999953 33222 3344
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChh------hH-HHHHHHHHhcCCCCeEEEe
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG------EI-AKKLEWYEKFTDVDEVIPV 263 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~------~~-~~~~~~~~~~~~~~~i~~v 263 (348)
+..+|++|+|+|+++.. .....++..+......+.|+++|+||+|+.... .+ ......+....+ .+++++
T Consensus 98 ~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~ 176 (199)
T 2p5s_A 98 FRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG-ALFCET 176 (199)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-CEEEEC
T ss_pred HhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcC-CeEEEe
Confidence 67899999999998654 223333322222222579999999999986321 11 112222222223 389999
Q ss_pred cCCCCCCHHHHHHHHHHhCC
Q 018949 264 SAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 264 SA~~g~gi~eL~~~i~~~l~ 283 (348)
||++|.|+++++.+|.+.+.
T Consensus 177 SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 177 SAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp CTTTCTTHHHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988764
No 101
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=3.3e-21 Score=168.07 Aligned_cols=160 Identities=21% Similarity=0.189 Sum_probs=105.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|++.+..+... ...++...... .+......+.+|||||.. .+..+ ...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~ 92 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGQE--DYDRL-------RPL 92 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCT--TCTTT-------GGG
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCc--CCCcccceEEEEEEECCEEEEEEEEECCCcH--HHHHH-------HHh
Confidence 345899999999999999999998776422 22222222222 223334679999999953 33222 234
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH-------------HHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK-------------KLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~-------------~~~~~~~~~~ 256 (348)
++..+|++++|+|+++.. ......+...+.....+.|+++|+||+|+.......+ ....+....+
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 172 (207)
T 2fv8_A 93 SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQ 172 (207)
T ss_dssp GCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcC
Confidence 578999999999998643 3332334444443335899999999999976432221 1122223344
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
..+++++||++|.|+++++++|.+.+..
T Consensus 173 ~~~~~~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 173 AYDYLECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred CCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 4589999999999999999999987643
No 102
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=9.2e-22 Score=169.24 Aligned_cols=159 Identities=13% Similarity=0.137 Sum_probs=108.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
...+|+++|.+|||||||+|+|++..+.. ..++.+++..............+.+||||| +..+..+ ...+
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~~-------~~~~ 92 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAG--QERYRTI-------TTAY 92 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHH--HHHCHHH-------HHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCC--hHHHHHH-------HHHH
Confidence 34589999999999999999999866432 123334445545555566778999999999 4333322 3455
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++++|+|+++.. .....++.........+.|+++|+||+|+...... ......+....+. +++++||++|.
T Consensus 93 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 171 (191)
T 3dz8_A 93 YRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGF-DFFEASAKENI 171 (191)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECBTTTTB
T ss_pred HccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 78999999999998643 23333333332222257999999999998643221 1222233333343 89999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++++++|.+.+
T Consensus 172 gi~~l~~~l~~~i 184 (191)
T 3dz8_A 172 SVRQAFERLVDAI 184 (191)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998765
No 103
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.85 E-value=6.1e-21 Score=163.54 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=102.6
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe--CCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS--GPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
.+..+|+++|.+|||||||++++++..+... ...+ .......+. .....+.+|||||... +.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~--~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~----------- 81 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQE--ESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPE--LQ----------- 81 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCC--CCTT-CEEEEEEEEETTEEEEEEEEECSSSCC--HH-----------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCC--cCCC-cceEEEEEEECCEEEEEEEEECCCChh--hh-----------
Confidence 4556999999999999999999998776522 2222 222223333 3346788899999532 21
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCC--hhh-HHHHHHHHHhcCCCCeEEEec
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIK--PGE-IAKKLEWYEKFTDVDEVIPVS 264 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~--~~~-~~~~~~~~~~~~~~~~i~~vS 264 (348)
++..+|++++|+|+++.. .....++..+.... ..+.|+++|+||+|+.. ... ..+....+....+..++++||
T Consensus 82 -~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 160 (184)
T 3ihw_A 82 -FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETC 160 (184)
T ss_dssp -HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEB
T ss_pred -eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEec
Confidence 356799999999998754 23233433333321 14789999999999842 111 112233344444545899999
Q ss_pred CCCCCCHHHHHHHHHHhC
Q 018949 265 AKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~l 282 (348)
|++|.|++++|++|.+.+
T Consensus 161 a~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 161 ATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp TTTTBTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998765
No 104
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.85 E-value=3.4e-21 Score=161.22 Aligned_cols=157 Identities=20% Similarity=0.228 Sum_probs=103.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|+|||||+|++.+..+.. ...+..+...... .+......+.+|||||. ..+..+ ...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 73 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK-DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ--EEFDAI-------TKA 73 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC-CSSCCCSSSEEEEEEEETTEEEEEEEECCTTG--GGTTCC-------CHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCceEEEEEEEEEEECCEEEEEEEEcCCCc--HhHHHH-------HHH
Confidence 44589999999999999999999876542 1122222222222 23333568999999994 333333 223
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|+++.. .....++....... .+.|+++|+||+|+...... .+....+....+ .+++++||++|
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 151 (168)
T 1z2a_A 74 YYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLK-LRFYRTSVKED 151 (168)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT-CEEEECBTTTT
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcC-CeEEEEecCCC
Confidence 468999999999998753 22333333332222 57999999999998753221 112222322233 38999999999
Q ss_pred CCHHHHHHHHHHhC
Q 018949 269 HGVEDIRDWILTKL 282 (348)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (348)
.|+++++++|.+.+
T Consensus 152 ~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 152 LNVSEVFKYLAEKH 165 (168)
T ss_dssp BSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
No 105
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.85 E-value=2e-21 Score=169.80 Aligned_cols=160 Identities=19% Similarity=0.132 Sum_probs=109.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||++++.+..+. ....+++.......+ ......+.+|||||.. .+..+ ...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~--~~~~~-------~~~ 76 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQE--DYSRL-------RPL 76 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCC--CCCC---------CG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCccceeEEEEEEECCEEEEEEEEECCCcH--HHHHH-------HHh
Confidence 4568999999999999999999987653 333444433333333 3344689999999953 33332 234
Q ss_pred hccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhH---------HHHHHHHHhcCCCCeE
Q 018949 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI---------AKKLEWYEKFTDVDEV 260 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~---------~~~~~~~~~~~~~~~i 260 (348)
++..+|++|+|+|+++... .....|...+.....+.|+++|+||+|+...... ......+....+..++
T Consensus 77 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (212)
T 2j0v_A 77 SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAY 156 (212)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEE
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceE
Confidence 5789999999999986542 2222333443332258999999999998764331 2223333333444589
Q ss_pred EEecCCCCCCHHHHHHHHHHhCCC
Q 018949 261 IPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
+++||++|.|+++++++|.+.+..
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 157 IECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEccCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999987754
No 106
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.85 E-value=4.5e-21 Score=164.52 Aligned_cols=161 Identities=21% Similarity=0.222 Sum_probs=102.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|||||||+|++++..+.... ++.+.+.......+......+.+|||||. ..+.. .....+
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~------~~~~~~ 90 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ--ERFRK------SMVQHY 90 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCS--HHHHT------TTHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc--hhhhh------hhhHHH
Confidence 4569999999999999999999987764321 22222222222223333478999999994 22220 123345
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
+..+|++|+|+|+++.. .....++....... ..+.|+++|+||+|+.....+ ......+....+. +++++||++|
T Consensus 91 ~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~ 169 (189)
T 1z06_A 91 YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSM-PLFETSAKNP 169 (189)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-CEEECCSSSG
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCC-EEEEEeCCcC
Confidence 78999999999998643 22333333332221 267999999999999654221 2223333333443 7999999999
Q ss_pred ---CCHHHHHHHHHHhCC
Q 018949 269 ---HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ---~gi~eL~~~i~~~l~ 283 (348)
.|+++++++|.+.+.
T Consensus 170 ~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 170 NDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp GGGSCHHHHHHHHC----
T ss_pred CcccCHHHHHHHHHHHHh
Confidence 999999999987664
No 107
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.85 E-value=1.2e-21 Score=164.52 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=102.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|++++..+.. ...+..+.......+ ......+.+|||||.. .+.. ....
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~--~~~~-------~~~~ 74 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFND-KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE--RFHA-------LGPI 74 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCS-SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC----------------CC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCc-CCCCccceEEEEEEEEECCEEEEEEEEECCCcH--hhhh-------hHHH
Confidence 44589999999999999999999876542 222323323322233 3345679999999942 2222 2334
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|+++.. .....++.........+.|+++|+||+|+...... .+....+....+ .+++++||++|
T Consensus 75 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 153 (170)
T 1z08_A 75 YYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVG-AKHYHTSAKQN 153 (170)
T ss_dssp SSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEEEBTTTT
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEecCCCC
Confidence 578999999999998754 22233332222222257899999999999753221 112223333334 48999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|+++++++|.+.+.
T Consensus 154 ~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 154 KGIEELFLDLCKRMI 168 (170)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999987653
No 108
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.85 E-value=2.3e-21 Score=164.11 Aligned_cols=161 Identities=18% Similarity=0.116 Sum_probs=103.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC---CeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP---EYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
+..+|+++|.+|||||||++++.+..+.. ...+..+.+.....+... ...+.+|||||. ..+..+ ..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~--~~~~~~-------~~ 74 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGK-QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ--TIGGKM-------LD 74 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTH-HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTC--CTTCTT-------HH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCC--ccccch-------hh
Confidence 45689999999999999999999876531 111111122222233333 378999999994 333333 23
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhcccc--cCCCC-EEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEec
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH--KDKLP-ILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVS 264 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~--~~~~p-~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vS 264 (348)
.++..+|++++|+|+++.. .....++....... ..+.| +++|+||+|+.....+ .+....+....+ .+++++|
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~S 153 (178)
T 2hxs_A 75 KYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENG-FSSHFVS 153 (178)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT-CEEEEEC
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcC-CcEEEEe
Confidence 4478999999999998754 22223322222110 02456 8999999999753211 112222222223 3899999
Q ss_pred CCCCCCHHHHHHHHHHhCCCC
Q 018949 265 AKYGHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~l~~~ 285 (348)
|++|.|+++++++|.+.+...
T Consensus 154 a~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 154 AKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp TTTCTTHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999887653
No 109
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=6.4e-21 Score=164.42 Aligned_cols=160 Identities=18% Similarity=0.173 Sum_probs=102.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|+|++..+... ...+...... .........+.+|||||. ..+..+ ...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 75 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDT--YIPTIEDTYRQVISCDKSVCTLQITDTTGS--HQFPAM-------QRL 75 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCT--TSCCCCEEEEEEEEETTEEEEEEEEECCGG--GSCHHH-------HHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCc--ccCccccceeEEEEECCEEEEEEEEeCCCh--HHhHHH-------HHH
Confidence 445899999999999999999998765421 1112111111 223334567999999994 333322 233
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcc--cccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVG--DHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~--~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
++..+|++++|+|+++.. .....++..+.. ....+.|+++|+||+|+............+....+ .+++++||++
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~ 154 (199)
T 2gf0_A 76 SISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWK-CAFMETSAKM 154 (199)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHT-CEEEECBTTT
T ss_pred hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhC-CeEEEEecCC
Confidence 467899999999998643 222222222111 11146899999999999753211122222222223 3799999999
Q ss_pred CCCHHHHHHHHHHhCCCC
Q 018949 268 GHGVEDIRDWILTKLPLG 285 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~~ 285 (348)
|.|+++++++|.+.+...
T Consensus 155 ~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 155 NYNVKELFQELLTLETRR 172 (199)
T ss_dssp TBSHHHHHHHHHHHCSSS
T ss_pred CCCHHHHHHHHHHHHhhh
Confidence 999999999999988653
No 110
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.85 E-value=1e-21 Score=170.49 Aligned_cols=160 Identities=22% Similarity=0.250 Sum_probs=105.9
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE--eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC--SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
.+..+|+++|.+|||||||+|+|++..+. .....++.......+ ......+.+|||||.. .+..+ ..
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~ 90 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQD--EYSIL-------PY 90 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCC--TTCCC-------CG
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCcc--chHHH-------HH
Confidence 35569999999999999999999988765 233344433333333 3456788999999953 33222 23
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCC
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~ 266 (348)
.++..+|++++|+|+++.. .....++..+.... ..++|+++|+||+|+.....+. .....+....+. +++++||+
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~ 169 (201)
T 3oes_A 91 SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGA-TFMESSAR 169 (201)
T ss_dssp GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECCTT
T ss_pred HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCC-eEEEEeCC
Confidence 4578999999999998643 33333333333221 2478999999999987543221 122223333333 89999999
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 018949 267 YGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~~ 284 (348)
+|.|+++++++|.+.+..
T Consensus 170 ~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 170 ENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987754
No 111
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=3.3e-21 Score=187.34 Aligned_cols=169 Identities=25% Similarity=0.306 Sum_probs=119.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhh---hhHHHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIH---MLDSMMMKNVR 190 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~---~l~~~~~~~~~ 190 (348)
...+|+++|++|||||||+|+|++.....+++.+++|++...+.+..++..+.+|||||+...... ...........
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 446999999999999999999999988778999999999888888888889999999997321110 00000011233
Q ss_pred hhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhh--HHHHHHHHHh---cCCCCeEEEecC
Q 018949 191 SAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE--IAKKLEWYEK---FTDVDEVIPVSA 265 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~---~~~~~~i~~vSA 265 (348)
.++..+|++++|+|++.+....+..+...+.. .++|+++|+||+|+..... ..+....+.. .....+++++||
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 336 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQRMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSA 336 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBT
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 55778999999999998776666666666655 6899999999999986433 2222222222 223458999999
Q ss_pred CCCCCHHHHHHHHHHhCCC
Q 018949 266 KYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~~ 284 (348)
++|.|+++|++.+.+.+..
T Consensus 337 ~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 337 DKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999886643
No 112
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.85 E-value=4.8e-21 Score=166.09 Aligned_cols=158 Identities=18% Similarity=0.151 Sum_probs=106.3
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
.+..+|+++|.+|||||||+|++++..+. ....+++.......+..+ ...+.+|||||.. .+..+ ..
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~ 80 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE--DYAAI-------RD 80 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC--TTCCTTCCEEEEEEEEETTEEEEEEEEECCCTT--CCHHH-------HH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEcCCChh--hhHHH-------HH
Confidence 35569999999999999999999987753 344445444433333333 4579999999953 33322 23
Q ss_pred hhccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhh--HHHHHHHHHhcCCCCeEEEecC
Q 018949 191 SAGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGE--IAKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~i~~vSA 265 (348)
.++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+..... ..+...... ..+ .+++++||
T Consensus 81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~-~~~~~~Sa 158 (206)
T 2bov_A 81 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE-QWN-VNYVETSA 158 (206)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-HHT-CEEEEECT
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH-HhC-CeEEEEeC
Confidence 4467899999999998643 22333333332221 14799999999999975322 222222222 223 37999999
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 018949 266 KYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 266 ~~g~gi~eL~~~i~~~l~ 283 (348)
++|.|+++++++|.+.+.
T Consensus 159 ~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 159 KTRANVDKVFFDLMREIR 176 (206)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988763
No 113
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.85 E-value=5.2e-21 Score=160.55 Aligned_cols=156 Identities=20% Similarity=0.221 Sum_probs=97.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhh-hHHHHHHHHHhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHM-LDSMMMKNVRSA 192 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~-l~~~~~~~~~~~ 192 (348)
.+|+++|.+|||||||++++.+.........+ .+....... ++.....+.+|||||... +.. +. ..+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~-------~~~ 72 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEME-NSEDTYERRIMVDKEEVTLIVYDIWEQGD--AGGWLQ-------DHC 72 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC-----------------CHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCC-CcCCeeeEEEEECCeEEEEEEEECCCccc--cchhhh-------hhh
Confidence 38999999999999999999987654333222 223333322 333456789999999532 221 11 123
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhccccc-CCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
+..+|++++|+|+++.. .....++........ .+.|+++|+||+|+...... ......+....+. +++++||++|
T Consensus 73 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 151 (169)
T 3q85_A 73 LQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC-KHIETSAALH 151 (169)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECBTTTT
T ss_pred hccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCC-cEEEecCccC
Confidence 56799999999998743 334445444443321 37999999999999743221 1223333334444 8999999999
Q ss_pred CCHHHHHHHHHHhC
Q 018949 269 HGVEDIRDWILTKL 282 (348)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (348)
.|++++++++.+.+
T Consensus 152 ~~v~~l~~~l~~~i 165 (169)
T 3q85_A 152 HNTRELFEGAVRQI 165 (169)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998765
No 114
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.85 E-value=1.6e-20 Score=162.24 Aligned_cols=164 Identities=12% Similarity=0.036 Sum_probs=103.0
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE-eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHH
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVR 190 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~ 190 (348)
..+..+|+++|.+|||||||++++.+......+.....+.......+ ......+.+|||||. ..+..+.. ...
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~~~----~~~ 90 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQ--MDFFDPTF----DYE 90 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSS--CCTTCTTC----CHH
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCC--HHHHhhhh----hcc
Confidence 34566999999999999999999888543322221222222222222 256688999999994 33322210 002
Q ss_pred hhccCccEEEEEecCCCCCchHHHHHHHhccc---ccCCCCEEEEEeccCCCChhhH-------H-HHHHHHHhc---CC
Q 018949 191 SAGINADCIVVLVDACKAPERIDEILEEGVGD---HKDKLPILLVLNKKDLIKPGEI-------A-KKLEWYEKF---TD 256 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~---~~~~~p~ivv~NK~Dl~~~~~~-------~-~~~~~~~~~---~~ 256 (348)
.+++.+|++|+|+|+++........+..++.. ...+.|+++|+||+|+.+.... . .....+... ..
T Consensus 91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence 34678999999999988643333333333322 2368999999999999864321 1 112223331 22
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
..++++|||++ .|++++|..+.+.+
T Consensus 171 ~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 171 HLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CcceEEEEech-hhHHHHHHHHHHHh
Confidence 34899999999 99999999998765
No 115
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.84 E-value=7.7e-21 Score=164.51 Aligned_cols=161 Identities=19% Similarity=0.224 Sum_probs=105.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
...+|+++|.+|||||||+++|.+..... ...+.++....... ++.....+.+|||||... +.. .+ ...
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--~~~---~~---~~~ 92 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDS-AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD--AGG---WL---RDH 92 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCG-GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSG--GGH---HH---HHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCc-cCCCCcccceEEEEEEECCEEEEEEEEecCCCcc--chh---hh---HHH
Confidence 45599999999999999999998755432 23333443333333 333456789999999532 221 11 123
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+.....+ .+....+....+ .+++++||++
T Consensus 93 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sa~~ 171 (195)
T 3cbq_A 93 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLS-CKHIETSAAL 171 (195)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CEEEEEBTTT
T ss_pred hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhC-CEEEEEcCCC
Confidence 356899999999998643 33444444433221 147999999999999753321 112223333334 4899999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|+++++++|.+.+..
T Consensus 172 ~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 172 HHNTRELFEGAVRQIRL 188 (195)
T ss_dssp TBSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999987643
No 116
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=175.97 Aligned_cols=158 Identities=19% Similarity=0.203 Sum_probs=111.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+|+|.+|||||||+++|.+..+.... + |.......+...+..+.+||||| +..+..+ ...++
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~--p--T~~~~~~~~~~~~~~l~i~Dt~G--~~~~~~~-------~~~~~ 230 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI--P--TIGFNVETVEYKNISFTVWDVGG--QDKIRPL-------WRHYF 230 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE--E--ETTEEEEEEEETTEEEEEEECC-------CCS-------HHHHH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc--c--ccceEEEEEecCcEEEEEEECCC--CHhHHHH-------HHHHh
Confidence 4558999999999999999999988864322 2 33333445666788999999999 4444433 33447
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhcC---CCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT---DVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~---~~~~i~~vSA~~ 267 (348)
..+|++|+|+|+++.. .....++...+... ..++|+++|+||+|+.......+....+.... ...+++++||++
T Consensus 231 ~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~ 310 (329)
T 3o47_A 231 QNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATS 310 (329)
T ss_dssp TTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTT
T ss_pred ccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCC
Confidence 8999999999997644 44445555554432 25899999999999987554444444333221 234789999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|+++++++|.+.+..
T Consensus 311 g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 311 GDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp TBTHHHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999987654
No 117
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=7.1e-21 Score=164.34 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=102.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||++++.+.++.........+.......+......+.+|||||... .. ....++
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---~~-------~~~~~~ 96 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED---TI-------QREGHM 96 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC---CH-------HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc---cc-------chhhhh
Confidence 45689999999999999999999887643222222222222223344457799999999643 21 123446
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
..+|++++|+|+++.. .....++..+.... ..+.|+++|+||+|+.....+ ......+....+ .+++++||++|.
T Consensus 97 ~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~ 175 (196)
T 2atv_A 97 RWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELA-CAFYECSACTGE 175 (196)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-SEEEECCTTTCT
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhC-CeEEEECCCcCC
Confidence 7899999999998643 22233332222211 257999999999999753221 111122222223 489999999999
Q ss_pred -CHHHHHHHHHHhC
Q 018949 270 -GVEDIRDWILTKL 282 (348)
Q Consensus 270 -gi~eL~~~i~~~l 282 (348)
|+++++++|.+.+
T Consensus 176 ~gi~~l~~~l~~~i 189 (196)
T 2atv_A 176 GNITEIFYELCREV 189 (196)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 9999999998765
No 118
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.84 E-value=5.4e-21 Score=166.29 Aligned_cols=159 Identities=17% Similarity=0.132 Sum_probs=105.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+++|.+..+.. ...+..+....... +......+.+|||||. ..+..+ +..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~ 76 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ--ERFRTI-------TSS 76 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCSSCCCEEEEEEEETTEEEEEEEECCTTT--TTTTCC-------CGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEeCCCh--HHHHHH-------HHH
Confidence 34589999999999999999999877642 22233332322222 3333468999999994 333322 334
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|++++. .....++.........+.|+++|+||+|+.....+ .+....+....+ .+++++||++|
T Consensus 77 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g 155 (206)
T 2bcg_Y 77 YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANK-MPFLETSALDS 155 (206)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CCEEECCTTTC
T ss_pred hccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-CeEEEEeCCCC
Confidence 578999999999998754 22233333332222257899999999999764321 112233333334 37999999999
Q ss_pred CCHHHHHHHHHHhCC
Q 018949 269 HGVEDIRDWILTKLP 283 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~ 283 (348)
.|+++++++|.+.+.
T Consensus 156 ~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 156 TNVEDAFLTMARQIK 170 (206)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987663
No 119
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.84 E-value=3.8e-21 Score=165.26 Aligned_cols=158 Identities=19% Similarity=0.117 Sum_probs=102.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCC-------CCceEEeEEE-----EEeCCCeeEEEEeCCCCchhhhhhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-------PQTTRHRILG-----ICSGPEYQMILYDTPGIIEKKIHML 181 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~-------~~~t~~~~~~-----~~~~~~~~~~l~DtpG~~~~~~~~l 181 (348)
+..+|+++|.+|||||||++.+.+......... ...|...... .+......+.+|||||. ..+..+
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~ 90 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQ--VFYNAS 90 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSC--CSCSHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCCh--HHHHHH
Confidence 445899999999999999988876543221110 1112211111 22334567999999995 333333
Q ss_pred HHHHHHHHHhhccCccEEEEEecCCCCCch--------HHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHh
Q 018949 182 DSMMMKNVRSAGINADCIVVLVDACKAPER--------IDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK 253 (348)
Q Consensus 182 ~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~--------~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~ 253 (348)
...+++.+|++|+|+|++++... ...++. .++....+.|+++|+||+|+.......+. ..+..
T Consensus 91 -------~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~-~~~~~~~~~piilv~NK~Dl~~~~~~~~~-~~~~~ 161 (198)
T 3t1o_A 91 -------RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLA-EYGLTLDDVPIVIQVNKRDLPDALPVEMV-RAVVD 161 (198)
T ss_dssp -------HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHH-HTTCCTTSSCEEEEEECTTSTTCCCHHHH-HHHHC
T ss_pred -------HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHH-hhccccCCCCEEEEEEchhcccccCHHHH-HHHHH
Confidence 33458899999999999854211 111222 22222367999999999999765333333 33333
Q ss_pred cCCCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 254 FTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 254 ~~~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
..+..+++++||++|.|+++++++|.+.+
T Consensus 162 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 162 PEGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp TTCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred hcCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 44444899999999999999999998765
No 120
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.84 E-value=2.7e-21 Score=165.36 Aligned_cols=158 Identities=16% Similarity=0.129 Sum_probs=104.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||++++.+..+. .....+....... .+......+.+|||||. ..+..+ ...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 74 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGS--PYYDNV-------RPL 74 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCS--GGGTTT-------GGG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCC--hhhhhh-------HHh
Confidence 4558999999999999999999987654 2222232222222 23344578999999995 333333 224
Q ss_pred hccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhh------------H-HHHHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~------------~-~~~~~~~~~~~~ 256 (348)
++..+|++++|+|+++... .....|...+.....+.|+++|+||+|+..... + .+....+....+
T Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 154 (184)
T 1m7b_A 75 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 154 (184)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC
Confidence 5789999999999986542 221233333333335799999999999974211 0 112223333334
Q ss_pred CCeEEEecCC-CCCCHHHHHHHHHHhC
Q 018949 257 VDEVIPVSAK-YGHGVEDIRDWILTKL 282 (348)
Q Consensus 257 ~~~i~~vSA~-~g~gi~eL~~~i~~~l 282 (348)
..++++|||+ +|.|++++++.+.+.+
T Consensus 155 ~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 155 AATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 4589999999 6899999999998764
No 121
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.84 E-value=3.8e-20 Score=175.20 Aligned_cols=165 Identities=25% Similarity=0.389 Sum_probs=118.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|++|||||||+|+|.+.... +...+++|.......+...+..+.+|||||+.+..................
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPE-IASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCE-EECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 4558999999999999999999998754 566778887777666666778899999999755332222222222333445
Q ss_pred cCccEEEEEecCCCCC----chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 194 INADCIVVLVDACKAP----ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~----~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
..+|++++|+|++... .....++....... .+.|+++|+||+|+.....+......+.. . ..++++|||++|+
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~Dl~~~~~~~~~~~~~~~-~-~~~~~~iSA~~g~ 321 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKIDVADEENIKRLEKFVKE-K-GLNPIKISALKGT 321 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTTTCCHHHHHHHHHHHHH-T-TCCCEECBTTTTB
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECcccCChHHHHHHHHHHHh-c-CCCeEEEeCCCCc
Confidence 5799999999987643 23333333333321 37999999999999876655443333332 2 2478999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|+++|+++|.+.+
T Consensus 322 gi~~l~~~i~~~l 334 (357)
T 2e87_A 322 GIDLVKEEIIKTL 334 (357)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999876
No 122
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.84 E-value=9.8e-21 Score=166.01 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=103.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE--EEEeCC----------CeeEEEEeCCCCchhhhhhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL--GICSGP----------EYQMILYDTPGIIEKKIHML 181 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~--~~~~~~----------~~~~~l~DtpG~~~~~~~~l 181 (348)
+..+|+++|.+|||||||+|+|++..+.. ...+..+..... ..+... ...+.+||||| +..+.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G--~~~~~-- 98 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNP-KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAG--QERFR-- 98 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCC-EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEES--HHHHH--
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCc-CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCC--cHhHH--
Confidence 44589999999999999999999876531 111111111111 222322 56799999999 33322
Q ss_pred HHHHHHHHHhhccCccEEEEEecCCCCCc--hHHHHHHHhccccc--CCCCEEEEEeccCCCChhhH-HHHHHHHHhcCC
Q 018949 182 DSMMMKNVRSAGINADCIVVLVDACKAPE--RIDEILEEGVGDHK--DKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTD 256 (348)
Q Consensus 182 ~~~~~~~~~~~~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~ 256 (348)
..+..++..+|++|+|+|+++... ....+ ...+.... .+.|+++|+||+|+.....+ ......+....+
T Consensus 99 -----~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~-l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~ 172 (217)
T 2f7s_A 99 -----SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNW-MSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYG 172 (217)
T ss_dssp -----HHHHHHHTTCCEEEEEEETTCHHHHHHHHHH-HHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT
T ss_pred -----hHHHHHhcCCCEEEEEEECcCHHHHHHHHHH-HHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCC
Confidence 234456789999999999986542 22223 33332221 57899999999999753221 122333333334
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
.+++++||++|.|+++++++|.+.+
T Consensus 173 -~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 173 -IPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp -CCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred -CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999999998765
No 123
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.84 E-value=3.2e-22 Score=189.19 Aligned_cols=213 Identities=18% Similarity=0.203 Sum_probs=135.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCcee-----eecCCCC----------------------ceEE--------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-----IVTNKPQ----------------------TTRH-------------- 152 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~-----~~~~~~~----------------------~t~~-------------- 152 (348)
..++|+++|.+|||||||+|+|+|.++. .++..|+ +|..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4569999999999999999999998864 3343443 1111
Q ss_pred ---------e-EEEEEeCCCeeEEEEeCCCCchhh----hhhhHHHHHHHHHhhcc-CccEEEEEecCCCCCchHHH-HH
Q 018949 153 ---------R-ILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGI-NADCIVVLVDACKAPERIDE-IL 216 (348)
Q Consensus 153 ---------~-~~~~~~~~~~~~~l~DtpG~~~~~----~~~l~~~~~~~~~~~~~-~ad~iv~VvD~~~~~~~~~~-~~ 216 (348)
. ...+.......+.+|||||+.+.. .......+...+..++. ..+++++|+|++.+...... .+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 0 001112224679999999986421 11222233334444554 45667777888766544433 24
Q ss_pred HHhcccccCCCCEEEEEeccCCCChhh-HHHHHHHH--HhcCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCcc
Q 018949 217 EEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWY--EKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDI 293 (348)
Q Consensus 217 ~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~--~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~ 293 (348)
...+.. .+.|+++|+||+|+.+... ........ ....+..+++++||++|.|++++++++.+. .++.++.+.
T Consensus 190 ~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e---~~~f~~~~~ 264 (353)
T 2x2e_A 190 AKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE---RKFFLSHPS 264 (353)
T ss_dssp HHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH---HHHHHHCTT
T ss_pred HHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH---HHHhccCCc
Confidence 555544 6799999999999986432 12211100 001123467889999999999999998762 222333333
Q ss_pred cCCCchH---HHHHHHHHHHHHhhccCCCCc----------eEEEEeeEEE
Q 018949 294 VSEHPER---FFVGEIIREKIFMQYRNEVPY----------ACQVCNLTFQ 331 (348)
Q Consensus 294 ~~~~~~~---~~~~e~ire~~~~~~~~eip~----------~~~~~~~~~~ 331 (348)
.+..+.+ +++.+.+++.++..+++++|| .+++.++.|.
T Consensus 265 ~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i~~~~~~~~~~l~~~~ 315 (353)
T 2x2e_A 265 YRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYK 315 (353)
T ss_dssp TGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3444445 789999999999999999999 7666665553
No 124
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.84 E-value=4.5e-22 Score=190.49 Aligned_cols=191 Identities=21% Similarity=0.212 Sum_probs=102.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC---------------------C---CeeEEEEeCCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---------------------P---EYQMILYDTPG 172 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~---~~~~~l~DtpG 172 (348)
+|+|+|.||||||||+|+|++.+ ..++++|++|+....+.... + ..++.+|||||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 79999999999999999999988 55788999998776664311 1 35799999999
Q ss_pred CchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC------------chHH---------------------------
Q 018949 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP------------ERID--------------------------- 213 (348)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~------------~~~~--------------------------- 213 (348)
+.... .....+...+..+++.+|++++|+|++++. ....
T Consensus 81 ~~~~a--~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~ 158 (397)
T 1wxq_A 81 LVPGA--HEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIK 158 (397)
T ss_dssp ----------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTT
T ss_pred cccch--hhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 75421 111222233446689999999999998751 0000
Q ss_pred ---------------------------------------------HHHHHhcccccCCCCEEEEEeccCCCChhhHHHHH
Q 018949 214 ---------------------------------------------EILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKL 248 (348)
Q Consensus 214 ---------------------------------------------~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~ 248 (348)
..+...... ..+|+++|+||+|+.....+....
T Consensus 159 ~~~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~--~~kP~i~v~NK~D~~~~~~l~~l~ 236 (397)
T 1wxq_A 159 LQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRR--VNKPMVIAANKADAASDEQIKRLV 236 (397)
T ss_dssp SSCCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHH--HHSCEEEEEECGGGSCHHHHHHHH
T ss_pred hcCccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhc--cCCCEEEEEeCccccchHHHHHHH
Confidence 000000011 248999999999988433333333
Q ss_pred HHHHhcCCCCeEEEecCCCCCCHHHHHH-HHHHhCCCCCCCCCCcccCCCchHHHHHHHHHHHHHhhcc
Q 018949 249 EWYEKFTDVDEVIPVSAKYGHGVEDIRD-WILTKLPLGPAYYPKDIVSEHPERFFVGEIIREKIFMQYR 316 (348)
Q Consensus 249 ~~~~~~~~~~~i~~vSA~~g~gi~eL~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~~~~~~~ 316 (348)
..+... + .+++++||+.+.|+.+|++ .+.+.++..++.++.+..++.+.+ ..|.+|++++..+.
