Query 018954
Match_columns 348
No_of_seqs 26 out of 28
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 08:37:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 96.9 0.13 4.4E-06 42.6 17.5 12 156-167 9-20 (284)
2 3oja_B Anopheles plasmodium-re 96.7 0.051 1.7E-06 52.7 15.7 111 153-263 456-581 (597)
3 2dfs_A Myosin-5A; myosin-V, in 96.2 0.027 9.3E-07 61.0 11.9 109 155-267 923-1043(1080)
4 3vkg_A Dynein heavy chain, cyt 96.1 0.1 3.6E-06 62.4 16.7 107 158-267 1932-2055(3245)
5 2fxo_A Myosin heavy chain, car 95.7 0.77 2.6E-05 38.1 17.0 108 149-256 9-120 (129)
6 3tnu_B Keratin, type II cytosk 95.4 0.15 5.1E-06 42.3 10.5 53 212-264 75-127 (129)
7 3tnu_A Keratin, type I cytoske 95.2 0.17 5.8E-06 42.1 10.4 54 212-265 77-130 (131)
8 3na7_A HP0958; flagellar bioge 94.7 1.9 6.6E-05 38.9 16.8 12 258-269 176-187 (256)
9 1i84_S Smooth muscle myosin he 94.6 0.047 1.6E-06 59.0 6.9 19 153-171 857-875 (1184)
10 1i84_S Smooth muscle myosin he 94.5 0.18 6.3E-06 54.5 11.0 11 155-165 866-876 (1184)
11 3o0z_A RHO-associated protein 94.5 1.5 5.2E-05 39.0 15.1 83 183-265 68-154 (168)
12 2dfs_A Myosin-5A; myosin-V, in 93.4 1.2 4E-05 48.5 14.7 51 152-202 959-1009(1080)
13 4h22_A Leucine-rich repeat fli 92.9 0.21 7.3E-06 41.6 6.3 53 156-208 26-89 (103)
14 3o0z_A RHO-associated protein 92.4 5.7 0.00019 35.4 17.5 106 155-263 8-113 (168)
15 3na7_A HP0958; flagellar bioge 92.2 5.6 0.00019 35.9 15.3 28 184-211 46-73 (256)
16 3qh9_A Liprin-beta-2; coiled-c 92.2 1.3 4.5E-05 35.5 9.8 64 173-236 15-78 (81)
17 3nmd_A CGMP dependent protein 92.0 0.43 1.5E-05 37.5 6.7 45 162-216 21-65 (72)
18 3oja_B Anopheles plasmodium-re 91.7 3.7 0.00013 39.7 14.4 111 154-267 450-578 (597)
19 2v4h_A NF-kappa-B essential mo 91.4 2.3 7.7E-05 35.8 10.8 37 161-207 25-61 (110)
20 3vkg_A Dynein heavy chain, cyt 90.8 3.4 0.00012 50.0 15.5 117 151-267 1932-2083(3245)
21 4gkw_A Spindle assembly abnorm 90.6 3.7 0.00013 36.2 11.8 60 152-211 59-118 (167)
22 3hnw_A Uncharacterized protein 90.3 2.7 9.1E-05 35.8 10.5 97 153-249 28-133 (138)
23 3u1c_A Tropomyosin alpha-1 cha 90.1 6.2 0.00021 31.6 13.2 37 210-246 63-99 (101)
24 2k48_A Nucleoprotein; viral pr 90.1 0.85 2.9E-05 38.2 7.0 52 153-204 42-102 (107)
25 3hnw_A Uncharacterized protein 88.7 5.6 0.00019 33.8 11.3 64 152-218 67-130 (138)
26 1ic2_A Tropomyosin alpha chain 88.5 5 0.00017 30.8 10.0 75 187-268 2-76 (81)
27 2e7s_A RAB guanine nucleotide 87.8 1.1 3.8E-05 38.7 6.5 34 188-221 100-133 (135)
28 2p22_C Protein SRN2; endosome, 87.3 16 0.00054 32.7 15.5 88 180-267 75-171 (192)
29 1gk4_A Vimentin; intermediate 87.1 9 0.00031 29.7 11.0 54 212-265 26-79 (84)
30 3a7p_A Autophagy protein 16; c 87.1 4 0.00014 36.0 9.6 60 176-235 67-126 (152)
31 4fi5_A Nucleoprotein; structur 87.0 1.5 5.2E-05 37.0 6.7 56 150-205 26-90 (113)
32 2ic6_A Nucleocapsid protein; h 87.0 1.4 4.8E-05 35.1 6.1 51 153-203 12-71 (78)
33 2b9c_A Striated-muscle alpha t 86.8 14 0.00048 31.7 13.8 109 155-266 19-127 (147)
34 3mq9_A Bone marrow stromal ant 86.2 23 0.00077 33.6 15.1 31 234-264 437-467 (471)
35 3ol1_A Vimentin; structural ge 85.5 14 0.00048 30.3 12.3 63 150-222 17-79 (119)
36 3u59_A Tropomyosin beta chain; 85.1 13 0.00044 29.6 12.3 52 171-222 17-68 (101)
37 1x8y_A Lamin A/C; structural p 84.2 6.2 0.00021 30.9 8.6 15 251-265 67-81 (86)
38 2ic9_A Nucleocapsid protein; h 83.7 2.8 9.5E-05 34.6 6.6 52 153-204 12-72 (96)
39 3mov_A Lamin-B1; LMNB1, B-type 83.4 3.8 0.00013 33.0 7.2 79 184-265 12-90 (95)
40 3u59_A Tropomyosin beta chain; 82.3 17 0.00058 28.8 12.5 86 153-245 9-98 (101)
41 2pms_C Pneumococcal surface pr 81.5 3.9 0.00013 35.0 6.9 37 217-257 49-85 (125)
42 2pms_C Pneumococcal surface pr 81.4 4.1 0.00014 34.9 7.0 51 186-236 63-120 (125)
43 2v4h_A NF-kappa-B essential mo 81.2 13 0.00043 31.3 9.7 53 148-200 19-71 (110)
44 3jsv_C NF-kappa-B essential mo 78.5 17 0.00059 29.7 9.5 37 161-207 3-39 (94)
45 2e7s_A RAB guanine nucleotide 77.6 4.8 0.00016 34.8 6.3 31 236-266 99-129 (135)
46 3ghg_C Fibrinogen gamma chain; 76.6 22 0.00075 35.4 11.5 38 237-274 102-139 (411)
47 3tnu_B Keratin, type II cytosk 76.5 27 0.00092 28.6 10.4 98 149-259 3-101 (129)
48 1m1j_C Fibrinogen gamma chain; 75.7 65 0.0022 31.8 14.9 105 160-270 31-135 (409)
49 3i00_A HIP-I, huntingtin-inter 75.0 27 0.00094 29.2 10.1 51 149-199 10-62 (120)
50 3ol1_A Vimentin; structural ge 74.4 34 0.0012 28.0 14.4 81 184-264 20-107 (119)
51 3u1c_A Tropomyosin alpha-1 cha 74.4 31 0.0011 27.5 13.8 83 170-266 16-98 (101)
52 3tnu_A Keratin, type I cytoske 73.6 25 0.00087 28.9 9.5 99 149-260 5-104 (131)
53 3qh9_A Liprin-beta-2; coiled-c 73.2 19 0.00066 28.8 8.3 57 149-215 22-78 (81)
54 2v71_A Nuclear distribution pr 72.2 55 0.0019 29.4 13.1 19 153-171 10-28 (189)
55 1m1j_B Fibrinogen beta chain; 71.9 87 0.003 31.6 15.8 31 186-216 123-153 (464)
56 1fxk_C Protein (prefoldin); ar 71.7 38 0.0013 27.3 10.2 33 150-182 12-44 (133)
57 2ocy_A RAB guanine nucleotide 70.7 54 0.0019 28.7 13.4 32 235-266 110-141 (154)
58 3ghg_A Fibrinogen alpha chain; 69.4 39 0.0013 35.1 11.6 94 150-251 61-156 (562)
59 3ghg_A Fibrinogen alpha chain; 68.4 18 0.00062 37.5 8.9 35 223-257 114-148 (562)
60 3nmd_A CGMP dependent protein 66.8 18 0.00061 28.3 6.7 46 221-266 21-66 (72)
61 1gk6_A Vimentin; intermediate 65.6 23 0.00078 26.0 6.8 52 214-265 2-53 (59)
62 1m1j_C Fibrinogen gamma chain; 65.1 71 0.0024 31.6 12.2 33 150-182 35-67 (409)
63 1joc_A EEA1, early endosomal a 64.9 28 0.00095 28.7 8.0 34 169-202 3-36 (125)
64 1zxa_A CGMP-dependent protein 63.6 7.6 0.00026 30.0 4.0 22 160-181 11-32 (67)
65 3oja_A Leucine-rich immune mol 63.2 1E+02 0.0036 29.2 12.8 42 222-263 424-465 (487)
66 3fpp_A Macrolide-specific effl 62.7 23 0.00078 31.8 7.6 21 211-231 113-133 (341)
67 4dk0_A Putative MACA; alpha-ha 62.4 10 0.00035 34.4 5.3 18 212-229 115-132 (369)
68 2efr_A General control protein 62.2 80 0.0027 27.5 17.0 102 159-267 41-146 (155)
69 1l8d_A DNA double-strand break 60.9 57 0.0019 25.4 12.4 26 239-264 77-102 (112)
70 1t2k_D Cyclic-AMP-dependent tr 60.5 24 0.00084 25.6 6.1 40 224-263 20-59 (61)
71 2v66_B Nuclear distribution pr 60.3 45 0.0015 27.8 8.4 60 152-211 41-111 (111)
72 4etp_A Kinesin-like protein KA 60.0 17 0.00059 35.2 6.7 34 154-187 4-37 (403)
73 3mq9_A Bone marrow stromal ant 59.8 1.2E+02 0.004 28.7 15.1 22 227-248 444-465 (471)
74 2wt7_A Proto-oncogene protein 58.9 30 0.001 25.4 6.4 41 224-264 21-61 (63)
75 4dk0_A Putative MACA; alpha-ha 54.5 41 0.0014 30.4 7.9 17 154-170 71-87 (369)
76 2v71_A Nuclear distribution pr 54.2 1.2E+02 0.0042 27.2 15.7 20 152-171 16-35 (189)
77 2eqb_B RAB guanine nucleotide 54.0 42 0.0014 27.5 7.1 83 154-253 6-96 (97)
78 4emc_A Monopolin complex subun 53.6 28 0.00097 31.6 6.5 34 188-221 24-57 (190)
79 1ic2_A Tropomyosin alpha chain 53.5 72 0.0025 24.3 9.2 56 157-215 17-72 (81)
80 2zvf_A Alanyl-tRNA synthetase; 53.4 33 0.0011 28.4 6.6 50 154-203 8-58 (171)
81 2ocy_A RAB guanine nucleotide 53.2 1.2E+02 0.004 26.6 16.6 84 184-267 58-149 (154)
82 2nrj_A HBL B protein; enteroto 52.0 1.1E+02 0.0038 29.0 10.8 69 148-216 221-289 (346)
83 3lay_A Zinc resistance-associa 51.9 49 0.0017 29.1 7.7 45 158-202 83-131 (175)
84 3jsv_C NF-kappa-B essential mo 51.3 71 0.0024 26.1 8.0 76 192-267 3-88 (94)
85 1m1j_B Fibrinogen beta chain; 50.9 2.1E+02 0.0071 28.9 14.5 41 188-228 118-158 (464)
86 3bas_A Myosin heavy chain, str 50.8 86 0.0029 24.4 11.0 33 149-181 10-42 (89)
87 2zqm_A Prefoldin beta subunit 49.7 88 0.003 24.2 10.7 30 154-183 14-43 (117)
88 2lw1_A ABC transporter ATP-bin 48.5 44 0.0015 25.8 6.2 48 182-230 27-74 (89)
89 2lw1_A ABC transporter ATP-bin 48.3 60 0.0021 25.0 6.9 56 150-205 19-77 (89)
90 2xdj_A Uncharacterized protein 47.6 48 0.0016 26.1 6.3 33 221-253 22-54 (83)
91 2efl_A Formin-binding protein 47.6 1.4E+02 0.0049 26.0 15.7 18 303-320 188-205 (305)
92 4etp_A Kinesin-like protein KA 47.1 41 0.0014 32.6 7.1 48 184-231 3-50 (403)
93 1ci6_A Transcription factor AT 46.0 56 0.0019 24.1 6.1 41 224-264 21-61 (63)
