BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018953
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 117/266 (43%), Gaps = 40/266 (15%)
Query: 63 LKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLD 122
L S+++KAL EL+ L D+ G + D LL+FLRAR F V
Sbjct: 26 LDSAQEKALAELRKLLEDA-----------------GFIERLDDSTLLRFLRARKFDVQL 68
Query: 123 SFNMLEKCLAWRKEFGADGIVEEDLGFKELEGVVAYMQGY----DREGHPVCYNAYGVFR 178
+ M E C WRK++G D I+ +D + E + + Y D++G PV + G
Sbjct: 69 AKEMFENCEKWRKDYGTDTIL-QDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVN 127
Query: 179 DKDMYERIFGDDEKLKKF-------LRWRVQVLERGINLLHFKPGGVNSIIQVTDLKDMP 231
+M ++ ++ LK +++R+ R L V + + DLK +
Sbjct: 128 LHEM-NKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHL------VETSCTIMDLKGIS 180
Query: 232 KRELRVASNQILS---LFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVIS 288
+ + + Q+ YPE + + IN P+ FS + +F PFL T SK I
Sbjct: 181 ISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFIL 240
Query: 289 KEGNVAETLYKFVRPEDIPVQYGGLS 314
E L K + E++PV++GG S
Sbjct: 241 GSSYQKELL-KQIPAENLPVKFGGKS 265
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 128/285 (44%), Gaps = 37/285 (12%)
Query: 60 VSQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFR 119
V L +K+AL + + + D +P L D D LL++LRAR F
Sbjct: 5 VGDLSPRQKEALAKFRENVQDV-------------LPALPNPD---DYFLLRWLRARSFD 48
Query: 120 VLDSFNMLEKCLAWRKEFGADGIVEEDLGFKELEGVVAY----MQGYDREGHPVCYNAYG 175
+ S ML K + +RK+ D I+ ++ E + Y M GYD +G PV Y+ G
Sbjct: 49 LQKSEAMLRKHVEFRKQKDIDNII----SWQPPEVIQQYLSGGMCGYDLDGCPVWYDIIG 104
Query: 176 VFRDKDMYERIFGDDEK--LKKFLRWRVQVLERGINLLHFKPGGVNSIIQVTDLKDMPKR 233
K + +F ++ L+ +R +L+ + V +I + D + + +
Sbjct: 105 PLDAKGL---LFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLK 161
Query: 234 ELRV----ASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISK 289
L A + L +F++NYPE + R + P F + Y++ PFL++ T+ K ++
Sbjct: 162 HLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLG 221
Query: 290 EGNVAETLYKFVRPEDIPVQYGGLSRPSDLNHGPPKPASEFTVKG 334
N E L K + P+ +PV+YGG D G PK S+ G
Sbjct: 222 -ANWKEVLLKHISPDQVPVEYGGTMTDPD---GNPKCKSKINYGG 262
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 128/285 (44%), Gaps = 37/285 (12%)
Query: 60 VSQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFR 119
V L +K+AL + + + D +P L D D LL++LRAR F
Sbjct: 5 VGDLSPRQKEALAKFRENVQDV-------------LPALPNPD---DYFLLRWLRARSFD 48
Query: 120 VLDSFNMLEKCLAWRKEFGADGIVEEDLGFKELEGVVAY----MQGYDREGHPVCYNAYG 175
+ S ML K + +RK+ D I+ ++ E + Y M GYD +G PV Y+ G
Sbjct: 49 LQKSEAMLRKHVEFRKQKDIDNII----SWQPPEVIQQYLSGGMCGYDLDGCPVWYDIIG 104
Query: 176 VFRDKDMYERIFGDDEK--LKKFLRWRVQVLERGINLLHFKPGGVNSIIQVTDLKDMPKR 233
K + +F ++ L+ +R +L+ + V +I + D + + +
Sbjct: 105 PLDAKGL---LFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLK 161
Query: 234 ELRV----ASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISK 289
L A + L +F++NYPE + R + P F + Y++ PFL++ T+ K ++
Sbjct: 162 HLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLG 221
Query: 290 EGNVAETLYKFVRPEDIPVQYGGLSRPSDLNHGPPKPASEFTVKG 334
N E L K + P+ +PV+YGG D G PK S+ G
Sbjct: 222 -ANWKEVLLKHISPDQVPVEYGGTMTDPD---GNPKCKSKINYGG 262
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 122/284 (42%), Gaps = 35/284 (12%)
Query: 60 VSQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFR 119
