Query 018953
Match_columns 348
No_of_seqs 203 out of 1522
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 08:36:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olm_A SEC14-like protein 2; l 100.0 5E-50 1.7E-54 388.5 27.7 267 57-346 2-298 (403)
2 3q8g_A CRAL-TRIO domain-contai 100.0 1.1E-49 3.9E-54 373.7 19.4 260 35-322 12-288 (320)
3 1aua_A Phosphatidylinositol tr 100.0 6.7E-48 2.3E-52 358.8 23.1 242 55-319 18-270 (296)
4 3hx3_A Retinaldehyde-binding p 100.0 1.8E-48 6.3E-53 365.3 17.8 258 22-319 24-297 (316)
5 1r5l_A Alpha-TTP, protein (alp 100.0 3.6E-46 1.2E-50 341.0 18.9 227 61-316 2-235 (262)
6 3pg7_A Neurofibromin; SEC lipi 99.2 3.5E-11 1.2E-15 108.5 6.8 130 156-306 12-144 (256)
7 3peg_A Neurofibromin; SEC14 do 99.0 5.2E-10 1.8E-14 102.4 5.9 130 156-306 31-163 (290)
8 2dam_A ETEA protein; KIAA0887, 83.0 3.7 0.00013 28.2 6.1 45 61-128 12-56 (67)
9 2dal_A Protein KIAA0794; FAS a 79.6 5.2 0.00018 27.0 5.9 45 60-128 8-52 (62)
10 1ufz_A Hypothetical protein BA 78.4 10 0.00035 27.1 7.2 52 61-130 24-75 (83)
11 1wgl_A TOLL-interacting protei 72.4 5.7 0.0002 26.5 4.4 27 103-129 22-48 (59)
12 2q3l_A Uncharacterized protein 62.5 35 0.0012 26.1 7.9 72 200-280 38-111 (126)
13 1wgn_A UBAP1, ubiquitin associ 62.5 21 0.0007 24.0 5.4 46 60-130 12-57 (63)
14 2dhy_A CUE domain-containing p 60.5 16 0.00055 25.0 4.9 28 103-130 31-58 (67)
15 2knz_A Ubiquilin-4; cytoplasm, 59.5 28 0.00097 22.3 5.8 25 105-129 25-49 (53)
16 1z96_A DNA-damage, UBA-domain 59.1 11 0.00038 22.4 3.5 23 105-127 17-39 (40)
17 2bwb_A Ubiquitin-like protein 59.0 23 0.00078 22.1 5.1 24 105-128 21-44 (46)
18 1wr1_B Ubiquitin-like protein 57.7 22 0.00074 23.5 5.0 25 105-129 31-55 (58)
19 1oai_A Nuclear RNA export fact 53.4 46 0.0016 22.0 6.6 28 104-131 20-47 (59)
20 2dna_A Unnamed protein product 52.9 36 0.0012 23.2 5.6 27 104-130 32-58 (67)
21 2dah_A Ubiquilin-3; UBA domain 52.9 17 0.00058 23.7 3.8 26 105-130 23-48 (54)
22 1v92_A NSFL1 cofactor P47; 3-h 51.2 13 0.00046 22.9 3.0 24 105-128 19-42 (46)
23 2jp7_A MRNA export factor MEX6 51.1 48 0.0016 21.8 5.8 26 104-129 19-44 (57)
24 2di0_A Activating signal coint 49.5 48 0.0016 22.9 5.8 27 103-129 26-52 (71)
25 1wji_A Tudor domain containing 48.7 44 0.0015 22.4 5.5 27 104-130 21-47 (63)
26 1q02_A Sequestosome 1; helical 44.9 23 0.00079 22.8 3.3 26 103-128 23-48 (52)
27 3lay_A Zinc resistance-associa 44.7 24 0.00083 29.0 4.4 65 61-138 66-130 (175)
28 1vej_A Riken cDNA 4931431F19; 44.2 22 0.00076 24.8 3.5 25 105-129 43-67 (74)
29 2jy5_A Ubiquilin-1; UBA, alter 43.9 23 0.00077 22.8 3.3 24 105-128 26-49 (52)
30 1otr_A Protein CUE2; protein-p 43.7 29 0.00098 22.1 3.7 27 104-130 18-44 (49)
31 1ify_A HHR23A, UV excision rep 43.2 22 0.00077 22.4 3.2 26 104-129 20-45 (49)
32 1vg5_A RSGI RUH-014, rhomboid 39.7 50 0.0017 22.9 4.8 26 104-129 41-66 (73)
33 1veg_A NEDD8 ultimate buster-1 39.6 67 0.0023 22.9 5.5 27 104-130 41-67 (83)
34 2g3q_A Protein YBL047C; endocy 39.3 31 0.001 20.9 3.3 25 105-129 17-41 (43)
35 2cwb_A Chimera of immunoglobul 37.2 32 0.0011 25.9 3.6 25 105-129 80-104 (108)
36 2cp8_A NEXT to BRCA1 gene 1 pr 36.6 82 0.0028 20.4 5.1 26 104-129 22-47 (54)
37 2dak_A Ubiquitin carboxyl-term 36.2 82 0.0028 20.8 5.3 26 105-130 22-47 (63)
38 2dzl_A Protein FAM100B; UBA-li 36.0 33 0.0011 23.2 3.3 23 105-127 31-53 (66)
39 2qsf_X RAD23, UV excision repa 35.3 76 0.0026 25.9 5.9 44 60-128 123-166 (171)
40 3e21_A HFAF1, FAS-associated f 34.8 31 0.0011 21.5 2.7 20 107-126 22-41 (45)
41 3itf_A Periplasmic adaptor pro 31.9 1.6E+02 0.0056 23.1 7.3 59 62-136 45-103 (145)
42 1wiv_A UBP14, ubiquitin-specif 30.0 88 0.003 21.5 4.8 25 105-129 42-66 (73)
43 2dae_A KIAA0733 protein; mitog 28.7 69 0.0024 22.0 3.8 40 68-130 11-50 (75)
44 3o39_A Periplasmic protein rel 28.5 1.2E+02 0.004 22.7 5.5 58 62-135 17-74 (108)
45 2d9s_A CBL E3 ubiquitin protei 28.0 89 0.0031 20.2 4.0 27 104-130 21-47 (53)
46 2ooa_A E3 ubiquitin-protein li 26.8 98 0.0033 19.9 4.0 27 104-130 23-49 (52)
47 3ct6_A PTS-dependent dihydroxy 26.2 82 0.0028 24.3 4.5 43 219-273 59-101 (131)
48 2dai_A Ubadc1, ubiquitin assoc 22.7 1.6E+02 0.0053 20.8 5.0 26 105-130 42-67 (83)
49 3dct_B Nuclear receptor coacti 22.4 54 0.0018 16.6 1.7 14 104-117 3-16 (21)
50 1whc_A RSGI RUH-027, UBA/UBX 3 21.0 1.1E+02 0.0039 20.3 3.8 27 104-130 21-48 (64)
51 2h6f_A Protein farnesyltransfe 20.8 1.5E+02 0.0053 27.0 6.1 26 107-132 134-160 (382)
52 3b48_A Uncharacterized protein 20.7 1.4E+02 0.0049 22.9 5.0 44 219-270 65-108 (135)
No 1
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=5e-50 Score=388.48 Aligned_cols=267 Identities=27% Similarity=0.446 Sum_probs=226.1
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 018953 57 SYFVSQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKCLAWRKE 136 (348)
