Query 018954
Match_columns 348
No_of_seqs 26 out of 28
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 05:28:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10186 Atg14: UV radiation r 96.6 0.22 4.7E-06 45.5 16.8 80 150-229 24-108 (302)
2 PRK11637 AmiB activator; Provi 96.6 0.11 2.5E-06 51.4 16.1 54 207-260 77-130 (428)
3 TIGR02169 SMC_prok_A chromosom 96.0 0.37 8.1E-06 51.5 17.3 8 79-86 649-656 (1164)
4 PF10174 Cast: RIM-binding pro 96.0 0.18 3.9E-06 55.1 15.0 110 158-267 250-363 (775)
5 PRK09039 hypothetical protein; 95.9 0.42 9E-06 47.1 15.7 85 183-267 115-204 (343)
6 TIGR02169 SMC_prok_A chromosom 95.8 0.51 1.1E-05 50.5 17.2 33 228-260 884-916 (1164)
7 PRK11637 AmiB activator; Provi 95.8 0.14 2.9E-06 50.9 12.2 80 151-230 45-128 (428)
8 PF13870 DUF4201: Domain of un 95.6 1.6 3.4E-05 38.6 17.4 119 149-267 9-132 (177)
9 PHA02562 46 endonuclease subun 95.5 0.39 8.4E-06 48.1 14.3 101 152-252 298-398 (562)
10 PF15619 Lebercilin: Ciliary p 95.5 0.81 1.7E-05 42.2 15.0 103 152-264 74-188 (194)
11 TIGR02168 SMC_prok_B chromosom 95.2 1.2 2.5E-05 47.5 17.1 41 221-261 889-929 (1179)
12 PRK03918 chromosome segregatio 95.1 4.4 9.6E-05 43.1 21.1 45 223-267 388-432 (880)
13 PRK03918 chromosome segregatio 95.0 1.4 3E-05 46.8 17.2 111 153-263 169-282 (880)
14 PRK09039 hypothetical protein; 95.0 2.9 6.3E-05 41.3 18.2 46 185-237 138-183 (343)
15 PF00261 Tropomyosin: Tropomyo 95.0 2.2 4.7E-05 39.6 16.5 84 184-267 85-168 (237)
16 cd07664 BAR_SNX2 The Bin/Amphi 95.0 1.7 3.7E-05 41.1 15.9 119 150-270 26-189 (234)
17 KOG0243 Kinesin-like protein [ 94.9 1.2 2.5E-05 50.4 16.7 213 50-265 317-557 (1041)
18 PF00038 Filament: Intermediat 94.9 1.5 3.3E-05 41.1 15.3 113 150-265 184-308 (312)
19 KOG0250 DNA repair protein RAD 94.8 1.1 2.5E-05 50.6 16.4 118 150-267 285-456 (1074)
20 KOG0996 Structural maintenance 94.8 0.46 1E-05 54.1 13.3 110 150-263 855-965 (1293)
21 TIGR01843 type_I_hlyD type I s 94.7 2.3 4.9E-05 40.6 16.1 25 237-261 200-224 (423)
22 PHA02562 46 endonuclease subun 94.6 1.1 2.3E-05 45.0 14.3 74 188-261 327-400 (562)
23 PF07888 CALCOCO1: Calcium bin 94.5 1.6 3.4E-05 46.5 15.8 82 158-242 141-236 (546)
24 PRK02224 chromosome segregatio 94.5 1.2 2.7E-05 47.4 15.3 42 154-195 181-224 (880)
25 PF12718 Tropomyosin_1: Tropom 94.5 1.7 3.7E-05 38.1 13.7 66 184-249 73-138 (143)
26 PF13851 GAS: Growth-arrest sp 94.4 4 8.7E-05 37.6 17.4 113 149-265 23-140 (201)
27 PF08317 Spc7: Spc7 kinetochor 94.3 2.9 6.4E-05 40.6 16.2 60 206-265 210-269 (325)
28 TIGR01843 type_I_hlyD type I s 94.2 1.7 3.6E-05 41.5 14.0 17 247-263 246-262 (423)
29 smart00787 Spc7 Spc7 kinetocho 94.1 2.1 4.6E-05 42.1 14.9 83 183-265 178-264 (312)
30 PF06818 Fez1: Fez1; InterPro 94.1 1.2 2.7E-05 41.9 12.6 96 154-266 11-106 (202)
31 COG1579 Zn-ribbon protein, pos 94.0 4.4 9.5E-05 39.0 16.4 105 150-257 28-141 (239)
32 KOG0933 Structural maintenance 93.9 2.2 4.8E-05 48.4 16.1 33 150-182 738-770 (1174)
33 PRK02224 chromosome segregatio 93.8 2.1 4.5E-05 45.7 15.3 15 304-318 432-446 (880)
34 PF10186 Atg14: UV radiation r 93.8 5.3 0.00011 36.5 20.5 108 150-257 31-150 (302)
35 cd07665 BAR_SNX1 The Bin/Amphi 93.7 2.7 5.9E-05 40.0 14.4 84 184-269 83-188 (234)
36 PF05701 WEMBL: Weak chloropla 93.3 5.1 0.00011 41.6 16.8 109 153-261 281-407 (522)
37 PF10146 zf-C4H2: Zinc finger- 93.1 4.8 0.00011 38.2 14.9 101 155-262 3-103 (230)
38 PF10018 Med4: Vitamin-D-recep 93.0 1.9 4.2E-05 38.9 11.7 96 167-274 5-101 (188)
39 PF05701 WEMBL: Weak chloropla 93.0 5.6 0.00012 41.3 16.4 58 206-263 275-332 (522)
40 KOG0980 Actin-binding protein 93.0 3.8 8.2E-05 46.0 15.8 52 216-267 463-514 (980)
41 TIGR00606 rad50 rad50. This fa 92.8 2.1 4.6E-05 48.6 14.2 71 153-224 799-879 (1311)
42 KOG0161 Myosin class II heavy 92.7 3.4 7.4E-05 49.6 16.0 80 184-263 908-987 (1930)
43 PF07888 CALCOCO1: Calcium bin 92.7 6.3 0.00014 42.1 16.5 28 86-114 80-108 (546)
44 COG1196 Smc Chromosome segrega 92.7 4.7 0.0001 45.4 16.5 10 309-318 530-539 (1163)
45 COG1196 Smc Chromosome segrega 92.6 5 0.00011 45.2 16.6 73 184-256 828-900 (1163)
46 COG3883 Uncharacterized protei 92.3 8.9 0.00019 37.6 15.9 108 153-263 52-202 (265)
47 PF14915 CCDC144C: CCDC144C pr 92.2 10 0.00022 38.0 16.4 82 184-265 137-239 (305)
48 KOG0161 Myosin class II heavy 92.2 4.8 0.0001 48.4 16.4 143 158-323 990-1143(1930)
49 PF08317 Spc7: Spc7 kinetochor 92.2 9.1 0.0002 37.2 15.9 55 184-238 209-263 (325)
50 PF08614 ATG16: Autophagy prot 92.1 1.2 2.7E-05 40.1 9.2 50 184-233 123-172 (194)
51 PF00261 Tropomyosin: Tropomyo 92.0 2.4 5.2E-05 39.4 11.2 63 152-214 7-87 (237)
52 PF13851 GAS: Growth-arrest sp 91.9 10 0.00022 35.0 16.2 102 150-261 59-171 (201)
53 TIGR00606 rad50 rad50. This fa 91.6 4.9 0.00011 45.8 15.3 44 220-263 823-866 (1311)
54 PRK01156 chromosome segregatio 91.6 21 0.00046 38.6 19.3 73 178-251 675-747 (895)
55 PF09738 DUF2051: Double stran 91.6 0.93 2E-05 44.6 8.5 109 154-267 120-246 (302)
56 PF14915 CCDC144C: CCDC144C pr 91.3 11 0.00023 37.9 15.4 122 149-270 122-265 (305)
57 PF08614 ATG16: Autophagy prot 91.2 1.2 2.6E-05 40.1 8.3 97 154-267 75-171 (194)
58 KOG0977 Nuclear envelope prote 91.1 3.3 7.2E-05 44.1 12.5 31 152-182 112-142 (546)
59 TIGR01005 eps_transp_fam exopo 91.0 4.1 9E-05 43.2 13.1 83 184-266 316-402 (754)
60 PRK01156 chromosome segregatio 91.0 11 0.00025 40.6 16.6 18 239-256 701-718 (895)
61 TIGR03007 pepcterm_ChnLen poly 90.8 7.4 0.00016 39.0 14.1 10 65-74 81-90 (498)
62 KOG4673 Transcription factor T 90.8 7.1 0.00015 43.3 14.7 114 153-267 423-557 (961)
63 PF04156 IncA: IncA protein; 90.8 11 0.00024 33.2 15.7 16 223-238 155-170 (191)
64 PF09726 Macoilin: Transmembra 90.6 27 0.00059 38.1 19.0 35 303-339 585-621 (697)
65 PF15070 GOLGA2L5: Putative go 90.2 16 0.00035 39.3 16.6 85 150-234 84-182 (617)
66 TIGR03007 pepcterm_ChnLen poly 89.9 7.3 0.00016 39.0 13.2 60 156-215 164-235 (498)
67 PF10174 Cast: RIM-binding pro 89.6 17 0.00036 40.3 16.5 114 154-267 281-405 (775)
68 KOG0933 Structural maintenance 89.5 15 0.00034 42.1 16.3 115 151-265 675-840 (1174)
69 PF06818 Fez1: Fez1; InterPro 89.2 4.4 9.6E-05 38.3 10.4 86 182-267 8-93 (202)
70 PF04849 HAP1_N: HAP1 N-termin 89.1 2.9 6.3E-05 41.6 9.6 85 154-239 207-303 (306)
71 smart00787 Spc7 Spc7 kinetocho 89.1 25 0.00054 34.8 16.1 114 150-266 158-283 (312)
72 PF11932 DUF3450: Protein of u 88.7 20 0.00044 33.4 14.9 107 158-267 40-159 (251)
73 PF04156 IncA: IncA protein; 88.7 16 0.00035 32.1 13.0 106 154-262 82-187 (191)
74 TIGR01005 eps_transp_fam exopo 88.5 13 0.00028 39.6 14.4 60 155-214 196-267 (754)
75 KOG0980 Actin-binding protein 88.5 21 0.00046 40.4 16.3 84 184-267 452-536 (980)
76 PRK04863 mukB cell division pr 88.4 19 0.0004 42.6 16.7 32 151-182 284-315 (1486)
77 COG1579 Zn-ribbon protein, pos 88.1 20 0.00044 34.6 14.2 156 160-334 28-185 (239)
78 KOG0995 Centromere-associated 88.0 21 0.00045 38.6 15.4 101 158-258 233-371 (581)
79 PF12329 TMF_DNA_bd: TATA elem 87.9 4.8 0.0001 32.0 8.4 48 164-211 2-53 (74)
80 PF09304 Cortex-I_coil: Cortex 87.9 11 0.00023 32.8 11.0 47 181-228 55-102 (107)
81 KOG0250 DNA repair protein RAD 87.6 21 0.00045 41.0 15.9 34 150-183 225-258 (1074)
82 PF07200 Mod_r: Modifier of ru 87.4 16 0.00034 31.3 11.9 104 152-266 33-136 (150)
83 TIGR03017 EpsF chain length de 87.3 19 0.00041 35.4 13.9 48 155-202 173-233 (444)
84 KOG0977 Nuclear envelope prote 87.0 25 0.00055 37.7 15.4 104 150-263 89-192 (546)
85 PRK04778 septation ring format 86.8 18 0.00038 37.9 14.1 36 176-211 347-382 (569)
86 PF12128 DUF3584: Protein of u 86.7 22 0.00048 40.5 15.7 101 157-260 604-705 (1201)
87 PRK10884 SH3 domain-containing 86.7 14 0.0003 34.6 11.9 24 150-173 90-113 (206)
88 TIGR03017 EpsF chain length de 86.7 18 0.00038 35.6 13.3 82 184-265 282-367 (444)
89 PF05384 DegS: Sensor protein 86.5 22 0.00047 32.3 12.8 91 172-262 15-106 (159)
90 TIGR01010 BexC_CtrB_KpsE polys 86.5 29 0.00063 33.6 14.5 60 152-211 169-234 (362)
91 PRK04863 mukB cell division pr 86.1 33 0.00072 40.6 17.0 31 150-183 276-306 (1486)
92 TIGR03185 DNA_S_dndD DNA sulfu 86.0 25 0.00055 37.1 14.8 72 152-224 397-468 (650)
93 PF04111 APG6: Autophagy prote 86.0 20 0.00044 35.2 13.2 94 150-246 40-133 (314)
94 KOG0976 Rho/Rac1-interacting s 86.0 32 0.00069 39.2 15.9 59 205-263 127-185 (1265)
95 PF08537 NBP1: Fungal Nap bind 85.9 6.6 0.00014 39.5 10.0 72 150-221 120-212 (323)
96 PRK10884 SH3 domain-containing 85.6 17 0.00037 34.0 12.0 26 154-179 87-112 (206)
97 PF09325 Vps5: Vps5 C terminal 85.6 26 0.00057 31.3 14.0 61 210-270 133-193 (236)
98 PF07106 TBPIP: Tat binding pr 85.5 8.9 0.00019 33.7 9.6 21 151-171 70-90 (169)
99 PF05667 DUF812: Protein of un 85.3 36 0.00078 36.6 15.6 35 150-184 325-359 (594)
100 cd07627 BAR_Vps5p The Bin/Amph 85.3 30 0.00065 31.7 14.2 60 211-270 114-173 (216)
101 PF00038 Filament: Intermediat 85.2 34 0.00073 32.2 15.0 83 183-265 53-142 (312)
102 PF04111 APG6: Autophagy prote 84.7 19 0.00042 35.3 12.4 25 244-268 110-134 (314)
103 PF09763 Sec3_C: Exocyst compl 84.6 37 0.0008 36.2 15.4 58 281-339 100-163 (701)
104 PF14988 DUF4515: Domain of un 84.5 34 0.00074 31.9 13.4 67 183-260 38-105 (206)
105 KOG0976 Rho/Rac1-interacting s 84.4 18 0.00038 41.1 13.1 128 134-263 68-199 (1265)
106 PRK04778 septation ring format 84.4 30 0.00064 36.3 14.3 78 186-263 350-427 (569)
107 TIGR03185 DNA_S_dndD DNA sulfu 84.3 39 0.00084 35.8 15.2 78 153-231 391-468 (650)
108 KOG4643 Uncharacterized coiled 84.0 26 0.00057 40.4 14.4 117 151-267 175-342 (1195)
109 PRK13729 conjugal transfer pil 83.7 3.8 8.2E-05 43.0 7.5 60 209-268 66-125 (475)
110 PF06810 Phage_GP20: Phage min 83.6 12 0.00027 33.3 9.7 116 151-274 18-136 (155)
111 PF05266 DUF724: Protein of un 83.5 34 0.00074 31.7 12.8 29 239-267 158-186 (190)
112 PF00769 ERM: Ezrin/radixin/mo 83.2 43 0.00093 31.8 13.9 39 219-257 82-120 (246)
113 TIGR01010 BexC_CtrB_KpsE polys 82.8 37 0.0008 33.0 13.4 68 151-218 175-255 (362)
114 TIGR01000 bacteriocin_acc bact 82.6 35 0.00076 34.4 13.6 25 154-178 173-197 (457)
115 PF12795 MscS_porin: Mechanose 82.6 26 0.00056 32.5 11.8 86 178-263 79-173 (240)
116 cd07623 BAR_SNX1_2 The Bin/Amp 82.5 41 0.00089 31.1 14.2 84 184-269 73-178 (224)
117 PF15456 Uds1: Up-regulated Du 82.2 21 0.00046 31.1 10.4 37 226-262 74-110 (124)
118 PF03148 Tektin: Tektin family 82.2 19 0.00042 36.0 11.6 84 174-257 262-362 (384)
119 PF04849 HAP1_N: HAP1 N-termin 82.2 49 0.0011 33.3 14.1 32 151-182 102-133 (306)
120 KOG4674 Uncharacterized conser 82.2 52 0.0011 40.0 16.4 111 150-265 1304-1426(1822)
121 PRK12704 phosphodiesterase; Pr 82.0 49 0.0011 34.8 14.8 23 227-249 104-126 (520)
122 KOG0963 Transcription factor/C 81.6 44 0.00096 36.5 14.5 41 195-235 175-219 (629)
123 KOG0994 Extracellular matrix g 81.5 9.1 0.0002 44.7 9.8 98 155-252 1196-1293(1758)
124 TIGR02231 conserved hypothetic 81.1 21 0.00046 36.6 11.6 38 147-184 65-102 (525)
125 PF05667 DUF812: Protein of un 81.1 39 0.00085 36.3 13.9 97 155-254 323-422 (594)
126 PF06785 UPF0242: Uncharacteri 81.1 59 0.0013 33.6 14.4 85 183-270 140-224 (401)
127 KOG0963 Transcription factor/C 81.0 41 0.00089 36.8 14.0 67 185-251 190-260 (629)
128 PRK11519 tyrosine kinase; Prov 80.9 48 0.001 35.7 14.6 49 154-202 268-322 (719)
129 PF10481 CENP-F_N: Cenp-F N-te 80.9 36 0.00079 34.2 12.6 71 149-219 14-109 (307)
130 PF13514 AAA_27: AAA domain 80.4 54 0.0012 37.0 15.3 53 154-206 158-210 (1111)
131 PF05622 HOOK: HOOK protein; 80.3 0.54 1.2E-05 50.0 0.0 79 183-261 508-597 (713)
132 PF14197 Cep57_CLD_2: Centroso 80.2 12 0.00027 29.6 7.6 50 153-202 5-65 (69)
133 PF05010 TACC: Transforming ac 80.1 55 0.0012 31.0 13.3 27 241-267 77-103 (207)
134 KOG4438 Centromere-associated 79.8 86 0.0019 33.1 16.5 122 148-269 168-298 (446)
135 KOG2391 Vacuolar sorting prote 79.6 80 0.0017 32.6 16.0 31 63-93 124-156 (365)
136 PF13870 DUF4201: Domain of un 78.9 46 0.001 29.4 16.3 115 153-267 42-172 (177)
137 PF05546 She9_MDM33: She9 / Md 78.7 17 0.00037 34.6 9.3 55 182-237 24-78 (207)
138 PF06428 Sec2p: GDP/GTP exchan 78.6 4.2 9.2E-05 34.3 4.8 70 154-225 16-85 (100)
139 PRK09841 cryptic autophosphory 78.6 48 0.001 35.7 13.7 48 155-202 269-322 (726)
140 PF12329 TMF_DNA_bd: TATA elem 78.5 31 0.00067 27.4 9.4 65 196-263 3-70 (74)
141 KOG0996 Structural maintenance 78.5 86 0.0019 36.9 16.0 67 150-216 444-511 (1293)
142 PF12128 DUF3584: Protein of u 78.4 66 0.0014 36.8 15.3 32 212-243 823-854 (1201)
143 KOG4674 Uncharacterized conser 78.3 85 0.0018 38.3 16.5 85 179-265 698-784 (1822)
144 TIGR02680 conserved hypothetic 78.0 73 0.0016 37.2 15.7 20 300-319 444-463 (1353)
145 PF04350 PilO: Pilus assembly 77.4 3.2 7E-05 34.3 3.8 64 156-219 2-68 (144)
146 COG5185 HEC1 Protein involved 77.0 95 0.0021 33.6 14.9 67 191-257 330-406 (622)
147 PF06008 Laminin_I: Laminin Do 76.9 60 0.0013 30.5 12.4 92 156-268 20-115 (264)
148 PRK00106 hypothetical protein; 76.8 72 0.0016 34.1 14.2 46 214-259 106-151 (535)
149 PF05911 DUF869: Plant protein 76.7 63 0.0014 36.1 14.1 19 48-66 373-391 (769)
150 KOG2010 Double stranded RNA bi 76.6 8 0.00017 39.6 6.9 163 157-331 144-336 (405)
151 TIGR00293 prefoldin, archaeal 76.5 21 0.00046 29.6 8.4 41 224-264 84-124 (126)
152 KOG0971 Microtubule-associated 76.0 77 0.0017 36.7 14.6 28 239-266 324-351 (1243)
153 PF12777 MT: Microtubule-bindi 75.9 20 0.00044 35.1 9.4 98 156-256 217-314 (344)
154 TIGR03319 YmdA_YtgF conserved 75.7 76 0.0017 33.4 13.9 41 217-257 88-128 (514)
155 PRK03947 prefoldin subunit alp 75.6 42 0.00091 28.5 10.1 45 223-267 91-135 (140)
156 PF13166 AAA_13: AAA domain 75.4 1.1E+02 0.0024 32.1 16.3 21 153-173 329-349 (712)
157 PRK10361 DNA recombination pro 75.3 1.2E+02 0.0025 32.3 17.1 84 180-263 77-181 (475)
158 TIGR03319 YmdA_YtgF conserved 75.1 86 0.0019 33.0 14.1 56 197-252 75-130 (514)
159 KOG4657 Uncharacterized conser 75.0 88 0.0019 30.7 13.3 90 179-269 17-108 (246)
160 cd00176 SPEC Spectrin repeats, 74.9 47 0.001 27.5 15.1 116 151-267 31-166 (213)
161 COG2433 Uncharacterized conser 74.5 65 0.0014 35.4 13.2 31 223-253 478-508 (652)
162 COG4026 Uncharacterized protei 74.5 29 0.00063 34.2 9.8 32 169-200 148-179 (290)
163 TIGR01000 bacteriocin_acc bact 74.5 1E+02 0.0022 31.2 14.8 27 241-267 237-263 (457)
164 PRK12704 phosphodiesterase; Pr 74.5 1.2E+02 0.0026 32.0 16.4 54 197-250 81-134 (520)
165 PF15619 Lebercilin: Ciliary p 74.4 74 0.0016 29.5 12.3 115 150-267 65-184 (194)
166 KOG3809 Microtubule-binding pr 74.3 1.1E+02 0.0025 32.7 14.6 37 229-265 528-564 (583)
167 KOG3990 Uncharacterized conser 74.3 16 0.00035 36.3 8.1 51 127-179 201-251 (305)
168 PF05384 DegS: Sensor protein 73.9 71 0.0015 29.1 16.5 113 148-260 22-153 (159)
169 PF06810 Phage_GP20: Phage min 73.9 27 0.00059 31.2 8.9 69 180-255 16-84 (155)
170 KOG0979 Structural maintenance 73.8 93 0.002 36.0 14.7 90 171-260 256-345 (1072)
171 TIGR02680 conserved hypothetic 73.7 1.6E+02 0.0036 34.4 17.0 41 184-224 269-309 (1353)
172 KOG0240 Kinesin (SMY1 subfamil 73.5 41 0.00089 36.6 11.4 72 189-267 426-497 (607)
173 COG5185 HEC1 Protein involved 73.5 73 0.0016 34.4 13.1 118 150-267 341-507 (622)
174 KOG4643 Uncharacterized coiled 73.4 1.1E+02 0.0024 35.7 15.0 115 153-267 425-557 (1195)
175 COG3883 Uncharacterized protei 73.2 84 0.0018 31.0 12.7 86 134-219 125-211 (265)
176 KOG3433 Protein involved in me 73.1 27 0.00059 33.2 9.0 70 200-269 76-145 (203)
177 PF01576 Myosin_tail_1: Myosin 73.0 1.1 2.5E-05 49.1 0.0 19 300-318 316-334 (859)
178 PF07111 HCR: Alpha helical co 73.0 1.1E+02 0.0024 34.2 14.6 107 144-263 153-272 (739)
179 PF09730 BicD: Microtubule-ass 72.4 1.7E+02 0.0036 32.7 17.6 30 231-260 424-453 (717)
180 KOG0243 Kinesin-like protein [ 72.2 90 0.0019 36.1 14.2 59 150-208 452-521 (1041)
181 PRK11578 macrolide transporter 72.0 57 0.0012 31.6 11.3 48 188-235 117-167 (370)
182 KOG1029 Endocytic adaptor prot 71.9 47 0.001 37.7 11.7 82 150-231 483-589 (1118)
183 KOG4593 Mitotic checkpoint pro 71.2 1.8E+02 0.0039 32.6 17.0 66 184-259 133-198 (716)
184 cd07596 BAR_SNX The Bin/Amphip 71.2 68 0.0015 27.7 12.8 60 210-269 115-174 (218)
185 KOG0994 Extracellular matrix g 70.8 1.5E+02 0.0031 35.6 15.3 52 157-208 1623-1678(1758)
186 PF05483 SCP-1: Synaptonemal c 70.5 1.9E+02 0.0041 32.6 18.0 92 157-255 545-651 (786)
187 PF00846 Hanta_nucleocap: Hant 70.3 14 0.00031 38.4 7.0 67 161-227 3-71 (428)
188 PF05529 Bap31: B-cell recepto 70.2 27 0.00059 31.2 8.1 60 153-214 125-184 (192)
189 COG1340 Uncharacterized archae 70.1 1.2E+02 0.0027 30.3 16.9 110 151-267 136-248 (294)
190 KOG0978 E3 ubiquitin ligase in 70.0 1.8E+02 0.004 32.4 15.5 33 230-262 570-602 (698)
191 PF07798 DUF1640: Protein of u 69.6 84 0.0018 28.1 11.5 20 183-202 79-98 (177)
192 PF04582 Reo_sigmaC: Reovirus 69.3 11 0.00023 38.1 5.8 117 153-272 35-158 (326)
193 PF05529 Bap31: B-cell recepto 69.3 55 0.0012 29.3 9.8 70 178-267 119-188 (192)
194 PF09726 Macoilin: Transmembra 69.2 1.1E+02 0.0024 33.6 13.8 36 179-214 540-575 (697)
195 PF12072 DUF3552: Domain of un 68.7 95 0.0021 28.4 14.8 63 169-231 56-118 (201)
196 KOG0979 Structural maintenance 68.6 2.4E+02 0.0052 33.0 19.5 175 150-328 178-397 (1072)
197 KOG0240 Kinesin (SMY1 subfamil 68.5 1.1E+02 0.0023 33.6 13.2 83 153-245 414-496 (607)
198 TIGR03794 NHPM_micro_HlyD NHPM 68.4 1.3E+02 0.0028 29.9 13.3 61 150-210 100-165 (421)
199 PRK11281 hypothetical protein; 68.3 1.4E+02 0.0031 34.7 14.9 50 184-233 128-177 (1113)
200 PF12777 MT: Microtubule-bindi 68.0 26 0.00056 34.4 8.0 82 186-267 209-290 (344)
201 PRK00106 hypothetical protein; 67.3 1.8E+02 0.004 31.2 14.8 55 199-253 98-152 (535)
202 smart00502 BBC B-Box C-termina 67.0 61 0.0013 25.5 15.0 98 157-267 4-102 (127)
203 COG3206 GumC Uncharacterized p 66.7 1.1E+02 0.0023 31.0 12.2 78 184-265 313-391 (458)
204 COG3937 Uncharacterized conser 66.7 26 0.00056 30.6 6.8 19 184-202 83-101 (108)
205 PRK11578 macrolide transporter 66.4 1E+02 0.0022 29.9 11.7 9 159-167 105-113 (370)
206 smart00338 BRLZ basic region l 66.2 23 0.00051 26.6 5.9 40 224-263 24-63 (65)
207 PF03915 AIP3: Actin interacti 65.7 1.7E+02 0.0037 30.5 13.7 82 150-231 173-272 (424)
208 PF05335 DUF745: Protein of un 65.5 1.2E+02 0.0026 28.3 12.3 14 162-175 69-82 (188)
209 PF14282 FlxA: FlxA-like prote 65.4 44 0.00096 28.0 7.9 52 152-204 18-71 (106)
210 PRK11281 hypothetical protein; 65.3 1.3E+02 0.0027 35.1 13.7 87 175-262 85-178 (1113)
211 COG4372 Uncharacterized protei 64.8 2E+02 0.0043 30.6 15.0 98 161-261 75-179 (499)
212 PF11559 ADIP: Afadin- and alp 64.8 92 0.002 26.8 14.8 97 166-262 48-148 (151)
213 KOG0995 Centromere-associated 64.3 2.2E+02 0.0049 31.1 16.0 118 150-267 305-466 (581)
214 PF05622 HOOK: HOOK protein; 64.3 2.2 4.8E-05 45.5 0.0 110 158-267 313-425 (713)
215 KOG0018 Structural maintenance 63.9 86 0.0019 36.5 11.9 105 151-259 232-336 (1141)
216 PF10473 CENP-F_leu_zip: Leuci 63.8 1.1E+02 0.0024 27.4 16.5 73 154-226 18-94 (140)
217 KOG4809 Rab6 GTPase-interactin 63.4 61 0.0013 35.4 10.2 64 174-237 328-405 (654)
218 PF04728 LPP: Lipoprotein leuc 63.4 19 0.00041 28.1 4.9 34 226-259 3-36 (56)
219 PF01920 Prefoldin_2: Prefoldi 63.3 72 0.0016 25.1 9.5 31 152-182 11-41 (106)
220 PF02996 Prefoldin: Prefoldin 63.3 40 0.00086 27.4 7.1 63 154-216 4-116 (120)
221 PF06008 Laminin_I: Laminin Do 62.7 1.4E+02 0.003 28.1 14.8 77 164-240 124-213 (264)
222 cd00890 Prefoldin Prefoldin is 62.7 84 0.0018 25.6 10.5 41 225-265 86-126 (129)
223 PRK10929 putative mechanosensi 62.5 1.9E+02 0.004 33.8 14.4 49 183-233 200-248 (1109)
224 PF07111 HCR: Alpha helical co 62.5 2.7E+02 0.0058 31.4 15.0 98 153-250 478-581 (739)
225 PRK11546 zraP zinc resistance 62.4 26 0.00056 31.6 6.3 49 157-205 58-110 (143)
226 PF01576 Myosin_tail_1: Myosin 62.1 2.6 5.6E-05 46.4 0.0 81 183-263 552-632 (859)
227 TIGR02338 gimC_beta prefoldin, 62.0 92 0.002 25.8 9.8 32 228-259 76-107 (110)
228 PF12761 End3: Actin cytoskele 61.6 45 0.00097 31.6 8.0 55 154-218 97-152 (195)
229 COG0172 SerS Seryl-tRNA synthe 61.5 1.1E+02 0.0024 32.0 11.5 103 155-267 4-109 (429)
230 PF07106 TBPIP: Tat binding pr 61.5 66 0.0014 28.2 8.7 29 154-182 80-108 (169)
231 cd00584 Prefoldin_alpha Prefol 61.3 96 0.0021 25.8 9.8 32 151-182 11-42 (129)
232 COG0216 PrfA Protein chain rel 61.2 1.2E+02 0.0026 31.4 11.3 93 154-252 8-102 (363)
233 PF07926 TPR_MLP1_2: TPR/MLP1/ 60.6 1.1E+02 0.0023 26.2 11.3 21 245-265 64-84 (132)
234 KOG1853 LIS1-interacting prote 59.9 51 0.0011 33.1 8.4 62 152-213 97-169 (333)
235 PF07926 TPR_MLP1_2: TPR/MLP1/ 59.5 1.1E+02 0.0024 26.1 15.4 57 192-248 60-120 (132)
236 PF03962 Mnd1: Mnd1 family; I 59.3 81 0.0018 28.9 9.1 18 240-257 135-152 (188)
237 PF04880 NUDE_C: NUDE protein, 59.3 17 0.00037 33.4 4.8 44 178-221 1-47 (166)
238 cd00632 Prefoldin_beta Prefold 59.2 99 0.0021 25.3 9.9 28 154-181 14-41 (105)
239 PF12718 Tropomyosin_1: Tropom 59.0 1.3E+02 0.0028 26.6 16.0 49 157-205 18-70 (143)
240 KOG0978 E3 ubiquitin ligase in 58.8 3E+02 0.0065 30.8 15.7 53 211-263 467-519 (698)
241 KOG1937 Uncharacterized conser 58.8 2.6E+02 0.0057 30.1 14.6 95 156-258 265-363 (521)
242 PF14817 HAUS5: HAUS augmin-li 58.6 1.2E+02 0.0026 33.2 11.5 107 152-265 364-472 (632)
243 PF03962 Mnd1: Mnd1 family; I 58.2 1.5E+02 0.0032 27.3 10.6 100 145-254 61-163 (188)
244 PF11594 Med28: Mediator compl 57.5 39 0.00084 29.4 6.3 20 157-176 39-58 (106)
245 PF11336 DUF3138: Protein of u 57.5 15 0.00033 38.8 4.5 28 238-265 81-108 (514)
246 PF09766 FimP: Fms-interacting 57.4 1.8E+02 0.0038 29.2 11.8 41 220-260 85-128 (355)
247 PF02403 Seryl_tRNA_N: Seryl-t 57.4 44 0.00095 27.1 6.4 16 182-197 48-63 (108)
248 TIGR02231 conserved hypothetic 57.3 93 0.002 32.0 10.1 17 157-173 68-84 (525)
249 KOG0946 ER-Golgi vesicle-tethe 57.1 2.6E+02 0.0056 32.2 13.8 70 196-266 756-832 (970)
250 KOG0804 Cytoplasmic Zn-finger 57.0 2.8E+02 0.006 29.8 13.7 19 184-202 382-400 (493)
251 PF13514 AAA_27: AAA domain 56.7 3.5E+02 0.0075 30.8 15.4 36 232-267 895-930 (1111)
252 COG4942 Membrane-bound metallo 56.6 1.1E+02 0.0024 32.0 10.5 21 211-231 86-106 (420)
253 PF04859 DUF641: Plant protein 56.1 41 0.0009 29.9 6.4 32 235-266 89-120 (131)
254 KOG1003 Actin filament-coating 55.8 2E+02 0.0043 27.8 16.1 107 154-267 26-136 (205)
255 COG4487 Uncharacterized protei 55.6 2.8E+02 0.0061 29.4 14.9 143 154-317 36-180 (438)
256 PF06005 DUF904: Protein of un 55.5 1E+02 0.0022 24.7 8.0 48 152-199 17-68 (72)
257 PLN03229 acetyl-coenzyme A car 55.5 2.8E+02 0.0061 31.3 13.8 26 190-215 603-629 (762)
258 PF07200 Mod_r: Modifier of ru 55.4 1.3E+02 0.0029 25.6 11.7 51 165-215 29-79 (150)
259 KOG0517 Beta-spectrin [Cytoske 55.4 93 0.002 38.5 10.7 96 152-256 1347-1445(2473)
260 PRK15178 Vi polysaccharide exp 55.3 1.8E+02 0.004 30.5 11.9 117 150-267 239-378 (434)
261 PF14932 HAUS-augmin3: HAUS au 55.2 1.9E+02 0.0042 27.5 12.8 20 246-265 134-153 (256)
262 PF05531 NPV_P10: Nucleopolyhe 55.1 63 0.0014 26.5 6.8 54 152-212 10-63 (75)
263 PF09787 Golgin_A5: Golgin sub 55.0 2.7E+02 0.0058 29.1 14.6 30 183-212 227-260 (511)
264 PF05557 MAD: Mitotic checkpoi 54.9 4 8.7E-05 43.6 0.0 49 152-200 191-239 (722)
265 COG0419 SbcC ATPase involved i 54.8 3.4E+02 0.0073 30.2 17.0 12 72-83 132-143 (908)
266 KOG4360 Uncharacterized coiled 54.6 73 0.0016 34.5 9.0 66 153-218 233-302 (596)
267 KOG0964 Structural maintenance 54.6 4.3E+02 0.0092 31.2 15.4 118 150-267 675-805 (1200)
268 PF02050 FliJ: Flagellar FliJ 54.6 98 0.0021 23.9 12.3 22 184-205 45-66 (123)
269 PF02050 FliJ: Flagellar FliJ 54.1 1E+02 0.0022 23.8 13.1 50 183-232 51-100 (123)
270 KOG0964 Structural maintenance 53.8 2.2E+02 0.0047 33.4 12.8 20 68-89 561-580 (1200)
271 COG1340 Uncharacterized archae 53.6 2.5E+02 0.0054 28.3 16.6 53 150-202 155-211 (294)
272 PF06103 DUF948: Bacterial pro 53.4 1.1E+02 0.0023 24.3 7.8 57 214-270 28-84 (90)
273 PF11559 ADIP: Afadin- and alp 53.3 1.5E+02 0.0032 25.5 13.3 68 182-249 71-149 (151)
274 KOG4673 Transcription factor T 53.0 4E+02 0.0086 30.5 14.3 107 149-265 491-623 (961)
275 PF03961 DUF342: Protein of un 52.9 1.1E+02 0.0023 31.1 9.6 32 150-181 331-362 (451)
276 KOG0612 Rho-associated, coiled 52.8 3.2E+02 0.007 32.6 14.1 21 209-229 660-680 (1317)
277 KOG0971 Microtubule-associated 52.5 4.1E+02 0.0089 31.2 14.5 94 172-265 320-442 (1243)
278 PF02388 FemAB: FemAB family; 52.4 62 0.0013 32.5 7.8 57 204-264 241-297 (406)
279 PF10473 CENP-F_leu_zip: Leuci 51.4 1.8E+02 0.004 26.1 15.3 104 161-264 8-111 (140)
280 PRK10476 multidrug resistance 51.4 2.3E+02 0.005 27.2 12.6 80 154-236 94-176 (346)
281 PF15070 GOLGA2L5: Putative go 51.4 3.6E+02 0.0078 29.4 18.6 69 139-213 152-231 (617)
282 PRK10476 multidrug resistance 51.3 2.3E+02 0.005 27.2 14.9 18 154-171 87-104 (346)
283 PF06120 Phage_HK97_TLTM: Tail 51.0 2.7E+02 0.0059 27.9 14.3 106 152-262 47-170 (301)
284 KOG0962 DNA repair protein RAD 50.9 4.3E+02 0.0093 31.7 14.8 107 150-257 234-349 (1294)
285 TIGR01730 RND_mfp RND family e 50.9 83 0.0018 28.8 7.8 16 214-229 104-119 (322)
286 PF05557 MAD: Mitotic checkpoi 50.8 5.1 0.00011 42.8 0.0 27 184-210 192-218 (722)
287 PF14817 HAUS5: HAUS augmin-li 50.5 2.7E+02 0.0058 30.6 12.5 48 171-218 80-127 (632)
288 PF11932 DUF3450: Protein of u 50.4 2.2E+02 0.0047 26.6 14.2 13 154-166 25-37 (251)
289 PRK03947 prefoldin subunit alp 50.2 1.6E+02 0.0035 25.0 10.1 45 153-197 6-50 (140)
290 KOG4593 Mitotic checkpoint pro 50.1 4.2E+02 0.0091 29.8 15.3 29 154-182 194-222 (716)
291 TIGR00998 8a0101 efflux pump m 48.9 2.3E+02 0.0051 26.6 13.5 77 154-233 88-167 (334)
292 PF03999 MAP65_ASE1: Microtubu 48.9 5.7 0.00012 41.9 0.0 86 182-267 82-169 (619)
293 PF07246 Phlebovirus_NSM: Phle 48.8 2.7E+02 0.0059 27.7 11.3 45 223-267 206-250 (264)
294 PF05335 DUF745: Protein of un 48.7 2.3E+02 0.005 26.5 13.1 44 184-227 74-117 (188)
295 COG4942 Membrane-bound metallo 48.4 3.5E+02 0.0077 28.5 14.9 68 193-260 173-244 (420)
296 PF07851 TMPIT: TMPIT-like pro 48.2 1.8E+02 0.0039 29.6 10.2 82 176-257 3-85 (330)
297 PF12325 TMF_TATA_bd: TATA ele 47.9 1.9E+02 0.0041 25.2 10.2 85 162-253 18-109 (120)
298 PF05278 PEARLI-4: Arabidopsis 47.7 3E+02 0.0064 27.4 12.8 15 168-182 150-164 (269)
299 PRK10803 tol-pal system protei 47.6 39 0.00085 32.2 5.4 11 306-316 142-152 (263)
300 PF09787 Golgin_A5: Golgin sub 47.6 3.5E+02 0.0076 28.2 14.4 118 150-267 285-426 (511)
301 PF04508 Pox_A_type_inc: Viral 47.5 19 0.00041 23.7 2.2 18 154-171 2-19 (23)
302 PF14257 DUF4349: Domain of un 47.4 92 0.002 29.1 7.7 67 148-215 127-193 (262)
303 KOG0018 Structural maintenance 46.8 2.5E+02 0.0053 33.1 11.9 73 158-234 664-740 (1141)
304 KOG4603 TBP-1 interacting prot 46.7 1.2E+02 0.0026 28.9 8.1 71 138-211 73-143 (201)
305 PRK03598 putative efflux pump 46.6 2.4E+02 0.0052 26.9 10.4 81 183-263 113-201 (331)
306 PF15066 CAGE1: Cancer-associa 46.3 4.2E+02 0.0091 28.7 18.1 67 182-248 360-433 (527)
307 KOG1029 Endocytic adaptor prot 46.2 5.3E+02 0.012 29.9 14.9 15 231-245 442-456 (1118)
308 KOG4552 Vitamin-D-receptor int 46.2 1.5E+02 0.0032 29.2 8.9 55 169-223 52-106 (272)
309 PF14662 CCDC155: Coiled-coil 46.0 2.7E+02 0.0059 26.5 13.1 21 208-228 133-153 (193)
310 TIGR03794 NHPM_micro_HlyD NHPM 45.7 3.2E+02 0.0069 27.2 15.1 22 242-263 229-250 (421)
311 PF05483 SCP-1: Synaptonemal c 45.6 5E+02 0.011 29.5 15.8 107 150-256 176-305 (786)
312 PF14988 DUF4515: Domain of un 45.6 2.6E+02 0.0057 26.2 16.1 86 149-237 35-130 (206)
313 KOG4809 Rab6 GTPase-interactin 45.5 4.7E+02 0.01 29.0 14.3 59 150-211 335-393 (654)
314 PF05266 DUF724: Protein of un 45.4 2.6E+02 0.0055 26.0 13.2 13 243-255 169-181 (190)
315 KOG1899 LAR transmembrane tyro 45.3 3.7E+02 0.008 30.4 12.5 114 150-267 136-266 (861)
316 PF10805 DUF2730: Protein of u 45.2 1.7E+02 0.0036 24.6 8.1 60 152-214 34-95 (106)
317 TIGR00293 prefoldin, archaeal 44.7 1.8E+02 0.0039 24.1 10.1 44 156-207 9-52 (126)
318 cd00584 Prefoldin_alpha Prefol 44.5 75 0.0016 26.5 6.0 39 227-265 88-126 (129)
319 PF03961 DUF342: Protein of un 44.5 1.6E+02 0.0035 29.8 9.4 34 223-256 372-405 (451)
320 KOG0244 Kinesin-like protein [ 44.4 1.8E+02 0.0039 33.4 10.4 98 150-247 464-601 (913)
321 PF11570 E2R135: Coiled-coil r 44.1 2.5E+02 0.0054 25.6 11.9 43 150-195 12-54 (136)
322 PRK10636 putative ABC transpor 44.0 97 0.0021 32.9 8.0 24 181-204 567-590 (638)
323 PF05911 DUF869: Plant protein 43.8 5.2E+02 0.011 29.2 14.3 17 324-340 744-760 (769)
324 PF11315 Med30: Mediator compl 43.7 1.2E+02 0.0026 27.7 7.4 78 236-313 41-119 (150)
325 KOG0612 Rho-associated, coiled 43.6 2.9E+02 0.0063 33.0 12.0 43 210-252 492-534 (1317)
326 PF05103 DivIVA: DivIVA protei 43.6 11 0.00024 31.0 0.9 24 240-263 107-130 (131)
327 PRK14153 heat shock protein Gr 43.5 92 0.002 29.2 7.0 56 150-215 30-86 (194)
328 PRK06975 bifunctional uroporph 43.5 1.7E+02 0.0038 31.5 9.9 12 329-340 544-555 (656)
329 PRK11546 zraP zinc resistance 43.4 1.2E+02 0.0025 27.5 7.3 54 212-265 61-114 (143)
330 PF05278 PEARLI-4: Arabidopsis 43.3 3.5E+02 0.0076 27.0 13.2 25 176-200 151-175 (269)
331 PF10234 Cluap1: Clusterin-ass 43.1 3.1E+02 0.0068 27.1 10.8 40 207-246 178-217 (267)
332 PF09789 DUF2353: Uncharacteri 42.7 3.8E+02 0.0082 27.2 13.7 75 179-257 74-157 (319)
333 PF04728 LPP: Lipoprotein leuc 42.5 1.6E+02 0.0035 23.0 7.0 24 179-202 5-28 (56)
334 COG1382 GimC Prefoldin, chaper 42.4 2.4E+02 0.0053 24.9 12.2 98 159-260 9-111 (119)
335 KOG1937 Uncharacterized conser 42.4 4.8E+02 0.01 28.3 13.6 34 221-254 288-321 (521)
336 PF10481 CENP-F_N: Cenp-F N-te 42.4 2.9E+02 0.0063 28.0 10.5 44 184-227 18-61 (307)
337 TIGR02132 phaR_Bmeg polyhydrox 42.3 3.1E+02 0.0068 26.1 11.4 82 155-236 81-182 (189)
338 PRK05431 seryl-tRNA synthetase 42.1 1.2E+02 0.0027 30.9 8.2 15 180-194 45-59 (425)
339 TIGR02971 heterocyst_DevB ABC 42.1 3.1E+02 0.0066 25.9 14.1 57 178-234 98-157 (327)
340 KOG4302 Microtubule-associated 41.8 2.7E+02 0.0058 30.9 11.0 73 152-224 67-143 (660)
341 PRK09841 cryptic autophosphory 41.7 4.9E+02 0.011 28.3 13.7 61 153-213 274-347 (726)
342 PF09486 HrpB7: Bacterial type 41.7 2.8E+02 0.0061 25.4 15.2 114 154-267 16-141 (158)
343 PF00170 bZIP_1: bZIP transcri 41.5 1.3E+02 0.0027 22.6 6.3 37 224-260 24-60 (64)
344 cd07625 BAR_Vps17p The Bin/Amp 41.3 56 0.0012 31.2 5.3 58 212-269 129-186 (230)
345 KOG0239 Kinesin (KAR3 subfamil 40.7 5.2E+02 0.011 28.6 13.0 73 184-256 241-316 (670)
346 PF02403 Seryl_tRNA_N: Seryl-t 40.6 2E+02 0.0043 23.3 9.6 97 155-262 4-103 (108)
347 PRK11519 tyrosine kinase; Prov 40.5 5.1E+02 0.011 28.1 14.2 62 152-213 273-347 (719)
348 KOG0804 Cytoplasmic Zn-finger 40.3 5.1E+02 0.011 28.0 14.2 20 247-266 428-447 (493)
349 PF08172 CASP_C: CASP C termin 40.2 1.4E+02 0.0031 28.7 7.9 32 228-259 95-126 (248)
350 PF15112 DUF4559: Domain of un 39.7 2.9E+02 0.0062 28.1 10.1 108 150-261 180-302 (307)
351 PRK13169 DNA replication intia 39.3 60 0.0013 28.0 4.7 32 171-202 2-33 (110)
352 PF13815 Dzip-like_N: Iguana/D 39.1 1.3E+02 0.0029 25.3 6.7 46 169-214 72-117 (118)
353 PRK02119 hypothetical protein; 39.0 2E+02 0.0043 22.9 7.3 24 155-178 4-27 (73)
354 cd07653 F-BAR_CIP4-like The F- 39.0 3.1E+02 0.0067 25.1 14.4 67 183-249 118-184 (251)
355 COG1730 GIM5 Predicted prefold 38.9 2E+02 0.0043 26.0 8.1 108 153-267 13-135 (145)
356 PF02388 FemAB: FemAB family; 38.9 1.4E+02 0.0031 30.0 8.0 49 154-202 243-291 (406)
357 PF14662 CCDC155: Coiled-coil 38.9 3.5E+02 0.0077 25.8 14.6 24 178-201 54-77 (193)
358 PRK10246 exonuclease subunit S 38.6 6.5E+02 0.014 28.8 16.4 23 295-317 774-796 (1047)
359 PRK00409 recombination and DNA 38.4 6E+02 0.013 28.3 14.6 79 153-237 516-595 (782)
360 COG4026 Uncharacterized protei 38.3 3.2E+02 0.0069 27.3 9.9 13 157-169 132-144 (290)
361 PF12761 End3: Actin cytoskele 38.2 1.7E+02 0.0036 27.9 7.8 46 218-263 138-183 (195)
362 KOG3595 Dyneins, heavy chain [ 38.0 2.1E+02 0.0046 33.7 10.1 84 184-267 920-1003(1395)
363 PRK04325 hypothetical protein; 37.9 1.5E+02 0.0033 23.6 6.5 30 187-216 5-34 (74)
364 PRK02119 hypothetical protein; 37.5 1.5E+02 0.0032 23.6 6.4 30 186-215 4-33 (73)
365 PF11819 DUF3338: Domain of un 37.2 1.1E+02 0.0023 27.7 6.1 49 135-183 10-62 (138)
366 PF07794 DUF1633: Protein of u 37.0 2.5E+02 0.0055 30.9 9.7 61 183-243 617-680 (790)
367 TIGR03545 conserved hypothetic 36.6 3.2E+02 0.007 29.3 10.5 39 160-198 164-205 (555)
368 PF14257 DUF4349: Domain of un 36.4 1.4E+02 0.0029 28.0 7.0 53 214-267 134-189 (262)
369 TIGR03752 conj_TIGR03752 integ 36.2 5.7E+02 0.012 27.4 12.1 88 152-269 58-145 (472)
370 KOG3859 Septins (P-loop GTPase 36.2 5.2E+02 0.011 26.9 11.5 54 144-203 321-378 (406)
371 TIGR03495 phage_LysB phage lys 36.1 3.2E+02 0.007 24.5 10.3 64 185-248 27-90 (135)
372 PF11180 DUF2968: Protein of u 36.1 1E+02 0.0022 29.4 6.0 92 169-263 93-184 (192)
373 PF06156 DUF972: Protein of un 36.1 75 0.0016 27.1 4.8 32 171-202 2-33 (107)
374 PF11853 DUF3373: Protein of u 35.7 36 0.00077 36.1 3.3 15 154-169 26-40 (489)
375 PRK14143 heat shock protein Gr 35.5 1.9E+02 0.0042 27.9 7.9 56 150-215 64-120 (238)
376 PF09755 DUF2046: Uncharacteri 35.2 5E+02 0.011 26.4 15.6 108 155-264 86-202 (310)
377 PF12325 TMF_TATA_bd: TATA ele 35.1 3.1E+02 0.0067 24.0 9.1 72 154-235 31-105 (120)
378 KOG4687 Uncharacterized coiled 35.1 5.2E+02 0.011 26.6 12.9 110 152-261 8-125 (389)
379 KOG1760 Molecular chaperone Pr 34.9 1.4E+02 0.0031 26.9 6.4 37 165-201 82-119 (131)
380 PLN02678 seryl-tRNA synthetase 34.7 1.9E+02 0.004 30.3 8.2 17 179-195 49-65 (448)
381 KOG3759 Uncharacterized RUN do 34.3 1.8E+02 0.0038 31.6 8.0 99 148-257 144-244 (621)
382 PF12072 DUF3552: Domain of un 34.2 3.7E+02 0.008 24.6 13.3 66 187-252 67-132 (201)
383 KOG4787 Uncharacterized conser 34.2 4.3E+02 0.0093 29.7 11.0 98 159-257 412-532 (852)
384 PF06160 EzrA: Septation ring 34.2 5.9E+02 0.013 27.0 14.4 28 177-204 344-371 (560)
385 PF04859 DUF641: Plant protein 34.1 1.1E+02 0.0024 27.3 5.6 42 211-252 79-120 (131)
386 PRK14161 heat shock protein Gr 34.0 2E+02 0.0043 26.6 7.5 26 154-179 20-46 (178)
387 TIGR01730 RND_mfp RND family e 34.0 3.4E+02 0.0074 24.9 9.0 8 159-166 70-77 (322)
388 PF12240 Angiomotin_C: Angiomo 34.0 3.9E+02 0.0084 25.8 9.5 36 230-265 126-164 (205)
389 PF05377 FlaC_arch: Flagella a 34.0 52 0.0011 25.6 3.2 20 244-263 4-23 (55)
390 PLN03229 acetyl-coenzyme A car 33.2 3E+02 0.0065 31.1 9.8 17 244-260 716-732 (762)
391 PRK10246 exonuclease subunit S 33.0 7.9E+02 0.017 28.1 19.6 27 290-316 774-802 (1047)
392 PRK00295 hypothetical protein; 32.9 2.4E+02 0.0052 22.1 7.0 40 158-200 3-42 (68)
393 KOG4603 TBP-1 interacting prot 32.8 4.5E+02 0.0098 25.2 11.5 56 183-243 85-140 (201)
394 PF04420 CHD5: CHD5-like prote 32.6 1.7E+02 0.0037 26.0 6.7 18 184-201 40-57 (161)
395 COG3524 KpsE Capsule polysacch 32.4 5.9E+02 0.013 26.5 12.9 98 175-272 161-280 (372)
396 PRK10929 putative mechanosensi 32.3 9E+02 0.02 28.5 15.8 58 150-207 62-132 (1109)
397 PF12210 Hrs_helical: Hepatocy 32.3 3.3E+02 0.0071 23.5 7.9 49 157-205 43-91 (96)
398 PRK14140 heat shock protein Gr 32.1 2.5E+02 0.0054 26.3 7.9 33 151-183 35-68 (191)
399 PF06248 Zw10: Centromere/kine 31.8 6.2E+02 0.013 26.7 11.5 29 183-211 75-103 (593)
400 PRK10361 DNA recombination pro 31.8 6.6E+02 0.014 26.8 16.9 64 162-232 45-108 (475)
401 KOG0981 DNA topoisomerase I [R 31.6 1.2E+02 0.0025 33.7 6.3 63 143-205 633-704 (759)
402 KOG0946 ER-Golgi vesicle-tethe 31.5 5.5E+02 0.012 29.8 11.5 70 150-219 734-820 (970)
403 PF09730 BicD: Microtubule-ass 31.4 8E+02 0.017 27.6 13.6 93 151-243 364-457 (717)
404 PF12862 Apc5: Anaphase-promot 31.2 72 0.0016 25.3 3.7 33 300-332 54-86 (94)
405 PF09304 Cortex-I_coil: Cortex 31.0 3.7E+02 0.0079 23.6 13.3 45 183-227 36-80 (107)
406 PF04420 CHD5: CHD5-like prote 31.0 2.8E+02 0.0061 24.7 7.8 53 149-202 36-91 (161)
407 PRK01203 prefoldin subunit alp 30.9 1.4E+02 0.003 26.6 5.7 63 133-200 66-129 (130)
408 COG1730 GIM5 Predicted prefold 30.7 4.1E+02 0.0088 24.0 10.3 88 150-237 17-140 (145)
409 COG4477 EzrA Negative regulato 30.7 7.6E+02 0.017 27.2 14.8 57 148-204 318-374 (570)
410 PRK15396 murein lipoprotein; P 30.7 2.6E+02 0.0057 22.9 6.9 15 184-198 32-46 (78)
411 PRK10869 recombination and rep 30.6 6.8E+02 0.015 26.6 14.9 44 294-339 292-336 (553)
412 KOG0998 Synaptic vesicle prote 30.6 1.8E+02 0.0038 32.8 7.7 71 184-268 505-575 (847)
413 KOG0249 LAR-interacting protei 30.6 8.9E+02 0.019 27.9 13.9 47 221-267 208-257 (916)
414 PRK14139 heat shock protein Gr 30.4 2.6E+02 0.0057 26.1 7.7 42 154-195 33-75 (185)
415 COG3167 PilO Tfp pilus assembl 30.4 1.7E+02 0.0037 28.2 6.6 59 152-210 48-109 (211)
416 PF06248 Zw10: Centromere/kine 30.1 4.9E+02 0.011 27.4 10.4 101 154-267 77-178 (593)
417 PRK14011 prefoldin subunit alp 29.8 4.1E+02 0.0089 23.8 10.0 31 184-214 95-125 (144)
418 PRK11448 hsdR type I restricti 29.7 3.1E+02 0.0068 31.9 9.6 86 151-237 147-253 (1123)
419 TIGR00414 serS seryl-tRNA synt 29.7 2.6E+02 0.0056 28.6 8.2 16 180-195 47-62 (418)
420 PF13805 Pil1: Eisosome compon 29.7 5.7E+02 0.012 25.4 11.9 18 239-256 164-181 (271)
421 PRK14163 heat shock protein Gr 29.5 3.8E+02 0.0083 25.7 8.8 30 154-183 41-71 (214)
422 PF02181 FH2: Formin Homology 29.5 5.3E+02 0.012 25.0 10.6 25 158-182 170-194 (370)
423 PF06785 UPF0242: Uncharacteri 29.5 5.1E+02 0.011 27.2 10.1 65 152-233 140-208 (401)
424 PHA01750 hypothetical protein 29.4 1.5E+02 0.0032 24.4 5.2 24 145-168 34-57 (75)
425 PF05791 Bacillus_HBL: Bacillu 29.3 4.3E+02 0.0094 23.9 10.7 23 243-265 152-174 (184)
426 PRK15178 Vi polysaccharide exp 29.2 4.6E+02 0.0099 27.6 9.9 102 160-263 230-337 (434)
427 cd07643 I-BAR_IMD_MIM Inverse 28.9 5.6E+02 0.012 25.1 13.4 59 208-267 150-221 (231)
428 PF07544 Med9: RNA polymerase 28.8 2.6E+02 0.0056 22.5 6.5 6 224-229 71-76 (83)
429 TIGR00823 EIIA-LAC phosphotran 28.7 94 0.002 26.1 4.1 33 305-337 16-48 (99)
430 PF15035 Rootletin: Ciliary ro 28.5 3.1E+02 0.0066 25.4 7.7 77 179-258 97-177 (182)
431 PRK00373 V-type ATP synthase s 28.3 1.1E+02 0.0023 28.1 4.8 33 214-246 138-170 (204)
432 PF15450 DUF4631: Domain of un 28.1 5.1E+02 0.011 28.3 10.1 87 155-269 414-505 (531)
433 PF04102 SlyX: SlyX; InterPro 27.9 2.9E+02 0.0063 21.5 6.6 24 244-267 29-52 (69)
434 PF05008 V-SNARE: Vesicle tran 27.8 2.8E+02 0.006 21.2 7.6 56 202-264 22-78 (79)
435 TIGR00309 V_ATPase_subD H(+)-t 27.7 1.1E+02 0.0025 28.1 4.9 34 213-246 137-170 (209)
436 PF14772 NYD-SP28: Sperm tail 27.5 3.4E+02 0.0074 22.1 9.0 34 187-220 54-91 (104)
437 PRK14149 heat shock protein Gr 27.5 2.6E+02 0.0056 26.3 7.2 35 147-187 37-71 (191)
438 PF00435 Spectrin: Spectrin re 27.5 2.5E+02 0.0054 20.6 9.2 33 150-182 31-63 (105)
439 PF06160 EzrA: Septation ring 27.5 7.7E+02 0.017 26.2 14.0 107 154-263 352-474 (560)
440 TIGR01554 major_cap_HK97 phage 27.5 3.4E+02 0.0074 26.6 8.3 12 255-266 133-144 (378)
441 cd00632 Prefoldin_beta Prefold 27.4 3.5E+02 0.0075 22.1 11.4 16 154-169 7-22 (105)
442 KOG2180 Late Golgi protein sor 27.3 4.7E+02 0.01 29.8 10.0 56 212-267 65-120 (793)
443 PRK00736 hypothetical protein; 27.3 2.8E+02 0.006 21.8 6.3 40 158-200 3-42 (68)
444 COG3599 DivIVA Cell division i 27.3 5.5E+02 0.012 24.5 13.5 90 244-343 120-209 (212)
445 PRK14151 heat shock protein Gr 27.3 2.5E+02 0.0055 25.8 7.0 54 150-214 17-72 (176)
446 PRK12705 hypothetical protein; 27.2 8E+02 0.017 26.3 12.5 90 166-255 52-141 (508)
447 PF03148 Tektin: Tektin family 27.0 6.7E+02 0.014 25.3 14.3 29 233-261 324-352 (384)
448 TIGR00998 8a0101 efflux pump m 26.8 5.4E+02 0.012 24.2 10.4 12 155-166 82-93 (334)
449 PRK11147 ABC transporter ATPas 26.7 1.7E+02 0.0036 31.0 6.5 23 155-177 570-592 (635)
450 PRK05431 seryl-tRNA synthetase 26.6 5E+02 0.011 26.6 9.6 99 158-267 7-107 (425)
451 PF10046 BLOC1_2: Biogenesis o 26.6 3.7E+02 0.0079 22.2 8.9 61 154-214 36-96 (99)
452 PF10498 IFT57: Intra-flagella 26.6 7E+02 0.015 25.4 13.0 77 179-258 236-312 (359)
453 cd00215 PTS_IIA_lac PTS_IIA, P 26.6 1.1E+02 0.0024 25.6 4.1 32 305-336 14-45 (97)
454 KOG3990 Uncharacterized conser 26.2 3E+02 0.0065 27.7 7.6 31 190-220 231-261 (305)
455 PRK04406 hypothetical protein; 26.2 3.5E+02 0.0075 21.8 6.8 15 249-263 41-55 (75)
456 PF12004 DUF3498: Domain of un 26.1 22 0.00048 37.6 0.0 77 153-229 376-461 (495)
457 KOG4196 bZIP transcription fac 26.0 1.8E+02 0.0039 26.4 5.6 37 231-267 79-115 (135)
458 KOG4807 F-actin binding protei 26.0 8.6E+02 0.019 26.3 12.4 108 147-257 292-431 (593)
459 PF10498 IFT57: Intra-flagella 26.0 7.2E+02 0.016 25.4 11.6 73 178-257 253-325 (359)
460 COG5283 Phage-related tail pro 25.8 1.2E+03 0.027 28.0 15.0 89 180-268 74-176 (1213)
461 PF10205 KLRAQ: Predicted coil 25.7 4.4E+02 0.0096 22.8 10.4 17 154-170 6-22 (102)
462 PRK10454 PTS system N,N'-diace 25.6 1.1E+02 0.0024 26.5 4.2 33 305-337 30-62 (115)
463 KOG1899 LAR transmembrane tyro 25.6 4.1E+02 0.0088 30.1 9.1 72 159-232 180-258 (861)
464 PF07083 DUF1351: Protein of u 25.5 5.6E+02 0.012 23.9 10.5 68 145-214 41-108 (215)
465 PF08651 DASH_Duo1: DASH compl 25.3 3.6E+02 0.0078 21.9 6.8 45 157-201 2-46 (78)
466 PF11488 Lge1: Transcriptional 25.3 3.5E+02 0.0075 21.6 6.6 32 150-181 27-58 (80)
467 PF14282 FlxA: FlxA-like prote 25.2 3.4E+02 0.0075 22.7 6.9 51 153-204 26-78 (106)
468 PRK09591 celC cellobiose phosp 25.2 1.2E+02 0.0025 25.8 4.1 32 305-336 19-50 (104)
469 PF08647 BRE1: BRE1 E3 ubiquit 25.1 3.9E+02 0.0084 22.0 8.9 27 192-218 18-44 (96)
470 smart00435 TOPEUc DNA Topoisom 25.0 3.5E+02 0.0075 28.3 8.1 25 147-171 278-302 (391)
471 PF09006 Surfac_D-trimer: Lung 24.8 74 0.0016 24.1 2.5 14 156-169 2-15 (46)
472 PF06476 DUF1090: Protein of u 24.8 4.6E+02 0.0099 22.7 8.0 71 183-256 42-112 (115)
473 KOG3335 Predicted coiled-coil 24.7 98 0.0021 29.2 3.9 45 148-202 101-145 (181)
474 TIGR00634 recN DNA repair prot 24.7 8.3E+02 0.018 25.7 15.5 170 160-345 212-397 (563)
475 PF13863 DUF4200: Domain of un 24.4 4E+02 0.0087 21.9 12.1 84 185-268 8-102 (126)
476 PRK14147 heat shock protein Gr 24.3 3.2E+02 0.0069 25.0 7.0 31 154-190 26-56 (172)
477 PRK13182 racA polar chromosome 24.3 3.7E+02 0.0079 24.8 7.4 39 178-216 86-124 (175)
478 PF12795 MscS_porin: Mechanose 24.3 5.8E+02 0.013 23.7 12.3 50 218-267 84-133 (240)
479 PF07889 DUF1664: Protein of u 24.2 5.1E+02 0.011 23.0 12.4 28 240-267 89-116 (126)
480 PF11544 Spc42p: Spindle pole 24.1 3.9E+02 0.0084 22.2 6.7 26 158-183 3-28 (76)
481 TIGR01280 xseB exodeoxyribonuc 24.1 2.4E+02 0.0053 22.1 5.4 51 173-223 4-54 (67)
482 PF03234 CDC37_N: Cdc37 N term 24.1 5.9E+02 0.013 23.7 9.9 63 202-267 25-88 (177)
483 PF10805 DUF2730: Protein of u 23.8 4.4E+02 0.0095 22.1 9.6 28 239-266 64-91 (106)
484 PF02996 Prefoldin: Prefoldin 23.3 2.4E+02 0.0053 22.8 5.5 48 135-182 66-113 (120)
485 PRK14064 exodeoxyribonuclease 23.2 1.9E+02 0.0042 23.2 4.8 50 173-222 9-58 (75)
486 PF10168 Nup88: Nuclear pore c 23.1 1.1E+03 0.023 26.4 12.8 24 242-265 641-664 (717)
487 PF07278 DUF1441: Protein of u 23.0 2.3E+02 0.0051 25.9 5.8 42 162-203 82-145 (152)
488 PF12709 Kinetocho_Slk19: Cent 23.0 3.7E+02 0.008 22.7 6.5 37 226-262 49-85 (87)
489 KOG4324 Guanine nucleotide exc 22.9 3.9E+02 0.0085 28.6 8.1 102 152-263 106-238 (476)
490 PF11593 Med3: Mediator comple 22.9 3.6E+02 0.0078 28.2 7.7 91 161-267 9-99 (379)
491 PRK10803 tol-pal system protei 22.8 5.4E+02 0.012 24.7 8.5 14 310-323 159-176 (263)
492 PF14992 TMCO5: TMCO5 family 22.7 6.4E+02 0.014 25.3 9.2 83 162-246 86-180 (280)
493 PRK14067 exodeoxyribonuclease 22.6 2E+02 0.0044 23.5 4.9 49 173-221 10-58 (80)
494 cd00176 SPEC Spectrin repeats, 22.4 4.5E+02 0.0098 21.7 12.0 109 155-266 2-112 (213)
495 PLN02320 seryl-tRNA synthetase 22.2 5.9E+02 0.013 27.3 9.4 104 154-267 68-171 (502)
496 PF10828 DUF2570: Protein of u 22.2 4.7E+02 0.01 21.9 8.9 61 189-249 23-83 (110)
497 TIGR02492 flgK_ends flagellar 22.1 7.4E+02 0.016 24.1 9.7 79 172-260 129-211 (322)
498 PF02185 HR1: Hr1 repeat; Int 22.1 3.6E+02 0.0079 20.5 7.3 63 192-257 2-64 (70)
499 KOG2264 Exostosin EXT1L [Signa 22.0 4.9E+02 0.011 29.3 8.8 68 173-240 82-152 (907)
500 PLN02678 seryl-tRNA synthetase 21.9 7.7E+02 0.017 25.9 10.0 106 154-267 3-112 (448)
No 1
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=96.59 E-value=0.22 Score=45.45 Aligned_cols=80 Identities=21% Similarity=0.324 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDE-----LLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADK 224 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDe-----lLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadK 224 (348)
.-+.++..++++.+.|+.++.+.=+ ....+...+.++......+..|+..+.....-|+..+..+.+.+..|..+
T Consensus 24 ~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~ 103 (302)
T PF10186_consen 24 ELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQR 103 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888887766655 45555555555555555555555555544444444444444444444444
Q ss_pred HHHHH
Q 018954 225 QAALE 229 (348)
Q Consensus 225 qAaLE 229 (348)
...|.