V L +K+AL + + + D +P L D D LL++LRAR F
Sbjct: 5 VGDLSPRQKEALAKFRENVQDV-------------LPALPNPD---DYFLLRWLRARSFD 48
Query: 120 VLDSFNMLEKCLAWRKEFGADGIVEEDLGFKELEGVVAYMQG----YDREGHPVCYNAYG 175
+ S L K + +RK+ D I+ ++ E + Y+ G YD +G PV Y+ G
Sbjct: 49 LQKSEAXLRKHVEFRKQKDIDNII----SWQPPEVIQQYLSGGXCGYDLDGCPVWYDIIG 104
Query: 176 VFRDKDMYERIFGDDEKLKKFLRWRVQVLERGINLLHFKPG-GVNSIIQVTDLKDMPKRE 234
K + + L + ++L + K G V +I + D + + +
Sbjct: 105 PLDAKGLL--FSASKQDLLRTKXRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKH 162
Query: 235 LRV----ASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKE 290
L A + L F++NYPE + R + P F + Y++ PFL++ T+ K +
Sbjct: 163 LWKPAVEAYGEFLCXFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIXVLG- 221
Query: 291 GNVAETLYKFVRPEDIPVQYGGLSRPSDLNHGPPKPASEFTVKG 334
N E L K + P+ +PV+YGG D G PK S+ G
Sbjct: 222 ANWKEVLLKHISPDQVPVEYGGTXTDPD---GNPKCKSKINYGG 262
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 104/235 (44%), Gaps = 30/235 (12%)
Query: 106 DVILLKFLRARDFRVLDSFNMLEKCLAWRKEFGADGIVEEDLGFKELEG---------VV 156
D LL+FLRAR F + S M + WR+E+GA+ I+E+ KE E
Sbjct: 61 DSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYP 120
Query: 157 AYMQGYDREGHPVCYNAYGVFRDKDMYERIFGDDEKLKK-------FLRWRVQVLERGIN 209
Y D++G P+ + G K MY +I + + L+ F +RV R
Sbjct: 121 QYYHHVDKDGRPLYFEELGGINLKKMY-KITTEKQMLRNLVKEYELFATYRVPACSRRAG 179
Query: 210 LLHFKPGGVNSIIQVTDLKDMP-KRELRVAS--NQILSLFQDNYPEMVARKIFINVPWYF 266
L + + V DLK + V S + + Q+ YPE + + I+ P+ F
Sbjct: 180 YL------IETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGF 233
Query: 267 SMLYSMFSPFLTQRTKSKFVISKEGNVAETLYKFVRPEDIPVQYGG---LSRPSD 318
S ++ M PFL T SK I E L K + E++PV+YGG L P+D
Sbjct: 234 STMFKMVKPFLDPVTVSKIFILGSSYKKELL-KQIPIENLPVKYGGTSVLHNPND 287
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 104/235 (44%), Gaps = 30/235 (12%)
Query: 106 DVILLKFLRARDFRVLDSFNMLEKCLAWRKEFGADGIVEEDLGFKELEG---------VV 156
D LL+FLRAR F + S M + WR+E+GA+ I+E+ KE E
Sbjct: 61 DSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYP 120
Query: 157 AYMQGYDREGHPVCYNAYGVFRDKDMYERIFGDDEKLKK-------FLRWRVQVLERGIN 209
Y D++G P+ + G K MY +I + + L+ F +RV R
Sbjct: 121 QYYHHVDKDGRPLYFAELGGINLKKMY-KITTEKQMLRNLVKEYELFATYRVPACSRRAG 179
Query: 210 LLHFKPGGVNSIIQVTDLKDMP-KRELRVAS--NQILSLFQDNYPEMVARKIFINVPWYF 266
L + + V DLK + V S + + Q+ YPE + + I+ P+ F
Sbjct: 180 YL------IETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGF 233
Query: 267 SMLYSMFSPFLTQRTKSKFVISKEGNVAETLYKFVRPEDIPVQYGG---LSRPSD 318
S ++ M PFL T SK I E L K + E++PV+YGG L P+D
Sbjct: 234 STMFKMVKPFLDPVTVSKIFILGSSYKKELL-KQIPIENLPVKYGGTSVLHNPND 287
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 94/221 (42%), Gaps = 38/221 (17%)
Query: 109 LLKFLRARDFRVLDSFNMLEKCLAWRKEFGADGIVEE-------DLGFKELEGVVAYMQG 161
L++LRA + + D + + LAWR+EFG + EE DL E E + G
Sbjct: 90 FLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILG 149
Query: 162 YDREGHPVCYNAYGVFRDKDMYERIFGDDEKLKKFLRWRVQVLERGINLLHFKPGGVNSI 221
Y+ + P+ Y G K + ++ + V +LER I+ F P G +S+
Sbjct: 150 YENDARPILYLKPGRQNTKTSHRQV-----------QHLVFMLERVID---FMPAGQDSL 195
Query: 222 IQVTDLKDMPKRELRVASN----------QILSLFQDNYPEMVARKIFINVPWYFSMLYS 271
+ D KD P +V N ++L + Q +YPE + + + N+PW
Sbjct: 196 ALLIDFKDYPDVP-KVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLK 254