Q Consensus 57 ~~~l~~l~~~e~~~l~~Lr~~l~~~~~~~~~~~~~~~~~p~l~~~~~~~D~~LlRFLra~~~dv~~A~~~l~~~l~wR~~ 136 (348)
+|++++|+++|+++|++||++|++.. +++ ...+|.+|+||||||+||+++|.++|+++++||++
T Consensus 2 ~g~~~~l~~~q~~~l~~lr~~l~~~~-------------~~l---~~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~ 65 (403)
T 1olm_A 2 SGRVGDLSPRQKEALAKFRENVQDVL-------------PAL---PNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQ 65 (403)
T ss_dssp CSBTTBCCHHHHHHHHHHHHHHGGGG-------------GGS---SCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHHHhhc-------------cCC---CCCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999885 334 25789999999999999999999999999999999
Q ss_pred hCCCCCcccCCChhhhcc-ceeeeeccCCCCCcEEEEecCccCcchhhhhhcCCHHHHHHHHHHHHHHHHHHHHhhccC-
Q 018953 137 FGADGIVEEDLGFKELEG-VVAYMQGYDREGHPVCYNAYGVFRDKDMYERIFGDDEKLKKFLRWRVQVLERGINLLHFK- 214 (348)
Q Consensus 137 ~~~~~i~~~~l~~~~l~~-~~~~~~G~Dk~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~- 214 (348)
++++++...... +.+.. ...+++|+|++||||+++++|++|+++++... +.++++|+.++++|.+++.+..+
T Consensus 66 ~~~~~i~~~~~~-~~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~-----~~~~~~r~~~~~~E~~~~~~~~~s 139 (403)
T 1olm_A 66 KDIDNIISWQPP-EVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSA-----SKQDLLRTKMRECELLLQECAHQT 139 (403)
T ss_dssp TTGGGGGGSCCC-HHHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTS-----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcccccCCH-HHHHHhCCceeeccCCCcCEEEEEecCCCChHHhhccC-----CHHHHHHHHHHHHHHHHHHHHhhH
Confidence 998877652222 33332 22357899999999999999999998765432 47789999999999998876432
Q ss_pred ---CCCcceEEEEEecCCCCchhHH----HHHHHHHHHHhhhchhhcceEEEEeCChhHHHHHHHHhhcCCccccccEEE
Q 018953 215 ---PGGVNSIIQVTDLKDMPKRELR----VASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVI 287 (348)
Q Consensus 215 ---~~~v~~~v~IiDl~g~s~~~l~----~~~k~~~~~lq~~yPerl~~i~ivN~P~~~~~iw~lvkpfL~~~t~~KI~~ 287 (348)
..++.|+++|+|++|+++++++ ..++.++.++|++||+|++++||||+|++|+++|+++||||+++|++||+|
T Consensus 140 ~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~ 219 (403)
T 1olm_A 140 TKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMV 219 (403)
T ss_dssp HHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEE
T ss_pred HhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEE
Confidence 1258899999999999999873 568999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcHHHHhccCCCCCCCccCCCCCCCCCC--------CCCCCC------------CCce-eEecCCceEEEEeeecc
Q 018953 288 SKEGNVAETLYKFVRPEDIPVQYGGLSRPSDL--------NHGPPK------------PASE-FTVKGGEKVNIQIEGIE 346 (348)
Q Consensus 288 ~~~~~~~~~L~~~i~~~~LP~~yGG~~~~~~~--------~~~~~~------------~~~~-~~v~~~~~~~~~~~~~~ 346 (348)
+++ ++.+.|.++|++++||++|||++.+.+. ++|+++ +..+ ++|++|++++|+|++.+
T Consensus 220 ~~~-~~~~~L~~~I~~~~LP~~yGG~~~~~~~~~~c~~~i~~gg~vp~~~~~~~~~~~~~~~~~~V~~g~~~~v~~~v~~ 298 (403)
T 1olm_A 220 LGA-NWKEVLLKHISPDQVPVEYGGTMTDPDGNPKCKSKINYGGDIPRKYYVRDQVKQQYEHSVQISRGSSHQVEYEILF 298 (403)
T ss_dssp CCT-THHHHHTTTSCGGGSBGGGTSSBCCTTCCTTCTTTCBCCCCCCGGGCSCSSCCCCCSEEEEECTTCEEEEEEEECS
T ss_pred ECh-hHHHHHHhhcChhhCchhhCCCcCCCCCCcccccccccCCCCCcccccCCCcccccceEEEEcCCCEEEEEEEEcC
Confidence 984 6678999999999999999999987643 334432 2335 99999999999999874
No 2
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=1.1e-49 Score=373.74 Aligned_cols=260 Identities=26% Similarity=0.374 Sum_probs=214.2
Q ss_pred ccceeEeeecccccCCCCccccccccCCCCHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCCCchHHHHHHHHH
Q 018953 35 KKSFVASLMEAATLRSPSFKEDSYFVSQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLR 114 (348)
Q Consensus 35 ~~~~~~~~~~~~~~~~~s~k~~~~~l~~l~~~e~~~l~~Lr~~l~~~~~~~~~~~~~~~~~p~l~~~~~~~D~~LlRFLr 114 (348)
.+++.+++.+.+. .+..++++++||++|+++|++||+||++.+ + ..+.||.+|+||||
T Consensus 12 ~~~~~~~~~~~~~-----~~~~~g~~~~lt~~q~~~l~~lR~~l~~~~--------------~---~~~~dD~~LLRFLR 69 (320)
T 3q8g_A 12 TTSILDTYPQICS-----PNALPGTPGNLTKEQEEALLQFRSILLEKN--------------Y---KERLDDSTLLRFLR 69 (320)
T ss_dssp --CGGGGSCCSCC-----TTSCTTSTTCCCHHHHHHHHHHHHHHHHTT--------------C---CSSCSHHHHHHHHH
T ss_pred hhhHhhcCCCCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHHHhcC--------------C---CCCCCHHHHHHHHH
Confidence 3456666665432 346778999999999999999999999885 1 14689999999999
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHhCCCCCcccC-CC-------hhhh-ccceeeeeccCCCCCcEEEEecCccCcchhhhh
Q 018953 115 ARDFRVLDSFNMLEKCLAWRKEFGADGIVEED-LG-------FKEL-EGVVAYMQGYDREGHPVCYNAYGVFRDKDMYER 185 (348)
Q Consensus 115 a~~~dv~~A~~~l~~~l~wR~~~~~~~i~~~~-l~-------~~~l-~~~~~~~~G~Dk~GrpV~~~~~~~~~~~~~~~~ 185 (348)
||+|||++|.++|+++++||++++++++..+. .. ...+ ..+..+++|+|++||||+|+++|++|+.+++..