T Consensus 237 ~~~~~~-~-~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~--~~e~ire~~l~~~g 301 (397)
T 1wxq_A 237 REEEKR-G-YIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKR--ALMVIKEKVLDRFG 301 (397)
T ss_dssp HHHHHT-T-CEEEEECHHHHHHHHSCSSSCCCCSCC-------------------CTTHHHHHHTSSSS
T ss_pred HHHhhc-C-CcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHH--HHHHHHHHHHHHhC
Confidence 333222 2 4799999999999999888 888999999999999888776655 56778876665443
No 125
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.84 E-value=3.4e-21 Score=195.95 Aligned_cols=210 Identities=18% Similarity=0.204 Sum_probs=145.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEe-----------------------------------------
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR----------------------------------------- 153 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~----------------------------------------- 153 (348)
.++|+++|.+|+|||||+|+|+|..+.+....+ +|+.+
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~-~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC-SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc-ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 448999999999999999999998764332222 22111
Q ss_pred ----------E-EEEEeCCCeeEEEEeCCCCchhh----hhhhHHHHHHHHHhhc-cCccEEEEEecCCCCCchHHH-HH
Q 018949 154 ----------I-LGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAG-INADCIVVLVDACKAPERIDE-IL 216 (348)
Q Consensus 154 ----------~-~~~~~~~~~~~~l~DtpG~~~~~----~~~l~~~~~~~~~~~~-~~ad~iv~VvD~~~~~~~~~~-~~ 216 (348)
. ..+......++.++||||+.... ...+...+...+..++ ..+|++++|+|++.+....+. .+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 0 11112233468999999987522 1111222222333333 689999999999987655544 46
Q ss_pred HHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhc----CCCCeEEEecCCCCCCHHHHHHHHHH---hCCCCCCCC
Q 018949 217 EEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKF----TDVDEVIPVSAKYGHGVEDIRDWILT---KLPLGPAYY 289 (348)
Q Consensus 217 ~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~----~~~~~i~~vSA~~g~gi~eL~~~i~~---~l~~~~~~~ 289 (348)
...+.. .+.|+|+|+||+|+.+.......... ... .+..+++++||++|.|+++|++.+.+ .++..|++
T Consensus 210 l~~L~~--~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~y- 285 (772)
T 3zvr_A 210 AKEVDP--QGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSY- 285 (772)
T ss_dssp HHHHCT--TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTT-
T ss_pred HHHHHh--cCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccCCcch-
Confidence 666665 67999999999999865432111111 111 23457899999999999999999987 36556654
Q ss_pred CCcccCCCchHHHHHHHHHHHHHhhccCCCCc----------eEEEEeeEEE
Q 018949 290 PKDIVSEHPERFFVGEIIREKIFMQYRNEVPY----------ACQVCNLTFQ 331 (348)
Q Consensus 290 ~~~~~~~~~~~~~~~e~ire~~~~~~~~eip~----------~~~~~~~~~~ 331 (348)
+..++.+.++.++|++|++++..+++++|| .+++.++.|.
T Consensus 286 --d~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~ 335 (772)
T 3zvr_A 286 --RHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYK 335 (772)
T ss_dssp --GGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhC
Confidence 567789999999999999999999999999 7777776654
No 126
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.83 E-value=7.3e-21 Score=167.90 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=101.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeec-CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT-NKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+..+|+++|.+|||||||+++|.+..+.... ++.+.+.......+......+.+|||||. ..+..+ ...+
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~~ 82 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ--ERYRAI-------TSAY 82 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTT--TTTTCC-------CGGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCc--cchhhh-------HHHH
Confidence 3458999999999999999999988765322 22222222222222333368999999994 333322 2345
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..+|++|+|+|+++.. .....++..+......+.|+++|+||+|+.....+ ......+....+ .+++++||++|.
T Consensus 83 ~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 161 (223)
T 3cpj_B 83 YRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQ-LLFTETSALNSE 161 (223)
T ss_dssp TTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTT-CEEEECCCC-CC
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 78999999999998754 22233333332222257899999999999753221 112222333333 489999999999
Q ss_pred CHHHHHHHHHHhCCC
Q 018949 270 GVEDIRDWILTKLPL 284 (348)
Q Consensus 270 gi~eL~~~i~~~l~~ 284 (348)
|+++++++|.+.+..
T Consensus 162 gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 162 NVDKAFEELINTIYQ 176 (223)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987754
No 127
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.5e-20 Score=165.08 Aligned_cols=160 Identities=22% Similarity=0.225 Sum_probs=101.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
...+|+++|.+|||||||+|++.+.....+...+.++...... .++.....+.+|||+|.... .. . ....
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~-~~----~---l~~~ 107 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE-NE----W---LHDH 107 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH-HH----H---HHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch-hh----h---HHHH
Confidence 3458999999999999999999976543333333332222222 23333456789999994321 11 1 1234
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
+++.+|++|+|+|.++.. .....++..+... ...++|+++|+||+|+.....+. .....+....+ .++++|||++
T Consensus 108 ~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~-~~~~e~SAk~ 186 (211)
T 2g3y_A 108 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFD-CKFIETSAAV 186 (211)
T ss_dssp CCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECBTTT
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcC-CEEEEEeCCC
Confidence 578899999999998643 3333333333221 12579999999999996432211 11122222223 4799999999
Q ss_pred CCCHHHHHHHHHHhC
Q 018949 268 GHGVEDIRDWILTKL 282 (348)
Q Consensus 268 g~gi~eL~~~i~~~l 282 (348)
|.|++++|++|.+.+
T Consensus 187 g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 187 QHNVKELFEGIVRQV 201 (211)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998765
No 128
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.4e-20 Score=189.35 Aligned_cols=150 Identities=19% Similarity=0.160 Sum_probs=104.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecC------------------------------CCCceEEeEEEEEeCCCe
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTN------------------------------KPQTTRHRILGICSGPEY 163 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~~ 163 (348)
...+|+++|++|+|||||+|+|++....+... .+++|.......+...+.
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~ 245 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 245 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence 45699999999999999999999775432211 246677666666777888
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCC-------CchHHHHHHHhcccccCCC-CEEEEEec
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKL-PILLVLNK 235 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~-------~~~~~~~~~~~~~~~~~~~-p~ivv~NK 235 (348)
.+.+|||||+.+ +...+..++..+|++|+|+|++.+ ...+.......+.. .+. |+|+|+||
T Consensus 246 ~~~iiDTPG~e~---------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~--lgi~~iIVVvNK 314 (611)
T 3izq_1 246 NFTIVDAPGHRD---------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMNK 314 (611)
T ss_dssp EEEEEECCSSSC---------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT--TTCCEEEEEEEC
T ss_pred eEEEEECCCCcc---------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH--cCCCeEEEEEec
Confidence 999999999643 234556778999999999999864 22344444444444 344 59999999
Q ss_pred cCCCCh--hhHHHHHHHH----HhcC---CCCeEEEecCCCCCCHHHH
Q 018949 236 KDLIKP--GEIAKKLEWY----EKFT---DVDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 236 ~Dl~~~--~~~~~~~~~~----~~~~---~~~~i~~vSA~~g~gi~eL 274 (348)
+|+.+. .........+ .... ...++++|||++|.|+.++
T Consensus 315 iDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 315 MDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred ccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 999862 2222222222 2111 1358999999999999865
No 129
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.83 E-value=7.4e-21 Score=165.02 Aligned_cols=159 Identities=19% Similarity=0.186 Sum_probs=75.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceE-EeEEEEEeCC----CeeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTR-HRILGICSGP----EYQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~-~~~~~~~~~~----~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
+..+|+++|.+|||||||+++|.+...........|+. +.....+..+ ...+.+|||||.. .+. ..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~-------~~ 89 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD--LYK-------EQ 89 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH--HHH-------HH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH--HHH-------HH
Confidence 34589999999999999999999883222233444443 3333334433 5689999999952 222 23
Q ss_pred HHhhccCccEEEEEecCCCCC--chHHHHHHHhccccc---CCCCEEEEEeccCCCC-hhhH-HHHHHHHHhcCCCCeEE
Q 018949 189 VRSAGINADCIVVLVDACKAP--ERIDEILEEGVGDHK---DKLPILLVLNKKDLIK-PGEI-AKKLEWYEKFTDVDEVI 261 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~---~~~p~ivv~NK~Dl~~-~~~~-~~~~~~~~~~~~~~~i~ 261 (348)
...++..+|++++|+|++++. .....++........ .+.|+++|+||+|+.. ...+ .+....+....+ .+++
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~-~~~~ 168 (208)
T 2yc2_C 90 ISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNT-LDFF 168 (208)
T ss_dssp HSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTT-CEEE
T ss_pred HHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcC-CEEE
Confidence 456688999999999998754 233333333332222 4789999999999976 3221 122223333334 4899
Q ss_pred EecCCC-CCCHHHHHHHHHHhC
Q 018949 262 PVSAKY-GHGVEDIRDWILTKL 282 (348)
Q Consensus 262 ~vSA~~-g~gi~eL~~~i~~~l 282 (348)
++||++ |.|+++++++|.+.+
T Consensus 169 ~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 169 DVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp ECCC-------CHHHHHHHHHH
T ss_pred EeccCCCCcCHHHHHHHHHHHH
Confidence 999999 999999999998865
No 130
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.83 E-value=7.1e-20 Score=156.51 Aligned_cols=158 Identities=26% Similarity=0.384 Sum_probs=100.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh------hhhhHHHHHHHHH
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK------IHMLDSMMMKNVR 190 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~------~~~l~~~~~~~~~ 190 (348)
+|+++|.+|||||||+|++.+..+. ....+++|.......+. .+.+|||||+.... .............
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 77 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE 77 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCc-cCCCCCccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHHH
Confidence 7999999999999999999998754 45566666554443332 68999999963211 1111111111111
Q ss_pred hhccCccEEEEEecCCCCCchHHHH-----------HHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCC--
Q 018949 191 SAGINADCIVVLVDACKAPERIDEI-----------LEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV-- 257 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~~~~~~~-----------~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~-- 257 (348)
.....++++++|+|..........+ +...+.. .+.|+++|+||+|+.... ......+....+.
T Consensus 78 ~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~ 153 (190)
T 2cxx_A 78 DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNV--QEVINFLAEKFEVPL 153 (190)
T ss_dssp HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCH--HHHHHHHHHHHTCCG
T ss_pred hhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh--cCCceEEEeehHhccCcH--HHHHHHHHHHhhhhh
Confidence 1256678888888875321111111 2222333 679999999999998754 2222233322222
Q ss_pred ----CeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 258 ----DEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 258 ----~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
.+++++||++|.|+++++++|.+.+.
T Consensus 154 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 154 SEIDKVFIPISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp GGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hccCCcEEEEecCCCCCHHHHHHHHHHhcc
Confidence 25899999999999999999988764
No 131
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.83 E-value=7.9e-21 Score=165.86 Aligned_cols=158 Identities=16% Similarity=0.131 Sum_probs=104.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+++|.+..+. ..+..+........ ++.....+.+|||||. ..+..+ ...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~-------~~~ 95 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGS--PYYDNV-------RPL 95 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCS--GGGTTT-------GGG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCc--HhhhHH-------HHh
Confidence 4458999999999999999999987764 22222322222222 2344578999999995 333333 224
Q ss_pred hccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhh------------H-HHHHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE------------I-AKKLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~------------~-~~~~~~~~~~~~ 256 (348)
++..+|++|+|+|+++... .....|...+.....+.|+++|+||+|+..... + .+....+....+
T Consensus 96 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (205)
T 1gwn_A 96 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 175 (205)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC
Confidence 5789999999999986542 221233333333335799999999999974211 0 111223333334
Q ss_pred CCeEEEecCC-CCCCHHHHHHHHHHhC
Q 018949 257 VDEVIPVSAK-YGHGVEDIRDWILTKL 282 (348)
Q Consensus 257 ~~~i~~vSA~-~g~gi~eL~~~i~~~l 282 (348)
..++++|||+ +|.|++++|+.|.+.+
T Consensus 176 ~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 176 AATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 4589999999 6899999999998754
No 132
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=161.63 Aligned_cols=156 Identities=15% Similarity=0.084 Sum_probs=102.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||++++++..+. ..+..|+...... .+......+.+|||||. ..+..+ ..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~~--------~~ 87 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI--SEYDPNLEDTYSSEETVDHQPVHLRVMDTADL--DTPRNC--------ER 87 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----CCCT--------HH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceeeEEEEECCEEEEEEEEECCCC--CcchhH--------HH
Confidence 4558999999999999999999987753 3344444433222 23344577899999994 333332 13
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccc---cCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDH---KDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSA 265 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~---~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA 265 (348)
++..+|++++|+|+++.. .....++....... ..+.|+++|+||+|+.....+ .+....+....+ .+++++||
T Consensus 88 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa 166 (187)
T 3c5c_A 88 YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFG-CLFFEVSA 166 (187)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT-CEEEECCS
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcC-CcEEEEee
Confidence 467899999999998643 22333333332211 157999999999999643221 111222222233 38999999
Q ss_pred -CCCCCHHHHHHHHHHhC
Q 018949 266 -KYGHGVEDIRDWILTKL 282 (348)
Q Consensus 266 -~~g~gi~eL~~~i~~~l 282 (348)
++|.|++++++.|.+.+
T Consensus 167 ~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 167 CLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp SSCSHHHHHHHHHHHHHH
T ss_pred cCccccHHHHHHHHHHHH
Confidence 89999999999998765
No 133
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=6.5e-20 Score=180.97 Aligned_cols=158 Identities=19% Similarity=0.172 Sum_probs=114.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|.+|||||||+|+|++..+... . .|.......+..++..+.+|||||. ..+..+ +..++
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~--~--~T~~~~~~~~~~~~~~~~l~Dt~G~--~~~~~~-------~~~~~ 387 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTT--I--PTVGFNVETVTYKNVKFNVWDVGGQ--DKIRPL-------WRHYY 387 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCCC--C--CCSSEEEEEEESSSCEEEEEEECCC--GGGSGG-------GGGGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCCc--C--CccceeEEEEEeCCEEEEEEECCCc--HHHHHH-------HHHHh
Confidence 456999999999999999999998875422 2 2444555567778899999999994 333333 34568
Q ss_pred cCccEEEEEecCCCCC--chHHHHHHHhcccc-cCCCCEEEEEeccCCCChhhHHHHHHHHHhc---CCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAP--ERIDEILEEGVGDH-KDKLPILLVLNKKDLIKPGEIAKKLEWYEKF---TDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~-~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~---~~~~~i~~vSA~~ 267 (348)
..+|++|+|+|+++.. .....++..++... ..++|+|+|+||+|+.......+....+... ....++++|||++
T Consensus 388 ~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 467 (497)
T 3lvq_E 388 TGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 467 (497)
T ss_dssp TTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTT
T ss_pred ccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEEEECCC
Confidence 9999999999998754 34444555554432 2579999999999997654333333322211 1234699999999
Q ss_pred CCCHHHHHHHHHHhCCC
Q 018949 268 GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 268 g~gi~eL~~~i~~~l~~ 284 (348)
|.|+++++++|.+.+..
T Consensus 468 g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 468 GDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp TBTHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998865
No 134
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.82 E-value=3e-20 Score=166.97 Aligned_cols=177 Identities=15% Similarity=0.132 Sum_probs=114.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCC-CceEEeEEEEEeCCCeeEEEEeCCCCchhhhh---hhHHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-QTTRHRILGICSGPEYQMILYDTPGIIEKKIH---MLDSMMMKNV 189 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~---~l~~~~~~~~ 189 (348)
...+|+++|.+|||||||+|+|++.+.......+ ++|.......+..++..+.+|||||+.+.... .........+
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~ 99 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCY 99 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHH
Confidence 4458999999999999999999998876543333 47777777777888899999999998543211 1112222333
Q ss_pred HhhccCccEEEEEecCCCCCchHHHHHHHhcccc----cCCCCEEEEEeccCCCChhhHHH--------HHHHHHhcCCC
Q 018949 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDH----KDKLPILLVLNKKDLIKPGEIAK--------KLEWYEKFTDV 257 (348)
Q Consensus 190 ~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~NK~Dl~~~~~~~~--------~~~~~~~~~~~ 257 (348)
......+|++|+|+|++. ....+..+...+... ..+.|+|+|+||+|+.... +.+ .+..+....+.
T Consensus 100 ~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~-~~~~l~~~~~~~l~~l~~~~g~ 177 (247)
T 3lxw_A 100 LLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGS-LHDYVSNTENRALRELVAECGG 177 (247)
T ss_dssp HHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTT
T ss_pred HhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCC-HHHHHhhcccHHHHHHHHHcCC
Confidence 344599999999999975 444444444433331 1368999999999997532 111 12222222232
Q ss_pred CeEEEecCCC-----CCCHHHHHHHHHHhCC-CCCCCCCCcc
Q 018949 258 DEVIPVSAKY-----GHGVEDIRDWILTKLP-LGPAYYPKDI 293 (348)
Q Consensus 258 ~~i~~vSA~~-----g~gi~eL~~~i~~~l~-~~~~~~~~~~ 293 (348)
+++.+++.. +.|+++|++.|.+.+. .++..|+.+.
T Consensus 178 -~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~ 218 (247)
T 3lxw_A 178 -RVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSNEV 218 (247)
T ss_dssp -CEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHH
T ss_pred -eEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 345554443 6899999999999887 4566676654
No 135
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.82 E-value=1.5e-19 Score=167.57 Aligned_cols=162 Identities=14% Similarity=0.117 Sum_probs=113.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe-CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhcc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGI 194 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~ 194 (348)
.+|+++|.+|||||||+|++++.....++..+++|.......+. .++..+.+|||||. ..+ ....+......++.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~--~~~--~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQ--DVF--MENYFTKQKDHIFQ 79 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCS--HHH--HHHHHTTTHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCc--HHH--hhhhhhhHHHHHhc
Confidence 48999999999999999999987555456677777776666555 35789999999995 332 11111233445578
Q ss_pred CccEEEEEecCCCCCc--hHHHH--HHHhcccccCCCCEEEEEeccCCCChhhHH-------HHHHHHHhcCCC--CeEE
Q 018949 195 NADCIVVLVDACKAPE--RIDEI--LEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------KKLEWYEKFTDV--DEVI 261 (348)
Q Consensus 195 ~ad~iv~VvD~~~~~~--~~~~~--~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------~~~~~~~~~~~~--~~i~ 261 (348)
.+|++|+|+|+++... ....+ +...+.....+.|+++|+||+|+....... .....+....+. .+++
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~ 159 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGF 159 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEE
T ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9999999999987652 22211 111222223689999999999998733221 334445555553 6899
Q ss_pred EecCCCCCCHHHHHHHHHHhC
Q 018949 262 PVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~l 282 (348)
++||++ .|+.+++..+...+
T Consensus 160 ~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 160 PTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp ECCTTS-SHHHHHHHHHHHTT
T ss_pred EeeecC-ChHHHHHHHHHHHH
Confidence 999999 88999988877655
No 136
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.82 E-value=4.9e-22 Score=172.21 Aligned_cols=160 Identities=18% Similarity=0.142 Sum_probs=98.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|+|++..+.. ...+.++.......+..+ ...+.+|||||. ..+..+ ...
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~--~~~~~~-------~~~ 101 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ--ERFRTI-------TSS 101 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCC-HHHHHHCCSEEEEEEEETTEEEEEEEECCTTC--TTCCCC-------SCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCcccceEEEEEEEECCEEEEEEEEECCCc--HhHHHH-------HHH
Confidence 44589999999999999999999877542 222223333333333333 367999999994 333222 223
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++..+|++++|+|+++.. .....++.........+.|+++|+||+|+....... .....+....+ .+++++||++|
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~vSA~~g 180 (199)
T 3l0i_B 102 YYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-IPFLETSAKNA 180 (199)
T ss_dssp --CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTT-CCBCCCCC---
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcC-CeEEEEECCCC
Confidence 478999999999998754 233333333333223579999999999997543211 11122233333 37899999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 018949 269 HGVEDIRDWILTKLPL 284 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (348)
.|+++++++|.+.+..
T Consensus 181 ~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 181 TNVEQSFMTMAAEIKK 196 (199)
T ss_dssp HHHHHHHHHHTTTTTT
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999987754
No 137
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.82 E-value=7.8e-20 Score=173.08 Aligned_cols=166 Identities=23% Similarity=0.215 Sum_probs=108.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
.|+++|++|||||||+|+|.+... .+.+.+++|.+.....+..++..+.+|||||+.......+...+ ..+...+..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f-~~tl~~~~~a 258 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAF-FVTLSEAKYS 258 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHH-HHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHH-HHHHHHHHhC
Confidence 599999999999999999999876 46778888888777777777788999999997543222222223 3345568899
Q ss_pred cEEEEEecCCCCCc---hHHHHHHHhccccc-CCCCEEEEEeccCCCChhhH--HHHHHHH-Hhc-CCCCeEEEecCCCC
Q 018949 197 DCIVVLVDACKAPE---RIDEILEEGVGDHK-DKLPILLVLNKKDLIKPGEI--AKKLEWY-EKF-TDVDEVIPVSAKYG 268 (348)
Q Consensus 197 d~iv~VvD~~~~~~---~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~~~~--~~~~~~~-~~~-~~~~~i~~vSA~~g 268 (348)
|++++|+|++++.. .....+...+...+ .+.|+++|+||+|+.+.... ......+ ... ....+++++||++|
T Consensus 259 D~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g 338 (364)
T 2qtf_A 259 DALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKR 338 (364)
T ss_dssp SEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTT
T ss_pred CEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 99999999987641 11122233333221 57899999999999864311 1111111 222 22336899999999
Q ss_pred CCHHHHHHHHHHhCCC
Q 018949 269 HGVEDIRDWILTKLPL 284 (348)
Q Consensus 269 ~gi~eL~~~i~~~l~~ 284 (348)
.|+++|+++|.+.+..
T Consensus 339 ~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 339 TNLELLRDKIYQLATQ 354 (364)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcc
Confidence 9999999999987654
No 138
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.82 E-value=1.2e-19 Score=177.97 Aligned_cols=159 Identities=25% Similarity=0.323 Sum_probs=111.6
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCce------eeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHH
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKL------SIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMM 186 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~ 186 (348)
++..+|+++|++++|||||+++|++... ......+++|.+.....+..++..+.+|||||+. . +.
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~--~-------~~ 87 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHA--D-------LI 87 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHH--H-------HH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChH--H-------HH
Confidence 3556999999999999999999998761 1123444556555444455577899999999942 2 33
Q ss_pred HHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHH----hc--CCCCeE
Q 018949 187 KNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE----KF--TDVDEV 260 (348)
Q Consensus 187 ~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~----~~--~~~~~i 260 (348)
..+...+..+|++|+|+|++++...+.......+.. .++|+++|+||+|+.+..........+. .. ....++
T Consensus 88 ~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 88 RAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp HHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred HHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence 455667899999999999998877666666666665 6789999999999987544333322222 21 123589
Q ss_pred EEecCCCCCCHHHHHHHHHHhC
Q 018949 261 IPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l 282 (348)
+++||++|.|+++|+++|.+.+
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhh
Confidence 9999999999999999998865
No 139
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.70 E-value=1.2e-21 Score=170.36 Aligned_cols=158 Identities=18% Similarity=0.137 Sum_probs=104.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||++++.+..+. .....++....... +......+.+|||||. ..+.. ....
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~--~~~~~-------~~~~ 97 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ--EDYDR-------LRPL 97 (204)
Confidence 4568999999999999999999987653 23333433333222 2334456779999994 33222 2334
Q ss_pred hccCccEEEEEecCCCCC--chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH-------------HHHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAP--ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA-------------KKLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-------------~~~~~~~~~~~ 256 (348)
++..+|++++|+|+++.. ......+...+.....+.|+++|+||+|+....... .....+....+
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 3th5_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
Confidence 578899999999998654 222223444444322479999999999997543111 11122222233
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
..+++++||++|.|+++++++|.+.+
T Consensus 178 ~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 178 AVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 34789999999999999999987654
No 140
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.81 E-value=2.2e-19 Score=163.73 Aligned_cols=165 Identities=16% Similarity=0.164 Sum_probs=96.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecC-------CCCceEEeEEEEEeCCC--eeEEEEeCCCCchh-----hhhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN-------KPQTTRHRILGICSGPE--YQMILYDTPGIIEK-----KIHML 181 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~-------~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~-----~~~~l 181 (348)
.+|+++|.+|+|||||+|+|++.+...... .+.++.......+..++ ..+.+|||||+.+. .+..+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i 88 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 88 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHH
Confidence 489999999999999999999887654322 22233333333444433 58999999998432 12223
Q ss_pred HHHHHHHHHhhcc-------------CccEEEEEecCCC-CCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHH
Q 018949 182 DSMMMKNVRSAGI-------------NADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (348)
Q Consensus 182 ~~~~~~~~~~~~~-------------~ad~iv~VvD~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~ 247 (348)
...+...+..++. ++|+++++++.+. +....+..+...+.. ++|+|+|+||+|+....+....
T Consensus 89 ~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~~~~ 165 (274)
T 3t5d_A 89 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEECQQF 165 (274)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHHHHH
Confidence 2222222222222 3789999987665 566666666666554 7999999999999877665444
Q ss_pred HHHHHhcC--CCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 248 LEWYEKFT--DVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 248 ~~~~~~~~--~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
...+.... ...+++++||++++|+++++++|.+.++
T Consensus 166 ~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 166 KKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 33332211 2236789999999999999999999876
No 141
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.81 E-value=1.4e-19 Score=154.72 Aligned_cols=159 Identities=14% Similarity=0.089 Sum_probs=99.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCc-eEEeEEEEE-----eCCCeeEEEEeCCCCchhhhhhhHHHHHHHH
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT-TRHRILGIC-----SGPEYQMILYDTPGIIEKKIHMLDSMMMKNV 189 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~-t~~~~~~~~-----~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~ 189 (348)
.+|+++|.+|||||||++++.+...........| ........+ ......+.+||||| +..+..+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G--~~~~~~~~~------ 74 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAG--REEFYSTHP------ 74 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECS--HHHHHTTSH------
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCC--CHHHHHhhH------
Confidence 4899999999999999999998632212222222 222222221 12457899999999 444443322
Q ss_pred HhhccCccEEEEEecCCCCC---chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH----HHHHHHHhcCCCC---e
Q 018949 190 RSAGINADCIVVLVDACKAP---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA----KKLEWYEKFTDVD---E 259 (348)
Q Consensus 190 ~~~~~~ad~iv~VvD~~~~~---~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~----~~~~~~~~~~~~~---~ 259 (348)
.++..+|++++|+|.+++. .....|+...... ..+.|+++|+||+|+....... .....+....+.. +
T Consensus 75 -~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
T 2zej_A 75 -HFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR-ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRD 152 (184)
T ss_dssp -HHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH-CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEE
T ss_pred -HHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhh-CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhh
Confidence 3356789999999998763 2333444333222 2578999999999998765432 2223333333432 3
Q ss_pred EEEecCCCCC-CHHHHHHHHHHhCCC
Q 018949 260 VIPVSAKYGH-GVEDIRDWILTKLPL 284 (348)
Q Consensus 260 i~~vSA~~g~-gi~eL~~~i~~~l~~ 284 (348)
++++||++|. |+++|++.|.+.+..
T Consensus 153 ~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 153 YHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp EEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred eEEEecccCchhHHHHHHHHHHHHhc
Confidence 8999999996 999999999887654
No 142
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.81 E-value=5.8e-20 Score=158.55 Aligned_cols=159 Identities=23% Similarity=0.268 Sum_probs=97.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE--EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG--ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|.+|||||||+|++.+.....+...+.++.+.... .++.....+.+|||+|.... ...+. ..+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~-~~~~~-------~~~ 77 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGE-NEWLH-------DHC 77 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-----CTTG-------GGH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcch-hhhHH-------Hhh
Confidence 458999999999999999999975433233333332222222 33333456789999995321 12221 223
Q ss_pred ccCccEEEEEecCCCCC--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHH-HHHHHHHhcCCCCeEEEecCCCC
Q 018949 193 GINADCIVVLVDACKAP--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIA-KKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
++.+|++++|+|.++.. .....++..+... ...+.|+++|+||+|+.....+. .....+....+ .++++|||++|
T Consensus 78 ~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~-~~~~e~SA~~g 156 (192)
T 2cjw_A 78 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFD-XKFIETSAAVQ 156 (192)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTTT
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhC-CceEEeccccC
Confidence 56789999999998643 3333333222221 11578999999999986432211 11122222233 47899999999
Q ss_pred CCHHHHHHHHHHhC
Q 018949 269 HGVEDIRDWILTKL 282 (348)
Q Consensus 269 ~gi~eL~~~i~~~l 282 (348)
.|++++|+++.+.+
T Consensus 157 ~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 157 HNVKELFEGIVRQV 170 (192)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998866
No 143
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.81 E-value=3.2e-19 Score=171.46 Aligned_cols=161 Identities=20% Similarity=0.199 Sum_probs=107.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeE------EEE--------Ee-----CCCeeEEEEeCCCCc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRI------LGI--------CS-----GPEYQMILYDTPGII 174 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~------~~~--------~~-----~~~~~~~l~DtpG~~ 174 (348)
...+|+++|++|+|||||+|+|++...........++.... ... .. .....+.+|||||+.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 44589999999999999999999853221100111110000 000 00 011579999999953
Q ss_pred hhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHh
Q 018949 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEK 253 (348)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~ 253 (348)
+ + ...+...+..+|++++|+|++++. ..+...+...+... ...|+++|+||+|+.+..........+..
T Consensus 87 ~--~-------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~ 156 (403)
T 3sjy_A 87 V--L-------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQ 156 (403)
T ss_dssp G--G-------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred H--H-------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHHHHHH
Confidence 3 2 233455678999999999999876 55555555555442 33589999999999987654444433333
Q ss_pred cC-----CCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 254 FT-----DVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 254 ~~-----~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
.. ...+++++||++|.|+++|+++|.+.++.
T Consensus 157 ~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 157 FTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 21 24589999999999999999999997764
No 144
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.81 E-value=6.3e-19 Score=171.10 Aligned_cols=152 Identities=17% Similarity=0.141 Sum_probs=105.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeee------------------------------cCCCCceEEeEEEEEeCCCe
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV------------------------------TNKPQTTRHRILGICSGPEY 163 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~ 163 (348)
...+|+++|++|+|||||+++|++...... ....+.|.+.....+..++.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 445899999999999999999976532211 12246777777777778888
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCc-------hHHHHHHHhcccccCCCC-EEEEEec
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-------RIDEILEEGVGDHKDKLP-ILLVLNK 235 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~-------~~~~~~~~~~~~~~~~~p-~ivv~NK 235 (348)
.+.+|||||+.+ +...+..++..+|++|+|+|++++.. .+.......+.. .++| +|+|+||
T Consensus 96 ~~~iiDTPGh~~---------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK 164 (439)
T 3j2k_7 96 HFTILDAPGHKS---------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINK 164 (439)
T ss_pred EEEEEECCChHH---------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeec
Confidence 999999999532 23445566789999999999998753 344445545444 5677 9999999
Q ss_pred cCCCCh----hhHHHHHHHH---HhcCC-----CCeEEEecCCCCCCHHHHHH
Q 018949 236 KDLIKP----GEIAKKLEWY---EKFTD-----VDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 236 ~Dl~~~----~~~~~~~~~~---~~~~~-----~~~i~~vSA~~g~gi~eL~~ 276 (348)
+|+... .........+ ....+ ..+++++||++|.|++++.+
T Consensus 165 ~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 165 MDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 999642 1122222222 11222 35799999999999999654
No 145
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.80 E-value=1.5e-19 Score=178.74 Aligned_cols=117 Identities=21% Similarity=0.237 Sum_probs=87.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee---------------e------cCCCCceEEeEEEEEeCCCeeEEEEeCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------V------TNKPQTTRHRILGICSGPEYQMILYDTPG 172 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~---------------~------~~~~~~t~~~~~~~~~~~~~~~~l~DtpG 172 (348)
+..+|+|+|++|+|||||+|+|++....+ . ....+.|.......+.+.+..+++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 34489999999999999999996211110 0 11134444444555667789999999999
Q ss_pred CchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
+.+.. ..+..++..+|++|+|+|++++.......++..+.. .++|+++|+||+|+...
T Consensus 92 ~~df~---------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~--~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFT---------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL--RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp STTCC---------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT--TTCCEEEEEECTTSCCS
T ss_pred chhHH---------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccc
Confidence 64422 235567899999999999999888777777777766 68999999999999754
No 146
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.80 E-value=2.1e-19 Score=167.45 Aligned_cols=159 Identities=17% Similarity=0.106 Sum_probs=109.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|+|||||++++.+..+. ....+++.......+..++ ..+.+|||||.. .+..+ ...
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~--~~~~~-------~~~ 222 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE--DYDRL-------RPL 222 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCC--CSCCCCSEEEEEEEEEETTEEEEEEEEEECCCG--GGTTT-------GGG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCC--cccCCcccceeEEEEEECCEEEEEEEEeCCCch--hhhHH-------HHH
Confidence 4468999999999999999999987653 3455566655554444443 456699999953 33322 334
Q ss_pred hccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-------------HHHHHHHHhcCC
Q 018949 192 AGINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-------------AKKLEWYEKFTD 256 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-------------~~~~~~~~~~~~ 256 (348)
++..+|++++|+|+++... .....+...+.....++|+++|+||+|+...... ......+....+
T Consensus 223 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 302 (332)
T 2wkq_A 223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 302 (332)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcC
Confidence 5789999999999987542 2222233333332258999999999998653211 111223333445
Q ss_pred CCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 257 VDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 257 ~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
..++++|||++|.|++++++.|.+.+.
T Consensus 303 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 303 AVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 458999999999999999999988654
No 147
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.79 E-value=4.5e-19 Score=158.25 Aligned_cols=168 Identities=15% Similarity=0.236 Sum_probs=106.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCC--CceEEeEEEEEeCCCeeEEEEeCCCCchhhh--hhhHHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKP--QTTRHRILGICSGPEYQMILYDTPGIIEKKI--HMLDSMMMKNV 189 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~--~~l~~~~~~~~ 189 (348)
+..+|+++|.+|||||||+|+|++..+. .+..+ ++|.......+...+..+.+|||||+.+... ......+...+
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 106 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVF-HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCI 106 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCS-CC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcC-ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHH
Confidence 4569999999999999999999998874 33333 5677777777777888999999999865322 12233444555
Q ss_pred HhhccCccEEEEEecCCCCCchHHHHHHHhccccc--CCCCEEEEEeccCCCChhhHHH-------HHH-HHHhcCCCCe
Q 018949 190 RSAGINADCIVVLVDACKAPERIDEILEEGVGDHK--DKLPILLVLNKKDLIKPGEIAK-------KLE-WYEKFTDVDE 259 (348)
Q Consensus 190 ~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~-------~~~-~~~~~~~~~~ 259 (348)
..++..+|++|+|+|+++.......++..+...++ ...|+++|+||+|+.....+.+ ... ....... .