Query: 272 MFSPFLTQRTKSKFVISKEGNVAETLYKFVRPEDIPVQYGG 312
+ PF+ T+ K V E K+V ++ YGG
Sbjct: 255 LIHPFIDPLTREKLVFD------EPFVKYVPKNELDSLYGG 289
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 101/229 (44%), Gaps = 30/229 (13%)
Query: 94 GIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKCLAWRKEFGADGIVEEDLGFKELE 153
G+PL D LL+FLRARDF + ++ +L+ WR E + DL + +
Sbjct: 39 GVPLAPL--PLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPE---ISADLHPRSII 93
Query: 154 GVVAYMQGYDREGHPVCYNAYGVFRDKD-------MYERIFGDDEKLKKFLRWRVQVL-- 204
G++ GY +GV R +D +Y D + + +RV ++
Sbjct: 94 GLLK--AGY-----------HGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITS 140
Query: 205 ERGINLLHFKPGGVNSIIQVTDLKDMPKRELRVA-SNQILSLFQDNYPEMVARKIFINVP 263
E + + + G+ +I + + ++ + + +I ++ D++P V IN P
Sbjct: 141 ELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEP 200
Query: 264 WYFSMLYSMFSPFLTQRTKSKFVISKEGNVAETLYKFVRPEDIPVQYGG 312
F ++SM PFLT++ K + + L F P+ +P++YGG
Sbjct: 201 VIFHAVFSMIKPFLTEKIKERIHMHGNNYKQSLLQHF--PDILPLEYGG 247
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 100/219 (45%), Gaps = 30/219 (13%)
Query: 105 ADVILLKFLRARDFRVLDSFNMLEKCLAWRKEFGADGIVEEDLGFKELEGVVAYMQGYDR 164
D LL+FLRARDF + ++ +L+ WR E + DL + + G++ GY
Sbjct: 32 TDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPE---ISADLHPRSIIGLLK--AGY-- 84
Query: 165 EGHPVCYNAYGVFRDKD-------MYERIFGDDEKLKKFLRWRVQVL--ERGINLLHFKP 215
+GV R +D +Y D + + +RV ++ E + + +
Sbjct: 85 ---------HGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQR 135
Query: 216 GGVNSIIQVTDLKDMPKRELRVA-SNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFS 274
G+ +I + + ++ + + +I ++ D++P V IN P F ++S
Sbjct: 136 NGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSXIK 195
Query: 275 PFLTQRTKSKFVISKEG-NVAETLYKFVRPEDIPVQYGG 312
PFLT++ K + I G N ++L + P+ +P++YGG
Sbjct: 196 PFLTEKIKER--IHXHGNNYKQSLLQHF-PDILPLEYGG 231
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/259 (20%), Positives = 113/259 (43%), Gaps = 25/259 (9%)
Query: 60 VSQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFR 119
+++ + + ++A++EL+ + + SGE + + E+ L+F+RAR F
Sbjct: 51 LNEREETREEAVRELQE-MVQAQAASGEE----LAVAVAERVQEKDSGFFLRFIRARKFN 105
Query: 120 VLDSFNMLEKCLAWRKEFGA--DGIVEEDLGFKELEGVVAYMQGYDREGHPVCYNAYGVF 177
V ++ +L + +R ++ D + E + G + D+ G V +F
Sbjct: 106 VGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVM-----LF 160
Query: 178 RDKDMYERIFGDDEKLKKFLRWRVQVLERGINLLHFKPGGVNSIIQVTDLKDMPKRE--- 234
++ + DE L+ + +LE+ LL + +N + + K ++
Sbjct: 161 NIENWQSQEITFDEILQAYCF----ILEK---LLENEETQINGFCIIENFKGFTMQQAAS 213
Query: 235 LRVAS-NQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNV 293
LR + +++ + QD++P FI+ PWYF+ Y++ PFL + + + G+
Sbjct: 214 LRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFV--HGDD 271
Query: 294 AETLYKFVRPEDIPVQYGG 312
Y+ + +P +GG
Sbjct: 272 LSGFYQEIDENILPSDFGG 290
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/259 (20%), Positives = 111/259 (42%), Gaps = 25/259 (9%)
Query: 60 VSQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFR 119
+++ + + ++A++EL+ + + SGE + + E+ L+F+RAR F
Sbjct: 51 LNEREETREEAVRELQEXV-QAQAASGEE----LAVAVAERVQEKDSGFFLRFIRARKFN 105
Query: 120 VLDSFNMLEKCLAWRKEFGA--DGIVEEDLGFKELEGVVAYMQGYDREGHPVCYNAYGVF 177