T Consensus 70 Arkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~ 149 (320)
T 3q8g_A 70 ARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKI 149 (320)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhcc
Confidence 99999999999999999999999988765321 11 0112 334568899999999999999999998876543
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHhhc----cC-CCCcceEEEEEecCCCCchhHH---HHHHHHHHHHhhhchhhcceE
Q 018953 186 IFGDDEKLKKFLRWRVQVLERGINLLH----FK-PGGVNSIIQVTDLKDMPKRELR---VASNQILSLFQDNYPEMVARK 257 (348)
Q Consensus 186 ~~~~~~~~~~~~r~~~~~lE~~~~~~~----~~-~~~v~~~v~IiDl~g~s~~~l~---~~~k~~~~~lq~~yPerl~~i 257 (348)
. +.+++++++++.+|.+++.+. .. ...++++++|+|++|++++++. ..++.++.++|++||+|++++
T Consensus 150 ~-----~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i 224 (320)
T 3q8g_A 150 T-----TEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKF 224 (320)
T ss_dssp C-----CHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEE
T ss_pred C-----CHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceE
Confidence 2 366789999999998764311 11 1247889999999999999885 578999999999999999999
Q ss_pred EEEeCChhHHHHHHHHhhcCCccccccEEEecCCCcHHHHhccCCCCCCCccCCCCCCCCCCCCC
Q 018953 258 IFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNVAETLYKFVRPEDIPVQYGGLSRPSDLNHG 322 (348)
Q Consensus 258 ~ivN~P~~~~~iw~lvkpfL~~~t~~KI~~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~~~~~~~ 322 (348)
||||+|++|+++|+++||||+++|++||+|++ +++.+.|.++|++++||++|||++++.+..-|
T Consensus 225 ~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~-~~~~~~L~~~i~~~~LP~~yGG~~~~~~~~gg 288 (320)
T 3q8g_A 225 YIIHSPFGFSTMFKMVKPFLDPVTVSKIFILG-SSYKKELLKQIPIENLPVKYGGTSVLHNPNDK 288 (320)
T ss_dssp EEESCCTTHHHHHTTTGGGSCHHHHHTEEECC-TTHHHHHHHHSCGGGSBGGGTSCBCCSSTTSC
T ss_pred EEECCCHHHHHHHHHHHHhCCHHHhhhEEEeC-CCcHHHHHhhCChhhCChhhCCCCCCCCCCCC
Confidence 99999999999999999999999999999998 35678999999999999999999998665444
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=6.7e-48 Score=358.80 Aligned_cols=242 Identities=28% Similarity=0.418 Sum_probs=205.3
Q ss_pred ccccccCCCCHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 018953 55 EDSYFVSQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKCLAWR 134 (348)
Q Consensus 55 ~~~~~l~~l~~~e~~~l~~Lr~~l~~~~~~~~~~~~~~~~~p~l~~~~~~~D~~LlRFLra~~~dv~~A~~~l~~~l~wR 134 (348)
..++++++|+++|+++|++||++|++.+ + ....+|.+|+|||||++||+++|.++|+++++||
T Consensus 18 ~~~~~~~~l~~~q~~~l~~lr~~l~~~~--------------~---~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR 80 (296)
T 1aua_A 18 ALPGTPGNLDSAQEKALAELRKLLEDAG--------------F---IERLDDSTLLRFLRARKFDVQLAKEMFENCEKWR 80 (296)
T ss_dssp SCTTSTTTCCTTHHHHHHHHHHHHHHTT--------------C---CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHhcC--------------C---CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4567799999999999999999999874 1 2568899999999999999999999999999999
Q ss_pred HHhCCCCCcccC-CC-hhhhcc-ceeeeeccCCCCCcEEEEecCccCcchhhhhhcCCHHHHHHHHHHHHHHHHHHHHhh
Q 018953 135 KEFGADGIVEED-LG-FKELEG-VVAYMQGYDREGHPVCYNAYGVFRDKDMYERIFGDDEKLKKFLRWRVQVLERGINLL 211 (348)
Q Consensus 135 ~~~~~~~i~~~~-l~-~~~l~~-~~~~~~G~Dk~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~ 211 (348)
++++++++..+. .. ...+.. +..+++|+|++||||+|+++|++|+.++++. .+.+++++++++.+|.+++.+
T Consensus 81 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~-----~~~~~~~~~~~~~~E~~~~~~ 155 (296)
T 1aua_A 81 KDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKV-----TSEERMLKNLVWEYESVVQYR 155 (296)
T ss_dssp HHHTGGGHHHHCCCTTHHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTT-----CCHHHHHHHHHHHHHHHHHTH
T ss_pred HHcCcchhhhccccCcHHHHHHhCCceecccCCCCCEEEEEeeccCChHHhhcc-----CCHHHHHHHHHHHHHHHHHHH
Confidence 999887765321 11 123333 3347899999999999999999998876432 146788999999999877542
Q ss_pred c-----cCCCCcceEEEEEecCCCCchhHH---HHHHHHHHHHhhhchhhcceEEEEeCChhHHHHHHHHhhcCCccccc
Q 018953 212 H-----FKPGGVNSIIQVTDLKDMPKRELR---VASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKS 283 (348)
Q Consensus 212 ~-----~~~~~v~~~v~IiDl~g~s~~~l~---~~~k~~~~~lq~~yPerl~~i~ivN~P~~~~~iw~lvkpfL~~~t~~ 283 (348)
. .....++++++|+|++|++++|+. ..++.++.++|++||+|++++||||+|++|+++|+++||||+++|++
T Consensus 156 ~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~ 235 (296)
T 1aua_A 156 LPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVS 235 (296)
T ss_dssp HHHHHHHHTSCCCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHT
T ss_pred HHHHHHhcCCCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcc
Confidence 1 012357899999999999999885 57899999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCcHHHHhccCCCCCCCccCCCCCCCCCC
Q 018953 284 KFVISKEGNVAETLYKFVRPEDIPVQYGGLSRPSDL 319 (348)
Q Consensus 284 KI~~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~~~~ 319 (348)
||+|+++ ++.+.|.++|++++||++|||++++.+.
T Consensus 236 KI~~~~~-~~~~~L~~~i~~~~LP~~yGG~~~~~~~ 270 (296)
T 1aua_A 236 KIFILGS-SYQKELLKQIPAENLPVKFGGKSEVDES 270 (296)
T ss_dssp TEEECCS-CCHHHHTTTSCSSSSBGGGTSCBCCCGG
T ss_pred eEEEeCc-ccHHHHHhhCCHhhCcHHhCCCCCCCCC
Confidence 9999983 5688999999999999999999998763
No 4
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=1.8e-48 Score=365.32 Aligned_cols=258 Identities=17% Similarity=0.363 Sum_probs=193.7
Q ss_pred CCCCCCCCCCCCCccceeEeeecccccCCCCccccccccCCCCHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCC-
Q 018953 22 PPPEASPKPYTSNKKSFVASLMEAATLRSPSFKEDSYFVSQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGT- 100 (348)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~k~~~~~l~~l~~~e~~~l~~Lr~~l~~~~~~~~~~~~~~~~~p~l~~- 100 (348)
..+.+.|..|+.+. +|.......|+ +| |++.++.++++|++||+||++.+ ++++
T Consensus 24 ~~~~~~~~~~~~~~-~l~~~~~~~a~-------~e---L~E~~~~~~~~l~~LR~wi~~~p--------------~l~~~ 78 (316)
T 3hx3_A 24 LTTKDHGPVFGPCS-QLPRHTLQKAK-------DE---LNEREETREEAVRELQEMVQAQA--------------ASGEE 78 (316)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHHHHHH--------------TTTCH
T ss_pred hhhccCCccccCCC-CCCHHHHHHHH-------HH---hCCChHHHHHHHHHHHHHHHhCC--------------Ccccc
Confidence 66889999998887 77777777765 77 99999999999999999999985 2210
Q ss_pred --------CCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCC--CCCcccCCChhhhccce-eeeeccCCCCCcE
Q 018953 101 --------GDERADVILLKFLRARDFRVLDSFNMLEKCLAWRKEFGA--DGIVEEDLGFKELEGVV-AYMQGYDREGHPV 169 (348)
Q Consensus 101 --------~~~~~D~~LlRFLra~~~dv~~A~~~l~~~l~wR~~~~~--~~i~~~~l~~~~l~~~~-~~~~G~Dk~GrpV 169 (348)
.++.+|.+|+||||||+||+++|.++|+++++||++++. +++..+++. ..+..+. .+++|+|++||||
T Consensus 79 l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~~~~~~~~~~i~-~~l~~g~~~~l~g~Dk~GrpV 157 (316)
T 3hx3_A 79 LAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVR-CTIEAGYPGVLSSRDKYGRVV 157 (316)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGGGTTTCCHHHHH-HHHHTTSSEECSSCCTTSCEE
T ss_pred ccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCchhhcCCCHHHHH-HHHHcCCccccCCCCCCCCEE
Confidence 146899999999999999999999999999999999873 334333333 3344444 5778999999999
Q ss_pred EEEecCccCcchhhhhhcCCHHHHHHHHHHHHHHHHHHHHhhccCCCCcceEEEEEecCCCCchhHH----HHHHHHHHH
Q 018953 170 CYNAYGVFRDKDMYERIFGDDEKLKKFLRWRVQVLERGINLLHFKPGGVNSIIQVTDLKDMPKRELR----VASNQILSL 245 (348)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~~v~~~v~IiDl~g~s~~~l~----~~~k~~~~~ 245 (348)
+++++|++|+.+. +.++++++.++++|.++... ..+++|+++|+|++|++++|+. +.++.++.+
T Consensus 158 ii~r~g~~d~~~~---------~~~~~~r~~~~~lE~~l~~~---~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~ 225 (316)
T 3hx3_A 158 MLFNIENWQSQEI---------TFDEILQAYCFILEKLLENE---ETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDM 225 (316)
T ss_dssp EEEECTTCCTTTS---------CHHHHHHHHHHHHHHHTTSH---HHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHH
T ss_pred EEEecccCCCCCC---------CHHHHHHHHHHHHHHHHhcc---cCCcceEEEEEECCCCCHHHhccCChHHHHHHHHH
Confidence 9999999988753 36788999999999887532 3578999999999999999874 578999999
Q ss_pred HhhhchhhcceEEEEeCChhHHHHHHHHhhcCCccccccEEEecCCCcHHHHhccCCCCCCCccCCCCCCCCCC
Q 018953 246 FQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNVAETLYKFVRPEDIPVQYGGLSRPSDL 319 (348)
Q Consensus 246 lq~~yPerl~~i~ivN~P~~~~~iw~lvkpfL~~~t~~KI~~~~~~~~~~~L~~~i~~~~LP~~yGG~~~~~~~ 319 (348)
+|++||+|++++||||+|++|+++|+++||||+++|++||+|++ ++.+.|.++||+++||++|||++++++.