T Consensus 107 ~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~--~ 184 (239)
T 3lxx_A 107 LLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD--R 184 (239)
T ss_dssp HHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS--S
T ss_pred HhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC--E
Confidence 56678899999999997544433333333332211 3469999999999976544431 122 2223332 4
Q ss_pred EEEecCCC-----CCCHHHHHHHHHHhCCC
Q 018949 260 VIPVSAKY-----GHGVEDIRDWILTKLPL 284 (348)
Q Consensus 260 i~~vSA~~-----g~gi~eL~~~i~~~l~~ 284 (348)
++.+++.. +.|+.+|+..+.+.+..
T Consensus 185 ~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 185 YCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 56666553 36899999998887743
No 148
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.79 E-value=5.7e-21 Score=190.10 Aligned_cols=207 Identities=18% Similarity=0.198 Sum_probs=130.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCcee--eecCCCCceEEeEEEEE---------------------------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS--IVTNKPQTTRHRILGIC--------------------------------- 158 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~--~~~~~~~~t~~~~~~~~--------------------------------- 158 (348)
..++|+|+|.+|+|||||+|+|++.++. .++..+.|++......-
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 3458999999999999999999999875 45666766543211100
Q ss_pred ---eCCC---eeEEEEeCCCCchhhhhhhHHH--HHHHHHhhccCccEEEEEecCCCC-CchHHHHHHHhcccccCCCCE
Q 018949 159 ---SGPE---YQMILYDTPGIIEKKIHMLDSM--MMKNVRSAGINADCIVVLVDACKA-PERIDEILEEGVGDHKDKLPI 229 (348)
Q Consensus 159 ---~~~~---~~~~l~DtpG~~~~~~~~l~~~--~~~~~~~~~~~ad~iv~VvD~~~~-~~~~~~~~~~~~~~~~~~~p~ 229 (348)
.... ..+.+|||||+.......+... +...+..++..+|++|+|+|+++. .......+...+.. .+.|+
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~pv 221 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG--HEDKI 221 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--CGGGE
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--cCCCE
Confidence 0000 3689999999864221111111 234455567899999999999873 45555556666655 56899
Q ss_pred EEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCchHHHHHHHHHH
Q 018949 230 LLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEHPERFFVGEIIRE 309 (348)
Q Consensus 230 ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire 309 (348)
++|+||+|+....++......+.. ....++++|.... +...++.++.... +.+.+++..|+ |
T Consensus 222 ilVlNK~Dl~~~~el~~~~~~l~~--s~~~i~~vs~l~~-------------~~~~~~~~~~~~~-~~~~~~~~~E~--e 283 (550)
T 2qpt_A 222 RVVLNKADMVETQQLMRVYGALMW--ALGKVVGTPEVLR-------------VYIGSFWSQPLLV-PDNRRLFELEE--Q 283 (550)
T ss_dssp EEEEECGGGSCHHHHHHHHHHHHH--HHHHHHCCSSCCC-------------EEESCCSSSCCSS-CTTHHHHHHHH--H
T ss_pred EEEEECCCccCHHHHHHHHHHhhc--chhheeechHhhh-------------hccccCCCCcccC-CCCHHHHHHHH--H
Confidence 999999999987766555544431 0112233332211 1223444444444 67888888887 8
Q ss_pred HHHhhccCCCCceEEEE-eeEEEeccceEEEee
Q 018949 310 KIFMQYRNEVPYACQVC-NLTFQHWLIFVEFNA 341 (348)
Q Consensus 310 ~~~~~~~~eip~~~~~~-~~~~~~~~~~~~~~~ 341 (348)
+++..+ +++||+..+. ++.|..+...++|++
T Consensus 284 ~l~~~l-~elP~~~~v~~i~~~~~~~~~~~I~a 315 (550)
T 2qpt_A 284 DLFRDI-QGLPRHAALRKLNDLVKRARLVRVHA 315 (550)
T ss_dssp HHHHHH-HTTGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-hhccHHHHHHHHHHHhccCCeEEEEE
Confidence 888885 9999999888 566654333344443
No 149
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.79 E-value=7.8e-21 Score=187.52 Aligned_cols=158 Identities=20% Similarity=0.254 Sum_probs=116.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC-CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG-PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
+.++|+++|++|+|||||+++|.+..+.. ...+++|.+.....+.. .+..+.+|||||+. .+..+ ...+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~-~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe--~f~~~-------~~~~ 72 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAA-MEAGGITQHIGAFLVSLPSGEKITFLDTPGHA--AFSAM-------RARG 72 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHH-SSSCCBCCCTTSCCBCSSCSSCCBCEECSSSC--CTTTS-------BBSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccc-ccCCceeEEEeEEEEEeCCCCEEEEEECCChH--HHHHH-------HHHH
Confidence 56789999999999999999999877653 35666676655444444 45689999999953 33322 2245
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh--hHHHHHHHHH----hcCCCCeEEEecCC
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEWYE----KFTDVDEVIPVSAK 266 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~----~~~~~~~i~~vSA~ 266 (348)
+..+|++|+|+|++++...+....+..+.. .++|+++|+||+|+.... .......... ...+..+++++||+
T Consensus 73 ~~~aD~vILVVDa~dg~~~qt~e~l~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk 150 (537)
T 3izy_P 73 TQVTDIVILVVAADDGVMKQTVESIQHAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL 150 (537)
T ss_dssp SBSBSSCEEECBSSSCCCHHHHHHHHHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred HccCCEEEEEEECCCCccHHHHHHHHHHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence 788999999999999887777666666666 689999999999997532 1111111111 11223489999999
Q ss_pred CCCCHHHHHHHHHHhCC
Q 018949 267 YGHGVEDIRDWILTKLP 283 (348)
Q Consensus 267 ~g~gi~eL~~~i~~~l~ 283 (348)
+|.|+++|+++|...+.
T Consensus 151 tG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 151 TGENMMALAEATIALAE 167 (537)
T ss_dssp SSCSSHHHHHHHHHHHT
T ss_pred CCCCchhHHHHHHHhhh
Confidence 99999999999988764
No 150
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.78 E-value=4.8e-20 Score=184.93 Aligned_cols=159 Identities=16% Similarity=0.140 Sum_probs=89.0
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeec------------------------------CCCCceEEeEEEEEeCCCe
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVT------------------------------NKPQTTRHRILGICSGPEY 163 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~ 163 (348)
...+|+++|++|+|||||+|+|++....+.. ..+++|.......+..++.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 4558999999999999999999753222111 1346676666666667778
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-------chHHHHHHHhcccccCCCC-EEEEEec
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-------ERIDEILEEGVGDHKDKLP-ILLVLNK 235 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-------~~~~~~~~~~~~~~~~~~p-~ivv~NK 235 (348)
.+.+|||||+.+.... +..++..+|++|+|+|++.+. ..+.......+.. .++| +|+|+||
T Consensus 256 ~i~iiDTPGh~~f~~~---------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~iIvviNK 324 (592)
T 3mca_A 256 IYEIGDAPGHRDFISG---------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEIVVSVNK 324 (592)
T ss_dssp ---CCEEESSSEEEEE---------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCEEEEEEC
T ss_pred EEEEEECCChHHHHHH---------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEec
Confidence 8999999997542211 223467899999999998743 4455555555555 5666 9999999
Q ss_pred cCCCC--hhhHHHHHHHHHh----cCCC----CeEEEecCCCCCCHH--------------HHHHHHHHhCC
Q 018949 236 KDLIK--PGEIAKKLEWYEK----FTDV----DEVIPVSAKYGHGVE--------------DIRDWILTKLP 283 (348)
Q Consensus 236 ~Dl~~--~~~~~~~~~~~~~----~~~~----~~i~~vSA~~g~gi~--------------eL~~~i~~~l~ 283 (348)
+|+.+ ..........+.. ..+. .+++++||++|.|+. .|++.|...++
T Consensus 325 iDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 325 LDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred cccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 99975 3333333333332 2233 379999999999998 78888877654
No 151
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.78 E-value=5.8e-18 Score=163.04 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=107.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee--ecCCCCceEEeEEE---EEe----------------CC----CeeEEEE
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILG---ICS----------------GP----EYQMILY 168 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~--~~~~~~~t~~~~~~---~~~----------------~~----~~~~~l~ 168 (348)
...+|+++|++++|||||+++|++..... ....++.|...... ... .. ...+.+|
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 34589999999999999999999753211 12223444432211 110 00 1679999
Q ss_pred eCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-chHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHH
Q 018949 169 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (348)
Q Consensus 169 DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~ 247 (348)
||||+. . +...+...+..+|++|+|+|++++. ..+....+..+... ...|+++|+||+|+.+.......
T Consensus 89 DtPGh~--~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~~~iivviNK~Dl~~~~~~~~~ 158 (410)
T 1kk1_A 89 DAPGHE--A-------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQKNIIIAQNKIELVDKEKALEN 158 (410)
T ss_dssp ECSSHH--H-------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHH
T ss_pred ECCChH--H-------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEECccCCCHHHHHHH
Confidence 999942 2 2344556678999999999999875 55544444444432 33589999999999876543222
Q ss_pred HHHHHhc-----CCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 248 LEWYEKF-----TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 248 ~~~~~~~-----~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
...+... ....+++++||++|.|+++|+++|.+.++.
T Consensus 159 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 159 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 2222221 134589999999999999999999998764
No 152
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.77 E-value=1.6e-18 Score=164.50 Aligned_cols=145 Identities=15% Similarity=0.105 Sum_probs=106.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
+|+++|++|+|||||+++|+ ..+.|.......+..++..+.+|||||+.+ + ...+...+..+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~--f-------~~~~~~~~~~a 84 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK--T-------LKSLITALNIS 84 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTT--C-------HHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHH--H-------HHHHHHHHHHC
Confidence 79999999999999999998 122233333344566778899999999643 2 22344456899
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCE-EEEEe-ccCCCChhhHHHHHHHHHhcC-----CCCeEEE--ecCCC
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLN-KKDLIKPGEIAKKLEWYEKFT-----DVDEVIP--VSAKY 267 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~N-K~Dl~~~~~~~~~~~~~~~~~-----~~~~i~~--vSA~~ 267 (348)
|++|+|+| +.+...+...+...+.. .++|. ++|+| |+|+ +..........+.... ...++++ +||++
T Consensus 85 D~ailVvd-~~g~~~qt~e~~~~~~~--~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~ 160 (370)
T 2elf_A 85 DIAVLCIP-PQGLDAHTGECIIALDL--LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSA 160 (370)
T ss_dssp SEEEEEEC-TTCCCHHHHHHHHHHHH--TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTS
T ss_pred CEEEEEEc-CCCCcHHHHHHHHHHHH--cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEeccccccc
Confidence 99999999 87777766666666655 57888 99999 9999 6544333333333322 2358999 99999
Q ss_pred ---CCCHHHHHHHHHHhCC
Q 018949 268 ---GHGVEDIRDWILTKLP 283 (348)
Q Consensus 268 ---g~gi~eL~~~i~~~l~ 283 (348)
|.|+++|++.|.+.++
T Consensus 161 ~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 161 KNPFEGVDELKARINEVAE 179 (370)
T ss_dssp SSTTTTHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHhhcc
Confidence 9999999999988764
No 153
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.77 E-value=9.6e-19 Score=168.26 Aligned_cols=160 Identities=18% Similarity=0.154 Sum_probs=112.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC--------ceeee--c------CCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ--------KLSIV--T------NKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~--------~~~~~--~------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 177 (348)
...+|+++|++|+|||||+++|++. .+... . ...+.|.......+...+..+.+|||||+.+
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~-- 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD-- 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG--
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH--
Confidence 3458999999999999999999873 11100 0 1234455554555666778999999999643
Q ss_pred hhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhh-HHH---HHHHHH
Q 018949 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGE-IAK---KLEWYE 252 (348)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~-~~~---~~~~~~ 252 (348)
+ ...+..++..+|++|+|+|++++...+...++..+.. .++| +++|+||+|+....+ .+. ....+.
T Consensus 88 f-------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~--~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l 158 (405)
T 2c78_A 88 Y-------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLL 158 (405)
T ss_dssp G-------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEECccccCcHHHHHHHHHHHHHHH
Confidence 2 2334556789999999999998877666666666665 5788 889999999985222 221 122222
Q ss_pred hcCC----CCeEEEecCCCCCC------------------HHHHHHHHHHhCCC
Q 018949 253 KFTD----VDEVIPVSAKYGHG------------------VEDIRDWILTKLPL 284 (348)
Q Consensus 253 ~~~~----~~~i~~vSA~~g~g------------------i~eL~~~i~~~l~~ 284 (348)
...+ ..+++++||++|.| +.+|++.|.+.++.
T Consensus 159 ~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp HHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred HHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 2222 36899999999987 88899999887764
No 154
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.77 E-value=1.7e-18 Score=172.94 Aligned_cols=158 Identities=26% Similarity=0.318 Sum_probs=105.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceee--------ecC------CCCceEEeEEEE--Ee---CCCeeEEEEeCCCCch
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--------VTN------KPQTTRHRILGI--CS---GPEYQMILYDTPGIIE 175 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~--------~~~------~~~~t~~~~~~~--~~---~~~~~~~l~DtpG~~~ 175 (348)
..+|+|+|++|+|||||+++|++..... ..+ ..+.|....... +. ...+.+++|||||+.+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 4489999999999999999997532111 001 112222211111 22 2247899999999754
Q ss_pred hhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcC
Q 018949 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT 255 (348)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~ 255 (348)
.. ..+..++..+|++|+|+|++++.+.+....+..... .++|+++|+||+|+.... .......+....
T Consensus 86 F~---------~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~--~~ipiIvviNKiDl~~a~-~~~v~~el~~~l 153 (600)
T 2ywe_A 86 FS---------YEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE--QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL 153 (600)
T ss_dssp GH---------HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH--TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS
T ss_pred HH---------HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--CCCCEEEEEeccCccccC-HHHHHHHHHHhh
Confidence 32 223445689999999999999886665555444444 689999999999998643 333445555544
Q ss_pred CCC--eEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 256 DVD--EVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 256 ~~~--~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
+.. +++++||++|.|+++|+++|.+.++.
T Consensus 154 g~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 154 GLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp CCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 442 58999999999999999999999875
No 155
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.77 E-value=1.3e-17 Score=145.15 Aligned_cols=165 Identities=23% Similarity=0.230 Sum_probs=103.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCc-eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhh-----hhhHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQK-LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKI-----HMLDSMMMK 187 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~-----~~l~~~~~~ 187 (348)
+..+|+++|++|||||||+|++++.. ...+.+++++|.......+. + .+.+|||||+..... .... ....
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~--~-~~~l~Dt~G~~~~~~~~~~~~~~~-~~~~ 100 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA--D-GKRLVDLPGYGYAEVPEEMKRKWQ-RALG 100 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEE--T-TEEEEECCCCC------CCHHHHH-HHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec--C-CEEEEECcCCcccccCHHHHHHHH-HHHH
Confidence 45589999999999999999999987 34445667776653322222 2 588999999743110 0111 1112
Q ss_pred HHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH----HHHHHHHhcCCCCeEEEe
Q 018949 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA----KKLEWYEKFTDVDEVIPV 263 (348)
Q Consensus 188 ~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~----~~~~~~~~~~~~~~i~~v 263 (348)
.+......++.+++|+|++.+.......+..++.. .+.|+++|.||+|+.+..+.. .....+........++++
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF 178 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEE
Confidence 23333467899999999988765544444444444 678999999999998754322 222233333334578999
Q ss_pred cCCCCCCHHHHHHHHHHhCCC
Q 018949 264 SAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 264 SA~~g~gi~eL~~~i~~~l~~ 284 (348)
||+++.|++++++.|.+.+..
T Consensus 179 Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 179 SSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp BTTTTBSHHHHHHHHHHHHC-
T ss_pred eecCCCCHHHHHHHHHHHHhh
Confidence 999999999999999987755
No 156
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.77 E-value=7.9e-18 Score=162.01 Aligned_cols=161 Identities=17% Similarity=0.194 Sum_probs=99.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee--ecCCCCceEEeEEE---EEe--------C----C--------CeeEEEE
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI--VTNKPQTTRHRILG---ICS--------G----P--------EYQMILY 168 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~--~~~~~~~t~~~~~~---~~~--------~----~--------~~~~~l~ 168 (348)
...+|+++|++++|||||+++|++..... ....++.|...... ... . . ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 34589999999999999999999754211 11223334322111 110 0 1 1679999
Q ss_pred eCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC-chHHHHHHHhcccccCCCCEEEEEeccCCCChhh----
Q 018949 169 DTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---- 243 (348)
Q Consensus 169 DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~---- 243 (348)
||||+ .. +...+...+..+|++|+|+|++++. ..+.......+... ...|+++|+||+|+.+...
T Consensus 87 DtPGh--~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l-~~~~iivv~NK~Dl~~~~~~~~~ 156 (408)
T 1s0u_A 87 DSPGH--ET-------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL-GIDKIIIVQNKIDLVDEKQAEEN 156 (408)
T ss_dssp ECSSH--HH-------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TCCCEEEEEECTTSSCTTTTTTH
T ss_pred ECCCH--HH-------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc-CCCeEEEEEEccCCCCHHHHHHH
Confidence 99994 22 2344556678899999999999875 44444444444432 2358999999999986432
Q ss_pred HHHHHHHHHhc-CCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 244 IAKKLEWYEKF-TDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 244 ~~~~~~~~~~~-~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
.++....+... ....+++++||++|.|+++|+++|.+.++.
T Consensus 157 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 157 YEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 22222222221 234589999999999999999999997764
No 157
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.77 E-value=2.3e-18 Score=172.19 Aligned_cols=158 Identities=23% Similarity=0.272 Sum_probs=101.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceee--------ec------CCCCceEEeEEEEEe-----CCCeeEEEEeCCCCch
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSI--------VT------NKPQTTRHRILGICS-----GPEYQMILYDTPGIIE 175 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~--------~~------~~~~~t~~~~~~~~~-----~~~~~~~l~DtpG~~~ 175 (348)
..+|+|+|++++|||||+++|+...... .. ...+.|.......+. ...+.+++|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 3489999999999999999998632111 00 112333332222222 2247899999999754
Q ss_pred hhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcC
Q 018949 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFT 255 (348)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~ 255 (348)
.. ..+..++..+|++|+|+|++++...+....+..... .++|+++|+||+|+.... .......+....
T Consensus 84 F~---------~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~--~~ipiIvViNKiDl~~a~-~~~v~~ei~~~l 151 (599)
T 3cb4_D 84 FS---------YEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--MDLEVVPVLNKIDLPAAD-PERVAEEIEDIV 151 (599)
T ss_dssp GH---------HHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH--TTCEEEEEEECTTSTTCC-HHHHHHHHHHHT
T ss_pred HH---------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEeeeccCccccc-HHHHHHHHHHHh
Confidence 22 224455778999999999998876655544444444 679999999999998643 222333444433
Q ss_pred CC--CeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 256 DV--DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 256 ~~--~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
+. .+++++||++|.|+++|+++|.+.++.
T Consensus 152 g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 152 GIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp CCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred CCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 33 358999999999999999999999875
No 158
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.76 E-value=1e-18 Score=173.95 Aligned_cols=161 Identities=20% Similarity=0.244 Sum_probs=99.3
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEE-E------EE----eCCCeeEEEEeCCCCchhhhhhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRIL-G------IC----SGPEYQMILYDTPGIIEKKIHML 181 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~-~------~~----~~~~~~~~l~DtpG~~~~~~~~l 181 (348)
.+..+|+++|.+|||||||+|++++.++.. ....|...... . .+ ...+..+.+||||| +..+..+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~--~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G--~e~~~~~ 114 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDP--KESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGG--QEIMHAS 114 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCS--CCTTTTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccceEEEEeccccccceeecCCCceEEEEEEECCc--HHHHHHH
Confidence 355699999999999999999999987541 12222211111 1 11 12357899999999 4444444
Q ss_pred HHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeE
Q 018949 182 DSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEV 260 (348)
Q Consensus 182 ~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i 260 (348)
...+ +..+|++|+|+|+++. ... ..+...+.....+.|+|+|+||+|+.....+ .+.........+ .++
T Consensus 115 ~~~~-------l~~~d~ii~V~D~s~~-~~~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~ 184 (535)
T 3dpu_A 115 HQFF-------MTRSSVYMLLLDSRTD-SNK-HYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIE-NRF 184 (535)
T ss_dssp CHHH-------HHSSEEEEEEECGGGG-GGH-HHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGT-TCE
T ss_pred HHHH-------ccCCcEEEEEEeCCCc-hhH-HHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcC-Cce
Confidence 3333 5679999999999764 333 3344444443457999999999999764332 112222222223 379
Q ss_pred EEecCCCCCCHHHHHHHHHHhCCCCCC
Q 018949 261 IPVSAKYGHGVEDIRDWILTKLPLGPA 287 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l~~~~~ 287 (348)
+++||++|.|+++|++.|.+.+...+.
T Consensus 185 ~~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 185 HRISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp EECCC-----CTTHHHHHHHHHTCTTS
T ss_pred EEEecCcccCHHHHHHHHHHHHhcccc
Confidence 999999999999999999998876544
No 159
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.76 E-value=9e-18 Score=161.05 Aligned_cols=158 Identities=18% Similarity=0.129 Sum_probs=111.3
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCce-------ee--------ecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKL-------SI--------VTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHM 180 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~-------~~--------~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 180 (348)
.+|+++|++|+|||||+++|++... .. .....+.|.......+..++..+.+|||||+.+
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~----- 78 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD----- 78 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH-----
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH-----
Confidence 4899999999999999999986310 00 011334555554445666778999999999532
Q ss_pred hHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhh-HH---HHHHHHHhcC
Q 018949 181 LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGE-IA---KKLEWYEKFT 255 (348)
Q Consensus 181 l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~-~~---~~~~~~~~~~ 255 (348)
+...+..++..+|++|+|+|++++...+....+..+.. .++| +++|+||+|+.+..+ .+ .....+....
T Consensus 79 ----f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 152 (397)
T 1d2e_A 79 ----YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEF 152 (397)
T ss_dssp ----HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHc
Confidence 23345667899999999999998876666665565555 6788 689999999985221 11 1122222222
Q ss_pred C----CCeEEEecCCCCCC----------HHHHHHHHHHhCCC
Q 018949 256 D----VDEVIPVSAKYGHG----------VEDIRDWILTKLPL 284 (348)
Q Consensus 256 ~----~~~i~~vSA~~g~g----------i~eL~~~i~~~l~~ 284 (348)
+ ..+++++||++|.| +.+|++.|.+.++.
T Consensus 153 ~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 153 GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred CCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 2 35899999999775 89999999998864
No 160
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.76 E-value=1.5e-19 Score=170.49 Aligned_cols=186 Identities=21% Similarity=0.314 Sum_probs=114.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC------CceeeecCCCCceE-------------------------------------
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTTR------------------------------------- 151 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~~t~------------------------------------- 151 (348)
...|+|+|+||||||||+|+|++ .+.......+.+..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~tr 153 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVTR 153 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------CT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccchH
Confidence 55899999999999999999985 33333333332221
Q ss_pred EeEEEE--EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCE
Q 018949 152 HRILGI--CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI 229 (348)
Q Consensus 152 ~~~~~~--~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ 229 (348)
.....+ +...+..+.++||||+.+.. . .....+|++++|+|++.+... ..+...+ ...|.
T Consensus 154 ~~~~~~~~~~~~~~~~iliDT~Gi~~~~-~-----------~l~~~~d~vl~V~d~~~~~~~--~~i~~~i----l~~~~ 215 (349)
T 2www_A 154 TTNEAILLCEGAGYDIILIETVGVGQSE-F-----------AVADMVDMFVLLLPPAGGDEL--QGIKRGI----IEMAD 215 (349)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCC--CH-H-----------HHHTTCSEEEEEECCC------------------CCSCS
T ss_pred HHHHHHHhhccCCCCEEEEECCCcchhh-h-----------hHHhhCCEEEEEEcCCcchhH--HHhHHHH----HhcCC
Confidence 000000 12356789999999975321 1 114689999999999765321 1111111 24688
Q ss_pred EEEEeccCCCChhhHHHHHHHH----HhcC-----CCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCC---
Q 018949 230 LLVLNKKDLIKPGEIAKKLEWY----EKFT-----DVDEVIPVSAKYGHGVEDIRDWILTKLPLGPAYYPKDIVSEH--- 297 (348)
Q Consensus 230 ivv~NK~Dl~~~~~~~~~~~~~----~~~~-----~~~~i~~vSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~--- 297 (348)
++|+||+|+.+..........+ .... ...+++++||++|.|+++|+++|.+.+.. .++....+..
T Consensus 216 ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~---~~~~~~~~~~R~~ 292 (349)
T 2www_A 216 LVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL---MLASGELTAKRRK 292 (349)
T ss_dssp EEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH---HHHHSHHHHHHHH
T ss_pred EEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH---HhhCchHHHHHHH
Confidence 9999999997543322222222 1111 13478999999999999999999887643 2222333332
Q ss_pred chHHHHHHHHHHHHHhhccCCCCc
Q 018949 298 PERFFVGEIIREKIFMQYRNEVPY 321 (348)
Q Consensus 298 ~~~~~~~e~ire~~~~~~~~eip~ 321 (348)
+.++++.+.++++++..+.+++|+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~ 316 (349)
T 2www_A 293 QQKVWMWNLIQESVLEHFRTHPTV 316 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcch
Confidence 566789999999999888888775
No 161
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.76 E-value=2e-19 Score=175.49 Aligned_cols=149 Identities=20% Similarity=0.251 Sum_probs=99.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCc--ee----------------------eecC------CCCceEEeEEEEEeCCCe
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQK--LS----------------------IVTN------KPQTTRHRILGICSGPEY 163 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~--~~----------------------~~~~------~~~~t~~~~~~~~~~~~~ 163 (348)
...+|+++|++|+|||||+|+|++.. +. .+.+ ..+.|.......+...+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 34589999999999999999998641 00 0001 245555554455677788
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCch-------HHHHHHHhcccccCCCC-EEEEEec
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPER-------IDEILEEGVGDHKDKLP-ILLVLNK 235 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~-------~~~~~~~~~~~~~~~~p-~ivv~NK 235 (348)
.+.+|||||+.+ +...+..++..+|++|+|+|++++... +.......+.. .++| +|+|+||
T Consensus 86 ~~~iiDtPGh~~---------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK 154 (458)
T 1f60_A 86 QVTVIDAPGHRD---------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNK 154 (458)
T ss_dssp EEEEEECCCCTT---------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEEC
T ss_pred eEEEEECCCcHH---------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEc
Confidence 999999999532 234456678999999999999865422 33334444444 5666 8999999
Q ss_pred cCCCC--hhhHHHHHHHHH---hcCC----CCeEEEecCCCCCCHHH
Q 018949 236 KDLIK--PGEIAKKLEWYE---KFTD----VDEVIPVSAKYGHGVED 273 (348)
Q Consensus 236 ~Dl~~--~~~~~~~~~~~~---~~~~----~~~i~~vSA~~g~gi~e 273 (348)
+|+.+ ..........+. ...+ ..+++++||++|.|+.+
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 99983 322222222221 2222 25899999999999874
No 162
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.75 E-value=5.3e-19 Score=167.15 Aligned_cols=184 Identities=19% Similarity=0.235 Sum_probs=115.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCceEEe-----------------EEEE-------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHR-----------------ILGI------------- 157 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t~~~-----------------~~~~------------- 157 (348)
+..+|+++|.+|+|||||+++|. |.++..+...+.++... ...+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 45589999999999999999985 44444444333333200 0000
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC
Q 018949 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (348)
Q Consensus 158 ---------~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p 228 (348)
+...+..+.+|||||+.+... ..+..+|++++|+|+....... .+ .....+.|
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~------------~~~~~aD~vl~V~d~~~~~~~~--~l----~~~~~~~p 219 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQSEV------------AVANMVDTFVLLTLARTGDQLQ--GI----KKGVLELA 219 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSHHH------------HHHTTCSEEEEEEESSTTCTTT--TC----CTTSGGGC
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcHHH------------HHHHhCCEEEEEECCCCCccHH--HH----HHhHhhcC
Confidence 123567899999999754211 1247999999999986543221 11 11113469
Q ss_pred EEEEEeccCCCChhhHHHHHHHHHhc----C----C-CCeEEEecCCCCCCHHHHHHHHHHhCCC--CCCCCCCcccCCC
Q 018949 229 ILLVLNKKDLIKPGEIAKKLEWYEKF----T----D-VDEVIPVSAKYGHGVEDIRDWILTKLPL--GPAYYPKDIVSEH 297 (348)
Q Consensus 229 ~ivv~NK~Dl~~~~~~~~~~~~~~~~----~----~-~~~i~~vSA~~g~gi~eL~~~i~~~l~~--~~~~~~~~~~~~~ 297 (348)
+++|+||+|+.+..........+... . + ..+++++||++|.|+++|+++|.+.+.. .+..++. ....
T Consensus 220 ~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~~~~~~~~~--~r~~ 297 (355)
T 3p32_A 220 DIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVLTGAGEFDA--RRRD 297 (355)
T ss_dssp SEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHHHHTTHHHH--HHHH
T ss_pred CEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHhhcCchHHH--HHHH
Confidence 99999999997654443333333221 1 1 2589999999999999999999987753 2222222 1122
Q ss_pred chHHHHHHHHHHHHHhhccC
Q 018949 298 PERFFVGEIIREKIFMQYRN 317 (348)
Q Consensus 298 ~~~~~~~e~ire~~~~~~~~ 317 (348)
...+++.+.++++++..+.+
T Consensus 298 ~~~~~~~e~i~e~l~~~~~~ 317 (355)
T 3p32_A 298 QQVDWTWQLVRDAVLDRVWS 317 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35567889999998876654
No 163
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.75 E-value=2.9e-18 Score=168.50 Aligned_cols=151 Identities=19% Similarity=0.133 Sum_probs=101.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCcee------------------------------eecCCCCceEEeEEEEEeCCCe
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS------------------------------IVTNKPQTTRHRILGICSGPEY 163 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~ 163 (348)
...+|+++|++|+|||||+|+|++.... ......+.|.+.....+...+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 3458999999999999999999754111 1122345666666666777889
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCC-------CchHHHHHHHhcccccCCCCEEEEEecc
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKLPILLVLNKK 236 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~-------~~~~~~~~~~~~~~~~~~~p~ivv~NK~ 236 (348)
.+.+|||||+.+ +...+..++..+|++|+|+|++++ ...+.......+... ...|+|+|+||+
T Consensus 112 ~~~iiDTPG~~~---------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~ 181 (483)
T 3p26_A 112 NFTIVDAPGHRD---------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKM 181 (483)
T ss_dssp EEEEECCCCCGG---------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECG
T ss_pred eEEEEECCCcHH---------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECc
Confidence 999999999633 223455667899999999999886 334455555555442 235699999999
Q ss_pred CCCCh--hhHHHHHHHHHh----cC---CCCeEEEecCCCCCCHHHH
Q 018949 237 DLIKP--GEIAKKLEWYEK----FT---DVDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 237 Dl~~~--~~~~~~~~~~~~----~~---~~~~i~~vSA~~g~gi~eL 274 (348)
|+.+. ...++....+.. .. ...+++++||++|.|++++
T Consensus 182 Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 182 DNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred CcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 99862 222222222221 11 1358999999999999864
No 164
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.75 E-value=7.1e-20 Score=179.25 Aligned_cols=156 Identities=20% Similarity=0.272 Sum_probs=108.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
|.++|+++|++++|||||+++|.+..+. ....++.|.+.....+..++..+.+|||||+. .+..+ ....+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe--~f~~~-------~~~~~ 72 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGHA--AFTSM-------RARGA 72 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTT--CCTTS-------BCSSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCcH--HHHHH-------HHHHH
Confidence 6679999999999999999999876543 23334555544333455567789999999953 33332 22447
Q ss_pred cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh--hHHHHHHH---H-HhcCCCCeEEEecCCC
Q 018949 194 INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG--EIAKKLEW---Y-EKFTDVDEVIPVSAKY 267 (348)
Q Consensus 194 ~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~---~-~~~~~~~~i~~vSA~~ 267 (348)
..+|++++|+|++++...+....+..+.. .++|+++|+||+|+.... .+...+.. + ....+..+++++||++
T Consensus 73 ~~aD~aILVVda~~g~~~qT~e~l~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAkt 150 (501)
T 1zo1_I 73 QATDIVVLVVAADDGVMPQTIEAIQHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKA 150 (501)
T ss_dssp BSCSSEEEEEETTTBSCTTTHHHHHHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTT
T ss_pred hhCCEEEEEeecccCccHHHHHHHHHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeee
Confidence 88999999999988765555555555555 679999999999997532 11100000 0 0111235899999999
Q ss_pred CCCHHHHHHHHHHh
Q 018949 268 GHGVEDIRDWILTK 281 (348)
Q Consensus 268 g~gi~eL~~~i~~~ 281 (348)
|.|+++|+++|...
T Consensus 151 G~gI~eLle~I~~~ 164 (501)
T 1zo1_I 151 GTGIDELLDAILLQ 164 (501)
T ss_dssp CTTCTTHHHHTTTT
T ss_pred ccCcchhhhhhhhh
Confidence 99999999998754
No 165
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.74 E-value=1.8e-17 Score=160.73 Aligned_cols=148 Identities=21% Similarity=0.183 Sum_probs=98.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceee----------ecCCCC----------------------ceEEeEEEEEeCCCe
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSI----------VTNKPQ----------------------TTRHRILGICSGPEY 163 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~----------~~~~~~----------------------~t~~~~~~~~~~~~~ 163 (348)
.+|+++|++|+|||||+++|++..... .+..++ .|.......+..++.
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~ 104 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKR 104 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSE
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCc
Confidence 489999999999999999998654211 111222 233333344566778
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCC-CEEEEEeccCCCCh-
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-PILLVLNKKDLIKP- 241 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~-p~ivv~NK~Dl~~~- 241 (348)
.+.+|||||+.+ +. ..+..++..+|++|+|+|++++...+...+...+.. .+. |+|+|+||+|+.+.