T Consensus 104 ~~~l~ 108 (302)
T PF10186_consen 104 RSRLS 108 (302)
T ss_pred HHHHH
Confidence 44444
No 2
>PRK11637 AmiB activator; Provisional
Probab=96.59 E-value=0.11 Score=51.44 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=29.5
Q ss_pred HHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHH
Q 018954 207 IKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFM 260 (348)
Q Consensus 207 ikStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm 260 (348)
|..++.+|......+.+.+..|..++.++...+..+.+++.++...+..+...+
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555555555554433
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.03 E-value=0.37 Score=51.51 Aligned_cols=8 Identities=38% Similarity=0.866 Sum_probs=3.8
Q ss_pred ccccccee
Q 018954 79 FTRRGSMI 86 (348)
Q Consensus 79 ftRr~Smi 86 (348)
|.+.|+|+
T Consensus 649 ~~~~G~~t 656 (1164)
T TIGR02169 649 FEKSGAMT 656 (1164)
T ss_pred EcCCcCcc
Confidence 44445554
No 4
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.00 E-value=0.18 Score=55.06 Aligned_cols=110 Identities=25% Similarity=0.237 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHH
Q 018954 158 LREQVEDLQRKMF----EKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQW 233 (348)
Q Consensus 158 LreQVeeLqkKL~----EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlew 233 (348)
|++.|.-|+..+. ++|.+.+.++...+......+++|.++.+|..|+.=|...|..|..+--...|++-=++.|.-
T Consensus 250 le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lke 329 (775)
T PF10174_consen 250 LEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKE 329 (775)
T ss_pred HHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7888888877553 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 234 EAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 234 Ea~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
.+-......+.||.||+.+++++..=..++.+-+
T Consensus 330 sl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~ 363 (775)
T PF10174_consen 330 SLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQ 363 (775)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987777776643
No 5
>PRK09039 hypothetical protein; Validated
Probab=95.88 E-value=0.42 Score=47.12 Aligned_cols=85 Identities=19% Similarity=0.230 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh----hHHH
Q 018954 183 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQG----EMSS 258 (348)
Q Consensus 183 ~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~----EIss 258 (348)
..+...+.+++++++...++.-.-|.-++.|+..-+-+|+..+++|.-+|-.-.....+.++|+..|...=. |+..
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~ 194 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNR 194 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677888999999999999999999999999999999999999998888888888888888877743 3445
Q ss_pred HHHHH-HHhh
Q 018954 259 FMQIF-EGLI 267 (348)
Q Consensus 259 lm~~f-e~it 267 (348)
+...| -.|.
T Consensus 195 ~~~~~~~~l~ 204 (343)
T PRK09039 195 YRSEFFGRLR 204 (343)
T ss_pred hHHHHHHHHH
Confidence 54433 4456
No 6
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=95.82 E-value=0.51 Score=50.53 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHH
Q 018954 228 LEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFM 260 (348)
Q Consensus 228 LEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm 260 (348)
++.++-++.....+.+.++..+..++.+|..+.
T Consensus 884 l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 916 (1164)
T TIGR02169 884 LGDLKKERDELEAQLRELERKIEELEAQIEKKR 916 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444444333
No 7
>PRK11637 AmiB activator; Provisional
Probab=95.81 E-value=0.14 Score=50.90 Aligned_cols=80 Identities=13% Similarity=0.244 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHH
Q 018954 151 EIEELVALREQVEDLQRKMF----EKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQA 226 (348)
Q Consensus 151 d~eEl~~LreQVeeLqkKL~----EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqA 226 (348)
-++++..++.||..+++++. +..++...++.+..++..+..+|+++..++.+-+.-|..++.++..++..|...+.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777776 33444444555556666666666666666666666666666666666666666666
Q ss_pred HHHH
Q 018954 227 ALEK 230 (348)
Q Consensus 227 aLEK 230 (348)
.|.+
T Consensus 125 ~l~~ 128 (428)
T PRK11637 125 LLAA 128 (428)
T ss_pred HHHH
Confidence 6655
No 8
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.56 E-value=1.6 Score=38.64 Aligned_cols=119 Identities=22% Similarity=0.203 Sum_probs=110.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhh
Q 018954 149 EKEIEELVALREQVEDLQRKMFEKDELLK-----SLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLAD 223 (348)
Q Consensus 149 ~kd~eEl~~LreQVeeLqkKL~EKDelLk-----Sae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~Lad 223 (348)
.+-|-.+..|+.|+..++.+|..|+++=. --+++..+...+..+|||=..+|..=-..+.++-..|+..+-+|..
T Consensus 9 ~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~ 88 (177)
T PF13870_consen 9 SKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHF 88 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677889999999999999999999744 4567789999999999999999998888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 224 KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 224 KqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
...-+..+.-++........+++.++.....+...+......|.
T Consensus 89 ~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 89 LSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987
No 9
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.55 E-value=0.39 Score=48.11 Aligned_cols=101 Identities=16% Similarity=0.221 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS 231 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKl 231 (348)
-..+..|..++.+|+.++.+=++.+..++....+.+.+..++.+++..+.++..-|.+...++...+..+-..+...+.+
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~ 377 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDN 377 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Confidence 34667777888888888887777777777777777777777777777777776666665555444444444444443334
Q ss_pred HHHHHHhhhHHHHHHHHHhhh
Q 018954 232 QWEAMTVSRKAEKLQEEVESM 252 (348)
Q Consensus 232 ewEa~tsn~Kve~LQ~dl~sm 252 (348)
+-++..-..+..+++.++..+
T Consensus 378 ~~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 378 AEELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444344444444443333
No 10
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.45 E-value=0.81 Score=42.23 Aligned_cols=103 Identities=29% Similarity=0.364 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHH
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSLESSKS------------QVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKI 219 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~------------em~a~~akvDELr~qlaeKe~likStq~QLsdaki 219 (348)
++.|...++++-++.++|.++|.-|..+..... +-..+..+|+.+...+.+++.-|+.+.-+|
T Consensus 74 r~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~l----- 148 (194)
T PF15619_consen 74 RERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQL----- 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 344555556666677777777776665544432 222333333333333333333333322211
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHH
Q 018954 220 KLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 264 (348)
Q Consensus 220 ~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe 264 (348)
.|+++ -..+++..-+.|+..++..+..++-||..|...+.
T Consensus 149 eL~~k-----~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 149 ELENK-----SFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 15677888899999999999999999999987763
No 11
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.18 E-value=1.2 Score=47.47 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHH
Q 018954 221 LADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQ 261 (348)
Q Consensus 221 LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~ 261 (348)
+.+.+..+..++-++..-..+...++.++..++.++..+..
T Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 929 (1179)
T TIGR02168 889 LALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444444444443333
No 12
>PRK03918 chromosome segregation protein; Provisional
Probab=95.11 E-value=4.4 Score=43.07 Aligned_cols=45 Identities=13% Similarity=0.238 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 223 DKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 223 dKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
+..+.++.++-+...-+.+...|+........+|..+....+.|.
T Consensus 388 ~l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~ 432 (880)
T PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK 432 (880)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555666666666666666666666666666655
No 13
>PRK03918 chromosome segregation protein; Provisional
Probab=95.05 E-value=1.4 Score=46.75 Aligned_cols=111 Identities=14% Similarity=0.275 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHH---hhHHHHhhhhHHHHHH
Q 018954 153 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQ---LSDAKIKLADKQAALE 229 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~Q---Lsdaki~LadKqAaLE 229 (348)
+-+..+..+++.|...+.+.+++.+.+..++.++..+.+.+.+++.++.+.+..++..+.+ |..++..+...+..++
T Consensus 169 ~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~ 248 (880)
T PRK03918 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELE 248 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666766666666666666666667777777766666666666655543 3344444444444455
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 230 KSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 230 KlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
.++-........+..++.++..++.++..+....
T Consensus 249 ~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~ 282 (880)
T PRK03918 249 SLEGSKRKLEEKIRELEERIEELKKEIEELEEKV 282 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444444445555555555555555444444
No 14
>PRK09039 hypothetical protein; Validated
Probab=95.00 E-value=2.9 Score=41.31 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHH
Q 018954 185 QVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMT 237 (348)
Q Consensus 185 em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~t 237 (348)
+|..|+.+|+.||.| +-+++.+|..++...++.++-++.|+-++-.
T Consensus 138 ~V~~L~~qI~aLr~Q-------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 138 QVELLNQQIAALRRQ-------LAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555 6666666666666666667666666655543
No 15
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.00 E-value=2.2 Score=39.62 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
+.......+|+.|..+|.+-...+..+..-+.++..+|.-...-|+.++-=+-....|+..|+.+|..+..-+-+|-...
T Consensus 85 ~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~ 164 (237)
T PF00261_consen 85 NREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASE 164 (237)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 34444556677777777777777777777777777777777777888877777888888888888888877777777666
Q ss_pred HHhh
Q 018954 264 EGLI 267 (348)
Q Consensus 264 e~it 267 (348)
++.+
T Consensus 165 ~~~~ 168 (237)
T PF00261_consen 165 EKAS 168 (237)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 5543
No 16
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=94.97 E-value=1.7 Score=41.10 Aligned_cols=119 Identities=23% Similarity=0.286 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHhhHH-
Q 018954 150 KEIEELVALREQVEDLQRKMFE----KDELLKSLESS-------------------KSQVNAVHLKLDELKRLAAEKDS- 205 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~E----KDelLkSae~~-------------------~~em~a~~akvDELr~qlaeKe~- 205 (348)
+-+..+..|..|+-.|.+.+-- .-++..++..+ -+++..++.+|.++....+..|.
T Consensus 26 ~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l~~laev~~ki~~~~~~qa~~d~~ 105 (234)
T cd07664 26 EKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQDQAFADFY 105 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4456777777777777766531 11222222111 15888999999999999999998
Q ss_pred -----------HHHHHh----------HHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHH
Q 018954 206 -----------LIKSTQ----------LQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 264 (348)
Q Consensus 206 -----------likStq----------~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe 264 (348)
+|.|+. .+...+...|.-|++.++||.|- .+..|++.++.+|...+.-.......|+
T Consensus 106 ~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~--~k~dK~~~~~~ev~~~e~~~~~a~~~fe 183 (234)
T cd07664 106 LFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYA--NKPDKLQQAKDEIKEWEAKVQQGERDFE 183 (234)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344432 36788999999999999999882 2467999999999999999999999999
Q ss_pred HhhhcC
Q 018954 265 GLIKND 270 (348)
Q Consensus 265 ~it~N~ 270 (348)
.|+++.
T Consensus 184 ~Is~~~ 189 (234)
T cd07664 184 QISKTI 189 (234)
T ss_pred HHHHHH
Confidence 999553
No 17
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.89 E-value=1.2 Score=50.44 Aligned_cols=213 Identities=21% Similarity=0.264 Sum_probs=143.8
Q ss_pred CCcchhhh------hhhhh---hhhhhHHHhhhhcCCCccc--ccceeeecCCChhhhcccCCC------cccCCCCCCC
Q 018954 50 SNVDRDLY------KDLVE---IVPLVQSLIDRKASSSFTR--RGSMIYTKTPSRESLLKKTTD------PKGRNAAQSL 112 (348)
Q Consensus 50 gnVDr~L~------~dLVE---mVPLveSlmdrk~~~sftR--r~SmiYT~aP~resl~Kk~sd------~K~~k~~qs~ 112 (348)
|+|-.-|. +-||| -||.=+|=+-|=-.-|++= .-+||.|-.|+.-.|-.-.|- .|.-+++.-+
T Consensus 317 G~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPev 396 (1041)
T KOG0243|consen 317 GEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEV 396 (1041)
T ss_pred hhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCcc
Confidence 66665544 57777 4788787776655555544 459999999996555433222 4555565555
Q ss_pred CCcccCCCCCccc------cCCCCCCCCCCCccc-cchhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-
Q 018954 113 PPKRKKDNGDKDL------GKNANSNQDSDSFSI-FSSRALVSEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKS- 184 (348)
Q Consensus 113 ~~Kkkrdpgd~d~------~k~~~~~q~~en~s~-~~s~~~~~~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~- 184 (348)
+.|--++-.=||- =|..-...+.-||-+ +-++-...++ |.-...+||++|..+|..++..|+.+...-.
T Consensus 397 NQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~---e~~~~~~~ieele~el~~~~~~l~~~~e~~~~ 473 (1041)
T KOG0243|consen 397 NQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEK---EKKEMAEQIEELEEELENLEKQLKDLTELYMN 473 (1041)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6433222111110 000000111223222 2222222222 4556788999999999999999998877632
Q ss_pred ---HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHH
Q 018954 185 ---QVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQ 261 (348)
Q Consensus 185 ---em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~ 261 (348)
.-..++.+.+.++..|..+..-+.+++.++..++-.|..+.-.+-+++-=.++.-+-+.+||..++.++-++++|-.
T Consensus 474 ~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~ 553 (1041)
T KOG0243|consen 474 QLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFE 553 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22467889999999999999999999999999999999999888887777777777799999999999999999876
Q ss_pred HHHH
Q 018954 262 IFEG 265 (348)
Q Consensus 262 ~fe~ 265 (348)
.++.
T Consensus 554 kld~ 557 (1041)
T KOG0243|consen 554 KLDR 557 (1041)
T ss_pred Hhhh
Confidence 6644
No 18
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.87 E-value=1.5 Score=41.09 Aligned_cols=113 Identities=18% Similarity=0.257 Sum_probs=62.7
Q ss_pred hhHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhH-----------HhhHH
Q 018954 150 KEIEELV-ALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQL-----------QLSDA 217 (348)
Q Consensus 150 kd~eEl~-~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~-----------QLsda 217 (348)
+.+.++. ..+.+|++|+.......+.+.++ +.++..+..+|..|+.++..=.....++.. ++.+.
T Consensus 184 ~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~---~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~ 260 (312)
T PF00038_consen 184 KNREELEEWYQSKLEELRQQSEKSSEELESA---KEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEY 260 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccccccccccccccccccchh---HhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 4444433 23556777776666555555443 333344444444444333332222333333 33334
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018954 218 KIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 265 (348)
Q Consensus 218 ki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~ 265 (348)
+..++.+.+-|.++.+++-.-..-..+|-.-==+++.||.+.++++++
T Consensus 261 ~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LLEg 308 (312)
T PF00038_consen 261 QAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLLEG 308 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence 555666666666666666666666666666666889999999988864
No 19
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.81 E-value=1.1 Score=50.58 Aligned_cols=118 Identities=19% Similarity=0.289 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---H-------------------------------------------
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESS---K------------------------------------------- 183 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~---~------------------------------------------- 183 (348)
...+++...++.+..||.++.++-.-..++.+. +
T Consensus 285 ~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~ 364 (1074)
T KOG0250|consen 285 NQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIE 364 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777888888888888777777777632 1
Q ss_pred HHHHHHHHHHHHHHHHHHhh-HHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHH-------hhhhhh
Q 018954 184 SQVNAVHLKLDELKRLAAEK-DSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEV-------ESMQGE 255 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeK-e~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl-------~sm~~E 255 (348)
+.|.++...+|.+++++++= ..+.++++.++.+..-++...+-.+|++|-.+..-..+-+++++++ .+.+.+
T Consensus 365 n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~ 444 (1074)
T KOG0250|consen 365 NSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGE 444 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 77788888888888888864 4445999999999999998888888888876666665555555544 444455
Q ss_pred HHHHHHHHHHhh
Q 018954 256 MSSFMQIFEGLI 267 (348)
Q Consensus 256 Isslm~~fe~it 267 (348)
|-++....+.++
T Consensus 445 i~~l~k~i~~~~ 456 (1074)
T KOG0250|consen 445 ILQLRKKIENIS 456 (1074)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 20
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.77 E-value=0.46 Score=54.12 Aligned_cols=110 Identities=19% Similarity=0.320 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhHHhhHHHHhhhhHHHHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLA-AEKDSLIKSTQLQLSDAKIKLADKQAAL 228 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~ql-aeKe~likStq~QLsdaki~LadKqAaL 228 (348)
.|.+.+.-|++||++|.+++-+= =+++-. ++++..++.+||++.... .-...=|++++.||---...++..++++
T Consensus 855 ~d~~~l~~~~~~ie~l~kE~e~~---qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i 930 (1293)
T KOG0996|consen 855 VDKKRLKELEEQIEELKKEVEEL---QEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAI 930 (1293)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH---HHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34556777888888888877443 233333 688899999999887654 3345568888888888888888889998
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 229 EKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 229 EKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
+.-.|-+..--+++..|..++..++.|+..|+..+
T Consensus 931 ~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~ 965 (1293)
T KOG0996|consen 931 KTSDRNIAKAQKKLSELEREIEDTEKELDDLTEEL 965 (1293)
T ss_pred hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888887777
No 21
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.70 E-value=2.3 Score=40.57 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=10.5
Q ss_pred HhhhHHHHHHHHHhhhhhhHHHHHH
Q 018954 237 TVSRKAEKLQEEVESMQGEMSSFMQ 261 (348)
Q Consensus 237 tsn~Kve~LQ~dl~sm~~EIsslm~ 261 (348)
.....+..++.++...+.+|..+..
T Consensus 200 ~~~~~~~~~~~~l~~~~~~l~~~~~ 224 (423)
T TIGR01843 200 ELERERAEAQGELGRLEAELEVLKR 224 (423)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333444444444444444444333
No 22
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.57 E-value=1.1 Score=45.00 Aligned_cols=74 Identities=20% Similarity=0.210 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHH
Q 018954 188 AVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQ 261 (348)
Q Consensus 188 a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~ 261 (348)
....+++++...+.+-+..|......++...-.+...++.+++|+-+....+.+..+|..++..+..++..+..
T Consensus 327 ~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~k 400 (562)
T PHA02562 327 EIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVK 400 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555666666666777777777777777778877777777888888888888888775443
No 23
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.52 E-value=1.6 Score=46.46 Aligned_cols=82 Identities=22% Similarity=0.315 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--------------hHHhhHHHHhhhh
Q 018954 158 LREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKST--------------QLQLSDAKIKLAD 223 (348)
Q Consensus 158 LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likSt--------------q~QLsdaki~Lad 223 (348)
|+.|++..+ -|+++|++-...++.++..++..|+.|+.+|.....=+..+ ..+...-+..+++
T Consensus 141 lQ~qlE~~q---kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e 217 (546)
T PF07888_consen 141 LQNQLEECQ---KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAE 217 (546)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555543 34555666666666555555555555555554433322222 2222333344455
Q ss_pred HHHHHHHHHHHHHHhhhHH
Q 018954 224 KQAALEKSQWEAMTVSRKA 242 (348)
Q Consensus 224 KqAaLEKlewEa~tsn~Kv 242 (348)
..+-+.+||=++++-+.|.
T Consensus 218 ~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 218 ARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555665555555554
No 24
>PRK02224 chromosome segregation protein; Provisional
Probab=94.52 E-value=1.2 Score=47.42 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEK--DELLKSLESSKSQVNAVHLKLDE 195 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EK--DelLkSae~~~~em~a~~akvDE 195 (348)
-...++.|+++|+..|.++ .++...+.....++..+..++++
T Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~l~el~~~i~~ 224 (880)
T PRK02224 181 VLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIER 224 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777665 33333333333333333333333
No 25
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.46 E-value=1.7 Score=38.14 Aligned_cols=66 Identities=20% Similarity=0.234 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEV 249 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl 249 (348)
..+-.++.+|.-|-.+|..-+.-++.|.-.|.++.+......--+..|+-+...-.+|.+.|....
T Consensus 73 ~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 73 SNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333355555555555555556666666666666666666655555556666666666666555444
No 26
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.45 E-value=4 Score=37.62 Aligned_cols=113 Identities=15% Similarity=0.362 Sum_probs=87.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhH
Q 018954 149 EKEIEELVALREQVEDLQRKMFEKDELLKSLES----SKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADK 224 (348)
Q Consensus 149 ~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~----~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadK 224 (348)
-.+-+-+..|.+||.+++++....+-.+..+.. +..-+..+...+.+|++++..=+ .-...|..+|..+...
T Consensus 23 ~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~----kdK~~L~~~k~rl~~~ 98 (201)
T PF13851_consen 23 LNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE----KDKQSLQNLKARLKEL 98 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 345567889999999999998888777665544 35677788999999999998633 4455788899999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH-HHHHHHHH
Q 018954 225 QAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS-SFMQIFEG 265 (348)
Q Consensus 225 qAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIs-slm~~fe~ 265 (348)
+--|..|+||--.-..++.+|+.+-+.+..-+. ++..+.++
T Consensus 99 ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk 140 (201)
T PF13851_consen 99 EKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQK 140 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888777765444 33333333
No 27
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.31 E-value=2.9 Score=40.58 Aligned_cols=60 Identities=22% Similarity=0.286 Sum_probs=46.1
Q ss_pred HHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018954 206 LIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 265 (348)
Q Consensus 206 likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~ 265 (348)
-+.++..+|...+..++.++..|+.++-+....+.+++.+..+...+..+|+.+..+.+.
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~ 269 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREE 269 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777787888888888888888888888888888888888877766653
No 28
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.16 E-value=1.7 Score=41.46 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=7.6
Q ss_pred HHHhhhhhhHHHHHHHH
Q 018954 247 EEVESMQGEMSSFMQIF 263 (348)
Q Consensus 247 ~dl~sm~~EIsslm~~f 263 (348)
.++...+.+|..+...+
T Consensus 246 ~~l~~~~~~l~~~~~~l 262 (423)
T TIGR01843 246 EELTEAQARLAELRERL 262 (423)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 29
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.12 E-value=2.1 Score=42.10 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHH----HHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHH
Q 018954 183 KSQVNAVHLKLDELKRLAAEKDS----LIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSS 258 (348)
Q Consensus 183 ~~em~a~~akvDELr~qlaeKe~----likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIss 258 (348)
...-..+..++..|++...+-+. .+..+..+|...+..+..|+.-++.++-++...+.+++...++.+..+.+|+.
T Consensus 178 ~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 178 RDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777544 66667777777777777777777777777777777777777777777777776
Q ss_pred HHHHHHH
Q 018954 259 FMQIFEG 265 (348)
Q Consensus 259 lm~~fe~ 265 (348)
...+++.
T Consensus 258 ae~~~~~ 264 (312)
T smart00787 258 AEKKLEQ 264 (312)
T ss_pred HHHHHHh
Confidence 6665543
No 30
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.06 E-value=1.2 Score=41.92 Aligned_cols=96 Identities=26% Similarity=0.341 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQW 233 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlew 233 (348)
||..|.-|+-|.|-.+.-|+ ++|..|.+.+-+++.++..++.-+..++. .+-.|++.||..|-
T Consensus 11 EIsLLKqQLke~q~E~~~K~----------~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~-------~~~~K~~ELE~ce~ 73 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKD----------SEIVSLRAQLRELRAELRNKESQIQELQD-------SLRTKQLELEVCEN 73 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------HHHHhhHhHHHhHH
Confidence 67778888887777777665 45666666677777777666665555544 44568899999999
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHh
Q 018954 234 EAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 266 (348)
Q Consensus 234 Ea~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~i 266 (348)
|+-.....++-|++.+..++.||..|..-+..+
T Consensus 74 ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 74 ELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 999988889999999999999999999888776
No 31
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.01 E-value=4.4 Score=39.04 Aligned_cols=105 Identities=16% Similarity=0.283 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------HHHHHHHhHHhhHHHHh
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEK---------DSLIKSTQLQLSDAKIK 220 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeK---------e~likStq~QLsdaki~ 220 (348)
..+++|..++++++.+.+.+.+++..++.++ +++..+...|++++.+...= +.-+..++.++.-|+-.
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le---~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r 104 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLE---NQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKER 104 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888877776655544 44555555555555544332 22233344444444444
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 018954 221 LADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 257 (348)
Q Consensus 221 LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIs 257 (348)
++...-.|..+.-+.-...++.+.|++.+..++..+.
T Consensus 105 ~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~ 141 (239)
T COG1579 105 INSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA 141 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333333333333333333444444433333333
No 32
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.92 E-value=2.2 Score=48.44 Aligned_cols=33 Identities=33% Similarity=0.488 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESS 182 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~ 182 (348)
+.-+++-.+.+.|++++..+-|++.+++..+.-
T Consensus 738 ~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~ 770 (1174)
T KOG0933|consen 738 KLLDDLKELLEEVEESEQQIKEKERALKKCEDK 770 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777777777766554
No 33
>PRK02224 chromosome segregation protein; Provisional
Probab=93.79 E-value=2.1 Score=45.75 Aligned_cols=15 Identities=20% Similarity=0.062 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHh
Q 018954 304 EEAREAYITAVAMAK 318 (348)
Q Consensus 304 E~aR~aY~aAvaaAK 318 (348)
+.....|-.++..++
T Consensus 432 ~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 432 EATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444555554
No 34
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.79 E-value=5.3 Score=36.51 Aligned_cols=108 Identities=18% Similarity=0.316 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhH
Q 018954 150 KEIEELVALREQVEDLQR-----KMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADK 224 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqk-----KL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadK 224 (348)
.-+++...|+.+|+++=. .......+-..++....++..+...++.+++++.++-..|...+.+|+..+..|...
T Consensus 31 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~ 110 (302)
T PF10186_consen 31 QLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSAS 110 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777665 666777777777777777777777777777777777777777777777777766622
Q ss_pred H-------HHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 018954 225 Q-------AALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 257 (348)
Q Consensus 225 q-------AaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIs 257 (348)
. ..+++++-++.....++..++..+...+..+-
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~ 150 (302)
T PF10186_consen 111 QDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLI 150 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22333333444444444444444444444433
No 35
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=93.72 E-value=2.7 Score=39.96 Aligned_cols=84 Identities=20% Similarity=0.368 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHH------------HHHHh----------HHhhHHHHhhhhHHHHHHHHHHHHHHhhhH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSL------------IKSTQ----------LQLSDAKIKLADKQAALEKSQWEAMTVSRK 241 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~l------------ikStq----------~QLsdaki~LadKqAaLEKlewEa~tsn~K 241 (348)
+.+..++.+|.++....++.|.+ |.|+. .+.++++..|.-|++.++||.|- .+..|
T Consensus 83 s~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~--~~~dK 160 (234)
T cd07665 83 SQLAEVEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWA--NKPDK 160 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchH
Confidence 68889999999999999998863 44442 46889999999999999999883 35689
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhc
Q 018954 242 AEKLQEEVESMQGEMSSFMQIFEGLIKN 269 (348)
Q Consensus 242 ve~LQ~dl~sm~~EIsslm~~fe~it~N 269 (348)
+..++.+|...+........-|+.|+++
T Consensus 161 ~~~a~~Ev~e~e~k~~~a~~~fe~is~~ 188 (234)
T cd07665 161 LQQAKDEIAEWESRVTQYERDFERISAT 188 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999844
No 36
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.34 E-value=5.1 Score=41.59 Aligned_cols=109 Identities=25% Similarity=0.334 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhh-------
Q 018954 153 EELVALREQVEDLQRKM----FEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKL------- 221 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL----~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~L------- 221 (348)
..+.....++++.+..| .|-..+-.+++++..++.-....+..++.....-...|.+++.+|...+..|
T Consensus 281 ~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e 360 (522)
T PF05701_consen 281 SSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEE 360 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhh
Confidence 34666666777666666 4666777888888999999999999999999999999999988888777766
Q ss_pred -------hhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHH
Q 018954 222 -------ADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQ 261 (348)
Q Consensus 222 -------adKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~ 261 (348)
.++..+|+++.-|+-.-...++..+.++..+..||.....
T Consensus 361 ~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka 407 (522)
T PF05701_consen 361 EKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKA 407 (522)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888777777777777777777777776664433
No 37
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=93.09 E-value=4.8 Score=38.25 Aligned_cols=101 Identities=17% Similarity=0.313 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHH
Q 018954 155 LVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWE 234 (348)
Q Consensus 155 l~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewE 234 (348)
|..||.++.+|++. |.+++..++.+.++=.-|..--.|+...+.||.+.+. +|..-+.....+.+-+..++-|
T Consensus 3 i~~ir~K~~~lek~---k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~e----eLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 3 IKEIRNKTLELEKL---KNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVE----ELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 56688888888876 5678888888887777777777777777889988886 6777888888889999999988
Q ss_pred HHHhhhHHHHHHHHHhhhhhhHHHHHHH
Q 018954 235 AMTVSRKAEKLQEEVESMQGEMSSFMQI 262 (348)
Q Consensus 235 a~tsn~Kve~LQ~dl~sm~~EIsslm~~ 262 (348)
-...-.++.++++++.-+..+|..++.-
T Consensus 76 r~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 76 RNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999998888888777
No 38
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=92.99 E-value=1.9 Score=38.85 Aligned_cols=96 Identities=21% Similarity=0.188 Sum_probs=72.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHH-HHHHHHHHHHHHhhhHHHHH
Q 018954 167 RKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQ-AALEKSQWEAMTVSRKAEKL 245 (348)
Q Consensus 167 kKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKq-AaLEKlewEa~tsn~Kve~L 245 (348)
..|.++|.-|.++=....+-..++++|..|+.++..+|..|+.+..+|.++...|...- -+-+++ ++..+.+
T Consensus 5 ~~L~~~d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~~~~~~~~-----~~~~~~~-- 77 (188)
T PF10018_consen 5 EDLIEADDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLPDQADEKL-----KSIPKAE-- 77 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----ccccccc--
Confidence 45677887777776777888899999999999999999999999999999999887654 111112 2333333
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhhcCCCCC
Q 018954 246 QEEVESMQGEMSSFMQIFEGLIKNDSTVN 274 (348)
Q Consensus 246 Q~dl~sm~~EIsslm~~fe~it~N~S~~~ 274 (348)
.-.+...-|...=.+|+++.+.+.
T Consensus 78 -----~~~v~~~eLL~YA~rISk~t~~p~ 101 (188)
T PF10018_consen 78 -----KRPVDYEELLSYAHRISKFTSAPP 101 (188)
T ss_pred -----cCCCCHHHHHHHHHHHHHhcCCCC
Confidence 334446678888899999888844
No 39
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.98 E-value=5.6 Score=41.32 Aligned_cols=58 Identities=26% Similarity=0.287 Sum_probs=42.3
Q ss_pred HHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 206 LIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 206 likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
...+++..|..++..|.+.+..|++..-|+..-...|+.|+.+|.....+|..+..-.
T Consensus 275 ~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e 332 (522)
T PF05701_consen 275 KSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKERE 332 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566777777777777888888888888888888888887777777766544
No 40
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.96 E-value=3.8 Score=46.02 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=30.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 216 DAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 216 daki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
+.+-..+++.-.||+++++.=.-++|.+....-+++|+.|...+.-.|+.+.
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq 514 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQ 514 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555556666666666666666666666666666665555555544
No 41
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.79 E-value=2.1 Score=48.59 Aligned_cols=71 Identities=14% Similarity=0.277 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHH---hHHhhHHHHhhh
Q 018954 153 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDEL-------KRLAAEKDSLIKST---QLQLSDAKIKLA 222 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDEL-------r~qlaeKe~likSt---q~QLsdaki~La 222 (348)
.|+..|+.||++|..++..-..- ++++....++.++..+++.+ ..+...+..-|+.+ ..++.+.+.+|+
T Consensus 799 ~ei~~l~~qie~l~~~l~~~~~~-~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~ 877 (1311)
T TIGR00606 799 MELKDVERKIAQQAAKLQGSDLD-RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG 877 (1311)
T ss_pred HHHHHHHHHHHHHHHHhcccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544433221 24444444444444444444 66666666666666 444444455554
Q ss_pred hH
Q 018954 223 DK 224 (348)
Q Consensus 223 dK 224 (348)
+.
T Consensus 878 ~~ 879 (1311)
T TIGR00606 878 TN 879 (1311)
T ss_pred HH
Confidence 43
No 42
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.71 E-value=3.4 Score=49.57 Aligned_cols=80 Identities=19% Similarity=0.285 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
.++..+...+++...+.++.+.-.+.++..+.+-+..+.|....+.|++.|.-+..+++..|++++..++--|+.|...-
T Consensus 908 ~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kek 987 (1930)
T KOG0161|consen 908 KELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEK 987 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666777777777777777777888888888888888899999999999999999999998888888776543
No 43
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.68 E-value=6.3 Score=42.07 Aligned_cols=28 Identities=25% Similarity=0.218 Sum_probs=14.0
Q ss_pred eeecCCChhh-hcccCCCcccCCCCCCCCC
Q 018954 86 IYTKTPSRES-LLKKTTDPKGRNAAQSLPP 114 (348)
Q Consensus 86 iYT~aP~res-l~Kk~sd~K~~k~~qs~~~ 114 (348)
.|=|-|.-+. +. -|.+-+|.-...|+|=
T Consensus 80 yyLPk~~~e~Yqf-cYv~~~g~V~G~S~pF 108 (546)
T PF07888_consen 80 YYLPKDDDEFYQF-CYVDQKGEVRGASTPF 108 (546)
T ss_pred ccCCCCCCCeEEE-EEECCCccEEEecCCc
Confidence 4666664332 33 3345555555555554
No 44
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.66 E-value=4.7 Score=45.40 Aligned_cols=10 Identities=40% Similarity=0.368 Sum_probs=6.5
Q ss_pred HHHHHHHHHh
Q 018954 309 AYITAVAMAK 318 (348)
Q Consensus 309 aY~aAvaaAK 318 (348)
.|..||.+|=
T Consensus 530 ~y~~Aie~al 539 (1163)
T COG1196 530 KYETALEAAL 539 (1163)
T ss_pred HHHHHHHHHc
Confidence 5777776653
No 45
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=92.62 E-value=5 Score=45.23 Aligned_cols=73 Identities=19% Similarity=0.331 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEM 256 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EI 256 (348)
.+|..+..+++++..++..=+.-+.+.+.++...+..+...++.+..++-++.....+.++|+..+..+..++
T Consensus 828 ~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~ 900 (1163)
T COG1196 828 QEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESEL 900 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333344444444444444444444444444444444444444444444433333
No 46
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.32 E-value=8.9 Score=37.61 Aligned_cols=108 Identities=26% Similarity=0.389 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHh-----------------
Q 018954 153 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIK----STQ----------------- 211 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~lik----Stq----------------- 211 (348)
.||-.|..||++++.|.-++++ -...+..+|+.++.+|++++..+.++.-+++ ++|
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~---~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~SkS 128 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQK---EIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILNSKS 128 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccCc
Confidence 4788899999999999877764 5667788899999999999888888765543 111
Q ss_pred ----------------------HHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 212 ----------------------LQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 212 ----------------------~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
.++-+-|..|-+||++|++-.-++..-.+..+.++.+|.+-..|...++...
T Consensus 129 fsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~ 202 (265)
T COG3883 129 FSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAAL 202 (265)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233445567777777777666666666666655555555555544444433
No 47
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=92.23 E-value=10 Score=37.95 Aligned_cols=82 Identities=23% Similarity=0.277 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhh---------------------HH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSR---------------------KA 242 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~---------------------Kv 242 (348)
.+|+.+..+-+-|-++|+.=++=+.|+.-+||.+.--|.+|-.+||-+|+++-..-+ |-
T Consensus 137 ~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kq 216 (305)
T PF14915_consen 137 SDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQ 216 (305)
T ss_pred chHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 466777777788999999999999999999999999999999999999887655433 45
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHH
Q 018954 243 EKLQEEVESMQGEMSSFMQIFEG 265 (348)
Q Consensus 243 e~LQ~dl~sm~~EIsslm~~fe~ 265 (348)
+.|++-|..++.|=-.|+++++.
T Consensus 217 es~eERL~QlqsEN~LLrQQLdd 239 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQLDD 239 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777778777754
No 48
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.22 E-value=4.8 Score=48.39 Aligned_cols=143 Identities=21% Similarity=0.296 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhh-------hHHH
Q 018954 158 LREQVEDLQRKMFEKDELLKSLESS----KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLA-------DKQA 226 (348)
Q Consensus 158 LreQVeeLqkKL~EKDelLkSae~~----~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~La-------dKqA 226 (348)
|.+.+.+|+..|.+.++-++++.-. ..+|..+...+.+-++...+-|..++..-.+|.+++-.+. +.+.
T Consensus 990 lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~ 1069 (1930)
T KOG0161|consen 990 LEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDN 1069 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 5555555555555555555554433 2555555556665555566666555555555555444444 4444
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhhhcCCCCCCCCCCCCCccccCCCCCCCCCChHHHHHHHHH
Q 018954 227 ALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKNDSTVNADDDYDIKPYYSDYLSDIDDLDDVEMQRMEEA 306 (348)
Q Consensus 227 aLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it~N~S~~~~ded~d~~~~~~e~l~~~de~~~~e~ekmE~a 306 (348)
.|.+.+||+=.-+.|+++++..+.-++-.|..|......|. + .-+-...-..|+|.+
T Consensus 1070 ~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~---------e--------------~le~er~~r~K~ek~ 1126 (1930)
T KOG0161|consen 1070 QLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELE---------E--------------ELEAERASRAKAERQ 1126 (1930)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---------H--------------HHHHHHHHHHHHHHH
Confidence 44445555554455555444444444444444444443333 1 111224456677777
Q ss_pred HHHHHHHHHHHhhcCCH
Q 018954 307 REAYITAVAMAKEKQDE 323 (348)
Q Consensus 307 R~aY~aAvaaAKenp~e 323 (348)
|+.....|.+-++.-++
T Consensus 1127 r~dL~~ele~l~~~Lee 1143 (1930)
T KOG0161|consen 1127 RRDLSEELEELKEELEE 1143 (1930)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777766655444
No 49
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.17 E-value=9.1 Score=37.25 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHh
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTV 238 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~ts 238 (348)
.+++++++.|.++..+++.+..-+...+.||..-+..+.+..+...+++=++...
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444444433
No 50
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.08 E-value=1.2 Score=40.06 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQW 233 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlew 233 (348)
.+...+..++..|..++.+|...+..++.++.--+|.+.-....+.+|+-
T Consensus 123 ~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 123 AELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555444444444443
No 51
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=91.95 E-value=2.4 Score=39.38 Aligned_cols=63 Identities=21% Similarity=0.247 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhhHHHHHHHhHH
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQ------------------VNAVHLKLDELKRLAAEKDSLIKSTQLQ 213 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~e------------------m~a~~akvDELr~qlaeKe~likStq~Q 213 (348)
+.++-...++++.++.+|-+.+..+..++.-..- +..+..+++++.+.+-+-+.-++.+...
T Consensus 7 ~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r 86 (237)
T PF00261_consen 7 KDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENR 86 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4567777778888888887777777666654311 1133455566666666655555555444
Q ss_pred h
Q 018954 214 L 214 (348)
Q Consensus 214 L 214 (348)
+
T Consensus 87 ~ 87 (237)
T PF00261_consen 87 E 87 (237)
T ss_dssp H
T ss_pred H
Confidence 3
No 52
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=91.90 E-value=10 Score=34.97 Aligned_cols=102 Identities=23% Similarity=0.353 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHhHHhhHHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLA-----------AEKDSLIKSTQLQLSDAK 218 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~ql-----------aeKe~likStq~QLsdak 218 (348)
.=++-|..++++|++|+++|..=+.--.++..++..+..+..+|..|+.+. .|||.|-.--..=+++.+
T Consensus 59 ~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evq 138 (201)
T PF13851_consen 59 RLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQ 138 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778899999999999997655555688888888888888887776554 456666666666666777
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHH
Q 018954 219 IKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQ 261 (348)
Q Consensus 219 i~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~ 261 (348)
.+.+-|...|| +|+..|...+..-++++++...
T Consensus 139 Qk~~~kn~lLE----------kKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 139 QKTGLKNLLLE----------KKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666666 5788888888888888876554
No 53
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.64 E-value=4.9 Score=45.76 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=27.1
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 220 KLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 220 ~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
-+.+.+..+++++-++.+-..+.+.++.+...++.+|+.|....
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki 866 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKT 866 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666664433
No 54
>PRK01156 chromosome segregation protein; Provisional
Probab=91.62 E-value=21 Score=38.62 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 018954 178 SLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVES 251 (348)
Q Consensus 178 Sae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~s 251 (348)
.++....+...+..+++.++..+++.+.-++....++...+..+...+.++++++-=-+. ...+.+++.-++.
T Consensus 675 ~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~~~~~-~~~l~~~r~~l~k 747 (895)
T PRK01156 675 RINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKKA-IGDLKRLREAFDK 747 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhh
Confidence 334445666666667777777777777777777777666666666655555543332121 1234556666664
No 55
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=91.57 E-value=0.93 Score=44.64 Aligned_cols=109 Identities=28% Similarity=0.384 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhH----------------H
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSD----------------A 217 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsd----------------a 217 (348)
.|..|.|++-.||+++.|| ++-++-.+.....++.++++||.+|.++|.||+--++=|-. .
T Consensus 120 ~lee~eE~~~~~~re~~eK---~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~ 196 (302)
T PF09738_consen 120 KLEELEETLAQLQREYREK---IRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHP 196 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCC
Confidence 4444555555555555433 45567778899999999999999999999999754443332 2
Q ss_pred HHhhhhHHHH--HHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 218 KIKLADKQAA--LEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 218 ki~LadKqAa--LEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
++-+.-..++ |+.. +-=+=--++-+|-++=..|..+|.-|..+++...
