Query 018951
Match_columns 348
No_of_seqs 250 out of 880
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 05:26:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00744 RINGv The RING-vari 99.7 1.8E-17 4E-22 121.4 3.2 49 201-249 1-49 (49)
2 PHA02825 LAP/PHD finger-like p 99.7 4.9E-17 1.1E-21 145.0 3.9 61 193-256 2-62 (162)
3 PHA02862 5L protein; Provision 99.6 9.7E-17 2.1E-21 141.4 2.4 56 199-257 2-57 (156)
4 PF12906 RINGv: RING-variant d 99.6 6.9E-17 1.5E-21 117.4 1.0 47 202-248 1-47 (47)
5 KOG1609 Protein involved in mR 99.6 1.7E-16 3.8E-21 149.0 3.0 75 190-264 69-145 (323)
6 COG5183 SSM4 Protein involved 99.6 1.4E-15 3E-20 160.8 4.2 66 198-263 11-76 (1175)
7 KOG3053 Uncharacterized conser 99.5 1.2E-15 2.5E-20 145.0 -4.3 64 193-256 14-85 (293)
8 KOG4628 Predicted E3 ubiquitin 98.4 2E-07 4.4E-12 92.7 3.7 49 200-254 230-279 (348)
9 PF13639 zf-RING_2: Ring finge 98.0 2.7E-06 5.7E-11 59.9 1.5 43 200-249 1-44 (44)
10 PHA02929 N1R/p28-like protein; 97.7 3.4E-05 7.3E-10 73.6 3.4 51 198-255 173-229 (238)
11 COG5540 RING-finger-containing 97.5 7.7E-05 1.7E-09 73.6 3.9 51 196-253 320-372 (374)
12 COG5243 HRD1 HRD ubiquitin lig 97.4 0.00012 2.6E-09 73.9 4.1 53 193-252 281-344 (491)
13 PF12678 zf-rbx1: RING-H2 zinc 97.3 0.00014 3.1E-09 57.1 2.2 43 200-249 20-73 (73)
14 cd00162 RING RING-finger (Real 97.2 0.00032 7E-09 47.0 3.2 44 201-251 1-44 (45)
15 PF13920 zf-C3HC4_3: Zinc fing 97.2 0.00016 3.4E-09 52.3 1.6 47 199-254 2-49 (50)
16 PLN03208 E3 ubiquitin-protein 97.1 0.00049 1.1E-08 64.0 4.0 50 198-254 17-80 (193)
17 PF11793 FANCL_C: FANCL C-term 97.0 0.0002 4.3E-09 56.0 0.4 53 199-254 2-67 (70)
18 smart00184 RING Ring finger. E 96.9 0.00075 1.6E-08 43.6 2.6 39 202-248 1-39 (39)
19 PF12861 zf-Apc11: Anaphase-pr 96.8 0.0012 2.5E-08 54.3 3.0 52 199-254 21-83 (85)
20 KOG0802 E3 ubiquitin ligase [P 96.7 0.00092 2E-08 69.9 2.6 50 195-251 287-339 (543)
21 KOG1493 Anaphase-promoting com 96.5 0.00096 2.1E-08 54.2 0.9 50 201-254 22-82 (84)
22 PHA02926 zinc finger-like prot 96.4 0.0026 5.6E-08 60.7 3.5 54 197-255 168-232 (242)
23 KOG0823 Predicted E3 ubiquitin 96.4 0.0044 9.5E-08 59.1 4.6 57 195-258 43-103 (230)
24 PF00097 zf-C3HC4: Zinc finger 96.3 0.0025 5.4E-08 43.8 1.9 41 202-248 1-41 (41)
25 COG5219 Uncharacterized conser 95.9 0.0022 4.7E-08 71.1 0.1 55 197-254 1467-1524(1525)
26 KOG4265 Predicted E3 ubiquitin 95.8 0.012 2.6E-07 59.1 4.9 53 194-254 285-337 (349)
27 smart00504 Ubox Modified RING 95.4 0.017 3.7E-07 42.6 3.3 45 200-253 2-46 (63)
28 PF13923 zf-C3HC4_2: Zinc fing 95.4 0.0091 2E-07 41.1 1.6 38 202-248 1-39 (39)
29 KOG0828 Predicted E3 ubiquitin 95.2 0.012 2.6E-07 61.6 2.6 56 192-253 564-634 (636)
30 KOG0317 Predicted E3 ubiquitin 95.1 0.02 4.3E-07 56.3 3.8 56 191-255 231-286 (293)
31 TIGR00599 rad18 DNA repair pro 94.4 0.024 5.2E-07 57.9 2.5 49 197-254 24-72 (397)
32 KOG0827 Predicted E3 ubiquitin 94.4 0.027 5.8E-07 57.6 2.6 46 199-249 4-52 (465)
33 PF14634 zf-RING_5: zinc-RING 94.4 0.035 7.6E-07 39.3 2.5 42 202-250 2-44 (44)
34 PF14570 zf-RING_4: RING/Ubox 93.1 0.055 1.2E-06 40.2 1.7 46 202-253 1-48 (48)
35 KOG0320 Predicted E3 ubiquitin 92.5 0.33 7.2E-06 45.2 6.3 58 189-253 121-178 (187)
36 COG5194 APC11 Component of SCF 91.6 0.17 3.6E-06 41.7 2.9 27 226-254 56-82 (88)
37 KOG0804 Cytoplasmic Zn-finger 90.2 0.093 2E-06 54.5 0.2 50 195-253 171-222 (493)
38 KOG1734 Predicted RING-contain 89.5 0.074 1.6E-06 52.3 -1.0 58 197-264 222-287 (328)
39 PF05883 Baculo_RING: Baculovi 89.2 0.16 3.4E-06 45.1 0.9 42 198-239 25-68 (134)
40 KOG1645 RING-finger-containing 89.2 0.31 6.8E-06 50.3 3.1 63 197-264 2-70 (463)
41 KOG1785 Tyrosine kinase negati 89.0 0.14 3.1E-06 52.8 0.6 54 195-255 365-418 (563)
42 KOG2930 SCF ubiquitin ligase, 88.2 0.29 6.3E-06 42.1 1.8 27 226-254 83-109 (114)
43 PF15227 zf-C3HC4_4: zinc fing 87.7 0.27 5.9E-06 34.8 1.1 40 202-248 1-42 (42)
44 PF13445 zf-RING_UBOX: RING-ty 87.1 0.39 8.5E-06 34.6 1.7 40 202-246 1-43 (43)
45 KOG0825 PHD Zn-finger protein 86.8 0.35 7.6E-06 53.5 1.9 51 198-255 122-173 (1134)
46 PF04564 U-box: U-box domain; 83.6 0.54 1.2E-05 36.7 1.1 48 199-254 4-51 (73)
47 PLN02638 cellulose synthase A 83.1 1 2.2E-05 51.4 3.4 52 198-255 16-72 (1079)
48 KOG2177 Predicted E3 ubiquitin 83.0 0.5 1.1E-05 41.8 0.8 48 194-250 8-55 (386)
49 KOG4445 Uncharacterized conser 82.9 0.48 1E-05 47.4 0.7 49 200-253 116-186 (368)
50 TIGR00570 cdk7 CDK-activating 82.6 1.2 2.5E-05 44.6 3.2 50 199-254 3-55 (309)
51 PLN02195 cellulose synthase A 81.8 1.3 2.9E-05 50.0 3.7 51 197-253 4-59 (977)
52 PF14569 zf-UDP: Zinc-binding 81.5 1.3 2.9E-05 36.2 2.6 53 197-255 7-64 (80)
53 COG5175 MOT2 Transcriptional r 81.1 1.2 2.5E-05 45.5 2.7 51 197-253 12-64 (480)
54 KOG2164 Predicted E3 ubiquitin 80.4 3.9 8.5E-05 43.4 6.3 58 199-263 186-249 (513)
55 PLN02436 cellulose synthase A 80.3 1.2 2.7E-05 50.7 2.8 51 198-253 35-89 (1094)
56 PLN02189 cellulose synthase 79.6 1.4 3E-05 50.2 2.8 51 198-253 33-87 (1040)
57 PF07800 DUF1644: Protein of u 79.3 2.6 5.7E-05 38.6 4.1 54 198-255 1-93 (162)
58 PLN02400 cellulose synthase 79.1 1.3 2.7E-05 50.7 2.4 51 198-254 35-90 (1085)
59 KOG1039 Predicted E3 ubiquitin 78.9 1.4 3E-05 44.6 2.4 54 197-255 159-223 (344)
60 COG5574 PEX10 RING-finger-cont 78.1 1.9 4E-05 42.4 2.9 49 197-253 213-262 (271)
61 KOG0802 E3 ubiquitin ligase [P 77.0 1.3 2.8E-05 46.7 1.7 53 188-253 468-520 (543)
62 KOG0801 Predicted E3 ubiquitin 75.7 1.5 3.2E-05 40.7 1.4 27 195-221 173-200 (205)
63 KOG3970 Predicted E3 ubiquitin 75.2 2.6 5.6E-05 41.0 3.0 51 197-252 48-104 (299)
64 PF10367 Vps39_2: Vacuolar sor 75.1 1.1 2.3E-05 36.0 0.4 34 197-235 76-109 (109)
65 PF08746 zf-RING-like: RING-li 74.5 1.1 2.3E-05 32.2 0.2 22 227-248 22-43 (43)
66 COG5432 RAD18 RING-finger-cont 71.5 1.7 3.6E-05 43.6 0.8 49 198-255 24-72 (391)
67 KOG1973 Chromatin remodeling p 71.2 1.4 3E-05 42.8 0.1 52 197-252 217-269 (274)
68 PLN02915 cellulose synthase A 69.8 3.2 7E-05 47.4 2.6 51 198-254 14-69 (1044)
69 KOG1952 Transcription factor N 68.6 4.3 9.3E-05 45.5 3.2 60 195-258 187-252 (950)
70 COG5236 Uncharacterized conser 68.6 8 0.00017 39.8 4.8 58 193-257 55-112 (493)
71 PF07297 DPM2: Dolichol phosph 68.4 10 0.00022 30.9 4.6 42 293-335 10-60 (78)
72 KOG0287 Postreplication repair 63.8 2.5 5.5E-05 43.1 0.3 47 199-254 23-69 (442)
73 KOG1428 Inhibitor of type V ad 63.4 6.6 0.00014 46.9 3.4 56 195-255 3482-3546(3738)
74 PF10272 Tmpp129: Putative tra 62.1 6.7 0.00015 40.0 2.9 35 218-255 308-353 (358)
75 KOG1002 Nucleotide excision re 61.1 3.6 7.9E-05 44.2 0.9 52 195-253 532-586 (791)
76 PF12606 RELT: Tumour necrosis 59.0 11 0.00024 28.3 3.0 23 324-346 4-27 (50)
77 KOG1941 Acetylcholine receptor 58.7 2.9 6.3E-05 43.4 -0.3 50 196-250 362-413 (518)
78 KOG4172 Predicted E3 ubiquitin 54.3 5.5 0.00012 30.9 0.7 48 200-254 8-55 (62)
79 KOG0956 PHD finger protein AF1 51.3 6.6 0.00014 43.4 0.9 59 197-255 115-184 (900)
80 KOG3268 Predicted E3 ubiquitin 50.3 13 0.00029 35.1 2.6 57 197-253 163-228 (234)
81 TIGR00847 ccoS cytochrome oxid 47.7 21 0.00045 27.0 2.8 23 323-345 5-28 (51)
82 KOG4692 Predicted E3 ubiquitin 47.4 12 0.00026 38.7 2.0 49 197-254 420-468 (489)
83 KOG0824 Predicted E3 ubiquitin 47.2 14 0.00031 37.1 2.4 46 198-253 6-53 (324)
84 KOG2660 Locus-specific chromos 45.2 9.2 0.0002 38.7 0.8 51 197-255 13-63 (331)
85 PF05290 Baculo_IE-1: Baculovi 44.3 14 0.0003 33.2 1.7 56 198-255 79-134 (140)
86 KOG0955 PHD finger protein BR1 43.6 8.3 0.00018 44.3 0.2 58 194-253 214-271 (1051)
87 PF05297 Herpes_LMP1: Herpesvi 43.2 7.9 0.00017 39.0 0.0 14 293-306 31-44 (381)
88 KOG0956 PHD finger protein AF1 42.4 13 0.00029 41.1 1.6 55 200-255 6-75 (900)
89 PF01440 Gemini_AL2: Geminivir 42.1 3.7 7.9E-05 36.6 -2.3 34 214-250 32-65 (134)
90 KOG4443 Putative transcription 40.3 13 0.00029 40.7 1.1 33 215-249 34-75 (694)
91 PF15013 CCSMST1: CCSMST1 fami 39.5 14 0.00031 30.0 1.0 20 285-304 29-49 (77)
92 KOG3005 GIY-YIG type nuclease 39.4 14 0.0003 36.6 1.0 55 199-253 182-243 (276)
93 KOG3488 Dolichol phosphate-man 38.7 58 0.0013 26.5 4.2 39 294-333 13-59 (81)
94 KOG3899 Uncharacterized conser 36.8 20 0.00043 36.2 1.6 35 219-256 323-368 (381)
95 PF04641 Rtf2: Rtf2 RING-finge 35.4 34 0.00073 32.8 2.9 53 195-255 109-163 (260)
96 PF03597 CcoS: Cytochrome oxid 35.1 47 0.001 24.3 3.0 22 324-345 5-27 (45)
97 KOG1100 Predicted E3 ubiquitin 34.2 27 0.00059 32.9 2.0 41 199-252 158-199 (207)
98 KOG4323 Polycomb-like PHD Zn-f 33.2 20 0.00042 38.0 1.0 60 194-256 163-229 (464)
99 KOG0825 PHD Zn-finger protein 33.1 16 0.00034 41.3 0.3 51 194-249 210-264 (1134)
100 PRK05978 hypothetical protein; 32.3 1.1E+02 0.0025 27.6 5.6 19 235-255 47-65 (148)
101 smart00249 PHD PHD zinc finger 32.1 16 0.00035 24.2 0.2 30 201-234 1-30 (47)
102 COG3197 FixS Uncharacterized p 29.5 56 0.0012 25.4 2.7 24 322-345 4-28 (58)
103 KOG4159 Predicted E3 ubiquitin 23.9 48 0.001 34.4 1.9 51 197-256 82-132 (398)
104 KOG4275 Predicted E3 ubiquitin 23.7 8.9 0.00019 38.6 -3.2 43 199-253 300-342 (350)
105 PF09607 BrkDBD: Brinker DNA-b 22.2 36 0.00078 26.4 0.5 21 220-240 23-49 (58)
106 KOG2034 Vacuolar sorting prote 22.0 38 0.00082 38.5 0.8 38 196-238 814-851 (911)
107 COG5349 Uncharacterized protei 21.1 2.4E+02 0.0051 25.2 5.3 13 243-255 41-53 (126)
108 KOG2114 Vacuolar assembly/sort 21.0 41 0.00089 38.2 0.8 44 200-255 841-885 (933)
109 KOG1940 Zn-finger protein [Gen 20.6 50 0.0011 32.7 1.2 42 202-250 161-204 (276)
No 1
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.68 E-value=1.8e-17 Score=121.36 Aligned_cols=49 Identities=51% Similarity=1.187 Sum_probs=45.7
Q ss_pred eeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccC
Q 018951 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCG 249 (348)
Q Consensus 201 ~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk 249 (348)