V ++ +L + +R ++ D + E + G + D+ G V +F
Sbjct: 106 VGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVV-----XLF 160
Query: 178 RDKDMYERIFGDDEKLKKFLRWRVQVLERGINLLHFKPGGVNSIIQVTDLKDMPKRE--- 234
++ + DE L+ + +LE+ LL + +N + + K ++
Sbjct: 161 NIENWQSQEITFDEILQAYCF----ILEK---LLENEETQINGFCIIENFKGFTXQQAAS 213
Query: 235 LRVAS-NQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNV 293
LR + + + QD++P FI+ PWYF+ Y++ PFL + + + G+
Sbjct: 214 LRTSDLRKXVDXLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFV--HGDD 271
Query: 294 AETLYKFVRPEDIPVQYGG 312
Y+ + +P +GG
Sbjct: 272 LSGFYQEIDENILPSDFGG 290
>pdb|3VBB|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|B Chain B, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|C Chain C, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|D Chain D, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|E Chain E, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
pdb|3VBB|F Chain F, Crystal Structure Of Seryl-Trna Synthetase From Human At
2.9 Angstroms
Length = 522
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 284 KFVISKEGNVAETLYK--FVRPEDIPVQYGGLS 314
K++I+ L++ ++RPED+P++Y GLS
Sbjct: 266 KYLIATSEQPIAALHRDEWLRPEDLPIKYAGLS 298
>pdb|3VSF|A Chain A, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|B Chain B, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|C Chain C, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|D Chain D, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|E Chain E, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSF|F Chain F, Crystal Structure Of 1,3gal43a, An
Exo-Beta-1,3-Galactanase From Clostridium Thermocellum
pdb|3VSZ|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VSZ|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Galactan
pdb|3VT0|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT0|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Lactose
pdb|3VT1|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT1|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With Galactose
pdb|3VT2|A Chain A, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|B Chain B, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|C Chain C, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|D Chain D, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|E Chain E, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
pdb|3VT2|F Chain F, Crystal Structure Of Ct1,3gal43a In Complex With
Isopropy-Beta-D- Thiogalactoside
Length = 526
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 136 EFGADGIVEEDLGFKELEGVVAYMQGYDREGHPVCYNAYGVFRD 179
EF A+G++ FK+ G V + G H Y YG +RD
Sbjct: 35 EFAAEGVIVNGTQFKDTSGNVIHAHGGGMLKHGDYYYWYGEYRD 78
>pdb|3L51|B Chain B, Crystal Structure Of The Mouse Condensin Hinge Domain
Length = 166
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 98 LGTGDERADVILLKFLRARDFRVLDSFNMLEKCLAWRKE 136
LG DE+ D+ + A D+ V+DS + ++C+ + K+
Sbjct: 26 LGAIDEKYDIAISSCCHALDYIVVDSIDTAQECVNFLKK 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,162,384
Number of Sequences: 62578
Number of extensions: 434537
Number of successful extensions: 835
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 798
Number of HSP's gapped (non-prelim): 20
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)