T Consensus 105 ~~~iiDtpGh~~--f~-------~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~--~~~~~iIvviNK~Dl~~~~ 173 (434)
T 1zun_B 105 KFIIADTPGHEQ--YT-------RNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL--LGIKHIVVAINKMDLNGFD 173 (434)
T ss_dssp EEEEEECCCSGG--GH-------HHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEEECTTTTTSC
T ss_pred eEEEEECCChHH--HH-------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEEcCcCCccc
Confidence 899999999643 22 223345789999999999998876666555555554 344 59999999999862
Q ss_pred -hhHH---HHHHHHHhcCC----CCeEEEecCCCCCCHHHH
Q 018949 242 -GEIA---KKLEWYEKFTD----VDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 242 -~~~~---~~~~~~~~~~~----~~~i~~vSA~~g~gi~eL 274 (348)
.... .....+....+ ..+++++||++|.|++++
T Consensus 174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 2222 22222222333 257999999999999874
No 166
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.74 E-value=2.7e-18 Score=171.82 Aligned_cols=158 Identities=21% Similarity=0.245 Sum_probs=105.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEe------------------CCCeeEEEEeCCCCch
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICS------------------GPEYQMILYDTPGIIE 175 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~------------------~~~~~~~l~DtpG~~~ 175 (348)
+.++|+++|++|+|||||+++|++..+... ...+.|.+.....+. .....+.+|||||+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~-e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe- 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASR-EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE- 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS-
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccc-cCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH-
Confidence 667999999999999999999997654311 111222221111111 112259999999964
Q ss_pred hhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh-------------
Q 018949 176 KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG------------- 242 (348)
Q Consensus 176 ~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~------------- 242 (348)
.+..+ ...++..+|++|+|+|++++...+....+..++. .++|+++|+||+|+....
T Consensus 82 -~F~~~-------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa 151 (594)
T 1g7s_A 82 -AFTTL-------RKRGGALADLAILIVDINEGFKPQTQEALNILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFS 151 (594)
T ss_dssp -CCTTS-------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHT
T ss_pred -HHHHH-------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHH--cCCeEEEEecccccccccccccCCchHHHHH
Confidence 33332 1234678999999999999887776666666666 789999999999996421
Q ss_pred ----hH----H----HHHHHHHhc-------------CCCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 243 ----EI----A----KKLEWYEKF-------------TDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 243 ----~~----~----~~~~~~~~~-------------~~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
.+ . +....+... ....+++++||++|.|+++|+++|...++
T Consensus 152 ~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 152 KQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 11 1 111222211 22348999999999999999999987654
No 167
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.73 E-value=5e-18 Score=173.34 Aligned_cols=162 Identities=22% Similarity=0.214 Sum_probs=109.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCc--------------eEEeEEE----E---------EeCCC----
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQT--------------TRHRILG----I---------CSGPE---- 162 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~--------------t~~~~~~----~---------~~~~~---- 162 (348)
...+|+|+|.+|+|||||+|+|+|.++.+++..|+| |.....+ . +...+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 345899999999999999999999988777777766 2211000 0 00000
Q ss_pred --------------------------eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHH-
Q 018949 163 --------------------------YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI- 215 (348)
Q Consensus 163 --------------------------~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~- 215 (348)
..+.+|||||+.+.. . ....+..++..+|++|||+|++++.......
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~--~----~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~ 221 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE--A----RNELSLGYVNNCHAILFVMRASQPCTLGERRY 221 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH--T----CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh--h----HHHHHHHHHHhCCEEEEEEeCCCccchhHHHH
Confidence 369999999975422 1 1234556778999999999998876554433
Q ss_pred HHHhcccccCCCCEEEEEeccCCCChh--------hHHH----HH----HHHHhcC-------CCCeEEEecCC------
Q 018949 216 LEEGVGDHKDKLPILLVLNKKDLIKPG--------EIAK----KL----EWYEKFT-------DVDEVIPVSAK------ 266 (348)
Q Consensus 216 ~~~~~~~~~~~~p~ivv~NK~Dl~~~~--------~~~~----~~----~~~~~~~-------~~~~i~~vSA~------ 266 (348)
+...+.. .+.|+++|+||+|+.... .+.. .. ..+.... ...++++|||+
T Consensus 222 l~~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~ 299 (695)
T 2j69_A 222 LENYIKG--RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRR 299 (695)
T ss_dssp HHHHTTT--SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHH
T ss_pred HHHHHHh--hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhh
Confidence 3344544 578999999999986542 1111 11 1122221 12379999999
Q ss_pred --------CCCCHHHHHHHHHHhCC
Q 018949 267 --------YGHGVEDIRDWILTKLP 283 (348)
Q Consensus 267 --------~g~gi~eL~~~i~~~l~ 283 (348)
+|.|+++|++.+.+.+.
T Consensus 300 ~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 300 LKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred ccCchhhhhccCHHHHHHHHHHHHH
Confidence 99999999999988663
No 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.73 E-value=1.9e-17 Score=143.24 Aligned_cols=158 Identities=20% Similarity=0.204 Sum_probs=100.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCC--CeeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGP--EYQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|++|||||||++++.+..+.... .+..+.......+..+ ...+.+|||||. ..+..+.. .+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~-~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~--~~~~~~~~-------~~ 74 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDGKTIKAQIWDTAGQ--ERYRRITS-------AY 74 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSG--GGTTCCCH-------HH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCccceeEEEEEEEECCEEEEEEEEECCCc--hhhhhhhH-------HH
Confidence 348999999999999999999998764322 2222222222333333 357889999994 33333222 23
Q ss_pred ccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..++++++|+|.+.... ....++.........+.|+++|+||+|+...... ......+....+ ..++.+||+++.
T Consensus 75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~-~~~~d~Sal~~~ 153 (199)
T 2f9l_A 75 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNN-LSFIETSALDST 153 (199)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECCTTTCT
T ss_pred HhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence 568899999999976432 2222332222211256899999999999643211 111223333333 378999999999
Q ss_pred CHHHHHHHHHHhCC
Q 018949 270 GVEDIRDWILTKLP 283 (348)
Q Consensus 270 gi~eL~~~i~~~l~ 283 (348)
|++++++.|.+.+.
T Consensus 154 ~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 154 NVEEAFKNILTEIY 167 (199)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987663
No 169
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.73 E-value=4.7e-17 Score=161.05 Aligned_cols=117 Identities=22% Similarity=0.253 Sum_probs=83.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee---------------ec------CCCCceEEeEEEEEeCCCeeEEEEeCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI---------------VT------NKPQTTRHRILGICSGPEYQMILYDTPG 172 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~---------------~~------~~~~~t~~~~~~~~~~~~~~~~l~DtpG 172 (348)
+..+|+|+|++|+|||||+++|++..... +. ...+.|.......+.+++..+++|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 34589999999999999999998632111 00 1222333333334566788999999999
Q ss_pred CchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
+.+. . ..+..++..+|++|+|+|++++.......+...+.. .++|+++|+||+|+...
T Consensus 92 ~~df--~-------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~--~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 92 HEDF--S-------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL--RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp STTC--C-------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT--TTCCEEEEEECTTSCCS
T ss_pred ChhH--H-------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH--cCCCEEEEEcCcCCccc
Confidence 6432 2 234566889999999999999887777777777666 68999999999999754
No 170
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.73 E-value=1.9e-18 Score=155.97 Aligned_cols=167 Identities=15% Similarity=0.147 Sum_probs=97.9
Q ss_pred CCccEEEEEcCC---------CCChHHHHHHHhCC---ceeeecCCCCce--EEeEE----------------EEEeCCC
Q 018949 113 HKSGYVAVLGKP---------NVGKSTLANQMIGQ---KLSIVTNKPQTT--RHRIL----------------GICSGPE 162 (348)
Q Consensus 113 ~~~~~v~i~G~~---------~~GKSsLin~l~~~---~~~~~~~~~~~t--~~~~~----------------~~~~~~~ 162 (348)
.+..+|+++|.+ |||||||+|++++. .+. .....+| ..... ..++...
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~--~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFH--LDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCC--SCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccc--cccCCcccccccceeEeecccccccccccccccCCcE
Confidence 345699999999 99999999999984 332 2222222 11000 0023345
Q ss_pred eeEEEEe------CCCCchhhhhhhHHHHHH--------HHHhhcc---------------------CccEEEEEecCCC
Q 018949 163 YQMILYD------TPGIIEKKIHMLDSMMMK--------NVRSAGI---------------------NADCIVVLVDACK 207 (348)
Q Consensus 163 ~~~~l~D------tpG~~~~~~~~l~~~~~~--------~~~~~~~---------------------~ad~iv~VvD~~~ 207 (348)
..+.+|| |||........+...+.. ....++. .||++|+|+|+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 6788888 666533222111111000 0011122 6999999999987
Q ss_pred C--C--chHHHHHHHhccc-ccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 208 A--P--ERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 208 ~--~--~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
. . .....++...... ...+.|+++|+||+|+.....+.+ ...+.......+++++||++|.|+++++++|.+.+
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~-~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRD-AHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHH-HHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHH-HHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5 2 3333444333322 125799999999999987655533 33333332234899999999999999999998754
No 171
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.72 E-value=1.9e-17 Score=160.55 Aligned_cols=150 Identities=21% Similarity=0.244 Sum_probs=96.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeee------------------------------cCCCCceEEeEEEEEeCCCe
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV------------------------------TNKPQTTRHRILGICSGPEY 163 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~ 163 (348)
...+|+++|++|+|||||+++|++...... ....++|.......+...+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 345899999999999999999986421100 01345566655555677788
Q ss_pred eEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCC-------CchHHHHHHHhcccccCCC-CEEEEEec
Q 018949 164 QMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA-------PERIDEILEEGVGDHKDKL-PILLVLNK 235 (348)
Q Consensus 164 ~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~-------~~~~~~~~~~~~~~~~~~~-p~ivv~NK 235 (348)
.+.+|||||+.+ + ...+..++..+|++|+|+|++++ ...+.......+.. .+. |+++|+||
T Consensus 85 ~~~iiDtpG~~~--f-------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~--~~~~~iivviNK 153 (435)
T 1jny_A 85 FFTIIDAPGHRD--F-------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT--MGLDQLIVAVNK 153 (435)
T ss_dssp EEEECCCSSSTT--H-------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH--TTCTTCEEEEEC
T ss_pred EEEEEECCCcHH--H-------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeEEEEEEc
Confidence 999999999643 2 23355678999999999999986 43444555444444 344 68999999
Q ss_pred cCCCCh----hhHH---HHHHHHHhcCC----CCeEEEecCCCCCCHHHH
Q 018949 236 KDLIKP----GEIA---KKLEWYEKFTD----VDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 236 ~Dl~~~----~~~~---~~~~~~~~~~~----~~~i~~vSA~~g~gi~eL 274 (348)
+|+.+. .... +....+....+ ..+++++||++|.|+.++
T Consensus 154 ~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 154 MDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp GGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 999862 2112 22222222222 258999999999999754
No 172
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.71 E-value=1.2e-17 Score=160.35 Aligned_cols=162 Identities=25% Similarity=0.321 Sum_probs=113.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-eeEEEEeCCCCchhhh--hhhHHHHHHHHHhhc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-YQMILYDTPGIIEKKI--HMLDSMMMKNVRSAG 193 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~--~~l~~~~~~~~~~~~ 193 (348)
.|+|+|++|||||||+++|++.... +..++.+|.....+.+...+ ..+.++||||+.+... ..+... +...+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~-i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~----fl~~~ 233 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPK-IAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLE----FLRHI 233 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCE-ECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHH----HHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHcCCcc-ccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHH----HHHHH
Confidence 6999999999999999999998764 56778888777777777664 7899999999854221 122222 23345
Q ss_pred cCccEEEEEecCC-CCCchHHHHHHH---hcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 194 INADCIVVLVDAC-KAPERIDEILEE---GVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 194 ~~ad~iv~VvD~~-~~~~~~~~~~~~---~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
..++.+++|+|++ .+.........+ +...+ ...|.++|+||+|+............+.. .+ .+++.+||++++
T Consensus 234 era~~lL~vvDls~~~~~~ls~g~~el~~la~aL-~~~P~ILVlNKlDl~~~~~~~~l~~~l~~-~g-~~vi~iSA~~g~ 310 (416)
T 1udx_A 234 ARTRVLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLLEEEAVKALADALAR-EG-LAVLPVSALTGA 310 (416)
T ss_dssp TSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTSCHHHHHHHHHHHHT-TT-SCEEECCTTTCT
T ss_pred HHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHh-hcCCEEEEEECCChhhHHHHHHHHHHHHh-cC-CeEEEEECCCcc
Confidence 7899999999997 222222222111 11111 35899999999999876333333333332 22 379999999999
Q ss_pred CHHHHHHHHHHhCCCCC
Q 018949 270 GVEDIRDWILTKLPLGP 286 (348)
Q Consensus 270 gi~eL~~~i~~~l~~~~ 286 (348)
|+++|+++|.+.+...+
T Consensus 311 gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 311 GLPALKEALHALVRSTP 327 (416)
T ss_dssp THHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999886543
No 173
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.71 E-value=6.5e-17 Score=160.70 Aligned_cols=117 Identities=19% Similarity=0.200 Sum_probs=87.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCcee---------------eecCC------CCceEEeEEEEEeCCCeeEEEEeCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS---------------IVTNK------PQTTRHRILGICSGPEYQMILYDTPG 172 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~---------------~~~~~------~~~t~~~~~~~~~~~~~~~~l~DtpG 172 (348)
|..+|+|+|+.++|||||..+|+..... .+++. .+.|.......+.++++.++|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 4458999999999999999998622111 01111 12233333344678899999999999
Q ss_pred CchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 173 IIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 173 ~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
+.+.. ..+.+.++-+|++|+|||+..+.+.+.+.+++.+.. .++|.++++||+|....
T Consensus 110 HvDF~---------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~--~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 110 HQDFS---------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM--RATPVMTFVNKMDREAL 167 (548)
T ss_dssp GGGCS---------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECTTSCCC
T ss_pred cHHHH---------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH--hCCceEEEEecccchhc
Confidence 87654 335566789999999999999999999999988888 89999999999998754
No 174
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.71 E-value=4.7e-18 Score=159.76 Aligned_cols=184 Identities=19% Similarity=0.302 Sum_probs=114.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCceEEe--------------------EEEE----------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHR--------------------ILGI---------- 157 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t~~~--------------------~~~~---------- 157 (348)
+...|+++|++|+|||||+|.|. +.+...+...+.++... ....
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~ 134 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 134 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhH
Confidence 44589999999999999999996 44555555445443210 0000
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC
Q 018949 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (348)
Q Consensus 158 ---------~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p 228 (348)
+...+.++.++||||+.+.... ....+|++++|+|++.+... ..++....+.|
T Consensus 135 ~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~------------~~~~aD~vl~Vvd~~~~~~~------~~l~~~~~~~p 196 (341)
T 2p67_A 135 QRARELMLLCEAAGYDVVIVETVGVGQSETE------------VARMVDCFISLQIAGGGDDL------QGIKKGLMEVA 196 (341)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTHHHH------------HHTTCSEEEEEECC------------CCCCHHHHHHC
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCccchHHH------------HHHhCCEEEEEEeCCccHHH------HHHHHhhhccc
Confidence 0134678999999998653210 14799999999999754210 11110002468
Q ss_pred EEEEEeccCCCChhhHHHHHHHHHh----cCC-----CCeEEEecCCCCCCHHHHHHHHHHhCC---CCCCCCCCcccCC
Q 018949 229 ILLVLNKKDLIKPGEIAKKLEWYEK----FTD-----VDEVIPVSAKYGHGVEDIRDWILTKLP---LGPAYYPKDIVSE 296 (348)
Q Consensus 229 ~ivv~NK~Dl~~~~~~~~~~~~~~~----~~~-----~~~i~~vSA~~g~gi~eL~~~i~~~l~---~~~~~~~~~~~~~ 296 (348)
.++|+||+|+............+.. ... ..+++++||++|.|+++|+++|.+.+. .. ..+|. .. .
T Consensus 197 ~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~~-~~~~~-~r-~ 273 (341)
T 2p67_A 197 DLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTAS-GRLQQ-VR-Q 273 (341)
T ss_dssp SEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHHT-THHHH-HH-H
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHhC-ChHHH-HH-H
Confidence 8999999999875444332222221 111 347899999999999999999988664 21 12221 11 1
Q ss_pred CchHHHHHHHHHHHHHhhccCC
Q 018949 297 HPERFFVGEIIREKIFMQYRNE 318 (348)
Q Consensus 297 ~~~~~~~~e~ire~~~~~~~~e 318 (348)
...++++.|.+++++++.+.++
T Consensus 274 ~~~~~~~~e~i~e~l~~~~~~~ 295 (341)
T 2p67_A 274 QQSVEWLRKQTEEEVLNHLFAN 295 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 2355678888999999888765
No 175
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.71 E-value=7.5e-17 Score=164.57 Aligned_cols=117 Identities=18% Similarity=0.211 Sum_probs=81.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-----------ecC------CCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+..+|+|+|++|+|||||+++|+...... +.+ ..+.|.......+.+.+..+++|||||+.+.
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 45589999999999999999998321110 011 2234444444455667889999999996432
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
. ..+..++..+|++|+|+|++.+.......++..+.. .++|+++|+||+|+...
T Consensus 91 --~-------~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~--~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 91 --T-------IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp --H-------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECTTSTTC
T ss_pred --H-------HHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECCCcccC
Confidence 1 234455788999999999998887766666655555 68999999999999753
No 176
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.71 E-value=9e-17 Score=168.18 Aligned_cols=161 Identities=17% Similarity=0.165 Sum_probs=109.0
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCCce-------e--------eecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQKL-------S--------IVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK 177 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~~~-------~--------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 177 (348)
....+|+++|++|+|||||+++|++... . ......+.|.......+..++..+.+|||||+. .
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe--d 371 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA--D 371 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH--H
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH--H
Confidence 3456899999999999999999986410 0 001233444444334456677899999999953 2
Q ss_pred hhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCCCChhh-HH---HHHHHHH
Q 018949 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDLIKPGE-IA---KKLEWYE 252 (348)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~~~-~~---~~~~~~~ 252 (348)
+...+..++..+|++|+|+|++++...+...++..+.. .++| +|+|+||+|+.+..+ .+ .....+.
T Consensus 372 -------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~--lgIP~IIVVINKiDLv~d~e~le~i~eEi~elL 442 (1289)
T 3avx_A 372 -------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQ--VGVPYIIVFLNKCDMVDDEELLELVEMEVRELL 442 (1289)
T ss_dssp -------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHH--HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHH--cCCCeEEEEEeecccccchhhHHHHHHHHHHHH
Confidence 23445667899999999999998876666555555555 5788 789999999986322 11 1222222
Q ss_pred hcCC----CCeEEEecCCCC--------CCHHHHHHHHHHhCCC
Q 018949 253 KFTD----VDEVIPVSAKYG--------HGVEDIRDWILTKLPL 284 (348)
Q Consensus 253 ~~~~----~~~i~~vSA~~g--------~gi~eL~~~i~~~l~~ 284 (348)
...+ ..+++++||++| .|+++|++.|.+.++.
T Consensus 443 k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 443 SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 2222 358999999999 5799999999988764
No 177
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.71 E-value=4.8e-17 Score=150.49 Aligned_cols=159 Identities=14% Similarity=0.078 Sum_probs=100.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINA 196 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~a 196 (348)
||+++|..|||||||++++.+..........+.|.......+. ....+.+||||| ++.+... .+ ....+++.+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAG--QErf~~~--~l--~~~~yyr~a 73 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPG--QLNYFEP--SY--DSERLFKSV 73 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCS--CSSSCCC--SH--HHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCC--chhccch--hh--hhhhhccCC
Confidence 5899999999999999988765432111122222221111222 347899999999 5444210 00 123457899
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcc---cccCCCCEEEEEeccCCCChhhH-------HH-HHHHHHhcC---CCCeEEE
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVG---DHKDKLPILLVLNKKDLIKPGEI-------AK-KLEWYEKFT---DVDEVIP 262 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~---~~~~~~p~ivv~NK~Dl~~~~~~-------~~-~~~~~~~~~---~~~~i~~ 262 (348)
+++|+|+|+++.......++..++. ...++.|+++|+||+|+...... .. ....+.+.. ...++++
T Consensus 74 ~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e 153 (331)
T 3r7w_B 74 GALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL 153 (331)
T ss_dssp SEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred CEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence 9999999998764344444433322 22368999999999999865331 11 112222221 2347899
Q ss_pred ecCCCCCCHHHHHHHHHHhCC
Q 018949 263 VSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 263 vSA~~g~gi~eL~~~i~~~l~ 283 (348)
+||++ .||.+.|..|.+.+.
T Consensus 154 TSAkd-~nV~eAFs~iv~~li 173 (331)
T 3r7w_B 154 TSIFD-HSIYEAFSRIVQKLI 173 (331)
T ss_dssp CCSSS-SHHHHHHHHHHTTSS
T ss_pred eccCC-CcHHHHHHHHHHHHH
Confidence 99998 599999999987764
No 178
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.5e-17 Score=153.94 Aligned_cols=119 Identities=24% Similarity=0.326 Sum_probs=87.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGIN 195 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ 195 (348)
.+|+|+|.||||||||+|+|++.+.. ++++|+||+++..+++...+.++.++||||+...... .......++..++.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~-v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~--~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESE-AAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKD--GRGRGKQVIAVART 149 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCC-GGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-------CHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCc-ccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchh--hhHHHHHHHHHHHh
Confidence 38999999999999999999998744 7899999999999999999999999999999764322 22233556677899
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccc---cCCCCEEEEEeccCC
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDH---KDKLPILLVLNKKDL 238 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~NK~Dl 238 (348)
||++++|+|++++..... .+...+... ....|.++++||+|.
T Consensus 150 ad~il~vvD~~~p~~~~~-~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQ-IIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp CSEEEEEEETTSHHHHHH-HHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred cCccccccccCccHHHHH-HHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 999999999987543322 111111110 134566677777774
No 179
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.70 E-value=8.1e-17 Score=164.38 Aligned_cols=117 Identities=18% Similarity=0.187 Sum_probs=82.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-----------ecC------CCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+..+|+|+|++|+|||||+|+|++..... +.+ .+++|.......+.+++..+++|||||+.+.
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 45689999999999999999998421110 111 2344444444556667889999999997542
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
. ..+..++..+|++|+|+|++++.......++..+.. .++|+++|+||+|+...
T Consensus 89 ~---------~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~--~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 89 T---------VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT--YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp C---------HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECTTSTTC
T ss_pred H---------HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHH--cCCCEEEEEECCCcccc
Confidence 2 223455678999999999998887766666666655 68999999999999754
No 180
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.69 E-value=2.3e-16 Score=160.41 Aligned_cols=115 Identities=23% Similarity=0.163 Sum_probs=83.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-----------ecC------CCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+..+|+|+|++|+|||||+++|++..... ..+ ..+.|.......+......+++|||||+.+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~- 86 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD- 86 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG-
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc-
Confidence 44589999999999999999998432210 000 113343344445556678999999999643
Q ss_pred hhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 177 KIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 177 ~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
+. ..+..++..+|++++|+|++.+.......++..+.. .++|+++|+||+|+.
T Consensus 87 -f~-------~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 -FV-------GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp -GH-------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECGGGC
T ss_pred -hH-------HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHH--ccCCEEEEecCCchh
Confidence 21 234455788999999999998887777777776666 689999999999987
No 181
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.69 E-value=4.8e-16 Score=158.84 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=81.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceee-----------ecC------CCCceEEeEEEEEeCCC-------eeEEEEe
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSI-----------VTN------KPQTTRHRILGICSGPE-------YQMILYD 169 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~-------~~~~l~D 169 (348)
+..+|+|+|++|+|||||+++|+...... ..+ ..+.|.......+.+.+ ..+++||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 44589999999999999999997532110 111 12334433333344444 8899999
Q ss_pred CCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCCh
Q 018949 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKP 241 (348)
Q Consensus 170 tpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 241 (348)
|||+.+. ...+..++..+|++|+|+|++.+...+...++..+.. .++|+++|+||+|+...
T Consensus 89 TPG~~df---------~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~--~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 89 TPGHVDF---------TIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANK--YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred CCCccch---------HHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCEEEEEeCCCcccc
Confidence 9996432 1234456788999999999998877666666665555 68999999999998753
No 182
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=3.9e-17 Score=143.01 Aligned_cols=144 Identities=17% Similarity=0.223 Sum_probs=84.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeee--cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+.++|+++|++|+|||||+++|.+..+... +..+.++. ......+.+|||||+. .+......+ +..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~--~~~~~~~~~---~~~ 78 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGHV--KLRYKLSDY---LKT 78 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET-------TGGGSSCEEEECCCCG--GGTHHHHHH---HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE-------EeeCceEEEEECCCcH--HHHHHHHHH---HHh
Confidence 456999999999999999999998765321 11111111 1245679999999963 333222222 222
Q ss_pred hccCccEEEEEecCC---CCCchHHHHHHHhccc----ccCCCCEEEEEeccCCCChhhHHH-------HHHHHHhcCCC
Q 018949 192 AGINADCIVVLVDAC---KAPERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPGEIAK-------KLEWYEKFTDV 257 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~---~~~~~~~~~~~~~~~~----~~~~~p~ivv~NK~Dl~~~~~~~~-------~~~~~~~~~~~ 257 (348)
....+|++|+|+|++ ........++...+.. ...+.|+++|+||+|+........ ....+....+
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~- 157 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK- 157 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh-
Confidence 234589999999998 3445555555555432 125799999999999986543321 1222222212
Q ss_pred CeEEEecCCCCCC
Q 018949 258 DEVIPVSAKYGHG 270 (348)
Q Consensus 258 ~~i~~vSA~~g~g 270 (348)
.+++++||++|.+
T Consensus 158 ~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 158 KSLNEVERKINEE 170 (218)
T ss_dssp HHHHC--------
T ss_pred ccccccccccccc
Confidence 3678999998864
No 183
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.69 E-value=1.5e-16 Score=136.80 Aligned_cols=157 Identities=20% Similarity=0.193 Sum_probs=100.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhhhhhHHHHHHHHHhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKIHMLDSMMMKNVRSA 192 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~ 192 (348)
..+|+++|++|||||||++++.+..+... ..+..+.......+..++ ..+.+|||||... +..+ +..+
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~-~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~--~~~~-------~~~~ 98 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE-SKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER--YRAI-------TSAY 98 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCS-CCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS--SSCC-------CHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceEEEEEEEEECCEEEEEEEEECCCCcc--hhhh-------hHHH
Confidence 45899999999999999999998776432 223233333333333343 4567799999532 2222 1233
Q ss_pred ccCccEEEEEecCCCCCc--hHHHHHHHhcccccCCCCEEEEEeccCCCChhhH-HHHHHHHHhcCCCCeEEEecCCCCC
Q 018949 193 GINADCIVVLVDACKAPE--RIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI-AKKLEWYEKFTDVDEVIPVSAKYGH 269 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~i~~vSA~~g~ 269 (348)
+..++++++|+|.+.... ....++.........+.|+++|+||+|+...... ......+....+ ..++.+||+++.
T Consensus 99 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~-~~~ld~Sald~~ 177 (191)
T 1oix_A 99 YRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNG-LSFIETSALDST 177 (191)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECCTTTCT
T ss_pred hhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 578899999999876432 2222322222111256899999999998643211 112233333333 378999999999
Q ss_pred CHHHHHHHHHHhC
Q 018949 270 GVEDIRDWILTKL 282 (348)
Q Consensus 270 gi~eL~~~i~~~l 282 (348)
|++++++.|.+.+
T Consensus 178 ~v~~l~~~l~~~i 190 (191)
T 1oix_A 178 NVEAAFQTILTEI 190 (191)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998753
No 184
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.68 E-value=2.6e-16 Score=143.02 Aligned_cols=127 Identities=20% Similarity=0.348 Sum_probs=89.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhh-
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSA- 192 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~- 192 (348)
+..+|+++|.+|+|||||+|+|++..+..++..+++|.......+..++..+.+|||||+.+. ..+.....+.+..+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~--~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG--GYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEET--TEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCC--ccchHHHHHHHHHHh
Confidence 456899999999999999999999887667778888877766667778889999999997543 22222222223222
Q ss_pred -ccCccEEEEEecCCC-CCchHHHHHHHhcccc-cCC--CCEEEEEeccCCCChh
Q 018949 193 -GINADCIVVLVDACK-APERIDEILEEGVGDH-KDK--LPILLVLNKKDLIKPG 242 (348)
Q Consensus 193 -~~~ad~iv~VvD~~~-~~~~~~~~~~~~~~~~-~~~--~p~ivv~NK~Dl~~~~ 242 (348)
...+|+++||+|.+. ........+...+... +.+ .|+++|+||+|+....
T Consensus 116 ~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 357999999987754 3444443444433321 222 6999999999997643
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.67 E-value=9.1e-17 Score=152.08 Aligned_cols=160 Identities=20% Similarity=0.193 Sum_probs=101.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEe----------------------------------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHR---------------------------------------- 153 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~---------------------------------------- 153 (348)
.-++|+++|.+|+|||||+|+|+|..+....... +|+..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~-vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSS-CCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCc-ccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 3348999999999999999999997763222111 11000
Q ss_pred ---------------EEEEEeCCCeeEEEEeCCCCchhh----hhhhHHHHHHHHHhhccCccEEEEEecCCCCC--chH
Q 018949 154 ---------------ILGICSGPEYQMILYDTPGIIEKK----IHMLDSMMMKNVRSAGINADCIVVLVDACKAP--ERI 212 (348)
Q Consensus 154 ---------------~~~~~~~~~~~~~l~DtpG~~~~~----~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~--~~~ 212 (348)
...+.......+.+|||||+.... ...........+..++..+|++|+|+|++... ...
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~ 191 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD 191 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH
Confidence 111122334579999999986531 12344455566778899999999999876433 222
Q ss_pred HHHHHHhcccccCCCCEEEEEeccCCCChhh-HHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHH
Q 018949 213 DEILEEGVGDHKDKLPILLVLNKKDLIKPGE-IAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDW 277 (348)
Q Consensus 213 ~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~ 277 (348)
...+...+.. .+.|+++|+||+|+..... ............ ..+++++|++++.|+++.+..
T Consensus 192 ~~~l~~~~~~--~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 192 AIKISREVDP--SGDRTFGVLTKIDLMDKGTDAVEILEGRSFKL-KYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHSCT--TCTTEEEEEECGGGCCTTCCSHHHHTTSSSCC-SSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHhcc--cCCCEEEEEeCCccCCCcccHHHHHcCccccc-cCCeEEEEECChHHhccCCCH
Confidence 2334444444 5789999999999986432 112122111122 247899999999988876544
No 186
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.67 E-value=7.1e-17 Score=157.85 Aligned_cols=150 Identities=19% Similarity=0.167 Sum_probs=88.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCce------------------------eeecC------CCCceEEeEEEEEeCCCee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKL------------------------SIVTN------KPQTTRHRILGICSGPEYQ 164 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~------------------------~~~~~------~~~~t~~~~~~~~~~~~~~ 164 (348)
..+|+++|++++|||||+++|++... ..+.+ ..+.|.......+..++..
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 34899999999999999999974211 00111 2344544444455667789
Q ss_pred EEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCc-------hHHHHHHHhcccccCCCC-EEEEEecc
Q 018949 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPE-------RIDEILEEGVGDHKDKLP-ILLVLNKK 236 (348)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~-------~~~~~~~~~~~~~~~~~p-~ivv~NK~ 236 (348)
+.+|||||+.+ + ...+...+..+|++|+|+|++++.. .+.......+.. .++| +|+|+||+
T Consensus 123 ~~iiDtPGh~~--f-------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~ 191 (467)
T 1r5b_A 123 FSLLDAPGHKG--Y-------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKM 191 (467)
T ss_dssp EEECCCCC--------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECT
T ss_pred EEEEECCCcHH--H-------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECc
Confidence 99999999532 2 2334556789999999999988631 223333333344 5677 99999999
Q ss_pred CCCCh----hhHHH----HHHHHHhc-C-C---CCeEEEecCCCCCCHHHHH
Q 018949 237 DLIKP----GEIAK----KLEWYEKF-T-D---VDEVIPVSAKYGHGVEDIR 275 (348)
Q Consensus 237 Dl~~~----~~~~~----~~~~~~~~-~-~---~~~i~~vSA~~g~gi~eL~ 275 (348)
|+... ..... ....+... . . ..+++++||++|.|+.+++
T Consensus 192 Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 192 DEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 99641 21111 22222222 1 1 3479999999999998765
No 187
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=5.4e-16 Score=146.74 Aligned_cols=165 Identities=14% Similarity=0.145 Sum_probs=84.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCC--------CCceEEeEEEEEeCCC--eeEEEEeCCCCchh-----hhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK--------PQTTRHRILGICSGPE--YQMILYDTPGIIEK-----KIH 179 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~--------~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~-----~~~ 179 (348)
..+|+++|++|+|||||+|+|++......... +..+.......+...+ ..+.+|||||+.+. .+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 34799999999999999999987654322111 1111222222222233 47899999997442 223
Q ss_pred hhHHHHHHHHHhhcc-------------CccEEEEEecC-CCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH
Q 018949 180 MLDSMMMKNVRSAGI-------------NADCIVVLVDA-CKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (348)
Q Consensus 180 ~l~~~~~~~~~~~~~-------------~ad~iv~VvD~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~ 245 (348)
.+...+...+..++. ++|+++|+++. ..+....+..+...+. .++|+|+|+||+|+....++.
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~ev~ 193 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKERE 193 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHHHH
Confidence 333322222112221 24578888886 4556666655555443 579999999999999877665
Q ss_pred HHHHHHHh---cCCCCeEEEecCCCCCC---HHHHHHHHHHhCC
Q 018949 246 KKLEWYEK---FTDVDEVIPVSAKYGHG---VEDIRDWILTKLP 283 (348)
Q Consensus 246 ~~~~~~~~---~~~~~~i~~vSA~~g~g---i~eL~~~i~~~l~ 283 (348)
.....+.. ..+ .+++++||++|.| +..+...|.+.++
T Consensus 194 ~~k~~i~~~~~~~~-i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 194 RLKKRILDEIEEHN-IKIYHLPDAESDEDEDFKEQTRLLKASIP 236 (361)
T ss_dssp HHHHHHHHHTTCC--CCSCCCC---------CHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHCC-CCEEeCCCcCCCcchhHHHHHHHHHhcCC
Confidence 43223322 223 4789999999987 2334455555554
No 188
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.64 E-value=9.2e-16 Score=138.78 Aligned_cols=125 Identities=20% Similarity=0.252 Sum_probs=88.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhc
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAG 193 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~ 193 (348)
+..+|+++|++|+|||||+|+|++.....++..+++|.......+..++..+.+|||||+.+. ........+.+..++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~--~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA--GYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEET--TEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCc--ccchHHHHHHHHHHH
Confidence 456899999999999999999999987667788888888777777888899999999997542 233333333333333
Q ss_pred --cCccEEEEEecCCCC-CchHHHHHHHhcccc-cC--CCCEEEEEeccCCCC
Q 018949 194 --INADCIVVLVDACKA-PERIDEILEEGVGDH-KD--KLPILLVLNKKDLIK 240 (348)
Q Consensus 194 --~~ad~iv~VvD~~~~-~~~~~~~~~~~~~~~-~~--~~p~ivv~NK~Dl~~ 240 (348)
..+|++++|+|.+.. .......+...+... +. ..|+++|+||+|+..