94 1deq_A Fibrinogen (alpha chain 45.4 2.1E+02 0.007 28.6 11.6 102 147-253 61-182 (390)
95 3edu_A Beta-I spectrin, spectr 44.1 1.4E+02 0.0048 25.0 9.2 84 183-267 80-174 (218)
96 1fxk_C Protein (prefoldin); ar 43.8 34 0.0012 27.5 5.1 43 224-266 86-128 (133)
97 2eqb_B RAB guanine nucleotide 43.7 1.3E+02 0.0046 24.6 13.0 48 187-234 8-55 (97)
98 1l8d_A DNA double-strand break 43.6 1.1E+02 0.0038 23.7 9.6 13 184-196 31-43 (112)
99 1gmj_A ATPase inhibitor; coile 43.3 61 0.0021 26.0 6.3 37 158-200 38-74 (84)
100 1jcd_A Major outer membrane li 43.0 96 0.0033 22.7 7.0 24 179-202 6-29 (52)
101 3swk_A Vimentin; cytoskeleton, 42.5 1.2E+02 0.0041 23.6 10.4 39 184-222 21-59 (86)
102 2xv5_A Lamin-A/C; structural p 41.7 93 0.0032 23.9 7.0 15 251-265 44-58 (74)
103 2f1m_A Acriflavine resistance 41.5 49 0.0017 28.8 6.1 21 211-231 97-117 (277)
104 2zqm_A Prefoldin beta subunit 41.1 1.2E+02 0.0042 23.4 9.9 45 223-267 67-111 (117)
105 3ghg_B Fibrinogen beta chain; 39.9 3.1E+02 0.011 27.8 14.3 31 186-216 118-148 (461)
106 3oja_A Leucine-rich immune mol 39.6 2.5E+02 0.0086 26.5 12.2 14 302-315 464-477 (487)
107 2efr_A General control protein 38.5 2E+02 0.0067 25.0 16.0 17 156-172 73-89 (155)
108 2b5u_A Colicin E3; high resolu 38.1 3.6E+02 0.012 28.0 15.1 24 212-235 395-418 (551)
109 3swk_A Vimentin; cytoskeleton, 37.4 1.4E+02 0.0049 23.2 10.5 51 186-236 2-52 (86)
110 1jnm_A Proto-oncogene C-JUN; B 37.0 36 0.0012 24.8 3.8 36 226-261 22-57 (62)
111 1fxk_A Prefoldin; archaeal pro 36.7 1.4E+02 0.0047 22.7 10.2 23 233-255 79-101 (107)
112 1go4_E MAD1 (mitotic arrest de 36.7 1.4E+02 0.0046 24.5 7.5 18 184-201 75-92 (100)
113 2b5u_A Colicin E3; high resolu 36.6 3.8E+02 0.013 27.8 15.1 59 174-232 318-376 (551)
114 3htk_A Structural maintenance 35.9 1.1E+02 0.0039 21.5 6.7 25 186-210 7-31 (60)
115 1ci6_A Transcription factor AT 35.6 88 0.003 23.0 5.8 41 150-200 20-60 (63)
116 2efl_A Formin-binding protein 35.4 2.2E+02 0.0076 24.7 14.8 32 183-214 129-160 (305)
117 1ses_A Seryl-tRNA synthetase; 34.8 92 0.0032 30.3 7.4 53 154-208 43-95 (421)
118 1lwu_C Fibrinogen gamma chain; 34.4 97 0.0033 29.7 7.3 44 156-202 8-51 (323)
119 2c5k_T Syntaxin TLG1, T-snare 33.9 1.1E+02 0.0038 24.3 6.5 11 159-169 16-26 (95)
120 3r6n_A Desmoplakin; spectrin r 33.9 3.5E+02 0.012 26.6 13.0 114 145-273 1-123 (450)
121 3okq_A BUD site selection prot 33.1 2.4E+02 0.0083 24.5 13.2 50 181-230 25-79 (141)
122 4h22_A Leucine-rich repeat fli 32.8 2.1E+02 0.0072 23.7 9.0 33 230-262 48-80 (103)
123 3q0x_A Centriole protein; cent 32.1 1.2E+02 0.004 28.0 7.2 44 156-202 167-210 (228)
124 1jcd_A Major outer membrane li 31.6 82 0.0028 23.1 4.9 30 228-257 6-35 (52)
125 4dyl_A Tyrosine-protein kinase 31.5 3.4E+02 0.012 25.7 10.8 33 154-186 310-342 (406)
126 4emc_A Monopolin complex subun 31.0 2.5E+02 0.0087 25.4 9.0 72 196-267 11-82 (190)
127 4egx_A Kinesin-like protein KI 30.9 71 0.0024 27.8 5.3 15 195-209 9-23 (184)
128 3trt_A Vimentin; cytoskeleton, 30.6 1.6E+02 0.0055 21.7 10.0 23 191-213 35-57 (77)
129 1lwu_B Fibrinogen beta chain; 30.2 47 0.0016 31.7 4.4 12 158-169 7-18 (323)
130 4ani_A Protein GRPE; chaperone 29.3 1.3E+02 0.0043 27.4 6.9 51 152-212 58-109 (213)
131 3edu_A Beta-I spectrin, spectr 29.1 2.5E+02 0.0086 23.4 16.0 17 153-169 34-50 (218)
132 1zxa_A CGMP-dependent protein 28.8 56 0.0019 25.1 3.8 24 191-214 25-48 (67)
133 2no2_A HIP-I, huntingtin-inter 28.4 2.4E+02 0.0081 22.9 13.9 35 221-255 49-83 (107)
134 3m9b_A Proteasome-associated A 28.0 49 0.0017 31.1 4.0 36 232-267 60-95 (251)
135 1uix_A RHO-associated kinase; 27.9 2.1E+02 0.0073 22.2 9.2 34 216-249 32-66 (71)
136 1x8y_A Lamin A/C; structural p 27.7 1.7E+02 0.0057 22.6 6.4 10 192-201 4-13 (86)
137 3ni0_A Bone marrow stromal ant 27.6 2.6E+02 0.0089 23.1 8.4 58 210-267 23-87 (99)
138 3qne_A Seryl-tRNA synthetase, 27.6 1.2E+02 0.0043 30.4 7.1 25 174-198 44-68 (485)
139 2yy0_A C-MYC-binding protein; 27.5 92 0.0032 22.5 4.6 17 153-169 19-35 (53)
140 3efg_A Protein SLYX homolog; x 27.4 1.6E+02 0.0053 22.8 6.2 16 193-208 30-45 (78)
141 2yy0_A C-MYC-binding protein; 27.4 71 0.0024 23.2 4.0 10 189-198 38-47 (53)
142 2l5g_B Putative uncharacterize 27.3 90 0.0031 22.3 4.3 19 153-171 16-34 (42)
143 1wle_A Seryl-tRNA synthetase; 27.2 3.3E+02 0.011 27.3 10.1 20 179-198 86-105 (501)
144 3ghg_B Fibrinogen beta chain; 26.9 5.1E+02 0.017 26.2 12.2 25 243-267 166-190 (461)
145 2oqq_A Transcription factor HY 26.1 1.8E+02 0.0061 20.8 5.7 39 226-264 3-41 (42)
146 2zdi_C Prefoldin subunit alpha 26.1 1.4E+02 0.0049 24.6 6.2 26 154-179 24-52 (151)
147 1x79_B RAB GTPase binding effe 25.7 2.9E+02 0.0099 23.0 13.1 16 239-254 90-105 (112)
148 4ghu_A TNF receptor-associated 24.9 1.1E+02 0.0036 26.5 5.3 22 157-178 4-25 (198)
149 1joc_A EEA1, early endosomal a 24.5 2.4E+02 0.0082 23.0 7.2 21 150-170 15-35 (125)
150 2dq0_A Seryl-tRNA synthetase; 24.1 1.4E+02 0.0048 29.4 6.6 65 153-217 38-102 (455)
151 3swy_A Cyclic nucleotide-gated 24.0 94 0.0032 22.3 4.0 27 239-265 4-30 (46)
152 3f1i_H Hepatocyte growth facto 23.9 3.1E+02 0.01 22.6 7.9 30 176-205 64-93 (98)
153 1vf6_A PALS-1, PALS1-associate 23.9 1.5E+02 0.005 23.9 5.5 40 162-201 9-58 (83)
154 1lwu_C Fibrinogen gamma chain; 23.7 1.8E+02 0.0063 27.8 7.2 28 189-216 10-37 (323)
155 2e2a_A Protein (enzyme IIA); h 23.7 83 0.0028 25.6 4.1 32 305-336 19-50 (105)
156 3m48_A General control protein 23.5 75 0.0026 21.7 3.2 25 239-263 6-30 (33)
157 2l5g_B Putative uncharacterize 23.2 83 0.0028 22.5 3.5 17 182-198 21-37 (42)
158 1hs7_A Syntaxin VAM3; UP-and-D 23.0 2.4E+02 0.0082 22.7 6.7 26 180-205 67-92 (97)
159 3kqg_A Langerin, C-type lectin 23.0 1.1E+02 0.0038 24.8 4.8 12 158-169 4-15 (182)
160 2wq1_A General control protein 22.7 1E+02 0.0035 21.1 3.7 25 239-263 6-30 (33)
161 1wcr_A PTS system, N, N'-diace 22.6 90 0.0031 25.4 4.1 32 305-336 17-48 (103)
162 1sjj_A Actinin; 3-helix bundle 22.5 6.2E+02 0.021 25.7 11.1 123 153-275 518-680 (863)
163 2p22_A Suppressor protein STP2 22.2 4.1E+02 0.014 23.5 9.4 24 243-266 66-89 (174)
164 2d4y_A HAP1, flagellar HOOK-as 22.1 4.1E+02 0.014 25.5 9.4 88 170-262 64-151 (463)
165 3iv1_A Tumor susceptibility ge 22.0 2.9E+02 0.01 21.7 8.1 37 209-248 32-68 (78)
166 2ve7_C Kinetochore protein NUF 21.4 29 0.001 31.8 1.1 26 218-243 168-193 (250)
167 2ve7_C Kinetochore protein NUF 21.2 67 0.0023 29.4 3.5 69 162-237 140-208 (250)
168 2efk_A CDC42-interacting prote 21.2 4.1E+02 0.014 23.1 15.0 108 153-266 98-217 (301)
169 2nrj_A HBL B protein; enteroto 20.6 5.4E+02 0.018 24.3 10.1 72 172-257 118-193 (346)
170 1deq_A Fibrinogen (alpha chain 20.6 6.4E+02 0.022 25.1 12.2 109 141-263 49-157 (390)
171 2p22_C Protein SRN2; endosome, 20.5 3.6E+02 0.012 23.9 7.9 28 208-235 82-109 (192)
172 3etw_A Adhesin A; antiparallel 20.5 3.8E+02 0.013 22.5 11.4 82 183-264 8-99 (119)
173 2dgc_A Protein (GCN4); basic d 20.4 1.5E+02 0.0053 21.8 4.7 19 184-202 44-62 (63)
174 1q1s_A Large T antigen; import 20.2 38 0.0013 22.1 1.1 13 108-120 11-23 (26)
175 3k1s_A PTS system, cellobiose- 20.2 1.1E+02 0.0037 25.1 4.2 32 305-336 21-52 (109)
176 3lss_A Seryl-tRNA synthetase; 20.1 4.8E+02 0.016 26.2 9.6 33 235-267 113-145 (484)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.85 E-value=0.13 Score=42.59 Aligned_cols=12 Identities=17% Similarity=0.102 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 018954 156 VALREQVEDLQR 167 (348)
Q Consensus 156 ~~LreQVeeLqk 167 (348)
..|.-+++.++.
T Consensus 9 ~~l~~~~~~~~~ 20 (284)
T 1c1g_A 9 QMLKLDKENALD 20 (284)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHhHHHHHH
Confidence 333333333333
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.66 E-value=0.051 Score=52.71 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHhhHHHHHHHhHHhhHH
Q 018954 153 EELVALREQVEDLQRKMFEKDELLKSLESSKSQV---------------NAVHLKLDELKRLAAEKDSLIKSTQLQLSDA 217 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em---------------~a~~akvDELr~qlaeKe~likStq~QLsda 217 (348)