T Consensus 197 ~~~~vs~e~a~~L~~a--G~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~ 246 (302)
T PF09738_consen 197 KRALVSQEAAQLLESA--GDGSLDVRLKKLADEKEELLEQVRKLKLQLEERQ 246 (302)
T ss_pred cccccchhhhhhhccc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222211 1111 0000012555666677788888888888886654
No 56
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=91.32 E-value=11 Score=37.90 Aligned_cols=122 Identities=17% Similarity=0.331 Sum_probs=83.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHH-
Q 018954 149 EKEIEELVALREQVEDLQRKMFEKDELL-KSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQA- 226 (348)
Q Consensus 149 ~kd~eEl~~LreQVeeLqkKL~EKDelL-kSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqA- 226 (348)
.-.++|-.+|++.+.-==-.|-++-++| ..+.......|.+.-++-..+-.|.||--++.++|-.|+.++-.+-++..
T Consensus 122 qr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m 201 (305)
T PF14915_consen 122 QRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHM 201 (305)
T ss_pred HHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666543333334444444 23444567788888888899999999999999999888877766554432
Q ss_pred ----------------HH----HHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhhhcC
Q 018954 227 ----------------AL----EKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKND 270 (348)
Q Consensus 227 ----------------aL----EKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it~N~ 270 (348)
+| -+||-|-|-=-.-.++.+...++.+--|...+..|..|..+-
T Consensus 202 ~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L 265 (305)
T PF14915_consen 202 YQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKL 265 (305)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 32 237778777777778888888888877777777776666543
No 57
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.24 E-value=1.2 Score=40.10 Aligned_cols=97 Identities=21% Similarity=0.292 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQW 233 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlew 233 (348)
-+..|++.+.+|++ +-..+..+++.+..++.+++..+.++..-|..++.++. ..+..+..++-
T Consensus 75 ~~~~l~~ELael~r----------~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~-------~L~~~~~~l~~ 137 (194)
T PF08614_consen 75 KLAKLQEELAELYR----------SKGELAQQLVELNDELQELEKELSEKERRLAELEAELA-------QLEEKIKDLEE 137 (194)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred cccccccccccccc----------ccccccccccccccccchhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 34555555555544 33445566666666666666666666555555444433 33333344444
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 234 EAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 234 Ea~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
++...++-++.|+.++.+++-+++.+-..++++.
T Consensus 138 ~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 138 ELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555556666666666666666666665554
No 58
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.13 E-value=3.3 Score=44.07 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSLESS 182 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~ 182 (348)
.-|+..|+++|++|++++.++...+..++.-
T Consensus 112 e~ei~kl~~e~~elr~~~~~~~k~~~~~re~ 142 (546)
T KOG0977|consen 112 EIEITKLREELKELRKKLEKAEKERRGAREK 142 (546)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3456666666666666666665555555443
No 59
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.01 E-value=4.1 Score=43.17 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHH-hhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhH---HHHHHHHHhhhhhhHHHH
Q 018954 184 SQVNAVHLKLDELKRLAA-EKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRK---AEKLQEEVESMQGEMSSF 259 (348)
Q Consensus 184 ~em~a~~akvDELr~qla-eKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~K---ve~LQ~dl~sm~~EIssl 259 (348)
-+|.++++++++|++++. +...++.+++.++..++......++.+.+++-.+..-+.+ ..+||-+++.-+.-...|
T Consensus 316 P~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~l 395 (754)
T TIGR01005 316 PRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESY 395 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888887764 4677778888888888888888888888887777655443 334555555555555555
Q ss_pred HHHHHHh
Q 018954 260 MQIFEGL 266 (348)
Q Consensus 260 m~~fe~i 266 (348)
...++.+
T Consensus 396 l~r~~e~ 402 (754)
T TIGR01005 396 LTNYRQA 402 (754)
T ss_pred HHHHHHH
Confidence 5555443
No 60
>PRK01156 chromosome segregation protein; Provisional
Probab=91.00 E-value=11 Score=40.64 Aligned_cols=18 Identities=11% Similarity=0.313 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHhhhhhhH
Q 018954 239 SRKAEKLQEEVESMQGEM 256 (348)
Q Consensus 239 n~Kve~LQ~dl~sm~~EI 256 (348)
..+++.++.++..+..++
T Consensus 701 ~~~i~~l~~~~~~l~eel 718 (895)
T PRK01156 701 ESTIEILRTRINELSDRI 718 (895)
T ss_pred HHHHHHHHhhHHHHHHHH
Confidence 333333333333333333
No 61
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.79 E-value=7.4 Score=38.99 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=5.2
Q ss_pred hhhHHHhhhh
Q 018954 65 PLVQSLIDRK 74 (348)
Q Consensus 65 PLveSlmdrk 74 (348)
++++..+++-
T Consensus 81 ~v~~~vi~~l 90 (498)
T TIGR03007 81 PNLEKVIRML 90 (498)
T ss_pred HHHHHHHHHc
Confidence 4555555544
No 62
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=90.78 E-value=7.1 Score=43.29 Aligned_cols=114 Identities=21% Similarity=0.246 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHH---------HHhhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhhHHHHHHHhH
Q 018954 153 EELVALREQVEDLQR---------KMFEKDELLKSLESS-----------KSQVNAVHLKLDELKRLAAEKDSLIKSTQL 212 (348)
Q Consensus 153 eEl~~LreQVeeLqk---------KL~EKDelLkSae~~-----------~~em~a~~akvDELr~qlaeKe~likStq~ 212 (348)
.|--+||-++.-|++ .|.||||++.-+-.- .+.|.-|.||+-+--..++.+--+|.-+++
T Consensus 423 kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~s 502 (961)
T KOG4673|consen 423 KERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQS 502 (961)
T ss_pred HhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHH
Confidence 355567777664443 466799988765322 377888999999888888888899999999
Q ss_pred HhhHHHHhhhhHHHHHHHHHHHHHHh-hhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 213 QLSDAKIKLADKQAALEKSQWEAMTV-SRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 213 QLsdaki~LadKqAaLEKlewEa~ts-n~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
++.--|.-|++|.+ .||+..|.... +--+.+-..+.+..++.|..|......|-
T Consensus 503 E~~~lk~il~~Kee-~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~q 557 (961)
T KOG4673|consen 503 EENKLKSILRDKEE-TEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQ 557 (961)
T ss_pred HHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999975 57777775432 22233333444444555554444444433
No 63
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.77 E-value=11 Score=33.17 Aligned_cols=16 Identities=6% Similarity=0.152 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHHHh
Q 018954 223 DKQAALEKSQWEAMTV 238 (348)
Q Consensus 223 dKqAaLEKlewEa~ts 238 (348)
+.+..++.+.|++...
T Consensus 155 ~~~~~~~~~~~~~~~~ 170 (191)
T PF04156_consen 155 DSREEVQELRSQLERL 170 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 64
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.65 E-value=27 Score=38.15 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhhcC--CHHHHHHHHHHHHhhhhh
Q 018954 303 MEEAREAYITAVAMAKEKQ--DEESMATAARARLHLQSF 339 (348)
Q Consensus 303 mE~aR~aY~aAvaaAKenp--~eEsl~~aAeaR~~LQ~f 339 (348)
.+....+-+.||+|.+++- -|.+ +.||-|..|--|
T Consensus 585 ~~~~~e~L~~aL~amqdk~~~LE~s--LsaEtriKldLf 621 (697)
T PF09726_consen 585 SEKDTEVLMSALSAMQDKNQHLENS--LSAETRIKLDLF 621 (697)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHH
Confidence 3556778889999988764 3444 456667666555
No 65
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=90.18 E-value=16 Score=39.34 Aligned_cols=85 Identities=21% Similarity=0.295 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhH----------Hhh
Q 018954 150 KEIEELVALREQVEDLQRKMFE----KDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQL----------QLS 215 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~E----KDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~----------QLs 215 (348)
.-.+|+.+|+.+++.|..+|-. ++.+=+-....+.++..+..++.++.....+..+|+..+++ |=+
T Consensus 84 ~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~ 163 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNR 163 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHH
Confidence 4456788888888888876544 33332222344678888899999999999999999887773 445
Q ss_pred HHHHhhhhHHHHHHHHHHH
Q 018954 216 DAKIKLADKQAALEKSQWE 234 (348)
Q Consensus 216 daki~LadKqAaLEKlewE 234 (348)
+-|..|+++|-+.-+|-.+
T Consensus 164 eLK~QL~Elq~~Fv~ltne 182 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNE 182 (617)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5677777777766665444
No 66
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=89.91 E-value=7.3 Score=39.01 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhh
Q 018954 156 VALREQVEDLQRKMFEKDELLKSLESS------------KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLS 215 (348)
Q Consensus 156 ~~LreQVeeLqkKL~EKDelLkSae~~------------~~em~a~~akvDELr~qlaeKe~likStq~QLs 215 (348)
.-|..|+..++++|.+.+..|+.-... .++++.++.++..++.++++-++.+.+++.+|.
T Consensus 164 ~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~ 235 (498)
T TIGR03007 164 RFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLG 235 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667777777777777777665432 355666666666666666666666666665544
No 67
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=89.62 E-value=17 Score=40.34 Aligned_cols=114 Identities=21% Similarity=0.321 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHhhhH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHhHHhhHHHHhhh
Q 018954 154 ELVALREQVEDLQRKMFEKD-ELLK---SLESSKSQVNAVHLKLDELKRLAAEKDSL-------IKSTQLQLSDAKIKLA 222 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKD-elLk---Sae~~~~em~a~~akvDELr~qlaeKe~l-------ikStq~QLsdaki~La 222 (348)
....+...++.+.-.|..|+ |++. -++..-++-+....-||-|+-+++.|+.= |..+...|..++.+|.
T Consensus 281 ~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~ 360 (775)
T PF10174_consen 281 HSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLE 360 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34455566888888888888 3222 22223344444466667777666666543 3445566777888888
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 223 DKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 223 dKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
-|++.+++++-|.-+-.-.+++|.+-++..+.+|+.|..-+++|.
T Consensus 361 kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Le 405 (775)
T PF10174_consen 361 KKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLE 405 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888887776655
No 68
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.52 E-value=15 Score=42.07 Aligned_cols=115 Identities=23% Similarity=0.325 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---------------------------------HHHHHHHHHHHHHH
Q 018954 151 EIEELVALREQVEDLQRKMFEKDELLKSLESSK---------------------------------SQVNAVHLKLDELK 197 (348)
Q Consensus 151 d~eEl~~LreQVeeLqkKL~EKDelLkSae~~~---------------------------------~em~a~~akvDELr 197 (348)
+.+.+...+-|++.-|+.|..=+..|++++.+. .++..+...|.|++
T Consensus 675 ~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~ 754 (1174)
T KOG0933|consen 675 QLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESE 754 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHH
Confidence 344677777777777777777777777777663 66777778888888
Q ss_pred HHHHhhHHHHHHHhHHhhHHHHh-----------hhhHHHHHHHHHH-------HHHHhhhHHHHHHHHHhhhhhhHHHH
Q 018954 198 RLAAEKDSLIKSTQLQLSDAKIK-----------LADKQAALEKSQW-------EAMTVSRKAEKLQEEVESMQGEMSSF 259 (348)
Q Consensus 198 ~qlaeKe~likStq~QLsdaki~-----------LadKqAaLEKlew-------Ea~tsn~Kve~LQ~dl~sm~~EIssl 259 (348)
.++-+++..++..+...+.-..+ |.|.+.-+..+.. +...+..=++.||-+.+.|+.||++.
T Consensus 755 ~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~ 834 (1174)
T KOG0933|consen 755 QQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSL 834 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88989988888877766433222 2222222222222 22223333556777888888888877
Q ss_pred HHHHHH
Q 018954 260 MQIFEG 265 (348)
Q Consensus 260 m~~fe~ 265 (348)
..+++.
T Consensus 835 k~~l~~ 840 (1174)
T KOG0933|consen 835 KQQLEQ 840 (1174)
T ss_pred HHHHHH
Confidence 776654
No 69
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=89.25 E-value=4.4 Score=38.28 Aligned_cols=86 Identities=20% Similarity=0.220 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHH
Q 018954 182 SKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQ 261 (348)
Q Consensus 182 ~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~ 261 (348)
-.++|+.|.-++-|.+-+++-|+.=|-|+-.||.+++..|..+...+-.++--+-+.+...+..++++.....|++.|+.
T Consensus 8 k~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLre 87 (202)
T PF06818_consen 8 KSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLRE 87 (202)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhh
Confidence 35789999999999999999999999999999999999999999999999988888999999999999999999988888
Q ss_pred HHHHhh
Q 018954 262 IFEGLI 267 (348)
Q Consensus 262 ~fe~it 267 (348)
.+..|.
T Consensus 88 kl~~le 93 (202)
T PF06818_consen 88 KLGQLE 93 (202)
T ss_pred hhhhhH
Confidence 775543
No 70
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=89.10 E-value=2.9 Score=41.60 Aligned_cols=85 Identities=25% Similarity=0.265 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHH-------HHHHHHHHh-hHHHHHHHhHHhhHHHHhh
Q 018954 154 ELVALREQVEDLQRKMFEKDELLK----SLESSKSQVNAVHLKL-------DELKRLAAE-KDSLIKSTQLQLSDAKIKL 221 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLk----Sae~~~~em~a~~akv-------DELr~qlae-Ke~likStq~QLsdaki~L 221 (348)
++..-..||..|...|..|-+=+. .+.++.+++..++.++ ++|.+.|.. |++.- .++.+|++-+-+-
T Consensus 207 QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~-~L~aEL~elqdkY 285 (306)
T PF04849_consen 207 QLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQR-QLQAELQELQDKY 285 (306)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 344444566666666655543221 1222233333333332 344433322 33332 2456666666666
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 018954 222 ADKQAALEKSQWEAMTVS 239 (348)
Q Consensus 222 adKqAaLEKlewEa~tsn 239 (348)
++-.++|.-.|=|+++-.
T Consensus 286 ~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 286 AECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 666666666666665543
No 71
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.06 E-value=25 Score=34.77 Aligned_cols=114 Identities=16% Similarity=0.191 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHH-----------HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLK-SLESSK-----------SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDA 217 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLk-Sae~~~-----------~em~a~~akvDELr~qlaeKe~likStq~QLsda 217 (348)
.|.+-|..-.+.|+++.-+|.+|-..|+ .+.++. +++..++++|.++..++..|-..+...+.||+.-
T Consensus 158 ~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l 237 (312)
T smart00787 158 EDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQEL 237 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666665544433 223322 3344444444444444444444444444444443
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHh
Q 018954 218 KIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 266 (348)
Q Consensus 218 ki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~i 266 (348)
...+.+..+-...++=++..-.+.+++-++ -=..||+.|...|+.|
T Consensus 238 ~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~---~t~~Ei~~Lk~~~~~L 283 (312)
T smart00787 238 ESKIEDLTNKKSELNTEIAEAEKKLEQCRG---FTFKEIEKLKEQLKLL 283 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHH
Confidence 333333333333333333322222221110 1123677777776553
No 72
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.73 E-value=20 Score=33.36 Aligned_cols=107 Identities=12% Similarity=0.228 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHH----HHHHHHH
Q 018954 158 LREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQA----ALEKSQW 233 (348)
Q Consensus 158 LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqA----aLEKlew 233 (348)
.+++|+.+. .||.+++...+.+..++..+....+.+.++++.-+.-|.+++.|+.+......+.-. ++..|+-
T Consensus 40 sQ~~id~~~---~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 40 SQKRIDQWD---DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 367888888888888888888888888888888888888888888888766655554 4444544
Q ss_pred HHH--------HhhhHHHHHHHHHhhhhhhHH-HHHHHHHHhh
Q 018954 234 EAM--------TVSRKAEKLQEEVESMQGEMS-SFMQIFEGLI 267 (348)
Q Consensus 234 Ea~--------tsn~Kve~LQ~dl~sm~~EIs-slm~~fe~it 267 (348)
-|. .+-..++.|..-|+.-+.-.+ .|+.+++.+.
T Consensus 117 ~v~~d~Pf~~~eR~~Rl~~L~~~l~~~dv~~~ek~r~vlea~~ 159 (251)
T PF11932_consen 117 FVELDLPFLLEERQERLARLRAMLDDADVSLAEKFRRVLEAYQ 159 (251)
T ss_pred HHhcCCCCChHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHH
Confidence 222 355677777777777666555 6888887644
No 73
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=88.69 E-value=16 Score=32.14 Aligned_cols=106 Identities=22% Similarity=0.384 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQW 233 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlew 233 (348)
|+..++.++..|++++.+-++.+.... .+...+......++..+.....-+++......+....+.+.+..+...+.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~ 158 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELE---SELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSRE 158 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444333332222 23333333333333444444444444444444444444444445555555
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhHHHHHHH
Q 018954 234 EAMTVSRKAEKLQEEVESMQGEMSSFMQI 262 (348)
Q Consensus 234 Ea~tsn~Kve~LQ~dl~sm~~EIsslm~~ 262 (348)
++..-..=+..++.+.......|.....+
T Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 187 (191)
T PF04156_consen 159 EVQELRSQLERLQENLQQLEEKIQELQEL 187 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555444444433
No 74
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.48 E-value=13 Score=39.58 Aligned_cols=60 Identities=13% Similarity=0.195 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh
Q 018954 155 LVALREQVEDLQRKMFEKDELLKSLESS------------KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQL 214 (348)
Q Consensus 155 l~~LreQVeeLqkKL~EKDelLkSae~~------------~~em~a~~akvDELr~qlaeKe~likStq~QL 214 (348)
..-|.+|+.+|+++|.+.|..|..-... ..+|+.++.++-..+.+.++.+....+++.+|
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l 267 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKAL 267 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668999999999999999888776543 25666666666666665555555555544443
No 75
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=88.46 E-value=21 Score=40.42 Aligned_cols=84 Identities=17% Similarity=0.196 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH-HHHHH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS-SFMQI 262 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIs-slm~~ 262 (348)
-+.......+|++.++..+++..|.-.+-+.+.+.-|.-+.--+||+++.|....-.++++||..+++....=+ ++..+
T Consensus 452 kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l 531 (980)
T KOG0980|consen 452 KQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQL 531 (980)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45555556677777888888888888999999988899999999999999999999999999999777655444 44433
Q ss_pred HHHhh
Q 018954 263 FEGLI 267 (348)
Q Consensus 263 fe~it 267 (348)
-+.+.
T Consensus 532 ~~~l~ 536 (980)
T KOG0980|consen 532 EDLLK 536 (980)
T ss_pred HHHHH
Confidence 33333
No 76
>PRK04863 mukB cell division protein MukB; Provisional
Probab=88.43 E-value=19 Score=42.56 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 018954 151 EIEELVALREQVEDLQRKMFEKDELLKSLESS 182 (348)
Q Consensus 151 d~eEl~~LreQVeeLqkKL~EKDelLkSae~~ 182 (348)
-.||....+.+..+..++|.+++.-|..++..
T Consensus 284 liEEAag~r~rk~eA~kkLe~tE~nL~rI~di 315 (1486)
T PRK04863 284 HLEEALELRRELYTSRRQLAAEQYRLVEMARE 315 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666655555443
No 77
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.15 E-value=20 Score=34.58 Aligned_cols=156 Identities=21% Similarity=0.234 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHH--hhhhHHHHHHHHHHHHHH
Q 018954 160 EQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKI--KLADKQAALEKSQWEAMT 237 (348)
Q Consensus 160 eQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki--~LadKqAaLEKlewEa~t 237 (348)
++.++|++...|++.+.+.++...-++..+..++-.+...+.+=..-++.++..|..++- ++.+.+-.+..++....+
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~ 107 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINS 107 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888887777777776666666666666666666655666666666633321 222233333334455555
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHHHHHHHhhhcCCCCCCCCCCCCCccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 018954 238 VSRKAEKLQEEVESMQGEMSSFMQIFEGLIKNDSTVNADDDYDIKPYYSDYLSDIDDLDDVEMQRMEEAREAYITAVAMA 317 (348)
Q Consensus 238 sn~Kve~LQ~dl~sm~~EIsslm~~fe~it~N~S~~~~ded~d~~~~~~e~l~~~de~~~~e~ekmE~aR~aY~aAvaaA 317 (348)
-++.+.+|.+.+..++.+|..+..-+..+..+-.... .-.+.++.++.+.+..|..=-.--
T Consensus 108 le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~-------------------~~~e~e~~~i~e~~~~~~~~~~~L 168 (239)
T COG1579 108 LEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE-------------------ARLEEEVAEIREEGQELSSKREEL 168 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555544442211111 112456677777777666666655
Q ss_pred hhcCCHHHHHHHHHHHH
Q 018954 318 KEKQDEESMATAARARL 334 (348)
Q Consensus 318 Kenp~eEsl~~aAeaR~ 334 (348)
++.-+.+.|..=..-|+
T Consensus 169 ~~~l~~ell~~yeri~~ 185 (239)
T COG1579 169 KEKLDPELLSEYERIRK 185 (239)
T ss_pred HHhcCHHHHHHHHHHHh
Confidence 66666666555444443
No 78
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.04 E-value=21 Score=38.62 Aligned_cols=101 Identities=23% Similarity=0.301 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 018954 158 LREQVEDLQRKMFEKDELLKSLESS----------------------------KSQVNAVHLKLDELKRLAAEKDSLIKS 209 (348)
Q Consensus 158 LreQVeeLqkKL~EKDelLkSae~~----------------------------~~em~a~~akvDELr~qlaeKe~likS 209 (348)
+-.+|++|+++..+=.+.+.+++-. +..+-..-.+|..|+.++.+||.-|+.
T Consensus 233 i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~ 312 (581)
T KOG0995|consen 233 IANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEK 312 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567778888777777766655543 133344556788999999999999999
Q ss_pred HhHHhhHHHHhhh----------hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHH
Q 018954 210 TQLQLSDAKIKLA----------DKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSS 258 (348)
Q Consensus 210 tq~QLsdaki~La----------dKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIss 258 (348)
+|.+-.+-|..+- .|.+-.++|++++-.-+.+.+.|+..+-+..-+|..
T Consensus 313 lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~ 371 (581)
T KOG0995|consen 313 LQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIED 371 (581)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9998887765543 366777888888888888888888888887777663
No 79
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=87.93 E-value=4.8 Score=31.96 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=23.5
Q ss_pred HHHHHHhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 018954 164 DLQRKMFEKDELLKSL----ESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQ 211 (348)
Q Consensus 164 eLqkKL~EKDelLkSa----e~~~~em~a~~akvDELr~qlaeKe~likStq 211 (348)
.|.++|.|||+.+.-+ +.+...-.....+|.-||.+..+=+.-|..+.
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~ 53 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELK 53 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666543322 33344444445555555555555444444433
No 80
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=87.86 E-value=11 Score=32.80 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHhHHhhHHHHhhhhHHHHH
Q 018954 181 SSKSQVNAVHLKLDELKRLAAEKDSLIK-STQLQLSDAKIKLADKQAAL 228 (348)
Q Consensus 181 ~~~~em~a~~akvDELr~qlaeKe~lik-Stq~QLsdaki~LadKqAaL 228 (348)
+....++.|+++|+++++.+.. +.+.+ -++.+|..+++.-|--+..|
T Consensus 55 s~~qr~~eLqaki~ea~~~le~-eK~ak~~l~~r~~k~~~dka~lel~l 102 (107)
T PF09304_consen 55 SRNQRIAELQAKIDEARRNLED-EKQAKLELESRLLKAQKDKAILELKL 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3357778888888888888776 66666 77778887777766555544
No 81
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=87.61 E-value=21 Score=41.02 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESSK 183 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~ 183 (348)
.-++.|..+.+.|..|+|++.|..+.|+.++++.
T Consensus 225 ~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e 258 (1074)
T KOG0250|consen 225 HAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLE 258 (1074)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888899999999999999999887774
No 82
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=87.41 E-value=16 Score=31.27 Aligned_cols=104 Identities=22% Similarity=0.235 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS 231 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKl 231 (348)
..++..|..+.+.|-...++++.- ++..++++...+..+..|+.++.+|..-.+...... +-.+.+.+|
T Consensus 33 ~~~~~~l~~~n~~lAe~nL~~~~~---l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~--------s~~~l~~~L 101 (150)
T PF07200_consen 33 QQEREELLAENEELAEQNLSLEPE---LEELRSQLQELYEELKELESEYQEKEQQQDELSSNY--------SPDALLARL 101 (150)
T ss_dssp HHHHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--------CHHHHHHHH
Confidence 344555555555555555555433 333445555666666666666666655444432222 234667777
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHh
Q 018954 232 QWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 266 (348)
Q Consensus 232 ewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~i 266 (348)
+-.+.......+.|-+..-.=..++..|-..|...
T Consensus 102 ~~~~~e~eeeSe~lae~fl~g~~d~~~Fl~~f~~~ 136 (150)
T PF07200_consen 102 QAAASEAEEESEELAEEFLDGEIDVDDFLKQFKEK 136 (150)
T ss_dssp HHHHHHHHHHHHHHC-S-SSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 77777777778777444433344556777777543
No 83
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=87.26 E-value=19 Score=35.43 Aligned_cols=48 Identities=10% Similarity=0.221 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHh
Q 018954 155 LVALREQVEDLQRKMFEKDELLKSLESS-------------KSQVNAVHLKLDELKRLAAE 202 (348)
Q Consensus 155 l~~LreQVeeLqkKL~EKDelLkSae~~-------------~~em~a~~akvDELr~qlae 202 (348)
+.-|.+|+.+++++|.+-+..|..-... ..+++.++.++-..+.++.+
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 233 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMD 233 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 5568899999999999999988875553 24455555555555544443
No 84
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.99 E-value=25 Score=37.69 Aligned_cols=104 Identities=14% Similarity=0.242 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALE 229 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLE 229 (348)
..-.|+..++--|++-.+. -..+..++..+...+++|++.+.++...+..++..+.+.---|++++|.+.
T Consensus 89 ~ye~El~~ar~~l~e~~~~----------ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~ 158 (546)
T KOG0977|consen 89 KYEAELATARKLLDETARE----------RAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEIN 158 (546)
T ss_pred HhhhhHHHHHHHHHHHHHH----------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHH
Confidence 4445777777766655443 344567888888888899999999888888888888888888888888888
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 230 KSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 230 KlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
-+-+-+..-...+..|..+.+-+..+|.....++
T Consensus 159 ~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 159 TLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 8888887777777777777777777777666544
No 85
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=86.82 E-value=18 Score=37.90 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 018954 176 LKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQ 211 (348)
Q Consensus 176 LkSae~~~~em~a~~akvDELr~qlaeKe~likStq 211 (348)
+.++..+..++..+.+.++++...+.++..-...++
T Consensus 347 ~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~ 382 (569)
T PRK04778 347 LESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQ 382 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 555556666666666666655555555544333333
No 86
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=86.72 E-value=22 Score=40.51 Aligned_cols=101 Identities=21% Similarity=0.381 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHH-H
Q 018954 157 ALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWE-A 235 (348)
Q Consensus 157 ~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewE-a 235 (348)
.|+++++.+..+|.......+.+ ..++.+.+.++++++.++.....-++..+..+...+..+...+..++..--+ .
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~---e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 680 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEEL---EKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERK 680 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665555444333 3444556666777777776666666666666655555554444444332222 2
Q ss_pred HHhhhHHHHHHHHHhhhhhhHHHHH
Q 018954 236 MTVSRKAEKLQEEVESMQGEMSSFM 260 (348)
Q Consensus 236 ~tsn~Kve~LQ~dl~sm~~EIsslm 260 (348)
....+++..+..++.....++..+.
T Consensus 681 ~~~~~~l~~l~~~l~~~~~e~~~~~ 705 (1201)
T PF12128_consen 681 EQIEEQLNELEEELKQLKQELEELL 705 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344444444444444444444433
No 87
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.67 E-value=14 Score=34.60 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKD 173 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKD 173 (348)
--++-+-.|+.|+.+|+.+|.+-+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888888888877743
No 88
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=86.65 E-value=18 Score=35.65 Aligned_cols=82 Identities=21% Similarity=0.235 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHh-hHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhH---HHHHHHHHhhhhhhHHHH
Q 018954 184 SQVNAVHLKLDELKRLAAE-KDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRK---AEKLQEEVESMQGEMSSF 259 (348)
Q Consensus 184 ~em~a~~akvDELr~qlae-Ke~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~K---ve~LQ~dl~sm~~EIssl 259 (348)
-.|..+.++++++++++.. -..++.+.+..+..++..+++.++.++.++-++..-+.+ ...|+-|++.-+.-..+|
T Consensus 282 P~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~l 361 (444)
T TIGR03017 282 PQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAA 361 (444)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555432 234445555555555555666666666655555544433 233444444444444444
Q ss_pred HHHHHH
Q 018954 260 MQIFEG 265 (348)
Q Consensus 260 m~~fe~ 265 (348)
...++.
T Consensus 362 l~r~~e 367 (444)
T TIGR03017 362 MQRYTQ 367 (444)
T ss_pred HHHHHH
Confidence 444433
No 89
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=86.55 E-value=22 Score=32.35 Aligned_cols=91 Identities=14% Similarity=0.233 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH-HHHHHHHhhhHHHHHHHHHh
Q 018954 172 KDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEK-SQWEAMTVSRKAEKLQEEVE 250 (348)
Q Consensus 172 KDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEK-lewEa~tsn~Kve~LQ~dl~ 250 (348)
|+++..-+|.+..+...+...|++++.++++==.-+-.+...-.-|+..|++--....+ .|-+++.-=.+|..+|.+|.
T Consensus 15 K~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~ 94 (159)
T PF05384_consen 15 KEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLA 94 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHH
Confidence 45555555555666666666666666666665555556666666666666665555544 45566666666666666666
Q ss_pred hhhhhHHHHHHH
Q 018954 251 SMQGEMSSFMQI 262 (348)
Q Consensus 251 sm~~EIsslm~~ 262 (348)
.++.+-..|+.-
T Consensus 95 ~~re~E~qLr~r 106 (159)
T PF05384_consen 95 MLREREKQLRER 106 (159)
T ss_pred HHHHHHHHHHHH
Confidence 666666655543
No 90
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=86.51 E-value=29 Score=33.64 Aligned_cols=60 Identities=10% Similarity=0.117 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSLESS------KSQVNAVHLKLDELKRLAAEKDSLIKSTQ 211 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~------~~em~a~~akvDELr~qlaeKe~likStq 211 (348)
++-+.-|++||+.++++|.+-+..|..-... ..+..+....+.+|+.++++-+.-+..+.
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~ 234 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLR 234 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678899999999999888887766553 13344444555555555555554444443
No 91
>PRK04863 mukB cell division protein MukB; Provisional
Probab=86.12 E-value=33 Score=40.59 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESSK 183 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~ 183 (348)
+..+|...|-|++-..+ .+|.++++.++...
T Consensus 276 r~~eERR~liEEAag~r---~rk~eA~kkLe~tE 306 (1486)
T PRK04863 276 RHANERRVHLEEALELR---RELYTSRRQLAAEQ 306 (1486)
T ss_pred hCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 55677788888886655 44555555555443
No 92
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=86.03 E-value=25 Score=37.14 Aligned_cols=72 Identities=13% Similarity=0.166 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhH
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADK 224 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadK 224 (348)
+.++..+.+++++|.++|..-+.- ..++....++..+..++++++.++.....-|+....++...+..+...
T Consensus 397 ~~~~~~~e~el~~l~~~l~~~~~~-e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 397 LKELRELEEELAEVDKKISTIPSE-EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666432110 123334455555555555555555555555555555555544444333
No 93
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.02 E-value=20 Score=35.18 Aligned_cols=94 Identities=21% Similarity=0.308 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALE 229 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLE 229 (348)
...+++..+.++++.|++ |.+++++.++.+..+-..+.+.+..|..+..+.+......-.+....+..+.+.+-.++
T Consensus 40 ~~~~~~~~~~~el~~le~---Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~ 116 (314)
T PF04111_consen 40 DSEEDIEELEEELEKLEQ---EEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERD 116 (314)
T ss_dssp --HH--HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666654 44555555666666666666666666666666555555555555555555555555444
Q ss_pred HHHHHHHHhhhHHHHHH
Q 018954 230 KSQWEAMTVSRKAEKLQ 246 (348)
Q Consensus 230 KlewEa~tsn~Kve~LQ 246 (348)
.++-..-..+..+++|+
T Consensus 117 sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 117 SLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444444
No 94
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=85.97 E-value=32 Score=39.19 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=35.8
Q ss_pred HHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 205 SLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 205 ~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
.-|...|++|.+++|.|.+-.+-|++++-|+--.-+-+-..=++|-+.--+|..|.-+|
T Consensus 127 ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~ 185 (1265)
T KOG0976|consen 127 DTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEF 185 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHH
Confidence 34566677777777777777777777777764443333333344555555555555444
No 95
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=85.94 E-value=6.6 Score=39.53 Aligned_cols=72 Identities=26% Similarity=0.362 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHH---HHHHHHHhhh---HHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhhHHHHH
Q 018954 150 KEIEELVALREQV---EDLQRKMFEK---DELLKSLESS---------------KSQVNAVHLKLDELKRLAAEKDSLIK 208 (348)
Q Consensus 150 kd~eEl~~LreQV---eeLqkKL~EK---DelLkSae~~---------------~~em~a~~akvDELr~qlaeKe~lik 208 (348)
..+++-..|++-| |.+++||.|+ +-+|..+... -.++-.|+.+|++|+++|.+.+..++
T Consensus 120 ~~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~ 199 (323)
T PF08537_consen 120 SGREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELE 199 (323)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555656666655 7899999999 3477766544 27899999999999999999999999
Q ss_pred HHhHHhhHHHHhh
Q 018954 209 STQLQLSDAKIKL 221 (348)
Q Consensus 209 Stq~QLsdaki~L 221 (348)
+|+--|.=|+-+-
T Consensus 200 ~~~k~L~faqekn 212 (323)
T PF08537_consen 200 ITKKDLKFAQEKN 212 (323)
T ss_pred HHHHHHHHHHHHH
Confidence 9888887776443
No 96
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.65 E-value=17 Score=34.04 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSL 179 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSa 179 (348)
....+++++..|+++|.+=..-|..+
T Consensus 87 ~~p~~~~rlp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 87 TTPSLRTRVPDLENQVKTLTDKLNNI 112 (206)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777766544444333
No 97
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=85.55 E-value=26 Score=31.26 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=54.5
Q ss_pred HhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhhhcC
Q 018954 210 TQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKND 270 (348)
Q Consensus 210 tq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it~N~ 270 (348)
.+.++..+...|.-|++.++|+.+.-..+..|++.++.++...+.-+..+..-|+.|+++.
T Consensus 133 ~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~ 193 (236)
T PF09325_consen 133 KLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENI 193 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999998778899999999999999999999999999998653
No 98
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=85.50 E-value=8.9 Score=33.65 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 018954 151 EIEELVALREQVEDLQRKMFE 171 (348)
Q Consensus 151 d~eEl~~LreQVeeLqkKL~E 171 (348)
+.+|+..|..+|.+|+.+|.+
T Consensus 70 s~eel~~ld~ei~~L~~el~~ 90 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAE 90 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHH
Confidence 445566665555555555443
No 99
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=85.27 E-value=36 Score=36.61 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESSKS 184 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~ 184 (348)
....|+..|++||++|...+.+-+.-++.+.....
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~ 359 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLK 359 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678999999999999988888777777665543
No 100
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=85.26 E-value=30 Score=31.69 Aligned_cols=60 Identities=25% Similarity=0.230 Sum_probs=50.0
Q ss_pred hHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhhhcC
Q 018954 211 QLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKND 270 (348)
Q Consensus 211 q~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it~N~ 270 (348)
+..+..+...|.-|++.++||.+--.+...|+..++.+|...+........-|+.|+++.
T Consensus 114 ~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~ 173 (216)
T cd07627 114 WQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELI 173 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667888899999999999874344578999999999999999999999999998553
No 101
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=85.18 E-value=34 Score=32.21 Aligned_cols=83 Identities=17% Similarity=0.246 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHh-------hhHHHHHHHHHhhhhhh
Q 018954 183 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTV-------SRKAEKLQEEVESMQGE 255 (348)
Q Consensus 183 ~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~ts-------n~Kve~LQ~dl~sm~~E 255 (348)
..+|..++..||.+..+-+.=+.-+..++.++.+.+.++-+-.+....++-++... .....+|+..+..++.|
T Consensus 53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eE 132 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEE 132 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHH
Confidence 45555555666665555555555555555555555555554444444444333322 22334577777777778
Q ss_pred HHHHHHHHHH
Q 018954 256 MSSFMQIFEG 265 (348)
Q Consensus 256 Isslm~~fe~ 265 (348)
|.-+...++.
T Consensus 133 l~fl~~~hee 142 (312)
T PF00038_consen 133 LEFLKQNHEE 142 (312)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhhhh
Confidence 8766666654
No 102
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.67 E-value=19 Score=35.28 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=15.5
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhhh
Q 018954 244 KLQEEVESMQGEMSSFMQIFEGLIK 268 (348)
Q Consensus 244 ~LQ~dl~sm~~EIsslm~~fe~it~ 268 (348)
.++++.+++...+......++.|.+
T Consensus 110 ~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 110 EFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666666666666663
No 103
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=84.64 E-value=37 Score=36.21 Aligned_cols=58 Identities=21% Similarity=0.233 Sum_probs=41.9
Q ss_pred CCccccCCCCCCCCCChHH-HHHHHHHHHHHHHHHHHH-----hhcCCHHHHHHHHHHHHhhhhh
Q 018954 281 IKPYYSDYLSDIDDLDDVE-MQRMEEAREAYITAVAMA-----KEKQDEESMATAARARLHLQSF 339 (348)
Q Consensus 281 ~~~~~~e~l~~~de~~~~e-~ekmE~aR~aY~aAvaaA-----Kenp~eEsl~~aAeaR~~LQ~f 339 (348)
+.|-.+..|.. ..+++.+ ++.+|.|=.+--.|+.+. ...|+-..|.++.+-|..+...
T Consensus 100 i~~~~l~~L~~-~~l~~~~~l~~~e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~~~ 163 (701)
T PF09763_consen 100 IPEEHLEALRN-ASLSSPDGLEKIEEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYEKV 163 (701)
T ss_pred CCHHHHHHHhc-CCCCCcccHHHHHHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHHHH
Confidence 44455566666 4454444 889998888777787772 5778888999999999887643
No 104
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=84.48 E-value=34 Score=31.93 Aligned_cols=67 Identities=22% Similarity=0.268 Sum_probs=49.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHH
Q 018954 183 KSQVNAVHLK-LDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFM 260 (348)
Q Consensus 183 ~~em~a~~ak-vDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm 260 (348)
..++..-|+. +++|+.++.+++..+..++.+|.. |.+-+.-=++.++|+ ..|+.++.+|+.+.+.-.
T Consensus 38 r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~----l~~~~~~k~~qe~eI-------~~Le~e~~~~~~e~~~~l 105 (206)
T PF14988_consen 38 RQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQA----LKEFRRLKEQQEREI-------QTLEEELEKMRAEHAEKL 105 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4555555554 999999999999999999999865 455555556666665 567777778888877543
No 105
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=84.38 E-value=18 Score=41.10 Aligned_cols=128 Identities=10% Similarity=0.085 Sum_probs=85.5
Q ss_pred CCCCccccchhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 018954 134 DSDSFSIFSSRALVSEKEIEELVALREQVEDLQRKMFEKDELLKSLESS----KSQVNAVHLKLDELKRLAAEKDSLIKS 209 (348)
Q Consensus 134 ~~en~s~~~s~~~~~~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~----~~em~a~~akvDELr~qlaeKe~likS 209 (348)
-+.|+|+.+.++-- ---+|..-+|+-|..|...|.++...++-+... ..+..++++++-.+..++.+-+-=|.+
T Consensus 68 aglneSviie~sk~--vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~ 145 (1265)
T KOG0976|consen 68 AGLNESVIIEQSKK--VSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIEN 145 (1265)
T ss_pred hhccchhhhhhcch--hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666665554321 112355566666666666666666666655544 466777888888888888888888888
Q ss_pred HhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 210 TQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 210 tq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
+.+.||.-...|--|.--+-..=-++.-++.+..++..++--.-.|++.+-..+
T Consensus 146 ~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~l 199 (1265)
T KOG0976|consen 146 LNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKAL 199 (1265)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 888888877777766666666666677777777777777777777777655443
No 106
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=84.36 E-value=30 Score=36.28 Aligned_cols=78 Identities=15% Similarity=0.222 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 186 VNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 186 m~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
+..+..++.++...+.+-..-|..-....+..+..+.+...-|+.++-+-+.-...++.|+.+-...+..|..|...+
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L 427 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKL 427 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444433333333333344444444444444555555544444444444444444444444444444
No 107
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=84.32 E-value=39 Score=35.80 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH
Q 018954 153 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS 231 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKl 231 (348)
..+..|+.++..++.+|.+-+.-|..+.. ..++..+..+++++.+.+.+-..-+...+.++...+..+...+.-+.++
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~-~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPS-EEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555554444444332 2567777777777777777777777777777776666666666655554
No 108
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=84.02 E-value=26 Score=40.35 Aligned_cols=117 Identities=24% Similarity=0.265 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH-----hhH
Q 018954 151 EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQV---------------------NAVHLKLDELKRLAA-----EKD 204 (348)
Q Consensus 151 d~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em---------------------~a~~akvDELr~qla-----eKe 204 (348)
=..+++.|++.|--|+..|-||-+.|.-+++-..+| ..-..++|+++.+.. =|+
T Consensus 175 L~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~yke 254 (1195)
T KOG4643|consen 175 LEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKE 254 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccch
Confidence 356999999999999999999999998877664222 222334455554432 255
Q ss_pred HHHHH--HhHHhhHHHH----hhhhHHHHHHHHH------------HHHHHhhhHHHHHHHHHh-------hhhhhHHHH
Q 018954 205 SLIKS--TQLQLSDAKI----KLADKQAALEKSQ------------WEAMTVSRKAEKLQEEVE-------SMQGEMSSF 259 (348)
Q Consensus 205 ~likS--tq~QLsdaki----~LadKqAaLEKle------------wEa~tsn~Kve~LQ~dl~-------sm~~EIssl 259 (348)
++..| .-.++-++|. -|++|+-.=|+|| -|+.+=+.|..+|+.+.+ .+..|+++|
T Consensus 255 rlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstL 334 (1195)
T KOG4643|consen 255 RLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTL 334 (1195)
T ss_pred hhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 66555 5555555444 4777776666644 455555666666654433 344455555
Q ss_pred HHHHHHhh
Q 018954 260 MQIFEGLI 267 (348)
Q Consensus 260 m~~fe~it 267 (348)
|-+=+.|.
T Consensus 335 q~q~eqL~ 342 (1195)
T KOG4643|consen 335 QVQKEQLD 342 (1195)
T ss_pred HHHHHHhh
Confidence 55544444
No 109
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=83.71 E-value=3.8 Score=43.03 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=49.7
Q ss_pred HHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhhh
Q 018954 209 STQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIK 268 (348)
Q Consensus 209 Stq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it~ 268 (348)
--|+-|.+.+.++.+.+.-|++|+-|+-+.+++..++|..|..++.||..|..+++.+..
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 446667777788888888888888888888888889999999999999999999876443
No 110
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=83.56 E-value=12 Score=33.30 Aligned_cols=116 Identities=16% Similarity=0.240 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH
Q 018954 151 EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEK 230 (348)
Q Consensus 151 d~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEK 230 (348)
.+..+-.+.++++.|+.+|-+-+.-|+.++.....+..|+++|++|+..+..... -+++++.=-.+..||+.
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~--------~~e~~l~~~~~~~ai~~ 89 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKE--------EYEAKLAQMKKDSAIKS 89 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 4456667788999999999999999999999888899999999999988865332 22233333334566666
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhhhh---HHHHHHHHHHhhhcCCCCC
Q 018954 231 SQWEAMTVSRKAEKLQEEVESMQGE---MSSFMQIFEGLIKNDSTVN 274 (348)
Q Consensus 231 lewEa~tsn~Kve~LQ~dl~sm~~E---Isslm~~fe~it~N~S~~~ 274 (348)
.=..+...|.|+-.-.-|++.+.+. +.-|-.++..|.+++.--+
T Consensus 90 al~~akakn~~av~allD~d~l~l~~dg~~Gldeqi~~lkes~~yLF 136 (155)
T PF06810_consen 90 ALKGAKAKNPKAVKALLDLDKLKLDDDGLKGLDEQIKALKESDPYLF 136 (155)
T ss_pred HHHHcCCCCHHHHHHhcCHHHeeeCCCccccHHHHHHHHHhcCchhc
Confidence 6666666777766555555554332 4456666666666554333
No 111
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=83.46 E-value=34 Score=31.66 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 239 SRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 239 n~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
...+.+|+.++..+..+|......|+.+.
T Consensus 158 ~~ei~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 158 DKEISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677888888888888888888888765
No 112
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=83.22 E-value=43 Score=31.84 Aligned_cols=39 Identities=26% Similarity=0.344 Sum_probs=27.6
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 018954 219 IKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 257 (348)
Q Consensus 219 i~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIs 257 (348)
..+.+.++-+.+|+-++-....=++.||.++..++...-
T Consensus 82 ~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~ 120 (246)
T PF00769_consen 82 QELREAEAEIARLEEESERKEEEAEELQEELEEAREDEE 120 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777777777777788887777776544
No 113
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=82.80 E-value=37 Score=32.95 Aligned_cols=68 Identities=12% Similarity=0.279 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHH
Q 018954 151 EIEELVALREQVEDLQRKMFE-------------KDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDA 217 (348)
Q Consensus 151 d~eEl~~LreQVeeLqkKL~E-------------KDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsda 217 (348)
-.+++..++.+++..+.+|.+ -......+..+..++..+..++.+++....+.---++.++.|+...
T Consensus 175 l~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l 254 (362)
T TIGR01010 175 AENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSL 254 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHH
Confidence 344566666666666655543 1123333444445555555555555544444333344444444333
Q ss_pred H
Q 018954 218 K 218 (348)
Q Consensus 218 k 218 (348)
+
T Consensus 255 ~ 255 (362)
T TIGR01010 255 R 255 (362)
T ss_pred H
Confidence 3
No 114
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=82.58 E-value=35 Score=34.38 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKS 178 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkS 178 (348)
++..+..+|..++.++..-..++++
T Consensus 173 ~~~~~~~~i~~~~~~~~~~~~~~~~ 197 (457)
T TIGR01000 173 TKAQLDQQISKTDQKLQDYQALKNA 197 (457)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 115
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=82.56 E-value=26 Score=32.46 Aligned_cols=86 Identities=17% Similarity=0.241 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHH---------hhhHHHHHHHH
Q 018954 178 SLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMT---------VSRKAEKLQEE 248 (348)
Q Consensus 178 Sae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~t---------sn~Kve~LQ~d 248 (348)
+++.+..+++...+.+-++...+++-.+.+.+.+.....+...+.+-...++.+...+.. +.-....|+-+
T Consensus 79 s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae 158 (240)
T PF12795_consen 79 SLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAE 158 (240)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHH
Confidence 344456777777777777777777777777777777777777777777777777666553 23344445555
Q ss_pred HhhhhhhHHHHHHHH
Q 018954 249 VESMQGEMSSFMQIF 263 (348)
Q Consensus 249 l~sm~~EIsslm~~f 263 (348)
+..+..+|.-+...+
T Consensus 159 ~~~l~~~~~~le~el 173 (240)
T PF12795_consen 159 LAALEAQIEMLEQEL 173 (240)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555444333
No 116
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=82.53 E-value=41 Score=31.13 Aligned_cols=84 Identities=23% Similarity=0.296 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHH------------HHHHh----------HHhhHHHHhhhhHHHHHHHHHHHHHHhhhH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSL------------IKSTQ----------LQLSDAKIKLADKQAALEKSQWEAMTVSRK 241 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~l------------ikStq----------~QLsdaki~LadKqAaLEKlewEa~tsn~K 241 (348)
..+..++.+|.++....+..|.+ |.|+. ..+..+...|.-|++.++||++.- ...|
T Consensus 73 ~~la~~~~ki~~~~~~qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~--~~~K 150 (224)
T cd07623 73 SQLAEVEEKIEQLHGEQADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSG--RTDK 150 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--ChhH
Confidence 56777777777777777777654 22222 345667777899999999998754 3579
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhc
Q 018954 242 AEKLQEEVESMQGEMSSFMQIFEGLIKN 269 (348)
Q Consensus 242 ve~LQ~dl~sm~~EIsslm~~fe~it~N 269 (348)
++.++.+|...+.-......-|+.|+++
T Consensus 151 ~~~~~~ev~~~e~~~~~a~~~fe~is~~ 178 (224)
T cd07623 151 LDQAQQEIKEWEAKVDRGQKEFEEISKT 178 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999843
No 117
>PF15456 Uds1: Up-regulated During Septation
Probab=82.24 E-value=21 Score=31.10 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHH
Q 018954 226 AALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQI 262 (348)
Q Consensus 226 AaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~ 262 (348)
-.+.+.+-|...++.||+++..++...+.-.+.++.-
T Consensus 74 ~~~~~~eeel~~~~rk~ee~~~eL~~le~R~~~~~~r 110 (124)
T PF15456_consen 74 ESSLKAEEELAESDRKCEELAQELWKLENRLAEVRQR 110 (124)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788899999999999999999999988877543
No 118
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=82.23 E-value=19 Score=36.01 Aligned_cols=84 Identities=15% Similarity=0.268 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhH-------------HHHhh----hhHHHHHHHHHHHHH
Q 018954 174 ELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSD-------------AKIKL----ADKQAALEKSQWEAM 236 (348)
Q Consensus 174 elLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsd-------------aki~L----adKqAaLEKlewEa~ 236 (348)
+|=-.......+|..+...|+.|++-+.+|+.-++-+|.-|.. ++..| .+.+..+.+|+--+.
T Consensus 262 ~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~ 341 (384)
T PF03148_consen 262 ELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLD 341 (384)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344456777777777777777777777777777666643 33333 455666666777777
Q ss_pred HhhhHHHHHHHHHhhhhhhHH
Q 018954 237 TVSRKAEKLQEEVESMQGEMS 257 (348)
Q Consensus 237 tsn~Kve~LQ~dl~sm~~EIs 257 (348)
.+..-...|..-...++.+|.
T Consensus 342 ~a~~~l~~L~~~~~~Le~di~ 362 (384)
T PF03148_consen 342 EAEASLQKLERTRLRLEEDIA 362 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766
No 119
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=82.17 E-value=49 Score=33.25 Aligned_cols=32 Identities=41% Similarity=0.416 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 018954 151 EIEELVALREQVEDLQRKMFEKDELLKSLESS 182 (348)
Q Consensus 151 d~eEl~~LreQVeeLqkKL~EKDelLkSae~~ 182 (348)
--++|..-.++|..|+-.|.-||+||+-.-+.
T Consensus 102 le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~ 133 (306)
T PF04849_consen 102 LEEQLGAALEQVEQLRHELSMKDELLQIYSND 133 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 34578899999999999999999999866543
No 120
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=82.16 E-value=52 Score=39.99 Aligned_cols=111 Identities=25% Similarity=0.382 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHH--
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVN-AVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQA-- 226 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~-a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqA-- 226 (348)
-|..++..|...|..|+.+|.+|+-+...++.--+++. .++.++|++..+.+.+..-|+ ||-++++.|+.+.-
T Consensus 1304 ~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~----ql~~~~~rL~~~~~e~ 1379 (1822)
T KOG4674|consen 1304 SDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELE----QLEDLKTRLAAALSEK 1379 (1822)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 46778999999999999999999999998888766554 667777877777766655554 34445554443322
Q ss_pred ---------HHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018954 227 ---------ALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 265 (348)
Q Consensus 227 ---------aLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~ 265 (348)
+.....-.-=..++|.+++-.++. +.+||.++...+..
T Consensus 1380 ~~q~~el~~~~~~~~~~~e~t~rk~e~~~~k~~-~~~e~~sl~eeL~e 1426 (1822)
T KOG4674|consen 1380 NAQELELSDKKKAHELMQEDTSRKLEKLKEKLE-LSEELESLKEELEE 1426 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHH
Confidence 111111111134455555555554 44666666666533
No 121
>PRK12704 phosphodiesterase; Provisional
Probab=81.95 E-value=49 Score=34.84 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHH
Q 018954 227 ALEKSQWEAMTVSRKAEKLQEEV 249 (348)
Q Consensus 227 aLEKlewEa~tsn~Kve~LQ~dl 249 (348)
.|++.+.++-.....+++++.++
T Consensus 104 ~Lekke~eL~~re~~Le~re~eL 126 (520)
T PRK12704 104 LLEKREEELEKKEKELEQKQQEL 126 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 122
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=81.61 E-value=44 Score=36.52 Aligned_cols=41 Identities=32% Similarity=0.361 Sum_probs=23.1
Q ss_pred HHHHHHHhhHHHHH----HHhHHhhHHHHhhhhHHHHHHHHHHHH
Q 018954 195 ELKRLAAEKDSLIK----STQLQLSDAKIKLADKQAALEKSQWEA 235 (348)
Q Consensus 195 ELr~qlaeKe~lik----Stq~QLsdaki~LadKqAaLEKlewEa 235 (348)
++-++.++++..++ .+|.|+..+.-+.-.+|.+++..+.++
T Consensus 175 ~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el 219 (629)
T KOG0963|consen 175 KLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNEL 219 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 44455566665554 345566666666666666666655443
No 123
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=81.49 E-value=9.1 Score=44.68 Aligned_cols=98 Identities=20% Similarity=0.198 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHH
Q 018954 155 LVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWE 234 (348)
Q Consensus 155 l~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewE 234 (348)
+.++.+.++++++||.|=-.+|-....+...+..+-.++.+||++|-+=---+--+..-|+|-...+-.-+-.||-||+|
T Consensus 1196 ~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~ 1275 (1758)
T KOG0994|consen 1196 LGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQRE 1275 (1758)
T ss_pred chhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHH
Confidence 45678889999999999989998777778888888888888888775433333333344555555555566677888888
Q ss_pred HHHhhhHHHHHHHHHhhh
Q 018954 235 AMTVSRKAEKLQEEVESM 252 (348)
Q Consensus 235 a~tsn~Kve~LQ~dl~sm 252 (348)
+-.-++-+.+|.+.++-+
T Consensus 1276 ~~~l~~~~keL~e~~~~i 1293 (1758)
T KOG0994|consen 1276 FNGLLTTYKELREQLEKI 1293 (1758)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 877777777777666543
No 124
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=81.14 E-value=21 Score=36.58 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=27.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 018954 147 VSEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKS 184 (348)
Q Consensus 147 ~~~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~ 184 (348)
..+...+++..|+.||..|+.++.+=..-+..++....