+||||++.+++++++++||.|+|+++|||++||.+|+..+++.+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5999999666778999999999999999999999999999999999996
No 2
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.66 E-value=4.9e-17 Score=145.04 Aligned_cols=61 Identities=30% Similarity=0.713 Sum_probs=53.6
Q ss_pred ccccCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeeccc
Q 018951 193 EEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP 256 (348)
Q Consensus 193 ed~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~p 256 (348)
++.++.++.||||+++++ ....||+|+|+++|||++||.+|+..+++..||+|+++|....
T Consensus 2 ~~~s~~~~~CRIC~~~~~---~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~ 62 (162)
T PHA02825 2 EDVSLMDKCCWICKDEYD---VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK 62 (162)
T ss_pred CCcCCCCCeeEecCCCCC---CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE
Confidence 455678899999997643 3568999999999999999999999999999999999998763
No 3
>PHA02862 5L protein; Provisional
Probab=99.62 E-value=9.7e-17 Score=141.41 Aligned_cols=56 Identities=27% Similarity=0.746 Sum_probs=49.8
Q ss_pred CCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeeccce
Q 018951 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPV 257 (348)
Q Consensus 199 e~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~pv 257 (348)
.+.||||+++++++ ..||.|+|+++|||++||.+|++.+++.+||+|+++|...+.
T Consensus 2 ~diCWIC~~~~~e~---~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~ 57 (156)
T PHA02862 2 SDICWICNDVCDER---NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKT 57 (156)
T ss_pred CCEEEEecCcCCCC---cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEc
Confidence 46899999876443 699999999999999999999999999999999999987653
No 4
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.62 E-value=6.9e-17 Score=117.39 Aligned_cols=47 Identities=47% Similarity=1.128 Sum_probs=38.8
Q ss_pred eEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCcccccc
Q 018951 202 CRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVC 248 (348)
Q Consensus 202 CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElC 248 (348)
||||+++++++++|+.||.|+|+++|||++||++|+..+++.+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 99999987766689999999999999999999999999999999998
No 5
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.61 E-value=1.7e-16 Score=149.03 Aligned_cols=75 Identities=40% Similarity=0.737 Sum_probs=63.0
Q ss_pred CCCccccCCCCeeEEeccCCCCCC--eeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeeccceehhccCc
Q 018951 190 NNDEEIAEEEAVCRICLDICEEGN--TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPVTLLRMSS 264 (348)
Q Consensus 190 ~~~ed~~eee~~CRICl~~~eeg~--~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~pv~llr~~~ 264 (348)
++.++.+.++..||||+++.++.+ .++.||.|+|++++||+.|+++|+..+++..||+|++.|.+..+...++..
T Consensus 69 ~~~~~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~~~~ 145 (323)
T KOG1609|consen 69 ESLEESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKPLIV 145 (323)
T ss_pred CccccCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeecceee
Confidence 455666666899999998765443 799999999999999999999999999999999999999988765544443
No 6
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.56 E-value=1.4e-15 Score=160.84 Aligned_cols=66 Identities=27% Similarity=0.699 Sum_probs=60.0
Q ss_pred CCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeeccceehhccC
Q 018951 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPVTLLRMS 263 (348)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~pv~llr~~ 263 (348)
+.+.||||+.++.+|++|.+||+|.|+++|+|++||..|+..+++++||+|+++|++.-++.-.|+
T Consensus 11 d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~mP 76 (1175)
T COG5183 11 DKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKEDMP 76 (1175)
T ss_pred cchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecccCCC
Confidence 348999999998889999999999999999999999999999999999999999999877655444
No 7
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=1.2e-15 Score=144.98 Aligned_cols=64 Identities=28% Similarity=0.634 Sum_probs=54.0
Q ss_pred ccccCCCCeeEEeccCCCCCC--eeeccCcccCcccccCHHHHHHHHHHcC------CccccccCceeeccc
Q 018951 193 EEIAEEEAVCRICLDICEEGN--TLKMECSCKGALRLVHEECAIRWFSTKG------NKNCEVCGKEVQNLP 256 (348)
Q Consensus 193 ed~~eee~~CRICl~~~eeg~--~Li~PC~CkGslk~VH~~CL~kWl~~k~------~~~CElCk~~y~~~p 256 (348)
.+..+.|+.||||+..+++.. .++.||.|+|+.||||+.||.+|+.+|. ...|++|+++|..+-
T Consensus 14 ~~~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~ 85 (293)
T KOG3053|consen 14 SDNQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVF 85 (293)
T ss_pred CCccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeec
Confidence 466678999999998654421 4799999999999999999999998874 379999999998763
No 8
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=2e-07 Score=92.68 Aligned_cols=49 Identities=31% Similarity=0.817 Sum_probs=43.0
Q ss_pred CeeEEeccCCCCCCee-eccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018951 200 AVCRICLDICEEGNTL-KMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 200 ~~CRICl~~~eeg~~L-i~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
..|-||+|++++|+.| ++||+ |.+|..|++.||... ...|++||++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCC
Confidence 7999999999888876 69999 589999999999887 4679999998654
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.99 E-value=2.7e-06 Score=59.95 Aligned_cols=43 Identities=30% Similarity=0.885 Sum_probs=33.5
Q ss_pred CeeEEeccCCCC-CCeeeccCcccCcccccCHHHHHHHHHHcCCccccccC
Q 018951 200 AVCRICLDICEE-GNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCG 249 (348)
Q Consensus 200 ~~CRICl~~~ee-g~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk 249 (348)
+.|-||+++.+. +....++|. +.+|.+|+.+|++.+ ..|++|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCG-----HVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTS-----EEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCC-----CeeCHHHHHHHHHhC--CcCCccC
Confidence 369999988753 445678875 699999999999885 4999996
No 10
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.65 E-value=3.4e-05 Score=73.56 Aligned_cols=51 Identities=22% Similarity=0.589 Sum_probs=38.9
Q ss_pred CCCeeEEeccCCCCCC------eeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeecc
Q 018951 198 EEAVCRICLDICEEGN------TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (348)
Q Consensus 198 ee~~CRICl~~~eeg~------~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~ 255 (348)
.+..|-||++...+++ ....+|. |.+|..|+.+|+..+ .+||+|+..+..+
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~~--~tCPlCR~~~~~v 229 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKEK--NTCPVCRTPFISV 229 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhcC--CCCCCCCCEeeEE
Confidence 3578999998643322 2445676 699999999999764 5999999998755
No 11
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=7.7e-05 Score=73.58 Aligned_cols=51 Identities=22% Similarity=0.615 Sum_probs=40.8
Q ss_pred cCCCCeeEEeccCCCCCC-eeeccCcccCcccccCHHHHHHHHH-HcCCccccccCceee
Q 018951 196 AEEEAVCRICLDICEEGN-TLKMECSCKGALRLVHEECAIRWFS-TKGNKNCEVCGKEVQ 253 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~-~Li~PC~CkGslk~VH~~CL~kWl~-~k~~~~CElCk~~y~ 253 (348)
.+.+-.|-||++....++ -.++||+ +-+|..|+++|+. .+ ..|++|++++.
T Consensus 320 a~~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~y~--~~CPvCrt~iP 372 (374)
T COG5540 320 ADKGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLGYS--NKCPVCRTAIP 372 (374)
T ss_pred cCCCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhhhc--ccCCccCCCCC
Confidence 345689999998765444 4579999 5899999999997 54 49999999864
No 12
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00012 Score=73.90 Aligned_cols=53 Identities=23% Similarity=0.772 Sum_probs=41.3
Q ss_pred ccccCCCCeeEEeccCC-CCC----------CeeeccCcccCcccccCHHHHHHHHHHcCCccccccCcee
Q 018951 193 EEIAEEEAVCRICLDIC-EEG----------NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252 (348)
Q Consensus 193 ed~~eee~~CRICl~~~-eeg----------~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y 252 (348)
|.-...+..|-||+++- ..+ .+-.+||. +..|-+||+.|+..++ +|++|+.++
T Consensus 281 eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ERqQ--TCPICr~p~ 344 (491)
T COG5243 281 EQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLERQQ--TCPICRRPV 344 (491)
T ss_pred hhhcCCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHhcc--CCCcccCcc
Confidence 34456688999999872 222 24578998 5999999999998765 999999984
No 13
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.29 E-value=0.00014 Score=57.10 Aligned_cols=43 Identities=23% Similarity=0.681 Sum_probs=30.3
Q ss_pred CeeEEeccCCCC--------C--Ce-eeccCcccCcccccCHHHHHHHHHHcCCccccccC
Q 018951 200 AVCRICLDICEE--------G--NT-LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCG 249 (348)
Q Consensus 200 ~~CRICl~~~ee--------g--~~-Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk 249 (348)
+.|-||++...+ + -+ ...+|. +.+|..||.+|+..+. +|++|+
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-----H~FH~~Ci~~Wl~~~~--~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCG-----HIFHFHCISQWLKQNN--TCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTS-----EEEEHHHHHHHHTTSS--B-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccC-----CCEEHHHHHHHHhcCC--cCCCCC
Confidence 349999976521 1 22 235776 6999999999997754 999996
No 14
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.23 E-value=0.00032 Score=47.05 Aligned_cols=44 Identities=23% Similarity=0.764 Sum_probs=33.2
Q ss_pred eeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCce
Q 018951 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKE 251 (348)
Q Consensus 201 ~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~ 251 (348)
.|-||++... ......+|. +.+|..|+.+|+.. ++..|++|+..