T Consensus 113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 478999999877543 344433344433331 12 249999999999963
No 189
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.63 E-value=1.7e-16 Score=160.62 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=114.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceee-----------ecCCC------CceEEeEEEEEeCCCeeEEEEeCCCCchhhhh
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSI-----------VTNKP------QTTRHRILGICSGPEYQMILYDTPGIIEKKIH 179 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~-----------~~~~~------~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 179 (348)
+|+|+|+.++|||||..+|+.....+ +++.. +.|.......+.++++.++|+||||+.+..
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~-- 81 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL-- 81 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH--
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH--
Confidence 79999999999999999986321110 11111 223333334466788999999999987643
Q ss_pred hhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHH-------
Q 018949 180 MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYE------- 252 (348)
Q Consensus 180 ~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~------- 252 (348)
..+.+.++-+|++|+|||+..+.+.+.+.+++.+.. .++|.|+++||+|....+.. .....+.
T Consensus 82 -------~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~--~~lp~i~~INKmDr~~a~~~-~~~~~i~~~l~~~~ 151 (638)
T 3j25_A 82 -------AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK--MGIPTIFFINKIDQNGIDLS-TVYQDIKEKLSAEI 151 (638)
T ss_dssp -------HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH--HTCSCEECCEECCSSSCCSH-HHHHHHHHTTCCCC
T ss_pred -------HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCeEEEEeccccccCCHH-HHHHHHHHHhCCCc
Confidence 345566899999999999999999999998888887 78999999999998643210 0000000
Q ss_pred --------------------------------------------------------hcCCCCeEEEecCCCCCCHHHHHH
Q 018949 253 --------------------------------------------------------KFTDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 253 --------------------------------------------------------~~~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
......|++..||+++.|++.|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd 231 (638)
T 3j25_A 152 VIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIE 231 (638)
T ss_dssp CCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHH
T ss_pred cccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhh
Confidence 112345888999999999999999
Q ss_pred HHHHhCCCC
Q 018949 277 WILTKLPLG 285 (348)
Q Consensus 277 ~i~~~l~~~ 285 (348)
.+.+.++..
T Consensus 232 ~i~~~~p~p 240 (638)
T 3j25_A 232 VITNKFYSS 240 (638)
T ss_dssp HHHHSCCCS
T ss_pred hhhccccCc
Confidence 999988753
No 190
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.62 E-value=1.6e-16 Score=148.88 Aligned_cols=186 Identities=20% Similarity=0.286 Sum_probs=113.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCceEE-----------------eEEEE-------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTTRH-----------------RILGI------------- 157 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t~~-----------------~~~~~------------- 157 (348)
+...|+|+|++|+|||||+|++. +.++......+.++.. .....
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 44589999999999999999997 4455444333322210 00000
Q ss_pred ---------EeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC
Q 018949 158 ---------CSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP 228 (348)
Q Consensus 158 ---------~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p 228 (348)
+...+.++.++||||+.+... .....+|++++|+|+..+... . .+.......|
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~~------------~v~~~~d~vl~v~d~~~~~~~--~----~i~~~i~~~~ 195 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQSET------------AVADLTDFFLVLMLPGAGDEL--Q----GIKKGIFELA 195 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCHH------------HHHTTSSEEEEEECSCC------------CCTTHHHHC
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcchh------------hHHhhCCEEEEEEcCCCcccH--H----HHHHHHhccc
Confidence 123578899999999865321 113689999999998643210 0 0111001346
Q ss_pred EEEEEeccCCCChhh-HHHHHHHHHh----cC----C-CCeEEEecCCCCCCHHHHHHHHHHhCC---CCCCCCCCcccC
Q 018949 229 ILLVLNKKDLIKPGE-IAKKLEWYEK----FT----D-VDEVIPVSAKYGHGVEDIRDWILTKLP---LGPAYYPKDIVS 295 (348)
Q Consensus 229 ~ivv~NK~Dl~~~~~-~~~~~~~~~~----~~----~-~~~i~~vSA~~g~gi~eL~~~i~~~l~---~~~~~~~~~~~~ 295 (348)
.++|+||+|+..... .......+.. .. . ..+++++||++|.|+++|++.|.+... ..++ + .+..+
T Consensus 196 ~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~~~~~~~~-~-~~~r~ 273 (337)
T 2qm8_A 196 DMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTATGE-I-AGKRR 273 (337)
T ss_dssp SEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTH-H-HHHHH
T ss_pred cEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHhCcH-H-HHHHH
Confidence 688889999764322 2222222221 11 1 357899999999999999999988654 2211 1 12222
Q ss_pred CCchHHHHHHHHHHHHHhhccCCCC
Q 018949 296 EHPERFFVGEIIREKIFMQYRNEVP 320 (348)
Q Consensus 296 ~~~~~~~~~e~ire~~~~~~~~eip 320 (348)
....+++.+.+++++++.+++..+
T Consensus 274 -~~~~~~~~~~i~~~~~~~~~~~~~ 297 (337)
T 2qm8_A 274 -EQDVKWMWALVHERLHQRLVGSAE 297 (337)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTSSHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHhCcc
Confidence 234678999999999988877543
No 191
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.61 E-value=6.8e-16 Score=132.28 Aligned_cols=125 Identities=18% Similarity=0.244 Sum_probs=77.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeee--cCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIV--TNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRS 191 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~ 191 (348)
+..+|+++|.+|||||||+|++.+..+... +..+.++. ...+..+.+|||||... +...... .+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~--~~~~~~~---~~~~ 114 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGHVK--LRYKLSD---YLKT 114 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCB--SSCCHHH---HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-------eecCCeEEEEECCCCch--HHHHHHH---HHHh
Confidence 456999999999999999999998765321 12222221 22456799999999643 2222221 2233
Q ss_pred hccCccEEEEEecCCCCC---chHHHHHHHhccc----ccCCCCEEEEEeccCCCChhhHHHHHHH
Q 018949 192 AGINADCIVVLVDACKAP---ERIDEILEEGVGD----HKDKLPILLVLNKKDLIKPGEIAKKLEW 250 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~---~~~~~~~~~~~~~----~~~~~p~ivv~NK~Dl~~~~~~~~~~~~ 250 (348)
.+..+|++|+|+|++... .....++...+.. ...+.|+++|+||+|+............
T Consensus 115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 180 (193)
T 2ged_A 115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDA 180 (193)
T ss_dssp HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHH
T ss_pred hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHH
Confidence 346799999999998322 2222344443322 1257999999999999876544444333
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.58 E-value=4.2e-15 Score=130.35 Aligned_cols=153 Identities=16% Similarity=0.199 Sum_probs=96.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC-----ceeeecCCCCceEEe--------EEEEE------------------eCCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHR--------ILGIC------------------SGPE 162 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~-----~~~~~~~~~~~t~~~--------~~~~~------------------~~~~ 162 (348)
+.++|+++|.+|+|||||+++|++. +...+...++++.+. ....+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 3458999999999999999999864 233333344332100 00111 1234
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG 242 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 242 (348)
..+.+|||+|....+ .. +...++.+++|+|++.+...... .... .+.|+++|+||+|+.+..
T Consensus 109 ~d~iiidt~G~~~~~-~~-----------~~~~~~~~i~vvd~~~~~~~~~~----~~~~--~~~~~iiv~NK~Dl~~~~ 170 (221)
T 2wsm_A 109 CDLLLIENVGNLICP-VD-----------FDLGENYRVVMVSVTEGDDVVEK----HPEI--FRVADLIVINKVALAEAV 170 (221)
T ss_dssp CSEEEEEEEEBSSGG-GG-----------CCCSCSEEEEEEEGGGCTTHHHH----CHHH--HHTCSEEEEECGGGHHHH
T ss_pred CCEEEEeCCCCCCCC-ch-----------hccccCcEEEEEeCCCcchhhhh----hhhh--hhcCCEEEEecccCCcch
Confidence 678999999942111 00 01256789999999876432211 1111 357899999999986431
Q ss_pred --hHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 243 --EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 243 --~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
........+.......+++++||++|.|+++++++|.+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 171 GADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 334444444444444689999999999999999999887643
No 193
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.58 E-value=9e-15 Score=131.69 Aligned_cols=166 Identities=20% Similarity=0.143 Sum_probs=102.5
Q ss_pred CCccEEEEEcCCCCChHHHHHHHh-----CCceeeecCCCCceEE------------eEEEEE-----------------
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMI-----GQKLSIVTNKPQTTRH------------RILGIC----------------- 158 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~-----~~~~~~~~~~~~~t~~------------~~~~~~----------------- 158 (348)
.+...++++|.+||||||+++.|. |.+...+...++.+.. ......
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 355689999999999999999998 7777666544432110 000000
Q ss_pred ------------e-CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHH--H---HHhc
Q 018949 159 ------------S-GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEI--L---EEGV 220 (348)
Q Consensus 159 ------------~-~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~--~---~~~~ 220 (348)
. ..++.+.+|||||..+.. .... .......++.. +++|+|+|++........+ . ....
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~--~~~~-l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~ 167 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETF--LFHE-FGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID 167 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHH--HHSH-HHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccchh--hhhh-hHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh
Confidence 0 012479999999964321 1111 11223344567 9999999987554332211 1 1111
Q ss_pred ccccCCCCEEEEEeccCCCChhhHHHHHH----------H------------------HHhcCCCCeEEEecCCCCCCHH
Q 018949 221 GDHKDKLPILLVLNKKDLIKPGEIAKKLE----------W------------------YEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 221 ~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~----------~------------------~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
.. .+.|+++|+||+|+....+...... . +.......+++++||++|.|++
T Consensus 168 ~~--~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~ 245 (262)
T 1yrb_A 168 LR--LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFE 245 (262)
T ss_dssp HH--HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHH
T ss_pred cc--cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHH
Confidence 12 4689999999999987543221111 1 1222233478999999999999
Q ss_pred HHHHHHHHhCCC
Q 018949 273 DIRDWILTKLPL 284 (348)
Q Consensus 273 eL~~~i~~~l~~ 284 (348)
+|+++|.+.++.
T Consensus 246 ~l~~~i~~~~~~ 257 (262)
T 1yrb_A 246 DLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999887643
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.57 E-value=2.5e-14 Score=134.45 Aligned_cols=89 Identities=24% Similarity=0.271 Sum_probs=62.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCchhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKKI 178 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~ 178 (348)
.+|+|+|.||||||||+|+|++... .++++|++|.....+.+...+ ..+.+|||||+.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~-~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI-EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 3799999999999999999999873 467888888877666555544 4699999999865321
Q ss_pred hhhHHHHHHHHHhhccCccEEEEEecCCC
Q 018949 179 HMLDSMMMKNVRSAGINADCIVVLVDACK 207 (348)
Q Consensus 179 ~~l~~~~~~~~~~~~~~ad~iv~VvD~~~ 207 (348)
. ...+...++.+++.+|++++|+|+++
T Consensus 82 ~--~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 K--GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp H--HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred c--cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 1 11112234456789999999999986
No 195
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.56 E-value=3.8e-14 Score=145.21 Aligned_cols=116 Identities=17% Similarity=0.129 Sum_probs=82.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCcee-----e------ecCCC------CceEEeEEE--EEe-----CCCeeEEEEe
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLS-----I------VTNKP------QTTRHRILG--ICS-----GPEYQMILYD 169 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~-----~------~~~~~------~~t~~~~~~--~~~-----~~~~~~~l~D 169 (348)
+..+|+|+|+.++|||||..+|+..... . +++.. +.|...... .+. .+++.++|+|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 3448999999999999999998732211 0 11111 112211111 122 2367899999
Q ss_pred CCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 170 tpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
|||+.+.. .++...++-+|++|+|||+..+.+.+.+.+++.+.. .++|.++++||+|...
T Consensus 92 TPGHvDF~---------~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~--~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 92 TPGHVDFT---------IEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK--YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCSCTTCH---------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--HTCCEEEEEECSSSTT
T ss_pred CCCCcccH---------HHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEccccccC
Confidence 99987744 345566789999999999999999999998888877 7899999999999864
No 196
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.51 E-value=1.3e-13 Score=132.34 Aligned_cols=164 Identities=15% Similarity=0.179 Sum_probs=79.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecC------CCCceEEeEEE-EEeCC--CeeEEEEeCCCCchhhh-----hhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTN------KPQTTRHRILG-ICSGP--EYQMILYDTPGIIEKKI-----HML 181 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~------~~~~t~~~~~~-~~~~~--~~~~~l~DtpG~~~~~~-----~~l 181 (348)
.+|+|+|++|+|||||+|+|+|..+..... ...++...... .+... ...+.+|||||+..... ..+
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i 111 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPV 111 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHH
Confidence 379999999999999999999976531110 11122211111 11112 24689999999754211 111
Q ss_pred HHHHHHHHH-----------hhcc--CccEEEEEecCC-CCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHH
Q 018949 182 DSMMMKNVR-----------SAGI--NADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (348)
Q Consensus 182 ~~~~~~~~~-----------~~~~--~ad~iv~VvD~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~ 247 (348)
.......+. .++. .+++|+|+++.+ .+....+..+...+. .++|+|+|+||+|+....++...
T Consensus 112 ~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~~~ 188 (418)
T 2qag_C 112 IDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQQF 188 (418)
T ss_dssp HHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHHHH
Confidence 111111111 1233 355678887776 567666644554443 47899999999999887665432
Q ss_pred HHHHH---hcCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Q 018949 248 LEWYE---KFTDVDEVIPVSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 248 ~~~~~---~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l~ 283 (348)
...+. ...+ .+++.+||+++.++++++..+...+|
T Consensus 189 k~~i~~~~~~~~-i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 189 KKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHT-CCCCCCC-----------------CC
T ss_pred HHHHHHHHHHcC-CeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 22221 1122 36789999999999999988888765
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.49 E-value=4.4e-14 Score=133.44 Aligned_cols=86 Identities=22% Similarity=0.295 Sum_probs=63.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeC---------------------CCeeEEEEeCCCCch
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSG---------------------PEYQMILYDTPGIIE 175 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~~~~~~l~DtpG~~~ 175 (348)
+|+++|.||||||||+|+|++... .+.+++++|.....+.... .+..+.+|||||+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~~-~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANA-LAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHT-TCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-cccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 699999999999999999998752 3567777777665555432 135699999999865
Q ss_pred hhh--hhhHHHHHHHHHhhccCccEEEEEecCCC
Q 018949 176 KKI--HMLDSMMMKNVRSAGINADCIVVLVDACK 207 (348)
Q Consensus 176 ~~~--~~l~~~~~~~~~~~~~~ad~iv~VvD~~~ 207 (348)
... ..+. ..++.+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg----~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLG----NQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTT----HHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHH----HHHHHHHHhCCEEEEEEECCC
Confidence 321 1232 234455789999999999975
No 198
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.48 E-value=1.4e-13 Score=126.94 Aligned_cols=162 Identities=15% Similarity=0.146 Sum_probs=79.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCC-------CCce-EEeEEEEEe--CCCeeEEEEeCCCCch-----hhhhh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNK-------PQTT-RHRILGICS--GPEYQMILYDTPGIIE-----KKIHM 180 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~-------~~~t-~~~~~~~~~--~~~~~~~l~DtpG~~~-----~~~~~ 180 (348)
.+|+++|++|+|||||+++|.+......+.. ..+. ......... .....+.+|||||+.. ..+..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~ 98 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKT 98 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTT
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHH
Confidence 4799999999999999999988632221110 0111 111111121 2245789999999732 11222
Q ss_pred hHHHHHHHHHhh-------------ccCccEEEEEecCCC-CCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHH
Q 018949 181 LDSMMMKNVRSA-------------GINADCIVVLVDACK-APERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAK 246 (348)
Q Consensus 181 l~~~~~~~~~~~-------------~~~ad~iv~VvD~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~ 246 (348)
+...+......+ ...+++++|+++.+. +.......+...+ ..+.|+++|+||.|+....++..
T Consensus 99 l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l---~~~~~iilV~~K~Dl~~~~e~~~ 175 (301)
T 2qnr_A 99 IISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERER 175 (301)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHH---TTTSCEEEEECCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHH---HhcCCEEEEEEeCCCCCHHHHHH
Confidence 222111111111 123456777777654 4655543333332 24679999999999987655432
Q ss_pred ---HHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 247 ---KLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 247 ---~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
.........+ .+++++||++| |+++++..+.+.+
T Consensus 176 ~~~~~~~~~~~~~-~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 176 LKKRILDEIEEHN-IKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp HHHHHHHHHHHTT-CCCCCCC----------CHHHHHHH
T ss_pred HHHHHHHHHHHcC-CeEEecCCccc-cccHHHHHHHHHh
Confidence 2222223334 47899999999 9999998887655
No 199
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.47 E-value=3.1e-14 Score=148.19 Aligned_cols=115 Identities=22% Similarity=0.250 Sum_probs=78.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCC---------------CCceEEeEEE--EEe--------------CCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNK---------------PQTTRHRILG--ICS--------------GPE 162 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~---------------~~~t~~~~~~--~~~--------------~~~ 162 (348)
+..+|+|+|++|+|||||+++|++....+.... .+.|...... .+. ..+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 345899999999999999999986532221111 1122211111 121 236
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI 239 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 239 (348)
..+++|||||+.+. . ..+..+++.+|++|+|+|++++...+...++..... .++|+++|+||+|+.
T Consensus 98 ~~i~liDTPG~~df--~-------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 98 FLINLIDSPGHVDF--S-------SEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEECCCCCCSS--C-------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCEEEEEEECHHHH
T ss_pred ceEEEEECcCchhh--H-------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCeEEEEECCCcc
Confidence 78999999997542 2 224455789999999999998876666555444444 679999999999986
No 200
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.40 E-value=9.3e-13 Score=115.69 Aligned_cols=151 Identities=16% Similarity=0.174 Sum_probs=84.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCc-----eeeecCCCCceEEe--------EEEEEe--------------------C
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQK-----LSIVTNKPQTTRHR--------ILGICS--------------------G 160 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~-----~~~~~~~~~~t~~~--------~~~~~~--------------------~ 160 (348)
+.++|+++|.+|||||||+++++... ...+...++++.+. ....+. .
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 34589999999999999999998642 22222222211000 000000 0
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
.+..+.++|++|..... .. .-...+.++.|+|+..+...... .... .+.|.++|+||+|+.+
T Consensus 117 ~~~d~~~id~~g~i~~~-~s-----------~~~~~~~~~~v~~~~~~~~~~~~-~~~~-----~~~~~iiv~NK~Dl~~ 178 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP-AD-----------FDLGTHKRIVVISTTEGDDTIEK-HPGI-----MKTADLIVINKIDLAD 178 (226)
T ss_dssp GGCSEEEEECCSCSSGG-GG-----------CCCSCSEEEEEEEGGGCTTTTTT-CHHH-----HTTCSEEEEECGGGHH
T ss_pred CCCCEEEEeCCCCccCc-ch-----------hhhccCcEEEEEecCcchhhHhh-hhhH-----hhcCCEEEEeccccCc
Confidence 11256667777632111 00 01234556667765322211100 0111 2467899999999865
Q ss_pred hh--hHHHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 241 PG--EIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 241 ~~--~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
.. ...+....+.......+++++||++|.|+++++++|.+.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 179 AVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp HHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 32 2333334444444446899999999999999999998754
No 201
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.37 E-value=2.9e-13 Score=128.43 Aligned_cols=194 Identities=18% Similarity=0.139 Sum_probs=95.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCchhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKK 177 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~ 177 (348)
..+|+|+|.||||||||+|+|.+.+. .++++|++|..+..+.+...+ ..+.+|||||+....
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 34799999999999999999999887 578889999887777665443 249999999986432
Q ss_pred hhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCC
Q 018949 178 IHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDV 257 (348)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~ 257 (348)
+....+...+..+++.+|++++|+|+++... +.. ... ...| +|++|.....-.......+......
T Consensus 101 --s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~-----i~~-v~~--~~dP----~~di~~i~~El~l~d~~~~~k~~~~ 166 (396)
T 2ohf_A 101 --HNGQGLGNAFLSHISACDGIFHLTRAFEDDD-----ITH-VEG--SVDP----IRDIEIIHEELQLKDEEMIGPIIDK 166 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC--------------------CTT----HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred --chhhHHHHHHHHHHHhcCeEEEEEecCCCcc-----hhh-hcC--CCCh----HHHHHHhhhhhhhhhHHHHHHhhhh
Confidence 2122222345677899999999999974321 111 111 1233 4555544322111111222221111
Q ss_pred CeEEEec--CCCCCCHHHHHHHHHHhCCCC-CCCC-CCcccCCCchHHHHHHHHHHHHHhhccCCCCceEEEEeeEE
Q 018949 258 DEVIPVS--AKYGHGVEDIRDWILTKLPLG-PAYY-PKDIVSEHPERFFVGEIIREKIFMQYRNEVPYACQVCNLTF 330 (348)
Q Consensus 258 ~~i~~vS--A~~g~gi~eL~~~i~~~l~~~-~~~~-~~~~~~~~~~~~~~~e~ire~~~~~~~~eip~~~~~~~~~~ 330 (348)
......| ++.+.+..++++.+...++.. ++.. .. +..... .+++ +.++.....++||.+-+..+.+
T Consensus 167 ~~k~~~~~g~~~~~~~~~ll~~i~~~L~e~~~~~~~~~----~~~~~e--~e~i-~~~~llt~KPviy~~Nv~e~~~ 236 (396)
T 2ohf_A 167 LEKVAVRGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYH----DWNDKE--IEVL-NKHLFLTSKPMVYLVNLSEKDY 236 (396)
T ss_dssp TCSCC--------CCHHHHHHHHHHHTTC--CCGGGCC----CCCHHH--HHHH-HHHCCGGGSCEEEEEECCHHHH
T ss_pred hhhhhhcccchhhhhHHHHHHHHHHHHHhcCcchhhcc----cCCHHH--HHHH-HHHHHHhCCceEEEEEecHHHh
Confidence 1122333 567788999999999998876 4321 11 111111 2344 4555667788898887765444
No 202
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.33 E-value=2.6e-14 Score=135.48 Aligned_cols=149 Identities=22% Similarity=0.232 Sum_probs=95.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC-----ceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh--hhhhHHHHHHH
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ-----KLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMKN 188 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~--~~~l~~~~~~~ 188 (348)
.+|+++|.+|+|||||+|+|++. ....++..+++|+......+.. .+.++||||+.... ...+.......
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES---GATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST---TCEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 47999999999999999999986 4555788999998876654432 38999999986532 11121111111
Q ss_pred HHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCCC
Q 018949 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYG 268 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g 268 (348)
. ......|.++|++++......-.......+.. .+.|+++++||+|.....+.......+.+..+. .+.+.++...
T Consensus 240 ~-~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~--~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~-~l~p~~~~~~ 315 (369)
T 3ec1_A 240 I-TPKREIHPRVYQLNEGQTLFFGGLARLDYIKG--GRRSFVCYMANELTVHRTKLEKADSLYANQLGE-LLSPPSKRYA 315 (369)
T ss_dssp H-SCSSCCCCEEEEECTTEEEEETTTEEEEEEES--SSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTT-TBCSSCGGGT
T ss_pred H-hcccccCceEEEEcCCceEEECCEEEEEEccC--CCceEEEEecCCcccccccHHHHHHHHHHhcCC-ccCCCCchhh
Confidence 1 11267899999999853210000000223333 578999999999998665555555556555553 4555565554
Q ss_pred CCH
Q 018949 269 HGV 271 (348)
Q Consensus 269 ~gi 271 (348)
.++
T Consensus 316 ~~~ 318 (369)
T 3ec1_A 316 AEF 318 (369)
T ss_dssp TTC
T ss_pred hhc
Confidence 444
No 203
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.31 E-value=4.9e-12 Score=118.88 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=78.0
Q ss_pred EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC------------chHHHHHHHhccc-c
Q 018949 157 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP------------ERIDEILEEGVGD-H 223 (348)
Q Consensus 157 ~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~------------~~~~~~~~~~~~~-~ 223 (348)
.+..++..+.+|||+| +..++.+ +..+++.++++|||+|.++.. .....++...+.. .
T Consensus 187 ~~~~~~~~l~iwDt~G--Qe~~r~~-------w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 187 HFTFKDLHFKMFDVGG--QRSERKK-------WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp EEEETTEEEEEEEECC--SGGGGGG-------GGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred EEeeCCeeEEEEeCCC--chhhhHH-------HHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 3455678899999999 5444443 446689999999999998731 2223334344332 1
Q ss_pred cCCCCEEEEEeccCCCChh-----------------hHHHHHHHHH----hc-----CCCCeEEEecCCCCCCHHHHHHH
Q 018949 224 KDKLPILLVLNKKDLIKPG-----------------EIAKKLEWYE----KF-----TDVDEVIPVSAKYGHGVEDIRDW 277 (348)
Q Consensus 224 ~~~~p~ivv~NK~Dl~~~~-----------------~~~~~~~~~~----~~-----~~~~~i~~vSA~~g~gi~eL~~~ 277 (348)
..+.|+|+|+||+|+.... ...+....+. .. .....+++|||++|.||+++|++
T Consensus 258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~ 337 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDA 337 (353)
T ss_dssp GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHH
Confidence 2679999999999985211 1222222222 11 23347899999999999999999
Q ss_pred HHHhC
Q 018949 278 ILTKL 282 (348)
Q Consensus 278 i~~~l 282 (348)
+.+.+
T Consensus 338 v~~~i 342 (353)
T 1cip_A 338 VTDVI 342 (353)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98765
No 204
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.31 E-value=1.5e-11 Score=117.67 Aligned_cols=190 Identities=18% Similarity=0.172 Sum_probs=112.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCc----eeeecCCCCceEEeEEEEEeCC-CeeEEEEeCCCCchhhhhhhHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQK----LSIVTNKPQTTRHRILGICSGP-EYQMILYDTPGIIEKKIHMLDSMMMKN 188 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~----~~~~~~~~~~t~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~l~~~~~~~ 188 (348)
+.+.|+|+|++|+|||||+|.|.|.. ..+......+|+... +.... ...+.++|+||+... ...+...+ +.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~--v~q~~~~~~ltv~D~~g~~~~-~~~~~~~L-~~ 143 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLPGIGST-NFPPDTYL-EK 143 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSCTTEEEEECCCGGGS-SCCHHHHH-HH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE--eccccccCCeeehHhhcccch-HHHHHHHH-HH
Confidence 34489999999999999999999832 221111222222211 22222 235899999997532 12222222 11
Q ss_pred HHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCC------------ChhhHHHHHHHHH----
Q 018949 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLI------------KPGEIAKKLEWYE---- 252 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~------------~~~~~~~~~~~~~---- 252 (348)
+ .+...+..++ ++... .+.+...+...+.. .+.|+++|.||.|+. ....+.+.+..+.
T Consensus 144 ~--~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l 217 (413)
T 1tq4_A 144 M--KFYEYDFFII-ISATR-FKKNDIDIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF 217 (413)
T ss_dssp T--TGGGCSEEEE-EESSC-CCHHHHHHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred c--CCCccCCeEE-eCCCC-ccHHHHHHHHHHHh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 1 1334455555 66644 35555556666555 578999999999975 1223333333332
Q ss_pred -hc-CCCCeEEEecC--CCCCCHHHHHHHHHHhCCCCCCCC-----CC-cccCCCchHHHHHHHHHHHHHh
Q 018949 253 -KF-TDVDEVIPVSA--KYGHGVEDIRDWILTKLPLGPAYY-----PK-DIVSEHPERFFVGEIIREKIFM 313 (348)
Q Consensus 253 -~~-~~~~~i~~vSA--~~g~gi~eL~~~i~~~l~~~~~~~-----~~-~~~~~~~~~~~~~e~ire~~~~ 313 (348)
.. .....++.+|+ ..+.|+++|.+.|.+.++..++.+ |. ...+....+....+.+|.+.+.
T Consensus 218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~~~~~l~~~~~~~~e~k~~~~~~~i~~~a~~ 288 (413)
T 1tq4_A 218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFA 288 (413)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22347899999 667789999999999999887665 32 1222334455566777776543
No 205
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.31 E-value=9.3e-14 Score=131.60 Aligned_cols=144 Identities=23% Similarity=0.223 Sum_probs=90.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc------eeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhh--hhhhHHHHHH
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK------LSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKK--IHMLDSMMMK 187 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~--~~~l~~~~~~ 187 (348)
.+|+++|.+|+|||||+|+|++.. ...++..+++|+......+.. .+.++||||+.+.. ...+......
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 479999999999999999999752 444688999998876654432 28999999986542 1122222211
Q ss_pred HHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCC
Q 018949 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 188 ~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
.. ......+.++|+++.......-.......+.. .+.|+++++||+|.....+.......+.+..+. .+.+.++.
T Consensus 238 ~~-~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~--~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~-~l~p~~~~ 312 (368)
T 3h2y_A 238 LI-TPTKEIKPMVFQLNEEQTLFFSGLARFDYVSG--GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGD-LLSPPTPE 312 (368)
T ss_dssp HH-SCSSCCCCEEEEECTTEEEEETTTEEEEEEES--SSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTT-TBCSSCHH
T ss_pred Hh-ccccccCceEEEEcCCCEEEEcceEEEEEecC--CCceEEEEecCccccccccHHHHHHHHHHHhCC-ccCCCchh
Confidence 11 12467889999999843210000001223333 578999999999998777776666677666554 34454543
No 206
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.25 E-value=2.3e-11 Score=115.59 Aligned_cols=89 Identities=24% Similarity=0.242 Sum_probs=68.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCC-----------------eeEEEEeCCCCchhh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPE-----------------YQMILYDTPGIIEKK 177 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~ 177 (348)
..+|+|+|.+|||||||+|+|++...+.++++|++|..+..+.+...+ ..+.++||||+....
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 448999999999999999999998875678999999888777766554 468999999976422
Q ss_pred h--hhhHHHHHHHHHhhccCccEEEEEecCCC
Q 018949 178 I--HMLDSMMMKNVRSAGINADCIVVLVDACK 207 (348)
Q Consensus 178 ~--~~l~~~~~~~~~~~~~~ad~iv~VvD~~~ 207 (348)
. ..+. ..+...++.+|++++|+|+..
T Consensus 100 s~~e~L~----~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLG----NAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSC----HHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHH----HHHHHHHHHHHHHHHHHhccc
Confidence 1 1222 234455689999999999864
No 207
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.24 E-value=2.7e-11 Score=112.77 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=77.0
Q ss_pred EEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCC---------CC---chHHHHHHHhccc
Q 018949 155 LGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK---------AP---ERIDEILEEGVGD 222 (348)
Q Consensus 155 ~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~---------~~---~~~~~~~~~~~~~ 222 (348)
...+..++..+.+|||+| +..++ ..+..+++.++++|||+|.++ .. .....++...+..
T Consensus 153 ~~~~~~~~v~l~iwDtaG--Qe~~R-------~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~ 223 (340)
T 4fid_A 153 EYDFVVKDIPFHLIDVGG--QRSER-------KXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN 223 (340)
T ss_dssp EEEEESSSCEEEEEECCS--CHHHH-------HHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC
T ss_pred EEEEEeeeeeeccccCCC--ccccc-------ccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh
Confidence 344566778999999999 54433 345677999999999999972 12 2222344444332
Q ss_pred c-cCCCCEEEEEeccCCCChh-----------------hHHHHHHHHHhcC-------------------------CCCe
Q 018949 223 H-KDKLPILLVLNKKDLIKPG-----------------EIAKKLEWYEKFT-------------------------DVDE 259 (348)
Q Consensus 223 ~-~~~~p~ivv~NK~Dl~~~~-----------------~~~~~~~~~~~~~-------------------------~~~~ 259 (348)
. ..+.|+++++||+|+.... ..++....+.... ....
T Consensus 224 ~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 303 (340)
T 4fid_A 224 EFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVY 303 (340)
T ss_dssp GGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEE
T ss_pred hccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceE
Confidence 1 2679999999999985321 1112111111111 1235
Q ss_pred EEEecCCCCCCHHHHHHHHHHhC
Q 018949 260 VIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 260 i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
++++||+++.|++.+|..+.+.+
T Consensus 304 ~h~TsA~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 304 TNPTNATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEeeCcHHHHHHHHHHHHHH
Confidence 68899999999999999887654
No 208
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.21 E-value=1.2e-10 Score=111.38 Aligned_cols=146 Identities=14% Similarity=0.210 Sum_probs=84.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceee---ecCCCCceEEeEEEEEeCCC--eeEEEEeCCCCchhhh-----hhh----H
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSI---VTNKPQTTRHRILGICSGPE--YQMILYDTPGIIEKKI-----HML----D 182 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~---~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~-----~~l----~ 182 (348)
+++|+|++|+|||||+|.|+|..+.. ....++.+...+..+....+ ..+.++|++|+..... ..+ .
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~ 123 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFID 123 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHH
Confidence 49999999999999999999975321 11233444443333333322 3689999999864311 111 1
Q ss_pred HHHHHHHHhh---------ccCcc---EEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHH
Q 018949 183 SMMMKNVRSA---------GINAD---CIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEW 250 (348)
Q Consensus 183 ~~~~~~~~~~---------~~~ad---~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~ 250 (348)
..+......+ ..+++ +++|++|+..+....+..+...+. .+.|+|+|+||+|.....++......