T Consensus 226 lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~--~~~~~L~~~I~~~~LP~eyGG~~~~~d~ 297 (316)
T 3hx3_A 226 LQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHG--DDLSGFYQEIDENILPSDFGGTLPKYDG 297 (316)
T ss_dssp HHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEE--TCCHHHHHHSCGGGSBGGGTSSBCCCCH
T ss_pred HHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeC--CCHHHHHhhCCHhhCcHhhCCCCCCcCh
Confidence 99999999999999999999999999999999999999999997 2357999999999999999999987653
No 5
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=3.6e-46 Score=340.97 Aligned_cols=227 Identities=23% Similarity=0.342 Sum_probs=187.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCC-
Q 018953 61 SQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKCLAWRKEFGA- 139 (348)
Q Consensus 61 ~~l~~~e~~~l~~Lr~~l~~~~~~~~~~~~~~~~~p~l~~~~~~~D~~LlRFLra~~~dv~~A~~~l~~~l~wR~~~~~- 139 (348)
++||+.|+++|++||+++++... +.. ....+|.+|+|||||++||+++|.++|+++++||++++.
T Consensus 2 ~~ls~~~~~~l~~lr~~l~~~~~------------~~~--~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i 67 (262)
T 1r5l_A 2 SHMSPLLQPGLAALRRRAREAGV------------PLA--PLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEI 67 (262)
T ss_dssp -------CTTHHHHHHHHHHHTC------------CCS--SSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHH
T ss_pred CCccHHHHHHHHHHHHHHHhCCc------------ccC--CCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHh
Confidence 57899999999999999998852 122 256799999999999999999999999999999999862
Q ss_pred -CCCcccCCChhhhccc-eeeeeccCCCCCcEEEEecCccCcchhhhhhcCCHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 018953 140 -DGIVEEDLGFKELEGV-VAYMQGYDREGHPVCYNAYGVFRDKDMYERIFGDDEKLKKFLRWRVQVLERGINLLHFKPGG 217 (348)
Q Consensus 140 -~~i~~~~l~~~~l~~~-~~~~~G~Dk~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~~ 217 (348)
.++..+++. ..+..+ ..+++|+|++||||+++++|++|++.+ +..+++++.++++|.+++.. ..+
T Consensus 68 ~~~~~~~~~~-~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~---------~~~~~~r~~~~~~E~~~~~~---~~~ 134 (262)
T 1r5l_A 68 SADLHPRSII-GLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVF---------TAYDVFRVSLITSELIVQEV---ETQ 134 (262)
T ss_dssp HSCCCGGGTH-HHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTS---------CHHHHHHHHHHHHHHHTTSH---HHH
T ss_pred hhcCChHHHH-HHHHcCCccCCCCcCCCCCEEEEEeccccCcccC---------CHHHHHHHHHHHHHHHHhCh---hhc
Confidence 233333343 344444 457889999999999999999988653 25678899999999876543 245
Q ss_pred cceEEEEEecCCCCchhHH----HHHHHHHHHHhhhchhhcceEEEEeCChhHHHHHHHHhhcCCccccccEEEecCCCc
Q 018953 218 VNSIIQVTDLKDMPKRELR----VASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNV 293 (348)
Q Consensus 218 v~~~v~IiDl~g~s~~~l~----~~~k~~~~~lq~~yPerl~~i~ivN~P~~~~~iw~lvkpfL~~~t~~KI~~~~~~~~ 293 (348)
+.|+++|+|++|++++|+. +.++.++.++|++||+|++++||||+|++|+++|+++||||+++|++||+|++ +++
T Consensus 135 ~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~-~~~ 213 (262)
T 1r5l_A 135 RNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHG-NNY 213 (262)
T ss_dssp HHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECC-SSC
T ss_pred ccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeC-CCc
Confidence 7899999999999999974 57899999999999999999999999999999999999999999999999997 356
Q ss_pred HHHHhccCCCCCCCccCCCCCCC
Q 018953 294 AETLYKFVRPEDIPVQYGGLSRP 316 (348)
Q Consensus 294 ~~~L~~~i~~~~LP~~yGG~~~~ 316 (348)
.+.|.++|+ ++||++|||++.+
T Consensus 214 ~~~L~~~i~-~~LP~~yGG~~~~ 235 (262)
T 1r5l_A 214 KQSLLQHFP-DILPLEYGGEEFS 235 (262)
T ss_dssp HHHHHHHST-TTSCGGGTCSSCC
T ss_pred HHHHHHHhh-hhCcHhhCCCCCC
Confidence 799999999 9999999999863
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.15 E-value=3.5e-11 Score=108.51 Aligned_cols=130 Identities=12% Similarity=0.131 Sum_probs=102.5
Q ss_pred eeeeeccCCCCCcEEEEecCccCcchhhhhhcCCHHHHHHHHHHHHHHHHHHHHhhccCCCCcceEEEEEecCCCCchhH
Q 018953 156 VAYMQGYDREGHPVCYNAYGVFRDKDMYERIFGDDEKLKKFLRWRVQVLERGINLLHFKPGGVNSIIQVTDLKDMPKREL 235 (348)
Q Consensus 156 ~~~~~G~Dk~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~~v~~~v~IiDl~g~s~~~l 235 (348)
+.|-.|.|++||||+++..++++...+ +.+.++.+++..++... -..+.+|+|++|++..+.