T Consensus 1 ~C~iC~~~~~-~~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFR-EPVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhh-CceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 4889987652 233455687 57999999999987 55689999875
No 15
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=97.22 E-value=0.00016 Score=52.28 Aligned_cols=47 Identities=28% Similarity=0.723 Sum_probs=37.1
Q ss_pred CCeeEEeccCCCCCCeeeccCcccCcccc-cCHHHHHHHHHHcCCccccccCceeec
Q 018951 199 EAVCRICLDICEEGNTLKMECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 199 e~~CRICl~~~eeg~~Li~PC~CkGslk~-VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+..|.||++.. .+.+..||.. . +...|+.+|+. ....|++|++++..
T Consensus 2 ~~~C~iC~~~~--~~~~~~pCgH-----~~~C~~C~~~~~~--~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENP--RDVVLLPCGH-----LCFCEECAERLLK--RKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSB--SSEEEETTCE-----EEEEHHHHHHHHH--TTSBBTTTTBB-SE
T ss_pred cCCCccCCccC--CceEEeCCCC-----hHHHHHHhHHhcc--cCCCCCcCChhhcC
Confidence 56799999863 3578899984 5 89999999999 46799999998764
No 16
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.09 E-value=0.00049 Score=63.95 Aligned_cols=50 Identities=26% Similarity=0.613 Sum_probs=39.6
Q ss_pred CCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHc--------------CCccccccCceeec
Q 018951 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK--------------GNKNCEVCGKEVQN 254 (348)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k--------------~~~~CElCk~~y~~ 254 (348)
++-.|-||++.. .++.+.+|. +.++..||.+|+..+ +...|++|+.++..
T Consensus 17 ~~~~CpICld~~--~dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQV--RDPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcC--CCcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 457899999864 357888987 699999999998642 24689999999753
No 17
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.00 E-value=0.0002 Score=56.05 Aligned_cols=53 Identities=26% Similarity=0.619 Sum_probs=24.8
Q ss_pred CCeeEEeccCCC-CCCeeeccC---cccCcccccCHHHHHHHHHHcC---------CccccccCceeec
Q 018951 199 EAVCRICLDICE-EGNTLKMEC---SCKGALRLVHEECAIRWFSTKG---------NKNCEVCGKEVQN 254 (348)
Q Consensus 199 e~~CRICl~~~e-eg~~Li~PC---~CkGslk~VH~~CL~kWl~~k~---------~~~CElCk~~y~~ 254 (348)
+..|.||++... .++....-| .|+ +.+|..||.+||.... .-.|+.|+.++..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~---~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCG---KKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccC---CHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 457999997643 333223334 565 5899999999997531 1379999999863
No 18
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.91 E-value=0.00075 Score=43.60 Aligned_cols=39 Identities=28% Similarity=0.907 Sum_probs=31.0
Q ss_pred eEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCcccccc
Q 018951 202 CRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVC 248 (348)
Q Consensus 202 CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElC 248 (348)
|.||++. ..+....||. +.+|..|+.+|+. .+...|++|
T Consensus 1 C~iC~~~--~~~~~~~~C~-----H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE--LKDPVVLPCG-----HTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccC--CCCcEEecCC-----ChHHHHHHHHHHH-hCcCCCCCC
Confidence 6789876 3467788987 4799999999998 455689887
No 19
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.75 E-value=0.0012 Score=54.32 Aligned_cols=52 Identities=27% Similarity=0.661 Sum_probs=37.6
Q ss_pred CCeeEEeccCCCC--------CC--eeeccCcccCcccccCHHHHHHHHHHc-CCccccccCceeec
Q 018951 199 EAVCRICLDICEE--------GN--TLKMECSCKGALRLVHEECAIRWFSTK-GNKNCEVCGKEVQN 254 (348)
Q Consensus 199 e~~CRICl~~~ee--------g~--~Li~PC~CkGslk~VH~~CL~kWl~~k-~~~~CElCk~~y~~ 254 (348)
+..|-||+...+. |+ +++ =+.|. +.+|..||.+|++.. .+..|++|++++++
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~---H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKCS---HNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCcee-eccCc---cHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 5679999865431 22 332 23554 699999999999874 46799999999875
No 20
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.00092 Score=69.87 Aligned_cols=50 Identities=28% Similarity=0.830 Sum_probs=40.5
Q ss_pred ccCCCCeeEEeccCCCCC-C--eeeccCcccCcccccCHHHHHHHHHHcCCccccccCce
Q 018951 195 IAEEEAVCRICLDICEEG-N--TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKE 251 (348)
Q Consensus 195 ~~eee~~CRICl~~~eeg-~--~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~ 251 (348)
.......|.||+++...+ + +-++||. +.+|..||.+|+..+ .+|++|+..
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er~--qtCP~CR~~ 339 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFERQ--QTCPTCRTV 339 (543)
T ss_pred hhhcCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHHh--CcCCcchhh
Confidence 445678999999875432 2 5689998 699999999999995 499999994
No 21
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.00096 Score=54.16 Aligned_cols=50 Identities=26% Similarity=0.656 Sum_probs=38.3
Q ss_pred eeEEeccCCC--------CCC--eeeccCcccCcccccCHHHHHHHHHHcC-CccccccCceeec
Q 018951 201 VCRICLDICE--------EGN--TLKMECSCKGALRLVHEECAIRWFSTKG-NKNCEVCGKEVQN 254 (348)
Q Consensus 201 ~CRICl~~~e--------eg~--~Li~PC~CkGslk~VH~~CL~kWl~~k~-~~~CElCk~~y~~ 254 (348)
+|-||....+ .|+ +|+.. .|. +.+|..|+.+|+..++ ...|++|++++++
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~---h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWG-YCL---HAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHH-HHH---HHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 8999986643 122 66655 553 6999999999998765 4799999999875
No 22
>PHA02926 zinc finger-like protein; Provisional
Probab=96.42 E-value=0.0026 Score=60.67 Aligned_cols=54 Identities=24% Similarity=0.658 Sum_probs=40.6
Q ss_pred CCCCeeEEeccCCCC----CC---eeeccCcccCcccccCHHHHHHHHHHcC----CccccccCceeecc
Q 018951 197 EEEAVCRICLDICEE----GN---TLKMECSCKGALRLVHEECAIRWFSTKG----NKNCEVCGKEVQNL 255 (348)
Q Consensus 197 eee~~CRICl~~~ee----g~---~Li~PC~CkGslk~VH~~CL~kWl~~k~----~~~CElCk~~y~~~ 255 (348)
..+.+|-||++.-.+ ++ .+..+|. |.+...|+.+|.+.+. ...||+|+..+.++
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 456889999976311 11 3566787 5899999999998642 46799999999866
No 23
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0044 Score=59.06 Aligned_cols=57 Identities=30% Similarity=0.638 Sum_probs=45.7
Q ss_pred ccCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcC-CccccccCceee---cccee
Q 018951 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKG-NKNCEVCGKEVQ---NLPVT 258 (348)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~-~~~CElCk~~y~---~~pv~ 258 (348)
.+...-.|-||++.. .+++++.|. |++==-||-+|+.... .+.|++||.++. .+|++
T Consensus 43 ~~~~~FdCNICLd~a--kdPVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 43 RDGGFFDCNICLDLA--KDPVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCCCceeeeeecccc--CCCEEeecc-----cceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 456677899999874 468999998 5888899999998875 467899999976 44554
No 24
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.30 E-value=0.0025 Score=43.77 Aligned_cols=41 Identities=27% Similarity=0.882 Sum_probs=33.2
Q ss_pred eEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCcccccc
Q 018951 202 CRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVC 248 (348)
Q Consensus 202 CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElC 248 (348)
|.||++..++ .....+|. +.++..|+.+|++..+...|++|
T Consensus 1 C~iC~~~~~~-~~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFED-PVILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSS-EEEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccC-CCEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 7799886543 22489998 58999999999998778899988
No 25
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.89 E-value=0.0022 Score=71.09 Aligned_cols=55 Identities=27% Similarity=0.798 Sum_probs=38.6
Q ss_pred CCCCeeEEeccCCC-CCCeee-ccC-cccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018951 197 EEEAVCRICLDICE-EGNTLK-MEC-SCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 197 eee~~CRICl~~~e-eg~~Li-~PC-~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+....|.||+.--+ -+..+- .-| -|| .-+|-.||-+|++.+++.+|++|+.++.+
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCk---nKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCK---NKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhh---hhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 34566999996432 112221 112 244 47999999999999999999999988764
No 26
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.012 Score=59.09 Aligned_cols=53 Identities=23% Similarity=0.525 Sum_probs=39.1
Q ss_pred cccCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018951 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 194 d~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
++.+++..|-||+.+ ..+.+++||+.- ..=..|.+.-.-. ...|++|++.+.-
T Consensus 285 ~~~~~gkeCVIClse--~rdt~vLPCRHL----CLCs~Ca~~Lr~q--~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 285 DESESGKECVICLSE--SRDTVVLPCRHL----CLCSGCAKSLRYQ--TNNCPICRQPIEE 337 (349)
T ss_pred ccccCCCeeEEEecC--CcceEEecchhh----ehhHhHHHHHHHh--hcCCCccccchHh
Confidence 355778999999976 457899997742 4445788776533 3489999999874
No 27
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=95.41 E-value=0.017 Score=42.61 Aligned_cols=45 Identities=13% Similarity=0.400 Sum_probs=36.6
Q ss_pred CeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018951 200 AVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 200 ~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
-.|.||.+.-+ ++++.||. +.+-+.|+.+|+.. +.+|++|+.++.
T Consensus 2 ~~Cpi~~~~~~--~Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMK--DPVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCC--CCEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 46999987643 57888874 68999999999987 458999998764
No 28
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=95.37 E-value=0.0091 Score=41.08 Aligned_cols=38 Identities=32% Similarity=0.818 Sum_probs=29.4
Q ss_pred eEEeccCCCCCCe-eeccCcccCcccccCHHHHHHHHHHcCCcccccc
Q 018951 202 CRICLDICEEGNT-LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVC 248 (348)
Q Consensus 202 CRICl~~~eeg~~-Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElC 248 (348)
|-||++... ++ ...+|. +.+.++|+.+|+.. +..|++|
T Consensus 1 C~iC~~~~~--~~~~~~~CG-----H~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR--DPVVVTPCG-----HSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-S--SEEEECTTS-----EEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCccc--CcCEECCCC-----CchhHHHHHHHHHC--cCCCcCC
Confidence 778987643 46 578998 58999999999988 3699988
No 29
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.012 Score=61.58 Aligned_cols=56 Identities=25% Similarity=0.633 Sum_probs=40.6
Q ss_pred CccccCCCCeeEEeccCCC---CC------------CeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018951 192 DEEIAEEEAVCRICLDICE---EG------------NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 192 ~ed~~eee~~CRICl~~~e---eg------------~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
+|.-.+....|-||+..-+ .+ +-+..||. +.+|..||++|...- +..|++|+.+..
T Consensus 564 ~~~~~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~y-kl~CPvCR~pLP 634 (636)
T KOG0828|consen 564 LEAFVRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTY-KLICPVCRCPLP 634 (636)
T ss_pred ccchhhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhh-cccCCccCCCCC
Confidence 3444566788999996532 11 23456998 599999999999843 369999998754
No 30
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.02 Score=56.32 Aligned_cols=56 Identities=25% Similarity=0.598 Sum_probs=45.5
Q ss_pred CCccccCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeecc
Q 018951 191 NDEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (348)
Q Consensus 191 ~~ed~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~ 255 (348)
++..+++....|-+|++.- .++--+||. +.+=-.|+..|...+. .|++|+.+++--
T Consensus 231 ~~~~i~~a~~kC~LCLe~~--~~pSaTpCG-----HiFCWsCI~~w~~ek~--eCPlCR~~~~ps 286 (293)
T KOG0317|consen 231 SLSSIPEATRKCSLCLENR--SNPSATPCG-----HIFCWSCILEWCSEKA--ECPLCREKFQPS 286 (293)
T ss_pred CCccCCCCCCceEEEecCC--CCCCcCcCc-----chHHHHHHHHHHcccc--CCCcccccCCCc
Confidence 4556777789999999863 357788998 5888899999999976 699999998743
No 31
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.44 E-value=0.024 Score=57.92 Aligned_cols=49 Identities=27% Similarity=0.577 Sum_probs=40.0
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018951 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+....|.||++... ++.+.||. +.+...|+..|+... ..|++|+..+..