T Consensus 124 ~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~---~~~~vI~Vi~KtD~Lt~~E~~~l~~~ 200 (427)
T 2qag_B 124 AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD---SKVNIIPIIAKADAISKSELTKFKIK 200 (427)
T ss_dssp HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC---SCSEEEEEESCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh---hCCCEEEEEcchhccchHHHHHHHHH
Confidence 1111111111 12333 467788888888777766666664 57899999999999988877666655
Q ss_pred HHh--cCCCCeEEEecC
Q 018949 251 YEK--FTDVDEVIPVSA 265 (348)
Q Consensus 251 ~~~--~~~~~~i~~vSA 265 (348)
+.. .....+++.+|.
T Consensus 201 I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 201 ITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHcCCcEEecCC
Confidence 554 112234555553
No 209
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.20 E-value=9.2e-11 Score=108.78 Aligned_cols=119 Identities=13% Similarity=0.048 Sum_probs=76.9
Q ss_pred EEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCC-------C--CCc---hHHHHHHHhcccc
Q 018949 156 GICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDAC-------K--APE---RIDEILEEGVGDH 223 (348)
Q Consensus 156 ~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~-------~--~~~---~~~~~~~~~~~~~ 223 (348)
..+..++..+.+|||+| +..++.+ +..+++.++++|||+|.+ + ... ....++...+...
T Consensus 160 ~~~~~~~v~l~iwDtgG--Qe~~R~~-------w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 160 YPFDLQSVIFRMVDVGG--QRSERRK-------WIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp EEEEETTEEEEEEEECC--SHHHHTT-------GGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred EEEEeeceeeEEEEcCC--chhHHHH-------HHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 34556778999999999 5444433 556789999999999765 1 122 2223344443321
Q ss_pred -cCCCCEEEEEeccCCCChh------------------hHHHHHHHH----Hh----cCCCCeEEEecCCCCCCHHHHHH
Q 018949 224 -KDKLPILLVLNKKDLIKPG------------------EIAKKLEWY----EK----FTDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 224 -~~~~p~ivv~NK~Dl~~~~------------------~~~~~~~~~----~~----~~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
..+.|+++++||+|+.... ..++....+ .. ......++++||+++.||+.+|.
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~ 310 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA 310 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence 2679999999999985322 122222221 11 11223568899999999999999
Q ss_pred HHHHhCC
Q 018949 277 WILTKLP 283 (348)
Q Consensus 277 ~i~~~l~ 283 (348)
.+.+.+.
T Consensus 311 ~v~~~Il 317 (327)
T 3ohm_A 311 AVKDTIL 317 (327)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
No 210
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.19 E-value=1.7e-11 Score=120.03 Aligned_cols=160 Identities=21% Similarity=0.277 Sum_probs=95.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCce-----------E--EeEEEE----------------E
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-----------R--HRILGI----------------C 158 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t-----------~--~~~~~~----------------~ 158 (348)
+...|+++|.+||||||++++|. |.++..++..+... + ...... +
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998 77766554422110 0 001110 0
Q ss_pred eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCE-EEEEeccC
Q 018949 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKD 237 (348)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~NK~D 237 (348)
...++.++++||||..+... .+...+.. .... ..+|.+++|+|++.+.... . ....+.. ..|+ ++|+||+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~-~l~~el~~-~~~~-i~pd~vllVvDa~~g~~~~-~-~a~~~~~---~~~i~gvVlNK~D 251 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQED-SLFEEMLQ-VANA-IQPDNIVYVMDASIGQACE-A-QAKAFKD---KVDVASVIVTKLD 251 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCH-HHHHHHHH-HHHH-HCCSEEEEEEETTCCTTHH-H-HHHHHHH---HHCCCCEEEECTT
T ss_pred HHCCCcEEEEeCCCCcccch-hHHHHHHH-HHhh-hcCceEEEEEeccccccHH-H-HHHHHHh---hcCceEEEEeCCc
Confidence 11567899999999754221 12121111 1122 3789999999998765421 1 2222222 2675 89999999
Q ss_pred CCChhh-HHHHHHHHHh-------------cCCCCeEEEecCCCCCC-HHHHHHHHHHh
Q 018949 238 LIKPGE-IAKKLEWYEK-------------FTDVDEVIPVSAKYGHG-VEDIRDWILTK 281 (348)
Q Consensus 238 l~~~~~-~~~~~~~~~~-------------~~~~~~i~~vSA~~g~g-i~eL~~~i~~~ 281 (348)
...... .......+.. ...+.+.+++|+.+|.| +.+|++++.+.
T Consensus 252 ~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 875322 1112222110 11233456689999999 99999999876
No 211
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.18 E-value=2.3e-12 Score=124.29 Aligned_cols=191 Identities=16% Similarity=0.186 Sum_probs=103.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhC------CceeeecCCCC------------------------ceEEeE----EEEEeCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQ------------------------TTRHRI----LGICSGP 161 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~------------------------~t~~~~----~~~~~~~ 161 (348)
..|+++|.+|+||||++++|.+ .++..+...+. ++.+.. ..+....
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~ 179 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 179 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999875 33333322111 222210 0111125
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCC-C-EEEEEeccCCC
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKL-P-ILLVLNKKDLI 239 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~-p-~ivv~NK~Dl~ 239 (348)
++.+.++||||..... ..+...+ .. ...+..+|.+++|+|++.+... ... ...+. ... | ..+|+||+|..
T Consensus 180 ~~D~vIIDT~G~~~~~-~~l~~~l-~~-i~~~~~~d~vllVvda~~g~~~-~~~-~~~~~---~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEE-KGLLEEM-KQ-IKEITNPDEIILVIDGTIGQQA-GIQ-AKAFK---EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SCSEEEEECCCSCSSH-HHHHHHH-HH-TTSSSCCSEEEEEEEGGGGGGH-HHH-HHHHH---TTSCSCEEEEEECSSSC
T ss_pred CCCEEEEcCCCCcccc-HHHHHHH-HH-HHHHhcCcceeEEeeccccHHH-HHH-HHHHh---hcccCCeEEEEeCCCCc
Confidence 6789999999975421 1111111 11 1223478999999999765422 111 22222 345 6 78999999986
Q ss_pred ChhhHHHHHHHHHhcC----------------CCCeEEEecCCCCCC-HHHHHHHHHHhCCCCCCCCCCcccCCCchHHH
Q 018949 240 KPGEIAKKLEWYEKFT----------------DVDEVIPVSAKYGHG-VEDIRDWILTKLPLGPAYYPKDIVSEHPERFF 302 (348)
Q Consensus 240 ~~~~~~~~~~~~~~~~----------------~~~~i~~vSA~~g~g-i~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 302 (348)
..... ......... .+.|..++|+..|.| +..|++.+.+.+ +.+. ++.+.++.
T Consensus 252 ~~~g~--~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~-------~e~~-~~~~~k~~ 321 (432)
T 2v3c_C 252 AKGGG--ALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMV-------DEKT-EESIDAIM 321 (432)
T ss_dssp STTHH--HHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCS-------CSSS-STTHHHHC
T ss_pred cchHH--HHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHH-------Hhhh-HHHHHHHH
Confidence 43221 112111111 112334456666666 665555554433 3333 55666666
Q ss_pred HHHHHHHHHHhhccC------------CCCceEE
Q 018949 303 VGEIIREKIFMQYRN------------EVPYACQ 324 (348)
Q Consensus 303 ~~e~ire~~~~~~~~------------eip~~~~ 324 (348)
..++.++.++..+++ ++||...
T Consensus 322 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~~~ 355 (432)
T 2v3c_C 322 RGKFTLNELMTQLEAIENMGSMKKILSMIPGFGG 355 (432)
T ss_dssp CSCCHHHHHHHHTTTTSCC---------------
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHcccccc
Confidence 667888999998887 9999654
No 212
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.09 E-value=5.1e-10 Score=101.35 Aligned_cols=132 Identities=17% Similarity=0.294 Sum_probs=77.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeec-------CCCCceEEeEEEEEe-CC--CeeEEEEeCCCCchhhh-----hh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVT-------NKPQTTRHRILGICS-GP--EYQMILYDTPGIIEKKI-----HM 180 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~-------~~~~~t~~~~~~~~~-~~--~~~~~l~DtpG~~~~~~-----~~ 180 (348)
.+++++|++|+|||||+|.|.|....... +.+.++.....+.+. .. ...+.++|+||+..... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 37999999999999999999875432111 111122111122211 11 23689999999854211 11
Q ss_pred hHHHHHHHH----Hh----------hccCccEEEEEecCC-CCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHH
Q 018949 181 LDSMMMKNV----RS----------AGINADCIVVLVDAC-KAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIA 245 (348)
Q Consensus 181 l~~~~~~~~----~~----------~~~~ad~iv~VvD~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~ 245 (348)
+........ .. .+..++++++++|.. .+....+..+...+.. . .++|+|+||+|.....+..
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~--~-~~vI~Vi~K~D~lt~~e~~ 159 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK--V-VNIIPVIAKADTMTLEEKS 159 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT--T-SEEEEEETTGGGSCHHHHH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh--c-CcEEEEEeccccCCHHHHH
Confidence 222221111 11 134568899999965 6667777666666655 4 8999999999999877665
Q ss_pred HHHHH
Q 018949 246 KKLEW 250 (348)
Q Consensus 246 ~~~~~ 250 (348)
.....
T Consensus 160 ~~k~~ 164 (270)
T 3sop_A 160 EFKQR 164 (270)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 213
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.03 E-value=8e-10 Score=101.70 Aligned_cols=132 Identities=18% Similarity=0.250 Sum_probs=82.6
Q ss_pred HHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCC
Q 018949 130 TLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAP 209 (348)
Q Consensus 130 sLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~ 209 (348)
+|+.++....+.. ..+..|..+.....+..++ .+.+||| ++.+..+.. .+++.+|++|+|+|++++.
T Consensus 32 sl~~~~~~~~f~~-~~~~pTiGd~~~~~~~~~~-~~~iwD~----qer~~~l~~-------~~~~~ad~vilV~D~~~~~ 98 (301)
T 1u0l_A 32 ERILCKLRGKFRL-QNLKIYVGDRVEYTPDETG-SGVIENV----LHRKNLLTK-------PHVANVDQVILVVTVKMPE 98 (301)
T ss_dssp CEEEEEECGGGTT-TTCCCCTTCEEEEECCCSS-SEEEEEE----CCCSCEETT-------TTEESCCEEEEEECSSTTC
T ss_pred cEEEEEEcccccc-cCCCCCCccEEEEEEcCCC-eEEEEEE----ccccceeec-------cccccCCEEEEEEeCCCCC
Confidence 5666666555430 1122222222222222333 7999999 334444433 4689999999999998764
Q ss_pred ---chHHHHHHHhcccccCCCCEEEEEeccCCCChhhH---HHHHHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHH
Q 018949 210 ---ERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEI---AKKLEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILT 280 (348)
Q Consensus 210 ---~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~ 280 (348)
.....|+ ..++. .++|+++|+||+|+.+...+ ......+... .++++|||++|.|+++++..+..
T Consensus 99 ~s~~~l~~~l-~~~~~--~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~---~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 99 TSTYIIDKFL-VLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGL---YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp CCHHHHHHHH-HHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT---SCEEECCTTTCTTHHHHHHHHSS
T ss_pred CCHHHHHHHH-HHHHH--CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh---CcEEEEECCCCcCHHHHHHHhcC
Confidence 2223333 33344 67999999999999876543 2222222221 58999999999999999998764
No 214
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.95 E-value=1.1e-09 Score=103.21 Aligned_cols=117 Identities=15% Similarity=0.070 Sum_probs=74.5
Q ss_pred EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCC---------C---chHHHHHHHhccc-c
Q 018949 157 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKA---------P---ERIDEILEEGVGD-H 223 (348)
Q Consensus 157 ~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~---------~---~~~~~~~~~~~~~-~ 223 (348)
.+..++..+.+|||+| +..+. ..+..+++.++++|||+|.++. . .....++...+.. .
T Consensus 195 ~~~~~~~~l~i~Dt~G--q~~~r-------~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~ 265 (362)
T 1zcb_A 195 DFEIKNVPFKMVDVGG--QRSER-------KRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRV 265 (362)
T ss_dssp EEEETTEEEEEEEECC----------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred EeeeCCeEEEEEeccc--hhhhh-------hhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchh
Confidence 3455678999999999 43333 2345668999999999999872 1 2223344444432 1
Q ss_pred cCCCCEEEEEeccCCCCh------------------hhHHHHHHHH----Hhc-----CCCCeEEEecCCCCCCHHHHHH
Q 018949 224 KDKLPILLVLNKKDLIKP------------------GEIAKKLEWY----EKF-----TDVDEVIPVSAKYGHGVEDIRD 276 (348)
Q Consensus 224 ~~~~p~ivv~NK~Dl~~~------------------~~~~~~~~~~----~~~-----~~~~~i~~vSA~~g~gi~eL~~ 276 (348)
..+.|+|+|+||+|+... ....+....+ ... .....+++|||+++.|++++|+
T Consensus 266 ~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~ 345 (362)
T 1zcb_A 266 FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFR 345 (362)
T ss_dssp GTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHH
T ss_pred hCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHH
Confidence 267999999999998521 1122222221 111 1234789999999999999999
Q ss_pred HHHHhC
Q 018949 277 WILTKL 282 (348)
Q Consensus 277 ~i~~~l 282 (348)
++.+.+
T Consensus 346 ~v~~~i 351 (362)
T 1zcb_A 346 DVKDTI 351 (362)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 215
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.92 E-value=2.1e-10 Score=104.53 Aligned_cols=60 Identities=30% Similarity=0.452 Sum_probs=39.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
+..+|+++|.||||||||+|+|.+.+...+++.+++|+....... +..+.++||||+...
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV---GKELELLDTPGILWP 178 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE---TTTEEEEECCCCCCS
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe---CCCEEEEECcCcCCC
Confidence 445899999999999999999999987778899999988754333 236899999998654
No 216
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.86 E-value=4e-09 Score=100.32 Aligned_cols=117 Identities=9% Similarity=0.102 Sum_probs=76.4
Q ss_pred EEeCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCC----------CC--chHHHHHHHhccc-c
Q 018949 157 ICSGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK----------AP--ERIDEILEEGVGD-H 223 (348)
Q Consensus 157 ~~~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~----------~~--~~~~~~~~~~~~~-~ 223 (348)
.+..++..+.+|||+| +..+..+ +..+++.++++|||+|.++ .. .....++...+.. .
T Consensus 211 ~~~~~~v~l~iwDtaG--Qe~~r~~-------w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~ 281 (402)
T 1azs_C 211 KFQVDKVNFHMFDVGG--QRDERRK-------WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRW 281 (402)
T ss_dssp EEEETTEEEEEEEECC--SGGGGGG-------GGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTT
T ss_pred EeecCCccceecccch--hhhhhhh-------hHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhccc
Confidence 3455678999999999 5554444 4466899999999999986 21 2233344444432 1
Q ss_pred cCCCCEEEEEeccCCCChhh--------------------------------HHHHHHH----HHhc-------CCCCeE
Q 018949 224 KDKLPILLVLNKKDLIKPGE--------------------------------IAKKLEW----YEKF-------TDVDEV 260 (348)
Q Consensus 224 ~~~~p~ivv~NK~Dl~~~~~--------------------------------~~~~~~~----~~~~-------~~~~~i 260 (348)
..+.|++||+||+|+..... ....... +... .....+
T Consensus 282 ~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~ 361 (402)
T 1azs_C 282 LRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYP 361 (402)
T ss_dssp CSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEE
T ss_pred CCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEE
Confidence 26799999999999843211 1111111 1111 112356
Q ss_pred EEecCCCCCCHHHHHHHHHHhC
Q 018949 261 IPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 261 ~~vSA~~g~gi~eL~~~i~~~l 282 (348)
++|||+++.||+++|..+.+.+
T Consensus 362 ~~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 362 HFTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp EECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEeecCcCHHHHHHHHHHHH
Confidence 7999999999999999987654
No 217
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.86 E-value=3e-09 Score=99.82 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=71.3
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCC---------CC---chHHHHHHHhcccc-cCCC
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACK---------AP---ERIDEILEEGVGDH-KDKL 227 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~---------~~---~~~~~~~~~~~~~~-~~~~ 227 (348)
+...+.+|||+| +..+..+ +..+++.++++|+|+|.+. .. .....++....... ..+.
T Consensus 181 ~~v~l~iwDtaG--Qe~~r~~-------~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~ 251 (354)
T 2xtz_A 181 SGEVYRLFDVGG--QRNERRK-------WIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 251 (354)
T ss_dssp ---EEEEEEECC--STTGGGG-------TGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSC
T ss_pred cceeeEEEECCC--chhhhHH-------HHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCC
Confidence 457899999999 5555544 4466899999999999871 22 22233443343321 2679
Q ss_pred CEEEEEeccCCCChh-----------------------hHHHHHHHHHh----c----------CCCCeEEEecCCCCCC
Q 018949 228 PILLVLNKKDLIKPG-----------------------EIAKKLEWYEK----F----------TDVDEVIPVSAKYGHG 270 (348)
Q Consensus 228 p~ivv~NK~Dl~~~~-----------------------~~~~~~~~~~~----~----------~~~~~i~~vSA~~g~g 270 (348)
|+++|+||+|+.... ..++....+.. . .....+++|||+++.|
T Consensus 252 piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~n 331 (354)
T 2xtz_A 252 SFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKL 331 (354)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHH
T ss_pred eEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchh
Confidence 999999999984211 11111111111 0 1223468999999999
Q ss_pred HHHHHHHHHHhC
Q 018949 271 VEDIRDWILTKL 282 (348)
Q Consensus 271 i~eL~~~i~~~l 282 (348)
|+++|+++.+.+
T Consensus 332 V~~vF~~v~~~I 343 (354)
T 2xtz_A 332 VKKTFKLVDETL 343 (354)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 218
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.78 E-value=2.2e-08 Score=86.12 Aligned_cols=100 Identities=11% Similarity=0.044 Sum_probs=67.5
Q ss_pred HHHHHHhhccCccEEEEEecCCCCC-chHHHHH---HHhcccc--cCCCCEEEEEecc-CCCChhhHHHHHHHHH--hcC
Q 018949 185 MMKNVRSAGINADCIVVLVDACKAP-ERIDEIL---EEGVGDH--KDKLPILLVLNKK-DLIKPGEIAKKLEWYE--KFT 255 (348)
Q Consensus 185 ~~~~~~~~~~~ad~iv~VvD~~~~~-~~~~~~~---~~~~~~~--~~~~p~ivv~NK~-Dl~~~~~~~~~~~~~~--~~~ 255 (348)
+...+..|+..+|++|||||+++.. ......+ ...+... ..+.|++|++||. |++..-...+....+. ...
T Consensus 115 lRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~ 194 (227)
T 3l82_B 115 VIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLN 194 (227)
T ss_dssp --CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGC
T ss_pred HHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCC
Confidence 3345667889999999999998653 1233333 3334332 2578999999995 7765433333333222 123
Q ss_pred CCCeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 256 DVDEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 256 ~~~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
..+.+.+|||.+|+|+.+-++||.+.+..
T Consensus 195 R~W~Iq~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 195 HPWLVQDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp SCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred CCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence 55689999999999999999999987754
No 219
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.76 E-value=4.8e-08 Score=93.87 Aligned_cols=148 Identities=18% Similarity=0.233 Sum_probs=82.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCce-----------EEeEEEE------------------E
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT-----------RHRILGI------------------C 158 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t-----------~~~~~~~------------------~ 158 (348)
++..|+++|.+|+||||++..|. |.++..+...+... ....... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999986 55554433222100 0000000 0
Q ss_pred eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCC
Q 018949 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
...++.+.++||||..+.....+ ..+ ... .....+|.+++|+|++.+... .... ..+.. .-.+..+|+||+|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm-~el-~~i-~~~~~pd~vlLVvDA~~gq~a-~~~a-~~f~~--~~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALI-EEM-KQI-SNVIHPHEVILVIDGTIGQQA-YNQA-LAFKE--ATPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHH-HHH-HHH-HHHHCCSEEEEEEEGGGGGGH-HHHH-HHHHH--SCTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHH-HHH-HHH-HHhhcCceEEEEEeCCCchhH-HHHH-HHHHh--hCCCeEEEEECCCC
Confidence 11347899999999654322211 111 112 223468999999999875432 2222 22222 22455799999998
Q ss_pred CChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHH
Q 018949 239 IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL 274 (348)
...... ...... ..+ .|+.+++. |+++++|
T Consensus 252 ~~~gG~--~ls~~~-~~g-~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 252 SAKGGG--ALSAVA-ATG-APIKFIGT--GEKIDDI 281 (443)
T ss_dssp CSSHHH--HHHHHH-TTC-CCEEEEEC--SSSTTCE
T ss_pred cccccH--HHHHHH-HHC-CCEEEEEc--CCChHHh
Confidence 754321 122222 233 37777774 7777664
No 220
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.73 E-value=9.4e-09 Score=102.30 Aligned_cols=61 Identities=30% Similarity=0.385 Sum_probs=43.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEE-------eCCCeeEEEEeCCCCchh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGIC-------SGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~-------~~~~~~~~l~DtpG~~~~ 176 (348)
+..+|+|+|.||+|||||+|+|+|..... ..+++|+....+++ ...+..+.++||||+...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 44589999999999999999999987532 34444433322222 235678999999998653
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.66 E-value=7.3e-08 Score=87.69 Aligned_cols=101 Identities=21% Similarity=0.249 Sum_probs=69.8
Q ss_pred EeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHH
Q 018949 168 YDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKK 247 (348)
Q Consensus 168 ~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~ 247 (348)
-..||+... ..+.+...+..+|+|++|+|+..+.......+..++ .++|.++|+||+|+.+....+..
T Consensus 4 ~w~PGhm~k--------a~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~~ 71 (282)
T 1puj_A 4 QWFPGHMAK--------ARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAAVTQQW 71 (282)
T ss_dssp -----CTTH--------HHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCHHHHHHH
T ss_pred cCCchHHHH--------HHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCHHHHHHH
Confidence 356885332 234566778999999999999887654433444444 46899999999999986554444
Q ss_pred HHHHHhcCCCCeEEEecCCCCCCHHHHHHHHHHhC
Q 018949 248 LEWYEKFTDVDEVIPVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 248 ~~~~~~~~~~~~i~~vSA~~g~gi~eL~~~i~~~l 282 (348)
...+.. .+. +++++||+++.|+++|++.+.+.+
T Consensus 72 ~~~~~~-~g~-~~i~iSA~~~~gi~~L~~~i~~~l 104 (282)
T 1puj_A 72 KEHFEN-QGI-RSLSINSVNGQGLNQIVPASKEIL 104 (282)
T ss_dssp HHHHHT-TTC-CEEECCTTTCTTGGGHHHHHHHHH
T ss_pred HHHHHh-cCC-cEEEEECCCcccHHHHHHHHHHHH
Confidence 444433 233 789999999999999999887655
No 222
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.61 E-value=9.7e-08 Score=87.75 Aligned_cols=85 Identities=24% Similarity=0.382 Sum_probs=61.0
Q ss_pred hhccCccEEEEEecCCCCC-ch--HHHHHHHhcccccCCCCEEEEEeccCCCChhh---HHHHHHHHHhcCCCCeEEEec
Q 018949 191 SAGINADCIVVLVDACKAP-ER--IDEILEEGVGDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVS 264 (348)
Q Consensus 191 ~~~~~ad~iv~VvD~~~~~-~~--~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~i~~vS 264 (348)
.++.++|++++|+|++++. .. .+.++ ..+.. .++|+++|+||+|+.+... ..+....+.. .+ .+++++|
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l-~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~-~g-~~~~~~S 149 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNML-VVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRD-AG-YDVLKVS 149 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHH-HHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH-TT-CEEEECC
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHH-HHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHH-CC-CeEEEEE
Confidence 3589999999999998764 22 23333 33444 6799999999999987642 2333333333 33 3899999
Q ss_pred CCCCCCHHHHHHHHHH
Q 018949 265 AKYGHGVEDIRDWILT 280 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~ 280 (348)
|++|.|+++|+..+..
T Consensus 150 A~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 150 AKTGEGIDELVDYLEG 165 (302)
T ss_dssp TTTCTTHHHHHHHTTT
T ss_pred CCCCCCHHHHHhhccC
Confidence 9999999999988754
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.61 E-value=1.4e-08 Score=91.36 Aligned_cols=58 Identities=36% Similarity=0.499 Sum_probs=38.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEEEEeCCCeeEEEEeCCCCchh
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILGICSGPEYQMILYDTPGIIEK 176 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 176 (348)
.+|+++|.+|+|||||+|+|.+.....+.+.+++|+....... +..+.+|||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL---ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC---TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe---CCCEEEEECCCcccC
Confidence 3899999999999999999999887667888888887543222 246899999998653
No 224
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.52 E-value=1.9e-07 Score=88.17 Aligned_cols=91 Identities=23% Similarity=0.238 Sum_probs=60.5
Q ss_pred HHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh----hHHHHHHHHHhcCCC--CeEE
Q 018949 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEVI 261 (348)
Q Consensus 188 ~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~--~~i~ 261 (348)
....+.+.+|++++|+|+++........+.+. ..++|+++|+||+|+.+.. ...+.........+. .+++
T Consensus 62 ~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~----~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~ 137 (368)
T 3h2y_A 62 ILNGIGKSDALVVKIVDIFDFNGSWLPGLHRF----VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVF 137 (368)
T ss_dssp HHHHHHHSCCEEEEEEETTSHHHHCCTTHHHH----SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEE
T ss_pred HHHHHhccCcEEEEEEECCCCcccHHHHHHHH----hCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEE
Confidence 34445668889999999986432111112222 2478999999999997543 233333332333333 3789
Q ss_pred EecCCCCCCHHHHHHHHHHhC
Q 018949 262 PVSAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 262 ~vSA~~g~gi~eL~~~i~~~l 282 (348)
.+||++|.|+++|++.+.+..
T Consensus 138 ~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 138 LISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEeCCCCcCHHHHHhhhhhhc
Confidence 999999999999999998754
No 225
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.49 E-value=2.8e-07 Score=83.08 Aligned_cols=98 Identities=11% Similarity=0.044 Sum_probs=66.4
Q ss_pred HHHHhhccCccEEEEEecCCCCCc-hHHHHHH---Hhcccc--cCCCCEEEEEec-cCCCChhhHHHHHHHHH--hcCCC
Q 018949 187 KNVRSAGINADCIVVLVDACKAPE-RIDEILE---EGVGDH--KDKLPILLVLNK-KDLIKPGEIAKKLEWYE--KFTDV 257 (348)
Q Consensus 187 ~~~~~~~~~ad~iv~VvD~~~~~~-~~~~~~~---~~~~~~--~~~~p~ivv~NK-~Dl~~~~~~~~~~~~~~--~~~~~ 257 (348)
..+..|+..+|++|||||+++... .....+. ..+... ..+.|++|++|| .|++..-...+..+.+. .....
T Consensus 202 plWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~l~r~ 281 (312)
T 3l2o_B 202 PQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHP 281 (312)
T ss_dssp HHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSC
T ss_pred HHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCccCCCc
Confidence 346677899999999999987542 1222221 233221 267999999997 58875433333333322 12345
Q ss_pred CeEEEecCCCCCCHHHHHHHHHHhCCC
Q 018949 258 DEVIPVSAKYGHGVEDIRDWILTKLPL 284 (348)
Q Consensus 258 ~~i~~vSA~~g~gi~eL~~~i~~~l~~ 284 (348)
+.+.+|||.+|+|+.+-++||.+.+..
T Consensus 282 W~Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 282 WLVQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp EEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred EEEEecccCCCcCHHHHHHHHHHHHHh
Confidence 689999999999999999999998854
No 226
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.48 E-value=3.3e-07 Score=86.60 Aligned_cols=91 Identities=23% Similarity=0.199 Sum_probs=62.9
Q ss_pred HHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChh----hHHHHHHHHHhcCCC--CeEEE
Q 018949 189 VRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPG----EIAKKLEWYEKFTDV--DEVIP 262 (348)
Q Consensus 189 ~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~--~~i~~ 262 (348)
...+...++++++|+|+++........+...+ .++|+++|+||+|+.+.. ...+.........+. .+++.
T Consensus 65 L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~ 140 (369)
T 3ec1_A 65 LHRIGESKALVVNIVDIFDFNGSFIPGLPRFA----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCL 140 (369)
T ss_dssp HHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEE
T ss_pred HHHhhccCcEEEEEEECCCCCCchhhHHHHHh----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEE
Confidence 33445788999999999876643333333332 468999999999997642 223333332333343 47899
Q ss_pred ecCCCCCCHHHHHHHHHHhCC
Q 018949 263 VSAKYGHGVEDIRDWILTKLP 283 (348)
Q Consensus 263 vSA~~g~gi~eL~~~i~~~l~ 283 (348)
+||++|.|+++|++.+.+...
T Consensus 141 iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 141 VSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp CBTTTTBTHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHhhcc
Confidence 999999999999999987653
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.44 E-value=3.8e-07 Score=87.56 Aligned_cols=145 Identities=19% Similarity=0.231 Sum_probs=78.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHh------CCceeeecCCC----------------CceEEeEE-----------E--EEe
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKP----------------QTTRHRIL-----------G--ICS 159 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~----------------~~t~~~~~-----------~--~~~ 159 (348)
+..|+++|.+|+||||++..|. |.++..+...+ +....... . ...
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 4579999999999999999986 44443322111 11000000 0 011
Q ss_pred CCCeeEEEEeCCCCch--hhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccC
Q 018949 160 GPEYQMILYDTPGIIE--KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 160 ~~~~~~~l~DtpG~~~--~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~D 237 (348)
..++.+.++||||..+ .....+ ..+ ....... .+|.+++|+|++.+... .. ....+.. .-.+..+|+||+|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm-~el-~~i~~~~-~pd~vlLVlDa~~gq~a-~~-~a~~f~~--~~~~~gVIlTKlD 249 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLL-EEM-KEMYDVL-KPDDVILVIDASIGQKA-YD-LASRFHQ--ASPIGSVIITKMD 249 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHH-HHH-HHHHHHH-CCSEEEEEEEGGGGGGG-HH-HHHHHHH--HCSSEEEEEECGG
T ss_pred hcCCCEEEEECCCCccccCCHHHH-HHH-HHHHHhh-CCcceEEEEeCccchHH-HH-HHHHHhc--ccCCcEEEEeccc
Confidence 2357899999999643 222211 111 1122222 56899999999875432 22 2222222 2245789999999
Q ss_pred CCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHH
Q 018949 238 LIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVE 272 (348)
Q Consensus 238 l~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~ 272 (348)
....... ....... .+ .|+.+++. |++++
T Consensus 250 ~~a~~G~--als~~~~-~g-~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 250 GTAKGGG--ALSAVVA-TG-ATIKFIGT--GEKID 278 (433)
T ss_dssp GCSCHHH--HHHHHHH-HT-CEEEEEEC--CSSSS
T ss_pred ccccchH--HHHHHHH-HC-CCEEEEEC--CCChH
Confidence 8643221 1222222 22 37777775 66653
No 228
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.39 E-value=1.4e-06 Score=87.61 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=43.4
Q ss_pred eeEEEEeCCCCchhhhhh----hHHHHHHHHHhhccC-ccEEEEEecCCCCC-chHHHHHHHhcccccCCCCEEEEEecc
Q 018949 163 YQMILYDTPGIIEKKIHM----LDSMMMKNVRSAGIN-ADCIVVLVDACKAP-ERIDEILEEGVGDHKDKLPILLVLNKK 236 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~----l~~~~~~~~~~~~~~-ad~iv~VvD~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~NK~ 236 (348)
..+.++|.||+....... ........+..++.. ..++++++++.... ......+...+.. .+.+.|+|+||.
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~--~g~rtI~VlTK~ 224 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP--EGDRTIGILTKP 224 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS--SCCSEEEEEECG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh--cCCceEEEecch
Confidence 458999999976533222 223344445554544 35666666655433 2222334444444 568999999999
Q ss_pred CCCChh
Q 018949 237 DLIKPG 242 (348)
Q Consensus 237 Dl~~~~ 242 (348)
|+....
T Consensus 225 Dlv~~g 230 (608)
T 3szr_A 225 DLVDKG 230 (608)
T ss_dssp GGSSSS
T ss_pred hhcCcc
Confidence 998543
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.34 E-value=3.1e-07 Score=82.56 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=61.5
Q ss_pred HHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCChhhHHHHHHHHHhcCCCCeEEEecCCC
Q 018949 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIKPGEIAKKLEWYEKFTDVDEVIPVSAKY 267 (348)
Q Consensus 188 ~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~ 267 (348)
.+...+..+|++++|+|+..+.......+. ++ ++|.++|+||+|+.+..........+... +. ++ .+||++
T Consensus 14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-----~k~~iivlNK~DL~~~~~~~~~~~~~~~~-g~-~v-~iSa~~ 84 (262)
T 3cnl_A 14 QIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-----RKETIILLNKVDIADEKTTKKWVEFFKKQ-GK-RV-ITTHKG 84 (262)
T ss_dssp HHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-----TSEEEEEEECGGGSCHHHHHHHHHHHHHT-TC-CE-EECCTT
T ss_pred HHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-----CCCcEEEEECccCCCHHHHHHHHHHHHHc-CC-eE-EEECCC
Confidence 445567999999999999876643221111 11 68999999999999865555545555442 33 57 999999
Q ss_pred CCCHHHHHHHHHHh
Q 018949 268 GHGVEDIRDWILTK 281 (348)
Q Consensus 268 g~gi~eL~~~i~~~ 281 (348)
|.|+++|++.+...