T Consensus 12 ify~~G~d~dGrpViv~~~~~l~~~~~---------D~e~Ll~~vl~tl~~~~---------~~~y~lV~d~T~~~~~n~ 73 (256)
T 3pg7_A 12 IFYQAGTSKAGNPIFYYVARRFKTGQI---------NGDLLIYHVLLTLKPYY---------AKPYEIVVDLTHTGPSNR 73 (256)
T ss_dssp SEEEEEECTTSCEEEEEEGGGCCBTTB---------CHHHHHHHHHHHHTTTT---------TSCEEEEEECTTCCGGGC
T ss_pred CEEEcCcCCCCCEEEEEEeecCCCCCC---------CHHHHHHHHHHHHHHhc---------CCCeEEEEECCCCCcccC
Confidence 346668999999999999999976542 35666666655555322 246889999999997654
Q ss_pred --HHHHHHHHHHHhhhchhhcceEEEEeCChhHHHHHHH-HhhcCCccccccEEEecCCCcHHHHhccCCCCCC
Q 018953 236 --RVASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSM-FSPFLTQRTKSKFVISKEGNVAETLYKFVRPEDI 306 (348)
Q Consensus 236 --~~~~k~~~~~lq~~yPerl~~i~ivN~P~~~~~iw~l-vkpfL~~~t~~KI~~~~~~~~~~~L~~~i~~~~L 306 (348)
.+.++.+..++-..|...++++||+|++++|+..|+. .++|.+.+..+|+++++ ..++|.++|+.++|
T Consensus 74 p~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~---sl~eL~~~i~~~~L 144 (256)
T 3pg7_A 74 FKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFID---CPGKLAEHIEHEQQ 144 (256)
T ss_dssp CCHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEES---STTGGGGTSCGGGC
T ss_pred CcHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEEC---CHHHHHhhcCHHHc
Confidence 3678889999999999999999999999999977665 46677778889999995 57889999976655
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.96 E-value=5.2e-10 Score=102.38 Aligned_cols=130 Identities=12% Similarity=0.116 Sum_probs=92.9
Q ss_pred eeeeeccCCCCCcEEEEecCccCcchhhhhhcCCHHHHHHHHHHHHHHHHHHHHhhccCCCCcceEEEEEecCCCCchhH
Q 018953 156 VAYMQGYDREGHPVCYNAYGVFRDKDMYERIFGDDEKLKKFLRWRVQVLERGINLLHFKPGGVNSIIQVTDLKDMPKREL 235 (348)
Q Consensus 156 ~~~~~G~Dk~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~~v~~~v~IiDl~g~s~~~l 235 (348)
+.|-.|.|++|+||+++..++++...+ +.+.++-+++..++... -..+.+|+|+++++..+-
T Consensus 31 ~f~~~g~d~dG~PViv~~~~~~~~~~~---------D~e~Lly~il~tl~~~~---------~~~y~lV~D~T~~~~~n~ 92 (290)
T 3peg_A 31 IFYQAGTSKAGNPIFYYVARRFKTGQI---------NGDLLIYHVLLTLKPYY---------AKPYEIVVDLTHTGPSNR 92 (290)
T ss_dssp TEEEEEECTTSCEEEEEEGGGCCBTTB---------CHHHHHHHHHHHHTTTT---------TSCEEEEEECTTCCGGGC
T ss_pred eEEEeccCCCCCEEEEEEeecCCccCC---------CHHHHHHHHHHHHHHhc---------CCCeEEEEEcCCCCccCC
Confidence 335558999999999999999986533 35555555555544322 247889999999997643
Q ss_pred --HHHHHHHHHHHhhhchhhcceEEEEeCChhHHHHH-HHHhhcCCccccccEEEecCCCcHHHHhccCCCCCC
Q 018953 236 --RVASNQILSLFQDNYPEMVARKIFINVPWYFSMLY-SMFSPFLTQRTKSKFVISKEGNVAETLYKFVRPEDI 306 (348)
Q Consensus 236 --~~~~k~~~~~lq~~yPerl~~i~ivN~P~~~~~iw-~lvkpfL~~~t~~KI~~~~~~~~~~~L~~~i~~~~L 306 (348)
.+.++.+..++...|...++++||+|++++|...+ ...+++.+.+..+|+.+++. ...|..+++.+++
T Consensus 93 p~~~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~---~~~L~~~i~~~~~ 163 (290)
T 3peg_A 93 FKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC---PGKLAEHIEHEQQ 163 (290)
T ss_dssp CCHHHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS---SCC----------
T ss_pred ChHHHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC---HHHHHhhCCHHHh
Confidence 46888899999999999999999999999998754 57788888899999999862 3448888876643
No 8
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.01 E-value=3.7 Score=28.24 Aligned_cols=45 Identities=7% Similarity=0.032 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCCCchHHHHHHHHHHcCCCHHHHHHHHH
Q 018953 61 SQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLE 128 (348)
Q Consensus 61 ~~l~~~e~~~l~~Lr~~l~~~~~~~~~~~~~~~~~p~l~~~~~~~D~~LlRFLra~~~dv~~A~~~l~ 128 (348)
..|+..++++|++|...-.- .+......||..++||++.|+..+-
T Consensus 12 ~~Ls~~~~e~i~qF~~ITg~-----------------------~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 12 RDLTQEQTEKLLQFQDLTGI-----------------------ESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp CCCCHHHHHHHHHHHHHHCC-----------------------SCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hhcChhHHHHHHHHHHHhCC-----------------------CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57888998888888776541 1355678999999999999988764
No 9
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.65 E-value=5.2 Score=26.95 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=34.8
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCCCchHHHHHHHHHHcCCCHHHHHHHHH
Q 018953 60 VSQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLE 128 (348)
Q Consensus 60 l~~l~~~e~~~l~~Lr~~l~~~~~~~~~~~~~~~~~p~l~~~~~~~D~~LlRFLra~~~dv~~A~~~l~ 128 (348)
+..|++.+++.|++|...-. .+......||.+.+||++.|+..+-
T Consensus 8 ~~~~s~~~~e~i~qF~~iTg------------------------~~~~~A~~~Le~~~WnLe~Av~~ff 52 (62)
T 2dal_A 8 GSAASSALKGLIQQFTTITG------------------------ASESVGKHMLEACNNNLEMAVTMFL 52 (62)
T ss_dssp CCSSCHHHHHHHHHHHHHTC------------------------CCHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred hhhcCccHHHHHHHHHHHhC------------------------CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56788888888888874321 2367789999999999999997763
No 10
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=78.38 E-value=10 Score=27.12 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCCCchHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018953 61 SQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKC 130 (348)
Q Consensus 61 ~~l~~~e~~~l~~Lr~~l~~~~~~~~~~~~~~~~~p~l~~~~~~~D~~LlRFLra~~~dv~~A~~~l~~~ 130 (348)
.+|++.++..|..=-+.|.... ++...|..|.+-....+||+++|+..+.+-
T Consensus 24 ~~Ls~~d~arL~SCLd~iR~Vl------------------GdsV~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 24 HQLSEIDQARLYSCLDHMREVL------------------GDAVPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHT------------------TTTSCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHH------------------cccCCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 3577777755544333343332 123458889999999999999999987653
No 11
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=72.40 E-value=5.7 Score=26.53 Aligned_cols=27 Identities=15% Similarity=0.078 Sum_probs=23.9
Q ss_pred CchHHHHHHHHHHcCCCHHHHHHHHHH
Q 018953 103 ERADVILLKFLRARDFRVLDSFNMLEK 129 (348)
Q Consensus 103 ~~~D~~LlRFLra~~~dv~~A~~~l~~ 129 (348)
..+...+..-|+++++|++.|+..|.+
T Consensus 22 ~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 22 NMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 457888999999999999999999865
No 12
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=62.53 E-value=35 Score=26.14 Aligned_cols=72 Identities=13% Similarity=0.033 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhccCCCC--cceEEEEEecCCCCchhHHHHHHHHHHHHhhhchhhcceEEEEeCChhHHHHHHHHhhcC
Q 018953 200 RVQVLERGINLLHFKPGG--VNSIIQVTDLKDMPKRELRVASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFL 277 (348)
Q Consensus 200 ~~~~lE~~~~~~~~~~~~--v~~~v~IiDl~g~s~~~l~~~~k~~~~~lq~~yPerl~~i~ivN~P~~~~~iw~lvkpfL 277 (348)
+.-.+|..+.. .+. +.-++.+-|+.|+++..++..++.-+ .|. ..+.++=||-.+.+...+-++.++|+
T Consensus 38 l~~~l~~~l~~----~~~~~i~ll~~~~~f~G~~~~a~~~d~k~~~----~h~-~~~~RiAvV~d~~W~~~~~~~~~~~~ 108 (126)
T 2q3l_A 38 MTPLLESALAG----IKTPEIVALIDITELDGLSLHAAWDDLKLGL----KHG-KEFKRVAIIGQGELQEWATRVANWFT 108 (126)
T ss_dssp HHHHHHHHTTT----CCSSCEEEEEEEEEEEEECHHHHHHHHHHHH----HHG-GGEEEEEEECCSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHh----CCCceEEEEEEecCCCCCCHHHHHHHHHhhh----hHH-hcCCEEEEEcChHHHHHHHHHHhhcc
Confidence 44566665532 234 56555666677778777766555222 333 77899999999999999999999997
Q ss_pred Ccc
Q 018953 278 TQR 280 (348)
Q Consensus 278 ~~~ 280 (348)
+..