T Consensus 24 e~~l~C~IC~d~~~--~PvitpCg-----H~FCs~CI~~~l~~~--~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFD--VPVLTSCS-----HTFCSLCIRRCLSNQ--PKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhh--CccCCCCC-----CchhHHHHHHHHhCC--CCCCCCCCcccc
Confidence 45679999998653 57788998 589999999999874 389999998763
No 32
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.37 E-value=0.027 Score=57.63 Aligned_cols=46 Identities=28% Similarity=0.775 Sum_probs=33.4
Q ss_pred CCeeEEeccCCCCCCee--eccCcccCcccccCHHHHHHHHHHcCC-ccccccC
Q 018951 199 EAVCRICLDICEEGNTL--KMECSCKGALRLVHEECAIRWFSTKGN-KNCEVCG 249 (348)
Q Consensus 199 e~~CRICl~~~eeg~~L--i~PC~CkGslk~VH~~CL~kWl~~k~~-~~CElCk 249 (348)
.+.|.||-+.......+ +.-|. +.+|..||.+||..... +.||+|+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cG-----hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCG-----HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchh-----hHHHHHHHHHHHccCCccCCCCcee
Confidence 46899995543322222 44565 59999999999987654 7999999
No 33
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=94.36 E-value=0.035 Score=39.26 Aligned_cols=42 Identities=24% Similarity=0.630 Sum_probs=34.7
Q ss_pred eEEeccCCC-CCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCc
Q 018951 202 CRICLDICE-EGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGK 250 (348)
Q Consensus 202 CRICl~~~e-eg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~ 250 (348)
|-||++... +..+++++|. +.+.+.|+.++. .....|++|++
T Consensus 2 C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 789998873 3457889998 699999999998 55689999985
No 34
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.08 E-value=0.055 Score=40.21 Aligned_cols=46 Identities=17% Similarity=0.504 Sum_probs=23.2
Q ss_pred eEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHc--CCccccccCceee
Q 018951 202 CRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK--GNKNCEVCGKEVQ 253 (348)
Q Consensus 202 CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k--~~~~CElCk~~y~ 253 (348)
|.+|.+..++.+.-..||.|. ++-|+.=|.... .+..|+-||.+|.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 567876655444557899995 568888888876 3689999999984
No 35
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.52 E-value=0.33 Score=45.15 Aligned_cols=58 Identities=22% Similarity=0.507 Sum_probs=44.1
Q ss_pred CCCCccccCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018951 189 ENNDEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 189 e~~~ed~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
.+.++...+.-.-|-||++..++..++-.-|. +.|=.+|++.-++. ...|++|+.++.
T Consensus 121 k~v~~~~~~~~~~CPiCl~~~sek~~vsTkCG-----HvFC~~Cik~alk~--~~~CP~C~kkIt 178 (187)
T KOG0320|consen 121 KDVDPLRKEGTYKCPICLDSVSEKVPVSTKCG-----HVFCSQCIKDALKN--TNKCPTCRKKIT 178 (187)
T ss_pred ccccccccccccCCCceecchhhccccccccc-----hhHHHHHHHHHHHh--CCCCCCcccccc
Confidence 44555666667899999998776556557776 58889999988766 469999998643
No 36
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=91.63 E-value=0.17 Score=41.71 Aligned_cols=27 Identities=30% Similarity=0.655 Sum_probs=24.6
Q ss_pred cccCHHHHHHHHHHcCCccccccCceeec
Q 018951 226 RLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 226 k~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+.+|-.|+.+||..++ .|++|+++++.
T Consensus 56 HaFH~HCI~rWL~Tk~--~CPld~q~w~~ 82 (88)
T COG5194 56 HAFHDHCIYRWLDTKG--VCPLDRQTWVL 82 (88)
T ss_pred hHHHHHHHHHHHhhCC--CCCCCCceeEE
Confidence 5899999999999976 99999999874
No 37
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.16 E-value=0.093 Score=54.53 Aligned_cols=50 Identities=24% Similarity=0.665 Sum_probs=36.4
Q ss_pred ccCCCCeeEEeccCCCCC--CeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018951 195 IAEEEAVCRICLDICEEG--NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 195 ~~eee~~CRICl~~~eeg--~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
...|-+.|-+|++.-++. ..+-..|. +-+|..|+++|-.. +|++|++--.
T Consensus 171 ~~tELPTCpVCLERMD~s~~gi~t~~c~-----Hsfh~~cl~~w~~~----scpvcR~~q~ 222 (493)
T KOG0804|consen 171 GLTELPTCPVCLERMDSSTTGILTILCN-----HSFHCSCLMKWWDS----SCPVCRYCQS 222 (493)
T ss_pred CcccCCCcchhHhhcCccccceeeeecc-----cccchHHHhhcccC----cChhhhhhcC
Confidence 346779999999765432 24556777 58999999999654 7888876644
No 38
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.48 E-value=0.074 Score=52.34 Aligned_cols=58 Identities=34% Similarity=0.689 Sum_probs=42.2
Q ss_pred CCCCeeEEeccCC-----CC---CCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeeccceehhccCc
Q 018951 197 EEEAVCRICLDIC-----EE---GNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPVTLLRMSS 264 (348)
Q Consensus 197 eee~~CRICl~~~-----ee---g~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~pv~llr~~~ 264 (348)
.++.+|-+|-..- ++ ++.-.+-|+ +.+|+.|+.-|--.-.+.+|+-||.++. +.||.+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCn-----HvFHEfCIrGWcivGKkqtCPYCKekVd-----l~rmfs 287 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCN-----HVFHEFCIRGWCIVGKKQTCPYCKEKVD-----LKRMFS 287 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecc-----cchHHHhhhhheeecCCCCCchHHHHhh-----Hhhhcc
Confidence 3457899997432 11 144567788 5999999999987777789999999865 455554
No 39
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=89.23 E-value=0.16 Score=45.12 Aligned_cols=42 Identities=19% Similarity=0.463 Sum_probs=29.4
Q ss_pred CCCeeEEeccCCCC-CCeeeccCcccCcc-cccCHHHHHHHHHH
Q 018951 198 EEAVCRICLDICEE-GNTLKMECSCKGAL-RLVHEECAIRWFST 239 (348)
Q Consensus 198 ee~~CRICl~~~ee-g~~Li~PC~CkGsl-k~VH~~CL~kWl~~ 239 (348)
-...|+||++.-.. +..+..+|...-.+ +.+|.+|+.+|-+.
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 35789999987544 44556676654433 57899999999544
No 40
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.20 E-value=0.31 Score=50.32 Aligned_cols=63 Identities=27% Similarity=0.653 Sum_probs=44.9
Q ss_pred CCCCeeEEeccCCC-CCC-eeecc-CcccCcccccCHHHHHHHHHHcCCccccccCceeec---cceehhccCc
Q 018951 197 EEEAVCRICLDICE-EGN-TLKME-CSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN---LPVTLLRMSS 264 (348)
Q Consensus 197 eee~~CRICl~~~e-eg~-~Li~P-C~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~---~pv~llr~~~ 264 (348)
+.+.+|-||+++.+ .|| .++.| |. +.+-.+|+++|+..+....|++|+.+... .|.+.+|+.+
T Consensus 2 d~g~tcpiclds~~~~g~hr~vsl~cg-----hlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa 70 (463)
T KOG1645|consen 2 DCGTTCPICLDSYTTAGNHRIVSLQCG-----HLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA 70 (463)
T ss_pred CccccCceeeeeeeecCceEEeeeccc-----ccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence 34678999999864 455 34433 54 58999999999976667899999988542 2445556543
No 41
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=88.99 E-value=0.14 Score=52.75 Aligned_cols=54 Identities=19% Similarity=0.583 Sum_probs=42.4
Q ss_pred ccCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeecc
Q 018951 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (348)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~ 255 (348)
....-..|.||-+. +.+.-|-||. ++.-..||..|....+..+|+.|+.+++-.
T Consensus 365 MgsTFeLCKICaen--dKdvkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 365 MGSTFELCKICAEN--DKDVKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred ccchHHHHHHhhcc--CCCccccccc-----chHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 33445789999765 3345678998 477889999999888788999999998854
No 42
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=88.16 E-value=0.29 Score=42.06 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=23.8
Q ss_pred cccCHHHHHHHHHHcCCccccccCceeec
Q 018951 226 RLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 226 k~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+.+|..|+-+||+.++ .||+|.++..+
T Consensus 83 HaFH~hCisrWlktr~--vCPLdn~eW~~ 109 (114)
T KOG2930|consen 83 HAFHFHCISRWLKTRN--VCPLDNKEWVF 109 (114)
T ss_pred hHHHHHHHHHHHhhcC--cCCCcCcceeE
Confidence 5899999999999965 99999988654
No 43
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=87.70 E-value=0.27 Score=34.84 Aligned_cols=40 Identities=25% Similarity=0.733 Sum_probs=28.4
Q ss_pred eEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCC--cccccc
Q 018951 202 CRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGN--KNCEVC 248 (348)
Q Consensus 202 CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~--~~CElC 248 (348)
|-||++-.. +++.++|. +.+=+.||.+|.+..+. ..|++|
T Consensus 1 CpiC~~~~~--~Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK--DPVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S--SEEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC--CccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 778987643 68999997 57889999999977654 589887
No 44
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=87.06 E-value=0.39 Score=34.57 Aligned_cols=40 Identities=20% Similarity=0.600 Sum_probs=22.5
Q ss_pred eEEeccCCCCCC-eeeccCcccCcccccCHHHHHHHHHHc--CCcccc
Q 018951 202 CRICLDICEEGN-TLKMECSCKGALRLVHEECAIRWFSTK--GNKNCE 246 (348)
Q Consensus 202 CRICl~~~eeg~-~Li~PC~CkGslk~VH~~CL~kWl~~k--~~~~CE 246 (348)
|-||++..++++ +.++||. +.+=++||++|.+.+ +..+|+
T Consensus 1 CpIc~e~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKEFSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT----TTSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCccccccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeCc
Confidence 678887333333 7889987 588899999999875 456664
No 45
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=86.81 E-value=0.35 Score=53.49 Aligned_cols=51 Identities=24% Similarity=0.442 Sum_probs=37.1
Q ss_pred CCCeeEEeccCCCCCC-eeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeecc
Q 018951 198 EEAVCRICLDICEEGN-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (348)
Q Consensus 198 ee~~CRICl~~~eeg~-~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~ 255 (348)
....|-+|+...-++. .-..+|.| |+|..|+..|-+.-+ +|++|+.+|..+
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H-----~FC~~Ci~sWsR~aq--TCPiDR~EF~~v 173 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAH-----YFCEECVGSWSRCAQ--TCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhHHHHHHHHHhhcccccccc-----ccHHHHhhhhhhhcc--cCchhhhhhhee
Confidence 3466777775442221 12456876 999999999998865 999999998755
No 46
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=83.61 E-value=0.54 Score=36.66 Aligned_cols=48 Identities=10% Similarity=0.262 Sum_probs=33.9
Q ss_pred CCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018951 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 199 e~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+-.|-||++-- .++.+.||. +.+=+.|+++|+.. +..+|++|+..+..
T Consensus 4 ~f~CpIt~~lM--~dPVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELM--RDPVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB---SSEEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHh--hCceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCCc
Confidence 34688887653 468899876 58999999999988 45799999887653
No 47
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=83.15 E-value=1 Score=51.39 Aligned_cols=52 Identities=25% Similarity=0.479 Sum_probs=35.6
Q ss_pred CCCeeEEeccCC---CCCCeee--ccCcccCcccccCHHHHHHHHHHcCCccccccCceeecc
Q 018951 198 EEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (348)
Q Consensus 198 ee~~CRICl~~~---eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~ 255 (348)
...+|+||-++- .+|+.++ ..|. --|=+.|.+- =+..|+..|+.||++|+-.
