BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018952
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 18/129 (13%)
Query: 45 RDGRHLAYKEHGVSKELAKYKIIFVHGFGSSRHDAAIAANL---SPEVVDELGIYIVSFD 101
+DG + +K+ G K ++F HG+ + A++ E + G ++FD
Sbjct: 6 KDGTQIYFKDWGSGK-----PVLFSHGW-------LLDADMWEYQMEYLSSRGYRTIAFD 53
Query: 102 RPGYGESD-PDPKRTRKSLALDIEELADQLGLGSKFYVVGFSM-GGQVVWSCLKYISHRL 159
R G+G SD P + A DI +L + L L + +VGFSM GG V ++ S R+
Sbjct: 54 RRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGGDVARYIARHGSARV 112
Query: 160 TGAALIAPV 168
G L+ V
Sbjct: 113 AGLVLLGAV 121
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 16/123 (13%)
Query: 50 LAYKEHGVSKELAKYKIIFVHGFGSSRH--DAAIAANLSPEVVDELGIYIVSFDRPGYGE 107
L Y++HG + ++ +HGF S H + AA L + G ++++DR G+G+
Sbjct: 15 LYYEDHGTGQ-----PVVLIHGFPLSGHSWERQSAALL------DAGYRVITYDRRGFGQ 63
Query: 108 SD-PDPKRTRKSLALDIEELADQLGLGSKFYVVGFSMG-GQVVWSCLKYISHRLTGAALI 165
S P + A D+ + + L L +VGFSMG G+V Y + R+ A +
Sbjct: 64 SSQPTTGYDYDTFAADLNTVLETLDLQDAV-LVGFSMGTGEVARYVSSYGTARIAKVAFL 122
Query: 166 APV 168
A +
Sbjct: 123 ASL 125
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 18/129 (13%)
Query: 45 RDGRHLAYKEHGVSKELAKYKIIFVHGFGSSRHDAAIAANL---SPEVVDELGIYIVSFD 101
+DG + +K+ G K ++F HG+ + A++ E + G ++FD
Sbjct: 6 KDGTQIYFKDWGSGK-----PVLFSHGW-------ILDADMWEYQMEYLSSRGYRTIAFD 53
Query: 102 RPGYGESD-PDPKRTRKSLALDIEELADQLGLGSKFYVVGFSM-GGQVVWSCLKYISHRL 159
R G+G SD P + A DI +L + L L + +VGFSM GG V ++ S R+
Sbjct: 54 RRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGGDVARYIARHGSARV 112
Query: 160 TGAALIAPV 168
G L+ V
Sbjct: 113 AGLVLLGAV 121
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 18/129 (13%)
Query: 45 RDGRHLAYKEHGVSKELAKYKIIFVHGFGSSRHDAAIAANL---SPEVVDELGIYIVSFD 101
+DG + +K+ G K ++F HG+ + A++ E + G ++FD
Sbjct: 6 KDGTQIYFKDWGSGK-----PVLFSHGW-------LLDADMWEYQMEYLSSRGYRTIAFD 53
Query: 102 RPGYGESD-PDPKRTRKSLALDIEELADQLGLGSKFYVVGFSM-GGQVVWSCLKYISHRL 159
R G+G SD P + A DI +L + L L + +VGFSM GG V ++ S R+
Sbjct: 54 RRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGGDVARYIARHGSARV 112
Query: 160 TGAALIAPV 168
G L+ V
Sbjct: 113 AGLVLLGAV 121
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 18/129 (13%)
Query: 45 RDGRHLAYKEHGVSKELAKYKIIFVHGFGSSRHDAAIAANL---SPEVVDELGIYIVSFD 101
+DG + +K+ G K ++F HG+ + A++ E + G ++FD
Sbjct: 6 KDGTQIYFKDWGSGK-----PVLFSHGW-------PLDADMWEYQMEYLSSRGYRTIAFD 53
Query: 102 RPGYGESD-PDPKRTRKSLALDIEELADQLGLGSKFYVVGFSM-GGQVVWSCLKYISHRL 159
R G+G SD P + A DI +L + L L + +VGFSM GG V ++ S R+
Sbjct: 54 RRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGGDVARYIARHGSARV 112
Query: 160 TGAALIAPV 168
G L+ V
Sbjct: 113 AGLVLLGAV 121
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 61/129 (47%), Gaps = 18/129 (13%)
Query: 45 RDGRHLAYKEHGVSKELAKYKIIFVHGFGSSRHDAAIAANL---SPEVVDELGIYIVSFD 101
+DG + +K+ G K ++F HG+ + A++ E + G ++FD
