Query 018950
Match_columns 348
No_of_seqs 236 out of 1021
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 08:34:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018950.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018950hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.1E-59 3.7E-64 422.4 15.2 158 7-164 10-170 (174)
2 1ut7_A No apical meristem prot 100.0 2.8E-59 9.5E-64 418.7 13.8 159 7-167 12-170 (171)
3 1ldd_A APC2WHB, anaphase promo 21.1 38 0.0013 25.9 1.6 27 13-40 37-64 (74)
4 1cmb_A Met APO-repressor; DNA- 20.2 70 0.0024 25.6 2.9 40 19-62 50-89 (104)
5 4dox_A Coat protein; all helix 15.6 84 0.0029 28.9 2.8 26 10-35 153-178 (226)
6 1na6_A Ecorii, restriction end 15.2 1.6E+02 0.0054 29.3 4.7 43 112-159 79-123 (404)
7 3sri_B Rhoptry NECK protein 2; 15.1 56 0.0019 20.6 1.0 19 251-269 8-26 (29)
8 2oh5_A Polyhedrin, C-polyhedri 11.2 1.5E+02 0.005 26.3 2.9 27 90-116 140-167 (248)
9 1ym0_B Fibrinotic enzyme compo 10.8 1.1E+02 0.0037 18.8 1.3 12 4-15 16-27 (27)
10 2c4b_A Barnase mcoeeti fusion; 10.5 1.4E+02 0.0049 25.5 2.5 61 21-95 4-72 (143)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.1e-59 Score=422.37 Aligned_cols=158 Identities=52% Similarity=1.016 Sum_probs=138.1
Q ss_pred ccCCCCCCceeeCCCHHHHHHHHhhhhhcCCCCcccceeeccCCCCCCCCcccccccCCceEEEEEeccccCCCCCcccc
Q 018950 7 QEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNR 86 (348)
Q Consensus 7 ~~~~~LPpGfRF~PTDEELI~~YL~~Kv~g~~~~~~~I~evDly~~ePwdLP~~~~~ge~eWYFFs~r~rky~~G~R~nR 86 (348)
...+.|||||||||||||||.|||++|+.+.+++..+|+|+|||++|||+||+.+..|+++|||||+|++||++|.|+||
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR 89 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNR 89 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCE
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCcee
Confidence 56789999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred cccCceeeecCCCeeeeeCCceeeeEEEEEEeeccCCCCCCcCeEEEEEEeCCCCCCCC---CCCCCCCcEEEEEEEEcC
Q 018950 87 ATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLEGKYSAYD---HPKTAKNEWVICRVFQKS 163 (348)
Q Consensus 87 at~~GyWKatGk~k~I~~~g~~VG~KKtLvFY~Grapkg~KT~WvMhEYrL~~~~~~~~---lp~~~~~e~VLCRVf~K~ 163 (348)
+|++||||+||++++|..++.+||+||||+||.|++|+|.||+|+||||+|.+...... ......++|||||||+|+
T Consensus 90 ~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~ 169 (174)
T 3ulx_A 90 AAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169 (174)
T ss_dssp EETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESC
T ss_pred ecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcC
Confidence 99999999999999999889999999999999999999999999999999987642210 111235899999999997
Q ss_pred C
Q 018950 164 G 164 (348)
Q Consensus 164 ~ 164 (348)
+
T Consensus 170 ~ 170 (174)
T 3ulx_A 170 N 170 (174)
T ss_dssp C
T ss_pred C
Confidence 4
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=2.8e-59 Score=418.67 Aligned_cols=159 Identities=54% Similarity=0.994 Sum_probs=134.7
Q ss_pred ccCCCCCCceeeCCCHHHHHHHHhhhhhcCCCCcccceeeccCCCCCCCCcccccccCCceEEEEEeccccCCCCCcccc
Q 018950 7 QEQIELPPGFRFHPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNR 86 (348)
Q Consensus 7 ~~~~~LPpGfRF~PTDEELI~~YL~~Kv~g~~~~~~~I~evDly~~ePwdLP~~~~~ge~eWYFFs~r~rky~~G~R~nR 86 (348)
...+.|||||||||||||||.|||++|+.+.+++..+|+++|||++|||+||+.+..|+++|||||++++||++|.|+||
T Consensus 12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R 91 (171)
T 1ut7_A 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNR 91 (171)
T ss_dssp CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCE
T ss_pred ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccc
Confidence 45789999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred cccCceeeecCCCeeeeeCCceeeeEEEEEEeeccCCCCCCcCeEEEEEEeCCCCCCCCCCCCCCCcEEEEEEEEcCCCC
Q 018950 87 ATEAGYWKATGKDKEIYKAKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLEGKYSAYDHPKTAKNEWVICRVFQKSGGG 166 (348)
Q Consensus 87 at~~GyWKatGk~k~I~~~g~~VG~KKtLvFY~Grapkg~KT~WvMhEYrL~~~~~~~~lp~~~~~e~VLCRVf~K~~~~ 166 (348)
+|++||||+||++++|..++.+||+||+|+||+|++|+|.||+|+||||+|..... .......++|||||||+|+...