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~-----FPVCrpCYEY-Er~eG~q~CPqCktrYkr~ 72 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCA-----FPVCRPCYEY-ERKDGNQSCPQCKTKYKRH 72 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCC-----Cccccchhhh-hhhcCCccCCccCCchhhh
Confidence 456999998762 4567765 4662 1244589843 3344789999999999943
No 48
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.95 E-value=0.5 Score=41.81 Aligned_cols=48 Identities=31% Similarity=0.715 Sum_probs=39.0
Q ss_pred cccCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCc
Q 018951 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGK 250 (348)
Q Consensus 194 d~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~ 250 (348)
+..+++-.|.||++...+ +.+.||. +.+=+.|+..|+. ....|+.|+.
T Consensus 8 ~~~~~~~~C~iC~~~~~~--p~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYFRE--PVLLPCG-----HNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred hhccccccChhhHHHhhc--Ccccccc-----chHhHHHHHHhcC--CCcCCcccCC
Confidence 445678899999987654 3788998 5778899999998 6789999994
No 49
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=82.90 E-value=0.48 Score=47.42 Aligned_cols=49 Identities=22% Similarity=0.512 Sum_probs=35.4
Q ss_pred CeeEEeccCCCCCC-eeeccCcccCcccccCHHHHHHHHHHc---------------------CCccccccCceee
Q 018951 200 AVCRICLDICEEGN-TLKMECSCKGALRLVHEECAIRWFSTK---------------------GNKNCEVCGKEVQ 253 (348)
Q Consensus 200 ~~CRICl~~~eeg~-~Li~PC~CkGslk~VH~~CL~kWl~~k---------------------~~~~CElCk~~y~ 253 (348)
..|-||+=..-+++ -.+.+|- +|+|..||.++|.+- -...|++|+..+.
T Consensus 116 gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 45888885543344 4578998 699999998887542 1357999998865
No 50
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.64 E-value=1.2 Score=44.61 Aligned_cols=50 Identities=18% Similarity=0.455 Sum_probs=35.9
Q ss_pred CCeeEEeccCC-C-CC-CeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018951 199 EAVCRICLDIC-E-EG-NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 199 e~~CRICl~~~-e-eg-~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+..|-||.... . .. ..++.+|. |-+=..|+.+.+.. +...|++|+..+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~~-~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhcC-CCCCCCCCCCccch
Confidence 36799999753 2 21 23567886 47778999997644 55799999988764
No 51
>PLN02195 cellulose synthase A
Probab=81.82 E-value=1.3 Score=50.02 Aligned_cols=51 Identities=24% Similarity=0.495 Sum_probs=35.3
Q ss_pred CCCCeeEEeccCC---CCCCeee--ccCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018951 197 EEEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 197 eee~~CRICl~~~---eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
....+|+||-+.- ..|++++ ..|. --|=+.|.+- =+..|+..|+.||++|+
T Consensus 4 ~~~~~c~~cgd~~~~~~~g~~fvaC~eC~-----~pvCrpCyey-er~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 4 SGAPICATCGEEVGVDSNGEAFVACHECS-----YPLCKACLEY-EIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCCccceecccccCcCCCCCeEEEeccCC-----Cccccchhhh-hhhcCCccCCccCCccc
Confidence 3456899998752 3567765 4562 2355589843 34458899999999998
No 52
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=81.50 E-value=1.3 Score=36.18 Aligned_cols=53 Identities=26% Similarity=0.473 Sum_probs=23.2
Q ss_pred CCCCeeEEeccCC---CCCCeee--ccCcccCcccccCHHHHHHHHHHcCCccccccCceeecc
Q 018951 197 EEEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (348)
Q Consensus 197 eee~~CRICl~~~---eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~ 255 (348)
-...+|.||-+.- ..|+.++ +.|. --|=+.|.+-=++. |+..|+.|+++|.-.
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~-----fPvCr~CyEYErke-g~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECA-----FPVCRPCYEYERKE-GNQVCPQCKTRYKRH 64 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS----------HHHHHHHHHT-S-SB-TTT--B----
T ss_pred cCCcccccccCccccCCCCCEEEEEcccC-----CccchhHHHHHhhc-CcccccccCCCcccc
Confidence 3467899998652 3566665 3444 35677898765554 789999999999854
No 53
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=81.10 E-value=1.2 Score=45.49 Aligned_cols=51 Identities=20% Similarity=0.615 Sum_probs=37.1
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcC--CccccccCceee
Q 018951 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKG--NKNCEVCGKEVQ 253 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~--~~~CElCk~~y~ 253 (348)
+|++.|-.|.++-+-.+.-..||.|. | +-|---|-.++. +-.|+.|+..|.
T Consensus 12 deed~cplcie~mditdknf~pc~cg----y--~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCG----Y--QICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cccccCcccccccccccCCcccCCcc----c--HHHHHHHHHHHhhccCCChHhhhhcc
Confidence 44566999998865445557799994 1 456666876664 579999999886
No 54
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.38 E-value=3.9 Score=43.37 Aligned_cols=58 Identities=21% Similarity=0.594 Sum_probs=41.5
Q ss_pred CCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHc---CCccccccCceeec---cceehhccC
Q 018951 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK---GNKNCEVCGKEVQN---LPVTLLRMS 263 (348)
Q Consensus 199 e~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k---~~~~CElCk~~y~~---~pv~llr~~ 263 (348)
+..|-||++... -+..+-|. +.+=-.||.+.+... +-..|++|...+.. .|+....++
T Consensus 186 ~~~CPICL~~~~--~p~~t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~q 249 (513)
T KOG2164|consen 186 DMQCPICLEPPS--VPVRTNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQ 249 (513)
T ss_pred CCcCCcccCCCC--cccccccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeecccc
Confidence 889999998643 24455576 577789999988654 45799999998765 466554443
No 55
>PLN02436 cellulose synthase A
Probab=80.31 E-value=1.2 Score=50.71 Aligned_cols=51 Identities=25% Similarity=0.628 Sum_probs=35.7
Q ss_pred CCCeeEEeccCC---CCCCeeeccCc-ccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018951 198 EEAVCRICLDIC---EEGNTLKMECS-CKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 198 ee~~CRICl~~~---eeg~~Li~PC~-CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
...+|+||-++- .+|+.++ -|+ |. --|=+.|. ..-...|+..|+.||++|+
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FV-ACn~C~---fpvCr~Cy-eyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFV-ACNECA---FPVCRPCY-EYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEE-eeccCC---Cccccchh-hhhhhcCCccCcccCCchh
Confidence 346999998762 4566664 444 31 23566898 4455568899999999999
No 56
>PLN02189 cellulose synthase
Probab=79.64 E-value=1.4 Score=50.25 Aligned_cols=51 Identities=27% Similarity=0.659 Sum_probs=35.7
Q ss_pred CCCeeEEeccCC---CCCCeeeccCc-ccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018951 198 EEAVCRICLDIC---EEGNTLKMECS-CKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 198 ee~~CRICl~~~---eeg~~Li~PC~-CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
...+|+||-++- .+|+.++ .|. |. --|=+.|. +.-...|+..|+.||++|+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fv-aC~~C~---fpvCr~Cy-eyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFV-ACNECG---FPVCRPCY-EYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEE-eeccCC---Cccccchh-hhhhhcCCccCcccCCchh
Confidence 346899998762 3556554 555 42 24666898 4445568999999999998
No 57
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=79.32 E-value=2.6 Score=38.60 Aligned_cols=54 Identities=28% Similarity=0.674 Sum_probs=37.2
Q ss_pred CCCeeEEeccCCCCCCeeeccCc----------ccCcccccCHHHHHHHHHHcC--------------------------
Q 018951 198 EEAVCRICLDICEEGNTLKMECS----------CKGALRLVHEECAIRWFSTKG-------------------------- 241 (348)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~PC~----------CkGslk~VH~~CL~kWl~~k~-------------------------- 241 (348)
|+..|-||++--- |...+-|. |.. .|-|.+||++.-+..+
T Consensus 1 ed~~CpICme~PH--NAVLLlCSS~~kgcRpymc~T--s~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (162)
T PF07800_consen 1 EDVTCPICMEHPH--NAVLLLCSSHEKGCRPYMCDT--SYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQ 76 (162)
T ss_pred CCccCceeccCCC--ceEEEEeccccCCccccccCC--ccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccc
Confidence 4678999997532 33333332 654 5899999999876431
Q ss_pred ---CccccccCceeecc
Q 018951 242 ---NKNCEVCGKEVQNL 255 (348)
Q Consensus 242 ---~~~CElCk~~y~~~ 255 (348)
...|++|+-++...
T Consensus 77 ~~~~L~CPLCRG~V~GW 93 (162)
T PF07800_consen 77 EQPELACPLCRGEVKGW 93 (162)
T ss_pred ccccccCccccCceece
Confidence 35899999987755
No 58
>PLN02400 cellulose synthase
Probab=79.05 E-value=1.3 Score=50.72 Aligned_cols=51 Identities=25% Similarity=0.526 Sum_probs=34.6
Q ss_pred CCCeeEEeccCC---CCCCeee--ccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018951 198 EEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 198 ee~~CRICl~~~---eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
...+|+||-++- .+|+.++ +.|. --|=+.|.+- =+..|+..|+.||++|+-
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCa-----FPVCRpCYEY-ERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECA-----FPVCRPCYEY-ERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCC-----Cccccchhhe-ecccCCccCcccCCcccc
Confidence 356999998762 4567765 4562 1244588743 234478999999999993
No 59
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.94 E-value=1.4 Score=44.60 Aligned_cols=54 Identities=20% Similarity=0.548 Sum_probs=38.5
Q ss_pred CCCCeeEEeccCCCCCC----ee-ecc-CcccCcccccCHHHHHHHHHHcC-----CccccccCceeecc
Q 018951 197 EEEAVCRICLDICEEGN----TL-KME-CSCKGALRLVHEECAIRWFSTKG-----NKNCEVCGKEVQNL 255 (348)
Q Consensus 197 eee~~CRICl~~~eeg~----~L-i~P-C~CkGslk~VH~~CL~kWl~~k~-----~~~CElCk~~y~~~ 255 (348)
..+.+|-||++...+-. .+ |+| |+ +.+=..|+.+|-..+. .+.|++|+..-.++
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 55789999998643211 11 334 76 4666789999996655 68999999987765
No 60
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.12 E-value=1.9 Score=42.40 Aligned_cols=49 Identities=22% Similarity=0.490 Sum_probs=38.5
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHH-HHHHcCCccccccCceee
Q 018951 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIR-WFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~k-Wl~~k~~~~CElCk~~y~ 253 (348)
+....|-||++.. ..+...||. +.+--.||.. |-..+ ...|++|+....
T Consensus 213 ~~d~kC~lC~e~~--~~ps~t~Cg-----HlFC~~Cl~~~~t~~k-~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEP--EVPSCTPCG-----HLFCLSCLLISWTKKK-YEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeeccc--CCccccccc-----chhhHHHHHHHHHhhc-cccCchhhhhcc
Confidence 4467799999763 357888997 5888899999 88765 357999998765
No 61
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.05 E-value=1.3 Score=46.68 Aligned_cols=53 Identities=25% Similarity=0.607 Sum_probs=41.4
Q ss_pred CCCCCccccCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018951 188 MENNDEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 188 ~e~~~ed~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
.++..++..+....|+||+.+- ..-+.+|. |..|+.+|...+. .|++|+....