+|+..++..|..|+.++...+..+...+.-..+. ..+...+..++...+.++..++..+.+..+.
T Consensus 456 ~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (597)
T 3oja_B 456 AEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAK 535 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhh
Confidence 4666677777777777777666666665554322 4455566666666666666666666666555
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 218 KIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 218 ki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
+..+...+.-++++|..+..-.+++.+|+.++..+..||..|+..+
T Consensus 536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555566666666666777777777777777777766665543
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.22 E-value=0.027 Score=61.02 Aligned_cols=109 Identities=18% Similarity=0.228 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHH
Q 018954 155 LVALREQVEDLQRKMFEKDELLKSLE--------SSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQA 226 (348)
Q Consensus 155 l~~LreQVeeLqkKL~EKDelLkSae--------~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqA 226 (348)
-..|..+|++||.+|.++++..+.+. ....++..++..+++|+....|+.. +..++...+.++++...
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~----~~~~v~~L~~e~~~l~~ 998 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKN----ATNRVLSLQEEIAKLRK 998 (1080)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 45677888888888877665554333 2356777777777777776555542 22333333334444444
Q ss_pred HHHHHHHHHHHhhhHH----HHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 227 ALEKSQWEAMTVSRKA----EKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 227 aLEKlewEa~tsn~Kv----e~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
.++++.-|.+.-..+. ++||+.|++|+.|...|.++++.|.
T Consensus 999 ~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 999 ELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333333332 4666777778888888877776655
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.08 E-value=0.1 Score=62.42 Aligned_cols=107 Identities=16% Similarity=0.215 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhh----
Q 018954 158 LREQVEDLQRKMFEKDELLKSL-----------ESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLA---- 222 (348)
Q Consensus 158 LreQVeeLqkKL~EKDelLkSa-----------e~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~La---- 222 (348)
-.+||++||++|.+|.-.|+.. .....+....++.+++.+.+++++..-|...+ .++...|+
T Consensus 1932 t~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k---~~~e~dL~~A~P 2008 (3245)
T 3vkg_A 1932 TEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQK---VKAYADLEKAEP 2008 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhcCC
Confidence 4567777777777766555433 33333444445555555556555554444322 23334443
Q ss_pred --hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 223 --DKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 223 --dKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
=|+++|+++|-++.....+....|..|..++..|..|...|+..+
T Consensus 2009 a~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~ 2055 (3245)
T 3vkg_A 2009 TGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLI 2055 (3245)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377788888888888888888888888888888888888886654
No 5
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.66 E-value=0.77 Score=38.12 Aligned_cols=108 Identities=15% Similarity=0.235 Sum_probs=76.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhH
Q 018954 149 EKEIEELVALREQVEDLQRKMFEKD----ELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADK 224 (348)
Q Consensus 149 ~kd~eEl~~LreQVeeLqkKL~EKD----elLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadK 224 (348)
-..-+|+..+.+++..|+.+|..-+ ++=.....+..++|.|..+|..-+-.+++.+-.+..++.+-.+-..+|.+.
T Consensus 9 ~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el 88 (129)
T 2fxo_A 9 AEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM 88 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455789999999999988886333 333445566799999999999999999999999988887777777778888
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhH
Q 018954 225 QAALEKSQWEAMTVSRKAEKLQEEVESMQGEM 256 (348)
Q Consensus 225 qAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EI 256 (348)
+.-|+..+-..-.-..+-.+|+.+++.+..+|
T Consensus 89 ~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 89 NKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777766544433344444444444444433
No 6
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=95.36 E-value=0.15 Score=42.27 Aligned_cols=53 Identities=26% Similarity=0.430 Sum_probs=36.8
Q ss_pred HHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHH
Q 018954 212 LQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 264 (348)
Q Consensus 212 ~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe 264 (348)
.+|.+++..++++.+.|.++.++...-..--..|=+==-.++.||++.+++++
T Consensus 75 ~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRkLLE 127 (129)
T 3tnu_B 75 LALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRKLLE 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHC
Confidence 46667777777788888777777665555444444433468899999988775
No 7
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=95.21 E-value=0.17 Score=42.13 Aligned_cols=54 Identities=15% Similarity=0.303 Sum_probs=37.5
Q ss_pred HHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018954 212 LQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 265 (348)
Q Consensus 212 ~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~ 265 (348)
.+|.+++..++++.+.|.++.++...-..--..|-+==-.++.||++.++++++
T Consensus 77 ~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRkLLEG 130 (131)
T 3tnu_A 77 MQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRLLEG 130 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHCc
Confidence 466677777777777777777776655555444444334688999999988763
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=94.73 E-value=1.9 Score=38.90 Aligned_cols=12 Identities=8% Similarity=0.260 Sum_probs=8.1
Q ss_pred HHHHHHHHhhhc
Q 018954 258 SFMQIFEGLIKN 269 (348)
Q Consensus 258 slm~~fe~it~N 269 (348)
.|...|+.|.++
T Consensus 176 ~lL~~Yerir~~ 187 (256)
T 3na7_A 176 KIYSFYERIRRW 187 (256)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 566777777753
No 9
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.65 E-value=0.047 Score=59.03 Aligned_cols=19 Identities=21% Similarity=0.316 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 018954 153 EELVALREQVEDLQRKMFE 171 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~E 171 (348)
.|+..|++++++|+.+|..
T Consensus 857 ~El~~L~~eL~el~~~L~~ 875 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQK 875 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 10
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.49 E-value=0.18 Score=54.49 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 018954 155 LVALREQVEDL 165 (348)
Q Consensus 155 l~~LreQVeeL 165 (348)
+..|+++++.+
T Consensus 866 L~el~~~L~~l 876 (1184)
T 1i84_S 866 LQRTKERQQKA 876 (1184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 11
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.48 E-value=1.5 Score=39.04 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh----hhHHH
Q 018954 183 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQ----GEMSS 258 (348)
Q Consensus 183 ~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~----~EIss 258 (348)
..++..+++.+++=|+...--.-+|.-+|..+...+..|......+.+++-|...=..|+..|+-+-++|+ |++-+
T Consensus 68 eke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKa 147 (168)
T 3o0z_A 68 DKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKS 147 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 35566666666666666666666677777777777777777777777777777777777777777777777 66777
Q ss_pred HHHHHHH
Q 018954 259 FMQIFEG 265 (348)
Q Consensus 259 lm~~fe~ 265 (348)
++.-++.