T Consensus 109 ~~e 111 (126)
T 2q3l_A 109 PGE 111 (126)
T ss_dssp SSE
T ss_pred CCc
Confidence 764
No 13
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=62.48 E-value=21 Score=23.98 Aligned_cols=46 Identities=11% Similarity=0.181 Sum_probs=36.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCCCchHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018953 60 VSQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKC 130 (348)
Q Consensus 60 l~~l~~~e~~~l~~Lr~~l~~~~~~~~~~~~~~~~~p~l~~~~~~~D~~LlRFLra~~~dv~~A~~~l~~~ 130 (348)
|..|++.|.++|+.|- ..+ .++....|=|++.+.|+++|+.-|-.+
T Consensus 12 l~~ls~se~e~V~~Lv----sMG---------------------Fs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 12 LQMLSPSERQCVETVV----NMG---------------------YSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHTCCHHHHHHHHHHH----HHH---------------------CCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHhhCcchHHHHHHHH----HcC---------------------CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 6788999988877654 443 467888999999999999998877544
No 14
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.54 E-value=16 Score=25.00 Aligned_cols=28 Identities=21% Similarity=0.064 Sum_probs=23.9
Q ss_pred CchHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018953 103 ERADVILLKFLRARDFRVLDSFNMLEKC 130 (348)
Q Consensus 103 ~~~D~~LlRFLra~~~dv~~A~~~l~~~ 130 (348)
..+...+..-|+++++|++.|++.|.+.
T Consensus 31 ~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 31 NMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp SSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3468889999999999999999998654
No 15
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=59.55 E-value=28 Score=22.35 Aligned_cols=25 Identities=16% Similarity=-0.044 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHH
Q 018953 105 ADVILLKFLRARDFRVLDSFNMLEK 129 (348)
Q Consensus 105 ~D~~LlRFLra~~~dv~~A~~~l~~ 129 (348)
+....++-|+++++|+++|++.|..
T Consensus 25 ~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 25 NREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6677799999999999999998864
No 16
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=59.09 E-value=11 Score=22.40 Aligned_cols=23 Identities=13% Similarity=-0.037 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHH
Q 018953 105 ADVILLKFLRARDFRVLDSFNML 127 (348)
Q Consensus 105 ~D~~LlRFLra~~~dv~~A~~~l 127 (348)
+.....+.|+++++|++.|...|
T Consensus 17 ~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 17 DPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 35556889999999999998765
No 17
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=59.00 E-value=23 Score=22.12 Aligned_cols=24 Identities=17% Similarity=-0.058 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHH
Q 018953 105 ADVILLKFLRARDFRVLDSFNMLE 128 (348)
Q Consensus 105 ~D~~LlRFLra~~~dv~~A~~~l~ 128 (348)
++...++-|++.++|+++|++.|.
T Consensus 21 d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 21 DFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHH
Confidence 455678999999999999998874
No 18
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=57.65 E-value=22 Score=23.53 Aligned_cols=25 Identities=16% Similarity=-0.045 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHH
Q 018953 105 ADVILLKFLRARDFRVLDSFNMLEK 129 (348)
Q Consensus 105 ~D~~LlRFLra~~~dv~~A~~~l~~ 129 (348)
++...++-|++.++|+++|++.|..
T Consensus 31 d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 31 DFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4556789999999999999998864
No 19
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=53.42 E-value=46 Score=21.99 Aligned_cols=28 Identities=11% Similarity=-0.044 Sum_probs=23.1
Q ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 018953 104 RADVILLKFLRARDFRVLDSFNMLEKCL 131 (348)
Q Consensus 104 ~~D~~LlRFLra~~~dv~~A~~~l~~~l 131 (348)
..-.+-.++|...+||.++|...+.+..
T Consensus 20 mn~~~s~~cL~~~~Wd~~~A~~~F~~l~ 47 (59)
T 1oai_A 20 MNLEWSQKCLQDNNWDYTRSAQAFTHLK 47 (59)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3467789999999999999999876543
No 20
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=52.93 E-value=36 Score=23.23 Aligned_cols=27 Identities=19% Similarity=-0.041 Sum_probs=22.0
Q ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018953 104 RADVILLKFLRARDFRVLDSFNMLEKC 130 (348)
Q Consensus 104 ~~D~~LlRFLra~~~dv~~A~~~l~~~ 130 (348)
.++..-++-|++.++||++|++.|...
T Consensus 32 ~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 32 VNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 345566999999999999999988653
No 21
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=52.88 E-value=17 Score=23.65 Aligned_cols=26 Identities=19% Similarity=0.016 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018953 105 ADVILLKFLRARDFRVLDSFNMLEKC 130 (348)
Q Consensus 105 ~D~~LlRFLra~~~dv~~A~~~l~~~ 130 (348)
++..-++-|++.++|+++|++.|...
T Consensus 23 d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 23 NREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34556899999999999999988754
No 22
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=51.15 E-value=13 Score=22.86 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHH
Q 018953 105 ADVILLKFLRARDFRVLDSFNMLE 128 (348)
Q Consensus 105 ~D~~LlRFLra~~~dv~~A~~~l~ 128 (348)
+......||.+++||++.|+..+-
T Consensus 19 ~~~~A~~~L~~~~wdle~Ai~~ff 42 (46)
T 1v92_A 19 EEDRARFFLESAGWDLQIALASFY 42 (46)
T ss_dssp CHHHHHHHHHHTTSCSHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 467789999999999999987753
No 23
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=51.12 E-value=48 Score=21.78 Aligned_cols=26 Identities=0% Similarity=-0.033 Sum_probs=22.7
Q ss_pred chHHHHHHHHHHcCCCHHHHHHHHHH
Q 018953 104 RADVILLKFLRARDFRVLDSFNMLEK 129 (348)
Q Consensus 104 ~~D~~LlRFLra~~~dv~~A~~~l~~ 129 (348)
..-.+-.++|...+||.++|...+.+
T Consensus 19 Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 19 LNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp SCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34677899999999999999999876
No 24
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=49.53 E-value=48 Score=22.88 Aligned_cols=27 Identities=11% Similarity=0.147 Sum_probs=24.1
Q ss_pred CchHHHHHHHHHHcCCCHHHHHHHHHH
Q 018953 103 ERADVILLKFLRARDFRVLDSFNMLEK 129 (348)
Q Consensus 103 ~~~D~~LlRFLra~~~dv~~A~~~l~~ 129 (348)
+..+.|+.+.|..++.|++++...|-+
T Consensus 26 dLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 26 DLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 457999999999999999999998765
No 25
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=48.75 E-value=44 Score=22.37 Aligned_cols=27 Identities=11% Similarity=-0.012 Sum_probs=21.3
Q ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018953 104 RADVILLKFLRARDFRVLDSFNMLEKC 130 (348)
Q Consensus 104 ~~D~~LlRFLra~~~dv~~A~~~l~~~ 130 (348)
++.....+=|+++++|+++|++.|..+
T Consensus 21 F~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 21 FSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 345567889999999999998877654
No 26
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=44.86 E-value=23 Score=22.81 Aligned_cols=26 Identities=8% Similarity=0.331 Sum_probs=22.1
Q ss_pred CchHHHHHHHHHHcCCCHHHHHHHHH
Q 018953 103 ERADVILLKFLRARDFRVLDSFNMLE 128 (348)
Q Consensus 103 ~~~D~~LlRFLra~~~dv~~A~~~l~ 128 (348)
..+-.+|-|.|.+.++|+.+|+..|.
T Consensus 23 ~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 23 SDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp CCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred CccccHHHHHHHHccCCHHHHHHHhh
Confidence 34557899999999999999998875
No 27
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=44.72 E-value=24 Score=29.03 Aligned_cols=65 Identities=8% Similarity=0.023 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhC
Q 018953 61 SQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKCLAWRKEFG 138 (348)
Q Consensus 61 ~~l~~~e~~~l~~Lr~~l~~~~~~~~~~~~~~~~~p~l~~~~~~~D~~LlRFLra~~~dv~~A~~~l~~~l~wR~~~~ 138 (348)
-+||++|+++++++++.....-. +.+..+ .....-|...+.+-++|..++.+..++.-+.|.+..