T Consensus 468 s~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~--------~~~~l~~~~~~~~--~~pl~~~~~~ 520 (543)
T KOG0802|consen 468 SEATPSQLREPNDVCAICYQEM---SARITPCS--------HALCLRKWLYVQE--VCPLCHTYMK 520 (543)
T ss_pred CCCChhhhhcccCcchHHHHHH---Hhcccccc--------chhHHHhhhhhcc--ccCCCchhhh
Confidence 4567778888999999999764 22345555 9999999999865 8999987765
No 62
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.72 E-value=1.5 Score=40.74 Aligned_cols=27 Identities=33% Similarity=0.957 Sum_probs=21.4
Q ss_pred ccCCCCeeEEeccCCCCCCee-eccCcc
Q 018951 195 IAEEEAVCRICLDICEEGNTL-KMECSC 221 (348)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~L-i~PC~C 221 (348)
-.+..-+|-||+++.+.|+.+ .+||.|
T Consensus 173 L~ddkGECvICLEdL~~GdtIARLPCLC 200 (205)
T KOG0801|consen 173 LKDDKGECVICLEDLEAGDTIARLPCLC 200 (205)
T ss_pred hcccCCcEEEEhhhccCCCceeccceEE
Confidence 345567799999988877765 699999
No 63
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.25 E-value=2.6 Score=40.95 Aligned_cols=51 Identities=24% Similarity=0.573 Sum_probs=42.1
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHc------CCccccccCcee
Q 018951 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK------GNKNCEVCGKEV 252 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k------~~~~CElCk~~y 252 (348)
+...-|+.|-....+|+...+-|- +.+|-+||..|-..- ....|+-|.+++
T Consensus 48 DY~pNC~LC~t~La~gdt~RLvCy-----hlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLVCY-----HLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCCCceeCCccccCcceeehhh-----hhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 456779999887778888888886 699999999998763 137999999985
No 64
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=75.13 E-value=1.1 Score=35.97 Aligned_cols=34 Identities=24% Similarity=0.514 Sum_probs=24.3
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHH
Q 018951 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIR 235 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~k 235 (348)
+++..|.+|...-..+.-.+.||. +.+|..|+.+
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCC-----eEEecccccC
Confidence 346679999876544344568886 5899999753
No 65
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=74.45 E-value=1.1 Score=32.18 Aligned_cols=22 Identities=27% Similarity=0.890 Sum_probs=16.2
Q ss_pred ccCHHHHHHHHHHcCCcccccc
Q 018951 227 LVHEECAIRWFSTKGNKNCEVC 248 (348)
Q Consensus 227 ~VH~~CL~kWl~~k~~~~CElC 248 (348)
-+|..|+.++++...+..|+.|
T Consensus 22 r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 22 RLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp EE-HHHHHHHTTT-SS-B-TTT
T ss_pred hHHHHHHHHHHhcCCCCCCcCC
Confidence 5999999999999877789987
No 66
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=71.46 E-value=1.7 Score=43.63 Aligned_cols=49 Identities=22% Similarity=0.390 Sum_probs=38.3
Q ss_pred CCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeecc
Q 018951 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (348)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~ 255 (348)
....|+||.+-.. -+++.+|. +-+-.-|+.+.+.... .|++|+.++...
T Consensus 24 s~lrC~IC~~~i~--ip~~TtCg-----HtFCslCIR~hL~~qp--~CP~Cr~~~~es 72 (391)
T COG5432 24 SMLRCRICDCRIS--IPCETTCG-----HTFCSLCIRRHLGTQP--FCPVCREDPCES 72 (391)
T ss_pred hHHHhhhhhheee--cceecccc-----cchhHHHHHHHhcCCC--CCccccccHHhh
Confidence 3567999976432 47788887 4677889999988755 999999998765
No 67
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=71.21 E-value=1.4 Score=42.84 Aligned_cols=52 Identities=25% Similarity=0.407 Sum_probs=33.3
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcc-cccCHHHHHHHHHHcCCccccccCcee
Q 018951 197 EEEAVCRICLDICEEGNTLKMECSCKGAL-RLVHEECAIRWFSTKGNKNCEVCGKEV 252 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGsl-k~VH~~CL~kWl~~k~~~~CElCk~~y 252 (348)
++...| ||. ......++ .|.|.+-- .|||..|+--=..-+|+++|+-|+..-
T Consensus 217 ~e~~yC-~Cn--qvsyg~Mi-~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 217 DEPTYC-ICN--QVSYGKMI-GCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred CCCEEE-Eec--cccccccc-ccCCCCCCcceEEEeccccccCCCCcccchhhhhhh
Confidence 344444 455 22333455 58887665 899999964333346889999998764
No 68
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=69.79 E-value=3.2 Score=47.37 Aligned_cols=51 Identities=25% Similarity=0.606 Sum_probs=35.6
Q ss_pred CCCeeEEeccCC---CCCCeee--ccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018951 198 EEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 198 ee~~CRICl~~~---eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
...+|.||-+.- .+|++++ ..|. --|-+.|.+ .=...|+..|+.||++|+-
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~-----fpvCr~cye-ye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCG-----FPVCKPCYE-YERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCC-----Cccccchhh-hhhhcCCccCCccCCchhh
Confidence 567899998652 3567775 4562 234458984 3344578999999999993
No 69
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=68.63 E-value=4.3 Score=45.55 Aligned_cols=60 Identities=22% Similarity=0.566 Sum_probs=43.4
Q ss_pred ccCCCCeeEEeccCCCCC-CeeeccCcccCcccccCHHHHHHHHHHc-----CCccccccCceeecccee
Q 018951 195 IAEEEAVCRICLDICEEG-NTLKMECSCKGALRLVHEECAIRWFSTK-----GNKNCEVCGKEVQNLPVT 258 (348)
Q Consensus 195 ~~eee~~CRICl~~~eeg-~~Li~PC~CkGslk~VH~~CL~kWl~~k-----~~~~CElCk~~y~~~pv~ 258 (348)
......+|-||++.-... ..+ +|+--.+.+|..|+.+|-+.. ..+.|+-|.+.++.+|.+
T Consensus 187 l~~~~yeCmIC~e~I~~t~~~W----SC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~~~~ 252 (950)
T KOG1952|consen 187 LSNRKYECMICTERIKRTAPVW----SCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTVPKT 252 (950)
T ss_pred HhcCceEEEEeeeeccccCCce----ecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccCCcc
Confidence 345568999999764322 223 233445799999999998764 258999999999888764
No 70
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=68.56 E-value=8 Score=39.78 Aligned_cols=58 Identities=22% Similarity=0.520 Sum_probs=37.5
Q ss_pred ccccCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeeccce
Q 018951 193 EEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPV 257 (348)
Q Consensus 193 ed~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~pv 257 (348)
+|.+|++..|-||-+..+- .-+.||.. -+-..|..+-..--.++.|.+|+++...+-.
T Consensus 55 ddtDEen~~C~ICA~~~TY--s~~~PC~H-----~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~f 112 (493)
T COG5236 55 DDTDEENMNCQICAGSTTY--SARYPCGH-----QICHACAVRLRALYMQKGCPLCRTETEAVVF 112 (493)
T ss_pred cccccccceeEEecCCceE--EEeccCCc-----hHHHHHHHHHHHHHhccCCCccccccceEEE
Confidence 3445678899999754321 24789984 2334566655444456799999999776533
No 71
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=68.44 E-value=10 Score=30.92 Aligned_cols=42 Identities=17% Similarity=0.448 Sum_probs=27.3
Q ss_pred ehhhHHHHHHHHHHHHhhcchhhccccccc--------chhHhHHH-HHHHH
Q 018951 293 LVLISTICYFFFLEQILVLPFRYERKLRKD--------NLMIPICY-NLSFL 335 (348)
Q Consensus 293 LVLiS~layf~fleqLLv~~f~~~~~~~~~--------alaiPf~~-~lGll 335 (348)
++.+++++|..+-.+++++|| .|+|+-.+ |+.+|..+ ++|+.
T Consensus 10 ~l~~a~~vF~YYt~WvlllPF-vd~d~~i~~~F~Pr~yAi~lP~~lll~~~~ 60 (78)
T PF07297_consen 10 MLAVALSVFTYYTIWVLLLPF-VDEDHPIHSFFPPREYAIILPIFLLLLGLS 60 (78)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-cCCCchHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 355677777777778888999 45666443 56667654 55554
No 72
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=63.83 E-value=2.5 Score=43.12 Aligned_cols=47 Identities=23% Similarity=0.511 Sum_probs=37.7
Q ss_pred CCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018951 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 199 e~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
--.|-||++-. .-+++.||. +.+-.-|+.+.++.+. .|+.|..+++.
T Consensus 23 lLRC~IC~eyf--~ip~itpCs-----HtfCSlCIR~~L~~~p--~CP~C~~~~~E 69 (442)
T KOG0287|consen 23 LLRCGICFEYF--NIPMITPCS-----HTFCSLCIRKFLSYKP--QCPTCCVTVTE 69 (442)
T ss_pred HHHHhHHHHHh--cCceecccc-----chHHHHHHHHHhccCC--CCCceecccch
Confidence 46799999743 358999988 4677889999998865 99999988763
No 73
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=63.38 E-value=6.6 Score=46.95 Aligned_cols=56 Identities=20% Similarity=0.675 Sum_probs=39.4
Q ss_pred ccCCCCeeEEeccCCCCCC-eeeccCcccCcccccCHHHHHHHHHHc--------CCccccccCceeecc
Q 018951 195 IAEEEAVCRICLDICEEGN-TLKMECSCKGALRLVHEECAIRWFSTK--------GNKNCEVCGKEVQNL 255 (348)
Q Consensus 195 ~~eee~~CRICl~~~eeg~-~Li~PC~CkGslk~VH~~CL~kWl~~k--------~~~~CElCk~~y~~~ 255 (348)
..+.+++|-||+.+.-... .+.+-|. +.+|..|..+-+..+ +-..|++|+.++..+
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~-----HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCS-----HIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCc-----cchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 3456789999997643322 3445665 699999997755543 347999999998754
No 74
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=62.06 E-value=6.7 Score=40.00 Aligned_cols=35 Identities=26% Similarity=0.728 Sum_probs=26.8
Q ss_pred cCcccCcccccCHHHHHHHHHHcC-----------CccccccCceeecc
Q 018951 218 ECSCKGALRLVHEECAIRWFSTKG-----------NKNCEVCGKEVQNL 255 (348)
Q Consensus 218 PC~CkGslk~VH~~CL~kWl~~k~-----------~~~CElCk~~y~~~ 255 (348)
+|.|+- .-=.+|+-|||..++ +..|+.|+..|-.+
T Consensus 308 ~C~CRP---mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil 353 (358)
T PF10272_consen 308 QCYCRP---MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL 353 (358)
T ss_pred cccccc---hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence 577763 345699999998764 57999999998754
No 75
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=61.13 E-value=3.6 Score=44.21 Aligned_cols=52 Identities=21% Similarity=0.513 Sum_probs=39.4
Q ss_pred ccCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHH---cCCccccccCceee
Q 018951 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST---KGNKNCEVCGKEVQ 253 (348)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~---k~~~~CElCk~~y~ 253 (348)
+..++.+|-+|++..+ +.+..-|. +.+-+.|+..++.. ..+.+|+.|.-.+.
T Consensus 532 enk~~~~C~lc~d~ae--d~i~s~Ch-----H~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAE--DYIESSCH-----HKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cccCceeecccCChhh--hhHhhhhh-----HHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 3456788999998743 46777887 46778999998754 45799999987654
No 76
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=59.05 E-value=11 Score=28.28 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=17.3
Q ss_pred hhH-hHHHHHHHHHHHHHHHHhhc
Q 018951 324 LMI-PICYNLSFLILILLYAIKTH 346 (348)
Q Consensus 324 lai-Pf~~~lGlli~~~~~~~~~~ 346 (348)
+++ |++|++|+|.+.+.-..|.|
T Consensus 4 ~~iV~i~iv~~lLg~~I~~~~K~y 27 (50)
T PF12606_consen 4 FLIVSIFIVMGLLGLSICTTLKAY 27 (50)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344 99999999977776666665
No 77
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=58.74 E-value=2.9 Score=43.41 Aligned_cols=50 Identities=26% Similarity=0.633 Sum_probs=39.4
Q ss_pred cCCCCeeEEeccCC-CCCCee-eccCcccCcccccCHHHHHHHHHHcCCccccccCc
Q 018951 196 AEEEAVCRICLDIC-EEGNTL-KMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGK 250 (348)
Q Consensus 196 ~eee~~CRICl~~~-eeg~~L-i~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~ 250 (348)
.+.+-.|-.|-+.. ...+.| -+||. +.+|..||...+..++...||-|+.