Sbjct: 6 KDGTQIYFKDWGSGK-----PVLFSHGW-------PLDADMWEYQMEYLSSRGYRTIAFD 53
Query: 102 RPGYGESD-PDPKRTRKSLALDIEELADQLGLGSKFYVVGFSM-GGQVVWSCLKYISHRL 159
R G+G SD P + A DI +L + L L + +VGFSM GG V ++ S R+
Sbjct: 54 RRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSMGGGDVARYIARHGSARV 112
Query: 160 TGAALIAPV 168
G L+ V
Sbjct: 113 AGLVLLGAV 121
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 104/254 (40%), Gaps = 43/254 (16%)
Query: 66 IIFVHGFGSSRHDAAIAANLSPEVVDELGIYIVSFDRPGYGESD-PD--PKRTRKSLALD 122
++ +HG G H A+ + P++ + ++V+ D G+G+S+ P+ P + +
Sbjct: 32 VVLLHGAGPGAHAASNWRPIIPDLAENF--FVVAPDLIGFGQSEYPETYPGHIMSWVGMR 89
Query: 123 IEE---LADQLGLGSKFYVVGFSMGGQVVWSCLKYISHRLTGAALIAPVINYWWPGFPAN 179
+E+ L + G+ K ++VG SMGG V + R AL+ V G P N
Sbjct: 90 VEQILGLMNHFGI-EKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSV------GAPMN 142
Query: 180 LTKEAYYLQLPQDQWALRVAHYAPWLAYWWNTQKLFPPSAVV---ARRPEIFSAQDVQLM 236
R A LA++ + +L P ++ PE F + +
Sbjct: 143 ----------------ARPPELARLLAFYADP-RLTPYRELIHSFVYDPENFPGMEEIVK 185
Query: 237 PKLAVRQINRAQVIQQGVHESLFRDMMIGFGTWEFDPMDLENPFPNSEGSVHLWQGDEDR 296
+ V + IQ E +F M G + P L P+ V ++ G +DR
Sbjct: 186 SRFEVANDPEVRRIQ----EVMFESMKAGMESLVIPPATLGR-LPH---DVLVFHGRQDR 237
Query: 297 LVPVILQRYISKKL 310
+VP+ Y++K L
Sbjct: 238 IVPLDTSLYLTKHL 251
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 16/123 (13%)
Query: 50 LAYKEHGVSKELAKYKIIFVHGFGSSRH--DAAIAANLSPEVVDELGIYIVSFDRPGYGE 107
L Y++HG + ++ +HGF S H + AA L + G ++++DR G+G+
Sbjct: 15 LYYEDHGAGQ-----PVVLIHGFPLSGHSWERQSAALL------DAGYRVITYDRRGFGQ 63
Query: 108 SD-PDPKRTRKSLALDIEELADQLGLGSKFYVVGFSMG-GQVVWSCLKYISHRLTGAALI 165
S P + A D+ + + L L +VGFSMG G+V Y + R+ A +
Sbjct: 64 SSQPTTGYDYDTFAADLNTVLETLDLQDAV-LVGFSMGTGEVARYVSSYGTARIAKVAFL 122
Query: 166 APV 168
A +
Sbjct: 123 ASL 125
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 50 LAYKEHGVSKELAKYKIIFVHGFGSSRH--DAAIAANLSPEVVDELGIYIVSFDRPGYGE 107
L Y++HG ++ +HGF S H + AA L + G ++++DR G+G+
Sbjct: 16 LYYEDHGTG-----VPVVLIHGFPLSGHSWERQSAALL------DAGYRVITYDRRGFGQ 64
Query: 108 SD-PDPKRTRKSLALDIEELADQLGLGSKFYVVGFSMG-GQVVWSCLKYISHRLTGAALI 165
S P + A D+ + + L L +VGFSMG G+V Y + R+ A +
Sbjct: 65 SSQPTTGYDYDTFAADLNTVLETLDLQDAV-LVGFSMGTGEVARYVSSYGTARIAAVAFL 123
Query: 166 APV 168
A +
Sbjct: 124 ASL 126
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 50 LAYKEHGVSKELAKYKIIFVHGFGSSRHDAAIAANLSPEV-VDELGIYIVSFDRPGYGES 108
L Y E GV + ++ +HG G AA N S + V ++++ D+PGYG S
Sbjct: 46 LHYHEAGVGND---QTVVLLHGGGPG---AASWTNFSRNIAVLARHFHVLAVDQPGYGHS 99
Query: 109 DPDPKRTR--KSLALDIEELADQLGLGSKFYVVGFSMGG 145
D + + + A+ ++ L DQLGLG + +VG S+GG
Sbjct: 100 DKRAEHGQFNRYAAMALKGLFDQLGLG-RVPLVGNSLGG 137
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 16/123 (13%)
Query: 50 LAYKEHGVSKELAKYKIIFVHGFGSSRH--DAAIAANLSPEVVDELGIYIVSFDRPGYGE 107
L Y++HG + ++ +HGF S H + AA L + G ++++DR G+G+
Sbjct: 15 LYYEDHGTGQ-----PVVLIHGFPLSGHSWERQSAALL------DAGYRVITYDRRGFGQ 63