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~---~Lr~ql----------~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTS---ALRQQL----------ISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLD 130 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHH---HHHHHH----------HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHH---HHHHHH----------HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999887776531 000000 122344566677889999999999988888887644
No 28
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=44.23 E-value=22 Score=24.80 Aligned_cols=25 Identities=24% Similarity=0.103 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHH
Q 018953 105 ADVILLKFLRARDFRVLDSFNMLEK 129 (348)
Q Consensus 105 ~D~~LlRFLra~~~dv~~A~~~l~~ 129 (348)
++...++-|++.++|+++|++.|..
T Consensus 43 dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 43 NRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred cHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4566799999999999999998764
No 29
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=43.91 E-value=23 Score=22.75 Aligned_cols=24 Identities=17% Similarity=-0.031 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHH
Q 018953 105 ADVILLKFLRARDFRVLDSFNMLE 128 (348)
Q Consensus 105 ~D~~LlRFLra~~~dv~~A~~~l~ 128 (348)
+....++-|++.++|+++|++.|.
T Consensus 26 ~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 26 NREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp CHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHH
Confidence 566778999999999999998874
No 30
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=43.65 E-value=29 Score=22.13 Aligned_cols=27 Identities=15% Similarity=-0.016 Sum_probs=22.9
Q ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018953 104 RADVILLKFLRARDFRVLDSFNMLEKC 130 (348)
Q Consensus 104 ~~D~~LlRFLra~~~dv~~A~~~l~~~ 130 (348)
.+-..+-+-|+++++|+++|+..|.+.
T Consensus 18 ~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 18 ISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp SCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 456778889999999999999998654
No 31
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.24 E-value=22 Score=22.44 Aligned_cols=26 Identities=15% Similarity=-0.010 Sum_probs=21.7
Q ss_pred chHHHHHHHHHHcCCCHHHHHHHHHH
Q 018953 104 RADVILLKFLRARDFRVLDSFNMLEK 129 (348)
Q Consensus 104 ~~D~~LlRFLra~~~dv~~A~~~l~~ 129 (348)
.+.....+=|+++++|+++|.+.|..
T Consensus 20 F~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 20 YERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp CCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45677889999999999999988754
No 32
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=39.69 E-value=50 Score=22.87 Aligned_cols=26 Identities=15% Similarity=-0.014 Sum_probs=21.7
Q ss_pred chHHHHHHHHHHcCCCHHHHHHHHHH
Q 018953 104 RADVILLKFLRARDFRVLDSFNMLEK 129 (348)
Q Consensus 104 ~~D~~LlRFLra~~~dv~~A~~~l~~ 129 (348)
++.....+=|+++++|+++|++.|..
T Consensus 41 F~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 41 FDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 45677888999999999999988754
No 33
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=39.63 E-value=67 Score=22.87 Aligned_cols=27 Identities=19% Similarity=-0.033 Sum_probs=22.7
Q ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018953 104 RADVILLKFLRARDFRVLDSFNMLEKC 130 (348)
Q Consensus 104 ~~D~~LlRFLra~~~dv~~A~~~l~~~ 130 (348)
++.....+-|++.++|+++|++.|..+
T Consensus 41 F~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 41 FDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 456778899999999999999888765
No 34
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=39.34 E-value=31 Score=20.91 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHH
Q 018953 105 ADVILLKFLRARDFRVLDSFNMLEK 129 (348)
Q Consensus 105 ~D~~LlRFLra~~~dv~~A~~~l~~ 129 (348)
+.....+=|+++++|+++|...|..
T Consensus 17 ~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 17 TEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 4566788899999999999987753
No 35
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=37.15 E-value=32 Score=25.91 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHH
Q 018953 105 ADVILLKFLRARDFRVLDSFNMLEK 129 (348)
Q Consensus 105 ~D~~LlRFLra~~~dv~~A~~~l~~ 129 (348)
++...++-|++.++|+++|++.|.+
T Consensus 80 d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 80 DDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp CHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4567899999999999999998864
No 36
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=36.64 E-value=82 Score=20.43 Aligned_cols=26 Identities=15% Similarity=0.347 Sum_probs=22.2
Q ss_pred chHHHHHHHHHHcCCCHHHHHHHHHH
Q 018953 104 RADVILLKFLRARDFRVLDSFNMLEK 129 (348)
Q Consensus 104 ~~D~~LlRFLra~~~dv~~A~~~l~~ 129 (348)
.|...=.+-|+..+||+++|+..|.+
T Consensus 22 ~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 22 CDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp CCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46677789999999999999988764
No 37
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.24 E-value=82 Score=20.83 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018953 105 ADVILLKFLRARDFRVLDSFNMLEKC 130 (348)
Q Consensus 105 ~D~~LlRFLra~~~dv~~A~~~l~~~ 130 (348)
+.....+=|+++++|+++|++.|..+
T Consensus 22 ~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 22 SRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp CHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 45667888999999999998888765
No 38
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.05 E-value=33 Score=23.22 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHH
Q 018953 105 ADVILLKFLRARDFRVLDSFNML 127 (348)
Q Consensus 105 ~D~~LlRFLra~~~dv~~A~~~l 127 (348)
++.....||.+.+||++.|+..+
T Consensus 31 ~~~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 31 AADQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 46668999999999999998775
No 39
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=35.33 E-value=76 Score=25.89 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=34.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCCCchHHHHHHHHHHcCCCHHHHHHHHH
Q 018953 60 VSQLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLE 128 (348)
Q Consensus 60 l~~l~~~e~~~l~~Lr~~l~~~~~~~~~~~~~~~~~p~l~~~~~~~D~~LlRFLra~~~dv~~A~~~l~ 128 (348)
...+|++++++|++|.+ .+ .+....++-|.+|++|++.|...|-
T Consensus 123 ~i~~tpee~eaI~rL~~----mG---------------------F~r~~viqA~~ac~knee~Aan~L~ 166 (171)
T 2qsf_X 123 QVDYTPEDDQAISRLCE----LG---------------------FERDLVIQVYFACDKNEEAAANILF 166 (171)
T ss_dssp CCCCCHHHHHHHHHHHT----TT---------------------CCHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred cCCCCccHHHHHHHHHH----cC---------------------CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 46889999999866553 32 4567778899999999999988774
No 40
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=34.76 E-value=31 Score=21.51 Aligned_cols=20 Identities=10% Similarity=0.232 Sum_probs=17.2
Q ss_pred HHHHHHHHHcCCCHHHHHHH
Q 018953 107 VILLKFLRARDFRVLDSFNM 126 (348)
Q Consensus 107 ~~LlRFLra~~~dv~~A~~~ 126 (348)
.....||-+++||++.|+..
T Consensus 22 ~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 22 DEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHcCCcHHHHHHH
Confidence 66788999999999999754
No 41
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=31.86 E-value=1.6e+02 Score=23.14 Aligned_cols=59 Identities=10% Similarity=0.122 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 018953 62 QLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKCLAWRKE 136 (348)
Q Consensus 62 ~l~~~e~~~l~~Lr~~l~~~~~~~~~~~~~~~~~p~l~~~~~~~D~~LlRFLra~~~dv~~A~~~l~~~l~wR~~ 136 (348)
+||++|++.|.+|++.-...... . ......-+...+.+-+||-.++.+.+.+..+-+.+
T Consensus 45 ~LTdeQkqqir~L~~~~r~~~~~-------------~---~~~~r~~l~~Li~ad~fDeaa~ral~~~~~~~~~e 103 (145)
T 3itf_A 45 SLTEHQRQQMRDLMQQARHEQPP-------------V---NVSELETMHRLVTAENFDENAVRAQAEKMANEQIA 103 (145)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCC-------------C---CHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhh-------------c---cHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence 58999999999999987776420 0 11223446667778899998888888776655544
No 42
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=29.96 E-value=88 Score=21.49 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHH
Q 018953 105 ADVILLKFLRARDFRVLDSFNMLEK 129 (348)
Q Consensus 105 ~D~~LlRFLra~~~dv~~A~~~l~~ 129 (348)
+.....+=||++++|+++|++.|..