T Consensus 362 ~e~~L~Cg~CGe~~Glk~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 362 EETELYCGLCGESIGLKNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHHhhhhhhhhhhhcCCcccccccchh-----HHHHHHHHHHHHHhCCCCCCccHHH
Confidence 45678899997653 222334 58998 5999999999999999999999993
No 78
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.29 E-value=5.5 Score=30.93 Aligned_cols=48 Identities=17% Similarity=0.481 Sum_probs=27.8
Q ss_pred CeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018951 200 AVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 200 ~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
++|-||++..- +..+.-|... ..-.+|-.+-.+- ..-.|++|+.+++-
T Consensus 8 dECTICye~pv--dsVlYtCGHM----CmCy~Cg~rl~~~-~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPV--DSVLYTCGHM----CMCYACGLRLKKA-LHGCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcc--hHHHHHcchH----HhHHHHHHHHHHc-cCCcCcchhhHHHH
Confidence 67999997642 2233334321 1223675543332 34599999998764
No 79
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=51.30 E-value=6.6 Score=43.41 Aligned_cols=59 Identities=24% Similarity=0.401 Sum_probs=39.5
Q ss_pred CCCCeeEEeccCCCCCCe---eeccCcccCcccccCHHHHHHHH---HHc-----CCccccccCceeecc
Q 018951 197 EEEAVCRICLDICEEGNT---LKMECSCKGALRLVHEECAIRWF---STK-----GNKNCEVCGKEVQNL 255 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~---Li~PC~CkGslk~VH~~CL~kWl---~~k-----~~~~CElCk~~y~~~ 255 (348)
...+.|.||.+++.+.+. --+-|+=-|--+.||..|+.+-= .+. +-++|--|+|.|..+
T Consensus 115 RfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKl 184 (900)
T KOG0956|consen 115 RFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKL 184 (900)
T ss_pred hhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHHh
Confidence 456899999887543222 23556655555799999987531 111 248999999998755
No 80
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.28 E-value=13 Score=35.06 Aligned_cols=57 Identities=19% Similarity=0.478 Sum_probs=33.1
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHc----C-----CccccccCceee
Q 018951 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK----G-----NKNCEVCGKEVQ 253 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k----~-----~~~CElCk~~y~ 253 (348)
++...|-||+.-.-+|..--.-|.-.---+-+|+-||-.|++.- + --.|+-|..++.
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 45667889984322221111223211112689999999999642 1 147988887654
No 81
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=47.70 E-value=21 Score=26.96 Aligned_cols=23 Identities=26% Similarity=0.613 Sum_probs=18.2
Q ss_pred chhHhHHHHHHHH-HHHHHHHHhh
Q 018951 323 NLMIPICYNLSFL-ILILLYAIKT 345 (348)
Q Consensus 323 alaiPf~~~lGll-i~~~~~~~~~ 345 (348)
.++||.++++|++ +.+...|+|+
T Consensus 5 ~~LIpiSl~l~~~~l~~f~Wavk~ 28 (51)
T TIGR00847 5 TILIPISLLLGGVGLVAFLWSLKS 28 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4566999999999 7777778774
No 82
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.43 E-value=12 Score=38.65 Aligned_cols=49 Identities=24% Similarity=0.482 Sum_probs=35.6
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018951 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
.|+..|-||+.. +-+.++.||+.+ --..|+.+-+.. ++.|=.||+....
T Consensus 420 sEd~lCpICyA~--pi~Avf~PC~H~-----SC~~CI~qHlmN--~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAG--PINAVFAPCSHR-----SCYGCITQHLMN--CKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecc--cchhhccCCCCc-----hHHHHHHHHHhc--CCeeeEecceeee
Confidence 567889999975 335789999843 234677776654 5699999999874
No 83
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.15 E-value=14 Score=37.14 Aligned_cols=46 Identities=24% Similarity=0.538 Sum_probs=27.4
Q ss_pred CCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHH--HHHcCCccccccCceee
Q 018951 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRW--FSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kW--l~~k~~~~CElCk~~y~ 253 (348)
..++|-||+.... -+..++|. |+-|..-= -...+...|.+|+.++.
T Consensus 6 ~~~eC~IC~nt~n--~Pv~l~C~--------HkFCyiCiKGsy~ndk~~CavCR~pid 53 (324)
T KOG0824|consen 6 KKKECLICYNTGN--CPVNLYCF--------HKFCYICIKGSYKNDKKTCAVCRFPID 53 (324)
T ss_pred cCCcceeeeccCC--cCcccccc--------chhhhhhhcchhhcCCCCCceecCCCC
Confidence 3567999987532 24556665 55553210 01123568999999965
No 84
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=45.23 E-value=9.2 Score=38.70 Aligned_cols=51 Identities=20% Similarity=0.503 Sum_probs=38.1
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeecc
Q 018951 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~ 255 (348)
....+|++|-. +--+-..|..|-| -+=+.||.+.|.. +.+|+.|+-.....
T Consensus 13 n~~itC~LC~G-YliDATTI~eCLH-----TFCkSCivk~l~~--~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 13 NPHITCRLCGG-YLIDATTITECLH-----TFCKSCIVKYLEE--SKYCPTCDIVIHKT 63 (331)
T ss_pred ccceehhhccc-eeecchhHHHHHH-----HHHHHHHHHHHHH--hccCCccceeccCc
Confidence 44678999953 3233456778875 6778999999988 67999999886654
No 85
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=44.32 E-value=14 Score=33.22 Aligned_cols=56 Identities=20% Similarity=0.350 Sum_probs=38.4
Q ss_pred CCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeecc
Q 018951 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (348)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~ 255 (348)
.--+|-||.+...+ +.+..|=.|-|. +.---=|+.-|--..-.-.||+||+-|+..
T Consensus 79 ~lYeCnIC~etS~e-e~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAE-ERFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccch-hhcCCcccccch-HHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 34679999986543 567778666662 222334567787666678999999999853
No 86
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=43.65 E-value=8.3 Score=44.32 Aligned_cols=58 Identities=34% Similarity=0.535 Sum_probs=36.7
Q ss_pred cccCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018951 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 194 d~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
..-+++.+|-||++.+-+....+.-| .|--.+||++|.-.=+...|.+.|--|-+.-+
T Consensus 214 ~~~~~D~~C~iC~~~~~~n~n~ivfC--D~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~ 271 (1051)
T KOG0955|consen 214 ALLEEDAVCCICLDGECQNSNVIVFC--DGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQ 271 (1051)
T ss_pred cccCCCccceeecccccCCCceEEEc--CCCcchhhhhccCCCCCCCCcEeehhhccCcC
Confidence 34467899999998754322334444 33347999999872223346678877776543
No 87
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=43.24 E-value=7.9 Score=38.98 Aligned_cols=14 Identities=29% Similarity=0.859 Sum_probs=0.0
Q ss_pred ehhhHHHHHHHHHH
Q 018951 293 LVLISTICYFFFLE 306 (348)
Q Consensus 293 LVLiS~layf~fle 306 (348)
|.+++.++|||++.
T Consensus 31 lll~ail~w~~iim 44 (381)
T PF05297_consen 31 LLLVAILVWFFIIM 44 (381)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 36677777777744
No 88
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=42.39 E-value=13 Score=41.11 Aligned_cols=55 Identities=29% Similarity=0.564 Sum_probs=36.8
Q ss_pred CeeEEeccCC-CCCCeeeccCcccCcccccCHHHH-------HHHHHHc-------CCccccccCceeecc
Q 018951 200 AVCRICLDIC-EEGNTLKMECSCKGALRLVHEECA-------IRWFSTK-------GNKNCEVCGKEVQNL 255 (348)
Q Consensus 200 ~~CRICl~~~-eeg~~Li~PC~CkGslk~VH~~CL-------~kWl~~k-------~~~~CElCk~~y~~~ 255 (348)
--|..|-|+. ..+|+|+. |.=-+---.||+.|- --||=.| -..+||+|-+++--+
T Consensus 6 GGCCVCSDErGWaeNPLVY-CDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGAL 75 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVY-CDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGAL 75 (900)
T ss_pred cceeeecCcCCCccCceee-ecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccce
Confidence 3499998763 45688873 322222247999997 4688443 147999999987644
No 89
>PF01440 Gemini_AL2: Geminivirus AL2 protein; InterPro: IPR000942 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=42.08 E-value=3.7 Score=36.61 Aligned_cols=34 Identities=21% Similarity=0.683 Sum_probs=28.1
Q ss_pred eeeccCcccCcccccCHHHHHHHHHHcCCccccccCc
Q 018951 214 TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGK 250 (348)
Q Consensus 214 ~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~ 250 (348)
.+-++|.|. .|+|.+|-..+|.++|...|--...
T Consensus 32 RIDL~CGCS---yyihinC~~hGFTHRGthhCsS~~E 65 (134)
T PF01440_consen 32 RIDLPCGCS---YYIHINCHNHGFTHRGTHHCSSSRE 65 (134)
T ss_pred ccccCCCCE---EEeecccCCCCcCCCcCccCCCcCc
Confidence 456899996 7999999999999999888864443
No 90
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=40.31 E-value=13 Score=40.70 Aligned_cols=33 Identities=33% Similarity=0.754 Sum_probs=25.9
Q ss_pred eeccCcccCcccccCHHHHHHHHHHc---C------CccccccC
Q 018951 215 LKMECSCKGALRLVHEECAIRWFSTK---G------NKNCEVCG 249 (348)
Q Consensus 215 Li~PC~CkGslk~VH~~CL~kWl~~k---~------~~~CElCk 249 (348)
...-|.|.| ++.|..|+.-|+.+. + -..||.|+
T Consensus 34 ~m~ac~~c~--~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~ 75 (694)
T KOG4443|consen 34 RLLACSDCG--QKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACG 75 (694)
T ss_pred cchhhhhhc--ccCCcchhhHHHhHHHhcCCcccCCceeeeecc
Confidence 345688887 699999999999875 1 36788887
No 91
>PF15013 CCSMST1: CCSMST1 family
Probab=39.47 E-value=14 Score=30.05 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=14.3
Q ss_pred ceeecceee-hhhHHHHHHHH
Q 018951 285 SAWQDFVVL-VLISTICYFFF 304 (348)
Q Consensus 285 ~~W~~~~VL-VLiS~layf~f 304 (348)
.-||..++. .+++.+.||||
T Consensus 29 PWyq~~~is~sl~~fliyFC~ 49 (77)
T PF15013_consen 29 PWYQVYPISLSLAAFLIYFCF 49 (77)
T ss_pred cceeeehhHHHHHHHHHHHhh
Confidence 445665544 57788999999
No 92
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=39.43 E-value=14 Score=36.57 Aligned_cols=55 Identities=20% Similarity=0.349 Sum_probs=39.8
Q ss_pred CCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHc--C-----CccccccCceee
Q 018951 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK--G-----NKNCEVCGKEVQ 253 (348)
Q Consensus 199 e~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k--~-----~~~CElCk~~y~ 253 (348)
...|.+|.++.++.+..+.-|.-++-....|-.||..-+..- + ...|+.|++.+.
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 368999998765555666677766666799999999844321 2 369999999654
No 93
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=38.67 E-value=58 Score=26.53 Aligned_cols=39 Identities=26% Similarity=0.443 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHHHhhcchhhcccc--------cccchhHhHHHHHH
Q 018951 294 VLISTICYFFFLEQILVLPFRYERKL--------RKDNLMIPICYNLS 333 (348)
Q Consensus 294 VLiS~layf~fleqLLv~~f~~~~~~--------~~~alaiPf~~~lG 333 (348)
|-+|..+|..+-.+++.+||-- +++ ...||+||++..|-
T Consensus 13 v~iSl~iFtYYT~WViilPFvD-s~hiihKyFLpr~yAi~iPvaagl~ 59 (81)
T KOG3488|consen 13 VYISLAIFTYYTIWVIILPFVD-SMHIIHKYFLPREYAITIPVAAGLF 59 (81)
T ss_pred HHHHHHHHHHHHHHHhhhcccc-hhHHHHHHhcChhHHhhhHHHHHHH
Confidence 5567777766667777788752 222 22377777765333
No 94
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.82 E-value=20 Score=36.23 Aligned_cols=35 Identities=26% Similarity=0.614 Sum_probs=26.5
Q ss_pred CcccCcccccCHHHHHHHHHHc-----------CCccccccCceeeccc
Q 018951 219 CSCKGALRLVHEECAIRWFSTK-----------GNKNCEVCGKEVQNLP 256 (348)
Q Consensus 219 C~CkGslk~VH~~CL~kWl~~k-----------~~~~CElCk~~y~~~p 256 (348)
|-|+- .--++||.+||.-+ |+.+|+.|+..|-..-
T Consensus 323 c~crp---~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 323 CICRP---LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred ccccc---HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 55653 55679999999654 4679999999987653
No 95
>PF04641 Rtf2: Rtf2 RING-finger
Probab=35.42 E-value=34 Score=32.84 Aligned_cols=53 Identities=21% Similarity=0.430 Sum_probs=36.1
Q ss_pred ccCCCCeeEEeccCCCCCCe--eeccCcccCcccccCHHHHHHHHHHcCCccccccCceeecc
Q 018951 195 IAEEEAVCRICLDICEEGNT--LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (348)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~--Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~ 255 (348)
..+..-+|-|+..+....-. .+.||.| .+-+.+|.+- . ....|++|+.+|...
