BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018950
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 181 bits (459), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 88/168 (52%), Positives = 111/168 (66%), Gaps = 2/168 (1%)
Query: 1 MEKYDDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRR 60
+++ D Q+ LPPGFRF+PTDEEL+ YL K FS + I E+DL K +PW LP +
Sbjct: 6 IQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNK 65
Query: 61 AKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKG 120
A GEKEWYFF RDRKYP G R NR +GYWKATG DK I VG+KK LVFY G
Sbjct: 66 ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIG 125
Query: 121 RAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKK 168
+APKG KTNW+MHEYRL + + T ++WV+CR+++K +K
Sbjct: 126 KAPKGTKTNWIMHEYRLIE--PSRRNGSTKLDDWVLCRIYKKQSSAQK 171
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 181 bits (458), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 88/168 (52%), Positives = 111/168 (66%), Gaps = 2/168 (1%)
Query: 1 MEKYDDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRR 60
+++ D Q+ LPPGFRF+PTDEEL+ YL K FS + I E+DL K +PW LP +
Sbjct: 9 IQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNK 68
Query: 61 AKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKG 120
A GEKEWYFF RDRKYP G R NR +GYWKATG DK I VG+KK LVFY G
Sbjct: 69 ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIG 128
Query: 121 RAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGGKK 168
+APKG KTNW+MHEYRL + + T ++WV+CR+++K +K
Sbjct: 129 KAPKGTKTNWIMHEYRLIE--PSRRNGSTKLDDWVLCRIYKKQSSAQK 174
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/161 (52%), Positives = 103/161 (63%), Gaps = 3/161 (1%)
Query: 5 DDQEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMG 64
D + ++ LPPGFRFHPTD+EL+ HYL K I EVDL K +PWDLP RA G
Sbjct: 8 DAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG 67
Query: 65 EKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPK 124
+EWYFF RDRKYP G R NRA GYWKATG DK + +G+KK LVFY G+AP+
Sbjct: 68 AREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPR 127
Query: 125 GQKTNWVMHEYRLEGKYSAYDHPKTAK---NEWVICRVFQK 162
G KT+W+MHEYRL A K ++WV+CR++ K
Sbjct: 128 GVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168
>pdb|1V02|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|B Chain B, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|C Chain C, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|D Chain D, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|F Chain F, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 13 PPGFRFHPTDEELITHYL-------TPKVFDGCFSARAIG----EVDLNKCEPWDLPRR 60
P G R HP +E H+L + + + F RA +++ PW++PRR
Sbjct: 15 PAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRLSPWEIPRR 73
>pdb|1V03|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 13 PPGFRFHPTDEELITHYL-------TPKVFDGCFSARAIG----EVDLNKCEPWDLPRR 60
P G R HP +E H+L + + + F RA +++ PW++PRR
Sbjct: 15 PAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRLSPWEIPRR 73
>pdb|1V02|E Chain E, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 13 PPGFRFHPTDEELITHYL-------TPKVFDGCFSARAIG----EVDLNKCEPWDLPRR 60
P G R HP +E H+L + + + F RA +++ PW++PRR
Sbjct: 15 PAGLRSHPNNESFSRHHLCSSPQNISKRRSNLSFRPRAQTISSESAGIHRLSPWEIPRR 73
>pdb|2ZET|C Chain C, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|D Chain D, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 153
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 52 CEPWDLPRRAKMGEKEWYFFCVRDR 76
C+P L R K+G EWY+ VR R
Sbjct: 111 CDPCHLARVVKIGSLEWYYQHVRAR 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,086,222
Number of Sequences: 62578
Number of extensions: 402993
Number of successful extensions: 723
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 12
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)