T Consensus 85 ~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 85 EPRKVLLKKLSFDR 98 (262)
T ss_dssp SCHHHHHHHHCCCT
T ss_pred CcCHHHHHHHHHHh
Confidence 99999999887654
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.31 E-value=3e-06 Score=77.54 Aligned_cols=146 Identities=18% Similarity=0.238 Sum_probs=79.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCce--------------EEeEEE-------------E--Ee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT--------------RHRILG-------------I--CS 159 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t--------------~~~~~~-------------~--~~ 159 (348)
...|+++|.+|+||||++..+. |.+...+...+... ...... . ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4479999999999999999886 44444332221100 000000 0 01
Q ss_pred CCCeeEEEEeCCCCch--hhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEecc
Q 018949 160 GPEYQMILYDTPGIIE--KKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKK 236 (348)
Q Consensus 160 ~~~~~~~l~DtpG~~~--~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~ 236 (348)
..++.+.++||||..+ .... +-..+ ... .....+|.+++|+|+..+. ...... ..+. ...| ..+|+||+
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~-l~~el-~~i-~~~~~~d~vllVvda~~g~-~~~~~~-~~~~---~~~~i~gvVlnk~ 249 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAA-LLEEM-KNI-YEAIKPDEVTLVIDASIGQ-KAYDLA-SKFN---QASKIGTIIITKM 249 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHH-HHHHH-HHH-HHHHCCSEEEEEEEGGGGG-GHHHHH-HHHH---HTCTTEEEEEECG
T ss_pred hCCCCEEEEeCCCCcccccHHH-HHHHH-HHH-HHHhcCCEEEEEeeCCchH-HHHHHH-HHHH---hhCCCCEEEEeCC
Confidence 1567899999999654 2111 11111 111 1234789999999997542 222222 2222 2356 67899999
Q ss_pred CCCChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHHH
Q 018949 237 DLIKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVEDI 274 (348)
Q Consensus 237 Dl~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~eL 274 (348)
|...... .... +....+ .|+..++ +|+++++|
T Consensus 250 D~~~~~g--~~~~-~~~~~~-~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 250 DGTAKGG--GALS-AVAATG-ATIKFIG--TGEKIDEL 281 (297)
T ss_dssp GGCTTHH--HHHH-HHHTTT-CCEEEEE--CSSSTTCE
T ss_pred CCCcchH--HHHH-HHHHHC-cCEEEEe--CCCChhhc
Confidence 9764322 1222 223333 3677765 67776553
No 231
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.11 E-value=5.8e-06 Score=79.57 Aligned_cols=64 Identities=23% Similarity=0.257 Sum_probs=43.3
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCC---------------ceeeecCCCCceEEeEEEEEeC-----------CCeeE
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQ---------------KLSIVTNKPQTTRHRILGICSG-----------PEYQM 165 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~---------------~~~~~~~~~~~t~~~~~~~~~~-----------~~~~~ 165 (348)
+.+...|+|+|.+++|||||+|.|+|. +....+.. ++|+....+++.+ ....+
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~-~t~~~~T~GIw~~~~p~~~~~~~~~~~~v 142 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR-GGSERETTGIQIWSEIFLINKPDGKKVAV 142 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSC-CSSCCCCCEEEEESSCEEEECSSSCEEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCC-CCCCCceeEEEEecCccccccCCCCcceE
Confidence 345668999999999999999999864 22222222 2444444444432 24679
Q ss_pred EEEeCCCCchh
Q 018949 166 ILYDTPGIIEK 176 (348)
Q Consensus 166 ~l~DtpG~~~~ 176 (348)
.++||||+.+.
T Consensus 143 vllDTeG~~~~ 153 (447)
T 3q5d_A 143 LLMDTQGTFDS 153 (447)
T ss_dssp EEEEEECCCSS
T ss_pred EEEcCCccccc
Confidence 99999998653
No 232
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.02 E-value=2.3e-05 Score=75.33 Aligned_cols=118 Identities=22% Similarity=0.212 Sum_probs=67.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHh-------CCceeeecCCCCceE--------------EeEEE---------------EE
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI-------GQKLSIVTNKPQTTR--------------HRILG---------------IC 158 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~-------~~~~~~~~~~~~~t~--------------~~~~~---------------~~ 158 (348)
...|+++|.+|+||||++..|. |.++..+...+.... ..... ..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 4479999999999999999986 666554433321110 00000 00
Q ss_pred eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccC
Q 018949 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKD 237 (348)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~D 237 (348)
...++.++++||||..+.... +...+ ..+ .....+|.+++|+|+..+. ........+ . ...+ .-+|+||+|
T Consensus 180 ~~~~~D~VIIDTpG~l~~~~~-l~~~L-~~~-~~~~~p~~vllVvda~~g~-~~~~~~~~f-~---~~l~i~gvVlnK~D 251 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVDEA-MMDEI-KQV-HASINPVETLFVVDAMTGQ-DAANTAKAF-N---EALPLTGVVLTKVD 251 (433)
T ss_dssp HHTTCSEEEEECCCCCTTCHH-HHHHH-HHH-HHHSCCSEEEEEEETTBCT-THHHHHHHH-H---HHSCCCCEEEECTT
T ss_pred HhCCCCEEEEECCCcccccHH-HHHHH-HHH-HHhhcCcceeEEeecchhH-HHHHHHHHH-h---ccCCCeEEEEecCC
Confidence 124678999999996442211 11111 111 2245789999999998653 222222222 1 2244 347999999
Q ss_pred CCC
Q 018949 238 LIK 240 (348)
Q Consensus 238 l~~ 240 (348)
...
T Consensus 252 ~~~ 254 (433)
T 2xxa_A 252 GDA 254 (433)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
No 233
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.81 E-value=1.2e-05 Score=73.61 Aligned_cols=83 Identities=20% Similarity=0.225 Sum_probs=57.7
Q ss_pred hccCccEEEEEecCCCCCchHHHHHHHhccc-ccCCCCEEEEEeccCCCChhh----HHHHHHHHHhcCCCCeEEEecCC
Q 018949 192 AGINADCIVVLVDACKAPERIDEILEEGVGD-HKDKLPILLVLNKKDLIKPGE----IAKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 192 ~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~NK~Dl~~~~~----~~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
.+.++|.+++|+|+..+..... .+.+++.. ...++|.++|+||+|+.+... +......+... +. +++.+||.
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~-g~-~v~~~sa~ 159 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI-GY-DVYLTSSK 159 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH-TC-CEEECCHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC-CC-eEEEEecC
Confidence 4789999999999987664433 33333321 116789999999999987644 34444444433 33 78999999
Q ss_pred CCCCHHHHHHH
Q 018949 267 YGHGVEDIRDW 277 (348)
Q Consensus 267 ~g~gi~eL~~~ 277 (348)
+|.|+++|+..
T Consensus 160 ~~~g~~~L~~~ 170 (307)
T 1t9h_A 160 DQDSLADIIPH 170 (307)
T ss_dssp HHTTCTTTGGG
T ss_pred CCCCHHHHHhh
Confidence 99998877654
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.75 E-value=6.8e-05 Score=69.41 Aligned_cols=147 Identities=21% Similarity=0.220 Sum_probs=75.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC------ceeeecCCCCc-e----------EEeEEEEE------------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ------KLSIVTNKPQT-T----------RHRILGIC------------------ 158 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~------~~~~~~~~~~~-t----------~~~~~~~~------------------ 158 (348)
+...|+++|++|+||||+++.|.+. ++......... . +.....+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 3448999999999999999998742 22221111000 0 00000000
Q ss_pred eCCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCC
Q 018949 159 SGPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
...+..+.++||+|..+.....+... .. .... -.+|-.++++|+..+. ........+.+. .+ .-++++||.|.
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL-~~-i~ra-l~~de~llvLDa~t~~-~~~~~~~~~~~~--~~-it~iilTKlD~ 280 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEM-KK-IARV-TKPNLVIFVGDALAGN-AIVEQARQFNEA--VK-IDGIILTKLDA 280 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHH-HH-HHHH-HCCSEEEEEEEGGGTT-HHHHHHHHHHHH--SC-CCEEEEECGGG
T ss_pred HhccchhhHHhhccchhHHHHHHHHH-HH-HHHH-hcCCCCEEEEecHHHH-HHHHHHHHHHHh--cC-CCEEEEeCcCC
Confidence 01234578899999754332222221 11 1111 2478899999987663 222222222222 12 33788999997
Q ss_pred CChhhHHHHHHHHHhcCCCCeEEEecCCCCCCHHH
Q 018949 239 IKPGEIAKKLEWYEKFTDVDEVIPVSAKYGHGVED 273 (348)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g~gi~e 273 (348)
...-- ......... + .|+..++ +|+++++
T Consensus 281 ~a~~G--~~l~~~~~~-~-~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 281 DARGG--AALSISYVI-D-APILFVG--VGQGYDD 309 (328)
T ss_dssp CSCCH--HHHHHHHHH-T-CCEEEEE--CSSSTTC
T ss_pred ccchh--HHHHHHHHH-C-CCEEEEe--CCCCccc
Confidence 43211 112222222 2 3677776 7776654
No 235
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.68 E-value=0.0003 Score=68.26 Aligned_cols=122 Identities=16% Similarity=0.245 Sum_probs=63.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC------CceeeecCCCCce-----------EEeEEEEE------------------
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTT-----------RHRILGIC------------------ 158 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~~t-----------~~~~~~~~------------------ 158 (348)
+...|+|+|.+|+|||||++.|.+ .++.......... +..+..+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 344799999999999999999864 2232221111100 00000110
Q ss_pred eCCCeeEEEEeCCCCchhhhhhhHHH--HHHHHHhhc-cCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEec
Q 018949 159 SGPEYQMILYDTPGIIEKKIHMLDSM--MMKNVRSAG-INADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (348)
Q Consensus 159 ~~~~~~~~l~DtpG~~~~~~~~l~~~--~~~~~~~~~-~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK 235 (348)
...++.+.++||+|..+.....+... ....+.... ...+-+++|+|++.+.... .....+... .++. .+|+||
T Consensus 372 ~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al-~~ak~f~~~--~~it-gvIlTK 447 (503)
T 2yhs_A 372 KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV-SQAKLFHEA--VGLT-GITLTK 447 (503)
T ss_dssp HHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH-HHHHHHHHH--TCCS-EEEEEC
T ss_pred HhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH-HHHHHHHhh--cCCC-EEEEEc
Confidence 01345789999999754332222211 111111111 2356789999988663222 222222222 2333 578999
Q ss_pred cCCC
Q 018949 236 KDLI 239 (348)
Q Consensus 236 ~Dl~ 239 (348)
.|-.
T Consensus 448 LD~t 451 (503)
T 2yhs_A 448 LDGT 451 (503)
T ss_dssp GGGC
T ss_pred CCCc
Confidence 9964
No 236
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.64 E-value=0.00036 Score=63.82 Aligned_cols=121 Identities=19% Similarity=0.198 Sum_probs=63.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC------CceeeecCCCCc-e----------EEeEEEEEe------------------
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQT-T----------RHRILGICS------------------ 159 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~~-t----------~~~~~~~~~------------------ 159 (348)
...|+++|++|+|||||++.+.+ .++......... . +.....+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~ 181 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMK 181 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 34899999999999999999863 222221111000 0 000000100
Q ss_pred CCCeeEEEEeCCCCchhhhhh---hHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEecc
Q 018949 160 GPEYQMILYDTPGIIEKKIHM---LDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKK 236 (348)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~---l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~ 236 (348)
..+..+.++||+|..+..... +...-....+.....++.+++++|++.+... ...+....+. .+. .++++||.
T Consensus 182 ~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~-~~~~~~~~~~--~~~-t~iivTh~ 257 (304)
T 1rj9_A 182 ARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG-LEQAKKFHEA--VGL-TGVIVTKL 257 (304)
T ss_dssp HHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH-HHHHHHHHHH--HCC-SEEEEECT
T ss_pred hCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH-HHHHHHHHHH--cCC-cEEEEECC
Confidence 113457899999975432222 2211111122234567888999998766432 2333333222 123 47889999
Q ss_pred CCC
Q 018949 237 DLI 239 (348)
Q Consensus 237 Dl~ 239 (348)
|..
T Consensus 258 d~~ 260 (304)
T 1rj9_A 258 DGT 260 (304)
T ss_dssp TSS
T ss_pred ccc
Confidence 865
No 237
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.58 E-value=0.00086 Score=61.76 Aligned_cols=120 Identities=18% Similarity=0.279 Sum_probs=62.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCc--------e------EEeEEEEE----------------
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQT--------T------RHRILGIC---------------- 158 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~--------t------~~~~~~~~---------------- 158 (348)
...|+++|.+|+||||++..|. +.++..+...+.. + +... .++
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l-~vip~~~~~~~p~~~~~~~ 183 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKV-DLVKANKLNADPASVVFDA 183 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTE-EEECCSSTTCCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCc-eEEeCCCCCCCHHHHHHHH
Confidence 3479999999999999999875 2333322111100 0 0001 111
Q ss_pred ----eCCCeeEEEEeCCCCchhhhhhhHHHH-HHHHHh-h-ccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EE
Q 018949 159 ----SGPEYQMILYDTPGIIEKKIHMLDSMM-MKNVRS-A-GINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-IL 230 (348)
Q Consensus 159 ----~~~~~~~~l~DtpG~~~~~~~~l~~~~-~~~~~~-~-~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~i 230 (348)
...++.++++||||..+.....+.... ...+.. . -..+|.+++|+|+..+ ........... ...+ .=
T Consensus 184 l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~-~~~l~~~~~~~----~~~~i~G 258 (320)
T 1zu4_A 184 IKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG-QNGVIQAEEFS----KVADVSG 258 (320)
T ss_dssp HHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT-HHHHHHHHHHT----TTSCCCE
T ss_pred HHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc-HHHHHHHHHHh----hcCCCcE
Confidence 023568999999996543211111110 001111 1 1347899999999854 22222222221 2233 34
Q ss_pred EEEeccCCCC
Q 018949 231 LVLNKKDLIK 240 (348)
Q Consensus 231 vv~NK~Dl~~ 240 (348)
+|+||.|...
T Consensus 259 vVltk~d~~~ 268 (320)
T 1zu4_A 259 IILTKMDSTS 268 (320)
T ss_dssp EEEECGGGCS
T ss_pred EEEeCCCCCC
Confidence 7899999754
No 238
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.53 E-value=8.3e-05 Score=67.84 Aligned_cols=117 Identities=15% Similarity=0.203 Sum_probs=62.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHh-------CCceeeecCCCCc-eEE------------eE-E---------EEEeCCCee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI-------GQKLSIVTNKPQT-TRH------------RI-L---------GICSGPEYQ 164 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~-------~~~~~~~~~~~~~-t~~------------~~-~---------~~~~~~~~~ 164 (348)
...|+++|++|+||||++..|. |.++..+...+.. +.. .. . .+....+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 4489999999999999999875 2233322221110 000 00 0 000113567
Q ss_pred EEEEeCCCCchhhhhhhHHHHHHHHHhhcc--CccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 165 MILYDTPGIIEKKIHMLDSMMMKNVRSAGI--NADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 165 ~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~--~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
+.++||||........+ ......+. .++.+++|+|++........ +...+.. .+ ..-+|+||.|...
T Consensus 185 lvIiDT~G~~~~~~~~~-----~el~~~l~~~~~~~~~lVl~at~~~~~~~~-~~~~~~~--l~-~~giVltk~D~~~ 253 (296)
T 2px0_A 185 HVFVDTAGRNFKDPQYI-----DELKETIPFESSIQSFLVLSATAKYEDMKH-IVKRFSS--VP-VNQYIFTKIDETT 253 (296)
T ss_dssp EEEEECCCCCTTSHHHH-----HHHHHHSCCCTTEEEEEEEETTBCHHHHHH-HTTTTSS--SC-CCEEEEECTTTCS
T ss_pred EEEEeCCCCChhhHHHH-----HHHHHHHhhcCCCeEEEEEECCCCHHHHHH-HHHHHhc--CC-CCEEEEeCCCccc
Confidence 99999999753221111 22222232 46788999998765333222 2222221 12 2346779999764
No 239
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.45 E-value=0.00036 Score=65.14 Aligned_cols=80 Identities=23% Similarity=0.372 Sum_probs=52.9
Q ss_pred ccCccEEEEEecCCCCCchHHHHHHHhc---ccccCCCCEEEEEeccCCCChhh---HHHHHHHHHhcCCCCeEEEecCC
Q 018949 193 GINADCIVVLVDACKAPERIDEILEEGV---GDHKDKLPILLVLNKKDLIKPGE---IAKKLEWYEKFTDVDEVIPVSAK 266 (348)
Q Consensus 193 ~~~ad~iv~VvD~~~~~~~~~~~~~~~~---~~~~~~~p~ivv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~i~~vSA~ 266 (348)
..++|.+++| |+..+.... ..+.+++ .. .++|.++|+||+|+.+... +......+.. .+. +++.+||.
T Consensus 128 ~anvD~v~iv-~a~~P~~~~-~~i~r~L~~a~~--~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~-~G~-~v~~~Sa~ 201 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSL-NIIDRYLVGCET--LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRN-IGY-RVLMVSSH 201 (358)
T ss_dssp EECCCEEEEE-EESTTTCCH-HHHHHHHHHHHH--HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHT-TTC-CEEECBTT
T ss_pred HhcCCEEEEE-EeCCCCCCH-HHHHHHHHHHHh--cCCCEEEEEECccCCCchhHHHHHHHHHHHHh-CCC-cEEEEecC
Confidence 5789999976 444444222 2233332 22 5688899999999987654 3333444433 333 68999999
Q ss_pred CCCCHHHHHHHH
Q 018949 267 YGHGVEDIRDWI 278 (348)
Q Consensus 267 ~g~gi~eL~~~i 278 (348)
++.|+++|...+
T Consensus 202 ~~~gl~~L~~~~ 213 (358)
T 2rcn_A 202 TQDGLKPLEEAL 213 (358)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHHhc
Confidence 999999988765
No 240
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.35 E-value=5e-05 Score=69.56 Aligned_cols=55 Identities=29% Similarity=0.315 Sum_probs=31.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCceeeecCCC-------CceEEeEEEEEeCCCeeEEEEeCCCCch
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKLSIVTNKP-------QTTRHRILGICSGPEYQMILYDTPGIIE 175 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 175 (348)
.++|+|++|||||||+|+|.+.......... ++|..... .... .-.++||||+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~~--~g~v~dtpg~~~ 236 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHTS--GGLVADTPGFSS 236 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEET--TEEEESSCSCSS
T ss_pred EEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhcC--CEEEecCCCccc
Confidence 7999999999999999999986533222111 23332211 1111 247899999753
No 241
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.30 E-value=0.00038 Score=59.17 Aligned_cols=112 Identities=16% Similarity=0.222 Sum_probs=66.2
Q ss_pred EEEEE-cCCCCChHHHHHHHh------CCceeeecCCCCceEEe-------EEEEEe-------------CCCeeEEEEe
Q 018949 117 YVAVL-GKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHR-------ILGICS-------------GPEYQMILYD 169 (348)
Q Consensus 117 ~v~i~-G~~~~GKSsLin~l~------~~~~~~~~~~~~~t~~~-------~~~~~~-------------~~~~~~~l~D 169 (348)
.|+|. +..|+||||+.-.|. |.+...+...+..+... ...++. ...+.+.++|
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD 82 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVD 82 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEEE
Confidence 46777 578999999987653 44444332222111000 000111 1347899999
Q ss_pred CCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccc---cCCCCEEEEEeccCCCC
Q 018949 170 TPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH---KDKLPILLVLNKKDLIK 240 (348)
Q Consensus 170 tpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~NK~Dl~~ 240 (348)
||+.... .....+..+|.+++++..+... .....+.+.++.. ..+.++.+|+|++|...
T Consensus 83 ~~~~~~~-----------~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 83 GAGSLSV-----------ITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp CCSSSSH-----------HHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCCCCH-----------HHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 9985321 1223356799999999987655 5445555555432 23567899999999643
No 242
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.20 E-value=0.0012 Score=63.04 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=62.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHh------CCceeeecCCCCce--------------EEeEEE------------E---Ee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI------GQKLSIVTNKPQTT--------------RHRILG------------I---CS 159 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~------~~~~~~~~~~~~~t--------------~~~~~~------------~---~~ 159 (348)
...|+++|.+|+||||++..|. +.++..+...+... ...... . ..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~ 177 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 177 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999999875 22332221111100 000000 0 01
Q ss_pred CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCC
Q 018949 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDL 238 (348)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl 238 (348)
..++.+.++||||..+.....+.. + ... .....+|.+++|+|+..+. .......... ...+ .-+|+||.|.
T Consensus 178 ~~~~DvVIIDTaG~l~~d~~l~~e-l-~~i-~~~~~pd~vlLVvDa~tgq-~av~~a~~f~----~~l~i~GVIlTKlD~ 249 (425)
T 2ffh_A 178 LEARDLILVDTAGRLQIDEPLMGE-L-ARL-KEVLGPDEVLLVLDAMTGQ-EALSVARAFD----EKVGVTGLVLTKLDG 249 (425)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHH-H-HHH-HHHHCCSEEEEEEEGGGTT-HHHHHHHHHH----HHTCCCEEEEESGGG
T ss_pred HCCCCEEEEcCCCcccccHHHHHH-H-HHh-hhccCCceEEEEEeccchH-HHHHHHHHHH----hcCCceEEEEeCcCC
Confidence 145679999999964322111111 1 111 1123688999999997652 2222222221 1233 4678999997
Q ss_pred CC
Q 018949 239 IK 240 (348)
Q Consensus 239 ~~ 240 (348)
..
T Consensus 250 ~~ 251 (425)
T 2ffh_A 250 DA 251 (425)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 243
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.19 E-value=0.0017 Score=59.37 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.4
Q ss_pred ccEEEEEcCCCCChHHHHHHHh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~ 136 (348)
...|+++|++|+||||++..|.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 3479999999999999999875
No 244
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.12 E-value=0.0026 Score=58.36 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.+.++|+|+.|+|||||+|.+++.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 347999999999999999999864
No 245
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.11 E-value=0.00027 Score=66.01 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCce
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKL 140 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~ 140 (348)
.++|+|++|||||||+|.|.|...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 799999999999999999998654
No 246
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.01 E-value=0.00086 Score=61.21 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|++|+|||||+|+|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 79999999999999999998 43
No 247
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.94 E-value=0.0045 Score=56.42 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...++++|++|+||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999864
No 248
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.91 E-value=0.0007 Score=61.76 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCce
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKL 140 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~ 140 (348)
.++++|++|+|||||+|+|.|...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 799999999999999999998653
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.88 E-value=0.00023 Score=60.80 Aligned_cols=43 Identities=26% Similarity=0.360 Sum_probs=29.6
Q ss_pred CCCccEEEEEcCCCCChHHHHHHHhCCce-eeecCCCCceEEeE
Q 018949 112 NHKSGYVAVLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHRI 154 (348)
Q Consensus 112 ~~~~~~v~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~~t~~~~ 154 (348)
..+...|+|+|++|+|||||+++|.+... ......+.||+...
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~ 59 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPR 59 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCC
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCc
Confidence 34555799999999999999999986432 12334455555443
No 250
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.87 E-value=0.011 Score=55.08 Aligned_cols=122 Identities=16% Similarity=0.134 Sum_probs=63.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC------CceeeecCCCCc--------e---EEeEEEEEe------------------
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQT--------T---RHRILGICS------------------ 159 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~~--------t---~~~~~~~~~------------------ 159 (348)
.-.|+++|++|+|||||++.|.+ .++......... + +..+..+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~ 236 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 236 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHH
Confidence 34799999999999999999864 222221111100 0 000001110
Q ss_pred -CCCeeEEEEeCCCCchhhhh---hhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEec
Q 018949 160 -GPEYQMILYDTPGIIEKKIH---MLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNK 235 (348)
Q Consensus 160 -~~~~~~~l~DtpG~~~~~~~---~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK 235 (348)
..+....++||.|+.+.... .+...-....+......+-+++|+|++.+..... ....+... .+. -++++||
T Consensus 237 ~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~-~~~~~~~~--~g~-t~iiiTh 312 (359)
T 2og2_A 237 KEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP-QAREFNEV--VGI-TGLILTK 312 (359)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH-HHHHHHHH--TCC-CEEEEES
T ss_pred HhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH-HHHHHHHh--cCC-eEEEEec
Confidence 01234688999998543222 2221111112223456787889999766554332 22222222 233 3678899
Q ss_pred cCCCC
Q 018949 236 KDLIK 240 (348)
Q Consensus 236 ~Dl~~ 240 (348)
.|-..
T Consensus 313 lD~~~ 317 (359)
T 2og2_A 313 LDGSA 317 (359)
T ss_dssp CTTCS
T ss_pred Ccccc
Confidence 88653
No 251
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.71 E-value=0.0074 Score=54.74 Aligned_cols=118 Identities=18% Similarity=0.222 Sum_probs=60.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC------CceeeecCCCCce-----------EEeEEEE------------------Ee
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG------QKLSIVTNKPQTT-----------RHRILGI------------------CS 159 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~~t-----------~~~~~~~------------------~~ 159 (348)
...++++|.+|+||||++..+.+ .++..+...+... ....... ..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~ 177 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 177 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34789999999999999998753 2222211111000 0000000 00
Q ss_pred CCCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCC-EEEEEeccCC
Q 018949 160 GPEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLP-ILLVLNKKDL 238 (348)
Q Consensus 160 ~~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~NK~Dl 238 (348)
..++.+.++||||........+.. +. ..... -.+|.+++|+|+... ........... ...+ .-+|+||+|.
T Consensus 178 ~~~~D~viiDtpp~~~~d~~~~~~-l~-~~~~~-~~~~~~~lv~~~~~~-~~~~~~~~~~~----~~~~i~givlnk~d~ 249 (295)
T 1ls1_A 178 LEARDLILVDTAGRLQIDEPLMGE-LA-RLKEV-LGPDEVLLVLDAMTG-QEALSVARAFD----EKVGVTGLVLTKLDG 249 (295)
T ss_dssp HHTCCEEEEECCCCSSCCHHHHHH-HH-HHHHH-HCCSEEEEEEEGGGT-HHHHHHHHHHH----HHTCCCEEEEECGGG
T ss_pred hCCCCEEEEeCCCCccccHHHHHH-HH-HHhhh-cCCCEEEEEEeCCCc-HHHHHHHHHHh----hcCCCCEEEEECCCC
Confidence 134679999999854322111211 11 11111 257888999998753 22222222111 1233 4578999997
Q ss_pred CC
Q 018949 239 IK 240 (348)
Q Consensus 239 ~~ 240 (348)
..
T Consensus 250 ~~ 251 (295)
T 1ls1_A 250 DA 251 (295)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 252
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.70 E-value=0.0043 Score=53.17 Aligned_cols=111 Identities=17% Similarity=0.192 Sum_probs=62.6
Q ss_pred EEEEE-cCCCCChHHHHHHHh------CCceeeecCCCCceEEeE-------EEEEe-------CCCeeEEEEeCCCC-c
Q 018949 117 YVAVL-GKPNVGKSTLANQMI------GQKLSIVTNKPQTTRHRI-------LGICS-------GPEYQMILYDTPGI-I 174 (348)
Q Consensus 117 ~v~i~-G~~~~GKSsLin~l~------~~~~~~~~~~~~~t~~~~-------~~~~~-------~~~~~~~l~DtpG~-~ 174 (348)
.|+|+ +..|+||||+.-.|. | +...+...+..+.... ..++. ...+.+.++|||+. .
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~~ 80 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPE 80 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCCS
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCcC
Confidence 46665 578999999987763 4 4443322221110000 00110 13467999999984 3
Q ss_pred hhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 175 EKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 175 ~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
... ....+..+|.+|+++..+.........+.+.++.. .+.++.+|+|++|...
T Consensus 81 ~~~-----------~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 81 DED-----------LEALADGCDLLVIPSTPDALALDALMLTIETLQKL-GNNRFRILLTIIPPYP 134 (209)
T ss_dssp SSH-----------HHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHT-CSSSEEEEECSBCCTT
T ss_pred cHH-----------HHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhc-cCCCEEEEEEecCCcc
Confidence 211 22335689999999987643322222333333332 2567889999999764
No 253
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.66 E-value=0.00018 Score=69.95 Aligned_cols=102 Identities=13% Similarity=0.107 Sum_probs=54.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCceeeecCCCCceEEeEEE----EEeCCCeeEEEEeCCCCchhhhhhhHHH---HHH
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQKLSIVTNKPQTTRHRILG----ICSGPEYQMILYDTPGIIEKKIHMLDSM---MMK 187 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~l~DtpG~~~~~~~~l~~~---~~~ 187 (348)
...|+++|.+|+||||+.++|...-.. ... .|...... ..........+||+.| +..+...... ...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~---~~~-~t~~~~~d~~r~~~~g~~~~~~ifd~~g--~~~~r~re~~~~~~l~ 112 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF---IGV-PTREFNVGQYRRDMVKTYKSFEFFLPDN--EEGLKIRKQCALAALN 112 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH---TTC-CEEEEEHHHHHHHHHCSCCCGGGGCTTC--HHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc---cCC-CceEEecchhhhhhccCCCcccccCCCC--HHHHHHHHHHHHHHHH
Confidence 347999999999999999998653211 000 11111000 0001112235677777 3222111111 122
Q ss_pred HHHhhccCccEEEEEecCCCCCchHHHHHHHhccc
Q 018949 188 NVRSAGINADCIVVLVDACKAPERIDEILEEGVGD 222 (348)
Q Consensus 188 ~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~ 222 (348)
....++..+.+.++|+|+++........+...++.
T Consensus 113 ~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 113 DVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQ 147 (469)
T ss_dssp HHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHh
Confidence 33455666778899999988765555555555544
No 254
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.62 E-value=0.0058 Score=55.46 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=39.2
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccc--cCCCCEE-EEEeccCC
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDH--KDKLPIL-LVLNKKDL 238 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~--~~~~p~i-vv~NK~Dl 238 (348)
.+.++++|||+..... .+...+..+|.+|+|+..+.........+.+.++.. ..+.+++ +|+|+++.
T Consensus 156 ~yD~ViiD~p~~~~~~----------~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG----------GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCG----------GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchH----------HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 4679999998743211 011235789999999987533222222233333322 1455655 89999994
No 255
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.46 E-value=0.0095 Score=57.08 Aligned_cols=23 Identities=35% Similarity=0.323 Sum_probs=19.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~ 136 (348)
....|+|+|..++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 44579999999999999999664
No 256
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.42 E-value=0.0013 Score=55.13 Aligned_cols=22 Identities=32% Similarity=0.723 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+++|+|++|+|||||++.+.|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 257
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.40 E-value=0.0016 Score=54.45 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..++|+|++|+|||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 37999999999999999999864
No 258
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.21 E-value=0.0017 Score=55.19 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|++|+|||||++.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6999999999999999999863
No 259
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.17 E-value=0.00093 Score=56.51 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=25.3
Q ss_pred EEEEcCCCCChHHHHHHHhCCce-eeecCCCCceEEe
Q 018949 118 VAVLGKPNVGKSTLANQMIGQKL-SIVTNKPQTTRHR 153 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~~~-~~~~~~~~~t~~~ 153 (348)
|+|+|++|||||||+++|+.... ......+.||+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 89999999999999999975421 1123455555544
No 260
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.07 E-value=0.0037 Score=52.31 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..|+++|++|+|||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36999999999999999999885
No 261
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.05 E-value=0.0026 Score=54.35 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|++|+|||||++.+.|.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7999999999999999999874
No 262
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.03 E-value=0.0032 Score=53.28 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|++|+|||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 6999999999999999999874
No 263
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.02 E-value=0.0032 Score=53.82 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
...|+|+|++|+|||||++.|.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998874
No 264
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.00 E-value=0.0026 Score=53.37 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|++|+|||||++.|.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999864
No 265
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.96 E-value=0.0037 Score=54.77 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|--
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999999999999853
No 266
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.95 E-value=0.003 Score=55.07 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=39.7
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccC
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKD 237 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~D 237 (348)
..+.++++|||+..... ....+..+|.+++|++.+.........+.+.+... .-..+.+|+||.+
T Consensus 130 ~~yD~viiD~pp~~~~~-----------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~-~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEHL-----------TRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDL-GIKKVRYVINKVR 194 (254)
T ss_dssp TCCSEEEEEECTTCTTC-----------CHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHH-TCSCEEEEEEEEC
T ss_pred CCCCEEEEeCCCcccHH-----------HHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHc-CCccEEEEEeCCC
Confidence 45789999998743211 12235789999999987543222223333344442 2245789999998
No 267
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.93 E-value=0.0039 Score=54.17 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
No 268
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.91 E-value=0.0032 Score=54.41 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..++|+|++|+|||||++.|.|.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36999999999999999999874
No 269
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.85 E-value=0.004 Score=53.96 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 79999999999999999998743
No 270
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.85 E-value=0.1 Score=45.12 Aligned_cols=68 Identities=16% Similarity=0.101 Sum_probs=41.9
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhccccc-CCCCEEEEEeccCCCCh
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-DKLPILLVLNKKDLIKP 241 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~NK~Dl~~~ 241 (348)
+.+.++|||+..... ....+..+|.+++++..+.........+.+.++..+ ....+-+|+|++|....
T Consensus 119 yD~viiD~p~~~~~~-----------~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~ 187 (245)
T 3ea0_A 119 YDYIIVDFGASIDHV-----------GVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNSR 187 (245)
T ss_dssp CSEEEEEEESSCCTT-----------HHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT
T ss_pred CCEEEEeCCCCCchH-----------HHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCCC
Confidence 568999999843211 223367899999999876433222233444444432 23457899999996543
No 271
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.81 E-value=0.0045 Score=51.23 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.++++|++|+|||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 699999999999999998664
No 272
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.81 E-value=0.0047 Score=52.84 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
..|+|+|++|+|||||++.|.+..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 369999999999999999998653
No 273
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.78 E-value=0.0049 Score=54.23 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
-.++++|+.|+|||||++.+.|--
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999853
No 274
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.75 E-value=0.0051 Score=53.94 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
No 275
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=95.74 E-value=0.053 Score=47.39 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=40.2
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhccccc-------CCCCEEEEEe
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHK-------DKLPILLVLN 234 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~-------~~~p~ivv~N 234 (348)
.+.++++|||+.... .....+..+|.+|+|++.+.........+...+.... ....+.+|+|
T Consensus 113 ~yD~viiD~p~~~~~-----------~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N 181 (260)
T 3q9l_A 113 DFEFIVCDSPAGIET-----------GALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLT 181 (260)
T ss_dssp TCSEEEEECCSSSSH-----------HHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEE
T ss_pred CCCEEEEcCCCCCCH-----------HHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEe
Confidence 578999999984321 1223356899999999885433222233344444321 1246789999
Q ss_pred ccCC
Q 018949 235 KKDL 238 (348)
Q Consensus 235 K~Dl 238 (348)
++|.