T Consensus 92 ~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~--~~~~~~~~~~VlCrv~~k~~~~ 169 (171)
T 1ut7_A 92 VAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSR--RNGSTKLDDWVLCRIYKKQSSA 169 (171)
T ss_dssp EETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC----------CCEEEEEEEECC---
T ss_pred cCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcc--ccCcccCCCEEEEEEEEcCCCC
Confidence 99999999999999999989999999999999999999999999999999987641 1112345899999999998654
Q ss_pred C
Q 018950 167 K 167 (348)
Q Consensus 167 k 167 (348)
+
T Consensus 170 ~ 170 (171)
T 1ut7_A 170 Q 170 (171)
T ss_dssp -
T ss_pred C
Confidence 3
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=21.10 E-value=38 Score=25.86 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=22.5
Q ss_pred CCceeeCC-CHHHHHHHHhhhhhcCCCCc
Q 018950 13 PPGFRFHP-TDEELITHYLTPKVFDGCFS 40 (348)
Q Consensus 13 PpGfRF~P-TDEELI~~YL~~Kv~g~~~~ 40 (348)
|.|+.|.. |++||-. ||.+|+...-+.
T Consensus 37 ~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 37 PKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp CGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 67899998 9999888 999999887543
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=20.24 E-value=70 Score=25.58 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHhhhhhcCCCCcccceeeccCCCCCCCCcccccc
Q 018950 19 HPTDEELITHYLTPKVFDGCFSARAIGEVDLNKCEPWDLPRRAK 62 (348)
Q Consensus 19 ~PTDEELI~~YL~~Kv~g~~~~~~~I~evDly~~ePwdLP~~~~ 62 (348)
|-|.-||++.-...-..|+|+|. +.||-+..|.++|..++
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~ak 89 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAAK 89 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHHH
Confidence 67889999987777888999986 47999999999998754
No 5
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=15.61 E-value=84 Score=28.88 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=17.8
Q ss_pred CCCCCceeeCCCHHHHHHHHhhhhhc
Q 018950 10 IELPPGFRFHPTDEELITHYLTPKVF 35 (348)
Q Consensus 10 ~~LPpGfRF~PTDEELI~~YL~~Kv~ 35 (348)
+.-+-|..+.||++|+|.|=..+++.
T Consensus 153 l~P~~GLiR~PT~~E~iA~~t~K~ia 178 (226)
T 4dox_A 153 MQPPSGLTRSPTQEERIANATNKQVH 178 (226)
T ss_dssp CCCTTCCSSCCCHHHHHHHHTC----
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 33344899999999999987766553
No 6
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=15.16 E-value=1.6e+02 Score=29.33 Aligned_cols=43 Identities=14% Similarity=0.256 Sum_probs=29.0
Q ss_pred EEEEEEeeccCCCCCCcCeEEEEEEeC--CCCCCCCCCCCCCCcEEEEEE
Q 018950 112 KKTLVFYKGRAPKGQKTNWVMHEYRLE--GKYSAYDHPKTAKNEWVICRV 159 (348)
Q Consensus 112 KKtLvFY~Grapkg~KT~WvMhEYrL~--~~~~~~~lp~~~~~e~VLCRV 159 (348)
.-++.||..|-.++.|. ||||. ......-.....++-+||++.