T Consensus 148 lQ~~~eq 154 (168)
T 3o0z_A 148 LQQRLEQ 154 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666654
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.44 E-value=1.2 Score=48.53 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAE 202 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlae 202 (348)
-.|+..|++++++|++...|+..+-..+.++..++..+..++.++.++..+
T Consensus 959 ~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~ 1009 (1080)
T 2dfs_A 959 STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009 (1080)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666655555554444444444444444444444443333
No 13
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=92.91 E-value=0.21 Score=41.57 Aligned_cols=53 Identities=21% Similarity=0.399 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 018954 156 VALREQVEDLQRKMFEKDELL-----------KSLESSKSQVNAVHLKLDELKRLAAEKDSLIK 208 (348)
Q Consensus 156 ~~LreQVeeLqkKL~EKDelL-----------kSae~~~~em~a~~akvDELr~qlaeKe~lik 208 (348)
.+|.=||+-|+-+|-|.+|.+ +-++.++-....++.++++|+.+|.++|.||.
T Consensus 26 sal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI~ 89 (103)
T 4h22_A 26 TNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLE 89 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444 44666778889999999999999999999985
No 14
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=92.42 E-value=5.7 Score=35.40 Aligned_cols=106 Identities=20% Similarity=0.262 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHH
Q 018954 155 LVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWE 234 (348)
Q Consensus 155 l~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewE 234 (348)
+..|+-|+++++.||.-=-+.-.-+.-...++....+.++..-++|.+|=..+... .-.-...++..|+.|+.=-+.
T Consensus 8 i~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~---k~~Leke~~~LQa~L~qEr~~ 84 (168)
T 3o0z_A 8 LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENS---KSQTDKDYYQLQAILEAERRD 84 (168)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777654333333334444666666666666666666664444333 333345666777777665544
Q ss_pred HHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 235 AMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 235 a~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
--..+.-+.+||+.+.+++.||..+..-.
T Consensus 85 r~q~se~~~elq~ri~~L~~El~~~k~~~ 113 (168)
T 3o0z_A 85 RGHDSEMIGDLQARITSLQEEVKHLKHNL 113 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555444433
No 15
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.23 E-value=5.6 Score=35.86 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQ 211 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq 211 (348)
.++.+++..++.+++++...+.-|..+.
T Consensus 46 ~~~~~~~~~l~d~~~~~~~~e~~i~~~~ 73 (256)
T 3na7_A 46 KAILNLEEEKLALKLQVSKNEQTLQDTN 73 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333333
No 16
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=92.19 E-value=1.3 Score=35.51 Aligned_cols=64 Identities=17% Similarity=0.249 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHH
Q 018954 173 DELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAM 236 (348)
Q Consensus 173 DelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~ 236 (348)
|+-.+-+|.++.+||.+.-+|.||-.+-.-=|.=++||..+|+--+..|+.|.|.++.|+-++.
T Consensus 15 ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 15 EEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 4555777888899999999999988777777777888888888888888888888888776653
No 17
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=92.02 E-value=0.43 Score=37.46 Aligned_cols=45 Identities=33% Similarity=0.336 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhH
Q 018954 162 VEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSD 216 (348)
Q Consensus 162 VeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsd 216 (348)
|-+||.-|-+|++= +..-.+.|++|.++|.+||..|+-+|++|..
T Consensus 21 i~eLq~~L~~K~eE----------Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEE----------LRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666653 3444556778888888888888888888764
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.71 E-value=3.7 Score=39.69 Aligned_cols=111 Identities=13% Similarity=0.095 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hhHHHHHHHhHHhh
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAA------------------EKDSLIKSTQLQLS 215 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qla------------------eKe~likStq~QLs 215 (348)
...+|++++.+++.++..=.+- .......++....++++.+..+. .=...++....++.
T Consensus 450 ~~e~l~~e~~~~~~~i~~l~~~---~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 526 (597)
T 3oja_B 450 GNEQLEAEVNELRAEVQQLTNE---QIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQ 526 (597)
T ss_dssp ----CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 4456777877776655433333 23344555556666666555444 11122223333444
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 216 DAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 216 daki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
..+....+++..+++++.|+..-.++.+..+..+..+..|+..+++.+..+-
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 527 ARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5555566677777888888888888888888888888888887766665544
No 19
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=91.38 E-value=2.3 Score=35.82 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 018954 161 QVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLI 207 (348)
Q Consensus 161 QVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~li 207 (348)
+|++|+.+|-..+++|.. -+..+|+|+.+++.++.-+
T Consensus 25 ei~~L~~~L~~AEeaL~~----------Kq~~idelk~ei~q~~~~l 61 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVA----------KQELIDKLKEEAEQHKIVM 61 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 555666666555555544 3445566666666555533
No 20
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.83 E-value=3.4 Score=50.04 Aligned_cols=117 Identities=14% Similarity=0.246 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHH----HH-------HHHHHHHHHHHHHHHHHHH------------------------
Q 018954 151 EIEELVALREQVEDLQRKMFEKDE----LL-------KSLESSKSQVNAVHLKLDE------------------------ 195 (348)
Q Consensus 151 d~eEl~~LreQVeeLqkKL~EKDe----lL-------kSae~~~~em~a~~akvDE------------------------ 195 (348)
-.+.+..|++++.++|.+|.+|.. +| ..|+.-+..+.+..+++.+
T Consensus 1932 t~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~P 2011 (3245)
T 3vkg_A 1932 TEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGP 2011 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCh
Confidence 445677777777777777766632 21 2333333333333333322
Q ss_pred HHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 196 LKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 196 Lr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
+|..|++=+.-+..++.+|..++.+|++.++.|++|+-+.-....+.++|+.+++.++.-+..=..++.+|+
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~ 2083 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLN 2083 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 233444444555566666777777777777777777777766677777777777777777666666665555
No 21
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=90.60 E-value=3.7 Score=36.16 Aligned_cols=60 Identities=32% Similarity=0.355 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQ 211 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq 211 (348)
-.||..||...+-+|+++---|.+|+--.+-.++-+.=--|+-||.--|-|||+.+.|+-
T Consensus 59 QKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT 118 (167)
T 4gkw_A 59 QKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLT 118 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHH
Confidence 358999999999999999888999987777777777777889999999999999998864
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=90.26 E-value=2.7 Score=35.79 Aligned_cols=97 Identities=15% Similarity=0.082 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh--HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhh
Q 018954 153 EELVALREQVEDLQRKMFEK--DE-------LLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLAD 223 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EK--De-------lLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~Lad 223 (348)
+-|..+=.-|++-=+.+... -. +.=.|=+.-.++-.++..+++|..++.+++.=|.++-.+|-.+++++..
T Consensus 28 e~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~ 107 (138)
T 3hnw_A 28 EYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAES 107 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555533 22 2223333457777888888888888888888888888888888777777
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH
Q 018954 224 KQAALEKSQWEAMTVSRKAEKLQEEV 249 (348)
Q Consensus 224 KqAaLEKlewEa~tsn~Kve~LQ~dl 249 (348)
-...+++|+.++-.-..++-+|+..+
T Consensus 108 ~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 108 SAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666655555555554443
No 23
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.14 E-value=6.2 Score=31.64 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=21.3
Q ss_pred HhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHH
Q 018954 210 TQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQ 246 (348)
Q Consensus 210 tq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ 246 (348)
++.+|.+++.+|-+..-.+...|-|+..-|+|+--|.
T Consensus 63 ~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 63 VLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555556666555555555566666666666655443
No 24
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=90.05 E-value=0.85 Score=38.24 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 018954 153 EELVALREQVEDLQRKMFEKDEL---------LKSLESSKSQVNAVHLKLDELKRLAAEKD 204 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EKDel---------LkSae~~~~em~a~~akvDELr~qlaeKe 204 (348)
+|+-...-|+---++||-+=... ..++.+....+++++.||.||++++|+.=
T Consensus 42 ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 42 ENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666667776544332 34566667888999999999999988753
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.68 E-value=5.6 Score=33.80 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHH
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAK 218 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdak 218 (348)
-+|+..++++++.|...+-+++ +.+..++.++..++-+++++++++.+-..=+..+|-++....
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~---kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKD---KEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588888899988888887764 455666778888888888888887776666666666655443
No 26
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.49 E-value=5 Score=30.82 Aligned_cols=75 Identities=13% Similarity=0.125 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHh
Q 018954 187 NAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 266 (348)
Q Consensus 187 ~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~i 266 (348)
.++..||-.|+.+. ..++..+..+..+|-+.....++++-|+..-++|+.-|++|++..+..+......++..
T Consensus 2 ~~ikkKm~~lk~e~-------d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 2 DAIKKKMQMLKLDK-------ENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp CHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555443 23455566666677777778889999999999999999999999999999888888765
Q ss_pred hh
Q 018954 267 IK 268 (348)
Q Consensus 267 t~ 268 (348)
.+
T Consensus 75 ek 76 (81)
T 1ic2_A 75 DK 76 (81)
T ss_dssp GG
T ss_pred HH
Confidence 53
No 27
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.83 E-value=1.1 Score=38.67 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhh
Q 018954 188 AVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKL 221 (348)
Q Consensus 188 a~~akvDELr~qlaeKe~likStq~QLsdaki~L 221 (348)
.+..+++.|+.++.||+.+|.+.|.||.+-|..+
T Consensus 100 ~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v~ 133 (135)
T 2e7s_A 100 AIEILNKRLTEQLREKDMLLDTLTLQLKNLKKVM 133 (135)
T ss_dssp HHHHHHHHHHHTTTHHHHCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577888999999999999999999998877643
No 28
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=87.26 E-value=16 Score=32.65 Aligned_cols=88 Identities=10% Similarity=0.090 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhh-------hhHHHHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 018954 180 ESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKL-------ADKQAALEKSQWEAMTVSRKAEKLQEEVESM 252 (348)
Q Consensus 180 e~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~L-------adKqAaLEKlewEa~tsn~Kve~LQ~dl~sm 252 (348)
.+..+++..+...++++|.++-++=.-++++..+.+.....+ =.-.+.+++|+-.|..+...++.|.+....-
T Consensus 75 ~s~ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~F~~~ 154 (192)
T 2p22_C 75 RDQFKQLEENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETTTRSI 154 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444455556666666666666666666666666665544333 1235778999999999999999999998764
Q ss_pred --hhhHHHHHHHHHHhh
Q 018954 253 --QGEMSSFMQIFEGLI 267 (348)
Q Consensus 253 --~~EIsslm~~fe~it 267 (348)
+-++..|...|..+.