Query: 108 SD-PDPKRTRKSLALDIEELADQLGLGSKFYVVGFSMG-GQVVWSCLKYISHRLTGAALI 165
S P + A D+ + + L L +VGFS G G+V Y + R+ A +
Sbjct: 64 SSQPTTGYDYDTFAADLNTVLETLDLQDAV-LVGFSTGTGEVARYVSSYGTARIAKVAFL 122
Query: 166 APV 168
A +
Sbjct: 123 ASL 125
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 50 LAYKEHGVSKELAKYKIIFVHGFGSSRHDAAIAANLSPEV-VDELGIYIVSFDRPGYGES 108
L Y E GV + ++ +HG G AA N S + V ++++ D+PGYG S
Sbjct: 26 LHYHEAGVGND---QTVVLLHGGGPG---AASWTNFSRNIAVLARHFHVLAVDQPGYGHS 79
Query: 109 DPDPKRTR--KSLALDIEELADQLGLGSKFYVVGFSMGG 145
D + + + A+ ++ L DQLGLG + +VG ++GG
Sbjct: 80 DKRAEHGQFNRYAAMALKGLFDQLGLG-RVPLVGNALGG 117
>pdb|3FSG|D Chain D, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 66 IIFVHGFGSSRHDAAIAANLSPEVVDELGIYI-VSFDRPGYGESDP-DPKRTRKSLALDI 123
IIF+HG + L E + +G Y + D PG G SDP P + L I
Sbjct: 24 IIFLHGLSLDKQSTC----LFFEPLSNVGQYQRIYLDLPGXGNSDPISPSTSDNVLETLI 79
Query: 124 EELADQLGLGSKFYVVGFSMGGQVVWSCLKYISHRLTGAALIAPVI 169
E + + +G +F + G S GG + + ++ + G L PVI
Sbjct: 80 EAIEEIIG-ARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVI 124
>pdb|3FSG|A Chain A, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|B Chain B, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|C Chain C, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 66 IIFVHGFGSSRHDAAIAANLSPEVVDELGIYI-VSFDRPGYGESDP-DPKRTRKSLALDI 123
IIF+HG + + L E + +G Y + D PG G SDP P + L I
Sbjct: 24 IIFLHGLSLDKQ----STXLFFEPLSNVGQYQRIYLDLPGXGNSDPISPSTSDNVLETLI 79
Query: 124 EELADQLGLGSKFYVVGFSMGGQVVWSCLKYISHRLTGAALIAPVI 169
E + + +G +F + G S GG + + ++ + G L PVI
Sbjct: 80 EAIEEIIG-ARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVI 124
>pdb|2YYS|A Chain A, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
pdb|2YYS|B Chain B, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
Length = 286
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 94 GIYIVSFDRPGYGESDPDPKRTR----KSLALDIEELADQLGLGSKFYVVGFSMGGQVVW 149
G +V FD+ G G S P+ R +L D LA+ LG+ +F ++ G V
Sbjct: 52 GFRVVYFDQRGSGRSLELPQDPRLFTVDALVEDTLLLAEALGV-ERFGLLAHGFGAVVAL 110
Query: 150 SCLKYISHRLTGAALIAPVINYWWPGFPANLTKEAYYLQLPQDQWALRVA 199
L+ GA L+AP +N+ W A L + A LP + L+ A
Sbjct: 111 EVLRRFPQA-EGAILLAPWVNFPW--LAARLAEAAGLAPLPDPEENLKEA 157
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 92 ELGIYIVSFDRPGYGESDPDPKRTRKSLALDIEELA---DQLGLGSKFYVVGFSMGGQVV 148
+ G +++ D GYGES P+ + + +E+ D+LGL + +G GG +V
Sbjct: 64 QAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVF-IGHDWGGMLV 122
Query: 149 WSCLKYISHRLTG-AALIAPVI 169
W + R+ A+L P I
Sbjct: 123 WYMALFYPERVRAVASLNTPFI 144
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 92 ELGIYIVSFDRPGYGESDPDPKRTRKSLALDIEELA---DQLGLGSKFYVVGFSMGGQVV 148
+ G +++ D GYGES P+ + + +E+ D+LGL + +G GG +V
Sbjct: 79 QAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVF-IGHDWGGMLV 137
Query: 149 WSCLKYISHRLTG-AALIAPVI 169
W + R+ A+L P I
Sbjct: 138 WYMALFYPERVRAVASLNTPFI 159