T Consensus 79 d~~~twYn~R~~~~tRn-----EyRLt~~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 79 EARAIYYNSAHFGKTRN-----EKRITRWGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEEEECGGGTTSCCC-----EEEEECCCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEEEEEecccccCCCCC-----ceEEeecCCCCcccccCCCCCEEEEEEe
Confidence 66899999887777777 99998 544222223334567788866
No 7
>3sri_B Rhoptry NECK protein 2; AMA1, RON2, malaria, cell invasion; 1.60A {Plasmodium falciparum}
Probab=15.05 E-value=56 Score=20.62 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=14.8
Q ss_pred ccccccccCCCCCcccccc
Q 018950 251 PASIFFSKSSFSNSLYADQ 269 (348)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ 269 (348)
-+||+.++++++-+.+.+|
T Consensus 8 ~tSCyTs~~~PPkqiCi~q 26 (29)
T 3sri_B 8 VASCFTTRMSPPQQICLNS 26 (29)
T ss_dssp CCSEEEESSSSCCEEEEC-
T ss_pred chheeecccCchHHHHHHH
Confidence 3679999999998876655
No 8
>2oh5_A Polyhedrin, C-polyhedrin; beta barrel, intracellular crystal, nucleotide binding, STRU protein, RNA binding protein; HET: GTP ATP CTP; 1.98A {Bombyx mori cypovirus 1} PDB: 2oh6_A* 2oh7_A*
Probab=11.17 E-value=1.5e+02 Score=26.33 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=21.1
Q ss_pred CceeeecCC-CeeeeeCCceeeeEEEEE
Q 018950 90 AGYWKATGK-DKEIYKAKALVGMKKTLV 116 (348)
Q Consensus 90 ~GyWKatGk-~k~I~~~g~~VG~KKtLv 116 (348)
+--|.+||- -|.|..+|++||....|.
T Consensus 140 shpweatgikyrki~~dgeivgyshyfe 167 (248)
T 2oh5_A 140 SHPWEATGIKYRKIKRDGEIVGYSHYFE 167 (248)
T ss_dssp CCSCBCCGGGCEEEEETTEEEEEEEEEE
T ss_pred cCCccccCceEEEeeecceEeeeeeeee
Confidence 345999985 466888999999987665
No 9
>1ym0_B Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Probab=10.78 E-value=1.1e+02 Score=18.75 Aligned_cols=12 Identities=58% Similarity=1.243 Sum_probs=9.4
Q ss_pred cccccCCCCCCc
Q 018950 4 YDDQEQIELPPG 15 (348)
Q Consensus 4 ~~~~~~~~LPpG 15 (348)
..+...|+||||
T Consensus 16 ysdagdmelppg 27 (27)
T 1ym0_B 16 YSDAGDMELPPG 27 (27)
T ss_dssp STTTTCCCCCCC
T ss_pred cccccccccCCC
Confidence 456678999998
No 10
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=10.46 E-value=1.4e+02 Score=25.54 Aligned_cols=61 Identities=18% Similarity=0.278 Sum_probs=33.8
Q ss_pred CHHHHHHHHhhhhhcCCCCccccee--eccCCCCCCCC------cccccccCCceEEEEEeccccCCCCCcccccccCce
Q 018950 21 TDEELITHYLTPKVFDGCFSARAIG--EVDLNKCEPWD------LPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGY 92 (348)
Q Consensus 21 TDEELI~~YL~~Kv~g~~~~~~~I~--evDly~~ePwd------LP~~~~~ge~eWYFFs~r~rky~~G~R~nRat~~Gy 92 (348)
|+.+-|..||.. ...+|...|. +++--..+|-+ +|+++..|+ -|..+++.-|. ..+|+
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~kgnL~~v~pgk~igG~----vF~NrE~~LP~-------~~~~~ 69 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASKGNLADVAPGKSIGGD----IFSNREGKLPG-------KSGRT 69 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGGTCHHHHSTTCEEEEE----EECCTTCCSCC-------CTTCC
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCcCcHhhcCCCcccCCc----eEecCCCcCCC-------CCCCE
Confidence 455566678876 3346666665 35556677754 455544333 25555444443 23678
Q ss_pred eee
Q 018950 93 WKA 95 (348)
Q Consensus 93 WKa 95 (348)
|+.
T Consensus 70 y~E 72 (143)
T 2c4b_A 70 WRE 72 (143)
T ss_dssp EEE
T ss_pred EEE
Confidence 854
Done!