T Consensus 155 ~~e~dv~~Fl~~y~~~R 171 (192)
T 2p22_C 155 DSADDLDQFIKNYLDIR 171 (192)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHH
Confidence 567889988886544
No 29
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=87.11 E-value=9 Score=29.69 Aligned_cols=54 Identities=13% Similarity=0.224 Sum_probs=33.8
Q ss_pred HHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018954 212 LQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 265 (348)
Q Consensus 212 ~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~ 265 (348)
.++.+.+..++...+.|.++..+.-.-.+--..|=+==-.++.||++.++++++
T Consensus 26 ~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLEG 79 (84)
T 1gk4_A 26 VEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEG 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 355666666666666666666665444433333333333578999999999874
No 30
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=87.11 E-value=4 Score=35.96 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHH
Q 018954 176 LKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEA 235 (348)
Q Consensus 176 LkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa 235 (348)
+..++.+..+...+..+|..|...+.+|..++..+|.++.--++.+.-.+..+.+||-|-
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557888889999999999999999999999999999999999999998888888888764
No 31
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=87.05 E-value=1.5 Score=37.03 Aligned_cols=56 Identities=21% Similarity=0.270 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDEL---------LKSLESSKSQVNAVHLKLDELKRLAAEKDS 205 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDel---------LkSae~~~~em~a~~akvDELr~qlaeKe~ 205 (348)
+--+|+....-|+---++||.+=... ..++......+++++.||+||++++|+.=+
T Consensus 26 eLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 26 ELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457777777888888888654443 346667778999999999999999988643
No 32
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=87.02 E-value=1.4 Score=35.08 Aligned_cols=51 Identities=24% Similarity=0.365 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018954 153 EELVALREQVEDLQRKMFEKDEL---------LKSLESSKSQVNAVHLKLDELKRLAAEK 203 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EKDel---------LkSae~~~~em~a~~akvDELr~qlaeK 203 (348)
+|+-...-|+---++||-+=... ..++......+++++.||.+|++++|+.
T Consensus 12 ~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 12 DNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555565433222 3345555688888888888888888875
No 33
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=86.82 E-value=14 Score=31.67 Aligned_cols=109 Identities=18% Similarity=0.232 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHH
Q 018954 155 LVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWE 234 (348)
Q Consensus 155 l~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewE 234 (348)
|.....++++..+..-|-+..++.+++.. ..-..+|+.|-.+|.+-....+.+-.-..++--+|+--..-|++.+--
T Consensus 19 l~~a~~kLeeaek~adE~eR~~k~lE~r~---~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeR 95 (147)
T 2b9c_A 19 LATALQKLEEAEKAADESERGMKVIESRA---QKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEER 95 (147)
T ss_dssp TTHHHHHHHHHHHHHHHHTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888888887777776653 344556777777777767777777777888888999999999999999
Q ss_pred HHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHh
Q 018954 235 AMTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 266 (348)
Q Consensus 235 a~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~i 266 (348)
+-....|+-.|+++|..+..-+-+|....++-
T Consensus 96 ae~aE~k~~eLEeeL~~~~~nlKsLE~~eeka 127 (147)
T 2b9c_A 96 AELSEGKCAELEEELKTVTNNLKSLEDKVEEL 127 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence 99999999999999999999999987766543
No 34
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=86.17 E-value=23 Score=33.57 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=14.4
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhHHHHHHHHH
Q 018954 234 EAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 264 (348)
Q Consensus 234 Ea~tsn~Kve~LQ~dl~sm~~EIsslm~~fe 264 (348)
++-.-.+|+++|++++-.+..+|.-+.+.++
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 437 EKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555555544444444444444443
No 35
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=85.50 E-value=14 Score=30.35 Aligned_cols=63 Identities=17% Similarity=0.185 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhh
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLA 222 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~La 222 (348)
..-.+|..||.||+.+.. ||-. +..++.-++..+|.+|..+.+--.+-.++...+...+..+-
T Consensus 17 ~ye~~I~~LR~qid~~~~---e~a~-------l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD 79 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTN---DKAR-------VEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 79 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhccc
Confidence 344467777777777654 2333 34556666777777777776666666666666666665554
No 36
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=85.12 E-value=13 Score=29.57 Aligned_cols=52 Identities=10% Similarity=0.150 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhh
Q 018954 171 EKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLA 222 (348)
Q Consensus 171 EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~La 222 (348)
|||.++.-++....++..+......+-.++..=-.=|+.++.+|-.+...|.
T Consensus 17 e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 17 DKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666665555555544444444443333333444444444443333
No 37
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=84.22 E-value=6.2 Score=30.88 Aligned_cols=15 Identities=20% Similarity=0.627 Sum_probs=12.5
Q ss_pred hhhhhHHHHHHHHHH
Q 018954 251 SMQGEMSSFMQIFEG 265 (348)
Q Consensus 251 sm~~EIsslm~~fe~ 265 (348)
.++.||++.++++++
T Consensus 67 ~Le~EIatYRkLLEG 81 (86)
T 1x8y_A 67 ALDMEIHAYRKLLEG 81 (86)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcC
Confidence 578899999998875
No 38
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=83.69 E-value=2.8 Score=34.57 Aligned_cols=52 Identities=23% Similarity=0.334 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 018954 153 EELVALREQVEDLQRKMFEKDEL---------LKSLESSKSQVNAVHLKLDELKRLAAEKD 204 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EKDel---------LkSae~~~~em~a~~akvDELr~qlaeKe 204 (348)
+|+-...-|+---++||-+=... ..++.+....+++++.||.+|++++|+.=
T Consensus 12 ~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v 72 (96)
T 2ic9_A 12 DNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLI 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555666666666443322 33455556888888888888888888753
No 39
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=83.44 E-value=3.8 Score=32.96 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
++++.++++..-|..+++|=+.-. ..++.+.+..+++..+.|.++..+...-..-...|-+---.++.||++.++++
T Consensus 12 ~~~~~Lq~~~~~LE~~l~e~E~~~---~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 12 NLYFQGQKESRACLERIQELEDLL---AKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp ------CCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444321 23455555555666666666555554444433334333335789999999888
Q ss_pred HH
Q 018954 264 EG 265 (348)
Q Consensus 264 e~ 265 (348)
++
T Consensus 89 EG 90 (95)
T 3mov_A 89 EG 90 (95)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 40
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=82.32 E-value=17 Score=28.85 Aligned_cols=86 Identities=13% Similarity=0.157 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHH
Q 018954 153 EELVALREQVEDLQRKMFEKDELLKSLES----SKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAAL 228 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EKDelLkSae~----~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaL 228 (348)
.=+.+|+-+.+....+.-.-+.-++.++. ...+|.+++.++--|..++- -++.+|.+++.+|-...-..
T Consensus 9 kKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld-------~~~e~l~~a~~kLe~~ek~~ 81 (101)
T 3u59_A 9 KKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVE-------KYSESVKEAQEKLEQAEKKA 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554444444444443 35677777777776666654 36667778887777777777
Q ss_pred HHHHHHHHHhhhHHHHH
Q 018954 229 EKSQWEAMTVSRKAEKL 245 (348)
Q Consensus 229 EKlewEa~tsn~Kve~L 245 (348)
...|-||..-|+|+--|
T Consensus 82 ~~AE~evasLnRriqll 98 (101)
T 3u59_A 82 TDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888877644
No 41
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=81.47 E-value=3.9 Score=34.98 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=21.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 018954 217 AKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 257 (348)
Q Consensus 217 aki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIs 257 (348)
++-.|.-|+|-||+|+ .-+.|++.|+..++.++.+|+
T Consensus 49 ~qsele~k~aeLe~le----eL~~ki~eL~~kvA~le~e~~ 85 (125)
T 2pms_C 49 LQSKLDAKKAKLSKLE----ELSDKIDELDAEIAKLEDQLK 85 (125)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHH
Confidence 4455778888899881 234455555555555555544
No 42
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=81.40 E-value=4.1 Score=34.87 Aligned_cols=51 Identities=24% Similarity=0.289 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhH-H------hhHHHHhhhhHHHHHHHHHHHHH
Q 018954 186 VNAVHLKLDELKRLAAEKDSLIKSTQL-Q------LSDAKIKLADKQAALEKSQWEAM 236 (348)
Q Consensus 186 m~a~~akvDELr~qlaeKe~likStq~-Q------Lsdaki~LadKqAaLEKlewEa~ 236 (348)
+..++.+||+|...+|+=+--|.-.+. . +...+-.|+.|+|-|+|.|-++.
T Consensus 63 leeL~~ki~eL~~kvA~le~e~~~~e~~~~~~~~~~e~le~~la~KkAEleKtqa~Ld 120 (125)
T 2pms_C 63 LEELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAKKAELEKTEADLK 120 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777766655553322 1 45567889999999999886654
No 43
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=81.21 E-value=13 Score=31.33 Aligned_cols=53 Identities=26% Similarity=0.310 Sum_probs=41.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018954 148 SEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLA 200 (348)
Q Consensus 148 ~~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~ql 200 (348)
+..++.|+-.|..++....+.|.+|...+.-++..+.+..+...+|.=|+.|+
T Consensus 19 ~~~~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv 71 (110)
T 2v4h_A 19 SHMASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQA 71 (110)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566689999999999999999999888888887777766666777676665
No 44
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=78.52 E-value=17 Score=29.75 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 018954 161 QVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLI 207 (348)
Q Consensus 161 QVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~li 207 (348)
||+.|+.+|-.-+++|.+ -+..||+|+..++.++..+
T Consensus 3 ~~~~L~~~L~~aEeaL~~----------kq~~id~lke~~~q~~~~~ 39 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVA----------KQELIDKLKEEAEQHKIVM 39 (94)
T ss_dssp CHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHH
Confidence 677888888777777765 3445666666666655444
No 45
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.58 E-value=4.8 Score=34.77 Aligned_cols=31 Identities=10% Similarity=0.195 Sum_probs=14.8
Q ss_pred HHhhhHHHHHHHHHhhhhhhHHHHHHHHHHh
Q 018954 236 MTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 266 (348)
Q Consensus 236 ~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~i 266 (348)
.....|++.|+..+...+.=|.++..++..|
T Consensus 99 ~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~L 129 (135)
T 2e7s_A 99 YAIEILNKRLTEQLREKDMLLDTLTLQLKNL 129 (135)
T ss_dssp HHHHHHHHHHHHTTTHHHHCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788887777777777776666544
No 46
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=76.62 E-value=22 Score=35.38 Aligned_cols=38 Identities=16% Similarity=0.031 Sum_probs=26.1
Q ss_pred HhhhHHHHHHHHHhhhhhhHHHHHHHHHHhhhcCCCCC
Q 018954 237 TVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKNDSTVN 274 (348)
Q Consensus 237 tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it~N~S~~~ 274 (348)
.-+.-+..||..+.+....|..|+..+..|...-+.+.