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 66 IIFVHGFGSSRHD-AAIAANLSPEVVDELGIYIVSFDRPGYGESDPDPKRTRKS--LALD 122
++ +HG G A + N+ P V E G ++ D PG+G+SD +S A
Sbjct: 39 VVLLHGSGPGATGWANFSRNIDPLV--EAGYRVILLDCPGWGKSDSVVNSGSRSDLNARI 96
Query: 123 IEELADQLGLGSKFYVVGFSMGGQ 146
++ + DQL + +K +++G SMGG
Sbjct: 97 LKSVVDQLDI-AKIHLLGNSMGGH 119
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 94 GIYIVSFDRPGYGESDPDPKRTRKSLALDIEELA---DQLGLGSKFYVVGFSMGGQVVWS 150
G +++ D GYGES P+ + + +E+ D+LGL + +G GG +VW
Sbjct: 285 GYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVF-IGHDWGGMLVWY 343
Query: 151 CLKYISHRLTG-AALIAPVI 169
+ R+ A+L P I
Sbjct: 344 MALFYPERVRAVASLNTPFI 363
>pdb|3KSR|A Chain A, Crystal Structure Of A Putative Serine Hydrolase (Xcc3885)
From Xanthomonas Campestris Pv. Campestris At 2.69 A
Resolution
Length = 290
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 66 IIFVHGFGSSRHDAAIAANLSPEVVDELGIYIVSFDRPGY-GESDPDPKRTRKSLALDIE 124
++FVHG+G S+H + + A E V LG +FD G+ G + TR DI+
Sbjct: 31 VLFVHGWGGSQHHSLVRAR---EAVG-LGCICXTFDLRGHEGYASXRQSVTRAQNLDDIK 86
Query: 125 ELADQLGL-----GSKFYVVGFSMGG 145
DQL VVG S GG
Sbjct: 87 AAYDQLASLPYVDAHSIAVVGLSYGG 112
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 84/227 (37%), Gaps = 43/227 (18%)
Query: 94 GIYIVSFDRPGYGESDPD-PKRTRKSLALDIEELADQLGLGSKFYVVGFSMGGQVVWSCL 152
G +V+ DR G+G S A D+ + LG+ +V + GG+VV
Sbjct: 49 GYRVVAHDRRGHGRSSQVWDGHDMDHYADDVAAVVAHLGIQGAVHVGHSTGGGEVVRYMA 108
Query: 153 KYISHRLTGAALIA--PVINYWWPGFPANLTKEAYYLQLPQDQWALRVAHYAPWLAYWWN 210
++ ++ A LIA P + PG P L K + D + +VA
Sbjct: 109 RHPEDKVAKAVLIAAVPPLMVQTPGNPGGLPKSVF------DGFQAQVA----------- 151
Query: 211 TQKLFPPSAVVARRPEIFSAQDVQLMPKLAVRQINRAQV-IQQGVHESLFRDMMIGF--- 266
+ R + + +DV P NR V +G+ + +R MIG
Sbjct: 152 -----------SNRAQFY--RDVPAGPFYG---YNRPGVEASEGIIGNWWRQGMIGSAKA 195
Query: 267 ---GTWEFDPMDLENPFPNSEGSVHLWQGDEDRLVPVILQRYISKKL 310
G F D + V + GD+D++VP +S KL
Sbjct: 196 HYDGIVAFSQTDFTEDLKGIQQPVLVMHGDDDQIVPYENSGVLSAKL 242
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 20/123 (16%)
Query: 67 IFVHGFGSSRHDAAIAANLSPEVVDELGIYIVSFDRPGYGESDPDPKRTRKSL------A 120
I +HGF + I A E ++E+G+ + D G+G+S D K +L
Sbjct: 31 IIIHGFTGHSEERHIVA--VQETLNEIGVATLRADMYGHGKS--DGKFEDHTLFKWLTNI 86
Query: 121 LDIEELADQLGLGSKFYVVGFSMGGQVVWSCLKYISHRLTGAALIAPVINYWWPGFPANL 180
L + + A +L + Y+ G S GG V + AA+ +I P PA +
Sbjct: 87 LAVVDYAKKLDFVTDIYMAGHSQGGLSV----------MLAAAMERDIIKALIPLSPAAM 136
Query: 181 TKE 183
E
Sbjct: 137 IPE 139
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 22/89 (24%)
Query: 65 KIIFVHGFGSSRH--DAAIAANLSPEVVDELGIYIVSFDRPGYGES------DPDPKRTR 116
++IF+HG G + H D I LG ++ D PG+G S + P+
Sbjct: 83 RVIFLHGGGQNAHTWDTVIVG---------LGEPALAVDLPGHGHSAWREDGNYSPQLNS 133
Query: 117 KSLALDIEELADQLGLGSKFYVVGFSMGG 145
++LA + ELA G++F VVG S+GG
Sbjct: 134 ETLAPVLRELAP----GAEF-VVGMSLGG 157
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 92 ELGIYIVSFDRPGYGESDPDPKRTRKSLALDIEELA---DQLGLGSKFYVVGFSMGGQVV 148