T Consensus 65 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 102 (525)
T TIGR02231 65 TSRPDPERLAELRKQIRELEAELRDLEDRGDALKALAK 102 (525)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567779999999999999888766655555444443
No 125
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=81.10 E-value=39 Score=36.35 Aligned_cols=97 Identities=18% Similarity=0.198 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHH---HHhhhhHHHHHHHH
Q 018954 155 LVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDA---KIKLADKQAALEKS 231 (348)
Q Consensus 155 l~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsda---ki~LadKqAaLEKl 231 (348)
...=..++++||++|- ++...++....+|..+...+.++..++.+++.-....+.++.-. ..+|.|....++||
T Consensus 323 ~~~~~~el~~l~~~l~---~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL 399 (594)
T PF05667_consen 323 QEEQEQELEELQEQLD---ELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKL 399 (594)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4455667788887764 46677777777888888888888888877777777777766533 24577777777776
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhh
Q 018954 232 QWEAMTVSRKAEKLQEEVESMQG 254 (348)
Q Consensus 232 ewEa~tsn~Kve~LQ~dl~sm~~ 254 (348)
|-=+-.+..|+..|+.+....+.
T Consensus 400 ~~~v~~s~~rl~~L~~qWe~~R~ 422 (594)
T PF05667_consen 400 QALVEASEQRLVELAQQWEKHRA 422 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 65555555555555544444333
No 126
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=81.09 E-value=59 Score=33.63 Aligned_cols=85 Identities=19% Similarity=0.271 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHH
Q 018954 183 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQI 262 (348)
Q Consensus 183 ~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~ 262 (348)
.+|-.-++.++|++.++..||+-=.++++-+|.++ +|=+|+..+--|-=...---=..+=|.-++.++.-+.-|||-
T Consensus 140 ~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~---layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~E 216 (401)
T PF06785_consen 140 REENQCLQLQLDALQQECGEKEEESQTLNRELAEA---LAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYE 216 (401)
T ss_pred HHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH---HHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 35556678899999999999999888888888876 455555555433222222222344466666666667777777
Q ss_pred HHHhhhcC
Q 018954 263 FEGLIKND 270 (348)
Q Consensus 263 fe~it~N~ 270 (348)
|.++--+.
T Consensus 217 irnLLQle 224 (401)
T PF06785_consen 217 IRNLLQLE 224 (401)
T ss_pred HHHHHHhh
Confidence 77755443
No 127
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=81.04 E-value=41 Score=36.77 Aligned_cols=67 Identities=28% Similarity=0.280 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHh----hhhHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Q 018954 185 QVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIK----LADKQAALEKSQWEAMTVSRKAEKLQEEVES 251 (348)
Q Consensus 185 em~a~~akvDELr~qlaeKe~likStq~QLsdaki~----LadKqAaLEKlewEa~tsn~Kve~LQ~dl~s 251 (348)
+--.+++++.++.+.+..=.+.|+-||.||.+.+.. .+-|.|-+.=+=-|+-.-++++..||.+++.
T Consensus 190 ~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~ 260 (629)
T KOG0963|consen 190 EEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQ 260 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455566666666666667777777888877776 5556555555444555555555544444433
No 128
>PRK11519 tyrosine kinase; Provisional
Probab=80.92 E-value=48 Score=35.66 Aligned_cols=49 Identities=14% Similarity=0.206 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESS------KSQVNAVHLKLDELKRLAAE 202 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~------~~em~a~~akvDELr~qlae 202 (348)
=+.-|.+|+.+|+++|.+.|..|..-... ..+..++..++.+++.++++
T Consensus 268 a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~ 322 (719)
T PRK11519 268 SLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNE 322 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 35568999999999999999998877654 23344444444444444444
No 129
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=80.85 E-value=36 Score=34.17 Aligned_cols=71 Identities=18% Similarity=0.261 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHhh
Q 018954 149 EKEIEELVALREQVEDLQRKMFEKDELLKSLESSK-------------------------SQVNAVHLKLDELKRLAAEK 203 (348)
Q Consensus 149 ~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~-------------------------~em~a~~akvDELr~qlaeK 203 (348)
.+--.-|..|..|++-|+|.--.|-=.|.|+|..- ..-..+..+-+-|-+.+.-|
T Consensus 14 ~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~K 93 (307)
T PF10481_consen 14 TRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVK 93 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhh
Confidence 33444677788899999988888888888877661 22233333444444555556
Q ss_pred HHHHHHHhHHhhHHHH
Q 018954 204 DSLIKSTQLQLSDAKI 219 (348)
Q Consensus 204 e~likStq~QLsdaki 219 (348)
|+.|.++.-||+-+|.
T Consensus 94 e~qv~~lEgQl~s~Kk 109 (307)
T PF10481_consen 94 ESQVNFLEGQLNSCKK 109 (307)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666655554
No 130
>PF13514 AAA_27: AAA domain
Probab=80.42 E-value=54 Score=37.01 Aligned_cols=53 Identities=23% Similarity=0.366 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSL 206 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~l 206 (348)
++..++.+|.+.+.+..+=..+.+.++....++..+..++.+++.+...-+.+
T Consensus 158 ~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~ 210 (1111)
T PF13514_consen 158 ELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERL 210 (1111)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444455555555555555555555555555444444
No 131
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=80.30 E-value=0.54 Score=49.97 Aligned_cols=79 Identities=24% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH----------HHhHHhhHHHHhhhhHHHHHHHHHHHHHHh-hhHHHHHHHHHhh
Q 018954 183 KSQVNAVHLKLDELKRLAAEKDSLIK----------STQLQLSDAKIKLADKQAALEKSQWEAMTV-SRKAEKLQEEVES 251 (348)
Q Consensus 183 ~~em~a~~akvDELr~qlaeKe~lik----------Stq~QLsdaki~LadKqAaLEKlewEa~ts-n~Kve~LQ~dl~s 251 (348)
..++..++.+|+++++.+.+-..... -...+|++++-.+..++..++.++-++.++ +.||.+|+..|..
T Consensus 508 ~~~~~~lq~qle~lq~~l~~~~~~~~d~~~lk~~le~~~~~l~e~~~e~~~~~~~le~l~~~~~~~~~~ki~~Le~~L~~ 587 (713)
T PF05622_consen 508 NEKILELQSQLEELQKSLQEQGSKSEDSSELKQKLEEHLEKLRELKDELQKKREQLEELEQELNQSLSQKIEELEEALQK 587 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 35666777777777776655433322 233466777777788888888888888887 8999999999999
Q ss_pred hhhhHHHHHH
Q 018954 252 MQGEMSSFMQ 261 (348)
Q Consensus 252 m~~EIsslm~ 261 (348)
.+.|+.+.-.
T Consensus 588 k~~e~~~~ee 597 (713)
T PF05622_consen 588 KEEEMRAMEE 597 (713)
T ss_dssp ----------
T ss_pred hHHHHHhHHH
Confidence 9888876654
No 132
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=80.23 E-value=12 Score=29.59 Aligned_cols=50 Identities=24% Similarity=0.369 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018954 153 EELVALREQVEDLQRKM-----------FEKDELLKSLESSKSQVNAVHLKLDELKRLAAE 202 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL-----------~EKDelLkSae~~~~em~a~~akvDELr~qlae 202 (348)
-++.+||+.++-+-+|+ .|.|.++.++.....++..|.++++.|++++.+
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777666665 466777777777777777777777777777544
No 133
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=80.05 E-value=55 Score=30.96 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 241 KAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 241 Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
=-+.+..||.||+.-++.|..-|+++-
T Consensus 77 erdq~~~dL~s~E~sfsdl~~ryek~K 103 (207)
T PF05010_consen 77 ERDQAYADLNSLEKSFSDLHKRYEKQK 103 (207)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345688899999999999999998755
No 134
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.84 E-value=86 Score=33.12 Aligned_cols=122 Identities=21% Similarity=0.278 Sum_probs=67.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh----hHHH
Q 018954 148 SEKEIEELVALREQVEDLQRKMFEKDELLKSLESS-----KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQL----SDAK 218 (348)
Q Consensus 148 ~~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~-----~~em~a~~akvDELr~qlaeKe~likStq~QL----sdak 218 (348)
...+-+|+-.|.++|++|+++|.+=--...++..- +...+.....+..|+-.+..=+.-+.++++|. ..-+
T Consensus 168 ~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~ 247 (446)
T KOG4438|consen 168 VEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLK 247 (446)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34677899999999999999998755555554433 22222233334444444444444444333332 2233
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhhhc
Q 018954 219 IKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKN 269 (348)
Q Consensus 219 i~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it~N 269 (348)
-.+++|...|.+..-=..+--.|..=|++.|.+|+.=+.-|++...+|+.+
T Consensus 248 ~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~ 298 (446)
T KOG4438|consen 248 EALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSD 298 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555322222334555666666666666666666666666633
No 135
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.59 E-value=80 Score=32.58 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=24.5
Q ss_pred hhhhhHHHhhhhcC--CCcccccceeeecCCCh
Q 018954 63 IVPLVQSLIDRKAS--SSFTRRGSMIYTKTPSR 93 (348)
Q Consensus 63 mVPLveSlmdrk~~--~sftRr~SmiYT~aP~r 93 (348)
.|-|+|-+|-+-+. +.|+|+.+=+++|-|.-
T Consensus 124 Lv~Liq~l~a~f~~~pP~ys~~~~~~p~p~p~~ 156 (365)
T KOG2391|consen 124 LVGLIQELIAAFSEDPPVYSRSLPSPPPPYPQT 156 (365)
T ss_pred HHHHHHHHHHHhcCCCccccCCCCCCCCCCCcc
Confidence 35677888876655 99999999988888873
No 136
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=78.86 E-value=46 Score=29.43 Aligned_cols=115 Identities=19% Similarity=0.227 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhh
Q 018954 153 EELVALREQVEDLQRKMFEKDELLKSLESS-----------KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKL 221 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EKDelLkSae~~-----------~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~L 221 (348)
-+--.|+-+...|..|+-||..=|.-+... +..+..+...+..++.++.+++..+.....+|..++...
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r 121 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKER 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888888888888777666554 477888889999999999999999999999999999998
Q ss_pred hhHHHHHHHHH--HHHHHhhhH---HHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 222 ADKQAALEKSQ--WEAMTVSRK---AEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 222 adKqAaLEKle--wEa~tsn~K---ve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
..-.....+|. ++.+....= -++....+..++.+|..+...++-++
T Consensus 122 ~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~ 172 (177)
T PF13870_consen 122 DKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILE 172 (177)
T ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777754 443322111 12233444555556665555555444
No 137
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=78.72 E-value=17 Score=34.65 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHH
Q 018954 182 SKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMT 237 (348)
Q Consensus 182 ~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~t 237 (348)
..|++.- |..|+.||+.+.+.|.-++.+...+.+||....+..+.--..|+|+..
T Consensus 24 ~lNd~TG-Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~ 78 (207)
T PF05546_consen 24 ALNDVTG-YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNE 78 (207)
T ss_pred HHHhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 899999999999999999999999999999999999988889998874
No 138
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=78.61 E-value=4.2 Score=34.34 Aligned_cols=70 Identities=26% Similarity=0.387 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQ 225 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKq 225 (348)
+...+...||+|-..|.| ++=+-+..-.-+-..+..+++.|.+++.|++.+|.+.|.||.+-|..+..+.
T Consensus 16 ~~~~ie~ElEeLTasLFe--EAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~~~ 85 (100)
T PF06428_consen 16 EKEQIESELEELTASLFE--EANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMESME 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT--
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344566666777766653 3333333333445566789999999999999999999999999988776643
No 139
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=78.59 E-value=48 Score=35.70 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHh
Q 018954 155 LVALREQVEDLQRKMFEKDELLKSLESSK------SQVNAVHLKLDELKRLAAE 202 (348)
Q Consensus 155 l~~LreQVeeLqkKL~EKDelLkSae~~~------~em~a~~akvDELr~qlae 202 (348)
+.-|.+|+..|+++|..-|..|..-.... .+..++..++.+|+.|+++
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~ 322 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNE 322 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44588999999999999999988766541 2334444445555555444
No 140
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=78.50 E-value=31 Score=27.43 Aligned_cols=65 Identities=23% Similarity=0.382 Sum_probs=36.4
Q ss_pred HHHHHHhhHHHHHHHhHH---hhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 196 LKRLAAEKDSLIKSTQLQ---LSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 196 Lr~qlaeKe~likStq~Q---Lsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
|.+.|+|||..|.-+..+ |+.....+.+ .+-||--.+.....-+..|...++..+.+|.+|...+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~---~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNN---TIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788899888776643 3333333222 2334444444445555555566666666666665544
No 141
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.47 E-value=86 Score=36.90 Aligned_cols=67 Identities=22% Similarity=0.245 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhH
Q 018954 150 KEIEELVALREQVEDLQRKMFE-KDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSD 216 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~E-KDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsd 216 (348)
+--.|+..|.++.+.++++|-+ ++++=+..+-..+++..+.+++--+..++-+..+-++-.+++|..
T Consensus 444 ~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~ 511 (1293)
T KOG0996|consen 444 KCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDI 511 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555554432 222222222223444444444444444444444444444444443
No 142
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=78.37 E-value=66 Score=36.85 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=15.6
Q ss_pred HHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHH
Q 018954 212 LQLSDAKIKLADKQAALEKSQWEAMTVSRKAE 243 (348)
Q Consensus 212 ~QLsdaki~LadKqAaLEKlewEa~tsn~Kve 243 (348)
.|+++.+..+.+.+..+..+.-++.....+.+
T Consensus 823 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le 854 (1201)
T PF12128_consen 823 EQLRDLEQELQELEQELNQLQKEVKQRRKELE 854 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544444444333
No 143
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=78.30 E-value=85 Score=38.32 Aligned_cols=85 Identities=20% Similarity=0.314 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH--HHHHHHhhhHHHHHHHHHhhhhhhH
Q 018954 179 LESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS--QWEAMTVSRKAEKLQEEVESMQGEM 256 (348)
Q Consensus 179 ae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKl--ewEa~tsn~Kve~LQ~dl~sm~~EI 256 (348)
++.++.+|..|.+.-..|...+...+..+.-+-.+|+-++.+++--.+-|+.| |-++++.. -.+|..+++++-.|.
T Consensus 698 ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t--~~rL~~e~~~l~~e~ 775 (1822)
T KOG4674|consen 698 LELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKET--EERLSQELEKLSAEQ 775 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 34445666666666667777777777777777788888887777666666654 33333332 346777777777777
Q ss_pred HHHHHHHHH
Q 018954 257 SSFMQIFEG 265 (348)
Q Consensus 257 sslm~~fe~ 265 (348)
.+||..+..
T Consensus 776 ~~L~~~l~~ 784 (1822)
T KOG4674|consen 776 ESLQLLLDN 784 (1822)
T ss_pred HHHHHHHHH
Confidence 777765533
No 144
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=78.00 E-value=73 Score=37.20 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 018954 300 MQRMEEAREAYITAVAMAKE 319 (348)
Q Consensus 300 ~ekmE~aR~aY~aAvaaAKe 319 (348)
+.....++..|..+..++.+
T Consensus 444 L~~~~~~~e~a~~~~~~~~~ 463 (1353)
T TIGR02680 444 LRRRDDVADRAEATHAAARA 463 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444556666555554443
No 145
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=77.42 E-value=3.2 Score=34.31 Aligned_cols=64 Identities=22% Similarity=0.353 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHhHHhhHHHH
Q 018954 156 VALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKD---SLIKSTQLQLSDAKI 219 (348)
Q Consensus 156 ~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe---~likStq~QLsdaki 219 (348)
..++.|+..|+.++..+...+..++....++..+..+++++++.+-... .||..++..-..+.+
T Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~lP~~~~~~~ll~~l~~~A~~~gv 68 (144)
T PF04350_consen 2 KTLQAQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELLKKLPAEEEIPSLLEDLNRLAKKSGV 68 (144)
T ss_dssp ----------HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHHHCTTGGGHHHHHHHHHHHHHHHTT-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHCCC
Confidence 4577888899999988888888888888888888888888888775543 444444444433333
No 146
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=77.03 E-value=95 Score=33.63 Aligned_cols=67 Identities=25% Similarity=0.240 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhh----------HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 018954 191 LKLDELKRLAAEKDSLIKSTQLQLSDAKIKLAD----------KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 257 (348)
Q Consensus 191 akvDELr~qlaeKe~likStq~QLsdaki~Lad----------KqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIs 257 (348)
.++..|+.+..+||.-|+++|++..+-|.++-. |.+--|+|-+|+-+-+-+.++|...|.+-+-|+.
T Consensus 330 g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq 406 (622)
T COG5185 330 GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQ 406 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHH
Confidence 456778999999999999999998888776653 4556667777777777777878777776655554
No 147
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=76.88 E-value=60 Score=30.47 Aligned_cols=92 Identities=13% Similarity=0.252 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH
Q 018954 156 VALREQVEDLQRKMFEKDELLKSLESS----KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS 231 (348)
Q Consensus 156 ~~LreQVeeLqkKL~EKDelLkSae~~----~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKl 231 (348)
-.|.-.++++...|...-..+...+.. ..++..|...++.|.+++. -.-+--+++
T Consensus 20 ~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~---------------------~~~~~~~~l 78 (264)
T PF06008_consen 20 YKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKAT---------------------KVSRKAQQL 78 (264)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHH
Confidence 345555666666666555544432222 2334444444444443332 222233456
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhhh
Q 018954 232 QWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIK 268 (348)
Q Consensus 232 ewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it~ 268 (348)
...+.....++..|..++..+...|..+...+..+..
T Consensus 79 ~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 79 NNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 6677777888888888888888888888888877775
No 148
>PRK00106 hypothetical protein; Provisional
Probab=76.77 E-value=72 Score=34.08 Aligned_cols=46 Identities=9% Similarity=0.180 Sum_probs=24.8
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHH
Q 018954 214 LSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSF 259 (348)
Q Consensus 214 Lsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIssl 259 (348)
|....-.|..+...|++-+.++-.....++..+.+++..+.++..+
T Consensus 106 L~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~ 151 (535)
T PRK00106 106 LTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKL 151 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555555555555555555543
No 149
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=76.75 E-value=63 Score=36.05 Aligned_cols=19 Identities=42% Similarity=0.513 Sum_probs=11.8
Q ss_pred CCCCcchhhhhhhhhhhhh
Q 018954 48 TNSNVDRDLYKDLVEIVPL 66 (348)
Q Consensus 48 ~~gnVDr~L~~dLVEmVPL 66 (348)
..+.+|=.|.-|.+||=-|
T Consensus 373 ~~~~~~i~LMDDFlEmEkL 391 (769)
T PF05911_consen 373 TISSSDIDLMDDFLEMEKL 391 (769)
T ss_pred CCccccHHHHHHHHHHHHH
Confidence 3355666677777776444
No 150
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=76.56 E-value=8 Score=39.55 Aligned_cols=163 Identities=23% Similarity=0.228 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHH--------
Q 018954 157 ALREQVEDLQRKMFEKDELLK-----------SLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDA-------- 217 (348)
Q Consensus 157 ~LreQVeeLqkKL~EKDelLk-----------Sae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsda-------- 217 (348)
.|-=||+-|+.-|.|||+-|- .++-.+--+.+|+.++.||+..|.-+|-||+-.++-+-..
T Consensus 144 nl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRdeliee~Gl~~I~~~t~~g~~s 223 (405)
T KOG2010|consen 144 NLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRDELIEEHGLVIIPDGTPNGDVS 223 (405)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCeEeccCCCCCcccc
Confidence 344578999999999998873 2333356678999999999999999999998644322100
Q ss_pred ------HHhhhhHHHHHHHHHH----HHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhhhcCCCCCCCCCCCCCccccC
Q 018954 218 ------KIKLADKQAALEKSQW----EAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKNDSTVNADDDYDIKPYYSD 287 (348)
Q Consensus 218 ------ki~LadKqAaLEKlew----Ea~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it~N~S~~~~ded~d~~~~~~e 287 (348)
-|... -+.+-+-++. ++-. ...+|-+.++.....|-.+..+++.-. .+.+..|..|..+.
T Consensus 224 ~~~v~g~I~~~-~~~a~~~te~~~~~~~~~---~~~~lag~~e~~~sqi~~~~~q~e~~r------~~~~~~d~t~~~l~ 293 (405)
T KOG2010|consen 224 HEPVAGAITVV-SQEAAQVLESAGEGPLDV---RLRKLAGEKEELLSQIRKLKLQLEEER------QKCSRNDGTVGDLA 293 (405)
T ss_pred cCccccceeec-chhHHHHHHHhccCCCch---hhhhhhhhHHHHHHHHHHHHHHHHHHH------hccCcccCCCCCCc
Confidence 00000 0111111111 1100 011333333333334433333332211 12223345667777
Q ss_pred CCCCCCCCChHHHHH-HHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 018954 288 YLSDIDDLDDVEMQR-MEEAREAYITAVAMAKEKQDEESMATAAR 331 (348)
Q Consensus 288 ~l~~~de~~~~e~ek-mE~aR~aY~aAvaaAKenp~eEsl~~aAe 331 (348)
+++-.|+++.+.+.+ .+..-.-|..-|+ +...+--++.-++.
T Consensus 294 ~~~n~sdl~~~~~~~da~rq~~eq~g~v~--~~~~d~t~~~d~~~ 336 (405)
T KOG2010|consen 294 GLQNGSDLQFIEMQRDANRQISEYKFKLS--KAEQDITTLEQSIS 336 (405)
T ss_pred cccchhHHHHHHHHHHHHHHHHHhhhhhh--hhhccchhHHHHHH
Confidence 888888888776655 2222234555554 67777666665543
No 151
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=76.52 E-value=21 Score=29.64 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHH
Q 018954 224 KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 264 (348)
Q Consensus 224 KqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe 264 (348)
...|.+-++.-+..=++-.++|+.++..+..++..++..++
T Consensus 84 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 84 AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555666665555566667777777777777777766654
No 152
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=75.97 E-value=77 Score=36.66 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHHHh
Q 018954 239 SRKAEKLQEEVESMQGEMSSFMQIFEGL 266 (348)
Q Consensus 239 n~Kve~LQ~dl~sm~~EIsslm~~fe~i 266 (348)
..+++.||.||....--|-.|-.=++-|
T Consensus 324 EERaesLQ~eve~lkEr~deletdlEIL 351 (1243)
T KOG0971|consen 324 EERAESLQQEVEALKERVDELETDLEIL 351 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666555555555544444433
No 153
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=75.94 E-value=20 Score=35.08 Aligned_cols=98 Identities=17% Similarity=0.267 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHH
Q 018954 156 VALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEA 235 (348)
Q Consensus 156 ~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa 235 (348)
.=++.+++.++.+|.+....|.. ...++..++++|..|+.++.+...-.+.++.+....+..|..-+..+..|.-|-
T Consensus 217 ~P~~~~l~~a~~~l~~~~~~L~~---~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~ 293 (344)
T PF12777_consen 217 EPKRQKLEEAEAELEEAEEQLAE---KQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEK 293 (344)
T ss_dssp CHHHHHHHHCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchh
Confidence 34666666666666555554443 344555667777777777766555555566666666666666666776666666
Q ss_pred HHhhhHHHHHHHHHhhhhhhH
Q 018954 236 MTVSRKAEKLQEEVESMQGEM 256 (348)
Q Consensus 236 ~tsn~Kve~LQ~dl~sm~~EI 256 (348)
..=...+..+...+..+-+++
T Consensus 294 ~RW~~~~~~l~~~~~~l~GD~ 314 (344)
T PF12777_consen 294 ERWSEQIEELEEQLKNLVGDS 314 (344)
T ss_dssp HCCHCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcccHHHH
Confidence 666677787888887777765
No 154
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=75.68 E-value=76 Score=33.40 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=18.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 018954 217 AKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 257 (348)
Q Consensus 217 aki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIs 257 (348)
..-.|..+...|++-+.++-...+.+++.+.+++.+..++.
T Consensus 88 Ree~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~ 128 (514)
T TIGR03319 88 REETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELE 128 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444
No 155
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=75.63 E-value=42 Score=28.52 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 223 DKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 223 dKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
+..-|++-++.-+..-++..++|+.++..++.++..+...++.+.
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555666666666666666666665555544
No 156
>PF13166 AAA_13: AAA domain
Probab=75.45 E-value=1.1e+02 Score=32.08 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhH
Q 018954 153 EELVALREQVEDLQRKMFEKD 173 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EKD 173 (348)
..+..|.+.++.|.+.|.+|-
T Consensus 329 ~~~~~l~~~l~~l~~~L~~K~ 349 (712)
T PF13166_consen 329 SAIEALKEELEELKKALEKKI 349 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355567777777777777774
No 157
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=75.27 E-value=1.2e+02 Score=32.25 Aligned_cols=84 Identities=15% Similarity=0.191 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHH-----------------HHHHHHHHHHHHhhhHH
Q 018954 180 ESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQ-----------------AALEKSQWEAMTVSRKA 242 (348)
Q Consensus 180 e~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKq-----------------AaLEKlewEa~tsn~Kv 242 (348)
.....+...+...+++.++...||-.+++..+.+|...=.-||++. ..|.=+.-.+..=.++|
T Consensus 77 ~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v 156 (475)
T PRK10361 77 TSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQV 156 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3345666777788888888888888888888888887766666542 12222344444445555
Q ss_pred HHHHH----HHhhhhhhHHHHHHHH
Q 018954 243 EKLQE----EVESMQGEMSSFMQIF 263 (348)
Q Consensus 243 e~LQ~----dl~sm~~EIsslm~~f 263 (348)
+++.. +-.++..+|..|+.+=
T Consensus 157 ~~~~~~~~~~~~~L~~qi~~L~~~n 181 (475)
T PRK10361 157 QDSFGKEAQERHTLAHEIRNLQQLN 181 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55442 2455556666665544
No 158
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=75.07 E-value=86 Score=33.02 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=24.8
Q ss_pred HHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 018954 197 KRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESM 252 (348)
Q Consensus 197 r~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm 252 (348)
+.++..+|.-+.--..+|....-.|..++..|++.+-++-.....+++++.++..+
T Consensus 75 e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~ 130 (514)
T TIGR03319 75 RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEEL 130 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444333344444444444444444444444444444444444444443
No 159
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.05 E-value=88 Score=30.72 Aligned_cols=90 Identities=17% Similarity=0.250 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhH
Q 018954 179 LESSKSQVNAVHLKLDELKRLAAE--KDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEM 256 (348)
Q Consensus 179 ae~~~~em~a~~akvDELr~qlae--Ke~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EI 256 (348)
-.++++++......+|-.-+.... +.++...++ +|+.-++.+-.+.+.|+..|.|+...|.=+.+=.+...-.+.||
T Consensus 17 ~d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar-~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqei 95 (246)
T KOG4657|consen 17 GDICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFAR-ALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEI 95 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777755544422 456777777 99999999999999999999999999987777777788889999
Q ss_pred HHHHHHHHHhhhc
Q 018954 257 SSFMQIFEGLIKN 269 (348)
Q Consensus 257 sslm~~fe~it~N 269 (348)
.+++.-++.++.|
T Consensus 96 k~~q~elEvl~~n 108 (246)
T KOG4657|consen 96 KATQSELEVLRRN 108 (246)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988888765
No 160
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=74.91 E-value=47 Score=27.54 Aligned_cols=116 Identities=16% Similarity=0.225 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhh
Q 018954 151 EIEELVALREQVEDLQRKMFEKDELLKSLESS---------------KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLS 215 (348)
Q Consensus 151 d~eEl~~LreQVeeLqkKL~EKDelLkSae~~---------------~~em~a~~akvDELr~qlaeKe~likStq~QLs 215 (348)
+..++..+.+++..+++.+..+...+..+... ...+..++..-+.|...+.++...++..-.++.
T Consensus 31 d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~ 110 (213)
T cd00176 31 DLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQ 110 (213)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666777777777776665555554443 366677888888888888888888877654433
Q ss_pred HHHHhhhhHHHHHHHHHH-----HHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 216 DAKIKLADKQAALEKSQW-----EAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 216 daki~LadKqAaLEKlew-----Ea~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
.-+. +-+...-+...+- ....+...+.++..++..+..+|......++.+.
T Consensus 111 ~~~~-~~~l~~wl~~~e~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 166 (213)
T cd00176 111 FFRD-ADDLEQWLEEKEAALASEDLGKDLESVEELLKKHKELEEELEAHEPRLKSLN 166 (213)
T ss_pred HHHH-HHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 3222 1113333333332 2222456777777777777777776666665554
No 161
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=74.54 E-value=65 Score=35.41 Aligned_cols=31 Identities=13% Similarity=0.323 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 018954 223 DKQAALEKSQWEAMTVSRKAEKLQEEVESMQ 253 (348)
Q Consensus 223 dKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~ 253 (348)
.++--+++|+.+++...++++.|...+..+.
T Consensus 478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 478 ARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555677888899999999998888888776
No 162
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=74.51 E-value=29 Score=34.21 Aligned_cols=32 Identities=34% Similarity=0.410 Sum_probs=27.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018954 169 MFEKDELLKSLESSKSQVNAVHLKLDELKRLA 200 (348)
Q Consensus 169 L~EKDelLkSae~~~~em~a~~akvDELr~ql 200 (348)
..||++|++.++-+.++.++++..+..|+.+.
T Consensus 148 ~~EkeeL~~eleele~e~ee~~erlk~le~E~ 179 (290)
T COG4026 148 QKEKEELLKELEELEAEYEEVQERLKRLEVEN 179 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999998888877654
No 163
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=74.50 E-value=1e+02 Score=31.16 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 241 KAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 241 Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
.+..++.+++.++.+|+........+.
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~ 263 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGLT 263 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 677788888888888888877766654
No 164
>PRK12704 phosphodiesterase; Provisional
Probab=74.48 E-value=1.2e+02 Score=32.02 Aligned_cols=54 Identities=20% Similarity=0.208 Sum_probs=20.9
Q ss_pred HHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 018954 197 KRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVE 250 (348)
Q Consensus 197 r~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~ 250 (348)
+..+..+|.-+..-..+|......|..++..|++.+-++-.....+++++.+++
T Consensus 81 e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~ 134 (520)
T PRK12704 81 RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELE 134 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443333333333333333444444444333333333333333333333
No 165
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=74.37 E-value=74 Score=29.54 Aligned_cols=115 Identities=21% Similarity=0.250 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHhHHhhHHHHhhhhHHHHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSL-IKSTQLQLSDAKIKLADKQAAL 228 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~l-ikStq~QLsdaki~LadKqAaL 228 (348)
.-.+|+..|++++-..|.+..+-+--|+-. ..+|.-+..++.-|++.+.+|.-. ..-.+.+|+.+...|.+..-.+
T Consensus 65 ~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~---~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki 141 (194)
T PF15619_consen 65 RHNEEVRVLRERLRKSQEQERELERKLKDK---DEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKI 141 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888887777776655444433 456666777777777765554433 4455889999999999888777
Q ss_pred HHHHHHHHHhhh--H--HHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 229 EKSQWEAMTVSR--K--AEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 229 EKlewEa~tsn~--K--ve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
..|+..+--.++ + ...-......++.++..++.-++.|.
T Consensus 142 ~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~ 184 (194)
T PF15619_consen 142 QELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLN 184 (194)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777665443333 2 33345567778888888887776654
No 166
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=74.33 E-value=1.1e+02 Score=32.75 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018954 229 EKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 265 (348)
Q Consensus 229 EKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~ 265 (348)
+-||.|-.-.-+.++-|+..|.++|.+|.--...+.+
T Consensus 528 ~elq~eq~~t~~a~epL~~~la~lq~~I~d~~e~i~~ 564 (583)
T KOG3809|consen 528 QELQNEQAATFGASEPLYNILANLQKEINDTKEEISK 564 (583)
T ss_pred HHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477777788889999999999999999977666644
No 167
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.27 E-value=16 Score=36.30 Aligned_cols=51 Identities=22% Similarity=0.410 Sum_probs=34.1
Q ss_pred CCCCCCCCCCCccccchhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 018954 127 KNANSNQDSDSFSIFSSRALVSEKEIEELVALREQVEDLQRKMFEKDELLKSL 179 (348)
Q Consensus 127 k~~~~~q~~en~s~~~s~~~~~~kd~eEl~~LreQVeeLqkKL~EKDelLkSa 179 (348)
+.+.++.|++.|.-+..+++..- -.-+..|.|.|--|++-|.+||-++=.-
T Consensus 201 ~~~~n~~NG~~f~P~~D~~~~dh--~V~i~~lkeeia~Lkk~L~qkdq~ileK 251 (305)
T KOG3990|consen 201 PLVPNNENGDGFPPFGDRDPGDH--MVKIQKLKEEIARLKKLLHQKDQLILEK 251 (305)
T ss_pred CccCCCCCCCcCCCCCCCCCcch--HHHHHHHHHHHHHHHHHHhhhHHHHHhh
Confidence 44556666777766655554433 2356778888888888888888776443
No 168
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=73.91 E-value=71 Score=29.11 Aligned_cols=113 Identities=14% Similarity=0.170 Sum_probs=74.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHH------------HHHHHH-------HHHHHHHHHHHHHHHHHHHhhHHHHH
Q 018954 148 SEKEIEELVALREQVEDLQRKMFEKDELL------------KSLESS-------KSQVNAVHLKLDELKRLAAEKDSLIK 208 (348)
Q Consensus 148 ~~kd~eEl~~LreQVeeLqkKL~EKDelL------------kSae~~-------~~em~a~~akvDELr~qlaeKe~lik 208 (348)
.+.-|.|...|+.++++++.++.+==+-. +=++-+ ..+|..+|.+..+++-+|+=+..--+
T Consensus 22 ~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~ 101 (159)
T PF05384_consen 22 AEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREK 101 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777776664321111 111111 48899999999998888876666666
Q ss_pred HHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHH
Q 018954 209 STQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFM 260 (348)
Q Consensus 209 Stq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm 260 (348)
.+...--+-...|...+..+|+.|-=+-.-+--.+=|.+||..+..-|..+.
T Consensus 102 qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~~ 153 (159)
T PF05384_consen 102 QLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDAQ 153 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666667778888888888877666666667777777777766665443
No 169
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=73.90 E-value=27 Score=31.19 Aligned_cols=69 Identities=23% Similarity=0.284 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh
Q 018954 180 ESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGE 255 (348)
Q Consensus 180 e~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~E 255 (348)
+..+.+...++.+++.++.||.+++--|+.++- ......+.|+.++.|+-+..+ ..++.+.++..|.+.
T Consensus 16 ~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~----~~~d~eeLk~~i~~lq~~~~~---~~~~~e~~l~~~~~~ 84 (155)
T PF06810_consen 16 EAPKAKVDKVKEERDNLKTQLKEADKQIKDLKK----SAKDNEELKKQIEELQAKNKT---AKEEYEAKLAQMKKD 84 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 345667777788888888888888888877665 345566777777777776654 444566666666654
No 170
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=73.84 E-value=93 Score=36.02 Aligned_cols=90 Identities=24% Similarity=0.254 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q 018954 171 EKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVE 250 (348)
Q Consensus 171 EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~ 250 (348)
.||-+-+.++-+..++.-+..+..+|+.+..+=++-|...+..|.++..++..+.--+.-++-++-..-.+.+.|+..-.
T Consensus 256 ~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~ 335 (1072)
T KOG0979|consen 256 AKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAE 335 (1072)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555666666677776666667777777776666655555544444444444333333333333333
Q ss_pred hhhhhHHHHH
Q 018954 251 SMQGEMSSFM 260 (348)
Q Consensus 251 sm~~EIsslm 260 (348)
.-+..|-...
T Consensus 336 ~rq~~i~~~~ 345 (1072)
T KOG0979|consen 336 KRQKRIEKAK 345 (1072)
T ss_pred HHHHHHHHHH
Confidence 3333443333
No 171
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=73.68 E-value=1.6e+02 Score=34.44 Aligned_cols=41 Identities=7% Similarity=0.159 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADK 224 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadK 224 (348)
.++...+.++++++.++.+...-+.-++.++..++..+...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 309 (1353)
T TIGR02680 269 TRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEAL 309 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555544444444
No 172
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=73.50 E-value=41 Score=36.60 Aligned_cols=72 Identities=24% Similarity=0.284 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 189 VHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 189 ~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
||.++|+...++.--..|...++.|+.+..--++.+...++.++||.- ++|+++...+.|....+..|+.|+
T Consensus 426 L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~-------~~Q~~~e~~~~e~~e~~~al~el~ 497 (607)
T KOG0240|consen 426 LYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELS-------EIQEENEAAKDEVKEVLTALEELA 497 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444455555555555555555555555542 334444444444444444444333
No 173
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=73.48 E-value=73 Score=34.42 Aligned_cols=118 Identities=17% Similarity=0.277 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh--------
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDE-------LLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQL-------- 214 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDe-------lLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QL-------- 214 (348)
+--+|+-+|++++++|+++|.-++= +-..-+.+--+++-++-+.|+|++.|-+.+.+++..=..|
T Consensus 341 ~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~ 420 (622)
T COG5185 341 LKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYD 420 (622)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4457899999999999988754431 1112222223444555555666666655555544322222
Q ss_pred --------hHHHHhhhh------------------HHHHHH--------HHHHHHHHhhhHHHHHHHHHhhhhhhHHHHH
Q 018954 215 --------SDAKIKLAD------------------KQAALE--------KSQWEAMTVSRKAEKLQEEVESMQGEMSSFM 260 (348)
Q Consensus 215 --------sdaki~Lad------------------KqAaLE--------KlewEa~tsn~Kve~LQ~dl~sm~~EIsslm 260 (348)
+-++|.-+. +.-.+- +++-++.+-..|--+||++++.+.-.|+-|.
T Consensus 421 sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~ 500 (622)
T COG5185 421 SLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELT 500 (622)
T ss_pred HHHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHH
Confidence 112222111 111222 2455566667777889999999999999999
Q ss_pred HHHHHhh
Q 018954 261 QIFEGLI 267 (348)
Q Consensus 261 ~~fe~it 267 (348)
..+++|.
T Consensus 501 ~~l~~~e 507 (622)
T COG5185 501 QILEKLE 507 (622)
T ss_pred HHHHHHH
Confidence 9998865
No 174
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=73.42 E-value=1.1e+02 Score=35.70 Aligned_cols=115 Identities=22% Similarity=0.319 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhh
Q 018954 153 EELVALREQVEDLQRKM-FEKDELLKSLESSK----------SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKL 221 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL-~EKDelLkSae~~~----------~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~L 221 (348)
-++-....+.+++-|+| .|++.|++..+... ++.+-+..-.+.+..+..+=---||-.+.-|++...++
T Consensus 425 ~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~el 504 (1195)
T KOG4643|consen 425 NQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLEL 504 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566667776665 46777777665542 22222223333344444444444888888899999999
Q ss_pred hhHHHHHHHHHHHHHH-------hhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 222 ADKQAALEKSQWEAMT-------VSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 222 adKqAaLEKlewEa~t-------sn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
-.++|...++..-..+ .+.|++.|.+++.+++-|=..|...+++|.
T Consensus 505 srl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk 557 (1195)
T KOG4643|consen 505 SRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLK 557 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999988887665554 578999999999988887777776666655
No 175
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.20 E-value=84 Score=31.02 Aligned_cols=86 Identities=26% Similarity=0.258 Sum_probs=66.9
Q ss_pred CCCCccccchhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhH
Q 018954 134 DSDSFSIFSSRALVSEKEIEELVALREQVEDLQRKMFEKDELLKS-LESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQL 212 (348)
Q Consensus 134 ~~en~s~~~s~~~~~~kd~eEl~~LreQVeeLqkKL~EKDelLkS-ae~~~~em~a~~akvDELr~qlaeKe~likStq~ 212 (348)
++.+|+=+++|-.+-..-.+==..+-++..+=|+.|.+|...|.. .+.++.=++.++..++.|..+.++++.+|=.+..
T Consensus 125 ~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa 204 (265)
T COG3883 125 NSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAA 204 (265)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888888777644433445667777778889888877764 5667888999999999999999999999988877
Q ss_pred HhhHHHH
Q 018954 213 QLSDAKI 219 (348)
Q Consensus 213 QLsdaki 219 (348)
.+..++-
T Consensus 205 ~~a~~~~ 211 (265)
T COG3883 205 KEASALG 211 (265)
T ss_pred HHHHhHH
Confidence 7666543
No 176
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=73.07 E-value=27 Score=33.25 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=56.8
Q ss_pred HHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhhhc
Q 018954 200 AAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKN 269 (348)
Q Consensus 200 laeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it~N 269 (348)
+..+.+.++.+++||.+-..+.+.++-..|+....-=.+....+.|...+.++.-++.+++..+.++.+|
T Consensus 76 ~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~ 145 (203)
T KOG3433|consen 76 ICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQET 145 (203)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3568889999999999999999999999999887777777777777777777777777777777776643
No 177
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=72.99 E-value=1.1 Score=49.07 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 018954 300 MQRMEEAREAYITAVAMAK 318 (348)
Q Consensus 300 ~ekmE~aR~aY~aAvaaAK 318 (348)
++.+|.+|+.+..=|..+.
T Consensus 316 ~EelEeaKKkL~~~L~el~ 334 (859)
T PF01576_consen 316 TEELEEAKKKLERKLQELQ 334 (859)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456666665555444443
No 178
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=72.95 E-value=1.1e+02 Score=34.23 Aligned_cols=107 Identities=16% Similarity=0.229 Sum_probs=58.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----------HHHHHhH
Q 018954 144 RALVSEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDS-----------LIKSTQL 212 (348)
Q Consensus 144 ~~~~~~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~-----------likStq~ 212 (348)
.+...+.-.+++..|..++++|++.|.+ +-.--.....++.+++..-|.|+.+|+..-. |=++++.
T Consensus 153 l~~Lt~aHq~~l~sL~~k~~~Le~~L~~---le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGe 229 (739)
T PF07111_consen 153 LSSLTQAHQEALASLTSKAEELEKSLES---LETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGE 229 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 3444555667888888888888887722 1111222346777777777877777765322 2222322
Q ss_pred HhhHHHHhhhhHHHHHHHHHHHH--HHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 213 QLSDAKIKLADKQAALEKSQWEA--MTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 213 QLsdaki~LadKqAaLEKlewEa--~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
|...... -..||. +.=+..|..|++|-+.+..-+.-|.--|
T Consensus 230 q~p~~~~----------~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRv 272 (739)
T PF07111_consen 230 QVPPEVH----------SQAWEPEREELLETVQHLQEDRDALQATAELLQVRV 272 (739)
T ss_pred hCCcccc----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211100 124555 4556677777777666655444333333
No 179
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=72.43 E-value=1.7e+02 Score=32.70 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=18.0
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhhhhHHHHH
Q 018954 231 SQWEAMTVSRKAEKLQEEVESMQGEMSSFM 260 (348)
Q Consensus 231 lewEa~tsn~Kve~LQ~dl~sm~~EIsslm 260 (348)
||-|+....+=+.+-++.|.+-+-|+.+|-
T Consensus 424 LE~ELr~l~~~A~E~q~~LnsAQDELvtfS 453 (717)
T PF09730_consen 424 LEKELRALSKLAGESQGSLNSAQDELVTFS 453 (717)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 666666666666665555666666665553
No 180
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=72.23 E-value=90 Score=36.15 Aligned_cols=59 Identities=25% Similarity=0.401 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 018954 150 KEIEELVALREQVEDLQRKMF-----------EKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIK 208 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~-----------EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~lik 208 (348)
.-.+|+..++.||.+|+-.+. +|+.+=+.+.....+|..++..+.+++..|.+++..|.
T Consensus 452 ele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~ 521 (1041)
T KOG0243|consen 452 ELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIIS 521 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777666554 44444455666667777777788888877777776553
No 181
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=72.04 E-value=57 Score=31.65 Aligned_cols=48 Identities=23% Similarity=0.202 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHH---HHhHHhhHHHHhhhhHHHHHHHHHHHH
Q 018954 188 AVHLKLDELKRLAAEKDSLIK---STQLQLSDAKIKLADKQAALEKSQWEA 235 (348)
Q Consensus 188 a~~akvDELr~qlaeKe~lik---Stq~QLsdaki~LadKqAaLEKlewEa 235 (348)
.+++.++..++++..-..|.+ -++.++.+++..+...++.++.++-.+
T Consensus 117 ~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~~~~~~~~~~~~~~~~~~~l 167 (370)
T PRK11578 117 QAEAELKLARVTLSRQQRLAKTQAVSQQDLDTAATELAVKQAQIGTIDAQI 167 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444433334443 245666777777766666665554443
No 182
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.86 E-value=47 Score=37.75 Aligned_cols=82 Identities=30% Similarity=0.318 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHH----------H-----------HHHHHHHHHHHHHHHHHHhhH
Q 018954 150 KEIEELVALREQVEDLQRKMF----EKDELLKSLESS----------K-----------SQVNAVHLKLDELKRLAAEKD 204 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~----EKDelLkSae~~----------~-----------~em~a~~akvDELr~qlaeKe 204 (348)
.-+-|+-+|+.+|-++|.||. ||-++=..+.+. + .=.+++..++|+|-++..-|-
T Consensus 483 ~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~ 562 (1118)
T KOG1029|consen 483 LMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKL 562 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577788888888887764 565554333332 1 223455667777777777777
Q ss_pred HHHHHHhHHhhHHHHhhhhHHHHHHHH
Q 018954 205 SLIKSTQLQLSDAKIKLADKQAALEKS 231 (348)
Q Consensus 205 ~likStq~QLsdaki~LadKqAaLEKl 231 (348)
.-|.+.+.||.+-|-.+.-+|.+.|++
T Consensus 563 ~eidi~n~qlkelk~~~~~q~lake~~ 589 (1118)
T KOG1029|consen 563 NEIDIFNNQLKELKEDVNSQQLAKEEL 589 (1118)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888887777777764
No 183
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.23 E-value=1.8e+02 Score=32.57 Aligned_cols=66 Identities=26% Similarity=0.315 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSF 259 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIssl 259 (348)
+++++.+.++-+|++.+..|..-...+-.++ -.++-+++||+|-.+.++..+-..+...+-+|.--
T Consensus 133 n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~----------dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~ 198 (716)
T KOG4593|consen 133 NQCQANLKKELELLREKEDKLAELGTLRNKL----------DSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQ 198 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554444433322222211 23566799999999999999888888877777633
No 184
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=71.18 E-value=68 Score=27.71 Aligned_cols=60 Identities=28% Similarity=0.332 Sum_probs=46.3
Q ss_pred HhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhhhc
Q 018954 210 TQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKN 269 (348)
Q Consensus 210 tq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it~N 269 (348)
.+.++..++..|+.|++.+++++----+...|+.+|+.++...+.++.....-|+.|+.+
T Consensus 115 ~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~ 174 (218)
T cd07596 115 ALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISER 174 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888889999988865433345789999999998888888888888888743
No 185
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=70.83 E-value=1.5e+02 Score=35.57 Aligned_cols=52 Identities=23% Similarity=0.294 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 018954 157 ALREQVEDLQRKMFE----KDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIK 208 (348)
Q Consensus 157 ~LreQVeeLqkKL~E----KDelLkSae~~~~em~a~~akvDELr~qlaeKe~lik 208 (348)
.|.--+++||.|... -..+.++|.+.+.+-..+..+++.|...+.-.+.|+.
T Consensus 1623 eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~ 1678 (1758)
T KOG0994|consen 1623 ELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLE 1678 (1758)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444432 2233444444444444445555555555554444443
No 186
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=70.55 E-value=1.9e+02 Score=32.57 Aligned_cols=92 Identities=25% Similarity=0.349 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHH-----------HHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhh
Q 018954 157 ALREQVEDLQRKMFEKDELLKS-----------LESS----KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKL 221 (348)
Q Consensus 157 ~LreQVeeLqkKL~EKDelLkS-----------ae~~----~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~L 221 (348)
+||.+++.+..++..|-+=+++ ++.- ..+|..+..++..||+++..|.-.|.-+|.+=--
T Consensus 545 ~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~----- 619 (786)
T PF05483_consen 545 QLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKA----- 619 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----
Confidence 4677777766666666544333 1111 2678889999999999999998888876654332
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh
Q 018954 222 ADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGE 255 (348)
Q Consensus 222 adKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~E 255 (348)
..||-+-|--+- -+...||++||.++.++..-
T Consensus 620 LKKk~~aE~kq~--~~~eikVn~L~~E~e~~kk~ 651 (786)
T PF05483_consen 620 LKKKITAESKQS--NVYEIKVNKLQEELENLKKK 651 (786)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhH
Confidence 233333222211 12245666666555555443
No 187
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=70.30 E-value=14 Score=38.37 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHhhHHHHHHHhHHhhHHHHhhhhHHHH
Q 018954 161 QVEDLQRKMFEKDELLKSLESSK-SQVNAVHLKLDELKRL-AAEKDSLIKSTQLQLSDAKIKLADKQAA 227 (348)
Q Consensus 161 QVeeLqkKL~EKDelLkSae~~~-~em~a~~akvDELr~q-laeKe~likStq~QLsdaki~LadKqAa 227 (348)
.+++||+.+..-+..|-.+.+-. ..-.+...-=|++.+. +..+..-+.++|.-|.+-|.+|||.-++
T Consensus 3 ~~~elq~e~~~~E~qL~~a~qkl~da~~~~e~dpD~~nk~~~~~R~~~v~~~~~Ki~elkr~lAd~v~~ 71 (428)
T PF00846_consen 3 TLEELQEEITQHEQQLVIARQKLKDAEKQYEKDPDDVNKSTLQQRQSVVSALQDKIAELKRQLADRVAA 71 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46667777777776666666543 2223333344555544 4455666667777777777777775554
No 188
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=70.18 E-value=27 Score=31.18 Aligned_cols=60 Identities=23% Similarity=0.341 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh
Q 018954 153 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQL 214 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QL 214 (348)
-++..++++++.++++.....+.-+.. .+.+......++++|++++.+++.=+..++.|.
T Consensus 125 ~~l~~~~~~~~~~~kq~~~~~~~~~~~--~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 125 KELIKLEEKLEALKKQAESASEAAEKL--LKEENKKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhh--hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666655444433333 345556666677777777766555555544443
No 189
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=70.13 E-value=1.2e+02 Score=30.33 Aligned_cols=110 Identities=19% Similarity=0.321 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHH
Q 018954 151 EIEELVALREQVEDLQRKMFEKDEL---LKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAA 227 (348)
Q Consensus 151 d~eEl~~LreQVeeLqkKL~EKDel---LkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAa 227 (348)
-.+.+..|+.++++-++.+-.++.+ +..+..++.+-..++.+|.+|-.+. +..--++-..-...-+...-
T Consensus 136 lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~ea-------qe~he~m~k~~~~~De~Rke 208 (294)
T COG1340 136 LVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEA-------QEYHEEMIKLFEEADELRKE 208 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555444332 2333333444444444444444443 22223333333334444444
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 228 LEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 228 LEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
-..+=.++....++++.+-+.+.+.+.+|--++..+-.|.
T Consensus 209 ade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~ 248 (294)
T COG1340 209 ADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALR 248 (294)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888888888888888888888776655
No 190
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=69.97 E-value=1.8e+02 Score=32.37 Aligned_cols=33 Identities=21% Similarity=0.106 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHH
Q 018954 230 KSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQI 262 (348)
Q Consensus 230 KlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~ 262 (348)
.|+-++=.+..+++++|..++....||.-|+..
T Consensus 570 ~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k 602 (698)
T KOG0978|consen 570 DLQIELEKSEAKLEQIQEQYAELELELEIEKFK 602 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555544444
No 191
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=69.61 E-value=84 Score=28.13 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 018954 183 KSQVNAVHLKLDELKRLAAE 202 (348)
Q Consensus 183 ~~em~a~~akvDELr~qlae 202 (348)
..+...++..||.|+.++.+
T Consensus 79 r~~~e~L~~eie~l~~~L~~ 98 (177)
T PF07798_consen 79 RSENEKLQREIEKLRQELRE 98 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555554
No 192
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=69.35 E-value=11 Score=38.06 Aligned_cols=117 Identities=19% Similarity=0.232 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHH-------HhhhhHH
Q 018954 153 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAK-------IKLADKQ 225 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdak-------i~LadKq 225 (348)
|.|.+|+--++.|+.-+. .+...+-.+..+++.+...|++++-.|..=..=|.+.|..|.+-. -.+.+.+
T Consensus 35 eRLsaLEssv~sL~~SVs---~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ 111 (326)
T PF04582_consen 35 ERLSALESSVASLSDSVS---SLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHS 111 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhh
Confidence 444444444444444332 122222333344444444444444444443334444444333322 2333344
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhhhcCCC
Q 018954 226 AALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKNDST 272 (348)
Q Consensus 226 AaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it~N~S~ 272 (348)
-+|-.|+-.+-.-..-|.-|+.+|+.+..-|+.|..-+.+|....+.
T Consensus 112 ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~~s~ 158 (326)
T PF04582_consen 112 SSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESGSSS 158 (326)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred hhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcCCCC
Confidence 55555666666667778899999999999999999999998854444
No 193
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=69.33 E-value=55 Score=29.26 Aligned_cols=70 Identities=24% Similarity=0.286 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 018954 178 SLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 257 (348)
Q Consensus 178 Sae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIs 257 (348)
.+-..+.++..++++++++++|......-.+.. ..=+....+..+++|..+++..+.|+.
T Consensus 119 r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~--------------------~~~~~~~~~~ei~~lk~el~~~~~~~~ 178 (192)
T PF05529_consen 119 RVHSLIKELIKLEEKLEALKKQAESASEAAEKL--------------------LKEENKKLSEEIEKLKKELEKKEKEIE 178 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--------------------hhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333445666666666666666654333222221 222333445566667777777777777
Q ss_pred HHHHHHHHhh
Q 018954 258 SFMQIFEGLI 267 (348)
Q Consensus 258 slm~~fe~it 267 (348)
.|..+-+++.
T Consensus 179 ~LkkQ~~~l~ 188 (192)
T PF05529_consen 179 ALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHH
Confidence 7777777766
No 194
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=69.23 E-value=1.1e+02 Score=33.63 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh
Q 018954 179 LESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQL 214 (348)
Q Consensus 179 ae~~~~em~a~~akvDELr~qlaeKe~likStq~QL 214 (348)
.|+.+.+...+...++.||++|..||..+.-+..++
T Consensus 540 ~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 540 AESCRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666666655555544
No 195
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=68.70 E-value=95 Score=28.40 Aligned_cols=63 Identities=17% Similarity=0.245 Sum_probs=32.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH
Q 018954 169 MFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS 231 (348)
Q Consensus 169 L~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKl 231 (348)
+--|+++++--.....+++.-...+..+.+.+..|+..+..-..+|...+-.|.+++..|...