T Consensus 102 ~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~~~~ 139 (411)
T 3ghg_C 102 THDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPC 139 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 33455567777777778888888888887775554443
No 47
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.47 E-value=27 Score=28.65 Aligned_cols=98 Identities=14% Similarity=0.240 Sum_probs=32.7
Q ss_pred hhhHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHH
Q 018954 149 EKEIEELVA-LREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAA 227 (348)
Q Consensus 149 ~kd~eEl~~-LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAa 227 (348)
+++|.|+-. -+.++++|+...---.+.|++ ++.+++.++-.|..|.-++..=.+...|+..+|.+++..
T Consensus 3 ~knr~eaE~~y~~K~eel~~~~~~~~~~l~~---~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~------- 72 (129)
T 3tnu_B 3 NRSRTEAESWYQTKYEELQQTAGRHGDDLRN---TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR------- 72 (129)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------
Confidence 344555433 456777777666544444443 344555555555544444433333344444444444331
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHH
Q 018954 228 LEKSQWEAMTVSRKAEKLQEEVESMQGEMSSF 259 (348)
Q Consensus 228 LEKlewEa~tsn~Kve~LQ~dl~sm~~EIssl 259 (348)
.+.++..-+.++..|+.+|..+..++...
T Consensus 73 ---~~~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 73 ---GELALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 23344444555556666666666665543
No 48
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=75.73 E-value=65 Score=31.81 Aligned_cols=105 Identities=9% Similarity=0.041 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhh
Q 018954 160 EQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVS 239 (348)
Q Consensus 160 eQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn 239 (348)
.|--.+.+.|.+=+.+|+.++++.+++..+-..|...-.+ .+. ++....-. +-.+..+|.--+.++|--+..-.
T Consensus 31 k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~---~Q~--~~~d~~e~-~tq~skkml~~~~~~e~~~~~~~ 104 (409)
T 1m1j_C 31 KYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPS---EKQ--TLPQSIEQ-LTQKSKKIIEEIIRYENTILAHE 104 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS---STT--CCSSCHHH-HHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccC--CCCCchhh-HHHHHHHHHHHHHHHHHHhcchH
Confidence 3334455555555666666776666666555555544111 100 00000000 00112222233344444555666
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhcC
Q 018954 240 RKAEKLQEEVESMQGEMSSFMQIFEGLIKND 270 (348)
Q Consensus 240 ~Kve~LQ~dl~sm~~EIsslm~~fe~it~N~ 270 (348)
..+..||..+.+++..|..|...+..|..+.
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 6777888888888888888877776666443
No 49
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=75.00 E-value=27 Score=29.18 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=37.3
Q ss_pred hhhHH-HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018954 149 EKEIE-ELVALREQVEDLQRKMFE-KDELLKSLESSKSQVNAVHLKLDELKRL 199 (348)
Q Consensus 149 ~kd~e-El~~LreQVeeLqkKL~E-KDelLkSae~~~~em~a~~akvDELr~q 199 (348)
..+|+ .|.+|+-.|+.|+..|-. |-|.=+-+.++.++++.|.+.+++-+++
T Consensus 10 ~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 10 KDEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 566788888888776532 6666677778889999999999988765
No 50
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=74.38 E-value=34 Score=27.98 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHH-------HHHHHHhhhhhhH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAE-------KLQEEVESMQGEM 256 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve-------~LQ~dl~sm~~EI 256 (348)
.+|+.+..+||.+...=+.=+.-|..++..+-+-|.+..+-.+.-..+|-++..--+=|. +|+..+.++..||
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl 99 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544445555566666666666655555555555555444322221 2556666666666
Q ss_pred HHHHHHHH
Q 018954 257 SSFMQIFE 264 (348)
Q Consensus 257 sslm~~fe 264 (348)
.-|.+.++
T Consensus 100 ~FLKk~he 107 (119)
T 3ol1_A 100 AFLKKLHE 107 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555553
No 51
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=74.36 E-value=31 Score=27.51 Aligned_cols=83 Identities=13% Similarity=0.122 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 018954 170 FEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEV 249 (348)
Q Consensus 170 ~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl 249 (348)
.|||.++.-++....++..+...... ++.-|.|+|..+.. .+.-|++++-.+...+.|.+.-....
T Consensus 16 ~e~e~a~drae~~e~~~k~~e~~~~~-------~E~Ei~sL~kk~~~-------lE~eld~~ee~L~ea~~kLee~ek~~ 81 (101)
T 3u1c_A 16 LDKENALDRAEQAEADKKAAEERSKQ-------LEDDIVQLEKQLRV-------TEDSRDQVLEELHKSEDSLLFAEENA 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777766666655554444 44444454443332 22334444555555555555555555
Q ss_pred hhhhhhHHHHHHHHHHh
Q 018954 250 ESMQGEMSSFMQIFEGL 266 (348)
Q Consensus 250 ~sm~~EIsslm~~fe~i 266 (348)
+..++++.+|..-++-|
T Consensus 82 ~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 82 AKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66677777776665544
No 52
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.55 E-value=25 Score=28.92 Aligned_cols=99 Identities=18% Similarity=0.246 Sum_probs=30.3
Q ss_pred hhhHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHH
Q 018954 149 EKEIEELVA-LREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAA 227 (348)
Q Consensus 149 ~kd~eEl~~-LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAa 227 (348)
+++|.|+-. -+.++++|+...---.+.|++ ++.+++.++-+|..|.-++.-=.....|+..+|.+++..
T Consensus 5 ~knr~eaE~~y~~K~eel~~~~~~~~~~l~~---~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~------- 74 (131)
T 3tnu_A 5 EKNRKDAEEWFFTKTEELNREVATNSELVQS---GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGR------- 74 (131)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------
Confidence 455555543 456778877766554444444 334444444444444444433223333444444444331
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHH
Q 018954 228 LEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFM 260 (348)
Q Consensus 228 LEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm 260 (348)
.+.++..-+.++..|+.+|..+..++....
T Consensus 75 ---~~~~l~~~q~~i~~lE~eL~~~r~em~~ql 104 (131)
T 3tnu_A 75 ---YCMQLAQIQEMIGSVEEQLAQLRCEMEQQN 104 (131)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444455556666666666666655433
No 53
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=73.20 E-value=19 Score=28.82 Aligned_cols=57 Identities=28% Similarity=0.337 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhh
Q 018954 149 EKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLS 215 (348)
Q Consensus 149 ~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLs 215 (348)
+.-..|+..||-.|++|--.=+ +..-.+.+..+.|-.|+++|..||+=|+.+|.||.
T Consensus 22 E~L~qEi~~Lr~kv~elEnErl----------QyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERN----------QYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3445577777777777654322 23345555668888899999999999999999985
No 54
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=72.22 E-value=55 Score=29.42 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 018954 153 EELVALREQVEDLQRKMFE 171 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~E 171 (348)
+|+..-++..+.++.++.+
T Consensus 10 ee~~ywk~~~~~~~q~~~~ 28 (189)
T 2v71_A 10 EETAYWKELSMKYKQSFQE 28 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4666666655555555443
No 55
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=71.94 E-value=87 Score=31.55 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhHHhhH
Q 018954 186 VNAVHLKLDELKRLAAEKDSLIKSTQLQLSD 216 (348)
Q Consensus 186 m~a~~akvDELr~qlaeKe~likStq~QLsd 216 (348)
|++|+.++.+..+++-+.+..|+-...+|..
T Consensus 123 i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~ 153 (464)
T 1m1j_B 123 VNMIDNKLVKTQKQRKDNDIILSEYNTEMEL 153 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 4555555666655555555555554444443
No 56
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=71.68 E-value=38 Score=27.28 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESS 182 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~ 182 (348)
.-+.++..|+.++..|+.++.|=+.++++++.+
T Consensus 12 ~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l 44 (133)
T 1fxk_C 12 IYQSQVELIQQQMEAVRATISELEILEKTLSDI 44 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566677777777777777766666666654
No 57
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.68 E-value=54 Score=28.67 Aligned_cols=32 Identities=9% Similarity=0.210 Sum_probs=19.7
Q ss_pred HHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHh
Q 018954 235 AMTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 266 (348)
Q Consensus 235 a~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~i 266 (348)
-.....|++.|+..+...+.=|.++..++..|
T Consensus 110 ~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~L 141 (154)
T 2ocy_A 110 KYAIEILNKRLTEQLREKDTLLDTLTLQLKNL 141 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445667777777666666666666666554
No 58
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=69.39 E-value=39 Score=35.05 Aligned_cols=94 Identities=9% Similarity=0.126 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hhHHHHHHHhHHhhHHHHhhhhHHHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESS-KSQVNAVHLKLDELKRLAA-EKDSLIKSTQLQLSDAKIKLADKQAA 227 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~-~~em~a~~akvDELr~qla-eKe~likStq~QLsdaki~LadKqAa 227 (348)
..+.-|..|+.||++|++.=.+=+...+.+-.. +.++...+ ..|....||+ |=+.-|.+++..+.+....|+-.|..