T Consensus 182 ~~~~ 185 (260)
T 3q9l_A 182 RYNP 185 (260)
T ss_dssp EECH
T ss_pred cCCc
Confidence 9984
No 276
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.74 E-value=0.0053 Score=54.88 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999999999999853
No 277
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.73 E-value=0.0052 Score=54.58 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 278
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.73 E-value=0.0051 Score=55.25 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|--
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 79999999999999999999853
No 279
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.72 E-value=0.0046 Score=50.71 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++++|+.|+|||||++.+.|.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999998874
No 280
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.72 E-value=0.0053 Score=54.73 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|--
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
No 281
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.69 E-value=0.0056 Score=54.08 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
No 282
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.69 E-value=0.0052 Score=53.05 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999999853
No 283
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.69 E-value=0.0056 Score=53.90 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
No 284
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.68 E-value=0.0056 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 285
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.63 E-value=0.0061 Score=53.55 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 286
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.61 E-value=0.0061 Score=54.36 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|--
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 79999999999999999999853
No 287
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.59 E-value=0.0057 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..|+|+|++|+|||||++.|.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998874
No 288
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.58 E-value=0.0064 Score=54.01 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999853
No 289
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.58 E-value=0.0065 Score=53.74 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999853
No 290
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.57 E-value=0.0065 Score=54.08 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|+.|+|||||++.+.|-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7999999999999999999985
No 291
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.56 E-value=0.0065 Score=51.36 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
..|+|+|++|+||||+++.|.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 379999999999999999987643
No 292
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.56 E-value=0.0066 Score=53.65 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|+.|+|||||++.+.|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999995
No 293
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.53 E-value=0.0081 Score=49.49 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...|+++|++|+||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999865
No 294
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.52 E-value=0.005 Score=52.91 Aligned_cols=22 Identities=36% Similarity=0.265 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++++|+.|+|||||++.+.|-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999999986
No 295
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.52 E-value=0.0068 Score=54.15 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|+.|+|||||++.+.|-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999995
No 296
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.52 E-value=0.0068 Score=54.54 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|--
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999853
No 297
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.52 E-value=0.007 Score=54.24 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
-.++|+|+.|+|||||++.+.|-.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999999853
No 298
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.45 E-value=0.0074 Score=53.48 Aligned_cols=23 Identities=43% Similarity=0.686 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 299
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.45 E-value=0.0076 Score=53.82 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999853
No 300
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.44 E-value=0.0073 Score=53.77 Aligned_cols=25 Identities=40% Similarity=0.493 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+...++|+|++|+|||||++.+.+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 3447999999999999999998863
No 301
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.44 E-value=0.0083 Score=52.57 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCChHHHHHHHh---CCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMI---GQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~---~~~ 139 (348)
..|+|+|++|+|||||++.|. |..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 379999999999999999998 653
No 302
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.43 E-value=0.0059 Score=51.63 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5999999999999999998864
No 303
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=95.32 E-value=0.14 Score=45.85 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=39.3
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcc----cccCCCCEE-EEEecc
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVG----DHKDKLPIL-LVLNKK 236 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~----~~~~~~p~i-vv~NK~ 236 (348)
.+.++++|||+..... ....+..+|.+|+++............+...+. ....+.+++ +|+|+.
T Consensus 154 ~yD~IiiD~pp~~~~~-----------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~ 222 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY-----------TNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLV 222 (298)
T ss_dssp GCSEEEEEECSSCSHH-----------HHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEES
T ss_pred CCCEEEEECCCCccHH-----------HHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEE
Confidence 3679999999843211 111234589999999886544222222222222 112456644 899999
Q ss_pred CCCC
Q 018949 237 DLIK 240 (348)
Q Consensus 237 Dl~~ 240 (348)
|...
T Consensus 223 ~~~~ 226 (298)
T 2oze_A 223 DTDS 226 (298)
T ss_dssp CTTC
T ss_pred CCCc
Confidence 9765
No 304
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.31 E-value=0.007 Score=50.60 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.++++|++|+|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999975
No 305
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.31 E-value=0.0084 Score=50.79 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|+|++|+||||+++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999865
No 306
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.28 E-value=0.0082 Score=54.70 Aligned_cols=24 Identities=46% Similarity=0.736 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+.-.++|+|++|+|||||++.|.|
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 344899999999999999999875
No 307
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.26 E-value=0.0076 Score=49.45 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.|+|+|++|+||||+.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998763
No 308
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.24 E-value=0.0097 Score=53.06 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 309
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.22 E-value=0.0096 Score=50.57 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|+|++|+||||+++.|..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 310
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.20 E-value=0.01 Score=54.36 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+...|+|+|++|+|||||++.|.+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 3447999999999999999998873
No 311
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.12 E-value=0.0078 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=15.4
Q ss_pred EEEEEcCCCCChHHHHHHHh-CC
Q 018949 117 YVAVLGKPNVGKSTLANQMI-GQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~-~~ 138 (348)
.++|+|++|+|||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 79999999999999999999 65
No 312
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.11 E-value=0.013 Score=53.11 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.-.++|+|+.|+|||||++.+.|-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3379999999999999999999864
No 313
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.09 E-value=0.0071 Score=55.18 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.-.++|+|++|+|||||++.+.|-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 338999999999999999999884
No 314
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.07 E-value=0.011 Score=49.21 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+.++|+|++|+|||||++++++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 37999999999999999999864
No 315
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.03 E-value=0.013 Score=47.75 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHH
Q 018949 117 YVAVLGKPNVGKSTLANQM 135 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l 135 (348)
.|+++|++|+||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6999999999999999999
No 316
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.99 E-value=0.012 Score=54.92 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
-.++|+|++|+|||||++.+.|-.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 379999999999999999999853
No 317
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.98 E-value=0.0097 Score=51.06 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.++|+|++|+|||||++.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 318
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.98 E-value=0.012 Score=54.77 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 79999999999999999999853
No 319
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.95 E-value=1.2 Score=40.51 Aligned_cols=83 Identities=11% Similarity=0.032 Sum_probs=47.5
Q ss_pred cEEEEEecCCCCCchHHHHHHHhcccccCCCCE-EEEEeccCCCC---h------hhHHHHHHHHHhcCCCCeE--EEec
Q 018949 197 DCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDLIK---P------GEIAKKLEWYEKFTDVDEV--IPVS 264 (348)
Q Consensus 197 d~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~NK~Dl~~---~------~~~~~~~~~~~~~~~~~~i--~~vS 264 (348)
+.+++|.................++. .++|+ -+|+|++.-.. + .........+....+..++ +|.-
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~--~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~iPl~ 300 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEK--YSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSDKVVAEVPLL 300 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHH--TTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHH--CCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCCCcEEEecCC
Confidence 57888876653333333445555555 67776 48899998652 1 1112333444444444444 5566
Q ss_pred CCCCCCHHHHHHHHHHh
Q 018949 265 AKYGHGVEDIRDWILTK 281 (348)
Q Consensus 265 A~~g~gi~eL~~~i~~~ 281 (348)
...-.|++.|.......
T Consensus 301 ~~e~~g~~~L~~~~~~l 317 (324)
T 3zq6_A 301 KKEAKGIETLEKIAEQL 317 (324)
T ss_dssp SSCSCSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 66777888877665443
No 320
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.94 E-value=0.013 Score=49.51 Aligned_cols=24 Identities=33% Similarity=0.281 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
...|+|+|++|+||||+.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999998763
No 321
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.93 E-value=0.018 Score=48.08 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=21.3
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+...|+++|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4457999999999999999998654
No 322
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.91 E-value=0.014 Score=47.63 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|.|.+|+||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 323
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.89 E-value=0.0092 Score=49.47 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++++|++|+|||||++++.+.
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 324
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.88 E-value=0.013 Score=51.29 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+...|+|+|+.|+|||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 334799999999999999999876
No 325
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.86 E-value=0.013 Score=54.57 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
....|+|+|++|+|||||++++++
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 334899999999999999999876
No 326
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.85 E-value=0.02 Score=48.58 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..|+|+|.+|+||||+.+.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37999999999999999999875
No 327
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.85 E-value=0.14 Score=45.16 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
....+.|.|++|+|||+|+.++...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3447999999999999999998753
No 328
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.84 E-value=0.014 Score=54.30 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999853
No 329
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=94.84 E-value=0.9 Score=41.82 Aligned_cols=85 Identities=13% Similarity=0.082 Sum_probs=50.2
Q ss_pred ccEEEEEecCCCCCchHHHHHHHhcccccCCCCE-EEEEeccCCCCh---h------hHHHHHHHHHhcCCCCeE--EEe
Q 018949 196 ADCIVVLVDACKAPERIDEILEEGVGDHKDKLPI-LLVLNKKDLIKP---G------EIAKKLEWYEKFTDVDEV--IPV 263 (348)
Q Consensus 196 ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~NK~Dl~~~---~------~~~~~~~~~~~~~~~~~i--~~v 263 (348)
.+.+++|.................++. .++|+ -+|+|++..... . ........+....+..++ +|.
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~--~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl 314 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQK--YGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPL 314 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHH--TTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEEC
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHH--CCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecC
Confidence 467888876654333333445555555 67777 488999986521 1 112333444444444443 666
Q ss_pred cCCCCCCHHHHHHHHHHhC
Q 018949 264 SAKYGHGVEDIRDWILTKL 282 (348)
Q Consensus 264 SA~~g~gi~eL~~~i~~~l 282 (348)
....-.|++.|........
T Consensus 315 ~~~e~~g~~~L~~~~~~l~ 333 (349)
T 3ug7_A 315 LRTEAKGIETLKQIAKILY 333 (349)
T ss_dssp CSSCSCSHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHc
Confidence 7777789888876665554
No 330
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.81 E-value=0.013 Score=50.86 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.++|+|++|+|||||++.+.+
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 799999999999999999883
No 331
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.81 E-value=0.0061 Score=50.66 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.|+|+|++|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999874
No 332
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.79 E-value=0.015 Score=54.25 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|++|+|||||++.+.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 79999999999999999998853
No 333
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.76 E-value=0.015 Score=54.60 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 79999999999999999999853
No 334
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.75 E-value=0.016 Score=52.81 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+...|+|+|++|+|||||++.|.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3447999999999999999998873
No 335
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.73 E-value=0.016 Score=54.19 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|++|+|||||++.+.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 79999999999999999999853
No 336
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.72 E-value=0.017 Score=47.43 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|++.|.+|+||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999875
No 337
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.72 E-value=0.014 Score=49.38 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
+|+|+|.+|+||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999876
No 338
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.71 E-value=0.018 Score=47.86 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|.|.+|+||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999854
No 339
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.71 E-value=0.014 Score=50.18 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|+|++|+||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999865
No 340
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.69 E-value=0.018 Score=48.77 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|+|++|+||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999976
No 341
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.66 E-value=0.017 Score=54.22 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 79999999999999999999853
No 342
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.66 E-value=0.023 Score=48.09 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+...|+|.|.+|+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 344799999999999999999864
No 343
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.63 E-value=0.021 Score=47.01 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|.+.|.+|+||||+.+.|..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 344
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.63 E-value=0.017 Score=54.13 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
-.++|+|++|+|||||++.+.|-.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 379999999999999999998853
No 345
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.62 E-value=0.093 Score=50.13 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
-|.+.|+||+|||+|+.++.+.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 6999999999999999998763
No 346
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.59 E-value=0.015 Score=47.08 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++++|++|+|||||++++.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998874
No 347
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.56 E-value=0.019 Score=52.69 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
++..|+|+|++|+|||||++.|.+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999865
No 348
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.56 E-value=0.016 Score=53.42 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|++|+|||||++.+.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999984
No 349
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.56 E-value=0.017 Score=53.86 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..++|+|++|+|||||++.+.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999985
No 350
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.53 E-value=0.094 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
-|.+.|+||+|||+|+.++.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999998763
No 351
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.52 E-value=0.022 Score=49.44 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+...|+|.|..|+||||+++.|.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4447999999999999999998874
No 352
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.51 E-value=0.022 Score=47.40 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+++|.+|+||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 353
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.51 E-value=0.022 Score=48.09 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+++|++|+||||+...|..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 354
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.50 E-value=0.022 Score=48.14 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|+|.+|+||||+.+.|.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 355
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.49 E-value=0.021 Score=48.35 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...|+|+|.+|+|||||++.|.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999875
No 356
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.49 E-value=0.26 Score=42.87 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|.+.|++|+|||+++.++..
T Consensus 41 ~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999865
No 357
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=94.46 E-value=0.034 Score=49.85 Aligned_cols=33 Identities=33% Similarity=0.334 Sum_probs=23.4
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCC
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDAC 206 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~ 206 (348)
+.++++|||+.... .+...+..+|.+|+++..+
T Consensus 104 yD~viiD~p~~~~~-----------~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 104 CDFILIDTPGGDSA-----------ITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp CSEEEEECCSSCCH-----------HHHHHHHTCSEEEEEEESS
T ss_pred CCEEEEcCCCCccH-----------HHHHHHHHCCEEEEEEcCC
Confidence 57999999984321 1223467899999999875
No 358
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.46 E-value=0.013 Score=54.73 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..+++|+|++|+|||||++.|.|.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999874
No 359
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.46 E-value=0.026 Score=47.56 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+...|+|+|.+|+||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 444799999999999999998854
No 360
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.45 E-value=0.021 Score=47.44 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|.|.+|+||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998753
No 361
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.45 E-value=0.023 Score=47.97 Aligned_cols=23 Identities=26% Similarity=0.250 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999864
No 362
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.45 E-value=0.021 Score=47.28 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+++|.+|+||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999863
No 363
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.42 E-value=0.02 Score=53.96 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|++|+|||||++.+.|-.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 79999999999999999998853
No 364
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.41 E-value=0.019 Score=53.90 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=21.2
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
....|+|+|++|+|||||++.+.+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 344799999999999999999986
No 365
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.38 E-value=0.022 Score=51.46 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.9
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+...|+|+|.+|+|||||++.|.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999998765
No 366
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.38 E-value=0.026 Score=46.61 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~ 136 (348)
...|+++|.+|+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3479999999999999999886
No 367
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.36 E-value=0.022 Score=47.22 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|.|.+|+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 368
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.33 E-value=0.023 Score=47.69 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 599999999999999998864
No 369
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.32 E-value=0.17 Score=47.78 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
-|.+.|+||+|||+|..++.+.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHh
Confidence 5999999999999999999763
No 370
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.28 E-value=0.015 Score=54.09 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|++|+|||||++.+.|-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 79999999999999999999853
No 371
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.26 E-value=0.027 Score=47.21 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+...|+|+|.+|+||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4457999999999999999998764
No 372
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.24 E-value=0.019 Score=51.42 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.7
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 018949 118 VAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~ 138 (348)
++++|++|+|||||++++.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999873
No 373
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.21 E-value=0.029 Score=49.46 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHHHHh
Q 018949 116 GYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~ 136 (348)
..|+|+|++|+||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 374
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.20 E-value=0.022 Score=54.20 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+...|+|+|++|+|||||++++++.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 3447999999999999999999863
No 375
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.20 E-value=0.027 Score=46.58 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+.++|+|.+|+|||||++++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999874
No 376
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.19 E-value=0.034 Score=46.24 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+...|+++|.+|+||||+.+.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 344799999999999999998864
No 377
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.13 E-value=0.15 Score=48.87 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
-|.+.|+||+|||+|..++.+.
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHH
T ss_pred ceEeeCCCCCcHHHHHHHHHhc
Confidence 6999999999999999999763
No 378
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.11 E-value=0.03 Score=46.66 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|+|.+|+||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
No 379
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.06 E-value=0.023 Score=55.54 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|++|+|||||++++++.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999873
No 380
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.06 E-value=0.032 Score=46.90 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..|+|.|.+|+||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
No 381
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.05 E-value=0.12 Score=49.01 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
...|+++|.+|+||||+.++|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 347899999999999999998753
No 382
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.05 E-value=0.028 Score=47.91 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
+|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999853
No 383
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.04 E-value=0.014 Score=54.36 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|++|+|||||++.+.|-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999999853
No 384
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.03 E-value=0.034 Score=50.07 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=20.5
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+...|+++|++|+||||+...|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 334699999999999999999864
No 385
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.02 E-value=0.039 Score=46.46 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...|+|.|.+|+||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998863
No 386
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.00 E-value=0.031 Score=46.29 Aligned_cols=20 Identities=20% Similarity=0.458 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
.|+++|.+|+||||+.+.|.
T Consensus 7 ~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999985
No 387
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.98 E-value=0.033 Score=47.14 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...|+|.|.+|+||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999864
No 388
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.95 E-value=0.031 Score=46.21 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...+|+|+.|+|||||+.++.+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999854
No 389
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.95 E-value=0.023 Score=46.84 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=15.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~ 136 (348)
...|+|.|.+|+||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999985
No 390
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.94 E-value=0.03 Score=47.73 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
+|+|+|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999853
No 391
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.93 E-value=0.023 Score=49.81 Aligned_cols=21 Identities=43% Similarity=0.790 Sum_probs=19.5
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 018949 118 VAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~ 138 (348)
++++|++|+|||||++++.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999863
No 392
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.87 E-value=0.034 Score=47.62 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|+|.+|+||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
No 393
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.85 E-value=0.091 Score=47.31 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
-+.+.|+||+|||+|..++..
T Consensus 38 ~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577779999999999999865
No 394
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.79 E-value=0.038 Score=54.36 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|+.|+|||||++.|.|.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 79999999999999999999853
No 395
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.76 E-value=0.035 Score=47.85 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCChHHHHHHHh
Q 018949 116 GYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~ 136 (348)
..|+|.|.+|+||||+.+.|.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999885
No 396
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.75 E-value=0.037 Score=45.63 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.2
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...|+++|.+|+||||+.+.|.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999865
No 397
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.72 E-value=0.2 Score=44.32 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..+.|.|++|+|||+|++++..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3699999999999999999865
No 398
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.72 E-value=0.026 Score=54.39 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCChHHHHHHHhCC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+..+++|+|+.|+|||||++.|.|-
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3448999999999999999999864
No 399
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.71 E-value=0.21 Score=47.52 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
-|.+.|+||+|||+|+.++.+.
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHH
T ss_pred CCceECCCCchHHHHHHHHHHH
Confidence 6999999999999999999764
No 400
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.69 E-value=0.03 Score=51.91 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCCChHHHHHHHhCC
Q 018949 113 HKSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 113 ~~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.+.-+++|+|++|+|||||++.+.+.
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34558999999999999999999875
No 401
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.67 E-value=0.028 Score=48.05 Aligned_cols=22 Identities=27% Similarity=0.705 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|++|+|||||+..+.+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998853
No 402
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.67 E-value=0.033 Score=54.83 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++++|+.|+|||||++.+.|.-
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 403
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.60 E-value=0.043 Score=44.93 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCChHHHHHHHhCC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
..+.|.|++|+|||+|++++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999988653
No 404
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.60 E-value=0.048 Score=45.11 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|.|.+|+||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998853
No 405
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.56 E-value=0.035 Score=45.62 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|+|.+|+||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999998854
No 406
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.54 E-value=0.041 Score=48.13 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+..+|+|.|.+|+||||+...|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999999863
No 407
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.53 E-value=0.039 Score=47.28 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|+|.+|+||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998853
No 408
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.50 E-value=0.037 Score=46.24 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|.|.+|+||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 409
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.48 E-value=0.042 Score=44.59 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
+|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998854
No 410
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.48 E-value=0.18 Score=42.22 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.+.+.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998865
No 411
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.45 E-value=0.031 Score=50.27 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 7999999999999999998764
No 412
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.39 E-value=0.032 Score=51.33 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 6999999999999999998764
No 413
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.36 E-value=0.033 Score=49.65 Aligned_cols=21 Identities=43% Similarity=0.790 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 018949 118 VAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 118 v~i~G~~~~GKSsLin~l~~~ 138 (348)
|+|+|++|+|||||++++.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999863
No 414
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.35 E-value=0.061 Score=46.39 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=19.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...|.|+|+||+||+|....|..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 33577899999999999988764
No 415
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.33 E-value=0.037 Score=48.71 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+...|+++|.+|+||||+.+.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999999864
No 416
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.32 E-value=0.04 Score=45.59 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|+|.+|+||||+...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998753
No 417
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.32 E-value=0.17 Score=47.12 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
-.+|+|++|+|||||++++.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57799999999999999976
No 418
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.31 E-value=0.068 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
-|.+.|+||+|||+|+.++.+.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 419
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.31 E-value=0.048 Score=46.51 Aligned_cols=22 Identities=41% Similarity=0.412 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|.|.+|+||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 420
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.28 E-value=0.045 Score=46.65 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
+|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 421
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.27 E-value=0.047 Score=45.28 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 422
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.24 E-value=0.043 Score=54.82 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.|.|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 89999999999999999999853
No 423
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.20 E-value=0.049 Score=54.14 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.-.++++|++|+|||||++.+.|-.
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3389999999999999999999853
No 424
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.19 E-value=0.043 Score=46.97 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|+|.+|+||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
No 425
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.15 E-value=0.051 Score=48.04 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+++|.+|+||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 426
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.11 E-value=0.047 Score=45.51 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 427
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.11 E-value=0.039 Score=53.42 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
-.++|+|++|+|||||++.+.|
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4799999999999999999874
No 428
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.09 E-value=0.022 Score=48.29 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|.|.+|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 429
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=93.01 E-value=0.048 Score=54.44 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
-.++|+|+.|+|||||++.+.|.-
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 379999999999999999999853
No 430
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.96 E-value=0.057 Score=47.39 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+...|+|.|.+|+||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 334799999999999999998854
No 431
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.93 E-value=0.061 Score=43.31 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=18.8
Q ss_pred cEEEEEcCCCCChHHHHHHHh
Q 018949 116 GYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~ 136 (348)
+..+|+|+.|+||||++.++.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999975
No 432
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.92 E-value=0.055 Score=53.76 Aligned_cols=25 Identities=36% Similarity=0.443 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.-.++++|++|+|||||++.+.|-.
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3389999999999999999998853
No 433
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.90 E-value=0.071 Score=47.73 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=20.4
Q ss_pred CccEEEEEcCCCCChHHHHHHHh
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~ 136 (348)
+...|+|.|.+|+||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34479999999999999999986
No 434
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.90 E-value=0.049 Score=54.29 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.-.++++|++|+|||||++.+.|-.
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3389999999999999999999853
No 435
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.86 E-value=0.054 Score=44.13 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998753
No 436
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.85 E-value=0.056 Score=45.84 Aligned_cols=21 Identities=38% Similarity=0.243 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.++|+|++|+|||||+..+.+
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 437
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.84 E-value=0.051 Score=47.86 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|+|++|+|||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999864
No 438
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.83 E-value=0.054 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999853
No 439
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.81 E-value=0.054 Score=51.87 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=23.6
Q ss_pred CCCCccEEEEEcCCCCChHHHHHHHhCC
Q 018949 111 PNHKSGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 111 ~~~~~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
+-.+.-+++|+|++|+|||||++.+.+.
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3345558999999999999999999874
No 440
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.80 E-value=0.054 Score=54.04 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.-.++++|++|+|||||++.+.|-.
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3489999999999999999999853
No 441
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.77 E-value=0.061 Score=45.94 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|.|+|+||+||+|....|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 442
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.75 E-value=0.068 Score=45.42 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=20.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...|+++|.+|+||||+.+.|.+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998865
No 443
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.74 E-value=0.047 Score=47.12 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|++|+|||||+..+.+.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 7999999999999999999873
No 444
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.72 E-value=0.061 Score=46.26 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
No 445
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.70 E-value=0.069 Score=46.18 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|+|.+|+||||+.+.|..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
No 446
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.69 E-value=0.064 Score=46.78 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=19.8
Q ss_pred ccEEEEEcCCCCChHHHHHHHh
Q 018949 115 SGYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~ 136 (348)
...|+|.|++|+||||+.+.|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3479999999999999999886
No 447
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.67 E-value=0.06 Score=47.49 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|+|++|+||||+.+.|.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 448
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.67 E-value=0.058 Score=53.09 Aligned_cols=24 Identities=21% Similarity=0.545 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhCCc
Q 018949 116 GYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
-.++|+|+.|+|||||++.+.|..
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 449
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.67 E-value=0.045 Score=54.33 Aligned_cols=25 Identities=36% Similarity=0.298 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCCc
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.-.++++|++|+|||||++.+.|--
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 3389999999999999999998853
No 450
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=92.63 E-value=0.25 Score=43.35 Aligned_cols=66 Identities=20% Similarity=0.264 Sum_probs=43.3
Q ss_pred CeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEEEEEeccCC
Q 018949 162 EYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPILLVLNKKDL 238 (348)
Q Consensus 162 ~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl 238 (348)
.+.+.++|||+.... .....+..+|.+|+++..+.........+.+.++..+.+.++.+|+|+++.
T Consensus 144 ~yD~viiD~pp~~~~-----------~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 144 KYDYIVIDTNPSLDV-----------TLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp TCSEEEEEECSSCSH-----------HHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred CCCEEEEECcCCccH-----------HHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 467999999984321 122335679999999988654333333445555554456788899999953
No 451
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.62 E-value=0.07 Score=45.65 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=20.3
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...+.|.|++|+|||+|+.++..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998865
No 452
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.53 E-value=0.086 Score=45.69 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.6
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+...|+|.|.+|+||||+++.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 344799999999999999999864
No 453
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.52 E-value=0.056 Score=44.18 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..+.|.|++|+|||+|+.++..
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998865
No 454
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.51 E-value=0.061 Score=50.42 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...++++|++|+|||||++.+.+
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 33799999999999999999886
No 455
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.40 E-value=0.056 Score=47.40 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.|+++|++|+|||||++++.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999998753
No 456
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.37 E-value=0.066 Score=53.46 Aligned_cols=23 Identities=22% Similarity=0.580 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999854
No 457
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.37 E-value=0.06 Score=53.54 Aligned_cols=24 Identities=46% Similarity=0.537 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.-.++++|++|+|||||++.+.|-
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 338999999999999999999884
No 458
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.35 E-value=0.075 Score=43.20 Aligned_cols=21 Identities=29% Similarity=0.331 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|.|.+|+||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998753
No 459
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.34 E-value=0.083 Score=45.78 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
+...|+|+|.+|+||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 444899999999999999998864
No 460
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.26 E-value=0.2 Score=45.71 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
-|.+.|+||+|||+|+.++..
T Consensus 47 ~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 699999999999999999875
No 461
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.17 E-value=0.085 Score=44.26 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..+.|.|++|+|||+|+.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 462
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.12 E-value=0.6 Score=42.13 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=17.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
-+.+.|++|+|||+++.++..
T Consensus 50 ~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHH
Confidence 356667799999999999864
No 463
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.08 E-value=0.09 Score=44.32 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCCChHHHHHHHhC
Q 018949 114 KSGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
....|++.|.+|+||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999998864
No 464
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.87 E-value=0.082 Score=52.76 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.+.|-.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58999999999999999999864
No 465
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.77 E-value=0.58 Score=43.66 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|.|++|+|||+|+.++..
T Consensus 149 ~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 466
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.43 E-value=0.095 Score=46.65 Aligned_cols=21 Identities=33% Similarity=0.324 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.++|+|++|+|||||+..+.+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999876
No 467
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.41 E-value=0.15 Score=43.31 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.|+|+|++|+|||||...|...-
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 69999999999999999998654
No 468
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.28 E-value=0.25 Score=47.92 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|.|.|++|+|||+++.++..
T Consensus 239 ~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 469
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.20 E-value=0.38 Score=49.44 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
-|.+.|+||+|||+|++++.+.
T Consensus 240 GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999874
No 470
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.16 E-value=0.11 Score=44.05 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.+.|.|++|+|||||+..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 471
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.11 E-value=0.12 Score=41.14 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.|.|.|++|+|||++..++...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 5999999999999999998653
No 472
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.10 E-value=0.14 Score=45.84 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=19.5
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...+.|.|+||+|||+++.++..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 33699999999999999987654
No 473
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.04 E-value=0.13 Score=43.62 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCChHHHHHHHh
Q 018949 116 GYVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~ 136 (348)
...+|+|+.|+||||++.++.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 468999999999999999974
No 474
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.03 E-value=0.12 Score=46.32 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+++|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 475
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.01 E-value=0.11 Score=44.46 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
.+++.|+||+||||++.++.
T Consensus 60 ~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999998887765
No 476
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.99 E-value=0.13 Score=43.19 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 477
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.94 E-value=0.14 Score=45.78 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|.+.|++|+|||++++++.+
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3799999999999999999875
No 478
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.93 E-value=0.08 Score=57.72 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=0.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
+|+|||++|+|||||++.|.+
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
No 479
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.89 E-value=0.14 Score=46.70 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|+|++|+|||||...|..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 4689999999999999999864
No 480
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.84 E-value=0.092 Score=48.17 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.++|.|++|+||||+++++.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999876
No 481
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=90.75 E-value=0.017 Score=50.23 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|+|++|+|||||++++.+.
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999874
No 482
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.68 E-value=0.35 Score=41.70 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=24.7
Q ss_pred cEEEEEecCCCCCc-hHHHHHHHhcccccCCCCEEEEEeccCCCC
Q 018949 197 DCIVVLVDACKAPE-RIDEILEEGVGDHKDKLPILLVLNKKDLIK 240 (348)
Q Consensus 197 d~iv~VvD~~~~~~-~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 240 (348)
+.-++++|-.+-.. .+.+.+ ..+.. .++|+|+++-..|-..
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~ 130 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLDKNFKG 130 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCSBCTTS
T ss_pred CCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEeccccccC
Confidence 34466778765442 222333 33333 4799999999999754
No 483
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.68 E-value=0.17 Score=45.34 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.++++|++|+|||+++.++.+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999998865
No 484
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.67 E-value=0.12 Score=47.68 Aligned_cols=24 Identities=13% Similarity=0.371 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhCC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~~ 138 (348)
...++|.|++|+|||||++.+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 336999999999999999998763
No 485
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=90.63 E-value=0.79 Score=40.10 Aligned_cols=67 Identities=19% Similarity=0.138 Sum_probs=40.8
Q ss_pred CCeeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEE-EEEeccCC
Q 018949 161 PEYQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDL 238 (348)
Q Consensus 161 ~~~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl 238 (348)
+.+.++++|||+..... .+ . ...+..+|.+|+|+..............+.++. .+.+++ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~--~~-~------~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~--~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDA--PL-T------VMQDAKPTGVVVVSTPQELTAVIVEKAINMAEE--TNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSH--HH-H------HHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHT--TTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchH--HH-H------HHhhccCCeEEEEecCccchHHHHHHHHHHHHh--CCCCEEEEEECCCcc
Confidence 45789999999843211 01 0 011226899999998765443333334444444 467777 99999874
No 486
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.54 E-value=0.13 Score=44.25 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
.++|+|++|+|||||+..+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999987765
No 487
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.53 E-value=0.076 Score=55.70 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCc
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQK 139 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~ 139 (348)
.++|+|+.|+|||||++.|.|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999999853
No 488
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.49 E-value=0.17 Score=41.92 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCce
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQKL 140 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~~~ 140 (348)
-|+|.|++|+||||+.-.|.....
T Consensus 18 gvli~G~SGaGKStlal~L~~rG~ 41 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDRGH 41 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHTTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHcCC
Confidence 599999999999999999876443
No 489
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.45 E-value=0.35 Score=42.91 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=41.6
Q ss_pred eeEEEEeCCCCchhhhhhhHHHHHHHHHhhccCccEEEEEecCCCCCchHHHHHHHhcccccCCCCEE-EEEeccCCC
Q 018949 163 YQMILYDTPGIIEKKIHMLDSMMMKNVRSAGINADCIVVLVDACKAPERIDEILEEGVGDHKDKLPIL-LVLNKKDLI 239 (348)
Q Consensus 163 ~~~~l~DtpG~~~~~~~~l~~~~~~~~~~~~~~ad~iv~VvD~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~NK~Dl~ 239 (348)
+.++++|||+..... . .......+|.+|+|+..............+.+.. .+.+++ +|+|++|..
T Consensus 192 yD~VIIDtpp~~~~~-d---------~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~--~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-D---------AQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEA--TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCS-H---------HHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHT--TTCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHH-H---------HHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHh--CCCCEEEEEEeCCcCC
Confidence 468999999853311 0 1112346899999999876554444455555555 456666 899999864
No 490
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=90.37 E-value=0.16 Score=45.70 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 018949 117 YVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~ 137 (348)
.|++.|++|+|||+|++++.+
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999876
No 491
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.36 E-value=0.16 Score=44.01 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|.|..|+||||+++.|..
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 492
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.32 E-value=0.13 Score=47.69 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.++|.|++|+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998753
No 493
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.28 E-value=0.1 Score=46.93 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=17.1
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
...|+|.|.+|+||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998764
No 494
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=90.21 E-value=0.44 Score=44.02 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|+|.|++|+|||+|+.++..
T Consensus 118 ~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 495
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.19 E-value=0.17 Score=43.95 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=19.7
Q ss_pred ccEEEEEcCCCCChHHHHHHHhC
Q 018949 115 SGYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 115 ~~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..+++|+|.||+||||+...|..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 34899999999999999998754
No 496
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=90.08 E-value=0.17 Score=45.87 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..+.|.|++|+|||||++++.+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3699999999999999999875
No 497
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=90.05 E-value=0.052 Score=51.25 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 018949 117 YVAVLGKPNVGKSTLANQMI 136 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~ 136 (348)
.++|+|+.|+|||||+++|.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999873
No 498
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.04 E-value=0.63 Score=44.41 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCChHHHHHHHhC
Q 018949 116 GYVAVLGKPNVGKSTLANQMIG 137 (348)
Q Consensus 116 ~~v~i~G~~~~GKSsLin~l~~ 137 (348)
..|.|.|+||+|||+|+.++..
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999875
No 499
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=90.00 E-value=0.18 Score=46.91 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.6
Q ss_pred CccEEEEEcCCCCChHHHHHHH
Q 018949 114 KSGYVAVLGKPNVGKSTLANQM 135 (348)
Q Consensus 114 ~~~~v~i~G~~~~GKSsLin~l 135 (348)
+..+|+++|.+++||||++..+
T Consensus 32 ~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHH
Confidence 4458999999999999999886
No 500
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.00 E-value=0.12 Score=40.93 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 018949 117 YVAVLGKPNVGKSTLANQMIGQ 138 (348)
Q Consensus 117 ~v~i~G~~~~GKSsLin~l~~~ 138 (348)
.|.+.|++|+|||++..++...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 5999999999999999988764
Done!