T Consensus 56 ~eakee~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~ 118 (201)
T PF12072_consen 56 LEAKEEAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQR 118 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555666655556665555555555555544444444444444444444433
No 196
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=68.55 E-value=2.4e+02 Score=32.96 Aligned_cols=175 Identities=20% Similarity=0.195 Sum_probs=97.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------------------------------------HHHHHHHHHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESSK------------------------------------SQVNAVHLKL 193 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~------------------------------------~em~a~~akv 193 (348)
.--.||+-||+.-..|++++-.|.+.|..++..+ .+-+++....
T Consensus 178 ~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~ 257 (1072)
T KOG0979|consen 178 QYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAK 257 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHH
Confidence 3456899999999999999999999999888874 5556666666
Q ss_pred HHHHHHHHhhHHHHHHHhHHhhHHHHhhhh----HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhhhc
Q 018954 194 DELKRLAAEKDSLIKSTQLQLSDAKIKLAD----KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKN 269 (348)
Q Consensus 194 DELr~qlaeKe~likStq~QLsdaki~Lad----KqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it~N 269 (348)
|-++.++.+.+-=++ -+.+.++-|-+ --+-.-++..+..+.+.|+....+.+..++.++-.+....+.+-.+
T Consensus 258 ~r~k~~~r~l~k~~~----pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~ 333 (1072)
T KOG0979|consen 258 DRAKKELRKLEKEIK----PIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKA 333 (1072)
T ss_pred HHHHHHHHHHHHhhh----hhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655433221 12222222222 1222233677888888888888888888888877666665443211
Q ss_pred CCCC-----CCCCCCCCCccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Q 018954 270 DSTV-----NADDDYDIKPYYSDYLSDIDDLDDVEMQRMEEAREAYITAVAMAKEKQDEESMAT 328 (348)
Q Consensus 270 ~S~~-----~~ded~d~~~~~~e~l~~~de~~~~e~ekmE~aR~aY~aAvaaAKenp~eEsl~~ 328 (348)
--.- .+.++.+..-.++-.......+-..+-+-+=+.+.-|..++.-+++.-|.+.+.+
T Consensus 334 ~~~rq~~i~~~~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~id~~~~~~ 397 (1072)
T KOG0979|consen 334 AEKRQKRIEKAKKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRDSRQEIDAEQLKS 397 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 0000 0001111111111111111122222223344455567777777777777666554
No 197
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=68.51 E-value=1.1e+02 Score=33.56 Aligned_cols=83 Identities=25% Similarity=0.321 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHH
Q 018954 153 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQ 232 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKle 232 (348)
++..-|-+.++.|+++|.+||..+.+..++ ..+|+.++.+.+.+..++--++.+-+..+.+-|...+-.+
T Consensus 414 ~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL----------~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~ 483 (607)
T KOG0240|consen 414 EEEDILTERIESLYQQLDQKDDQINKQSQL----------MEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAK 483 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778899999999999999876655544 4556777777777887777777777777777776666666
Q ss_pred HHHHHhhhHHHHH
Q 018954 233 WEAMTVSRKAEKL 245 (348)
Q Consensus 233 wEa~tsn~Kve~L 245 (348)
-|+...-++.+.|
T Consensus 484 ~e~~e~~~al~el 496 (607)
T KOG0240|consen 484 DEVKEVLTALEEL 496 (607)
T ss_pred HHHHHHHHHHHHH
Confidence 6655554554444
No 198
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=68.39 E-value=1.3e+02 Score=29.87 Aligned_cols=61 Identities=20% Similarity=0.301 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 018954 150 KEIEELVALREQVEDLQRKM-----FEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKST 210 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL-----~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likSt 210 (348)
.....+..++.|++.|+... .+...+.........++..++..+..+.+++.....+++..
T Consensus 100 ~~~~~l~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~l~~~~ 165 (421)
T TIGR03794 100 ESYQKLTQLQEQLEEVRNYTGRLKEGRERHFQKSKEALEETIGRLREELAALSREVGKQRGLLSRG 165 (421)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556777787877776422 11222222333344555556666666655555555555544
No 199
>PRK11281 hypothetical protein; Provisional
Probab=68.34 E-value=1.4e+02 Score=34.66 Aligned_cols=50 Identities=22% Similarity=0.135 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQW 233 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlew 233 (348)
..++.+...+.+.+.++++=++.+-+.|.+...|+-.+.+-+..+..+..
T Consensus 128 q~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~ 177 (1113)
T PRK11281 128 SRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRN 177 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444433
No 200
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=67.96 E-value=26 Score=34.41 Aligned_cols=82 Identities=18% Similarity=0.298 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018954 186 VNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 265 (348)
Q Consensus 186 m~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~ 265 (348)
...++..|.=++..+.+=+.-+.-++.+|...+.+|++.++.|+.|+-+.-....+..+|+.++..++.-+..-..++.+
T Consensus 209 Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~ 288 (344)
T PF12777_consen 209 YYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISG 288 (344)
T ss_dssp HHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhh
Confidence 33444444555666666666666666677777777777777777777776666666777777777777666666666666
Q ss_pred hh
Q 018954 266 LI 267 (348)
Q Consensus 266 it 267 (348)
|+
T Consensus 289 L~ 290 (344)
T PF12777_consen 289 LS 290 (344)
T ss_dssp CH
T ss_pred hc
Confidence 55
No 201
>PRK00106 hypothetical protein; Provisional
Probab=67.34 E-value=1.8e+02 Score=31.17 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=27.2
Q ss_pred HHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 018954 199 LAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQ 253 (348)
Q Consensus 199 qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~ 253 (348)
.+..+|.-+..-..+|......|..++..|++.+-++-.....+++++.+++.+.
T Consensus 98 rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~ 152 (535)
T PRK00106 98 ELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLE 152 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444455555555555555555555555555444444444444443
No 202
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=67.04 E-value=61 Score=25.53 Aligned_cols=98 Identities=21% Similarity=0.223 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHH
Q 018954 157 ALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAE-KDSLIKSTQLQLSDAKIKLADKQAALEKSQWEA 235 (348)
Q Consensus 157 ~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlae-Ke~likStq~QLsdaki~LadKqAaLEKlewEa 235 (348)
.|+..++.|+.+.-+....+..++.. +..+....+..+.++.. =+.|+..++ ..+..+|.+|+++-
T Consensus 4 ~L~~~l~~l~~~~~~~~~~~~~l~~~---~~~l~~~~~~~~~~I~~~f~~l~~~L~----------~~e~~ll~~l~~~~ 70 (127)
T smart00502 4 ALEELLTKLRKKAAELEDALKQLISI---IQEVEENAADVEAQIKAAFDELRNALN----------KRKKQLLEDLEEQK 70 (127)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 46666777777766666655555544 33333444444444421 233332221 24567788888887
Q ss_pred HHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 236 MTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 236 ~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
.............+...-..+++...+.+.+-
T Consensus 71 ~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l 102 (127)
T smart00502 71 ENKLKVLEQQLESLTQKQEKLSHAINFTEEAL 102 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655555444444444444445555554443
No 203
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=66.71 E-value=1.1e+02 Score=30.97 Aligned_cols=78 Identities=26% Similarity=0.264 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHH-HHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQ-AALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQI 262 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKq-AaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~ 262 (348)
-+|..+.+.+.++++++.+=-..| +.+ +.+.+.+++.+ ++|++-.-.+.....+..++|.++..++-|..+.+..
T Consensus 313 p~~~~~~~q~~~~~~~~~~e~~~~--~~~--~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ 388 (458)
T COG3206 313 PQLVALEAQLAELRQQIAAELRQI--LAS--LPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSL 388 (458)
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHH--HHh--chhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHH
Confidence 344444555555554444322211 111 22335566666 8888888888999999999999999999999876666
Q ss_pred HHH
Q 018954 263 FEG 265 (348)
Q Consensus 263 fe~ 265 (348)
++.
T Consensus 389 ye~ 391 (458)
T COG3206 389 YET 391 (458)
T ss_pred HHH
Confidence 644
No 204
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=66.65 E-value=26 Score=30.59 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 018954 184 SQVNAVHLKLDELKRLAAE 202 (348)
Q Consensus 184 ~em~a~~akvDELr~qlae 202 (348)
.+|.++...||+|++||++
T Consensus 83 ~~~~~l~~rvd~Lerqv~~ 101 (108)
T COG3937 83 SEMDELTERVDALERQVAD 101 (108)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 6778888888888888875
No 205
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=66.38 E-value=1e+02 Score=29.94 Aligned_cols=9 Identities=11% Similarity=0.291 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 018954 159 REQVEDLQR 167 (348)
Q Consensus 159 reQVeeLqk 167 (348)
+.++.+++.
T Consensus 105 ~a~l~~~~~ 113 (370)
T PRK11578 105 EATLMELRA 113 (370)
T ss_pred HHHHHHHHH
Confidence 333333333
No 206
>smart00338 BRLZ basic region leucin zipper.
Probab=66.24 E-value=23 Score=26.58 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 224 KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 224 KqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
|++-+..||-++..-......|+..++.++.||..|..++
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777777777788888888888888888887765
No 207
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=65.65 E-value=1.7e+02 Score=30.50 Aligned_cols=82 Identities=12% Similarity=0.244 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHHHHHHHHH-------------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHh
Q 018954 150 KEIEELVALREQVEDLQRK-------------MFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEK-----DSLIKSTQ 211 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkK-------------L~EKDelLkSae~~~~em~a~~akvDELr~qlaeK-----e~likStq 211 (348)
.-++.+..+++||.-++.- -..|..+-.-...+.+++..|+..|++||+-|+.+ ...+++++
T Consensus 173 ~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~ 252 (424)
T PF03915_consen 173 EVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVA 252 (424)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHH
Confidence 4455666777777665541 12456666667777899999999999999999886 57889999
Q ss_pred HHhhHHHHhhhhHHHHHHHH
Q 018954 212 LQLSDAKIKLADKQAALEKS 231 (348)
Q Consensus 212 ~QLsdaki~LadKqAaLEKl 231 (348)
.+|..+...|.+++.-+..+
T Consensus 253 kdi~~a~~~L~~m~~~i~~~ 272 (424)
T PF03915_consen 253 KDISRASKELKKMKEYIKTE 272 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999888763
No 208
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=65.49 E-value=1.2e+02 Score=28.35 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=5.9
Q ss_pred HHHHHHHHhhhHHH
Q 018954 162 VEDLQRKMFEKDEL 175 (348)
Q Consensus 162 VeeLqkKL~EKDel 175 (348)
|+.|...+.|=+..
T Consensus 69 veqLe~ev~EAe~v 82 (188)
T PF05335_consen 69 VEQLEQEVREAEAV 82 (188)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 209
>PF14282 FlxA: FlxA-like protein
Probab=65.38 E-value=44 Score=27.97 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 018954 152 IEELVALREQVEDLQRKMFEKDE--LLKSLESSKSQVNAVHLKLDELKRLAAEKD 204 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDe--lLkSae~~~~em~a~~akvDELr~qlaeKe 204 (348)
-..+..|+.||..|+.+|-+=-. =| +.+.-..++..|+++|..|..+++...
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~-~~e~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDL-DAEQKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999998853111 11 556667778888888888887776443
No 210
>PRK11281 hypothetical protein; Provisional
Probab=65.28 E-value=1.3e+02 Score=35.05 Aligned_cols=87 Identities=15% Similarity=0.208 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHH
Q 018954 175 LLKSLESSKSQVNAVHLKLDELKRLAA-------EKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQE 247 (348)
Q Consensus 175 lLkSae~~~~em~a~~akvDELr~qla-------eKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~ 247 (348)
+=+.++..-.++..+.+.++++++... .+.++-+ .+.+|.+-...|++-|+.|..+.=.+..-++.-|+-|.
T Consensus 85 L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~q-LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~ 163 (1113)
T PRK11281 85 LKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQ-LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQA 163 (1113)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 334444444555555555555554211 2222222 33334444444444444444444444444444444444
Q ss_pred HHhhhhhhHHHHHHH
Q 018954 248 EVESMQGEMSSFMQI 262 (348)
Q Consensus 248 dl~sm~~EIsslm~~ 262 (348)
.+...+..++.....
T Consensus 164 ~lsea~~RlqeI~~~ 178 (1113)
T PRK11281 164 ALYANSQRLQQIRNL 178 (1113)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 211
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=64.85 E-value=2e+02 Score=30.65 Aligned_cols=98 Identities=16% Similarity=0.267 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHH---HHHHHhHHhhHHHHhhhhHHHHHHHHHH
Q 018954 161 QVEDLQRKMFEKDELLKSLESSKS----QVNAVHLKLDELKRLAAEKDS---LIKSTQLQLSDAKIKLADKQAALEKSQW 233 (348)
Q Consensus 161 QVeeLqkKL~EKDelLkSae~~~~----em~a~~akvDELr~qlaeKe~---likStq~QLsdaki~LadKqAaLEKlew 233 (348)
|++|++..|.-+-+-|++++.-+. |-++++..+.-.+. ||+. -..-+...+.-|+..|+-.++--..|+-
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~---e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqt 151 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQ---EREAVRQELAAARQNLAKAQQELARLTKQAQDLQT 151 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666555555555555432 22333333322222 1211 1112333444555555655555566777
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhHHHHHH
Q 018954 234 EAMTVSRKAEKLQEEVESMQGEMSSFMQ 261 (348)
Q Consensus 234 Ea~tsn~Kve~LQ~dl~sm~~EIsslm~ 261 (348)
++++-..---+|..+..++..+=+.|+.
T Consensus 152 rl~~l~~qr~ql~aq~qsl~a~~k~LQ~ 179 (499)
T COG4372 152 RLKTLAEQRRQLEAQAQSLQASQKQLQA 179 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777777766663
No 212
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=64.81 E-value=92 Score=26.80 Aligned_cols=97 Identities=15% Similarity=0.254 Sum_probs=65.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHH---
Q 018954 166 QRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKA--- 242 (348)
Q Consensus 166 qkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kv--- 242 (348)
++-+.-.+.+...+..+..++..+...+.-|+.++++.+.-+.+.+.....++..+...+.++....-|+..-...+
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~ 127 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQR 127 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566777777777788888888888888888888888888888777777777777777665555544333322
Q ss_pred -HHHHHHHhhhhhhHHHHHHH
Q 018954 243 -EKLQEEVESMQGEMSSFMQI 262 (348)
Q Consensus 243 -e~LQ~dl~sm~~EIsslm~~ 262 (348)
.....++--.+.||..|...
T Consensus 128 ~tq~~~e~rkke~E~~kLk~r 148 (151)
T PF11559_consen 128 KTQYEHELRKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 23445555566666665543
No 213
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=64.32 E-value=2.2e+02 Score=31.12 Aligned_cols=118 Identities=21% Similarity=0.282 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHhHHhhHH-
Q 018954 150 KEIEELVALREQVEDLQRKMFEK-------DELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLI----KSTQLQLSDA- 217 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EK-------DelLkSae~~~~em~a~~akvDELr~qlaeKe~li----kStq~QLsda- 217 (348)
.--+|+-.|+.++++|++++--+ +.+=..-+.+..+++.++.++|.|.+.+=+-+..| ++.+.++.+-
T Consensus 305 ~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~ 384 (581)
T KOG0995|consen 305 EKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLN 384 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45578999999999999887533 23334444455677777777777777776666533 3444333321
Q ss_pred ----HHhhh--------------------hHHHH--------HHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018954 218 ----KIKLA--------------------DKQAA--------LEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 265 (348)
Q Consensus 218 ----ki~La--------------------dKqAa--------LEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~ 265 (348)
+|.|. |-.+- +--++.++.+.-.+-..||..++.|..-|+.....+..
T Consensus 385 ~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~ 464 (581)
T KOG0995|consen 385 SLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGE 464 (581)
T ss_pred HHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 11111 11256677777777888899999888888888777765
Q ss_pred hh
Q 018954 266 LI 267 (348)
Q Consensus 266 it 267 (348)
|.
T Consensus 465 ~~ 466 (581)
T KOG0995|consen 465 IE 466 (581)
T ss_pred HH
Confidence 43
No 214
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=64.27 E-value=2.2 Score=45.45 Aligned_cols=110 Identities=22% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHH
Q 018954 158 LREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKR---LAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWE 234 (348)
Q Consensus 158 LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~---qlaeKe~likStq~QLsdaki~LadKqAaLEKlewE 234 (348)
|...|+-.++||-+=+.+=+.++.+..+-..+..+.-.|-. .+......|.....|+.+-+.+|.+..--.++++.|
T Consensus 313 lE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e 392 (713)
T PF05622_consen 313 LENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFE 392 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555545454444433333223222222 223355667777788888899999998899999999
Q ss_pred HHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 235 AMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 235 a~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
...-..|++.|+.+...+..|+.+|....+.|.
T Consensus 393 ~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~ 425 (713)
T PF05622_consen 393 NKQLEEKLEALEEEKERLQEERDSLRETNEELE 425 (713)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999888888888888888877665543
No 215
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=63.93 E-value=86 Score=36.51 Aligned_cols=105 Identities=17% Similarity=0.296 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH
Q 018954 151 EIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEK 230 (348)
Q Consensus 151 d~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEK 230 (348)
..+||..+...|..++..+-.++..++-.. .+...+...+-.+-+.+++|+..+-. +-+|-..+..-+.+.+-|+.
T Consensus 232 ~~~els~~~~ei~~~~~~~d~~e~ei~~~k---~e~~ki~re~~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~ 307 (1141)
T KOG0018|consen 232 ANDELSRLNAEIPKLKERMDKKEREIRVRK---KERGKIRRELQKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEE 307 (1141)
T ss_pred hhHHHHHHhhhhHHHHhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHH
Confidence 334455555555555555544444333322 22222223333333455556665555 55666677778888888888
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhhhhHHHH
Q 018954 231 SQWEAMTVSRKAEKLQEEVESMQGEMSSF 259 (348)
Q Consensus 231 lewEa~tsn~Kve~LQ~dl~sm~~EIssl 259 (348)
++..+-+..+....+++++..++-+|-++
T Consensus 308 ~~k~i~~~kk~~~~~~~~ie~~ek~l~av 336 (1141)
T KOG0018|consen 308 IEKDIETAKKDYRALKETIERLEKELKAV 336 (1141)
T ss_pred hhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888888888888888888888887654
No 216
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=63.80 E-value=1.1e+02 Score=27.42 Aligned_cols=73 Identities=23% Similarity=0.333 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHH
Q 018954 154 ELVALREQVEDLQRKM----FEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQA 226 (348)
Q Consensus 154 El~~LreQVeeLqkKL----~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqA 226 (348)
+-..|...|+-|.+.| -++.++..-+|+++.++..+..+|..|...+..=+.=+-++-++--+--.+|-.||.
T Consensus 18 e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~ 94 (140)
T PF10473_consen 18 EKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQE 94 (140)
T ss_pred hHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666665 356677777777777777777777776655544333333333333333333333333
No 217
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.42 E-value=61 Score=35.42 Aligned_cols=64 Identities=22% Similarity=0.261 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh--------------HHhhHHHHhhhhHHHHHHHHHHHHHH
Q 018954 174 ELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQ--------------LQLSDAKIKLADKQAALEKSQWEAMT 237 (348)
Q Consensus 174 elLkSae~~~~em~a~~akvDELr~qlaeKe~likStq--------------~QLsdaki~LadKqAaLEKlewEa~t 237 (348)
|.++.+++..-+...|..+|+.|+..+.||++-.+..+ +.|.+-.|-|--|.--.-|++.-+++
T Consensus 328 E~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkk 405 (654)
T KOG4809|consen 328 ERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKK 405 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888999999999999999999987655433 44455555554444444445554443
No 218
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=63.36 E-value=19 Score=28.06 Aligned_cols=34 Identities=15% Similarity=0.381 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHH
Q 018954 226 AALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSF 259 (348)
Q Consensus 226 AaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIssl 259 (348)
+-+++|.-+|-+-|.||..|++|+..|+.+|..-
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~a 36 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAA 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888999999999999999999999988643
No 219
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=63.28 E-value=72 Score=25.09 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSLESS 182 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~ 182 (348)
+.++..+..|+..|...+.+=+.+++.++.+
T Consensus 11 ~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l 41 (106)
T PF01920_consen 11 NQQLQQLEQQIQQLERQLRELELTLEELEKL 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566667777777777777666666666665
No 220
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=63.26 E-value=40 Score=27.39 Aligned_cols=63 Identities=27% Similarity=0.409 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--------------------------------------------------
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSK-------------------------------------------------- 183 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~-------------------------------------------------- 183 (348)
++..|+.+++.|+..+.|=+.++++++.+.
T Consensus 4 ~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~~l~ 83 (120)
T PF02996_consen 4 ELENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIEFLK 83 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHHHHH
Confidence 345667777777777776666666666652
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSD 216 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QLsd 216 (348)
.++..+.++++.+..++++...-|..++..+..
T Consensus 84 ~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 84 KRIKELEEQLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666777766666666666666555544
No 221
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=62.73 E-value=1.4e+02 Score=28.10 Aligned_cols=77 Identities=22% Similarity=0.340 Sum_probs=52.6
Q ss_pred HHHHHHhhhHHHHHHHHHH---------HHHHHHHHHHHHHHHHH----HHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH
Q 018954 164 DLQRKMFEKDELLKSLESS---------KSQVNAVHLKLDELKRL----AAEKDSLIKSTQLQLSDAKIKLADKQAALEK 230 (348)
Q Consensus 164 eLqkKL~EKDelLkSae~~---------~~em~a~~akvDELr~q----laeKe~likStq~QLsdaki~LadKqAaLEK 230 (348)
+|++.|.|=+.+|+-+... ..|..+++.-++.++.. ..+-+.|+..+...|.+..-+|.|.+.+|..
T Consensus 124 ~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~e 203 (264)
T PF06008_consen 124 DLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNE 203 (264)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666665333 35566666655555554 4577788999999999999999999999988
Q ss_pred HHHHHHHhhh
Q 018954 231 SQWEAMTVSR 240 (348)
Q Consensus 231 lewEa~tsn~ 240 (348)
.+-=+...++
T Consensus 204 A~~~~~ea~~ 213 (264)
T PF06008_consen 204 AQNKTREAED 213 (264)
T ss_pred HHHHHHHHHH
Confidence 6554444433
No 222
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=62.66 E-value=84 Score=25.61 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018954 225 QAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 265 (348)
Q Consensus 225 qAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~ 265 (348)
..|.+-++.-+-.-.+..++|+.++..+..+|..+...++.
T Consensus 86 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 86 EEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555566666666666655555544
No 223
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=62.53 E-value=1.9e+02 Score=33.79 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHH
Q 018954 183 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQW 233 (348)
Q Consensus 183 ~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlew 233 (348)
-+.....+.+.|.++.++..-+..|+.+|.++.......+++ ++++.+.
T Consensus 200 ~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~--~~~~~~~ 248 (1109)
T PRK10929 200 NNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAER--ALESTEL 248 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 344556667777777777777777777777777665555444 4455444
No 224
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=62.48 E-value=2.7e+02 Score=31.37 Aligned_cols=98 Identities=21% Similarity=0.230 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHH
Q 018954 153 EELVALREQVEDLQRKMFEK-----DELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAA 227 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EK-----DelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAa 227 (348)
-||-.||+.-+-|--+|--= -++-++=|....+...+..+.-.|.+.+.+++--+.++..||..|...+.+..-.
T Consensus 478 ~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~ee 557 (739)
T PF07111_consen 478 LELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEE 557 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 36666666655544443322 3344666777888889999999999999999999999999999999999888877
Q ss_pred HHHHHHHHHHhhhHHH-HHHHHHh
Q 018954 228 LEKSQWEAMTVSRKAE-KLQEEVE 250 (348)
Q Consensus 228 LEKlewEa~tsn~Kve-~LQ~dl~ 250 (348)
-+-+-.|+-..-...+ .||+.|+
T Consensus 558 a~~lR~EL~~QQ~~y~~alqekvs 581 (739)
T PF07111_consen 558 AAELRRELTQQQEVYERALQEKVS 581 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766554433 4444443
No 225
>PRK11546 zraP zinc resistance protein; Provisional
Probab=62.39 E-value=26 Score=31.61 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHH
Q 018954 157 ALREQVEDLQRKMFEKDELLKSLESS----KSQVNAVHLKLDELKRLAAEKDS 205 (348)
Q Consensus 157 ~LreQVeeLqkKL~EKDelLkSae~~----~~em~a~~akvDELr~qlaeKe~ 205 (348)
.-..+..+|+.+||.|..-|+.+-.+ .+.|+++..+|-.|+.+|.++-.
T Consensus 58 ~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 58 DFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999988666 36688888888888887777644
No 226
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=62.08 E-value=2.6 Score=46.40 Aligned_cols=81 Identities=25% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHH
Q 018954 183 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQI 262 (348)
Q Consensus 183 ~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~ 262 (348)
.++|+.+..++|...+...+=-..|+-+|.||.+.+..|.+-+.+.+.+.-.+..+..++..|+.+|..+++...+.+..
T Consensus 552 E~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~~a~r~ 631 (859)
T PF01576_consen 552 ESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREALEQAERA 631 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888999999998888888888899999999999999999999999999999999999999999999998888776554
Q ss_pred H
Q 018954 263 F 263 (348)
Q Consensus 263 f 263 (348)
-
T Consensus 632 r 632 (859)
T PF01576_consen 632 R 632 (859)
T ss_dssp -
T ss_pred H
Confidence 3
No 227
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=61.97 E-value=92 Score=25.85 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHH
Q 018954 228 LEKSQWEAMTVSRKAEKLQEEVESMQGEMSSF 259 (348)
Q Consensus 228 LEKlewEa~tsn~Kve~LQ~dl~sm~~EIssl 259 (348)
++.++-.+..-+++.+.|+..+..++..|..+
T Consensus 76 ~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 76 KETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666677777777777777665543
No 228
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=61.65 E-value=45 Score=31.58 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKS-LESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAK 218 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkS-ae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdak 218 (348)
|.+.|+-|+-+|-.+|..-+..-.+ .....+....+..++ |.|+++-+-||.+.+
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~----------EqLL~YK~~ql~~~~ 152 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREF----------EQLLDYKERQLRELE 152 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHH----------HHHHHHHHHHHHhhh
Confidence 5666777777776666544443333 112223333333333 345566666666554
No 229
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=61.55 E-value=1.1e+02 Score=32.03 Aligned_cols=103 Identities=16% Similarity=0.230 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH
Q 018954 155 LVALREQVEDLQRKMFEK---DELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS 231 (348)
Q Consensus 155 l~~LreQVeeLqkKL~EK---DelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKl 231 (348)
+..+|+..+.++++|..+ ...+..+-.+..+...+..++++|+++ +..+-+.++ .+.. -..+ ....|
T Consensus 4 ~k~ir~n~d~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~---rn~~sk~ig----~~~~-~~~~--~~~~l 73 (429)
T COG0172 4 LKLIRENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAE---RNELSKEIG----RALK-RGED--DAEEL 73 (429)
T ss_pred HHHhhhCHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHhh-ccch--hHHHH
Confidence 456778888888888877 344555666667777777777777743 333333333 1111 1111 45667
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 232 QWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 232 ewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
--|+..-+++++.+...+...+.++..++.-|-+|.
T Consensus 74 ~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi~ 109 (429)
T COG0172 74 IAEVKELKEKLKELEAALDELEAELDTLLLTIPNIP 109 (429)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCC
Confidence 778888899999999999999999999999998887
No 230
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.54 E-value=66 Score=28.24 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESS 182 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~ 182 (348)
++..|++|+.+|+..+..-..-|.++.+.
T Consensus 80 ei~~L~~el~~l~~~~k~l~~eL~~L~~~ 108 (169)
T PF07106_consen 80 EIKELREELAELKKEVKSLEAELASLSSE 108 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 48888888888888877766666665544
No 231
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=61.28 E-value=96 Score=25.85 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 018954 151 EIEELVALREQVEDLQRKMFEKDELLKSLESS 182 (348)
Q Consensus 151 d~eEl~~LreQVeeLqkKL~EKDelLkSae~~ 182 (348)
=..++..|+.+++.|+..+.|=+.++.+++.+
T Consensus 11 l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l 42 (129)
T cd00584 11 LQQEIEELQQELARLNEAIAEYEQAKETLETL 42 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666555555555
No 232
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=61.22 E-value=1.2e+02 Score=31.40 Aligned_cols=93 Identities=27% Similarity=0.310 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhH--HHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADK--QAALEKS 231 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadK--qAaLEKl 231 (348)
-|..|.+..++|.+.|...+= + +-..++..+....-+|.. +.++=.=.+.++.+|.+++.+|++. .-+.|=+
T Consensus 8 kl~~~~~r~~el~~~L~~p~v-~----~d~~~~~~lske~a~l~~-iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~ema 81 (363)
T COG0216 8 KLESLLERYEELEALLSDPEV-I----SDPDEYRKLSKEYAELEP-IVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMA 81 (363)
T ss_pred HHHHHHHHHHHHHHHhcCccc-c----cCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 345566677777777776651 1 112233333333333322 2222233567889999999999963 2334456
Q ss_pred HHHHHHhhhHHHHHHHHHhhh
Q 018954 232 QWEAMTVSRKAEKLQEEVESM 252 (348)
Q Consensus 232 ewEa~tsn~Kve~LQ~dl~sm 252 (348)
+-|+..-..+.+.|.++|..|
T Consensus 82 ~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 82 EEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 667766666666666665443
No 233
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=60.58 E-value=1.1e+02 Score=26.22 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=9.2
Q ss_pred HHHHHhhhhhhHHHHHHHHHH
Q 018954 245 LQEEVESMQGEMSSFMQIFEG 265 (348)
Q Consensus 245 LQ~dl~sm~~EIsslm~~fe~ 265 (348)
|..++..++.+|..|....+.
T Consensus 64 lr~e~~~~~~~~~~l~~~~~~ 84 (132)
T PF07926_consen 64 LREELQELQQEINELKAEAES 84 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 234
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=59.86 E-value=51 Score=33.09 Aligned_cols=62 Identities=24% Similarity=0.247 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHH---HH--------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHH
Q 018954 152 IEELVALREQVEDLQRKMFEKDEL---LK--------SLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQ 213 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDel---Lk--------Sae~~~~em~a~~akvDELr~qlaeKe~likStq~Q 213 (348)
.+++.+++++-|-|++-+.|=+-+ |+ |++.+...+|-+-.++-.|..+|-||+.|+.|+|-=
T Consensus 97 eddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRL 169 (333)
T KOG1853|consen 97 EDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRL 169 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 457888888888888766654332 32 456667889988899999999999999999998753
No 235
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=59.54 E-value=1.1e+02 Score=26.11 Aligned_cols=57 Identities=23% Similarity=0.319 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH----HHHHHHHhhhHHHHHHHH
Q 018954 192 KLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEK----SQWEAMTVSRKAEKLQEE 248 (348)
Q Consensus 192 kvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEK----lewEa~tsn~Kve~LQ~d 248 (348)
.|-.||.++.+-..-|..++.++..|+..|...+++.+- |+-|+-....++++|...
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555566666666666666665555432 556666666666666543
No 236
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=59.35 E-value=81 Score=28.94 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=8.4
Q ss_pred hHHHHHHHHHhhhhhhHH
Q 018954 240 RKAEKLQEEVESMQGEMS 257 (348)
Q Consensus 240 ~Kve~LQ~dl~sm~~EIs 257 (348)
.++++|+.++......+.
T Consensus 135 ~~i~~~~~~~~~~~~~an 152 (188)
T PF03962_consen 135 EKIEKLKEEIKIAKEAAN 152 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555554444444433
No 237
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=59.33 E-value=17 Score=33.35 Aligned_cols=44 Identities=32% Similarity=0.288 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh---HHhhHHHHhh
Q 018954 178 SLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQ---LQLSDAKIKL 221 (348)
Q Consensus 178 Sae~~~~em~a~~akvDELr~qlaeKe~likStq---~QLsdaki~L 221 (348)
|+|.++..+|.+.+.---|..+|.|||.|...+| .+|+|.|+.|
T Consensus 1 SLeD~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 1 SLEDFESKLNQAIERNALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--------------
T ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888899988888889999999999988877 6889999888
No 238
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=59.23 E-value=99 Score=25.33 Aligned_cols=28 Identities=25% Similarity=0.327 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLES 181 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~ 181 (348)
++..|..++..|.-.+.|=+-+++.++.
T Consensus 14 ~~~~l~~~~~~l~~~~~E~~~v~~EL~~ 41 (105)
T cd00632 14 QLQAYIVQRQKVEAQLNENKKALEELEK 41 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444444444444444444443
No 239
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=58.99 E-value=1.3e+02 Score=26.57 Aligned_cols=49 Identities=20% Similarity=0.344 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHH
Q 018954 157 ALREQVEDLQRKMFEKDELLKSLES----SKSQVNAVHLKLDELKRLAAEKDS 205 (348)
Q Consensus 157 ~LreQVeeLqkKL~EKDelLkSae~----~~~em~a~~akvDELr~qlaeKe~ 205 (348)
.|.++|-.|......|+.=+.++.. +..++-.+..+|.+++..+.+.+.
T Consensus 18 ~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~ 70 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4555555555555555555444432 234444444444444444444443
No 240
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=58.83 E-value=3e+02 Score=30.78 Aligned_cols=53 Identities=19% Similarity=0.144 Sum_probs=28.3
Q ss_pred hHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 211 QLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 211 q~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
|.|...-=+.|..+--.-=||=.|-+..++++..|.++.+-|.-.|.++-...
T Consensus 467 Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~ 519 (698)
T KOG0978|consen 467 QEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASV 519 (698)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444333334555666666677666666666666666554444
No 241
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.82 E-value=2.6e+02 Score=30.12 Aligned_cols=95 Identities=23% Similarity=0.354 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH----H
Q 018954 156 VALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEK----S 231 (348)
Q Consensus 156 ~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEK----l 231 (348)
.+++++..+|++-+-=|+.++.-+-...+-+.-|+.+|.++++++-+ .-.|-.+.++-|..|..-|-+ +
T Consensus 265 sq~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~-------ltqqwed~R~pll~kkl~Lr~~l~~~ 337 (521)
T KOG1937|consen 265 SQFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEE-------LTQQWEDTRQPLLQKKLQLREELKNL 337 (521)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 44555666666555555555555544444444455555544444433 333444444444444333222 3
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhhHHH
Q 018954 232 QWEAMTVSRKAEKLQEEVESMQGEMSS 258 (348)
Q Consensus 232 ewEa~tsn~Kve~LQ~dl~sm~~EIss 258 (348)
|-|... =++..+|..||.....||.+
T Consensus 338 e~e~~e-~~~IqeleqdL~a~~eei~~ 363 (521)
T KOG1937|consen 338 ETEDEE-IRRIQELEQDLEAVDEEIES 363 (521)
T ss_pred cchHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 344443 57889999999999999983
No 242
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=58.58 E-value=1.2e+02 Score=33.21 Aligned_cols=107 Identities=24% Similarity=0.284 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH-
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEK- 230 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEK- 230 (348)
+..+.+|+.++.+|++-..++-++++++. .-+.+|.+.++.+.+|+..|..+-.+=+.+|-.|.-+++.+..
T Consensus 364 ~A~l~~L~se~q~L~~~~~~r~e~~~~Lq-------~K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q~~~E~~~~ 436 (632)
T PF14817_consen 364 KASLNALRSECQRLKEAAAERQEALRSLQ-------AKWQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQSPAEAQEF 436 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhChHHHHHH
Confidence 34555666666666666666666665554 3456778888899999999999999999999988888876654
Q ss_pred HHHHHHHhhhHH-HHHHHHHhhhhhhHHHHHHHHHH
Q 018954 231 SQWEAMTVSRKA-EKLQEEVESMQGEMSSFMQIFEG 265 (348)
Q Consensus 231 lewEa~tsn~Kv-e~LQ~dl~sm~~EIsslm~~fe~ 265 (348)
.+.-++-....| ..-+.-.+.++-|++.|-+++.+
T Consensus 437 ~~~kl~P~~~~V~~~s~~l~~~ie~E~~~f~~~~l~ 472 (632)
T PF14817_consen 437 VQRKLVPQFEAVAPQSQELRDCIEREVRAFQAIPLN 472 (632)
T ss_pred HhcccCCcHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 444444433333 34455567889999999888765
No 243
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=58.19 E-value=1.5e+02 Score=27.27 Aligned_cols=100 Identities=21% Similarity=0.317 Sum_probs=50.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhh
Q 018954 145 ALVSEKEIEELVALREQVEDLQRKMFEKDELLKSLESSK---SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKL 221 (348)
Q Consensus 145 ~~~~~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~---~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~L 221 (348)
+-+...-+..+..|+.+|+.++.++.+-.+-|..+.... .+-..+-+++.+|+.++ +.++.+|. +-.-
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~-------~~l~~el~--~~~~ 131 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKEL-------KELKKELE--KYSE 131 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-------HHHHHHHH--HHHh
Confidence 333445555777777777777777777666666664432 12222222233333222 22222222 1111
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q 018954 222 ADKQAALEKSQWEAMTVSRKAEKLQEEVESMQG 254 (348)
Q Consensus 222 adKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~ 254 (348)
.|- ..++++..++..--..+++--..+..+..
T Consensus 132 ~Dp-~~i~~~~~~~~~~~~~anrwTDNI~~l~~ 163 (188)
T PF03962_consen 132 NDP-EKIEKLKEEIKIAKEAANRWTDNIFSLKS 163 (188)
T ss_pred cCH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 232 35667777776666666655555555443
No 244
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=57.48 E-value=39 Score=29.36 Aligned_cols=20 Identities=30% Similarity=0.702 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhhhHHHH
Q 018954 157 ALREQVEDLQRKMFEKDELL 176 (348)
Q Consensus 157 ~LreQVeeLqkKL~EKDelL 176 (348)
.|.|.|++|+..|.-|++|+
T Consensus 39 ~lkEEi~eLK~ElqRKe~Ll 58 (106)
T PF11594_consen 39 VLKEEINELKEELQRKEQLL 58 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666
No 245
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=57.48 E-value=15 Score=38.84 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018954 238 VSRKAEKLQEEVESMQGEMSSFMQIFEG 265 (348)
Q Consensus 238 sn~Kve~LQ~dl~sm~~EIsslm~~fe~ 265 (348)
+|.-+.++.+++.+++..+.+|....+.
T Consensus 81 T~d~~~~~~qqiAn~~lKv~~l~da~~t 108 (514)
T PF11336_consen 81 TNDDATEMRQQIANAQLKVESLEDAAET 108 (514)
T ss_pred ChHHHHHHHHHHHhhhhhHHHHhhHHhc
Confidence 4556666666666666666666665543
No 246
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=57.44 E-value=1.8e+02 Score=29.20 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=24.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhHH---HHHHHHHhhhhhhHHHHH
Q 018954 220 KLADKQAALEKSQWEAMTVSRKA---EKLQEEVESMQGEMSSFM 260 (348)
Q Consensus 220 ~LadKqAaLEKlewEa~tsn~Kv---e~LQ~dl~sm~~EIsslm 260 (348)
...+-+..|.+|+||+-.+...+ ++|+.....+..+|..-.
T Consensus 85 ~~~~H~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~ 128 (355)
T PF09766_consen 85 EDDEHQLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKK 128 (355)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888887443 344444445555554333
No 247
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=57.44 E-value=44 Score=27.11 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 018954 182 SKSQVNAVHLKLDELK 197 (348)
Q Consensus 182 ~~~em~a~~akvDELr 197 (348)
+..+.|.+.++|-.++
T Consensus 48 lr~~rN~~sk~I~~~~ 63 (108)
T PF02403_consen 48 LRAERNELSKEIGKLK 63 (108)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHhHHHHHHHHHh
Confidence 3333333333333333
No 248
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=57.29 E-value=93 Score=32.03 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhhhH
Q 018954 157 ALREQVEDLQRKMFEKD 173 (348)
Q Consensus 157 ~LreQVeeLqkKL~EKD 173 (348)
...+.|.+|+++|.+=+
T Consensus 68 ~~~~~~~~l~~~l~~l~ 84 (525)
T TIGR02231 68 PDPERLAELRKQIRELE 84 (525)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 34555666666554433
No 249
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.13 E-value=2.6e+02 Score=32.20 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=37.2
Q ss_pred HHHHHHhhHHHHHHHhHHhhHHH-------HhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHh
Q 018954 196 LKRLAAEKDSLIKSTQLQLSDAK-------IKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 266 (348)
Q Consensus 196 Lr~qlaeKe~likStq~QLsdak-------i~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~i 266 (348)
+-+++.+|+..|+|.+..-.+|. ..+.+++-.+|-+.. ..+-.+....+|.++-..+.+|+++-.-..++
T Consensus 756 l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~-l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~ 832 (970)
T KOG0946|consen 756 LTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKN-LSEESTRLQELQSELTQLKEQIQTLLERTSAA 832 (970)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566666777776665544332 234555555555544 55555555555555555555555544443333
No 250
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=56.99 E-value=2.8e+02 Score=29.83 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 018954 184 SQVNAVHLKLDELKRLAAE 202 (348)
Q Consensus 184 ~em~a~~akvDELr~qlae 202 (348)
..+..++.|++.+.+++.+
T Consensus 382 ~k~~q~q~k~~k~~kel~~ 400 (493)
T KOG0804|consen 382 RKLQQLQTKLKKCQKELKE 400 (493)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554443
No 251
>PF13514 AAA_27: AAA domain
Probab=56.70 E-value=3.5e+02 Score=30.83 Aligned_cols=36 Identities=31% Similarity=0.366 Sum_probs=19.3
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 232 QWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 232 ewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
+-++-.-...++.|+.++..+..++..+...++.|.
T Consensus 895 ~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~ 930 (1111)
T PF13514_consen 895 EAELEELEEELEELEEELEELQEERAELEQELEALE 930 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444555555555555555555555555554
No 252
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=56.58 E-value=1.1e+02 Score=32.00 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=8.3
Q ss_pred hHHhhHHHHhhhhHHHHHHHH
Q 018954 211 QLQLSDAKIKLADKQAALEKS 231 (348)
Q Consensus 211 q~QLsdaki~LadKqAaLEKl 231 (348)
+..|.....++++..+.|++|
T Consensus 86 ~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 86 ADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HhHHHHHHhhHHHHHHHHHHH
Confidence 333333334444444444333
No 253
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=56.13 E-value=41 Score=29.86 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=15.6
Q ss_pred HHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHh
Q 018954 235 AMTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 266 (348)
Q Consensus 235 a~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~i 266 (348)
+.|-..-+.+||.++...+.||..|+..++.+
T Consensus 89 i~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~ 120 (131)
T PF04859_consen 89 IKTYEIVVKKLEAELRAKDSEIDRLREKLDEL 120 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444555555555555555443
No 254
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=55.83 E-value=2e+02 Score=27.75 Aligned_cols=107 Identities=21% Similarity=0.300 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESS----KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALE 229 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~----~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLE 229 (348)
-+..++++++++-+---|++-..|++++. ...|+++.+++.|-++-.-+=|+ -.-+---+|+=+.+-||
T Consensus 26 rl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adr-------K~eEVarkL~iiE~dLE 98 (205)
T KOG1003|consen 26 RLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADR-------KYEEVARKLVIIEGELE 98 (205)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhHHH
Confidence 34455555555555555666666666654 35666666666666554333332 22333346777788888
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 230 KSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 230 KlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
..+--+=...-++..|.+|+..|...+-+|+..-+++.
T Consensus 99 ~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~ 136 (205)
T KOG1003|consen 99 RAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLE 136 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHh
Confidence 88888888889999999999999999999998877654
No 255
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.56 E-value=2.8e+02 Score=29.43 Aligned_cols=143 Identities=17% Similarity=0.233 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQW 233 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlew 233 (348)
.=-....++++.++++++|+---+++-- .++..+++++++.+.... .-.+-|+....+.+-|+.+.++.++.
T Consensus 36 ~q~~~l~~~ee~e~~~~~~~A~~~~~~k--kel~~~~~q~~~~k~~~~------~~~~eqi~~~~~~~q~e~~~~~~~~~ 107 (438)
T COG4487 36 DQSRILNTLEEFEKEANEKRAQYRSAKK--KELSQLEEQLINQKKEQK------NLFNEQIKQFELALQDEIAKLEALEL 107 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567889999999998866665554 566666677766643221 11122222223556666666666554
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhHHH-HHHHHHHhh-hcCCCCCCCCCCCCCccccCCCCCCCCCChHHHHHHHHHHHHHH
Q 018954 234 EAMTVSRKAEKLQEEVESMQGEMSS-FMQIFEGLI-KNDSTVNADDDYDIKPYYSDYLSDIDDLDDVEMQRMEEAREAYI 311 (348)
Q Consensus 234 Ea~tsn~Kve~LQ~dl~sm~~EIss-lm~~fe~it-~N~S~~~~ded~d~~~~~~e~l~~~de~~~~e~ekmE~aR~aY~ 311 (348)
=.....++++-|+..++...-|++- |....+.|. +-+...-. +.+.-.- .-+++.. +|-.|..|.
T Consensus 108 ~N~e~dke~~~le~~L~~~~~e~~~~lq~~~e~~~kkre~~k~~-----------~~l~~~~-ekK~e~s-Le~eR~k~~ 174 (438)
T COG4487 108 LNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNE-----------ERLKFEN-EKKLEES-LELEREKFE 174 (438)
T ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-----------HHHHHHH-HHHHHhh-HHHHHHHHH
Confidence 3345688899999999999999884 666666554 11111100 0000000 1222222 888999998
Q ss_pred HHHHHH
Q 018954 312 TAVAMA 317 (348)
Q Consensus 312 aAvaaA 317 (348)
+.+-.|
T Consensus 175 ~ql~~~ 180 (438)
T COG4487 175 EQLHEA 180 (438)
T ss_pred HHHHHh
Confidence 888877
No 256
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=55.54 E-value=1e+02 Score=24.67 Aligned_cols=48 Identities=29% Similarity=0.306 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018954 152 IEELVALREQVEDLQRKM----FEKDELLKSLESSKSQVNAVHLKLDELKRL 199 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL----~EKDelLkSae~~~~em~a~~akvDELr~q 199 (348)
.+-+..|+..|++|+.+- .+.++|-...+.++.+-++.+..|+.|-..
T Consensus 17 veti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 17 VETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666666666652 334555555555556666666555555433
No 257
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=55.48 E-value=2.8e+02 Score=31.32 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHH-hhHHHHHHHhHHhh
Q 018954 190 HLKLDELKRLAA-EKDSLIKSTQLQLS 215 (348)
Q Consensus 190 ~akvDELr~qla-eKe~likStq~QLs 215 (348)
..+|+++++++. |=+..|+|+.+..-
T Consensus 603 keki~~~~~Ei~~eie~v~~S~gL~~~ 629 (762)
T PLN03229 603 KEKVEKMKKEIELELAGVLKSMGLEVI 629 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhh
Confidence 448888888776 55777888776655
No 258
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=55.40 E-value=1.3e+02 Score=25.65 Aligned_cols=51 Identities=24% Similarity=0.225 Sum_probs=24.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhh
Q 018954 165 LQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLS 215 (348)
Q Consensus 165 LqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLs 215 (348)
.|.--.+++.++.+.+.+-..--+....|+++|.++.++=.-++.++.+..
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~ 79 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQ 79 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666666666555556666666666666555444444444433
No 259
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=55.38 E-value=93 Score=38.51 Aligned_cols=96 Identities=25% Similarity=0.254 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHH
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSLESS---KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAAL 228 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~---~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaL 228 (348)
..-|..|..|-++|.++.++|---|..|... .....+++++|++|..++...| ++.-|+--++.|. ||
T Consensus 1347 ~~kl~~L~~~W~~Le~~t~~Kg~~L~qA~~q~~~~qs~~D~~~~l~~le~qL~S~D-----~G~DL~Svn~llk-Kq--- 1417 (2473)
T KOG0517|consen 1347 EKKLRELHKQWDELEKTTQEKGRKLFQANRQELLLQSLADAKKKLDELESQLQSDD-----TGKDLTSVNDLLK-KQ--- 1417 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCcCcHHHHHHHH-HH---
Confidence 3456778888899999999998888776554 3566777778888877776655 3333444343332 22
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhhhhH
Q 018954 229 EKSQWEAMTVSRKAEKLQEEVESMQGEM 256 (348)
Q Consensus 229 EKlewEa~tsn~Kve~LQ~dl~sm~~EI 256 (348)
.-||||+-+.-.||+.|+..-..|..+-
T Consensus 1418 q~lEsem~~~~~kv~el~s~~~~ma~~~ 1445 (2473)
T KOG0517|consen 1418 QVLESEMEVRAQKVAELQSQAKAMAEEG 1445 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhccC
Confidence 2378999999999999999888886654
No 260
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=55.35 E-value=1.8e+02 Score=30.47 Aligned_cols=117 Identities=14% Similarity=0.150 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLES--------------------SKSQVNAVHLKLDELKRLAAEKDSLIKS 209 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~--------------------~~~em~a~~akvDELr~qlaeKe~likS 209 (348)
.-++-+.-.+++|+.-+.+|.+=-..|....+ +..++..+.++++.|+..+++..--|..
T Consensus 239 ar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~ 318 (434)
T PRK15178 239 MQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPR 318 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhH
Confidence 34456666777777777777665555443332 2455555555666665544444444444
Q ss_pred HhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHH---HHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 210 TQLQLSDAKIKLADKQAALEKSQWEAMTVSRKA---EKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 210 tq~QLsdaki~LadKqAaLEKlewEa~tsn~Kv---e~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
++.+...-+..++.-++-|---- ..-..|.++ ++|..+..--+....+=+.-||+-.
T Consensus 319 l~~rI~aLe~QIa~er~kl~~~~-g~~~la~~laeYe~L~le~efAe~~y~sAlaaLE~AR 378 (434)
T PRK15178 319 LSAKIKVLEKQIGEQRNRLSNKL-GSQGSSESLSLFEDLRLQSEIAKARWESALQTLQQGK 378 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333322222222211000 000124455 7777777776766776677776633
No 261
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=55.24 E-value=1.9e+02 Score=27.46 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=10.2
Q ss_pred HHHHhhhhhhHHHHHHHHHH
Q 018954 246 QEEVESMQGEMSSFMQIFEG 265 (348)
Q Consensus 246 Q~dl~sm~~EIsslm~~fe~ 265 (348)
-..|..+..+++.++..|..
T Consensus 134 ~~~l~~l~~~v~~l~~~~~~ 153 (256)
T PF14932_consen 134 NNELNQLLGEVSKLASELAH 153 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544
No 262
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=55.11 E-value=63 Score=26.51 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhH
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQL 212 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~ 212 (348)
|+++..+-.+|..||+.+ ..++.....+.+++.|||.+-.+|..=+..+.+.|+
T Consensus 10 r~dIk~vd~KVdaLq~~V-------~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~ 63 (75)
T PF05531_consen 10 RQDIKAVDDKVDALQTQV-------DDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQD 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777776 233333344444555555555444444433444433
No 263
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=55.05 E-value=2.7e+02 Score=29.07 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHH----HHHHhhHHHHHHHhH
Q 018954 183 KSQVNAVHLKLDELK----RLAAEKDSLIKSTQL 212 (348)
Q Consensus 183 ~~em~a~~akvDELr----~qlaeKe~likStq~ 212 (348)
.......++.+.+.+ +-+..||.+|.++..
T Consensus 227 ~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~ 260 (511)
T PF09787_consen 227 KAEGESEEAELQQYKQKAQRILQSKEKLIESLKE 260 (511)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 344444555555555 445667777776666
No 264
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=54.95 E-value=4 Score=43.55 Aligned_cols=49 Identities=31% Similarity=0.455 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLA 200 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~ql 200 (348)
..++..|+++++.+++++.+++..+.++......+.....+|.+|..++
T Consensus 191 ~~e~~~l~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~~i~~Le~el 239 (722)
T PF05557_consen 191 ESELEELKEQLEELQSELQEAEQQLQELQASQASLAEAEQKIKELEAEL 239 (722)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455666666666666666666666666555444444455555444433
No 265
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=54.84 E-value=3.4e+02 Score=30.16 Aligned_cols=12 Identities=25% Similarity=0.385 Sum_probs=7.3
Q ss_pred hhhcCCCccccc
Q 018954 72 DRKASSSFTRRG 83 (348)
Q Consensus 72 drk~~~sftRr~ 83 (348)
|.=.+..|-|+|
T Consensus 132 ~~f~~~v~l~QG 143 (908)
T COG0419 132 DTFTRSVYLPQG 143 (908)
T ss_pred HHHhHHheeccH
Confidence 344456677777
No 266
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=54.64 E-value=73 Score=34.54 Aligned_cols=66 Identities=30% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHH
Q 018954 153 EELVALREQVEDLQRKMF----EKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAK 218 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~----EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdak 218 (348)
||+.+|..||-+||+|+. ||+++-.-+--.+..=-.+.+.+.||.-+.||=..-..-++.+|.+++
T Consensus 233 Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 233 EENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 267
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=54.60 E-value=4.3e+02 Score=31.23 Aligned_cols=118 Identities=17% Similarity=0.216 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEK----DELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQ 225 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EK----DelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKq 225 (348)
..+.|+..|++.++++.+.+.+- |-++--+....++.+++....+.|++++.-.---..-.|..|+-..-+|.+-.
T Consensus 675 ~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~ 754 (1200)
T KOG0964|consen 675 ESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIK 754 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHH
Confidence 44556666666666655555443 22333334445677777788888888877666666666666666666666666
Q ss_pred HHHHHHHHHHHH---------hhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 226 AALEKSQWEAMT---------VSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 226 AaLEKlewEa~t---------sn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
..|.+++--.-+ .++=--+-++.|+++-.||..+...|..|+
T Consensus 755 ~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~ 805 (1200)
T KOG0964|consen 755 TSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALR 805 (1200)
T ss_pred HHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 666655422100 000001113445566666666666665443
No 268
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=54.59 E-value=98 Score=23.86 Aligned_cols=22 Identities=9% Similarity=0.206 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDS 205 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~ 205 (348)
.++...+.-++-|...+..-..
T Consensus 45 ~~~~~~~~~~~~l~~~i~~~~~ 66 (123)
T PF02050_consen 45 AQLRNYQRYISALEQAIQQQQQ 66 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433333333
No 269
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=54.09 E-value=1e+02 Score=23.81 Aligned_cols=50 Identities=8% Similarity=0.169 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHH
Q 018954 183 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQ 232 (348)
Q Consensus 183 ~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKle 232 (348)
..-+..+...|+.++.++..-+.-+...+..|..|.+..--..-..++-.