+ G +++ D GYG+S P+ ++ L +E+ D+LG+ + +G G +V
Sbjct: 281 QAGFRVLAIDMKGYGDSSSPPEIEEYAMELLCKEMVTFLDKLGIPQAVF-IGHDWAGVMV 339
Query: 149 WSCLKYISHRLTGAA 163
W+ + R+ A
Sbjct: 340 WNMALFYPERVRAVA 354
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 18/97 (18%)
Query: 246 RAQVIQQGVHESLFRDMMIG-----FGTW----------EFDPMDLENPFP---NSEGSV 287
RA++++ ++L D+ +G F W + D N P N V
Sbjct: 175 RARLLENFSRKTLNDDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYRNIAAPV 234
Query: 288 HLWQGDEDRLVPVILQRYISKKLPWIRYHEIPGSGHL 324
+ +D + P L R ++ LP RY +IP +GHL
Sbjct: 235 LVIGFADDVVTPPYLGREVADALPNGRYLQIPDAGHL 271
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 97 IVSFDRPGYGESDPDP------KRTRKSLALDIEELADQLGLGSKFYVVGFSMGGQVVWS 150
+V+ D GYG+S +++ +A D E+ +LG +FYVVG G +V
Sbjct: 54 VVATDLRGYGDSSRPASVPHHINYSKRVMAQDQVEVMSKLGY-EQFYVVGHDRGARVAHR 112
Query: 151 CLKYISHRLTGAAL--IAPV 168
HR+ AL IAP
Sbjct: 113 LALDHPHRVKKLALLDIAPT 132
>pdb|1L3X|A Chain A, Solution Structure Of Novel Disintegrin Salmosin
Length = 73
Score = 28.5 bits (62), Expect = 5.9, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 29 CGSPGGPAITAPRIKLRDGRHLA 51
CGSPG P A KLR G A
Sbjct: 8 CGSPGNPCCDAATCKLRQGAQCA 30
>pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat
pdb|2GBC|B Chain B, Native Dpp-Iv (Cd26) From Rat
pdb|2GBF|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBF|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBG|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBG|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBI|A Chain A, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2GBI|B Chain B, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2I3Z|A Chain A, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2I3Z|B Chain B, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2OAE|A Chain A, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|2OAE|B Chain B, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|4FFV|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 730
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 16/132 (12%)
Query: 74 SSRHDAAIAANLSPEVVDELGIYIVSFDRPGYG-ESDPDPKRTRKSLALDIEELADQLGL 132
S + DAA N + + I + SFD G G + D K L E+ DQ+
Sbjct: 516 SQKADAAFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINKRLG--TLEVEDQIEA 573
Query: 133 GSKFYVVGFSMGGQVV---WSCLKYISHRLTGAA--------LIAPVINYWWPGFPANLT 181
+F +GF +V WS Y++ + G+ +APV W + + T
Sbjct: 574 ARQFLKMGFVDSKRVAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSR--WEYYDSVYT 631
Query: 182 KEAYYLQLPQDQ 193
+ L P+D
Sbjct: 632 ERYMGLPTPEDN 643
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,626,911
Number of Sequences: 62578
Number of extensions: 516213
Number of successful extensions: 971
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 961
Number of HSP's gapped (non-prelim): 39
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)