T Consensus 109 ~~~~~~~CPvt~~~~~~~~~fv~l~~cG~-----V~s~~alke~-k--~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 109 NSEGRFICPVTGKEFNGKHKFVYLRPCGC-----VFSEKALKEL-K--KSKKCPVCGKPFTEE 163 (260)
T ss_pred cCCceeECCCCCcccCCceeEEEEcCCCC-----EeeHHHHHhh-c--ccccccccCCccccC
Confidence 34555667777655433223 3679998 7888888775 2 346899999999854
No 96
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=35.07 E-value=47 Score=24.34 Aligned_cols=22 Identities=27% Similarity=0.726 Sum_probs=16.7
Q ss_pred hhHhHHHHHHHH-HHHHHHHHhh
Q 018951 324 LMIPICYNLSFL-ILILLYAIKT 345 (348)
Q Consensus 324 laiPf~~~lGll-i~~~~~~~~~ 345 (348)
++||.++++|++ +.+...|+|+
T Consensus 5 ~lip~sl~l~~~~l~~f~Wavk~ 27 (45)
T PF03597_consen 5 ILIPVSLILGLIALAAFLWAVKS 27 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 456999998888 7777777764
No 97
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.18 E-value=27 Score=32.88 Aligned_cols=41 Identities=24% Similarity=0.549 Sum_probs=24.5
Q ss_pred CCeeEEeccCCCCCCeeeccCcccCcccccC-HHHHHHHHHHcCCccccccCcee
Q 018951 199 EAVCRICLDICEEGNTLKMECSCKGALRLVH-EECAIRWFSTKGNKNCEVCGKEV 252 (348)
Q Consensus 199 e~~CRICl~~~eeg~~Li~PC~CkGslk~VH-~~CL~kWl~~k~~~~CElCk~~y 252 (348)
...||.|.+. +..-+.+||+. +.| ..|- .+..+||+|+...
T Consensus 158 ~~~Cr~C~~~--~~~VlllPCrH-----l~lC~~C~------~~~~~CPiC~~~~ 199 (207)
T KOG1100|consen 158 MRSCRKCGER--EATVLLLPCRH-----LCLCGICD------ESLRICPICRSPK 199 (207)
T ss_pred cccceecCcC--CceEEeecccc-----eEeccccc------ccCccCCCCcChh
Confidence 3449999754 23478899873 221 2331 1145799998764
No 98
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=33.24 E-value=20 Score=37.96 Aligned_cols=60 Identities=18% Similarity=0.414 Sum_probs=41.6
Q ss_pred cccCCCCeeEEeccCC-CCCCeeeccCcccCcccccCHHHHHHHHHHc------CCccccccCceeeccc
Q 018951 194 EIAEEEAVCRICLDIC-EEGNTLKMECSCKGALRLVHEECAIRWFSTK------GNKNCEVCGKEVQNLP 256 (348)
Q Consensus 194 d~~eee~~CRICl~~~-eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k------~~~~CElCk~~y~~~p 256 (348)
........|-.|++.. -.+|.++.=|+|+ .++|+.|-+--+... ..+.|.+|...-..++
T Consensus 163 ~~~~~n~qc~vC~~g~~~~~NrmlqC~~C~---~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~ 229 (464)
T KOG4323|consen 163 SGHKVNLQCSVCYCGGPGAGNRMLQCDKCR---QWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVP 229 (464)
T ss_pred ccccccceeeeeecCCcCccceeeeecccc---cHHHHHhccCCCCHhhccCccceEeehhhccchhhcc
Confidence 3334445599999654 3457777667786 599999965544322 3589999998877664
No 99
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=33.06 E-value=16 Score=41.28 Aligned_cols=51 Identities=25% Similarity=0.410 Sum_probs=34.1
Q ss_pred cccCCCCeeEEeccCCCCCCeee--ccCcccCcccccCHHHHHHHHHHc--CCccccccC
Q 018951 194 EIAEEEAVCRICLDICEEGNTLK--MECSCKGALRLVHEECAIRWFSTK--GNKNCEVCG 249 (348)
Q Consensus 194 d~~eee~~CRICl~~~eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~k--~~~~CElCk 249 (348)
+..++.--|-||...+-+ +.|+ .-|+ ..|+|.+||+-=+.+. +.++|+-|-
T Consensus 210 ~~~~E~~~C~IC~~~DpE-dVLLLCDsCN----~~~YH~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 210 GLSQEEVKCDICTVHDPE-DVLLLCDSCN----KVYYHVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred CcccccccceeeccCChH-Hhheeecccc----cceeeccccCcccccccccceecCcch
Confidence 344566789999865433 3333 3444 3589999998866443 568999995
No 100
>PRK05978 hypothetical protein; Provisional
Probab=32.33 E-value=1.1e+02 Score=27.59 Aligned_cols=19 Identities=16% Similarity=0.670 Sum_probs=14.3
Q ss_pred HHHHHcCCccccccCceeecc
Q 018951 235 RWFSTKGNKNCEVCGKEVQNL 255 (348)
Q Consensus 235 kWl~~k~~~~CElCk~~y~~~ 255 (348)
.+++.. .+|+.|+.+|...
T Consensus 47 g~Lkv~--~~C~~CG~~~~~~ 65 (148)
T PRK05978 47 AFLKPV--DHCAACGEDFTHH 65 (148)
T ss_pred cccccC--CCccccCCccccC
Confidence 555554 5999999999854
No 101
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=29.52 E-value=56 Score=25.44 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=16.5
Q ss_pred cchhHhHHHHHHHH-HHHHHHHHhh
Q 018951 322 DNLMIPICYNLSFL-ILILLYAIKT 345 (348)
Q Consensus 322 ~alaiPf~~~lGll-i~~~~~~~~~ 345 (348)
-.++||+++++|.+ +.+...+.|+
T Consensus 4 l~~Lipvsi~l~~v~l~~flWavks 28 (58)
T COG3197 4 LYILIPVSILLGAVGLGAFLWAVKS 28 (58)
T ss_pred eeeHHHHHHHHHHHHHHHHHHhccc
Confidence 34667999999988 5555555553
No 103
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.86 E-value=48 Score=34.41 Aligned_cols=51 Identities=24% Similarity=0.486 Sum_probs=36.6
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeeccc
Q 018951 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP 256 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~p 256 (348)
-.+-.|-||+.... ++..+||.- -+=..||++=+. .+..|++|+.++.-.+
T Consensus 82 ~sef~c~vc~~~l~--~pv~tpcgh-----s~c~~Cl~r~ld--~~~~cp~Cr~~l~e~~ 132 (398)
T KOG4159|consen 82 RSEFECCVCSRALY--PPVVTPCGH-----SFCLECLDRSLD--QETECPLCRDELVELP 132 (398)
T ss_pred cchhhhhhhHhhcC--CCccccccc-----cccHHHHHHHhc--cCCCCcccccccccch
Confidence 56778999986543 577889985 344458777333 4679999999998644
No 104
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.68 E-value=8.9 Score=38.58 Aligned_cols=43 Identities=23% Similarity=0.621 Sum_probs=26.6
Q ss_pred CCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018951 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 199 e~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
...|+||++.. -+=+.++|...- .-.+| -+.-..|+||++.+.
T Consensus 300 ~~LC~ICmDaP--~DCvfLeCGHmV----tCt~C------Gkrm~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAP--RDCVFLECGHMV----TCTKC------GKRMNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCC--cceEEeecCcEE----eehhh------ccccccCchHHHHHH
Confidence 68899999863 345788997532 11233 112247888887654
No 105
>PF09607 BrkDBD: Brinker DNA-binding domain; InterPro: IPR018586 This DNA-binding domain is the first approx. 100 residues of the N-terminal end of Brinker. The structure of this domain in complex with DNA consists of four alpha-helices that contain a helix-turn-helix DNA recognition motif specific for GC-rich DNA. The Brinker nuclear repressor is a major element of the Drosophila Decapentaplegic morphogen signalling pathway []. ; PDB: 2GLO_A.
Probab=22.21 E-value=36 Score=26.43 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=14.0
Q ss_pred cccCcccc------cCHHHHHHHHHHc
Q 018951 220 SCKGALRL------VHEECAIRWFSTK 240 (348)
Q Consensus 220 ~CkGslk~------VH~~CL~kWl~~k 240 (348)
+|+|++.. ||+.|+.+|+..+
T Consensus 23 nc~~~~RAaarkf~V~r~~Vr~W~kqe 49 (58)
T PF09607_consen 23 NCKGNQRAAARKFNVSRRQVRKWRKQE 49 (58)
T ss_dssp TTTT-HHHHHHHTTS-HHHHHHHHTTH
T ss_pred chhhhHHHHHHHhCccHHHHHHHHHHH
Confidence 46655443 7999999999764
No 106
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.03 E-value=38 Score=38.50 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=27.1
Q ss_pred cCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHH
Q 018951 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS 238 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~ 238 (348)
-+-.+.|++|...--..--.+-||. +.+|.+||.+=..
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~Cg-----H~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCG-----HCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhcCcceeeecc-----chHHHHHHHHHHH
Confidence 3456789999765433334578998 6999999987653
No 107
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.09 E-value=2.4e+02 Score=25.17 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=10.7
Q ss_pred ccccccCceeecc
Q 018951 243 KNCEVCGKEVQNL 255 (348)
Q Consensus 243 ~~CElCk~~y~~~ 255 (348)
..|+.|+.+|.+-
T Consensus 41 p~C~aCG~dyg~~ 53 (126)
T COG5349 41 PACEACGLDYGFA 53 (126)
T ss_pred chhhhccccccCC
Confidence 4899999999753
No 108
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.96 E-value=41 Score=38.17 Aligned_cols=44 Identities=18% Similarity=0.467 Sum_probs=31.0
Q ss_pred CeeEEeccCCCCCCeeec-cCcccCcccccCHHHHHHHHHHcCCccccccCceeecc
Q 018951 200 AVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (348)
Q Consensus 200 ~~CRICl~~~eeg~~Li~-PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~ 255 (348)
..|-+|-... +-|.+. -|. +.+|+.|+. .+...|+-|..++..+
T Consensus 841 skCs~C~~~L--dlP~VhF~Cg-----HsyHqhC~e-----~~~~~CP~C~~e~~~~ 885 (933)
T KOG2114|consen 841 SKCSACEGTL--DLPFVHFLCG-----HSYHQHCLE-----DKEDKCPKCLPELRGV 885 (933)
T ss_pred eeecccCCcc--ccceeeeecc-----cHHHHHhhc-----cCcccCCccchhhhhh
Confidence 4799995432 234443 254 689999988 4567999999988754
No 109
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=20.58 E-value=50 Score=32.72 Aligned_cols=42 Identities=21% Similarity=0.562 Sum_probs=31.4
Q ss_pred eEEeccCCC--CCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCc
Q 018951 202 CRICLDICE--EGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGK 250 (348)
Q Consensus 202 CRICl~~~e--eg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~ 250 (348)
|-||.+... .+.+-.++|. ++.|..|+..-.... .+|++|+.
T Consensus 161 cPic~e~l~~s~~~~~~~~Cg-----H~~h~~cf~e~~~~~--y~CP~C~~ 204 (276)
T KOG1940|consen 161 CPICKEYLFLSFEDAGVLKCG-----HYMHSRCFEEMICEG--YTCPICSK 204 (276)
T ss_pred CchhHHHhccccccCCccCcc-----cchHHHHHHHHhccC--CCCCcccc
Confidence 889986543 2345567888 599988887766553 89999999
Done!