T Consensus 61 DltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsn 139 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKN 139 (562)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445557788888888877665555544433222 11111111 2233333333 33333445555555544555556666
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhh
Q 018954 228 LEKSQWEAMTVSRKAEKLQEEVES 251 (348)
Q Consensus 228 LEKlewEa~tsn~Kve~LQ~dl~s 251 (348)
|+.+- .|.-+|+.||+-
T Consensus 140 Ledq~-------~kIQRLEvDIdi 156 (562)
T 3ghg_A 140 VRAQL-------VDMKRLEVDIDI 156 (562)
T ss_dssp HHHHH-------HHHHHHHHHHHH
T ss_pred HHHHH-------HHHHHHHHHHHH
Confidence 65543 234456666653
No 59
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=68.43 E-value=18 Score=37.45 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 018954 223 DKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMS 257 (348)
Q Consensus 223 dKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIs 257 (348)
+.+--++-|+.+|-.-=....-||.-|..+..+|.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQ 148 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMK 148 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333333444444444444443
No 60
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=66.78 E-value=18 Score=28.35 Aligned_cols=46 Identities=17% Similarity=0.149 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHh
Q 018954 221 LADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 266 (348)
Q Consensus 221 LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~i 266 (348)
+-+.|.+|++-.-|+......+..|+..|+..+.+|..|+..++++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667777667777777777777777777777777777777665
No 61
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=65.56 E-value=23 Score=25.95 Aligned_cols=52 Identities=12% Similarity=0.177 Sum_probs=31.5
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018954 214 LSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEG 265 (348)
Q Consensus 214 Lsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~ 265 (348)
|.+++..++...+.|.++..+.-.-..--..|=+==-.++.||++.++++++
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLLEg 53 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLLEG 53 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 3445555666666666666655444443333333333578999999999874
No 62
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=65.14 E-value=71 Score=31.55 Aligned_cols=33 Identities=9% Similarity=0.136 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESS 182 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~ 182 (348)
....+|..|..-|.+|+.+-.+-..+++++..+
T Consensus 35 ~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 35 TTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677888888888888888888888887777
No 63
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=64.91 E-value=28 Score=28.66 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=27.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018954 169 MFEKDELLKSLESSKSQVNAVHLKLDELKRLAAE 202 (348)
Q Consensus 169 L~EKDelLkSae~~~~em~a~~akvDELr~qlae 202 (348)
.-||+.+|+..-....++..|++++.+|++.+.+
T Consensus 3 ~~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~ 36 (125)
T 1joc_A 3 QDERRALLERCLKGEGEIEKLQTKVLELQRKLDN 36 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3578888888888888888888888888888753
No 64
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=63.65 E-value=7.6 Score=29.99 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHH
Q 018954 160 EQVEDLQRKMFEKDELLKSLES 181 (348)
Q Consensus 160 eQVeeLqkKL~EKDelLkSae~ 181 (348)
.++++|++.+..||+..+-+|.
T Consensus 11 ~~~e~~~~~i~~Kde~I~eLE~ 32 (67)
T 1zxa_A 11 ELEEDFAKILMLKEERIKELEK 32 (67)
T ss_dssp ------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHH
Confidence 4567777777777776554443
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=63.17 E-value=1e+02 Score=29.16 Aligned_cols=42 Identities=12% Similarity=0.061 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 222 ADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 222 adKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
++.|.-.+++..+........++|.++-...+-+|..+...+
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 333333334444444444444444444444444444443333
No 66
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=62.71 E-value=23 Score=31.80 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=10.3
Q ss_pred hHHhhHHHHhhhhHHHHHHHH
Q 018954 211 QLQLSDAKIKLADKQAALEKS 231 (348)
Q Consensus 211 q~QLsdaki~LadKqAaLEKl 231 (348)
+.++..++..+...++.++.+
T Consensus 113 ~~~~~~a~~~~~~~~a~l~~~ 133 (341)
T 3fpp_A 113 QQDLDNAATEMAVKQAQIGTI 133 (341)
T ss_dssp THHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555444444433
No 67
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=62.39 E-value=10 Score=34.38 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=7.6
Q ss_pred HHhhHHHHhhhhHHHHHH
Q 018954 212 LQLSDAKIKLADKQAALE 229 (348)
Q Consensus 212 ~QLsdaki~LadKqAaLE 229 (348)
.+|..++..+...++.++
T Consensus 115 ~~~~~a~~~~~~a~a~~~ 132 (369)
T 4dk0_A 115 DTLNTAKATLNNAKAEMD 132 (369)
T ss_dssp GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 68
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=62.17 E-value=80 Score=27.50 Aligned_cols=102 Identities=14% Similarity=0.162 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHH
Q 018954 159 REQVEDLQRKMFEKDELLKSLESSK----SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWE 234 (348)
Q Consensus 159 reQVeeLqkKL~EKDelLkSae~~~----~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewE 234 (348)
..+|-+|...|.-=+.-|+|++.+. .++.....+|-.|..++.+=+ .--..|.-..+-.+..|.+||-+
T Consensus 41 E~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE-------~RAE~AERsv~kLEk~id~lEd~ 113 (155)
T 2efr_A 41 EGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE-------TRAEFAERSVTKLEKSIDDLEDE 113 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555556666666664 333344444444444443333 22334556677788889999999
Q ss_pred HHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 235 AMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 235 a~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
+.....|...++.+|+..-.+|+++..-|..|.
T Consensus 114 L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~ 146 (155)
T 2efr_A 114 LYAQKLKYKAISEEMKQLEDKVEELLSKNYHLE 146 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 999999999999999999999999888776553
No 69
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=60.91 E-value=57 Score=25.39 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHH
Q 018954 239 SRKAEKLQEEVESMQGEMSSFMQIFE 264 (348)
Q Consensus 239 n~Kve~LQ~dl~sm~~EIsslm~~fe 264 (348)
..+...|...+..++.+|..|...+.
T Consensus 77 ~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 77 KNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 70
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=60.47 E-value=24 Score=25.55 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 224 KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 224 KqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
|..-++.||-++..-...-..|+.++..++.|+.+|..+|
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666777666666677777777777777777776654
No 71
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=60.33 E-value=45 Score=27.82 Aligned_cols=60 Identities=27% Similarity=0.271 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 018954 152 IEELVALREQVEDLQRKMFEKDE-----------LLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQ 211 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDe-----------lLkSae~~~~em~a~~akvDELr~qlaeKe~likStq 211 (348)
..|+..|+..-+.|+++|.+=+- ..-|++.+...+|.+....--|-.+|.||+.|...+|
T Consensus 41 q~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe~L~~~~Q 111 (111)
T 2v66_B 41 EDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQ 111 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35788888888888888765332 3345555567778887788888899999998876654
No 72
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=59.97 E-value=17 Score=35.20 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVN 187 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~ 187 (348)
++..|.++|+.|++++.+.++-++.++....+++
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666555544444444333333
No 73
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=59.76 E-value=1.2e+02 Score=28.66 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH
Q 018954 227 ALEKSQWEAMTVSRKAEKLQEE 248 (348)
Q Consensus 227 aLEKlewEa~tsn~Kve~LQ~d 248 (348)
-++.||-|+.+-|+|.+++..+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544333
No 74
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=58.91 E-value=30 Score=25.41 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHH
Q 018954 224 KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 264 (348)
Q Consensus 224 KqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe 264 (348)
|+.-++.||-++..-...-..|+.++..++.|+..|..+|.
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777777777777777777777777776663
No 75
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=54.52 E-value=41 Score=30.39 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 018954 154 ELVALREQVEDLQRKMF 170 (348)
Q Consensus 154 El~~LreQVeeLqkKL~ 170 (348)
++..++.++..++..|.
T Consensus 71 ~l~~~~a~l~~~~a~l~ 87 (369)
T 4dk0_A 71 TLNTRKAALASYQAQLV 87 (369)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44445555555554443
No 76
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=54.19 E-value=1.2e+02 Score=27.18 Aligned_cols=20 Identities=10% Similarity=0.245 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 018954 152 IEELVALREQVEDLQRKMFE 171 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~E 171 (348)
|+....+..++++|+..|-|
T Consensus 16 k~~~~~~~q~~~~le~El~E 35 (189)
T 2v71_A 16 KELSMKYKQSFQEARDELVE 35 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555543
No 77
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=53.99 E-value=42 Score=27.50 Aligned_cols=83 Identities=17% Similarity=0.300 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh--------hHHHHhhhhHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQL--------SDAKIKLADKQ 225 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QL--------sdaki~LadKq 225 (348)
++..|++++..|+.++...+.=+..+..- +.+-+..-.+=++-..-+..+| .+|..|.++-
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~----------l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~a- 74 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLRED----------IAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADA- 74 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 56778888888888777755544443333 3333322222222333333333 3344444432
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 018954 226 AALEKSQWEAMTVSRKAEKLQEEVESMQ 253 (348)
Q Consensus 226 AaLEKlewEa~tsn~Kve~LQ~dl~sm~ 253 (348)
..+-....+|+++|+..|...+
T Consensus 75 ------r~e~~~~e~kn~~L~~qL~d~d 96 (97)
T 2eqb_B 75 ------RKEKYAIEILNKRLTEQLREKD 96 (97)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHhhcc
Confidence 3334455678888888877653
No 78
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=53.57 E-value=28 Score=31.59 Aligned_cols=34 Identities=18% Similarity=0.061 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhh
Q 018954 188 AVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKL 221 (348)
Q Consensus 188 a~~akvDELr~qlaeKe~likStq~QLsdaki~L 221 (348)
.|...+.-|..++.-|+.-|+++|.||..++...
T Consensus 24 ~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 24 NLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444444455555555555555544444444
No 79
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=53.49 E-value=72 Score=24.27 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhh
Q 018954 157 ALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLS 215 (348)
Q Consensus 157 ~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLs 215 (348)
...++++.++.+|-+.+.-+ ....++|.+++.+|-.|..++-.=+.-+..++..|.
T Consensus 17 ~a~~~~~~~e~~l~~~e~~~---~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 17 NALDRAEQAEADKKAAEERS---KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444322 222344555555555554444443333333333333
No 80
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=53.37 E-value=33 Score=28.38 Aligned_cols=50 Identities=12% Similarity=0.160 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018954 154 ELVALREQVEDLQRKMFEK-DELLKSLESSKSQVNAVHLKLDELKRLAAEK 203 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EK-DelLkSae~~~~em~a~~akvDELr~qlaeK 203 (348)
.+....+.+.++-..|.-+ +++...++.+.+++..++.++++|+.+++..