T Consensus 51 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~ 100 (123)
T PF02050_consen 51 QRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKERRR 100 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555554444444444444333
No 270
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.80 E-value=2.2e+02 Score=33.44 Aligned_cols=20 Identities=20% Similarity=0.208 Sum_probs=8.4
Q ss_pred HHHhhhhcCCCcccccceeeec
Q 018954 68 QSLIDRKASSSFTRRGSMIYTK 89 (348)
Q Consensus 68 eSlmdrk~~~sftRr~SmiYT~ 89 (348)
-+.|=++-+.+=. |.+++-|
T Consensus 561 ATkIl~~~n~m~~--GrVTF~P 580 (1200)
T KOG0964|consen 561 ATKILRKLNKMKG--GRVTFMP 580 (1200)
T ss_pred HHHHHHHHHhccC--CeeEEee
Confidence 3444444443322 4455544
No 271
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=53.57 E-value=2.5e+02 Score=28.27 Aligned_cols=53 Identities=26% Similarity=0.394 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018954 150 KEIEELVALREQVEDLQRKMFEK----DELLKSLESSKSQVNAVHLKLDELKRLAAE 202 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EK----DelLkSae~~~~em~a~~akvDELr~qlae 202 (348)
...+++..|..+|.+|+.+..+= .++-..+..-.++|..++.+.|++|...-+
T Consensus 155 e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade 211 (294)
T COG1340 155 EENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADE 211 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777766542 122222333357777777777777766544
No 272
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=53.42 E-value=1.1e+02 Score=24.27 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=37.0
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhhhcC
Q 018954 214 LSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKND 270 (348)
Q Consensus 214 Lsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it~N~ 270 (348)
+.+....+...+.-+..+.-|+-.--++++.+.+|+...-..++.+..-+..+.++.
T Consensus 28 l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v 84 (90)
T PF06103_consen 28 LDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESV 84 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333334444444455666667777777788888888777777777777777666543
No 273
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=53.27 E-value=1.5e+02 Score=25.53 Aligned_cols=68 Identities=28% Similarity=0.354 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH-----------HHHHHHHhhhHHHHHHHHH
Q 018954 182 SKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEK-----------SQWEAMTVSRKAEKLQEEV 249 (348)
Q Consensus 182 ~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEK-----------lewEa~tsn~Kve~LQ~dl 249 (348)
+...+..+..+++++.++++--+.-...++.++..+...+..-...+.| .+-|+...+.=+++|++.|
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555555555554444443333333 3455566665566666544
No 274
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=52.95 E-value=4e+02 Score=30.48 Aligned_cols=107 Identities=20% Similarity=0.251 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHhHHhhHHHHh----
Q 018954 149 EKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLD----ELKRLAAEKDSLIKSTQLQLSDAKIK---- 220 (348)
Q Consensus 149 ~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvD----ELr~qlaeKe~likStq~QLsdaki~---- 220 (348)
+|.-+-+-.|++..+-|++-|.-|++.=|...-.+..|++--...+ ++|-..+++++-..+.|--+.+|+-.
T Consensus 491 ~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~ 570 (961)
T KOG4673|consen 491 EKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKE 570 (961)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 3445566777888888888888888887776666544443322222 23334444444444444444444432
Q ss_pred ------------------hhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018954 221 ------------------LADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 265 (348)
Q Consensus 221 ------------------LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~ 265 (348)
+.|...+|-+.|--+.-+. +-|+.||..||.-++.
T Consensus 571 nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrE----------d~~R~Ei~~LqrRlqa 623 (961)
T KOG4673|consen 571 NRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARRE----------DMFRGEIEDLQRRLQA 623 (961)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 2333344443333332221 3577888888887765
No 275
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=52.88 E-value=1.1e+02 Score=31.10 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLES 181 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~ 181 (348)
.-++++..|+++++.++.++.+=+..|..+..
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33455666666666666655554444444443
No 276
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=52.78 E-value=3.2e+02 Score=32.61 Aligned_cols=21 Identities=24% Similarity=0.242 Sum_probs=9.9
Q ss_pred HHhHHhhHHHHhhhhHHHHHH
Q 018954 209 STQLQLSDAKIKLADKQAALE 229 (348)
Q Consensus 209 Stq~QLsdaki~LadKqAaLE 229 (348)
.++++.+..+|++--+..+++
T Consensus 660 ~~~~ek~~~e~~~e~~lk~~q 680 (1317)
T KOG0612|consen 660 ISDSEKEALEIKLERKLKMLQ 680 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555554444443
No 277
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=52.45 E-value=4.1e+02 Score=31.25 Aligned_cols=94 Identities=26% Similarity=0.350 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhHH-----------HHHHHhHHhhHHHHhhhhHHHH----HH
Q 018954 172 KDELLKSLESSKSQVNAVHLKLDELK-------RLAAEKDS-----------LIKSTQLQLSDAKIKLADKQAA----LE 229 (348)
Q Consensus 172 KDelLkSae~~~~em~a~~akvDELr-------~qlaeKe~-----------likStq~QLsdaki~LadKqAa----LE 229 (348)
|+=+=+-|+++..++.++..++|||- .+..+|-+ .|.--+.-|.||=|.|-|.-|. ..
T Consensus 320 KEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~q 399 (1243)
T KOG0971|consen 320 KEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQ 399 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 44444455555677888888888864 44445422 2233345577777887776543 23
Q ss_pred HHHHHHHHhh-------hHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018954 230 KSQWEAMTVS-------RKAEKLQEEVESMQGEMSSFMQIFEG 265 (348)
Q Consensus 230 KlewEa~tsn-------~Kve~LQ~dl~sm~~EIsslm~~fe~ 265 (348)
|+.-|+=+.+ .-.|.|+..++.|+.-|.-|..++++
T Consensus 400 K~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDA 442 (1243)
T KOG0971|consen 400 KLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDA 442 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443 44577889999999999999999966
No 278
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=52.44 E-value=62 Score=32.52 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=44.6
Q ss_pred HHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHH
Q 018954 204 DSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 264 (348)
Q Consensus 204 e~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe 264 (348)
+.++.+++.++...+..+++..+.|++.. +..+|..+++..+.+.+-+|.-+..+..
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIA 297 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777777777777777776 7778888999999999999998887754
No 279
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=51.43 E-value=1.8e+02 Score=26.07 Aligned_cols=104 Identities=20% Similarity=0.221 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhh
Q 018954 161 QVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSR 240 (348)
Q Consensus 161 QVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~ 240 (348)
..+.|++-=.+||.+=.-++++..++-.++.....+-.+.--.-.-|.+++.+++..-..|.+...-|.-+--|-..=.+
T Consensus 8 v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k 87 (140)
T PF10473_consen 8 VEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDK 87 (140)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777887777777777777777777777777777777777777777777666666666666666555555566
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHH
Q 018954 241 KAEKLQEEVESMQGEMSSFMQIFE 264 (348)
Q Consensus 241 Kve~LQ~dl~sm~~EIsslm~~fe 264 (348)
...++|+.|+.++.-.++|..+++
T Consensus 88 ~lq~~q~kv~eLE~~~~~~~~~l~ 111 (140)
T PF10473_consen 88 ELQKKQEKVSELESLNSSLENLLQ 111 (140)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 666666666666666666665554
No 280
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=51.41 E-value=2.3e+02 Score=27.24 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HhHHhhHHHHhhhhHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKS---TQLQLSDAKIKLADKQAALEK 230 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likS---tq~QLsdaki~LadKqAaLEK 230 (348)
++...+.+++.++..+..... .++....++..+++.++..++++..-..|.+. ++.++.+++..+...++.++.
T Consensus 94 ~l~~a~a~l~~~~~~~~~~~~---~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~ 170 (346)
T PRK10476 94 DLALADAQIMTTQRSVDAERS---NAASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQ 170 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555544433222 23345567777888888888888777777763 567888888888888777777
Q ss_pred HHHHHH
Q 018954 231 SQWEAM 236 (348)
Q Consensus 231 lewEa~ 236 (348)
++-+..
T Consensus 171 a~~~~~ 176 (346)
T PRK10476 171 ALLQAQ 176 (346)
T ss_pred HHHHHH
Confidence 665444
No 281
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=51.36 E-value=3.6e+02 Score=29.45 Aligned_cols=69 Identities=30% Similarity=0.344 Sum_probs=49.2
Q ss_pred cccchhhhhhhhhHHHHHHHHHHHHHHHH---HHhhh----HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhHHHH
Q 018954 139 SIFSSRALVSEKEIEELVALREQVEDLQR---KMFEK----DELLKSLESSK----SQVNAVHLKLDELKRLAAEKDSLI 207 (348)
Q Consensus 139 s~~~s~~~~~~kd~eEl~~LreQVeeLqk---KL~EK----DelLkSae~~~----~em~a~~akvDELr~qlaeKe~li 207 (348)
-+.+||.+..++ .|.+|+.+||. +|... -+.|.+....+ ..++.+..+++.++..|..|+.=+
T Consensus 152 k~t~SRAlsQN~------eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~ 225 (617)
T PF15070_consen 152 KATASRALSQNR------ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEA 225 (617)
T ss_pred chHHHHHHHhHH------HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 346778777775 58888899888 55533 35555555544 455678888999999999998877
Q ss_pred HHHhHH
Q 018954 208 KSTQLQ 213 (348)
Q Consensus 208 kStq~Q 213 (348)
++++.|
T Consensus 226 ~~Lq~q 231 (617)
T PF15070_consen 226 QSLQEQ 231 (617)
T ss_pred HHHHHH
Confidence 777654
No 282
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=51.33 E-value=2.3e+02 Score=27.23 Aligned_cols=18 Identities=0% Similarity=0.099 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 018954 154 ELVALREQVEDLQRKMFE 171 (348)
Q Consensus 154 El~~LreQVeeLqkKL~E 171 (348)
++..++.++...+.++..
T Consensus 87 ~l~~a~a~l~~a~a~l~~ 104 (346)
T PRK10476 87 TVAQAQADLALADAQIMT 104 (346)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555555443
No 283
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=51.02 E-value=2.7e+02 Score=27.93 Aligned_cols=106 Identities=17% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhH-------
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADK------- 224 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadK------- 224 (348)
|++-..+=.-|+++.-||.+ =|..++...+..+...|++.++.+.+=+.-|.+++.++..-+..++++
T Consensus 47 r~~A~~fA~~ld~~~~kl~~-----Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~ 121 (301)
T PF06120_consen 47 RQEAIEFADSLDELKEKLKE-----MSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGY 121 (301)
T ss_pred HHHHHHHHHhhHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchH
Q ss_pred -----------HHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHH
Q 018954 225 -----------QAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQI 262 (348)
Q Consensus 225 -----------qAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~ 262 (348)
...+.++..++-.--.|++.+++.+..++.-|..++..
T Consensus 122 ~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~ 170 (301)
T PF06120_consen 122 IINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTEQ 170 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 284
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=50.93 E-value=4.3e+02 Score=31.70 Aligned_cols=107 Identities=21% Similarity=0.197 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---------HHHHHHhHHhhHHHHh
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKD---------SLIKSTQLQLSDAKIK 220 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe---------~likStq~QLsdaki~ 220 (348)
+.+++.-.|.++|...++++.|.+--++-++....++..+..+...+..++..=. +.+. .+-.+++...+
T Consensus 234 ~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~-l~~~~~n~~~~ 312 (1294)
T KOG0962|consen 234 KSKEEVSELENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEE-LGELLSNFEER 312 (1294)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHH-HHHHHHhHHHH
Confidence 4445555555555555555555555555555555555555555544444443211 1111 22345566666
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 018954 221 LADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 257 (348)
Q Consensus 221 LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIs 257 (348)
+.+++-.+..+|.+...-+.--..|...-.....+++
T Consensus 313 ~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~~~~~ 349 (1294)
T KOG0962|consen 313 LEEMGEKLRELEREISDLNEERSSLIQLKTELDLEQS 349 (1294)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655555444444444444444444
No 285
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=50.91 E-value=83 Score=28.82 Aligned_cols=16 Identities=50% Similarity=0.565 Sum_probs=6.4
Q ss_pred hhHHHHhhhhHHHHHH
Q 018954 214 LSDAKIKLADKQAALE 229 (348)
Q Consensus 214 Lsdaki~LadKqAaLE 229 (348)
+..++..+...++.++
T Consensus 104 ~~~~~~~~~~~~~~l~ 119 (322)
T TIGR01730 104 LDDAKAAVEAAQADLE 119 (322)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 286
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=50.78 E-value=5.1 Score=42.77 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKST 210 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likSt 210 (348)
.++.+++..++++++.+.+++..|.+.
T Consensus 192 ~e~~~l~~~le~~~~~~~e~e~~~~~L 218 (722)
T PF05557_consen 192 SELEELKEQLEELQSELQEAEQQLQEL 218 (722)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555444443
No 287
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=50.47 E-value=2.7e+02 Score=30.64 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHH
Q 018954 171 EKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAK 218 (348)
Q Consensus 171 EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdak 218 (348)
+|++|-+.++.+.++|..+...|+.+.++++..|.=++-+-.++++.+
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~ 127 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSR 127 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555566666666666666666666666655555555555443
No 288
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=50.42 E-value=2.2e+02 Score=26.64 Aligned_cols=13 Identities=8% Similarity=0.041 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 018954 154 ELVALREQVEDLQ 166 (348)
Q Consensus 154 El~~LreQVeeLq 166 (348)
.+.....|.....
T Consensus 25 ~~~~~~~~~~~~~ 37 (251)
T PF11932_consen 25 QAQQVQQQWVQAA 37 (251)
T ss_pred HHHHHHHHHHHHH
Confidence 3334443333333
No 289
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=50.18 E-value=1.6e+02 Score=25.01 Aligned_cols=45 Identities=29% Similarity=0.422 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018954 153 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELK 197 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr 197 (348)
.+|..|+++..-|+..+.-=..-+..++....++..+...|+.|.
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~ 50 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELK 50 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445555555555544433222223333444444444444444443
No 290
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=50.11 E-value=4.2e+02 Score=29.84 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESS 182 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~ 182 (348)
++..-..|+.+.++++.+++..|.+....
T Consensus 194 e~~~~~~ql~~~~q~~~~~~~~l~e~~~~ 222 (716)
T KOG4593|consen 194 ELDRQHKQLQEENQKIQELQASLEERADH 222 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666665544
No 291
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=48.86 E-value=2.3e+02 Score=26.57 Aligned_cols=77 Identities=25% Similarity=0.240 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HhHHhhHHHHhhhhHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKS---TQLQLSDAKIKLADKQAALEK 230 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likS---tq~QLsdaki~LadKqAaLEK 230 (348)
.+..++.|+..++..+. .+...+.....++..+++.++..+.++..-..|.+. .+.++.+++..+..-++.|+.
T Consensus 88 ~l~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a~~~~~~a~~~l~~ 164 (334)
T TIGR00998 88 NLAALVRQTKQLEITVQ---QLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELDHARKALLSAKAALNA 164 (334)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443322 222233444455666666666666666666666543 455666777776666666665
Q ss_pred HHH
Q 018954 231 SQW 233 (348)
Q Consensus 231 lew 233 (348)
++-
T Consensus 165 ~~~ 167 (334)
T TIGR00998 165 AIQ 167 (334)
T ss_pred HHH
Confidence 544
No 292
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=48.85 E-value=5.7 Score=41.90 Aligned_cols=86 Identities=20% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHH--HHHHHHHHhhhHHHHHHHHHhhhhhhHHHH
Q 018954 182 SKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALE--KSQWEAMTVSRKAEKLQEEVESMQGEMSSF 259 (348)
Q Consensus 182 ~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLE--KlewEa~tsn~Kve~LQ~dl~sm~~EIssl 259 (348)
+......|...+++|+.+..++-.-|+.++.|+..-.-.|++.-..+. .+.-.-..|..+++.|+..+..++.|.+.=
T Consensus 82 L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R 161 (619)
T PF03999_consen 82 LKEQLPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERR 161 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 457777899999999999999999999999999887777776655442 123333446789999999999999998866
Q ss_pred HHHHHHhh
Q 018954 260 MQIFEGLI 267 (348)
Q Consensus 260 m~~fe~it 267 (348)
+..|..+.
T Consensus 162 ~~~v~~l~ 169 (619)
T PF03999_consen 162 LEEVRELR 169 (619)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 66665544
No 293
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=48.85 E-value=2.7e+02 Score=27.69 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 223 DKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 223 dKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
++-+..+.+.-+...-.++..+..+++..++-+|+.|+.+..+|.
T Consensus 206 e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~~~sv~~all 250 (264)
T PF07246_consen 206 ELEARESGLRNESKWLEHELSDAKEDMIRLRNDISDFTSVPQALL 250 (264)
T ss_pred HHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence 333334444445555567788888888888888888766655543
No 294
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=48.73 E-value=2.3e+02 Score=26.47 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAA 227 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAa 227 (348)
.+|.+.+.-|+|....|..=+.=+.+.......++..+.-.+.+
T Consensus 74 ~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~ 117 (188)
T PF05335_consen 74 QEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAA 117 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333333333333333333333333
No 295
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=48.42 E-value=3.5e+02 Score=28.50 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhHHHHHHHhHHhhHHH----HhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHH
Q 018954 193 LDELKRLAAEKDSLIKSTQLQLSDAK----IKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFM 260 (348)
Q Consensus 193 vDELr~qlaeKe~likStq~QLsdak----i~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm 260 (348)
|-.++..++-.-.=+.++..+..+.+ +.+.+++-.+.+|+-++-.-.+|.++|+-.=+++..+|+++.
T Consensus 173 l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 173 LAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33344444444444444444444443 445677778888999999999999999999999999999887
No 296
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=48.19 E-value=1.8e+02 Score=29.58 Aligned_cols=82 Identities=15% Similarity=0.177 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHH-HhhhHHHHHHHHHhhhhh
Q 018954 176 LKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAM-TVSRKAEKLQEEVESMQG 254 (348)
Q Consensus 176 LkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~-tsn~Kve~LQ~dl~sm~~ 254 (348)
++..+.+..+-..++++-...++.+.+=..+...-.+.++-.+..|-+..+.|.+++-.+. .....+++|++++...+.
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~ 82 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRC 82 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555555555555555556666667777777777777754321 234455555555554444
Q ss_pred hHH
Q 018954 255 EMS 257 (348)
Q Consensus 255 EIs 257 (348)
-+.
T Consensus 83 ~l~ 85 (330)
T PF07851_consen 83 QLF 85 (330)
T ss_pred hHH
Confidence 333
No 297
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=47.87 E-value=1.9e+02 Score=25.22 Aligned_cols=85 Identities=21% Similarity=0.245 Sum_probs=41.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHH-----
Q 018954 162 VEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAM----- 236 (348)
Q Consensus 162 VeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~----- 236 (348)
|+-|+..|.-+|.=+-+ +..++..+.++=|+++.++..=-.. ..++......+...+.-++.|+-.--
T Consensus 18 ve~L~s~lr~~E~E~~~---l~~el~~l~~~r~~l~~Eiv~l~~~----~e~~~~~~~~~~~L~~el~~l~~ry~t~Lel 90 (120)
T PF12325_consen 18 VERLQSQLRRLEGELAS---LQEELARLEAERDELREEIVKLMEE----NEELRALKKEVEELEQELEELQQRYQTLLEL 90 (120)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666554433 4556666666667777666542211 12222333333333333333322211
Q ss_pred --HhhhHHHHHHHHHhhhh
Q 018954 237 --TVSRKAEKLQEEVESMQ 253 (348)
Q Consensus 237 --tsn~Kve~LQ~dl~sm~ 253 (348)
.++-.|++|+.||..|.
T Consensus 91 lGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 91 LGEKSEEVEELRADVQDLK 109 (120)
T ss_pred hcchHHHHHHHHHHHHHHH
Confidence 23456677777766654
No 298
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=47.75 E-value=3e+02 Score=27.44 Aligned_cols=15 Identities=40% Similarity=0.350 Sum_probs=7.3
Q ss_pred HHhhhHHHHHHHHHH
Q 018954 168 KMFEKDELLKSLESS 182 (348)
Q Consensus 168 KL~EKDelLkSae~~ 182 (348)
+|.+.+..|.-+++.
T Consensus 150 dl~e~~~~l~DLesa 164 (269)
T PF05278_consen 150 DLKEMIATLKDLESA 164 (269)
T ss_pred HHHHHHHHHHHHHHc
Confidence 444455555555444
No 299
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=47.63 E-value=39 Score=32.22 Aligned_cols=11 Identities=36% Similarity=0.564 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 018954 306 AREAYITAVAM 316 (348)
Q Consensus 306 aR~aY~aAvaa 316 (348)
+...|-+|+..
T Consensus 142 e~~~Y~~A~~l 152 (263)
T PRK10803 142 ANTDYNAAIAL 152 (263)
T ss_pred HHHHHHHHHHH
Confidence 34556666554
No 300
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=47.58 E-value=3.5e+02 Score=28.24 Aligned_cols=118 Identities=22% Similarity=0.236 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHH-------HHHHHHHHhhHHHHHHHhHHhhHHHHhh
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKS-LESSKSQVNAVHLKL-------DELKRLAAEKDSLIKSTQLQLSDAKIKL 221 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkS-ae~~~~em~a~~akv-------DELr~qlaeKe~likStq~QLsdaki~L 221 (348)
--++|+..|+.||+.|.-.+.+.+.-+.. .+++......+...+ +|++....+-..+-.....+-+....++
T Consensus 285 ~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~~s~~~~k~ 364 (511)
T PF09787_consen 285 HLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYREELSRQKSPLQLKL 364 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 45677777777777777666666655544 444444444444333 4444445555556666666666777777
Q ss_pred hhHHHHHHHHHHHHHHhh----------------hHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 222 ADKQAALEKSQWEAMTVS----------------RKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 222 adKqAaLEKlewEa~tsn----------------~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
.+|..-+.+|--.++..- ...-.=|..|..+..|=.+|.-+|+++.
T Consensus 365 ~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~ 426 (511)
T PF09787_consen 365 KEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLE 426 (511)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHH
Confidence 777777777766554433 1122224455566666666666676654
No 301
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=47.53 E-value=19 Score=23.69 Aligned_cols=18 Identities=39% Similarity=0.708 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 018954 154 ELVALREQVEDLQRKMFE 171 (348)
Q Consensus 154 El~~LreQVeeLqkKL~E 171 (348)
|+-.|+..|.+|.++|.+
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 667777888888777754
No 302
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=47.43 E-value=92 Score=29.07 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=37.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhh
Q 018954 148 SEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLS 215 (348)
Q Consensus 148 ~~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLs 215 (348)
.++--++..-+..+++-|+...-.=-++|+.+. .+.+|-+++.+|.+++.++-.-+.-++++..+..
T Consensus 127 ~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~-~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 127 SEDVTEQYVDLEARLKNLEAEEERLLELLEKAK-TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444555555555555554444445555444 5566666666666666666555555555554433
No 303
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=46.85 E-value=2.5e+02 Score=33.06 Aligned_cols=73 Identities=21% Similarity=0.330 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHH
Q 018954 158 LREQVEDLQRKMFEKDELLKSLESSK----SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQW 233 (348)
Q Consensus 158 LreQVeeLqkKL~EKDelLkSae~~~----~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlew 233 (348)
|.+||.+|++ ..+ -+.++++.+ .++.-..-.+..+++.+...+--++.+++++-+-+=.+-+-+--|...|.
T Consensus 664 l~eel~ei~~--~~~--e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~ 739 (1141)
T KOG0018|consen 664 LLEELKEIQK--RRK--EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREG 739 (1141)
T ss_pred HHHHHHHHHH--hhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 4556666666 333 455555543 44444445555666666666666666666665433333333333333333
Q ss_pred H
Q 018954 234 E 234 (348)
Q Consensus 234 E 234 (348)
+
T Consensus 740 ~ 740 (1141)
T KOG0018|consen 740 E 740 (1141)
T ss_pred H
Confidence 3
No 304
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=46.65 E-value=1.2e+02 Score=28.94 Aligned_cols=71 Identities=25% Similarity=0.303 Sum_probs=42.6
Q ss_pred ccccchhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 018954 138 FSIFSSRALVSEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQ 211 (348)
Q Consensus 138 ~s~~~s~~~~~~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq 211 (348)
|-++++-.++ +=..++++|.++|-.||+...-=|.=++++.+.- -+-.++.++.+|+++++.=.-=|++..
T Consensus 73 F~~~~~eel~--~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L-t~eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 73 FDMVSDEELQ--VLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL-TTEEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred hcCCChHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445443332 2234778888888888877766666666655431 123456777788888777555555543
No 305
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=46.55 E-value=2.4e+02 Score=26.91 Aligned_cols=81 Identities=15% Similarity=0.166 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH---HhHHhhHHHHhhhhHHHHHHHHHHHHHHh-----hhHHHHHHHHHhhhhh
Q 018954 183 KSQVNAVHLKLDELKRLAAEKDSLIKS---TQLQLSDAKIKLADKQAALEKSQWEAMTV-----SRKAEKLQEEVESMQG 254 (348)
Q Consensus 183 ~~em~a~~akvDELr~qlaeKe~likS---tq~QLsdaki~LadKqAaLEKlewEa~ts-----n~Kve~LQ~dl~sm~~ 254 (348)
..++..+++.++-.++.+.....|.+. .+.++.+++..+...++.++.++-.+..- ......++.++...+.
T Consensus 113 ~~~l~~ak~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 192 (331)
T PRK03598 113 RAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLSQYREGNRPQDIAQAKASLAQAQA 192 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 344444455555555444444444432 45677777777777777777666554432 1223334444444444
Q ss_pred hHHHHHHHH
Q 018954 255 EMSSFMQIF 263 (348)
Q Consensus 255 EIsslm~~f 263 (348)
++......+
T Consensus 193 ~l~~a~~~l 201 (331)
T PRK03598 193 ALAQAELNL 201 (331)
T ss_pred HHHHHHHHH
Confidence 444444444
No 306
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=46.32 E-value=4.2e+02 Score=28.74 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHH----H---HhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 018954 182 SKSQVNAVHLKLDELKRL----A---AEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEE 248 (348)
Q Consensus 182 ~~~em~a~~akvDELr~q----l---aeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~d 248 (348)
++.=||.|..+|+||--. + .+=+..++.+|--|.+.+.-|.+..+.-|-||-|+++...-.-.||+.
T Consensus 360 fvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEr 433 (527)
T PF15066_consen 360 FVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQER 433 (527)
T ss_pred HHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHH
Confidence 356677777777776421 1 223455667777777777778877777777777777666555556654
No 307
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.24 E-value=5.3e+02 Score=29.95 Aligned_cols=15 Identities=33% Similarity=0.213 Sum_probs=6.1
Q ss_pred HHHHHHHhhhHHHHH
Q 018954 231 SQWEAMTVSRKAEKL 245 (348)
Q Consensus 231 lewEa~tsn~Kve~L 245 (348)
|+-|+.+-|-|.-.|
T Consensus 442 l~~eletLn~k~qql 456 (1118)
T KOG1029|consen 442 LQQELETLNFKLQQL 456 (1118)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 308
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=46.20 E-value=1.5e+02 Score=29.18 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=42.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhh
Q 018954 169 MFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLAD 223 (348)
Q Consensus 169 L~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~Lad 223 (348)
|--||+-.+++=-+.-+-...+..++-|+..|..+|+-|+-+|-+|.+|.+.|+-
T Consensus 52 l~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtt 106 (272)
T KOG4552|consen 52 LDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTT 106 (272)
T ss_pred HHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555556666677888999999999999999999999999988863
No 309
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=45.98 E-value=2.7e+02 Score=26.52 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=8.8
Q ss_pred HHHhHHhhHHHHhhhhHHHHH
Q 018954 208 KSTQLQLSDAKIKLADKQAAL 228 (348)
Q Consensus 208 kStq~QLsdaki~LadKqAaL 228 (348)
..+|.|++.-.--+..+.|.|
T Consensus 133 ~~Lq~Ql~~~e~l~~~~da~l 153 (193)
T PF14662_consen 133 ATLQRQLCEFESLICQRDAIL 153 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 310
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=45.73 E-value=3.2e+02 Score=27.20 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=10.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHHH
Q 018954 242 AEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 242 ve~LQ~dl~sm~~EIsslm~~f 263 (348)
+..++.++...+.++......+
T Consensus 229 ~~~~~~~l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 229 LETVEARIKEARYEIEELENKL 250 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 311
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=45.63 E-value=5e+02 Score=29.45 Aligned_cols=107 Identities=20% Similarity=0.225 Sum_probs=57.5
Q ss_pred hhHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHhhHHH
Q 018954 150 KEIEELVALRE-QVEDLQRKMFEKDELLKSLESSKSQV----------------------NAVHLKLDELKRLAAEKDSL 206 (348)
Q Consensus 150 kd~eEl~~Lre-QVeeLqkKL~EKDelLkSae~~~~em----------------------~a~~akvDELr~qlaeKe~l 206 (348)
-.|||..+|=. ..+..++=...=++|=-.|+....+| +.-..+|-.|.-++.+||-=
T Consensus 176 ~EREET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~ 255 (786)
T PF05483_consen 176 YEREETRQLYMDLNENIEKMIAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENK 255 (786)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhH
Confidence 46778776643 33444554555555555555555444 44444444455555555555
Q ss_pred HHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhH
Q 018954 207 IKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEM 256 (348)
Q Consensus 207 ikStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EI 256 (348)
|+-+...|.+.+-..+..|..-....-=++.|+.+.+-|..+|......+
T Consensus 256 ~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~~~K~sl 305 (786)
T PF05483_consen 256 IKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELEDIKQSL 305 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 55555555555555444444433333335667777777777776544433
No 312
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=45.60 E-value=2.6e+02 Score=26.18 Aligned_cols=86 Identities=19% Similarity=0.341 Sum_probs=52.5
Q ss_pred hhhHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHhHHhhHHHHh
Q 018954 149 EKEIEELVA-LREQVEDLQRKMFEKDELLKSLESSKSQVNAVHL-------KLDELKRLAAEKDSLIKSTQLQLSDAKIK 220 (348)
Q Consensus 149 ~kd~eEl~~-LreQVeeLqkKL~EKDelLkSae~~~~em~a~~a-------kvDELr~qlaeKe~likStq~QLsdaki~ 220 (348)
...|++++. --.++.+|+..|++++..+..+..-...|..+.. +|..|+.++ +..-.-+...+++++.+
T Consensus 35 ~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~---~~~~~e~~~~l~~~~~q 111 (206)
T PF14988_consen 35 QRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEEL---EKMRAEHAEKLQEAESQ 111 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 356666655 4567999999999999988877766544444432 233333322 23333355566777777
Q ss_pred hhhHHHHHHH-H-HHHHHH
Q 018954 221 LADKQAALEK-S-QWEAMT 237 (348)
Q Consensus 221 LadKqAaLEK-l-ewEa~t 237 (348)
+-.-.+.||+ + +..+..
T Consensus 112 fl~EK~~LEke~~e~~i~~ 130 (206)
T PF14988_consen 112 FLQEKARLEKEASELKILQ 130 (206)
T ss_pred HHHHHHHHHHHHHHhhHHH
Confidence 7777777765 4 444443
No 313
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.45 E-value=4.7e+02 Score=29.03 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQ 211 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq 211 (348)
-.+.|.-.|.|.|+-||..|.||++-|.. +++.|+.|.+.+.-+.+.|...|-++.+-.
T Consensus 335 ~~~ke~kdLkEkv~~lq~~l~eke~sl~d---lkehassLas~glk~ds~Lk~leIalEqkk 393 (654)
T KOG4809|consen 335 SFRKENKDLKEKVNALQAELTEKESSLID---LKEHASSLASAGLKRDSKLKSLEIALEQKK 393 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 34567788999999999999999987665 578899999999888888888888877643
No 314
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=45.42 E-value=2.6e+02 Score=26.02 Aligned_cols=13 Identities=46% Similarity=0.608 Sum_probs=4.9
Q ss_pred HHHHHHHhhhhhh
Q 018954 243 EKLQEEVESMQGE 255 (348)
Q Consensus 243 e~LQ~dl~sm~~E 255 (348)
+.+.+++.+++.+
T Consensus 169 ~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 169 EALKEEIENAELE 181 (190)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 315
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=45.32 E-value=3.7e+02 Score=30.38 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHH----------HHhhHHHHHHHhHHhh
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSL----ESSKSQVNAVHLKLDELKRL----------AAEKDSLIKSTQLQLS 215 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSa----e~~~~em~a~~akvDELr~q----------laeKe~likStq~QLs 215 (348)
.+.|-|.-|.-=|++-+.||--++|+|..- -++..+--.|-+.|-+||-. ..+|-++-+-.=.++.
T Consensus 136 aQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn 215 (861)
T KOG1899|consen 136 AQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVN 215 (861)
T ss_pred HhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence 455566677777788888888888887632 22233333333333333322 2333333333333333
Q ss_pred HHHHhhhhHHHHHHHHHHHHHH--hhhHHHHHHHHHhhhhhhHHHH-HHHHHHhh
Q 018954 216 DAKIKLADKQAALEKSQWEAMT--VSRKAEKLQEEVESMQGEMSSF-MQIFEGLI 267 (348)
Q Consensus 216 daki~LadKqAaLEKlewEa~t--sn~Kve~LQ~dl~sm~~EIssl-m~~fe~it 267 (348)
++|..++-. |++|.|-+- +..-+..|++.++....||-.+ ..+++.+.
T Consensus 216 --~~kv~e~~~--erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~ 266 (861)
T KOG1899|consen 216 --QSKVGEVVQ--ERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLM 266 (861)
T ss_pred --HHHHHHHHH--HHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 444444433 445555444 4444678999999999998754 44456555
No 316
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=45.25 E-value=1.7e+02 Score=24.57 Aligned_cols=60 Identities=23% Similarity=0.375 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSLESS--KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQL 214 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~--~~em~a~~akvDELr~qlaeKe~likStq~QL 214 (348)
++++..|.+.+....+.|..=|.- ++++ ..++..++-.|.+++..+..=+.-|+++..++
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~---l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETK---LEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 455666655555554444332221 2222 46777777777777777776666666665553
No 317
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=44.68 E-value=1.8e+02 Score=24.09 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 018954 156 VALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLI 207 (348)
Q Consensus 156 ~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~li 207 (348)
..|+++++.|+..+. .+.....++..+...|+.|... ..++.+|
T Consensus 9 ~ql~~~i~~l~~~i~-------~l~~~i~e~~~~~~~L~~l~~~-~~~~~lv 52 (126)
T TIGR00293 9 QILQQQVESLQAQIA-------ALRALIAELETAIETLEDLKGA-EGKETLV 52 (126)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcccc-CCCeEEE
Confidence 344444444444443 3444444444444555555443 3455555
No 318
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=44.47 E-value=75 Score=26.47 Aligned_cols=39 Identities=18% Similarity=0.318 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018954 227 ALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 265 (348)
Q Consensus 227 aLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~ 265 (348)
|.+-++.-+..=.+..++|+.++..+..+|..+...++.
T Consensus 88 A~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 88 AIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445566666666666666666555443
No 319
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=44.45 E-value=1.6e+02 Score=29.85 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhH
Q 018954 223 DKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEM 256 (348)
Q Consensus 223 dKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EI 256 (348)
++.+.+.++.-....-..+.++|+.++..++.++
T Consensus 372 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l 405 (451)
T PF03961_consen 372 EKKEQLKKLKEKKKELKEELKELKEELKELKEEL 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333333
No 320
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=44.45 E-value=1.8e+02 Score=33.40 Aligned_cols=98 Identities=16% Similarity=0.190 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhhHH------
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESS------------------KSQVNAVHLKLDELKRLAAEKDS------ 205 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~------------------~~em~a~~akvDELr~qlaeKe~------ 205 (348)
........|.-++.+|.++|.+|+++-+-...- +.++..++...+.|+.++..-.+
T Consensus 464 ~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~ 543 (913)
T KOG0244|consen 464 GHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLG 543 (913)
T ss_pred cchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhh
Confidence 344456668899999999999999998877752 25555666666666666654444
Q ss_pred -----HHHHHhHHhhHHHHhhhhHHHHHHH-----------HHHHHHHhhhHHHHHHH
Q 018954 206 -----LIKSTQLQLSDAKIKLADKQAALEK-----------SQWEAMTVSRKAEKLQE 247 (348)
Q Consensus 206 -----likStq~QLsdaki~LadKqAaLEK-----------lewEa~tsn~Kve~LQ~ 247 (348)
.|+++-.|.++-+..|-+.-..+.. .+|--+..++||+-++.
T Consensus 544 eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~~ 601 (913)
T KOG0244|consen 544 EERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLRV 601 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666554444332 45555666667665553
No 321
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=44.15 E-value=2.5e+02 Score=25.56 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDE 195 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDE 195 (348)
+-+-||..-.++|.-||..+.-=.-+ +-+.++++-++.+++-|
T Consensus 12 ~a~aeL~~a~~~I~~~q~r~a~a~~~---~~~r~seldqA~~~~~e 54 (136)
T PF11570_consen 12 AARAELDQADEDIATLQERQASAEQA---LNGRRSELDQANKKVKE 54 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHH
Confidence 44668888888888888766533322 33444555555555544
No 322
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=44.04 E-value=97 Score=32.88 Aligned_cols=24 Identities=4% Similarity=0.205 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhH
Q 018954 181 SSKSQVNAVHLKLDELKRLAAEKD 204 (348)
Q Consensus 181 ~~~~em~a~~akvDELr~qlaeKe 204 (348)
.+..+|..+.+++.+|..++++-+
T Consensus 567 ~~e~~i~~le~~~~~l~~~l~~~~ 590 (638)
T PRK10636 567 RLEKEMEKLNAQLAQAEEKLGDSE 590 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCch
Confidence 345566666677777777766543
No 323
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=43.85 E-value=5.2e+02 Score=29.16 Aligned_cols=17 Identities=29% Similarity=0.262 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhhhhh
Q 018954 324 ESMATAARARLHLQSFV 340 (348)
Q Consensus 324 Esl~~aAeaR~~LQ~fv 340 (348)
||=..-+..-.+|+++-
T Consensus 744 ECQeTI~sLGkQLksLa 760 (769)
T PF05911_consen 744 ECQETIASLGKQLKSLA 760 (769)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 45555566677777764
No 324
>PF11315 Med30: Mediator complex subunit 30; InterPro: IPR021019 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med30 is a metazoan-specific subunit of Mediator [], having no homologues in yeasts.
Probab=43.71 E-value=1.2e+02 Score=27.69 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=55.7
Q ss_pred HHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhhhcCCCCCCCCCCCCCccccCCCCCCCCC-ChHHHHHHHHHHHHHHHH
Q 018954 236 MTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKNDSTVNADDDYDIKPYYSDYLSDIDDL-DDVEMQRMEEAREAYITA 313 (348)
Q Consensus 236 ~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it~N~S~~~~ded~d~~~~~~e~l~~~de~-~~~e~ekmE~aR~aY~aA 313 (348)
-..+.|..+||+.+.++..=+-.|+.+.++.-+|..+..+.+--+-.||..+.-...++- ...+...+-++|.--+..
T Consensus 41 ~~aqdr~~kl~e~lr~i~~LFkkLRlIYekCne~~~~l~~~~iEsLIP~~~~~~~k~e~~~~s~~~~~~~~er~el~e~ 119 (150)
T PF11315_consen 41 NMAQDRRNKLQEQLRTIKVLFKKLRLIYEKCNENCQGLEPTPIESLIPYKEEPRNKEEERDSSEEYRQLLEERKELIEQ 119 (150)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHhccccCCccccccccccchhhHHHHHHHHHHHHH
Confidence 456788999999999999999999999999998875555432223467777666655542 344666677777765553
No 325
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=43.60 E-value=2.9e+02 Score=32.96 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=20.6
Q ss_pred HhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 018954 210 TQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESM 252 (348)
Q Consensus 210 tq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm 252 (348)
.|.+......+++...+-+.+|+.++...-.-.+.+|...+++
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555444443333334333333
No 326
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=43.55 E-value=11 Score=31.01 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 240 RKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 240 ~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
.++..|..+++.+..+...|...|
T Consensus 107 ~~~~~l~~~~~~lk~~~~~~~~~~ 130 (131)
T PF05103_consen 107 AEAERLREEIEELKRQAEQFRAQF 130 (131)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555554444443
No 327
>PRK14153 heat shock protein GrpE; Provisional
Probab=43.51 E-value=92 Score=29.24 Aligned_cols=56 Identities=20% Similarity=0.149 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHhHHhh
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAA-EKDSLIKSTQLQLS 215 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qla-eKe~likStq~QLs 215 (348)
|.-.|...+..+|+.|+.++.+ ++++..-++|.++-+|+-.. |++.+.++....+-
T Consensus 30 ~~~~~~~~~~~ei~~l~~e~~e----------lkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~ 86 (194)
T PRK14153 30 KEEPEDSTADSETEKCREEIES----------LKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVL 86 (194)
T ss_pred hhhhhcccchHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556666666666665543 34445556666666666554 66666666555444
No 328
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=43.48 E-value=1.7e+02 Score=31.54 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=6.0
Q ss_pred HHHHHHhhhhhh
Q 018954 329 AARARLHLQSFV 340 (348)
Q Consensus 329 aAeaR~~LQ~fv 340 (348)
....+..|..||
T Consensus 544 ~~~~~~~l~~li 555 (656)
T PRK06975 544 SAGVGEQLKQLV 555 (656)
T ss_pred HHHHHHHhhCcE
Confidence 344455555554
No 329
>PRK11546 zraP zinc resistance protein; Provisional
Probab=43.36 E-value=1.2e+02 Score=27.53 Aligned_cols=54 Identities=15% Similarity=0.090 Sum_probs=37.9
Q ss_pred HHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018954 212 LQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 265 (348)
Q Consensus 212 ~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~ 265 (348)
.+-.+-+.+|..|++.|.-|----..-..|+..|..|+..++..+...+..|+.
T Consensus 61 ~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~ 114 (143)
T PRK11546 61 AQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDI 114 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666777777665555556678888888888888888877777755
No 330
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=43.29 E-value=3.5e+02 Score=26.97 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018954 176 LKSLESSKSQVNAVHLKLDELKRLA 200 (348)
Q Consensus 176 LkSae~~~~em~a~~akvDELr~ql 200 (348)
|+.+-....+|..++=+|+=||..|
T Consensus 151 l~e~~~~l~DLesa~vkV~WLR~~L 175 (269)
T PF05278_consen 151 LKEMIATLKDLESAKVKVDWLRSKL 175 (269)
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHH
Confidence 4444444555555544444444433
No 331
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=43.09 E-value=3.1e+02 Score=27.08 Aligned_cols=40 Identities=28% Similarity=0.317 Sum_probs=18.2
Q ss_pred HHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHH
Q 018954 207 IKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQ 246 (348)
Q Consensus 207 ikStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ 246 (348)
|++|+.+|.+....-++..+-+||---|+=-..+....||
T Consensus 178 ~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 178 LQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555444444444445444444433334444333
No 332
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=42.65 E-value=3.8e+02 Score=27.20 Aligned_cols=75 Identities=19% Similarity=0.318 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhh---------hhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 018954 179 LESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKL---------ADKQAALEKSQWEAMTVSRKAEKLQEEV 249 (348)
Q Consensus 179 ae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~L---------adKqAaLEKlewEa~tsn~Kve~LQ~dl 249 (348)
+..++.+-..+...|++|++.+.|=..=|+.+.-++...++.. -++...|.+|| ..++|.+.||-|+
T Consensus 74 L~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLE----k~~~q~~qLe~d~ 149 (319)
T PF09789_consen 74 LSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLE----KLREQIEQLERDL 149 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3455666667777777777777666666666666665544433 45666666663 4567777787777
Q ss_pred hhhhhhHH
Q 018954 250 ESMQGEMS 257 (348)
Q Consensus 250 ~sm~~EIs 257 (348)
-++--|..
T Consensus 150 qs~lDEke 157 (319)
T PF09789_consen 150 QSLLDEKE 157 (319)
T ss_pred HHHHHHHH
Confidence 77665554
No 333
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=42.55 E-value=1.6e+02 Score=23.04 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 018954 179 LESSKSQVNAVHLKLDELKRLAAE 202 (348)
Q Consensus 179 ae~~~~em~a~~akvDELr~qlae 202 (348)
+..+.+++..|+.+||.|...+.-
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~ 28 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNA 28 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777776665543
No 334
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=42.44 E-value=2.4e+02 Score=24.90 Aligned_cols=98 Identities=22% Similarity=0.315 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHH-----hhHHHHhhhhHHHHHHHHHH
Q 018954 159 REQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQ-----LSDAKIKLADKQAALEKSQW 233 (348)
Q Consensus 159 reQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~Q-----Lsdaki~LadKqAaLEKlew 233 (348)
++++..+|.---+...++..--....+++.+...++||-+. .+-.-.-+.++.= ..++.-.| .--+|-||-
T Consensus 9 q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l-~eD~~vYk~VG~llvk~~k~~~~~eL---~er~E~Le~ 84 (119)
T COG1382 9 QAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKL-DEDAPVYKKVGNLLVKVSKEEAVDEL---EERKETLEL 84 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccHHHHHhhhHHhhhhHHHHHHHH---HHHHHHHHH
Confidence 44444444444445556666666677778888888888653 3333333333322 23333334 344677888
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhHHHHH
Q 018954 234 EAMTVSRKAEKLQEEVESMQGEMSSFM 260 (348)
Q Consensus 234 Ea~tsn~Kve~LQ~dl~sm~~EIsslm 260 (348)
.+.|=.+.-+++++.++.|+.+|....
T Consensus 85 ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 85 RIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999887543
No 335
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.39 E-value=4.8e+02 Score=28.28 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q 018954 221 LADKQAALEKSQWEAMTVSRKAEKLQEEVESMQG 254 (348)
Q Consensus 221 LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~ 254 (348)
|+|=.|-|+||+--+..+++++..|-...+..+.
T Consensus 288 l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~ 321 (521)
T KOG1937|consen 288 LDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQ 321 (521)
T ss_pred cCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677778888888888888888777666655543
No 336
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=42.38 E-value=2.9e+02 Score=28.05 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAA 227 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAa 227 (348)
..|..+..++|-|+++---|-+.+.|+..-|.-.|.+..+...-
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e 61 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNE 61 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Confidence 45777888999999999999999999999998888877665443
No 337
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=42.28 E-value=3.1e+02 Score=26.15 Aligned_cols=82 Identities=24% Similarity=0.309 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHh----hHHHHHHHhHHh----h
Q 018954 155 LVALREQVEDLQRKMFEKDELLK----SLESS-------KSQVNAVHLKLDELKRLAAE----KDSLIKSTQLQL----S 215 (348)
Q Consensus 155 l~~LreQVeeLqkKL~EKDelLk----Sae~~-------~~em~a~~akvDELr~qlae----Ke~likStq~QL----s 215 (348)
+..|.+.|+.|.-.+-++=+.|. +.-.+ +.++..+..|+|.+-+.|-- .|-|-..+|-|+ .
T Consensus 81 vinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
T TIGR02132 81 VINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKETIQKQIKTQGE 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhhhHH
Confidence 34567778888888777766666 32222 57788888899988877651 222222222222 1
Q ss_pred HHHHhhhhHHH-HHHHHHHHHH
Q 018954 216 DAKIKLADKQA-ALEKSQWEAM 236 (348)
Q Consensus 216 daki~LadKqA-aLEKlewEa~ 236 (348)
.-+..|-+||- .++|++-+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~ 182 (189)
T TIGR02132 161 QLQAQLLEKQEALAAKLKAEAK 182 (189)
T ss_pred HHHHHHHHHHHHHHHHhhhHHH
Confidence 22344555654 3466766665
No 338
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=42.13 E-value=1.2e+02 Score=30.92 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 018954 180 ESSKSQVNAVHLKLD 194 (348)
Q Consensus 180 e~~~~em~a~~akvD 194 (348)
+.+..+.|.+.++|-
T Consensus 45 ~~lr~~rn~~sk~i~ 59 (425)
T PRK05431 45 EELQAERNALSKEIG 59 (425)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 339
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=42.05 E-value=3.1e+02 Score=25.94 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HhHHhhHHHHhhhhHHHHHHHHHHH
Q 018954 178 SLESSKSQVNAVHLKLDELKRLAAEKDSLIKS---TQLQLSDAKIKLADKQAALEKSQWE 234 (348)
Q Consensus 178 Sae~~~~em~a~~akvDELr~qlaeKe~likS---tq~QLsdaki~LadKqAaLEKlewE 234 (348)
.+.....++..+++.++..++++.....|.+. .+.++-+++..+...++.|+.++-+
T Consensus 98 ~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~~~~ 157 (327)
T TIGR02971 98 DVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEALAS 157 (327)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777777777777776666653 3556666666666666666555433
No 340
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=41.79 E-value=2.7e+02 Score=30.92 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhH
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLK----SLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADK 224 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLk----Sae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadK 224 (348)
..+++..+.++.+|=..|-++--.+. .-..++.++..+.-.+++|+.+..+|-.-++-++.|+..-=..|+..
T Consensus 67 ~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~ 143 (660)
T KOG4302|consen 67 LQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGP 143 (660)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34666677777777666666655555 33345788888889999999999998888888888776544444443
No 341
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=41.71 E-value=4.9e+02 Score=28.26 Aligned_cols=61 Identities=13% Similarity=0.277 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHH
Q 018954 153 EELVALREQVEDLQRKMFE-------------KDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQ 213 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~E-------------KDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~Q 213 (348)
++|..|+.+++..+++|.. -..++..+..+..++..+..+..+|...+.++--.+++++.|
T Consensus 274 ~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~ 347 (726)
T PRK09841 274 RQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEK 347 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHH
Confidence 4555555555555444432 122333333334444444444444444444444444444444
No 342
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=41.67 E-value=2.8e+02 Score=25.39 Aligned_cols=114 Identities=12% Similarity=0.152 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHHHHHH--------HHHhhHHHHHHHhHHhhHHHHhh
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESS----KSQVNAVHLKLDELKR--------LAAEKDSLIKSTQLQLSDAKIKL 221 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~----~~em~a~~akvDELr~--------qlaeKe~likStq~QLsdaki~L 221 (348)
.-..|++.+..+++-|.+=+-.|.....- ..+++.....||.|-. .+.-=+.|.-.+..++..+...+
T Consensus 16 ~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~i~~~~~~~~~r~~l~~~~~~~e~~~ 95 (158)
T PF09486_consen 16 RERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFSIDEYLALRRYRDVLEERVRAAEAEL 95 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666666666655555443333 4666667777776654 34445566777778888888888
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 222 ADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 222 adKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
+--+.+|+..+-++...+.++.+++..++-...-|..|....+.-.
T Consensus 96 a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ea~~ 141 (158)
T PF09486_consen 96 AALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAEAAA 141 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhH
Confidence 8899999999999999999999999999999999999998887655
No 343
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=41.51 E-value=1.3e+02 Score=22.61 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHH
Q 018954 224 KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFM 260 (348)
Q Consensus 224 KqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm 260 (348)
|..-++.||-.+..-......|..++..+..++.+|.
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555554444444555555555555554443
No 344
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.31 E-value=56 Score=31.20 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=47.7
Q ss_pred HHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhhhc
Q 018954 212 LQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKN 269 (348)
Q Consensus 212 ~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it~N 269 (348)
.++..|+..+.-|+...+||.+==..+..||.+...+|..-+.-...+...|+.|+.|
T Consensus 129 re~~qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~n 186 (230)
T cd07625 129 RELIQAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGN 186 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888899999999887534446799999999998888888999999999855
No 345
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=40.67 E-value=5.2e+02 Score=28.56 Aligned_cols=73 Identities=19% Similarity=0.274 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhh---hHHHHHHHHHhhhhhhH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVS---RKAEKLQEEVESMQGEM 256 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn---~Kve~LQ~dl~sm~~EI 256 (348)
.++..++.++.+|++.+.+=...+..++..+.++...+..++..|+.++-++.... ..--+|-+++-.+.+-|
T Consensus 241 ~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 241 KKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 33455555555555555555555555555555555555555555655555555444 33333444444444333
No 346
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=40.61 E-value=2e+02 Score=23.32 Aligned_cols=97 Identities=15% Similarity=0.255 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH
Q 018954 155 LVALREQVEDLQRKMFEK---DELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS 231 (348)
Q Consensus 155 l~~LreQVeeLqkKL~EK---DelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKl 231 (348)
+..+|+-.+.....|.-+ ...+..+-.+-.+...+..++|+|+.+-..--..|.. ++..= ...+.|
T Consensus 4 ik~ir~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~-------~~~~~----~~~~~l 72 (108)
T PF02403_consen 4 IKLIRENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGK-------LKKAG----EDAEEL 72 (108)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCHTT----CCTHHH
T ss_pred HHHHHhCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HhhCc----ccHHHH
Confidence 334555555555555544 2455555555566666666666666554332222211 11110 233444
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhhHHHHHHH
Q 018954 232 QWEAMTVSRKAEKLQEEVESMQGEMSSFMQI 262 (348)
Q Consensus 232 ewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~ 262 (348)
--|+..-..++..|+.++...+.++..++..
T Consensus 73 ~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~ 103 (108)
T PF02403_consen 73 KAEVKELKEEIKELEEQLKELEEELNELLLS 103 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4456666666777777777777766666543
No 347
>PRK11519 tyrosine kinase; Provisional
Probab=40.49 E-value=5.1e+02 Score=28.10 Aligned_cols=62 Identities=16% Similarity=0.288 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHH
Q 018954 152 IEELVALREQVEDLQRKMFE-------------KDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQ 213 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~E-------------KDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~Q 213 (348)
.+.+..|+.+++..+++|.+ -..++..+.....++..+..++.+|...+.++--.+++++.+
T Consensus 273 ~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~l~~~ 347 (719)
T PRK11519 273 AQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLLEK 347 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHH
Confidence 34555555555555555432 222334444444555555555555554444444444444433
No 348
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=40.33 E-value=5.1e+02 Score=27.98 Aligned_cols=20 Identities=15% Similarity=0.310 Sum_probs=11.2
Q ss_pred HHHhhhhhhHHHHHHHHHHh
Q 018954 247 EEVESMQGEMSSFMQIFEGL 266 (348)
Q Consensus 247 ~dl~sm~~EIsslm~~fe~i 266 (348)
..+.+++..|.-|..++..|
T Consensus 428 ~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 428 EALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 34455666666666555443
No 349
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=40.25 E-value=1.4e+02 Score=28.75 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHH
Q 018954 228 LEKSQWEAMTVSRKAEKLQEEVESMQGEMSSF 259 (348)
Q Consensus 228 LEKlewEa~tsn~Kve~LQ~dl~sm~~EIssl 259 (348)
...||-|+-.-...+..|+.+|++++.+=-.|
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577788777778887777777777775444
No 350
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=39.75 E-value=2.9e+02 Score=28.11 Aligned_cols=108 Identities=21% Similarity=0.268 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHh--------hhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh
Q 018954 150 KEIEELVALREQVEDLQRKMF--------EKDE-------LLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQL 214 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~--------EKDe-------lLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QL 214 (348)
...-|+.+..++|+.|+.-.| +-|+ ++..=+.+.=+|.+++.++-||-.++.+-+-+=.-+--.|
T Consensus 180 ~~ipe~~~a~~~Ie~ll~~d~~v~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~lqel~~~~e~~~~~~ee~~~~l 259 (307)
T PF15112_consen 180 RNIPEIVAAGSRIEQLLTSDWAVHIPEEDQRDGCESETDVYLSESQILEIEMELLKEKLQELYLQAEEQEVLPEEDSKRL 259 (307)
T ss_pred ccChHHHHHHHHHHHHHhhhhhhcCchhhccchhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHH
Confidence 455688999999999995544 2222 1122233456778888888888777766553222222223
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHH
Q 018954 215 SDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQ 261 (348)
Q Consensus 215 sdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~ 261 (348)
.--+..|-.=....+.++=|+ .|+..|+-.+...+.+|+.+-.