T Consensus 42 ~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 42 AEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4666788899999999999887754
No 43
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.66 E-value=69 Score=22.04 Aligned_cols=40 Identities=10% Similarity=0.259 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccccccccCCCCCCCchHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018953 68 KKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKC 130 (348)
Q Consensus 68 ~~~l~~Lr~~l~~~~~~~~~~~~~~~~~p~l~~~~~~~D~~LlRFLra~~~dv~~A~~~l~~~ 130 (348)
-+.+.+||++..+.+ |...-.+++..+.|.+.++.+|.+-
T Consensus 11 ~qvfheLkQrFPEvP-----------------------d~VVsqc~~qN~~Nl~aC~~~L~qE 50 (75)
T 2dae_A 11 FQVLHDLRQKFPEVP-----------------------EVVVSRCMLQNNNNLDACCAVLSQE 50 (75)
T ss_dssp HHHHHHHHHHSSSSC-----------------------HHHHHHHHTTTTSCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCc-----------------------HHHHHHHHHHhccCHHHHHHHHHHh
Confidence 456777777765542 7888999999999999999998754
No 44
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=28.45 E-value=1.2e+02 Score=22.70 Aligned_cols=58 Identities=16% Similarity=0.217 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCCCccccccccCCCCCCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 018953 62 QLKSSEKKALQELKNRLADSHNGSGENECSMWGIPLLGTGDERADVILLKFLRARDFRVLDSFNMLEKCLAWRK 135 (348)
Q Consensus 62 ~l~~~e~~~l~~Lr~~l~~~~~~~~~~~~~~~~~p~l~~~~~~~D~~LlRFLra~~~dv~~A~~~l~~~l~wR~ 135 (348)
+||++|+..|..|++.-...... + ......-+...+.+-+||-.++...+.+..+-..
T Consensus 17 ~LTd~Qk~qir~L~~~~r~~~~~-----------~-----~~~~r~~m~~Li~ad~FDEaaar~l~~~~~~~~~ 74 (108)
T 3o39_A 17 NLTDAQKQQIREIMKGQRDQMKR-----------P-----PLEERRAMHDIIASDTFDKAKAEAQIAKMEEQRK 74 (108)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCC-----------C-----CHHHHHHHHHHHSSSSCCHHHHHHHHHHTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhccc-----------c-----cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 79999999999999887766410 1 1112345667778889998888877765554443
No 45
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=27.99 E-value=89 Score=20.17 Aligned_cols=27 Identities=15% Similarity=-0.026 Sum_probs=23.1
Q ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018953 104 RADVILLKFLRARDFRVLDSFNMLEKC 130 (348)
Q Consensus 104 ~~D~~LlRFLra~~~dv~~A~~~l~~~ 130 (348)
.+..-..|=|...++|++.|...|+.+
T Consensus 21 F~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 21 YSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 456778999999999999999998865
No 46
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=26.77 E-value=98 Score=19.89 Aligned_cols=27 Identities=15% Similarity=-0.041 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018953 104 RADVILLKFLRARDFRVLDSFNMLEKC 130 (348)
Q Consensus 104 ~~D~~LlRFLra~~~dv~~A~~~l~~~ 130 (348)
.+..-.++=|+..++|++-|...|.++
T Consensus 23 Fsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 23 YAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 567778999999999999999998865
No 47
>3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DHAM; mixed alpha beta structure, glycerol metabolism; 1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C*
Probab=26.19 E-value=82 Score=24.32 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=26.0
Q ss_pred ceEEEEEecCCCCchhHHHHHHHHHHHHhhhchhhcceEEEEeCChhHHHHHHHH
Q 018953 219 NSIIQVTDLKDMPKRELRVASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMF 273 (348)
Q Consensus 219 ~~~v~IiDl~g~s~~~l~~~~k~~~~~lq~~yPerl~~i~ivN~P~~~~~iw~lv 273 (348)
++++++.|+ |-+..+.. +.+.. .. .++.++|+|.+..++-..+
T Consensus 59 dgVlvltDL-Ggsp~N~~------~al~~-~~----~~v~viNlPmvega~~aa~ 101 (131)
T 3ct6_A 59 DNLLTFFDL-GSARMNLD------LVSEM-TD----KELTIFNVPLIEGAYTASA 101 (131)
T ss_dssp SEEEEEESS-GGGHHHHH------HHHHT-CS----SEEEECCSCHHHHHHHHHH
T ss_pred CCEEEEEeC-CCChHHHH------HHHHh-cC----CCEEEEEhhHHHHHHHHHH
Confidence 699999999 54432211 11111 11 3888889999976665443
No 48
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.72 E-value=1.6e+02 Score=20.82 Aligned_cols=26 Identities=15% Similarity=0.118 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHH
Q 018953 105 ADVILLKFLRARDFRVLDSFNMLEKC 130 (348)
Q Consensus 105 ~D~~LlRFLra~~~dv~~A~~~l~~~ 130 (348)
+.....+=|+++++|++.|.+.|..+
T Consensus 42 ~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 42 PENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 45667888999999999998887654
No 49
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=22.42 E-value=54 Score=16.55 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=10.5
Q ss_pred chHHHHHHHHHHcC
Q 018953 104 RADVILLKFLRARD 117 (348)
Q Consensus 104 ~~D~~LlRFLra~~ 117 (348)
..|..|||||...+
T Consensus 3 ~kdhqllrylldkd 16 (21)
T 3dct_B 3 SKDHQLLRYLLDKD 16 (26)
T ss_pred hhHHHHHHHHHccc
Confidence 35788999997654
No 50
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=21.02 E-value=1.1e+02 Score=20.28 Aligned_cols=27 Identities=11% Similarity=-0.066 Sum_probs=20.3
Q ss_pred chHHHHHHHHHHc-CCCHHHHHHHHHHH
Q 018953 104 RADVILLKFLRAR-DFRVLDSFNMLEKC 130 (348)
Q Consensus 104 ~~D~~LlRFLra~-~~dv~~A~~~l~~~ 130 (348)
.+.....+=|+++ ++|++.|++.|..+
T Consensus 21 F~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 21 FPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp CCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 3466678888888 68999888777654
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=20.80 E-value=1.5e+02 Score=26.96 Aligned_cols=26 Identities=8% Similarity=0.055 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHH
Q 018953 107 VILLKFLRARDF-RVLDSFNMLEKCLA 132 (348)
Q Consensus 107 ~~LlRFLra~~~-dv~~A~~~l~~~l~ 132 (348)
.+.+..+..... |.++|.+.+++.++
T Consensus 134 ~~~~g~~l~~~g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 134 WHFRRVLLKSLQKDLHEEMNYITAIIE 160 (382)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 334444444555 49999998887765
No 52
>3b48_A Uncharacterized protein; enterococcus faecalis V583, structural genomics, PSI-2, PROT structure initiative; 2.21A {Enterococcus faecalis} SCOP: c.54.1.2
Probab=20.72 E-value=1.4e+02 Score=22.91 Aligned_cols=44 Identities=7% Similarity=0.151 Sum_probs=24.5
Q ss_pred ceEEEEEecCCCCchhHHHHHHHHHHHHhhhchhhcceEEEEeCChhHHHHH
Q 018953 219 NSIIQVTDLKDMPKRELRVASNQILSLFQDNYPEMVARKIFINVPWYFSMLY 270 (348)
Q Consensus 219 ~~~v~IiDl~g~s~~~l~~~~k~~~~~lq~~yPerl~~i~ivN~P~~~~~iw 270 (348)
++++++.|+ |-+..+.. ..+.++.. +.-.++.++|.|.+..++-
T Consensus 65 dgVlvltDL-Ggsp~N~~----~~~~~~~~---~~~~~v~vvNlPmv~~~l~ 108 (135)
T 3b48_A 65 REFLIFADL-GSAVLSSE----LAFDMLEE---DQQKHYHLVDAPLVEGAFA 108 (135)
T ss_dssp CEEEEEECS-HHHHHHHH----HHHHHSCH---HHHTTEEECCSCHHHHHHH
T ss_pred CCEEEEEeC-CCChhHHH----HHHHHhcc---cccCCEEEEEHHHHHHHHH
Confidence 699999999 53322211 11112221 2234678889997755544
Done!