T Consensus 260 ~~~~~fL~~NkDL~~~l~~e~----qkL~~l~~k~~~~~~~v~~~~~ 302 (307)
T PF15112_consen 260 EVLKEFLRNNKDLRSNLQEEL----QKLDSLQTKHQKLESDVKELKS 302 (307)
T ss_pred HHHHHHHHhcHHHHHHHHHHH----HHHHHHHHHhcchhhhhhHHHh
Confidence 333333433334444566666 6777777777777777766544
No 351
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=39.27 E-value=60 Score=28.03 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018954 171 EKDELLKSLESSKSQVNAVHLKLDELKRLAAE 202 (348)
Q Consensus 171 EKDelLkSae~~~~em~a~~akvDELr~qlae 202 (348)
+|.++...+.++..+|..++++|.+|+.++.+
T Consensus 2 dk~elfd~l~~le~~l~~l~~el~~LK~~~~e 33 (110)
T PRK13169 2 DKKEIFDALDDLEQNLGVLLKELGALKKQLAE 33 (110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888899999999999888864
No 352
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=39.08 E-value=1.3e+02 Score=25.32 Aligned_cols=46 Identities=15% Similarity=0.251 Sum_probs=36.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh
Q 018954 169 MFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQL 214 (348)
Q Consensus 169 L~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QL 214 (348)
|.-.+.+..+++.+..++..++.+++.++..+.+...-|+.++.++
T Consensus 72 l~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 72 LHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556677777888888888888888888888888888887776654
No 353
>PRK02119 hypothetical protein; Provisional
Probab=39.05 E-value=2e+02 Score=22.92 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHH
Q 018954 155 LVALREQVEDLQRKMFEKDELLKS 178 (348)
Q Consensus 155 l~~LreQVeeLqkKL~EKDelLkS 178 (348)
+..+.+.|.+|.-+|.-=+..+..
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~ 27 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEE 27 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666555544433
No 354
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=38.97 E-value=3.1e+02 Score=25.13 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 018954 183 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEV 249 (348)
Q Consensus 183 ~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl 249 (348)
..++......|+..++.+-..-.-...+...+..+.....-..+-+||++--+.....++++..++.
T Consensus 118 ~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~a~~~Y 184 (251)
T cd07653 118 QQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEAKNEY 184 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555444444455555554444333334556666666666665555544443
No 355
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=38.93 E-value=2e+02 Score=26.00 Aligned_cols=108 Identities=22% Similarity=0.266 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhh-----------
Q 018954 153 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKL----------- 221 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~L----------- 221 (348)
.++-.|+.||+.|+..+. ++..+++++....++|+.++..=-.||.||----.=---+++..
T Consensus 13 a~lq~l~~qie~L~~~i~-------~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg 85 (145)
T COG1730 13 AQLQILQSQIESLQAQIA-------ALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSG 85 (145)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCc
Confidence 345556666666665543 44555555555555555555432222333211000001112221
Q ss_pred ----hhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 222 ----ADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 222 ----adKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
-+.-.|+|-|+..+..=++-..+|++.+..+-..|..+.+..+.+.
T Consensus 86 ~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 86 YYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred eeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234455555555555555555555555555555555555554443
No 356
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=38.93 E-value=1.4e+02 Score=30.01 Aligned_cols=49 Identities=22% Similarity=0.355 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAE 202 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlae 202 (348)
=+..|+++++.|++++.+=++.|..-....+++..+..+++-+.+++.+
T Consensus 243 ~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~ 291 (406)
T PF02388_consen 243 YLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEE 291 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333333222222333333344444444433333
No 357
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=38.90 E-value=3.5e+02 Score=25.79 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018954 178 SLESSKSQVNAVHLKLDELKRLAA 201 (348)
Q Consensus 178 Sae~~~~em~a~~akvDELr~qla 201 (348)
|+-++...-.++...+..||..+.
T Consensus 54 s~Qqal~~aK~l~eEledLk~~~~ 77 (193)
T PF14662_consen 54 SLQQALQKAKALEEELEDLKTLAK 77 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555554443
No 358
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=38.58 E-value=6.5e+02 Score=28.75 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=12.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHH
Q 018954 295 LDDVEMQRMEEAREAYITAVAMA 317 (348)
Q Consensus 295 ~~~~e~ekmE~aR~aY~aAvaaA 317 (348)
++..+++.+++.-..|-.++..+
T Consensus 774 ~~~~~~~~l~~~i~~~~~~~~~~ 796 (1047)
T PRK10246 774 LDEETLTQLEQLKQNLENQRQQA 796 (1047)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666665555555544433
No 359
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=38.41 E-value=6e+02 Score=28.30 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHhHHhhHHHHhhhhHHHHHHHH
Q 018954 153 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEK-DSLIKSTQLQLSDAKIKLADKQAALEKS 231 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeK-e~likStq~QLsdaki~LadKqAaLEKl 231 (348)
.++-.|-+.++..++++ ++..+.++....++..+++.+.+.+..+.++ +.+++.+ ..+|+..+.+.+...+.+
T Consensus 516 ~~~~~li~~l~~~~~~~---e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~---~~~a~~~l~~a~~~~~~~ 589 (782)
T PRK00409 516 EKLNELIASLEELEREL---EQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA---EKEAQQAIKEAKKEADEI 589 (782)
T ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34444444444444444 3445556666666667777776666665443 3333333 334556666777777777
Q ss_pred HHHHHH
Q 018954 232 QWEAMT 237 (348)
Q Consensus 232 ewEa~t 237 (348)
-.++..
T Consensus 590 i~~lk~ 595 (782)
T PRK00409 590 IKELRQ 595 (782)
T ss_pred HHHHHH
Confidence 777765
No 360
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=38.33 E-value=3.2e+02 Score=27.26 Aligned_cols=13 Identities=38% Similarity=0.718 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 018954 157 ALREQVEDLQRKM 169 (348)
Q Consensus 157 ~LreQVeeLqkKL 169 (348)
-|++-.++++.||
T Consensus 132 d~ke~~ee~kekl 144 (290)
T COG4026 132 DLKEDYEELKEKL 144 (290)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 361
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=38.22 E-value=1.7e+02 Score=27.86 Aligned_cols=46 Identities=9% Similarity=0.195 Sum_probs=26.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 218 KIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 218 ki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
...|.=|+.-|-.++-..-..+..+..+.+||+.++.++..|...+
T Consensus 138 EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L 183 (195)
T PF12761_consen 138 EQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLESHL 183 (195)
T ss_pred HHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333445566777777777777777776665
No 362
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=38.04 E-value=2.1e+02 Score=33.72 Aligned_cols=84 Identities=14% Similarity=0.225 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
-..+-+...+..++..++..+.-.+.+..+|.....+|.+..+.++++..+.+.-..+...++++++.-+..+..--.++
T Consensus 920 ~~~~kv~~~v~p~~~~~~~~e~~~~~~~~~l~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~a~~Li 999 (1395)
T KOG3595|consen 920 DKYSKVLKVVEPKRQELARLEAELKAAMKELEEKSAELQDLEEKLQRLKDEYEQLIAEKQELEEDMDACELKLLRAEELI 999 (1395)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677788888899999999999999999999999999999999999999999999989999888888877555555
Q ss_pred HHhh
Q 018954 264 EGLI 267 (348)
Q Consensus 264 e~it 267 (348)
..++
T Consensus 1000 ~~Ls 1003 (1395)
T KOG3595|consen 1000 QGLS 1003 (1395)
T ss_pred Hhcc
Confidence 4433
No 363
>PRK04325 hypothetical protein; Provisional
Probab=37.87 E-value=1.5e+02 Score=23.59 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhHHhhH
Q 018954 187 NAVHLKLDELKRLAAEKDSLIKSTQLQLSD 216 (348)
Q Consensus 187 ~a~~akvDELr~qlaeKe~likStq~QLsd 216 (348)
+.+.+.|++|.-.+|-=|..|..++..+..
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~ 34 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVAR 34 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443333
No 364
>PRK02119 hypothetical protein; Provisional
Probab=37.48 E-value=1.5e+02 Score=23.62 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhHHhh
Q 018954 186 VNAVHLKLDELKRLAAEKDSLIKSTQLQLS 215 (348)
Q Consensus 186 m~a~~akvDELr~qlaeKe~likStq~QLs 215 (348)
|..+.+.|++|.-.+|==|-.|..++..+.
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~ 33 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALI 33 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555444444444444333
No 365
>PF11819 DUF3338: Domain of unknown function (DUF3338); InterPro: IPR021774 This family of proteins are functionally uncharacterised. This family is found in eukaryotes. This presumed domain is about 130 amino acids in length.
Probab=37.15 E-value=1.1e+02 Score=27.70 Aligned_cols=49 Identities=31% Similarity=0.282 Sum_probs=36.6
Q ss_pred CCCccccchh----hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 018954 135 SDSFSIFSSR----ALVSEKEIEELVALREQVEDLQRKMFEKDELLKSLESSK 183 (348)
Q Consensus 135 ~en~s~~~s~----~~~~~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~ 183 (348)
++|+++..|. .......++=+.+|+.+=+.|+.+|..|=+-||-+=.-.
T Consensus 10 ~~sg~~l~sgs~~~~~~~~~~~e~~~~Lk~rk~~Lee~L~~kl~ELk~lClrE 62 (138)
T PF11819_consen 10 TSSGSILSSGSKDSESEEAAKKERLRALKKRKQALEERLAQKLEELKKLCLRE 62 (138)
T ss_pred cCCcceecCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566665554 233336677788999999999999999998888776665
No 366
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=37.03 E-value=2.5e+02 Score=30.88 Aligned_cols=61 Identities=25% Similarity=0.308 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhh---HHHHHHHHHHHHHHhhhHHH
Q 018954 183 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLAD---KQAALEKSQWEAMTVSRKAE 243 (348)
Q Consensus 183 ~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~Lad---KqAaLEKlewEa~tsn~Kve 243 (348)
.++|+.|+++-+||-++|.+=-+..+-.|--.||||+.||. |-.+==|--|=+++--+-++
T Consensus 617 r~qIh~Le~~Reelsk~V~DLtssaQgakKAVhdaK~ElA~~Y~klLagiKEKwv~KKe~t~le 680 (790)
T PF07794_consen 617 RNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHDAKVELAAAYSKLLAGIKEKWVAKKEYTVLE 680 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 58899999999999999999999999999999999999996 34444455676655544433
No 367
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=36.55 E-value=3.2e+02 Score=29.35 Aligned_cols=39 Identities=15% Similarity=0.348 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 018954 160 EQVEDLQRKMFEKDELLKSLESS---KSQVNAVHLKLDELKR 198 (348)
Q Consensus 160 eQVeeLqkKL~EKDelLkSae~~---~~em~a~~akvDELr~ 198 (348)
..++++++.+-++....++.... +.++.+++.+|++++.
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKK 205 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHh
Confidence 45566666666655555533322 4566666666666655
No 368
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=36.43 E-value=1.4e+02 Score=27.96 Aligned_cols=53 Identities=17% Similarity=0.267 Sum_probs=27.0
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHhhhHHH---HHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 214 LSDAKIKLADKQAALEKSQWEAMTVSRKAE---KLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 214 Lsdaki~LadKqAaLEKlewEa~tsn~Kve---~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
..|....|..+++..++|. +++..-++++ +++.+|+..+.||-++......|.
T Consensus 134 y~D~~arl~~l~~~~~rl~-~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~ 189 (262)
T PF14257_consen 134 YVDLEARLKNLEAEEERLL-ELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLD 189 (262)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444432 2232333444 556666666777766666666555
No 369
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=36.19 E-value=5.7e+02 Score=27.43 Aligned_cols=88 Identities=19% Similarity=0.385 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS 231 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKl 231 (348)
++-|++|=.++.++.++|.+ + ..+=..+.++-+.||+.-..=|.-|.+ .|...+..+
T Consensus 58 ~DTlrTlva~~k~~r~~~~~---l-------~~~N~~l~~eN~~L~~r~~~id~~i~~---av~~~~~~~---------- 114 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAK---L-------ISENEALKAENERLQKREQSIDQQIQQ---AVQSETQEL---------- 114 (472)
T ss_pred cchHHHHHHHHHHHHHHHHH---H-------HHHHHHHHHHHHHHHHhhhhHHHHHHH---HHHhhhHHH----------
Confidence 45788888888888877642 2 223333444444444433332222221 122222111
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhhhc
Q 018954 232 QWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKN 269 (348)
Q Consensus 232 ewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it~N 269 (348)
.+..+.|+.++..++..|..|+..|+.+..+
T Consensus 115 -------~~~~~ql~~~~~~~~~~l~~l~~~l~~~~~~ 145 (472)
T TIGR03752 115 -------TKEIEQLKSERQQLQGLIDQLQRRLAGVLTG 145 (472)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 1234556667777778888888888776643
No 370
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=36.18 E-value=5.2e+02 Score=26.89 Aligned_cols=54 Identities=33% Similarity=0.442 Sum_probs=36.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018954 144 RALVSEKEIEELVALREQVEDLQ----RKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEK 203 (348)
Q Consensus 144 ~~~~~~kd~eEl~~LreQVeeLq----kKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeK 203 (348)
+-.-+.|.+|=+..|+..-++++ +++-||+.-|+.+| ..++++.|.|++...|-
T Consensus 321 qet~eaKr~e~~~e~qrkEee~rqmFvqrvkekE~elke~E------kel~~kf~~lkr~h~eE 378 (406)
T KOG3859|consen 321 QETYEAKRNEFLGELQRKEEEMRQMFVQRVKEKEAELKEAE------KELHEKFDRLKRLHQEE 378 (406)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 34445577777777777666654 56777777777766 46777888887765543
No 371
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=36.09 E-value=3.2e+02 Score=24.48 Aligned_cols=64 Identities=13% Similarity=0.072 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 018954 185 QVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEE 248 (348)
Q Consensus 185 em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~d 248 (348)
++...+..+...+..+..++..|..++-+.......-+.....++++.--+..+.++.++|..+
T Consensus 27 ~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~E 90 (135)
T TIGR03495 27 DLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRE 90 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333344444444444444444444444443323333333333344444444555555544443
No 372
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=36.06 E-value=1e+02 Score=29.35 Aligned_cols=92 Identities=17% Similarity=0.229 Sum_probs=58.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 018954 169 MFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEE 248 (348)
Q Consensus 169 L~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~d 248 (348)
+...-.-|--+|+...+ |.+.-.-+.+.+++-+.=...+|..|.-+...-+.....-....-|+..-+..-...|..
T Consensus 93 F~~Qt~~LA~~eirR~~---LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQ 169 (192)
T PF11180_consen 93 FAQQTARLADVEIRRAQ---LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQ 169 (192)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444433 445556667778888888888888888777776666666666677776666666666666
Q ss_pred HhhhhhhHHHHHHHH
Q 018954 249 VESMQGEMSSFMQIF 263 (348)
Q Consensus 249 l~sm~~EIsslm~~f 263 (348)
|+.++..|-.|....
T Consensus 170 L~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 170 LRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666666665544
No 373
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=36.05 E-value=75 Score=27.12 Aligned_cols=32 Identities=31% Similarity=0.483 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018954 171 EKDELLKSLESSKSQVNAVHLKLDELKRLAAE 202 (348)
Q Consensus 171 EKDelLkSae~~~~em~a~~akvDELr~qlae 202 (348)
+|-++...+..+..+|..++++|.+||.++.+
T Consensus 2 dk~~l~~~l~~le~~l~~l~~~~~~LK~~~~~ 33 (107)
T PF06156_consen 2 DKKELFDRLDQLEQQLGQLLEELEELKKQLQE 33 (107)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677778888888888888888888887753
No 374
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=35.74 E-value=36 Score=36.13 Aligned_cols=15 Identities=20% Similarity=0.607 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 018954 154 ELVALREQVEDLQRKM 169 (348)
Q Consensus 154 El~~LreQVeeLqkKL 169 (348)
|+..|| |||+|+++|
T Consensus 26 ~~~~~q-kie~L~kql 40 (489)
T PF11853_consen 26 DIDLLQ-KIEALKKQL 40 (489)
T ss_pred hhHHHH-HHHHHHHHH
Confidence 333344 555555443
No 375
>PRK14143 heat shock protein GrpE; Provisional
Probab=35.46 E-value=1.9e+02 Score=27.89 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhHHhh
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLA-AEKDSLIKSTQLQLS 215 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~ql-aeKe~likStq~QLs 215 (348)
...+++..|.++++.|++++.+ ++++..-++|.++-+|+.. .|++.+++.....+-
T Consensus 64 ~~~~~~~~l~~el~~l~~e~~e----------lkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~ 120 (238)
T PRK14143 64 DNAARLAQLEQELESLKQELEE----------LNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTL 120 (238)
T ss_pred cchhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677788888888777765 2344455566666666655 456666666555443
No 376
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=35.23 E-value=5e+02 Score=26.43 Aligned_cols=108 Identities=19% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhHHhhHHHHhhhhHHHHHHHHHH
Q 018954 155 LVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAE-KDSLIKSTQLQLSDAKIKLADKQAALEKSQW 233 (348)
Q Consensus 155 l~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlae-Ke~likStq~QLsdaki~LadKqAaLEKlew 233 (348)
|..|.-+.+.|-.++---+|.|. ..+...++-+...-.+|-..+.. .+++|--++.+|.........++..|++|..
T Consensus 86 l~~l~keKe~L~~~~e~EEE~lt--n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~ 163 (310)
T PF09755_consen 86 LQQLKKEKETLALKYEQEEEFLT--NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRR 163 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHhhhH--------HHHHHHHHhhhhhhHHHHHHHHH
Q 018954 234 EAMTVSRK--------AEKLQEEVESMQGEMSSFMQIFE 264 (348)
Q Consensus 234 Ea~tsn~K--------ve~LQ~dl~sm~~EIsslm~~fe 264 (348)
|-+.=.-. |++|+..++.|..|=-.|...++
T Consensus 164 EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 164 EKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 377
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=35.10 E-value=3.1e+02 Score=23.95 Aligned_cols=72 Identities=24% Similarity=0.350 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESS---KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEK 230 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~---~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEK 230 (348)
|+.+|+.++.-|++ +||.+-..+-.+ ..++.+..+.+..|+.++.+ ++.....+=.+|++|---+|.
T Consensus 31 E~~~l~~el~~l~~---~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~-------l~~ry~t~LellGEK~E~veE 100 (120)
T PF12325_consen 31 ELASLQEELARLEA---ERDELREEIVKLMEENEELRALKKEVEELEQELEE-------LQQRYQTLLELLGEKSEEVEE 100 (120)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcchHHHHHH
Confidence 77778877777764 344443332222 23344444555555555443 444555556677777777776
Q ss_pred HHHHH
Q 018954 231 SQWEA 235 (348)
Q Consensus 231 lewEa 235 (348)
|+--+
T Consensus 101 L~~Dv 105 (120)
T PF12325_consen 101 LRADV 105 (120)
T ss_pred HHHHH
Confidence 66543
No 378
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=35.10 E-value=5.2e+02 Score=26.60 Aligned_cols=110 Identities=18% Similarity=0.269 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhh----hh
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSL----ESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKL----AD 223 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSa----e~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~L----ad 223 (348)
-.|+..|..|..-|++|+--|-++++-+ |.+.++-.-+.+-++-|..-+.-=++=.+-+-.==-+++|.. .+
T Consensus 8 ga~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqd 87 (389)
T KOG4687|consen 8 GAEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQD 87 (389)
T ss_pred cHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhH
Confidence 3589999999999999999999998765 445555555555555444444322221111111224678887 67
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHH
Q 018954 224 KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQ 261 (348)
Q Consensus 224 KqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~ 261 (348)
.-|.+++.-.|--+-.+-++.|......+-++.-.|+.
T Consensus 88 Laa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfRe 125 (389)
T KOG4687|consen 88 LAADIEETKEENLKLRTDREALLDQKADLHGDCELFRE 125 (389)
T ss_pred HHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHH
Confidence 78888888888888888888888888888887776664
No 379
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=34.91 E-value=1.4e+02 Score=26.92 Aligned_cols=37 Identities=32% Similarity=0.523 Sum_probs=23.5
Q ss_pred HHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018954 165 LQRKMFE-KDELLKSLESSKSQVNAVHLKLDELKRLAA 201 (348)
Q Consensus 165 LqkKL~E-KDelLkSae~~~~em~a~~akvDELr~qla 201 (348)
++.+|-| |+.+++.++-+.+++..+.+.+++|+..|=
T Consensus 82 ~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LY 119 (131)
T KOG1760|consen 82 LQDQLEEKKETLEKEIEELESELESISARMDELKKVLY 119 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443 344566777777777777777777777653
No 380
>PLN02678 seryl-tRNA synthetase
Probab=34.71 E-value=1.9e+02 Score=30.31 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018954 179 LESSKSQVNAVHLKLDE 195 (348)
Q Consensus 179 ae~~~~em~a~~akvDE 195 (348)
++.+..+.|.+-++|-.
T Consensus 49 ~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 49 LDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 381
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=34.33 E-value=1.8e+02 Score=31.63 Aligned_cols=99 Identities=21% Similarity=0.255 Sum_probs=51.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hHHhhHHHHhhhhHH
Q 018954 148 SEKEIEELVALREQVEDLQRKMFEKDE-LLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKST-QLQLSDAKIKLADKQ 225 (348)
Q Consensus 148 ~~kd~eEl~~LreQVeeLqkKL~EKDe-lLkSae~~~~em~a~~akvDELr~qlaeKe~likSt-q~QLsdaki~LadKq 225 (348)
-++++|=|.+|++|++||.+---|--| .|-+--.++- -.+-|||||..+.=-=- |-++ +-||+ .+ --
T Consensus 144 ~e~qkeLi~QLk~Ql~dLE~~AYe~Geg~LPq~viLek----Qk~ilDeLr~Kl~lnl~-i~~lsteelr-~q-----VD 212 (621)
T KOG3759|consen 144 NERQKELIKQLKEQLEDLERTAYENGEGELPQTVILEK----QKAILDELREKLELNLD-IDKLSTEELR-RQ-----VD 212 (621)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHH----HHHHHHHHHHHhhccCC-cccccHHHHH-HH-----HH
Confidence 458889999999999999887655432 1111111111 12335666554421100 1111 11111 01 12
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 018954 226 AALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 257 (348)
Q Consensus 226 AaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIs 257 (348)
+||-++=.=+++...=|+.|+-.+-.++-=|.
T Consensus 213 ~A~~q~VnP~k~KeQLV~QLkTQItDLErFIn 244 (621)
T KOG3759|consen 213 DALKQLVNPFKEKEQLVDQLKTQITDLERFIN 244 (621)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566667778888887776664343
No 382
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=34.20 E-value=3.7e+02 Score=24.61 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 018954 187 NAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESM 252 (348)
Q Consensus 187 ~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm 252 (348)
..+...+.+-+..+...+.-+..-..+|......|..+...|++.+-++......++....++..+
T Consensus 67 ~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~ 132 (201)
T PF12072_consen 67 QELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEEL 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666555555555555555555555555555555555555555444444433
No 383
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.19 E-value=4.3e+02 Score=29.71 Aligned_cols=98 Identities=19% Similarity=0.255 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHhHHhhHH--------------------
Q 018954 159 REQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSL-IKSTQLQLSDA-------------------- 217 (348)
Q Consensus 159 reQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~l-ikStq~QLsda-------------------- 217 (348)
-+|+-.||.+.-=|.++..--.+...++--++|+++||+--+-+-|-+ +.|++-+|..|
T Consensus 412 s~~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~~R~q~R 491 (852)
T KOG4787|consen 412 TTQVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKLHRKQVR 491 (852)
T ss_pred HHHHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHHHHHHHh
Confidence 345555555555556665555555678888888888887666655532 34455544433
Q ss_pred --HHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 018954 218 --KIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 257 (348)
Q Consensus 218 --ki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIs 257 (348)
.+.-.| -..+-+||-|+..|++=.-+|+.++..+.--|.
T Consensus 492 ~~~~~~~d-~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~ 532 (852)
T KOG4787|consen 492 DGEIQYSD-ELKIKILELEKRLSEKLAIDLVSELEGKIPTID 532 (852)
T ss_pred hhhhccch-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHh
Confidence 333221 123556899999999999999988876654333
No 384
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=34.17 E-value=5.9e+02 Score=26.99 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 018954 177 KSLESSKSQVNAVHLKLDELKRLAAEKD 204 (348)
Q Consensus 177 kSae~~~~em~a~~akvDELr~qlaeKe 204 (348)
.....+..+++.+...++.+...++++.
T Consensus 344 ~~~~~l~~~l~~l~~~~~~~~~~i~~~~ 371 (560)
T PF06160_consen 344 EIVRELEKQLKELEKRYEDLEERIEEQQ 371 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3334444555666666666665555554
No 385
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=34.09 E-value=1.1e+02 Score=27.27 Aligned_cols=42 Identities=10% Similarity=0.243 Sum_probs=23.2
Q ss_pred hHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 018954 211 QLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESM 252 (348)
Q Consensus 211 q~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm 252 (348)
..++.+.+-.+...++.++|||+|+-..-..+..|+++|+..
T Consensus 79 ~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~ 120 (131)
T PF04859_consen 79 AAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDEL 120 (131)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555566666666665555555555555543
No 386
>PRK14161 heat shock protein GrpE; Provisional
Probab=34.01 E-value=2e+02 Score=26.58 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhh-hHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFE-KDELLKSL 179 (348)
Q Consensus 154 El~~LreQVeeLqkKL~E-KDelLkSa 179 (348)
.+..+++++++|++++.+ ||.+|+..
T Consensus 20 ~~~~~~~ei~~l~~e~~elkd~~lR~~ 46 (178)
T PRK14161 20 IVETANPEITALKAEIEELKDKLIRTT 46 (178)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544 44444433
No 387
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=34.00 E-value=3.4e+02 Score=24.87 Aligned_cols=8 Identities=13% Similarity=0.106 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 018954 159 REQVEDLQ 166 (348)
Q Consensus 159 reQVeeLq 166 (348)
+.++..++
T Consensus 70 ~~~~~~~~ 77 (322)
T TIGR01730 70 LAQLAAAE 77 (322)
T ss_pred HHHHHHHH
Confidence 33333333
No 388
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=34.00 E-value=3.9e+02 Score=25.81 Aligned_cols=36 Identities=8% Similarity=0.433 Sum_probs=29.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhhhhHH---HHHHHHHH
Q 018954 230 KSQWEAMTVSRKAEKLQEEVESMQGEMS---SFMQIFEG 265 (348)
Q Consensus 230 KlewEa~tsn~Kve~LQ~dl~sm~~EIs---slm~~fe~ 265 (348)
|-+-++..-++|+-+|+.-|..+..+|. +.-.+++.
T Consensus 126 r~~eel~~a~~K~qemE~RIK~LhaqI~EKDAmIkVLQq 164 (205)
T PF12240_consen 126 REEEELHMANRKCQEMENRIKALHAQIAEKDAMIKVLQQ 164 (205)
T ss_pred cchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999887 55555554
No 389
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=33.96 E-value=52 Score=25.58 Aligned_cols=20 Identities=10% Similarity=0.278 Sum_probs=7.5
Q ss_pred HHHHHHhhhhhhHHHHHHHH
Q 018954 244 KLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 244 ~LQ~dl~sm~~EIsslm~~f 263 (348)
+|+.+|+.+...|+++....
T Consensus 4 elEn~~~~~~~~i~tvk~en 23 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKEN 23 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 390
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=33.15 E-value=3e+02 Score=31.14 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=9.2
Q ss_pred HHHHHHhhhhhhHHHHH
Q 018954 244 KLQEEVESMQGEMSSFM 260 (348)
Q Consensus 244 ~LQ~dl~sm~~EIsslm 260 (348)
.|++.-+++..||++..
T Consensus 716 ~lkek~e~l~~e~~~~~ 732 (762)
T PLN03229 716 ELKEKFEELEAELAAAR 732 (762)
T ss_pred hHHHHHHHHHHHHHHhh
Confidence 45555556666665543
No 391
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=33.01 E-value=7.9e+02 Score=28.10 Aligned_cols=27 Identities=26% Similarity=0.228 Sum_probs=13.2
Q ss_pred CCCCCCCh--HHHHHHHHHHHHHHHHHHH
Q 018954 290 SDIDDLDD--VEMQRMEEAREAYITAVAM 316 (348)
Q Consensus 290 ~~~de~~~--~e~ekmE~aR~aY~aAvaa 316 (348)
.+..++.. ..++..+.++...-++++.
T Consensus 774 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~ 802 (1047)
T PRK10246 774 LDEETLTQLEQLKQNLENQRQQAQTLVTQ 802 (1047)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443 3455555555555554443
No 392
>PRK00295 hypothetical protein; Provisional
Probab=32.93 E-value=2.4e+02 Score=22.10 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018954 158 LREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLA 200 (348)
Q Consensus 158 LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~ql 200 (348)
+.+.|++|+-||.-=+..+.++. ..|..-+..||.|++++
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln---~~v~~Qq~~I~~L~~ql 42 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALN---DVLVEQQRVIERLQLQM 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 45567777777766655444333 33333444445554443
No 393
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=32.83 E-value=4.5e+02 Score=25.21 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHH
Q 018954 183 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAE 243 (348)
Q Consensus 183 ~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve 243 (348)
..++.++.+++-+|++..+.=|+=|+++++-|+- -++|-.+.+|--|+.--..+..
T Consensus 85 d~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~-----eemQe~i~~L~kev~~~~erl~ 140 (201)
T KOG4603|consen 85 DGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT-----EEMQEEIQELKKEVAGYRERLK 140 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3788899999999999999999999988888763 3344444444444444443333
No 394
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=32.63 E-value=1.7e+02 Score=26.04 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018954 184 SQVNAVHLKLDELKRLAA 201 (348)
Q Consensus 184 ~em~a~~akvDELr~qla 201 (348)
.+...+++++.+|++++.
T Consensus 40 ~~~~~l~~Ei~~l~~E~~ 57 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELN 57 (161)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555555543
No 395
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=32.38 E-value=5.9e+02 Score=26.45 Aligned_cols=98 Identities=15% Similarity=0.214 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhh--------hHHH-HHHHHHHHHHHhhhHHH
Q 018954 175 LLKSLESSKSQVN--AVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLA--------DKQA-ALEKSQWEAMTVSRKAE 243 (348)
Q Consensus 175 lLkSae~~~~em~--a~~akvDELr~qlaeKe~likStq~QLsdaki~La--------dKqA-aLEKlewEa~tsn~Kve 243 (348)
+|+.-|.++|++| |-+.+|-.-.-.|..=+.-++-++..|++-.++-+ +-|+ .+-+||-|+.+-+++..
T Consensus 161 ilkqse~lIN~Ls~rAr~dt~r~Ae~eV~~~eerv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~ 240 (372)
T COG3524 161 ILKQSEKLINQLSERARRDTVRFAEEEVQKAEERVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLD 240 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555554 23333433344444444555666667776665532 2333 45789999999999999
Q ss_pred HHHHHH-------hhhhhhHHHHHHHH----HHhhhcCCC
Q 018954 244 KLQEEV-------ESMQGEMSSFMQIF----EGLIKNDST 272 (348)
Q Consensus 244 ~LQ~dl-------~sm~~EIsslm~~f----e~it~N~S~ 272 (348)
.++.-+ --+.++|.|+.+++ ++|+.+.++
T Consensus 241 tvks~m~~~nPqi~~LkarieSlrkql~qe~q~isag~~~ 280 (372)
T COG3524 241 TVKSVMNPENPQIPGLKARIESLRKQLLQEKQAISAGGSS 280 (372)
T ss_pred HHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 888766 45778888888776 568876665
No 396
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=32.29 E-value=9e+02 Score=28.52 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLK-------------SLESSKSQVNAVHLKLDELKRLAAEKDSLI 207 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLk-------------Sae~~~~em~a~~akvDELr~qlaeKe~li 207 (348)
+.+++...|+.++++.-+++.+-..-|. |...+..+++..++.+-+++++++.-.+.+
T Consensus 62 ~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~ 132 (1109)
T PRK10929 62 GSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRA 132 (1109)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4445555666666554444333322222 134445666666666666666666543333
No 397
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=32.26 E-value=3.3e+02 Score=23.52 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 018954 157 ALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDS 205 (348)
Q Consensus 157 ~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~ 205 (348)
.+--|+=.+-.++-||-.-.+.+..-.++|..+.+++|.||.+-.+|=.
T Consensus 43 ~mH~~LL~~i~~~ee~R~~~E~lQdkL~qi~eAR~AlDalR~eH~~klr 91 (96)
T PF12210_consen 43 AMHPQLLKYIQEQEEKRVYYEGLQDKLAQIKEARAALDALREEHREKLR 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555666666667889999999999998888744
No 398
>PRK14140 heat shock protein GrpE; Provisional
Probab=32.13 E-value=2.5e+02 Score=26.34 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHH
Q 018954 151 EIEELVALREQVEDLQRKMFE-KDELLKSLESSK 183 (348)
Q Consensus 151 d~eEl~~LreQVeeLqkKL~E-KDelLkSae~~~ 183 (348)
.-++|-.|..+|++|++++.+ ||.+|+..-.+.
T Consensus 35 ~~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~e 68 (191)
T PRK14140 35 EAELLDEEQAKIAELEAKLDELEERYLRLQADFE 68 (191)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777655 444444444333
No 399
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=31.83 E-value=6.2e+02 Score=26.67 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 018954 183 KSQVNAVHLKLDELKRLAAEKDSLIKSTQ 211 (348)
Q Consensus 183 ~~em~a~~akvDELr~qlaeKe~likStq 211 (348)
..++....+++..|++++++.+.++....
T Consensus 75 ~~~l~~a~~e~~~L~~eL~~~~~~l~~L~ 103 (593)
T PF06248_consen 75 QPQLRDAAEELQELKRELEENEQLLEVLE 103 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666666555443
No 400
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=31.81 E-value=6.6e+02 Score=26.84 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHH
Q 018954 162 VEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQ 232 (348)
Q Consensus 162 VeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKle 232 (348)
...+..++..-.++....+...+++..++..+.++..++++ .+..|...+....+|.+.|++.+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------l~~~le~~~~~~~ek~~~l~~~~ 108 (475)
T PRK10361 45 LSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLRE-------VTTRMEAAQQHADDKIRQMINSE 108 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444444444444444 44455555555566666666543
No 401
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=31.61 E-value=1.2e+02 Score=33.68 Aligned_cols=63 Identities=17% Similarity=0.263 Sum_probs=38.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHhhhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 018954 143 SRALVSEKEIEELVALREQVEDLQRKMFEKD---------ELLKSLESSKSQVNAVHLKLDELKRLAAEKDS 205 (348)
Q Consensus 143 s~~~~~~kd~eEl~~LreQVeeLqkKL~EKD---------elLkSae~~~~em~a~~akvDELr~qlaeKe~ 205 (348)
+-....++-.+-|-+|++||.+++..|+-.- -=++++|.....+.-++.+|.-|..|..+||-
T Consensus 633 ~h~~smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~~q~~dkee 704 (759)
T KOG0981|consen 633 THEKSMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKLEIQMTDKEE 704 (759)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHhhhccchhh
Confidence 3344455666667777777777777665431 12345566666666666666666666666663
No 402
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.50 E-value=5.5e+02 Score=29.76 Aligned_cols=70 Identities=20% Similarity=0.207 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHH-------HHHHHHHhhhHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhHHHHHHHhH
Q 018954 150 KEIEELVALREQV-------EDLQRKMFEKDELLKSLESSK----------SQVNAVHLKLDELKRLAAEKDSLIKSTQL 212 (348)
Q Consensus 150 kd~eEl~~LreQV-------eeLqkKL~EKDelLkSae~~~----------~em~a~~akvDELr~qlaeKe~likStq~ 212 (348)
-..+|+.+++.+. +.|.++|-+|+....+..... .-+.-.+.++-|+.+.++|++.-.+..|.
T Consensus 734 t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~ 813 (970)
T KOG0946|consen 734 TQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQS 813 (970)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHH
Confidence 3445666666544 556677777887777666553 23344456677787778888888888888
Q ss_pred HhhHHHH
Q 018954 213 QLSDAKI 219 (348)
Q Consensus 213 QLsdaki 219 (348)
++.--|.
T Consensus 814 e~~~~ke 820 (970)
T KOG0946|consen 814 ELTQLKE 820 (970)
T ss_pred HHHHHHH
Confidence 8765554
No 403
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=31.41 E-value=8e+02 Score=27.63 Aligned_cols=93 Identities=23% Similarity=0.285 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHH
Q 018954 151 EIEELVALREQVEDLQRKMFEKDELLKS-LESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALE 229 (348)
Q Consensus 151 d~eEl~~LreQVeeLqkKL~EKDelLkS-ae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLE 229 (348)
...|+..|+..+..|+.++.+-..--+- -....+++..+..++.-+.+...+....|..++.+|+.+.-.-++.++.|-
T Consensus 364 av~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~Ln 443 (717)
T PF09730_consen 364 AVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLN 443 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3445666666666665555544431111 112246667777777777666666666777777777777777777777776
Q ss_pred HHHHHHHHhhhHHH
Q 018954 230 KSQWEAMTVSRKAE 243 (348)
Q Consensus 230 KlewEa~tsn~Kve 243 (348)
-.|-|+.+-+.=..
T Consensus 444 sAQDELvtfSEeLA 457 (717)
T PF09730_consen 444 SAQDELVTFSEELA 457 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666665444333
No 404
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=31.24 E-value=72 Score=25.29 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 018954 300 MQRMEEAREAYITAVAMAKEKQDEESMATAARA 332 (348)
Q Consensus 300 ~ekmE~aR~aY~aAvaaAKenp~eEsl~~aAea 332 (348)
....|+|..+.-+||..|+++-|..+|+.|-..
T Consensus 54 ~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~ 86 (94)
T PF12862_consen 54 FGHYEEALQALEEAIRLARENGDRRCLAYALSW 86 (94)
T ss_pred hCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 445689999999999999999999999887543
No 405
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=31.05 E-value=3.7e+02 Score=23.60 Aligned_cols=45 Identities=22% Similarity=0.327 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHH
Q 018954 183 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAA 227 (348)
Q Consensus 183 ~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAa 227 (348)
+.+=..|.+.+..|+.+.+....-|-.+|.++.++.+.|.++.-|
T Consensus 36 ~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~a 80 (107)
T PF09304_consen 36 AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQA 80 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666666677776666667777777777777777765443
No 406
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=30.97 E-value=2.8e+02 Score=24.71 Aligned_cols=53 Identities=21% Similarity=0.346 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018954 149 EKEIEELVALREQVEDLQRKMFE---KDELLKSLESSKSQVNAVHLKLDELKRLAAE 202 (348)
Q Consensus 149 ~kd~eEl~~LreQVeeLqkKL~E---KDelLkSae~~~~em~a~~akvDELr~qlae 202 (348)
.+...+...|+.+|.+|++++.- .||--|-+. +.-+++.+.+++++++.++..
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaK-l~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAK-LNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 56677888899999998887643 455444444 233444444444444444433
No 407
>PRK01203 prefoldin subunit alpha; Provisional
Probab=30.86 E-value=1.4e+02 Score=26.63 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=0.0
Q ss_pred CCCCCccccchhhhhhhhhHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018954 133 QDSDSFSIFSSRALVSEKEIEE-LVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLA 200 (348)
Q Consensus 133 q~~en~s~~~s~~~~~~kd~eE-l~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~ql 200 (348)
.|.+++.|.++-...-+|+.++ +..|.+++++|+.-+.+|-..++++..-.+++. |-|+-+-+
T Consensus 66 ~d~~kVlVdIGTGy~VEK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~-----~~~~~~~~ 129 (130)
T PRK01203 66 KKDKDLIVPIGSGVYIAEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY-----ITEATRNV 129 (130)
T ss_pred cCCCeEEEEcCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhccC
No 408
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=30.73 E-value=4.1e+02 Score=24.04 Aligned_cols=88 Identities=17% Similarity=0.221 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-------------------H-----------------HHHHHHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQ-------------------V-----------------NAVHLKL 193 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~e-------------------m-----------------~a~~akv 193 (348)
--..++..|+.++..|..-+.|=+..+.+++..+.. + ..+.+.+
T Consensus 17 ~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGsg~~ae~~~~eAi 96 (145)
T COG1730 17 ILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGSGYYAEKSADEAI 96 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCCceeeeecHHHHH
Confidence 345789999999999999999999999999888511 0 1345667
Q ss_pred HHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHH
Q 018954 194 DELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMT 237 (348)
Q Consensus 194 DELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~t 237 (348)
+-|++.+.+=+..++.+|..|.+.-......+.-+.+++-+.+.
T Consensus 97 e~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~ 140 (145)
T COG1730 97 EFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAA 140 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777766666666666666665555443
No 409
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=30.71 E-value=7.6e+02 Score=27.19 Aligned_cols=57 Identities=19% Similarity=0.231 Sum_probs=45.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 018954 148 SEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKD 204 (348)
Q Consensus 148 ~~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe 204 (348)
-.+-++..-+|.++|+.+++.-.==+.-|-+...+..++..+.+.+|++........
T Consensus 318 l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~ 374 (570)
T COG4477 318 LEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQE 374 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 347788889999999999998777777777777777888888887777777766554
No 410
>PRK15396 murein lipoprotein; Provisional
Probab=30.70 E-value=2.6e+02 Score=22.93 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 018954 184 SQVNAVHLKLDELKR 198 (348)
Q Consensus 184 ~em~a~~akvDELr~ 198 (348)
+++..|++++|.+..
T Consensus 32 sqV~~L~~kvdql~~ 46 (78)
T PRK15396 32 SDVQTLNAKVDQLSN 46 (78)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 411
>PRK10869 recombination and repair protein; Provisional
Probab=30.64 E-value=6.8e+02 Score=26.57 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=20.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHhhhhh
Q 018954 294 DLDDVEMQRMEEAREAYITAVAMAKEK-QDEESMATAARARLHLQSF 339 (348)
Q Consensus 294 e~~~~e~ekmE~aR~aY~aAvaaAKen-p~eEsl~~aAeaR~~LQ~f 339 (348)
+.|...++++|.-... +..+.- |-. +-++-|....+++.+|+.+
T Consensus 292 ~~dp~~l~~ie~Rl~~-l~~L~r-Kyg~~~~~~~~~~~~l~~eL~~L 336 (553)
T PRK10869 292 DLDPNRLAELEQRLSK-QISLAR-KHHVSPEELPQHHQQLLEEQQQL 336 (553)
T ss_pred CCCHHHHHHHHHHHHH-HHHHHH-HhCCCHHHHHHHHHHHHHHHHHh
Confidence 4455566666643222 222221 222 3344555555555555543
No 412
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.58 E-value=1.8e+02 Score=32.76 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
.+|+.+.+.+.++.+|+ ..-...+.+..+.||.++-++-....++.+++.+...++.-+..-|.++
T Consensus 505 ~ei~~~~~~ln~~~qq~--------------~~l~~~v~~~~~~ve~l~~~L~~~~~~~~~~~s~~~~l~~~~~~~~~~~ 570 (847)
T KOG0998|consen 505 REISSLEKELNELQQQL--------------SVLEGSVKAIESQVENLQKELLDLIYEMADTRSKSTLLDDSFKVGMELF 570 (847)
T ss_pred hhHHHHHHHHhhhHHHH--------------hHHhhhhhhhhhhhhhhHhHHHHHHHHHHhhcccchhhhhhhhhhhhhh
Confidence 44555555555555555 2222233333333788888888888888888888888888887778888
Q ss_pred HHhhh
Q 018954 264 EGLIK 268 (348)
Q Consensus 264 e~it~ 268 (348)
+.+.+
T Consensus 571 ~~~~~ 575 (847)
T KOG0998|consen 571 EQLLK 575 (847)
T ss_pred hhhhh
Confidence 77653
No 413
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=30.58 E-value=8.9e+02 Score=27.92 Aligned_cols=47 Identities=19% Similarity=0.360 Sum_probs=35.9
Q ss_pred hhhHHHHHHH---HHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 221 LADKQAALEK---SQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 221 LadKqAaLEK---lewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
+.+-+||||+ |+-|+-.--+-++.++-+-+.++-+|..|+..++.|.
T Consensus 208 lkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 208 LKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4556788887 6677777777788888777788888888888777777
No 414
>PRK14139 heat shock protein GrpE; Provisional
Probab=30.43 E-value=2.6e+02 Score=26.06 Aligned_cols=42 Identities=14% Similarity=0.236 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFE-KDELLKSLESSKSQVNAVHLKLDE 195 (348)
Q Consensus 154 El~~LreQVeeLqkKL~E-KDelLkSae~~~~em~a~~akvDE 195 (348)
++..|..+|++|++++.| ||.+|+..-.+.|=..-+....++
T Consensus 33 e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~ 75 (185)
T PRK14139 33 AAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAK 75 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665 555566555544443333333333
No 415
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.39 E-value=1.7e+02 Score=28.21 Aligned_cols=59 Identities=25% Similarity=0.333 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHH
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAA---EKDSLIKST 210 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qla---eKe~likSt 210 (348)
-+|+..++.+=++|+....-|-.---.++.++.|+..+...+|.|-+||- |=..|+.++
T Consensus 48 ~eel~~~~~eEe~LKs~~q~K~~~aanL~~lr~Ql~emee~~~~llrQLPs~tEmp~Ll~dv 109 (211)
T COG3167 48 LEELEELEAEEEELKSTYQQKAIQAANLEALRAQLAEMEERFDILLRQLPSDTEMPNLLADV 109 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhCCcccchhHHHHHH
Confidence 35777888888888888888888888888888888888888888888873 333444443
No 416
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=30.05 E-value=4.9e+02 Score=27.42 Aligned_cols=101 Identities=20% Similarity=0.332 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQW 233 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlew 233 (348)
++...-+++..|+++|.+...++..++. +..++..+++++..+.+++ +-.|-..|.+.+.+|..+.-
T Consensus 77 ~l~~a~~e~~~L~~eL~~~~~~l~~L~~----L~~i~~~l~~~~~al~~~~---------~~~Aa~~L~~~~~~L~~l~~ 143 (593)
T PF06248_consen 77 QLRDAAEELQELKRELEENEQLLEVLEQ----LQEIDELLEEVEEALKEGN---------YLDAADLLEELKSLLDDLKS 143 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHHHhcCc
Confidence 3333444444555555555555444432 2344444444444444433 22344445555555554411
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhHH-HHHHHHHHhh
Q 018954 234 EAMTVSRKAEKLQEEVESMQGEMS-SFMQIFEGLI 267 (348)
Q Consensus 234 Ea~tsn~Kve~LQ~dl~sm~~EIs-slm~~fe~it 267 (348)
.--..-+=..-|..++..+...|. .|...|+++.
T Consensus 144 ~~~~~~~i~~~Lk~e~~~lr~~L~~~L~~~w~~lv 178 (593)
T PF06248_consen 144 SKFEELKILKLLKDEYSELRENLQYQLSEEWERLV 178 (593)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence 111111222334444445544444 5555566544
No 417
>PRK14011 prefoldin subunit alpha; Provisional
Probab=29.83 E-value=4.1e+02 Score=23.79 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQL 214 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QL 214 (348)
.++..+.+.++.|..-+.++..-+..++..|
T Consensus 95 ~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L 125 (144)
T PRK14011 95 KSVEELDKTKKEGNKKIEELNKEITKLRKEL 125 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555666655555555544
No 418
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=29.75 E-value=3.1e+02 Score=31.87 Aligned_cols=86 Identities=23% Similarity=0.299 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHH-------HHHhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhHHH-----HHHHh---
Q 018954 151 EIEELVALREQVEDLQ-------RKMFEKDELLKSL----ESSKSQVNAVHLKLDELKRLAAEKDSL-----IKSTQ--- 211 (348)
Q Consensus 151 d~eEl~~LreQVeeLq-------kKL~EKDelLkSa----e~~~~em~a~~akvDELr~qlaeKe~l-----ikStq--- 211 (348)
-..||..|+++++.+. -.+..+|+-++-. ..+..+..++.+++.+|+.+.+..... .+-.+
T Consensus 147 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (1123)
T PRK11448 147 LQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKEITDQAA 226 (1123)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 4455666666654322 2233455555433 234456666667777666665443332 11111
Q ss_pred --HHhhHHHHhhhhHHHHHHHHHHHHHH
Q 018954 212 --LQLSDAKIKLADKQAALEKSQWEAMT 237 (348)
Q Consensus 212 --~QLsdaki~LadKqAaLEKlewEa~t 237 (348)
..|++++.. .=--.+|...=|++.+
T Consensus 227 ~~~~~~E~~tr-~~Id~~L~~aGW~~~~ 253 (1123)
T PRK11448 227 KRLELSEEETR-ILIDQQLRKAGWEADS 253 (1123)
T ss_pred ccccCCHHHHH-HHHHHHHHHCCCCCCC
Confidence 245565554 2233456667788765
No 419
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=29.72 E-value=2.6e+02 Score=28.57 Aligned_cols=16 Identities=13% Similarity=0.266 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 018954 180 ESSKSQVNAVHLKLDE 195 (348)
Q Consensus 180 e~~~~em~a~~akvDE 195 (348)
+.+..+-|.+-++|..
T Consensus 47 ~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 47 EELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 420
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=29.71 E-value=5.7e+02 Score=25.45 Aligned_cols=18 Identities=28% Similarity=0.248 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHhhhhhhH
Q 018954 239 SRKAEKLQEEVESMQGEM 256 (348)
Q Consensus 239 n~Kve~LQ~dl~sm~~EI 256 (348)
++|+..|+.+|-.+++|+
T Consensus 164 s~kl~~LeqELvraEae~ 181 (271)
T PF13805_consen 164 SPKLVVLEQELVRAEAEN 181 (271)
T ss_dssp TTTHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHh
Confidence 445555555554444443
No 421
>PRK14163 heat shock protein GrpE; Provisional
Probab=29.54 E-value=3.8e+02 Score=25.67 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFE-KDELLKSLESSK 183 (348)
Q Consensus 154 El~~LreQVeeLqkKL~E-KDelLkSae~~~ 183 (348)
+...|.++|+.|++++.+ ||.+|+..-.+.
T Consensus 41 ~~~~l~~~l~~l~~e~~el~d~~lR~~AEfe 71 (214)
T PRK14163 41 ATAGLTAQLDQVRTALGERTADLQRLQAEYQ 71 (214)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888877776 455555443333
No 422
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=29.49 E-value=5.3e+02 Score=24.99 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH
Q 018954 158 LREQVEDLQRKMFEKDELLKSLESS 182 (348)
Q Consensus 158 LreQVeeLqkKL~EKDelLkSae~~ 182 (348)
+.++++++..+|.--..+++.+.++
T Consensus 170 f~~~~~~l~~~l~~l~~a~~~l~~S 194 (370)
T PF02181_consen 170 FEEQLEELKEKLEKLEAACEELRES 194 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4466677777777777777777666
No 423
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=29.49 E-value=5.1e+02 Score=27.15 Aligned_cols=65 Identities=28% Similarity=0.243 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----hHHhhHHHHhhhhHHHH
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKST----QLQLSDAKIKLADKQAA 227 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likSt----q~QLsdaki~LadKqAa 227 (348)
+||-..|+-|+++|++.--||+| ..-+|.++++|--++++.+ |.-+.+.+-||.-+|+.
T Consensus 140 ~EEn~~lqlqL~~l~~e~~Ekee-----------------esq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~y 202 (401)
T PF06785_consen 140 REENQCLQLQLDALQQECGEKEE-----------------ESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAY 202 (401)
T ss_pred HHHHHHHHHhHHHHHHHHhHhHH-----------------HHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHH
Confidence 44555555555555555555554 3344555555555555544 44466788899999999
Q ss_pred HHHHHH
Q 018954 228 LEKSQW 233 (348)
Q Consensus 228 LEKlew 233 (348)
+-|||.
T Consensus 203 I~~LEs 208 (401)
T PF06785_consen 203 IGKLES 208 (401)
T ss_pred HHHHHH
Confidence 998874
No 424
>PHA01750 hypothetical protein
Probab=29.41 E-value=1.5e+02 Score=24.40 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=13.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHH
Q 018954 145 ALVSEKEIEELVALREQVEDLQRK 168 (348)
Q Consensus 145 ~~~~~kd~eEl~~LreQVeeLqkK 168 (348)
+...+-...||-.|+-||++++.|
T Consensus 34 dAvkeIV~~ELdNL~~ei~~~kik 57 (75)
T PHA01750 34 DAVKEIVNSELDNLKTEIEELKIK 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555666666666666544
No 425
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=29.32 E-value=4.3e+02 Score=23.93 Aligned_cols=23 Identities=17% Similarity=0.393 Sum_probs=9.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHH
Q 018954 243 EKLQEEVESMQGEMSSFMQIFEG 265 (348)
Q Consensus 243 e~LQ~dl~sm~~EIsslm~~fe~ 265 (348)
..++.-+....++|..|...++.
T Consensus 152 ~~l~~~l~~~~g~I~~L~~~I~~ 174 (184)
T PF05791_consen 152 DELQSILAGENGDIPQLQKQIEN 174 (184)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHhcccCCHHHHHHHHHH
Confidence 33444444444444444444433
No 426
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=29.16 E-value=4.6e+02 Score=27.64 Aligned_cols=102 Identities=13% Similarity=0.232 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHH
Q 018954 160 EQVEDLQRKMFEKDELLKSL----ESSKSQVNAVHLKLDELKRL--AAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQW 233 (348)
Q Consensus 160 eQVeeLqkKL~EKDelLkSa----e~~~~em~a~~akvDELr~q--laeKe~likStq~QLsdaki~LadKqAaLEKlew 233 (348)
+.|++|-....+ +.++-| +....++.+++..|-+.|.. +-+=+.-+.++...+..-+..|+++++-|..|..
T Consensus 230 ~~VN~Ls~rar~--D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~ 307 (434)
T PRK15178 230 QHVNTVSARMQK--ERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMV 307 (434)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555544433 233322 33345555555555555432 3344444455555555555666666666665555
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 234 EAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 234 Ea~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
-+--.+-.|-.|+..+..++.+|...+..+
T Consensus 308 ~~~p~sPqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 308 NGLDQNPLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred hcCCCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 455667888888888888888888777654
No 427
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=28.90 E-value=5.6e+02 Score=25.10 Aligned_cols=59 Identities=34% Similarity=0.392 Sum_probs=43.2
Q ss_pred HHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhh------h---HHHHHH----HHHhhhhhhHHHHHHHHHHhh
Q 018954 208 KSTQLQLSDAKIKLADKQAALEKSQWEAMTVS------R---KAEKLQ----EEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 208 kStq~QLsdaki~LadKqAaLEKlewEa~tsn------~---Kve~LQ----~dl~sm~~EIsslm~~fe~it 267 (348)
.-+|.||-.|-..+.+|+..||.+|.-++..- + =|.-|+ +++ +|=.||+-|+.+.+.|+
T Consensus 150 ~~~~~~ldsa~~dvn~k~~~lEe~ek~alR~aLiEER~Rfc~Fvs~l~pVl~~e~-~ml~E~~hl~~~~~~l~ 221 (231)
T cd07643 150 GDLQPQLDSAMQDVNDKYLLLEETEKKAVRNALIEERGRFCTFVSFLKPVLDEEI-SMLGEVTHLQTIMEDLA 221 (231)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHhhHHHHHHHHHHHH
Confidence 56889999999999999999999998765321 1 122222 233 57788999988888887
No 428
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.77 E-value=2.6e+02 Score=22.49 Aligned_cols=6 Identities=33% Similarity=0.584 Sum_probs=2.2
Q ss_pred HHHHHH
Q 018954 224 KQAALE 229 (348)
Q Consensus 224 KqAaLE 229 (348)
|++.|.
T Consensus 71 k~~~L~ 76 (83)
T PF07544_consen 71 KREVLQ 76 (83)
T ss_pred HHHHHH
Confidence 333333
No 429
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=28.75 E-value=94 Score=26.10 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhh
Q 018954 305 EAREAYITAVAMAKEKQDEESMATAARARLHLQ 337 (348)
Q Consensus 305 ~aR~aY~aAvaaAKenp~eEsl~~aAeaR~~LQ 337 (348)
.||..|+.||..||+.--++.=....+|+..|.
T Consensus 16 ~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~l~ 48 (99)
T TIGR00823 16 DARSKALEALKAAKAGDFAKARALVEQAGMCLN 48 (99)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 589999999999999988877777777776553
No 430
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=28.46 E-value=3.1e+02 Score=25.36 Aligned_cols=77 Identities=10% Similarity=0.157 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhh
Q 018954 179 LESSKSQVNAVHLKLDELKRLAAEKDSLIK----STQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQG 254 (348)
Q Consensus 179 ae~~~~em~a~~akvDELr~qlaeKe~lik----Stq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~ 254 (348)
-+.+.+++--+...+..++.++..|+.-.+ +...-++.-+-.|-+.=..+-.+-+-...--.-. .-||+.|..
T Consensus 97 N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~T---erdL~~~r~ 173 (182)
T PF15035_consen 97 NEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTAT---ERDLSDMRA 173 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHH
Confidence 344556666666666666666666655443 2233344444444443333333333221111111 246777777
Q ss_pred hHHH
Q 018954 255 EMSS 258 (348)
Q Consensus 255 EIss 258 (348)
||+.
T Consensus 174 e~~r 177 (182)
T PF15035_consen 174 EFAR 177 (182)
T ss_pred HHHH
Confidence 7664
No 431
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=28.35 E-value=1.1e+02 Score=28.15 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=28.6
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHH
Q 018954 214 LSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQ 246 (348)
Q Consensus 214 Lsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ 246 (348)
+-+.-+.||..+.++..|.-|+.+++.+|+-|.
T Consensus 138 ~l~~li~lA~~e~~~~~L~~ei~kT~RRVNALE 170 (204)
T PRK00373 138 LLEKILELAEVEKTIQLLADEIEKTKRRVNALE 170 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445568899999999999999999999999654
No 432
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=28.06 E-value=5.1e+02 Score=28.27 Aligned_cols=87 Identities=24% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH---HHhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHH
Q 018954 155 LVALREQVEDLQR---KMFEKDELLKSLESSK--SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALE 229 (348)
Q Consensus 155 l~~LreQVeeLqk---KL~EKDelLkSae~~~--~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLE 229 (348)
+..+++.|+.|-+ -|..|=.+.+|=-.++ ++.++.+-.|..+|.+++ .++.++|..--++--
T Consensus 414 l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa---~lLssvQ~~~e~~~~---------- 480 (531)
T PF15450_consen 414 LKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELA---TLLSSVQLLKEDNPG---------- 480 (531)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCChh----------
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhhhc
Q 018954 230 KSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKN 269 (348)
Q Consensus 230 KlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it~N 269 (348)
+|...+|++|+ -..+|.+=..|..|
T Consensus 481 ----------rkiaeiqg~l~-----~~qi~kle~siq~n 505 (531)
T PF15450_consen 481 ----------RKIAEIQGKLA-----TNQIMKLENSIQTN 505 (531)
T ss_pred ----------hhHHHHHHHHH-----HHHHHHHHHHHHHH
No 433
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=27.88 E-value=2.9e+02 Score=21.45 Aligned_cols=24 Identities=13% Similarity=0.268 Sum_probs=8.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 244 KLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 244 ~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
+.|.+++.++.+|..|...+..+.
T Consensus 29 ~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 29 EQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344444444444444444443
No 434
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=27.85 E-value=2.8e+02 Score=21.18 Aligned_cols=56 Identities=16% Similarity=0.361 Sum_probs=29.2
Q ss_pred hhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhh-hHHHHHHHHHhhhhhhHHHHHHHHH
Q 018954 202 EKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVS-RKAEKLQEEVESMQGEMSSFMQIFE 264 (348)
Q Consensus 202 eKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn-~Kve~LQ~dl~sm~~EIsslm~~fe 264 (348)
+|..+|+-++..|.+|. ..|.+|+-||-..+ .=-..++..|.+...++..|...|+
T Consensus 22 ~r~~~i~~~e~~l~ea~-------~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAE-------ELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555555555555544 44555555554432 1223456666666666666655543
No 435
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=27.74 E-value=1.1e+02 Score=28.10 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=29.5
Q ss_pred HhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHH
Q 018954 213 QLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQ 246 (348)
Q Consensus 213 QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ 246 (348)
++-+.-|.||..+.++..|..|+.+++.+|+-|.
T Consensus 137 ~~l~~li~lA~~e~~~~~L~~eI~~T~RRVNALE 170 (209)
T TIGR00309 137 EAVELIVELAEIETTIRLLAEEIEITKRRVNALE 170 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678999999999999999999999999654
No 436
>PF14772 NYD-SP28: Sperm tail
Probab=27.55 E-value=3.4e+02 Score=22.14 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHH----HHHhhHHHHHHHhHHhhHHHHh
Q 018954 187 NAVHLKLDELKR----LAAEKDSLIKSTQLQLSDAKIK 220 (348)
Q Consensus 187 ~a~~akvDELr~----qlaeKe~likStq~QLsdaki~ 220 (348)
..|++.|+.+++ .+..|+.+|+.++.+|..+--.
T Consensus 54 ~eL~~~ie~q~~~~e~ii~~Kd~lI~~L~~eL~~~deq 91 (104)
T PF14772_consen 54 QELRKEIEEQKQACERIIDRKDALIKELQQELKEADEQ 91 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555543 4678888888888888776544
No 437
>PRK14149 heat shock protein GrpE; Provisional
Probab=27.54 E-value=2.6e+02 Score=26.30 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=23.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 018954 147 VSEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVN 187 (348)
Q Consensus 147 ~~~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~ 187 (348)
+++|+.+.+..|+.++++|+ |.+|+.+-.+.|=-.
T Consensus 37 ~~~~~~~~~~~l~~e~~elk------d~~lR~~AefEN~rK 71 (191)
T PRK14149 37 ASEKEGEIKEDFELKYKEMH------EKYLRVHADFENVKK 71 (191)
T ss_pred cccccHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 36788888999999999885 444555544444333
No 438
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=27.49 E-value=2.5e+02 Score=20.58 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESS 182 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~ 182 (348)
.+.+++..+..+...++..+..+..-+..+...
T Consensus 31 ~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~ 63 (105)
T PF00435_consen 31 SDLEELEEQLKKHKELQEEIESRQERLESLNEQ 63 (105)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 344555556666666666665555555554443
No 439
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=27.48 E-value=7.7e+02 Score=26.18 Aligned_cols=107 Identities=18% Similarity=0.266 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQW 233 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlew 233 (348)
++..|..+++.+...+.++.-.-- .....+..+...++++..+..+=.--+.++...-..|+.+|...+..|-.+.+
T Consensus 352 ~l~~l~~~~~~~~~~i~~~~~~yS---~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR 428 (560)
T PF06160_consen 352 QLKELEKRYEDLEERIEEQQVPYS---EIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKR 428 (560)
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444432211 11344444455555555555444445555555555555555555555555554
Q ss_pred HHHHh----------------hhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 234 EAMTV----------------SRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 234 Ea~ts----------------n~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
-+-.+ +..+..|..+|+...-.|..+...+
T Consensus 429 ~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l 474 (560)
T PF06160_consen 429 RLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQL 474 (560)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHH
Confidence 44333 3455555555555544444444444
No 440
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=27.46 E-value=3.4e+02 Score=26.64 Aligned_cols=12 Identities=8% Similarity=-0.017 Sum_probs=4.9
Q ss_pred hHHHHHHHHHHh
Q 018954 255 EMSSFMQIFEGL 266 (348)
Q Consensus 255 EIsslm~~fe~i 266 (348)
+.+.|+.++..+
T Consensus 133 ~~~~l~~~~~v~ 144 (378)
T TIGR01554 133 QYPSLREYVTVE 144 (378)
T ss_pred hhhhhhhhcEEE
Confidence 334444444333
No 441
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=27.40 E-value=3.5e+02 Score=22.15 Aligned_cols=16 Identities=19% Similarity=0.273 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 018954 154 ELVALREQVEDLQRKM 169 (348)
Q Consensus 154 El~~LreQVeeLqkKL 169 (348)
.+-.|+++++.|..++
T Consensus 7 ~~q~l~~~~~~l~~~~ 22 (105)
T cd00632 7 QLQQLQQQLQAYIVQR 22 (105)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555443
No 442
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.35 E-value=4.7e+02 Score=29.76 Aligned_cols=56 Identities=21% Similarity=0.174 Sum_probs=47.1
Q ss_pred HHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 212 LQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 212 ~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
-...+++-.|+|-|+++++|.-++..--.+++.-+.-|..|-.+|..|-.-=++||
T Consensus 65 N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLT 120 (793)
T KOG2180|consen 65 NSGTRGKENLADAQAAIEELFQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLT 120 (793)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHH
Confidence 45677889999999999999999999999999999999999999987655444444
No 443
>PRK00736 hypothetical protein; Provisional
Probab=27.29 E-value=2.8e+02 Score=21.77 Aligned_cols=40 Identities=13% Similarity=0.347 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018954 158 LREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLA 200 (348)
Q Consensus 158 LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~ql 200 (348)
+.+.|++|.-||.-=|..+..+ -..|..-+..||.|++++
T Consensus 3 ~e~Ri~~LE~klafqe~tie~L---n~~v~~Qq~~i~~L~~ql 42 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEEL---SDQLAEQWKTVEQMRKKL 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3455777777776666444333 333444445555555444
No 444
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=27.28 E-value=5.5e+02 Score=24.46 Aligned_cols=90 Identities=16% Similarity=0.113 Sum_probs=43.2
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHhhhcCCCCCCCCCCCCCccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCH
Q 018954 244 KLQEEVESMQGEMSSFMQIFEGLIKNDSTVNADDDYDIKPYYSDYLSDIDDLDDVEMQRMEEAREAYITAVAMAKEKQDE 323 (348)
Q Consensus 244 ~LQ~dl~sm~~EIsslm~~fe~it~N~S~~~~ded~d~~~~~~e~l~~~de~~~~e~ekmE~aR~aY~aAvaaAKenp~e 323 (348)
+..-+.+.|......|...|...+...-...- .-.|.++.. ...+.-+...-+..+.+=. .-+=-+.+-.
T Consensus 120 ~~~~e~e~~~~q~~~~~~rl~~~~~~ql~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~e~~~~ 189 (212)
T COG3599 120 KIAQELEDLKRQAQVERQRLRSDIEAQLASAK-------QEDWDEILR-STVDEVEAANEEAERLADA--AQADADRLRD 189 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------chhHHHHHh-hhhHHHHHHHHHHhhcccc--cccchhhhhh
Confidence 55667777777777777777665533211111 111222221 2223322222222222111 1111122336
Q ss_pred HHHHHHHHHHHhhhhhhhhc
Q 018954 324 ESMATAARARLHLQSFVFRN 343 (348)
Q Consensus 324 Esl~~aAeaR~~LQ~fvl~~ 343 (348)
+++..+..-+..|+.+|=.+
T Consensus 190 e~~~~~~~~l~e~e~~~s~t 209 (212)
T COG3599 190 ECDIYVDTKLAELETRLSGT 209 (212)
T ss_pred hhHHHHHHHHHHHHHHHhhh
Confidence 78888888888888777443
No 445
>PRK14151 heat shock protein GrpE; Provisional
Probab=27.26 E-value=2.5e+02 Score=25.79 Aligned_cols=54 Identities=20% Similarity=0.275 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhHHh
Q 018954 150 KEIEELVALREQVEDLQRKMFE-KDELLKSLESSKSQVNAVHLKLDELKRLA-AEKDSLIKSTQLQL 214 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~E-KDelLkSae~~~~em~a~~akvDELr~ql-aeKe~likStq~QL 214 (348)
...++...|.++|++|++++.| ||.+|+ +.|.++-.|+.. .|++...+.....+
T Consensus 17 ~~~~~~~~l~~~i~~le~e~~el~d~~lR-----------~~Ae~eN~rkR~~kE~e~~~~~a~~~~ 72 (176)
T PRK14151 17 AEAAAGDDLTARVQELEEQLAAAKDQSLR-----------AAADLQNVRRRAEQDVEKAHKFALEKF 72 (176)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666554 344444 344444444332 34555555544443
No 446
>PRK12705 hypothetical protein; Provisional
Probab=27.20 E-value=8e+02 Score=26.33 Aligned_cols=90 Identities=13% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHH
Q 018954 166 QRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKL 245 (348)
Q Consensus 166 qkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~L 245 (348)
+..|.-|+++++.-.....+++....++......+..|+..+..-...|...+..|..+...|+..+-++-....+...-
T Consensus 52 ~~~~~~~~~~~~~~~~~e~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 131 (508)
T PRK12705 52 AALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNE 131 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhh
Q 018954 246 QEEVESMQGE 255 (348)
Q Consensus 246 Q~dl~sm~~E 255 (348)
=+.++.|-.|
T Consensus 132 Le~ia~lt~~ 141 (508)
T PRK12705 132 LYRVAGLTPE 141 (508)
T ss_pred HHHHhCCCHH
No 447
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=26.97 E-value=6.7e+02 Score=25.32 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=13.4
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhHHHHHH
Q 018954 233 WEAMTVSRKAEKLQEEVESMQGEMSSFMQ 261 (348)
Q Consensus 233 wEa~tsn~Kve~LQ~dl~sm~~EIsslm~ 261 (348)
-||..=..=+..|+..|..-+..+..|..
T Consensus 324 ~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~ 352 (384)
T PF03148_consen 324 EEVKELRESIEALQEKLDEAEASLQKLER 352 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 448
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=26.75 E-value=5.4e+02 Score=24.18 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 018954 155 LVALREQVEDLQ 166 (348)
Q Consensus 155 l~~LreQVeeLq 166 (348)
+..++.++..++
T Consensus 82 l~~a~a~l~~~~ 93 (334)
T TIGR00998 82 LAKAEANLAALV 93 (334)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 449
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=26.74 E-value=1.7e+02 Score=30.97 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHH
Q 018954 155 LVALREQVEDLQRKMFEKDELLK 177 (348)
Q Consensus 155 l~~LreQVeeLqkKL~EKDelLk 177 (348)
+..|.++|+.|..++.+-++.|-
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~ 592 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVA 592 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555555555555544443
No 450
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=26.64 E-value=5e+02 Score=26.63 Aligned_cols=99 Identities=17% Similarity=0.206 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHH
Q 018954 158 LREQVEDLQRKMFEKD--ELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEA 235 (348)
Q Consensus 158 LreQVeeLqkKL~EKD--elLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa 235 (348)
+|+-.+..++.+.-+- ..+..+-.+-.+...+..++|.||.+..+--.-|+. ++..-. ..+.+--|+
T Consensus 7 ir~n~~~v~~~l~~R~~~~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~-------~~~~~~----~~~~l~~~~ 75 (425)
T PRK05431 7 IRENPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQ-------AKRKGE----DAEALIAEV 75 (425)
T ss_pred HHhCHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhcCC----cHHHHHHHH
Confidence 4444444444444441 113333333455555555666666554443333321 111101 133444466
Q ss_pred HHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 236 MTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 236 ~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
..-..++..|...+..++.+|..++..+=+|.
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~ 107 (425)
T PRK05431 76 KELKEEIKALEAELDELEAELEELLLRIPNLP 107 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 66667777777788888888877777776665
No 451
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=26.62 E-value=3.7e+02 Score=22.17 Aligned_cols=61 Identities=13% Similarity=0.266 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQL 214 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QL 214 (348)
.-..+..-+.+|.+.+-..++.-..+.....++..+..+|.+|-.-+..=|.+++.+...+
T Consensus 36 kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 36 KYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666677777777777777777777778888888888888877777777777665443
No 452
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=26.61 E-value=7e+02 Score=25.43 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHH
Q 018954 179 LESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSS 258 (348)
Q Consensus 179 ae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIss 258 (348)
....+.++..++..|..-.-.+.-||.+ ++.||...-..+...++.|.+++-...+.+.-|..+..+|..+-.++..
T Consensus 236 ~~~~~~~L~kl~~~i~~~lekI~sREk~---iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~ 312 (359)
T PF10498_consen 236 LPETKSQLDKLQQDISKTLEKIESREKY---INNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQ 312 (359)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666666666654 4567777777777777777777777777766666555555544444433
No 453
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=26.56 E-value=1.1e+02 Score=25.62 Aligned_cols=32 Identities=28% Similarity=0.200 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 018954 305 EAREAYITAVAMAKEKQDEESMATAARARLHL 336 (348)
Q Consensus 305 ~aR~aY~aAvaaAKenp~eEsl~~aAeaR~~L 336 (348)
.||..|+.|+..||+.--++.=....+|+..|
T Consensus 14 ~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~l 45 (97)
T cd00215 14 NARSKALEALKAAKEGDFAEAEELLEEANDSL 45 (97)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 68999999999999998887777777776654
No 454
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.25 E-value=3e+02 Score=27.75 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhHHhhHHHHh
Q 018954 190 HLKLDELKRLAAEKDSLIKSTQLQLSDAKIK 220 (348)
Q Consensus 190 ~akvDELr~qlaeKe~likStq~QLsdaki~ 220 (348)
...|--|++.|++||-+|=.---|+++-|-+
T Consensus 231 keeia~Lkk~L~qkdq~ileKdkqisnLKad 261 (305)
T KOG3990|consen 231 KEEIARLKKLLHQKDQLILEKDKQISNLKAD 261 (305)
T ss_pred HHHHHHHHHHHhhhHHHHHhhhhhhhccCcc
Confidence 3455667778888888887777777777654
No 455
>PRK04406 hypothetical protein; Provisional
Probab=26.19 E-value=3.5e+02 Score=21.76 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=5.9
Q ss_pred HhhhhhhHHHHHHHH
Q 018954 249 VESMQGEMSSFMQIF 263 (348)
Q Consensus 249 l~sm~~EIsslm~~f 263 (348)
++.++.++..|...+
T Consensus 41 I~~L~~ql~~L~~rl 55 (75)
T PRK04406 41 ITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444443333
No 456
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=26.10 E-value=22 Score=37.59 Aligned_cols=77 Identities=29% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHHHHHHHhHHhhH----HHHhhhh
Q 018954 153 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNA-----VHLKLDELKRLAAEKDSLIKSTQLQLSD----AKIKLAD 223 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a-----~~akvDELr~qlaeKe~likStq~QLsd----aki~Lad 223 (348)
+||..|+|.+.-+.+||.|=|.=|.+=|+--+.|-. |..-=+.||+|--|||+.||++=.-|-- -+..-++
T Consensus 376 qEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELrre~~~ 455 (495)
T PF12004_consen 376 QEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELRREHAE 455 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhhhhHHH
Confidence 589999999999999999988888777765444422 2223356889999999999998766632 2333345
Q ss_pred HHHHHH
Q 018954 224 KQAALE 229 (348)
Q Consensus 224 KqAaLE 229 (348)
|||+|+
T Consensus 456 m~~~~~ 461 (495)
T PF12004_consen 456 MQAVLD 461 (495)
T ss_dssp ------
T ss_pred Hhcccc
Confidence 666664
No 457
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=26.02 E-value=1.8e+02 Score=26.40 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=30.6
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 231 SQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 231 lewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
||-+=+.-..-|++|..+++.|.-|...++..|++|.
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556789999999999999999999999987
No 458
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=26.01 E-value=8.6e+02 Score=26.27 Aligned_cols=108 Identities=31% Similarity=0.323 Sum_probs=65.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---------------HHHHHHHH-HHHHHHHH--------HHHh
Q 018954 147 VSEKEIEELVALREQVEDLQRKMFEKDELLKSLESS---------------KSQVNAVH-LKLDELKR--------LAAE 202 (348)
Q Consensus 147 ~~~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~---------------~~em~a~~-akvDELr~--------qlae 202 (348)
..+--++++-+|+.|++-..-++-.-...|+|.+.- -..|...| .+|++|++ .--|
T Consensus 292 ~~~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreE 371 (593)
T KOG4807|consen 292 GHEALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREE 371 (593)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567789999999998888876666777776543 25666554 45665554 3457
Q ss_pred hHHHHH-HHhHHhhHHHHhhhhHHHHHHHHHHHHHHhh---hHHHHH----HHHHhhhhhhHH
Q 018954 203 KDSLIK-STQLQLSDAKIKLADKQAALEKSQWEAMTVS---RKAEKL----QEEVESMQGEMS 257 (348)
Q Consensus 203 Ke~lik-Stq~QLsdaki~LadKqAaLEKlewEa~tsn---~Kve~L----Q~dl~sm~~EIs 257 (348)
||.|+- -|-.-.+ ..=|-|.|--|.|++|+-+|- .-|+-| +++|.+++-|+.
T Consensus 372 KdrLLAEETAATiS---AIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELe 431 (593)
T KOG4807|consen 372 KDRLLAEETAATIS---AIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELE 431 (593)
T ss_pred HHhhhhhhhhhhhH---HHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHH
Confidence 887753 1211111 123457777888888887653 333333 455666665543
No 459
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=25.99 E-value=7.2e+02 Score=25.35 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 018954 178 SLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 257 (348)
Q Consensus 178 Sae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIs 257 (348)
+++-..++=+-++.+++.|.+++. +.|.+|++++.....-+..+..+-.|+..-+.+.++.+.+|+.-...++
T Consensus 253 ~lekI~sREk~iN~qle~l~~eYr-------~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mt 325 (359)
T PF10498_consen 253 TLEKIESREKYINNQLEPLIQEYR-------SAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMT 325 (359)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 333334444455556666655543 4455555555555555555555555555555555555555555544444
No 460
>COG5283 Phage-related tail protein [Function unknown]
Probab=25.76 E-value=1.2e+03 Score=27.97 Aligned_cols=89 Identities=16% Similarity=0.198 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhh-------HHHHH
Q 018954 180 ESSKSQVNAVHLKLDELKR-------LAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSR-------KAEKL 245 (348)
Q Consensus 180 e~~~~em~a~~akvDELr~-------qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~-------Kve~L 245 (348)
+.++++|.+++...++.++ |+.-=|..++|+-.|+--+.+.|-.-|..+++++-++-+.|+ =.+.-
T Consensus 74 ~~~kqe~~evn~at~a~~kay~e~~~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~maaQ~~l~eqt 153 (1213)
T COG5283 74 EDLKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSMAAQARLLEQT 153 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence 4446777777766655554 455556777888888888989898889999999999988887 23344
Q ss_pred HHHHhhhhhhHHHHHHHHHHhhh
Q 018954 246 QEEVESMQGEMSSFMQIFEGLIK 268 (348)
Q Consensus 246 Q~dl~sm~~EIsslm~~fe~it~ 268 (348)
..++..+...+..+...|...++
T Consensus 154 ~n~~g~a~~~~~gl~esf~~q~~ 176 (1213)
T COG5283 154 GNKFGTADAKVVGLRESFGRQTE 176 (1213)
T ss_pred hhHHHHHHHhhhhHhHHHHHHHH
Confidence 46777888888888877766553
No 461
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=25.72 E-value=4.4e+02 Score=22.83 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 018954 154 ELVALREQVEDLQRKMF 170 (348)
Q Consensus 154 El~~LreQVeeLqkKL~ 170 (348)
|-..||.|..-|++-+.
T Consensus 6 eYsKLraQ~~vLKKaVi 22 (102)
T PF10205_consen 6 EYSKLRAQNQVLKKAVI 22 (102)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555443
No 462
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=25.65 E-value=1.1e+02 Score=26.50 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhh
Q 018954 305 EAREAYITAVAMAKEKQDEESMATAARARLHLQ 337 (348)
Q Consensus 305 ~aR~aY~aAvaaAKenp~eEsl~~aAeaR~~LQ 337 (348)
.||..|+.|+.+||+.--++.=....+|+..|.
T Consensus 30 ~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~ 62 (115)
T PRK10454 30 QARSLAYAALKQAKQGDFAAAKAMMDQSRMALN 62 (115)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 589999999999999998888888888776553
No 463
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=25.56 E-value=4.1e+02 Score=30.06 Aligned_cols=72 Identities=21% Similarity=0.269 Sum_probs=32.7
Q ss_pred HHHHHHHHHHH--hhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH
Q 018954 159 REQVEDLQRKM--FEKD-----ELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS 231 (348)
Q Consensus 159 reQVeeLqkKL--~EKD-----elLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKl 231 (348)
-..|.+|+-|| +||| +-++-.|.+..++| +.++.|+-++-.--+--.|||.-+++--+-.+++|.+-++.+
T Consensus 180 maevSeLKLkltalEkeq~e~E~K~R~se~l~qevn--~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl 257 (861)
T KOG1899|consen 180 MAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVN--QSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRL 257 (861)
T ss_pred HHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHH
Confidence 34555655554 2333 34555555556666 334444433333333334444444444444444444444443
Q ss_pred H
Q 018954 232 Q 232 (348)
Q Consensus 232 e 232 (348)
.
T Consensus 258 ~ 258 (861)
T KOG1899|consen 258 L 258 (861)
T ss_pred H
Confidence 3
No 464
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=25.48 E-value=5.6e+02 Score=23.91 Aligned_cols=68 Identities=16% Similarity=0.251 Sum_probs=49.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh
Q 018954 145 ALVSEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQL 214 (348)
Q Consensus 145 ~~~~~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QL 214 (348)
-....++|-+|..|...|++=.+.+ |.++++-+..+.++++.+.+.|++....+.+.=--+.-.+-+.
T Consensus 41 ik~aKk~rA~LNKl~k~id~~RK~i--kk~~~~P~~~Fe~~~K~l~~~i~~~~~~I~~~ik~~Ee~~k~~ 108 (215)
T PF07083_consen 41 IKDAKKDRAELNKLKKAIDDKRKEI--KKEYSKPIKEFEAKIKELIAPIDEASDKIDEQIKEFEEKEKEE 108 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446688999999999999877765 6778899999998888888888887776655433333333333
No 465
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=25.26 E-value=3.6e+02 Score=21.85 Aligned_cols=45 Identities=27% Similarity=0.375 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018954 157 ALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAA 201 (348)
Q Consensus 157 ~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qla 201 (348)
+|+.+++.|++=-.==+.+..+++.....|+.++..++.....|.
T Consensus 2 aL~kEL~~Lr~IN~~ie~~~~~L~~a~~~~~~v~~~~~~t~~LLd 46 (78)
T PF08651_consen 2 ALEKELEQLRKINPVIEGLIETLRSAKSNMNRVQETVESTNTLLD 46 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666665555567788888888999999988888776653
No 466
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=25.25 E-value=3.5e+02 Score=21.63 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLES 181 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~ 181 (348)
.--.++..+...|++|+++.++.+..++.+..
T Consensus 27 ~~~~ei~~~d~~le~l~~q~~k~~~~~~~L~~ 58 (80)
T PF11488_consen 27 SRFKEIDSKDKELEELYQQDCKTEMEVKMLET 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888889999999999998866665543
No 467
>PF14282 FlxA: FlxA-like protein
Probab=25.18 E-value=3.4e+02 Score=22.69 Aligned_cols=51 Identities=16% Similarity=0.363 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHH-H-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 018954 153 EELVALREQVEDLQR-K-MFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKD 204 (348)
Q Consensus 153 eEl~~LreQVeeLqk-K-L~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe 204 (348)
..+..|++||..|.. + |-++ .--.-+..+..+|..|++.|-.|..+.+++.
T Consensus 26 ~Qi~~Lq~ql~~l~~~~~~~~e-~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 26 KQIKQLQEQLQELSQDSDLDAE-QKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHcccCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566655555 1 2111 1123334445555555555555555555443
No 468
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=25.15 E-value=1.2e+02 Score=25.82 Aligned_cols=32 Identities=19% Similarity=0.120 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 018954 305 EAREAYITAVAMAKEKQDEESMATAARARLHL 336 (348)
Q Consensus 305 ~aR~aY~aAvaaAKenp~eEsl~~aAeaR~~L 336 (348)
.||..|+.||.+||+.--++.-....+|+..|
T Consensus 19 ~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~~l 50 (104)
T PRK09591 19 NARTEVHEAFAAMREGNFDLAEQKLNQSNEEL 50 (104)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 58999999999999998888777777777654
No 469
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=25.14 E-value=3.9e+02 Score=21.95 Aligned_cols=27 Identities=7% Similarity=-0.039 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhHHHHHHHhHHhhHHH
Q 018954 192 KLDELKRLAAEKDSLIKSTQLQLSDAK 218 (348)
Q Consensus 192 kvDELr~qlaeKe~likStq~QLsdak 218 (348)
.++.+..++..-+..+.=+..+..-|.
T Consensus 18 ~~~~k~~~~~~lE~k~~rl~~Ek~kad 44 (96)
T PF08647_consen 18 QADKKVKELTILEQKKLRLEAEKAKAD 44 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 470
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=24.98 E-value=3.5e+02 Score=28.29 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=16.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhh
Q 018954 147 VSEKEIEELVALREQVEDLQRKMFE 171 (348)
Q Consensus 147 ~~~kd~eEl~~LreQVeeLqkKL~E 171 (348)
..++=.+-+..|+.|+.+|++.|..
T Consensus 278 ~m~k~~~ki~~~~~~~~~~~~~~~~ 302 (391)
T smart00435 278 SMEKLQEKIKALKYQLKRLKKMILL 302 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555556677777777777776663
No 471
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=24.84 E-value=74 Score=24.12 Aligned_cols=14 Identities=57% Similarity=0.686 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q 018954 156 VALREQVEDLQRKM 169 (348)
Q Consensus 156 ~~LreQVeeLqkKL 169 (348)
.+|+.||+.|+.+|
T Consensus 2 ~aLrqQv~aL~~qv 15 (46)
T PF09006_consen 2 NALRQQVEALQGQV 15 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 35566666665544
No 472
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=24.83 E-value=4.6e+02 Score=22.66 Aligned_cols=71 Identities=23% Similarity=0.361 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhH
Q 018954 183 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEM 256 (348)
Q Consensus 183 ~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EI 256 (348)
..++.-|+..+++++..-.+ +.|..-.|....+++.++++-++-|.+.+-. -...|+++-|..|..-+.|+
T Consensus 42 ~~rv~GLe~AL~~v~~~Ctd-~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~--G~~~KI~K~~~KL~ea~~eL 112 (115)
T PF06476_consen 42 QHRVAGLEKALEEVKAHCTD-EGLKAERQQKIAEKQQKVAEREAELKEAQAK--GDSDKIAKRQKKLAEAKAEL 112 (115)
T ss_pred HHHHHHHHHHHHHHHhhcCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHH
Confidence 35566666666666665554 5555556666666666666666666555433 22356665555555555443
No 473
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=24.73 E-value=98 Score=29.22 Aligned_cols=45 Identities=24% Similarity=0.345 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018954 148 SEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAE 202 (348)
Q Consensus 148 ~~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlae 202 (348)
+++.+-|++.||.+|+.|.. .++....+++.|+.++.+.++++.+
T Consensus 101 ee~~~~e~~elr~~~~~l~~----------~i~~~~~~~~~L~~~l~~~~~el~~ 145 (181)
T KOG3335|consen 101 EEKRKQEIMELRLKVEKLEN----------AIAELTKFFSQLHSKLNKPESELKP 145 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHcCccccccc
No 474
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=24.73 E-value=8.3e+02 Score=25.65 Aligned_cols=170 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHh-hHHHHHHHhHHhhHHHHhhhhHHHHHHH
Q 018954 160 EQVEDLQRKMFEKDELLKSLESSKSQVN--------AVHLKLDELKRLAAE-KDSLIKSTQLQLSDAKIKLADKQAALEK 230 (348)
Q Consensus 160 eQVeeLqkKL~EKDelLkSae~~~~em~--------a~~akvDELr~qlae-Ke~likStq~QLsdaki~LadKqAaLEK 230 (348)
++++...++|...+.+...+....+-+. .+...+....+.+.. -+.-+..+...|.++.+.|.|-...|..
T Consensus 212 e~L~~e~~~L~n~e~i~~~~~~~~~~L~~~~~~~~~~~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~ 291 (563)
T TIGR00634 212 EALEAEQQRLSNLEKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQN 291 (563)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhhh-------hHHHHHHHHHHhhhcCCCCCCCCCCCCCccccCCCCCCCCCChHHHHHH
Q 018954 231 SQWEAMTVSRKAEKLQEEVESMQG-------EMSSFMQIFEGLIKNDSTVNADDDYDIKPYYSDYLSDIDDLDDVEMQRM 303 (348)
Q Consensus 231 lewEa~tsn~Kve~LQ~dl~sm~~-------EIsslm~~fe~it~N~S~~~~ded~d~~~~~~e~l~~~de~~~~e~ekm 303 (348)
.--.+=---...+.+++.+..... .+..+....+.+. -+++.+...++--+.--+++
T Consensus 292 ~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~----------------~eL~~l~~~~~~le~L~~el 355 (563)
T TIGR00634 292 YLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIK----------------EELDQLDDSDESLEALEEEV 355 (563)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH----------------HHHHHHhCCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhhhhhhhccc
Q 018954 304 EEAREAYITAVAMAKEKQDEESMATAARARLHLQSFVFRNSR 345 (348)
Q Consensus 304 E~aR~aY~aAvaaAKenp~eEsl~~aAeaR~~LQ~fvl~~~~ 345 (348)
++++..|..+-..-...--...-.+....-.+|+.|-+...+
T Consensus 356 ~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~L~m~~~~ 397 (563)
T TIGR00634 356 DKLEEELDKAAVALSLIRRKAAERLAKRVEQELKALAMEKAE 397 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcE
No 475
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=24.36 E-value=4e+02 Score=21.86 Aligned_cols=84 Identities=17% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH-----------HHHHHHHhhhHHHHHHHHHhhhh
Q 018954 185 QVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEK-----------SQWEAMTVSRKAEKLQEEVESMQ 253 (348)
Q Consensus 185 em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEK-----------lewEa~tsn~Kve~LQ~dl~sm~ 253 (348)
+|-.++..|+.-+.++..++..+.--.-+|..+...|.+--....+ ..+.+..-.+.......++..+.
T Consensus 8 e~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~ 87 (126)
T PF13863_consen 8 EMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLK 87 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHhhh
Q 018954 254 GEMSSFMQIFEGLIK 268 (348)
Q Consensus 254 ~EIsslm~~fe~it~ 268 (348)
.+|+.+.....++.+
T Consensus 88 ~~l~~l~~~~~k~e~ 102 (126)
T PF13863_consen 88 AELEELKSEISKLEE 102 (126)
T ss_pred HHHHHHHHHHHHHHH
No 476
>PRK14147 heat shock protein GrpE; Provisional
Probab=24.33 E-value=3.2e+02 Score=25.01 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVH 190 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~ 190 (348)
++..|++++++| ||.+|+..-.+.|--.-+.
T Consensus 26 ~l~~l~~e~~el------kd~~lR~~Ad~eN~rkR~~ 56 (172)
T PRK14147 26 EVESLRSEIALV------KADALRERADLENQRKRIA 56 (172)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 445555555554 3444554444444333333
No 477
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=24.31 E-value=3.7e+02 Score=24.75 Aligned_cols=39 Identities=31% Similarity=0.375 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhH
Q 018954 178 SLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSD 216 (348)
Q Consensus 178 Sae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsd 216 (348)
-.+.+..+.+.+.++|++|...++.|.--|-|-|+==|-
T Consensus 86 R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr 124 (175)
T PRK13182 86 DFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHR 124 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhH
Confidence 345667778888888888888888888888887764443
No 478
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=24.26 E-value=5.8e+02 Score=23.67 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=25.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 218 KIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 218 ki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
...|.+-++.|.-++--+-.-|.+...++.-.+..+..|+..+...+.|.
T Consensus 84 eq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~ 133 (240)
T PF12795_consen 84 EQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIR 133 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455555555555555555555555555555
No 479
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=24.16 E-value=5.1e+02 Score=22.96 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 240 RKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 240 ~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
..|..+++|++...++|.++...|+.|.
T Consensus 89 ~eV~~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 89 DEVTEVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4567777777778888777777776654
No 480
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=24.15 E-value=3.9e+02 Score=22.19 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Q 018954 158 LREQVEDLQRKMFEKDELLKSLESSK 183 (348)
Q Consensus 158 LreQVeeLqkKL~EKDelLkSae~~~ 183 (348)
|-+|..+|++||..|++=+.-+.+.+
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv 28 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILV 28 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 55788888888888887555444443
No 481
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=24.10 E-value=2.4e+02 Score=22.07 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhh
Q 018954 173 DELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLAD 223 (348)
Q Consensus 173 DelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~Lad 223 (348)
++++..++..+++|..=.-.+|+.-..+.+=-.|++..+..|.+|+.++..
T Consensus 4 Ee~l~~Le~Iv~~LE~~~l~Leesl~lyeeG~~L~k~c~~~L~~ae~kv~~ 54 (67)
T TIGR01280 4 EEALSELEQIVQKLESGDLALEEALNLFERGMALARRCEKKLAQAEQRVRK 54 (67)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888888888888889999999999999999999999998876543
No 482
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=24.08 E-value=5.9e+02 Score=23.68 Aligned_cols=63 Identities=14% Similarity=0.263 Sum_probs=47.4
Q ss_pred hhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh-HHHHHHHHHHhh
Q 018954 202 EKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGE-MSSFMQIFEGLI 267 (348)
Q Consensus 202 eKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~E-Isslm~~fe~it 267 (348)
+|.+||+--|.+.|+. ....++-.+.|+|+.....++..+++.-+..+... ......+.+.+.
T Consensus 25 D~~S~~rwk~~~~~e~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 88 (177)
T PF03234_consen 25 DKRSLFRWKHQARHER---REERKQEIEELKYERKINEKLLKRIQKLLSALDKEEEADKQEVMESLN 88 (177)
T ss_pred ChHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHh
Confidence 6788998888887764 45567788889999999999999999999888876 223344444444
No 483
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=23.79 E-value=4.4e+02 Score=22.08 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHHHh
Q 018954 239 SRKAEKLQEEVESMQGEMSSFMQIFEGL 266 (348)
Q Consensus 239 n~Kve~LQ~dl~sm~~EIsslm~~fe~i 266 (348)
.+-+.+|+..|..|.++|..+-..++.|
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445555555555555555555555443
No 484
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=23.27 E-value=2.4e+02 Score=22.82 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=27.6
Q ss_pred CCCccccchhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 018954 135 SDSFSIFSSRALVSEKEIEELVALREQVEDLQRKMFEKDELLKSLESS 182 (348)
Q Consensus 135 ~en~s~~~s~~~~~~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~ 182 (348)
|.||-+-.+..-|.+--..-+..|+++++.|++++.+...-+..++..
T Consensus 66 G~~~~vE~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 113 (120)
T PF02996_consen 66 GAGYYVEMSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQT 113 (120)
T ss_dssp ETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred eCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555556666777777776666655554444443
No 485
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=23.23 E-value=1.9e+02 Score=23.25 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhh
Q 018954 173 DELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLA 222 (348)
Q Consensus 173 DelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~La 222 (348)
++++..++..+++|..=.-.||+.-..+.+=-.|++..+..|.+|+.++.
T Consensus 9 Ee~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L~k~c~~~L~~ae~kv~ 58 (75)
T PRK14064 9 EEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAEKRMA 58 (75)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888888899999999999999999999998876653
No 486
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=23.11 E-value=1.1e+03 Score=26.35 Aligned_cols=24 Identities=4% Similarity=0.368 Sum_probs=13.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHH
Q 018954 242 AEKLQEEVESMQGEMSSFMQIFEG 265 (348)
Q Consensus 242 ve~LQ~dl~sm~~EIsslm~~fe~ 265 (348)
++.+++.+..|+.-|..+....+.
T Consensus 641 L~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 641 LERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666655555543
No 487
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=23.02 E-value=2.3e+02 Score=25.87 Aligned_cols=42 Identities=21% Similarity=0.348 Sum_probs=33.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHhh
Q 018954 162 VEDLQRKMFEKDELLKSLESSK----------------------SQVNAVHLKLDELKRLAAEK 203 (348)
Q Consensus 162 VeeLqkKL~EKDelLkSae~~~----------------------~em~a~~akvDELr~qlaeK 203 (348)
.|.=..+|+.-+++.+...... .++..++.-||+||.+++++
T Consensus 82 ~e~e~g~Lipa~eV~~~~s~~~Kav~q~LetlPD~LERd~gL~p~~v~~vQ~~iD~lR~~l~~~ 145 (152)
T PF07278_consen 82 FEKETGQLIPAEEVRREMSEMAKAVVQVLETLPDILERDAGLPPEQVARVQSVIDDLRDQLAER 145 (152)
T ss_pred HHHHHcccCcHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444677888888888777663 78899999999999988865
No 488
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=22.97 E-value=3.7e+02 Score=22.72 Aligned_cols=37 Identities=14% Similarity=0.364 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHH
Q 018954 226 AALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQI 262 (348)
Q Consensus 226 AaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~ 262 (348)
.-+.+|+.++..-..-++.|+..++.+..|-..|-.+
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~l 85 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTEREEKQELLKL 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555666666666665555544443
No 489
>KOG4324 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.91 E-value=3.9e+02 Score=28.65 Aligned_cols=102 Identities=23% Similarity=0.340 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHhHHhh
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKS-------------LESSKSQVNAVHLKLDELKRLAAEKDS---LIKSTQLQLS 215 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkS-------------ae~~~~em~a~~akvDELr~qlaeKe~---likStq~QLs 215 (348)
|.|-.+-.-.+..|.++|.|+|.+|-+ ++...+.-|.++..+---++.+++|+. .+--++.|++
T Consensus 106 Rke~~a~e~~~~ql~~ql~~~dt~~~s~~~ql~~Lkvmhsms~r~e~snrl~~eLsrt~t~la~kd~~~d~lS~i~~~~s 185 (476)
T KOG4324|consen 106 RKETYASEKRVNQLKKQLVEADTLLSSAQLQLDSLKVMHSMSDREEGSNRLKEELSRTQTELALKDEECDILSGIRAQLS 185 (476)
T ss_pred cccchhhhhhhhhhhHHhhhhhcccchhhhhhhHHHHHhhcchhhhhhhhhhHHHHHHHHHHhhhhhhhhhhhhhhcccc
Confidence 334445555566777777777776544 344457778888888888999999998 3333333333
Q ss_pred ------------HHHHhhh---hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 216 ------------DAKIKLA---DKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 216 ------------daki~La---dKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
+|+.|.. =+|+..||.= .+-+..++-++.||..+..++
T Consensus 186 ~e~~Elt~sLf~Ea~KmV~aA~~r~~~~ek~l----------~Esr~~i~~lqaEv~alk~lv 238 (476)
T KOG4324|consen 186 QELEELTASLFEEAHKMVRAANPRQEFIEKQL----------TESRLKIDVLQAEVNALKTLV 238 (476)
T ss_pred hhHHHHHHHHHHHHHHHhhhcccchhhhhhhh----------hHhHHHHHHHHHHHHHhHHhh
Confidence 3444431 1333333321 223455668899999888877
No 490
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.86 E-value=3.6e+02 Score=28.18 Aligned_cols=91 Identities=12% Similarity=0.187 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhh
Q 018954 161 QVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSR 240 (348)
Q Consensus 161 QVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~ 240 (348)
.+|+|+.||.+.|. +-.....+|++++.-|==||-+.-|==..+-++ |...-....|.=..-+ .
T Consensus 9 ~LeeLe~kLa~~d~---~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~I------------e~~~~~s~qeKFl~IR-~ 72 (379)
T PF11593_consen 9 KLEELEEKLASNDN---SKDSVMDKISEAQDSILPLRLQFNEFIQTMANI------------EEMNNKSPQEKFLLIR-S 72 (379)
T ss_pred cHHHHHHHHhcCCc---hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh------------hcccccCHHHHHHHHH-H
Confidence 46888888888776 444555667777777766666666532222222 1111111122222333 4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 241 KAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 241 Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
|+-+|++.+-.+-.++..|+=+|+.|.
T Consensus 73 KlleL~~~lQ~lS~df~~LqPLF~Ti~ 99 (379)
T PF11593_consen 73 KLLELYNKLQELSSDFQKLQPLFDTIP 99 (379)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHhhhH
Confidence 777899999999999999999998876
No 491
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.85 E-value=5.4e+02 Score=24.67 Aligned_cols=14 Identities=21% Similarity=0.157 Sum_probs=7.0
Q ss_pred HHHHHHH----HhhcCCH
Q 018954 310 YITAVAM----AKEKQDE 323 (348)
Q Consensus 310 Y~aAvaa----AKenp~e 323 (348)
|-.|+.+ -+.+|+.
T Consensus 159 y~~Ai~af~~fl~~yP~s 176 (263)
T PRK10803 159 QDDAIVAFQNFVKKYPDS 176 (263)
T ss_pred HHHHHHHHHHHHHHCcCC
Confidence 4445433 3456664
No 492
>PF14992 TMCO5: TMCO5 family
Probab=22.70 E-value=6.4e+02 Score=25.33 Aligned_cols=83 Identities=25% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----hHHhhHHHHhhhhHHHHHH
Q 018954 162 VEDLQRKMF--------EKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKST----QLQLSDAKIKLADKQAALE 229 (348)
Q Consensus 162 VeeLqkKL~--------EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likSt----q~QLsdaki~LadKqAaLE 229 (348)
|.+||+|+. ||.-+=.++..+++.+.-+.+-+-.+.+++++=+.=..+. ..|-++++ +|-++-.-+|
T Consensus 86 ~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~-klkE~L~rmE 164 (280)
T PF14992_consen 86 VQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIK-KLKEKLRRME 164 (280)
T ss_pred hhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_pred HHHHHHHHhhhHHHHHH
Q 018954 230 KSQWEAMTVSRKAEKLQ 246 (348)
Q Consensus 230 KlewEa~tsn~Kve~LQ 246 (348)
. +.|+.-=|+++.+-|
T Consensus 165 ~-ekE~~lLe~el~k~q 180 (280)
T PF14992_consen 165 E-EKEMLLLEKELSKYQ 180 (280)
T ss_pred H-HHHHHHHHHHHHHHh
No 493
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.61 E-value=2e+02 Score=23.48 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhh
Q 018954 173 DELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKL 221 (348)
Q Consensus 173 DelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~L 221 (348)
+++++.++..+++|..=.-.||+.-+.+.+=-.||+..+..|..|+.++
T Consensus 10 Eeal~~LEeIV~~LE~~~l~Lees~~lyeeG~~L~k~C~~~L~~ae~kI 58 (80)
T PRK14067 10 EQQLARLQEIVDALEGGDLPLEESVALYKEGLGLARACREQLAKARNEI 58 (80)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888899999999999999999999999887665
No 494
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=22.36 E-value=4.5e+02 Score=21.73 Aligned_cols=109 Identities=17% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHH
Q 018954 155 LVALREQVEDLQRKMFEKDELLKSLESS--KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQ 232 (348)
Q Consensus 155 l~~LreQVeeLqkKL~EKDelLkSae~~--~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKle 232 (348)
+..+...+.+|..=|-++++.|.+.+.. ...+.....++..+.+.+..+..-+..++..-+.---... .....+.
T Consensus 2 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~---~~~~~i~ 78 (213)
T cd00176 2 LQQFLRDADELEAWLSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGH---PDAEEIQ 78 (213)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCC---CChHHHH
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHh
Q 018954 233 WEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 266 (348)
Q Consensus 233 wEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~i 266 (348)
-.+-.-+.+-+.|...+..-...+...+.+....
T Consensus 79 ~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~ 112 (213)
T cd00176 79 ERLEELNQRWEELRELAEERRQRLEEALDLQQFF 112 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PLN02320 seryl-tRNA synthetase
Probab=22.23 E-value=5.9e+02 Score=27.33 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQW 233 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlew 233 (348)
++..+|+..+.+++.|.-+-.-+. +.++-+++.+.-++..++.+-..-...+-.++.. +..-.+.++.++
T Consensus 68 D~k~ir~n~~~v~~~l~~R~~~~~-----vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-~~~~~~~~~l~~---- 137 (502)
T PLN02320 68 DFKWIRDNKEAVAINIRNRNSNAN-----LELVLELYENMLALQKEVERLRAERNAVANKMKG-KLEPSERQALVE---- 137 (502)
T ss_pred CHHHHHhCHHHHHHHHHhcCCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCCCCHHHHHH----
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 234 EAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 234 Ea~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
|+..-..+...|..++..++.+|..++..+=+|.
T Consensus 138 ~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~ 171 (502)
T PLN02320 138 EGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMT 171 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
No 496
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=22.19 E-value=4.7e+02 Score=21.87 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 018954 189 VHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEV 249 (348)
Q Consensus 189 ~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl 249 (348)
....||.|+.+...-...|+..+.-...-+..++.-+.++++.+...-....+.++-++.+
T Consensus 23 qs~~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~i 83 (110)
T PF10828_consen 23 QSQRIDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRESI 83 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=22.07 E-value=7.4e+02 Score=24.13 Aligned_cols=79 Identities=14% Similarity=0.229 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHH----hhhHHHHHHH
Q 018954 172 KDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMT----VSRKAEKLQE 247 (348)
Q Consensus 172 KDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~t----sn~Kve~LQ~ 247 (348)
+..++..++.+...++.++.+|+.++..+. .++...=-.+...-.-|.+|--+++. ...-..+|..
T Consensus 129 r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~----------~~i~~~V~~iN~ll~~Ia~lN~~I~~~~~~~g~~~n~L~D 198 (322)
T TIGR02492 129 RQAVLESAQALANSFNQTSNELQDLRKGIN----------AEIKSAVTEINSLLKQIASLNKEIQQVEAKSGQDANDLLD 198 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHhHH
Q ss_pred HHhhhhhhHHHHH
Q 018954 248 EVESMQGEMSSFM 260 (348)
Q Consensus 248 dl~sm~~EIsslm 260 (348)
+-+.+-.|+|.++
T Consensus 199 qRD~ll~~LS~~v 211 (322)
T TIGR02492 199 QRDLLLKELSQLI 211 (322)
T ss_pred HHHHHHHHHHhHc
No 498
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=22.05 E-value=3.6e+02 Score=20.53 Aligned_cols=63 Identities=19% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 018954 192 KLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 257 (348)
Q Consensus 192 kvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIs 257 (348)
+|++|++++.-=-.++..+.-=+.-- =-|+...+..++-++..++.|++-|+..|..++....
T Consensus 2 ~i~~L~~~i~~E~ki~~Gae~m~~~~---~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~~ 64 (70)
T PF02185_consen 2 RIEELQKKIDKELKIKEGAENMLQAY---STDKKKVLSEAESQLRESNQKIELLREQLEKLQQRSQ 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---CCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
No 499
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=21.96 E-value=4.9e+02 Score=29.26 Aligned_cols=68 Identities=18% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHH---HHHHhhh
Q 018954 173 DELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQW---EAMTVSR 240 (348)
Q Consensus 173 DelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlew---Ea~tsn~ 240 (348)
.|+.+-.++-.-|+..++.|-.||..++++=.--|+-.+..+-.+|..|--..-.+|+.|. |+|..|.
T Consensus 82 ~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~ 152 (907)
T KOG2264|consen 82 REQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN 152 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
No 500
>PLN02678 seryl-tRNA synthetase
Probab=21.90 E-value=7.7e+02 Score=25.89 Aligned_cols=106 Identities=10% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHH
Q 018954 154 ELVALR----EQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALE 229 (348)
Q Consensus 154 El~~Lr----eQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLE 229 (348)
++..+| +..+...+.|.-+-.-+. .+.++..+..+.-++..++..=..-...+..|+...+..-.+..+.++
T Consensus 3 D~k~ir~~~~~~~~~v~~~l~~R~~~~~----~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~ 78 (448)
T PLN02678 3 DINLFREEKGGDPELIRESQRRRFASVE----LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIA 78 (448)
T ss_pred CHHHHhcccccCHHHHHHHHHhhCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHH
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 230 KSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 230 KlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
|+..=..++..|+.++..++.+|..++..+=+|.
T Consensus 79 ----~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~ 112 (448)
T PLN02678 79 ----ETKELKKEITEKEAEVQEAKAALDAKLKTIGNLV 112 (448)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Done!