T Consensus 8 ~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 8 AVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp HHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777777644 6888888888888888888888888887753
No 81
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=53.24 E-value=1.2e+02 Score=26.60 Aligned_cols=84 Identities=7% Similarity=0.132 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh--------hHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQL--------SDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGE 255 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QL--------sdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~E 255 (348)
.++..+...+.+-+..-.+=+.-..-+..+| .+|..|.|+-...-..+|.-+..=.....+-+.-|++++.+
T Consensus 58 ~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~q 137 (154)
T 2ocy_A 58 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQ 137 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443333333333333344333 35666666655554455544444444444445555577777
Q ss_pred HHHHHHHHHHhh
Q 018954 256 MSSFMQIFEGLI 267 (348)
Q Consensus 256 Isslm~~fe~it 267 (348)
+..|-.+|+++.
T Consensus 138 l~~LK~v~~~m~ 149 (154)
T 2ocy_A 138 LKNLKKVMHSLD 149 (154)
T ss_dssp HHHHHHTTSCCC
T ss_pred HHHHHHHHHHhh
Confidence 777777776655
No 82
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=51.97 E-value=1.1e+02 Score=28.98 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=53.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhH
Q 018954 148 SEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSD 216 (348)
Q Consensus 148 ~~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsd 216 (348)
.+.-+.++..++++|++|++++..+..+..++......++.++..|+.-..-|..=...-.++..++..
T Consensus 221 a~~a~k~~~~~~~ei~~l~~~i~~~~~l~~~l~~~~~~~~~l~~~I~~Ai~al~~l~~~W~~m~~~~~~ 289 (346)
T 2nrj_A 221 VGVARDNLGKLEPLLAELRQTVDYKVTLNRVVGVAYSNINEMHKALDDAINALTYMSTQWHDLDSQYSG 289 (346)
T ss_dssp EEEEGGGHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456778899999999999988888889999999999999998888776666555556666666444
No 83
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=51.95 E-value=49 Score=29.14 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Q 018954 158 LREQVEDLQRKMFEKDELLKSLESS----KSQVNAVHLKLDELKRLAAE 202 (348)
Q Consensus 158 LreQVeeLqkKL~EKDelLkSae~~----~~em~a~~akvDELr~qlae 202 (348)
.+.++.+|..+++.|..-|..+-.. .+.+.++..+|.+|+.++..
T Consensus 83 ~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 83 YYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888777765443 47888888888888877765
No 84
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=51.30 E-value=71 Score=26.13 Aligned_cols=76 Identities=18% Similarity=0.274 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH-----HHHHHHhhhH-----HHHHHHHHhhhhhhHHHHHH
Q 018954 192 KLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS-----QWEAMTVSRK-----AEKLQEEVESMQGEMSSFMQ 261 (348)
Q Consensus 192 kvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKl-----ewEa~tsn~K-----ve~LQ~dl~sm~~EIsslm~ 261 (348)
.||.|..+|..-+-.+.+.|.++.+-|..++-+.+.+|.+ |-+|=.+-=+ -|+|+++...++.++..++.
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~ 82 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 82 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3566666666666666666666666666666666666552 2222222211 24555555556666666665
Q ss_pred HHHHhh
Q 018954 262 IFEGLI 267 (348)
Q Consensus 262 ~fe~it 267 (348)
.+.+|.
T Consensus 83 q~~~L~ 88 (94)
T 3jsv_C 83 EFNKLK 88 (94)
T ss_dssp TTC---
T ss_pred HHHHHH
Confidence 555554
No 85
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=50.94 E-value=2.1e+02 Score=28.85 Aligned_cols=41 Identities=7% Similarity=0.076 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHH
Q 018954 188 AVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAAL 228 (348)
Q Consensus 188 a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaL 228 (348)
.++.-|-.|+..+.+++..+......+.+...+|...++.+
T Consensus 118 ~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 118 TMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555544444444444444433
No 86
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=50.81 E-value=86 Score=24.39 Aligned_cols=33 Identities=18% Similarity=0.374 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 018954 149 EKEIEELVALREQVEDLQRKMFEKDELLKSLES 181 (348)
Q Consensus 149 ~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~ 181 (348)
...-+|+..+.+++..|+.+|..-+...+.++.
T Consensus 10 ~~~eeEm~~~eeel~~lke~l~k~e~~rkele~ 42 (89)
T 3bas_A 10 ARQEEEMKEQLKQMDKMKEDLAKTERIKKELEE 42 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999998888644444444443
No 87
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=49.67 E-value=88 Score=24.19 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSK 183 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~ 183 (348)
.+..|+.++..|..++..++.-++.++...
T Consensus 14 ~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~ 43 (117)
T 2zqm_A 14 QLESYQQQLQLVVQQKQKVQLELTEAKKAL 43 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444444444443
No 88
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=48.53 E-value=44 Score=25.77 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHH
Q 018954 182 SKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEK 230 (348)
Q Consensus 182 ~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEK 230 (348)
+..+|..+.++|.+|..++++=+++-. -...+......|++.+..|+.
T Consensus 27 le~~Ie~LE~~i~~le~~ladp~~y~~-d~~~~~~l~~~l~~~e~eLe~ 74 (89)
T 2lw1_A 27 LPQLLEDLEAKLEALQTQVADASFFSQ-PHEQTQKVLADMAAAEQELEQ 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccccC-CHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555444421 112333444444444444444
No 89
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=48.29 E-value=60 Score=24.99 Aligned_cols=56 Identities=18% Similarity=0.134 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLES---SKSQVNAVHLKLDELKRLAAEKDS 205 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~---~~~em~a~~akvDELr~qlaeKe~ 205 (348)
+..-||..|-.+|+.|..++.+=+..|-.... --..+..+.+.++++..+|.+...
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~e 77 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFE 77 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55668888888999888888887777765542 246778888888888887776543
No 90
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=47.64 E-value=48 Score=26.08 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 018954 221 LADKQAALEKSQWEAMTVSRKAEKLQEEVESMQ 253 (348)
Q Consensus 221 LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~ 253 (348)
+.+++--|+.|+.||..=.-.+|.++-+|..|.
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 444555555555555444444444444444443
No 91
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=47.58 E-value=1.4e+02 Score=25.97 Aligned_cols=18 Identities=11% Similarity=0.300 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 018954 303 MEEAREAYITAVAMAKEK 320 (348)
Q Consensus 303 mE~aR~aY~aAvaaAKen 320 (348)
++.++..|..+|.++-..
T Consensus 188 ~~~a~~~Y~~~v~~~n~~ 205 (305)
T 2efl_A 188 AEDSKADYSSILQKFNHE 205 (305)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567888888888887543
No 92
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=47.15 E-value=41 Score=32.57 Aligned_cols=48 Identities=23% Similarity=0.256 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS 231 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKl 231 (348)
+++.++..+|.+|+++..+.+..|+.++.++.+.+.+|.+.+..--+|
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888888877777766665555444443
No 93
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=45.96 E-value=56 Score=24.08 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHH
Q 018954 224 KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 264 (348)
Q Consensus 224 KqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe 264 (348)
|..-.+.|+-++..=......|...++.++.||..|..+|.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445566667777777778888888888888888877764
No 94
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=45.38 E-value=2.1e+02 Score=28.60 Aligned_cols=102 Identities=15% Similarity=0.203 Sum_probs=59.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhHHHHHHHh
Q 018954 147 VSEKEIEELVALREQVEDLQRKMFEKDELLKSLESSK---------------SQVNAVHLKLDELKRLAAEKDSLIKSTQ 211 (348)
Q Consensus 147 ~~~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~---------------~em~a~~akvDELr~qlaeKe~likStq 211 (348)
++...+--+..|++.|+++++.-.+=....+.+-... +-...|..+|..|++-|.+.=-.|+.+|
T Consensus 61 ~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq 140 (390)
T 1deq_A 61 VDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQ 140 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445555677788888888777766666665554441 2223455556666666666656666666
Q ss_pred HHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHH-----HHHHHHhhhh
Q 018954 212 LQLSDAKIKLADKQAALEKSQWEAMTVSRKAE-----KLQEEVESMQ 253 (348)
Q Consensus 212 ~QLsdaki~LadKqAaLEKlewEa~tsn~Kve-----~LQ~dl~sm~ 253 (348)
.-|.+..+++--..-++ ++..+.||+. +++.|+..-+
T Consensus 141 ~~l~~q~~kiqRLE~~I-----d~c~~~C~~sC~~~l~~~vD~e~ye 182 (390)
T 1deq_A 141 KNVRDQLVDMKRLEVDI-----DIKIRSCKGSCSRALEHKVDLEDYK 182 (390)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHhcccccccchhhhhhccHHHHH
Confidence 66666555544444333 5666666653 3444554443
No 95
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=44.12 E-value=1.4e+02 Score=25.00 Aligned_cols=84 Identities=12% Similarity=0.144 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHH-----------HHHHhhhHHHHHHHHHhh
Q 018954 183 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQW-----------EAMTVSRKAEKLQEEVES 251 (348)
Q Consensus 183 ~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlew-----------Ea~tsn~Kve~LQ~dl~s 251 (348)
...+..++..-+.|...+.+|...+..+ .+++.-...+.+-..=|+..+- .|..--+|.+.++.||..
T Consensus 80 ~~~~~~l~~~W~~L~~~~~~R~~~L~~a-~~~~~F~~~~~e~~~Wl~ek~~~l~~~~g~dl~~v~~l~~~h~~~e~dL~~ 158 (218)
T 3edu_A 80 AEWKDGLNEMWADLLELIDTRMQLLAAS-YDLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERELHL 158 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCC-------------CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555556665565555555544 2333333333333222222111 122223456667777777
Q ss_pred hhhhHHHHHHHHHHhh
Q 018954 252 MQGEMSSFMQIFEGLI 267 (348)
Q Consensus 252 m~~EIsslm~~fe~it 267 (348)
.+..|.+|...-+.|.
T Consensus 159 ~~~~v~~l~~~a~~L~ 174 (218)
T 3edu_A 159 LGVQVQQFQDVATRLQ 174 (218)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777766666
No 96
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=43.82 E-value=34 Score=27.53 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHh
Q 018954 224 KQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGL 266 (348)
Q Consensus 224 KqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~i 266 (348)
..-|++-++.-+..-+...++|+.++..+...|..+...++.+
T Consensus 86 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 86 FEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666677777777777777777777666554
No 97
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=43.74 E-value=1.3e+02 Score=24.56 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHH
Q 018954 187 NAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWE 234 (348)
Q Consensus 187 ~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewE 234 (348)
..+..+++.|..++++.+.=+.-++.+|.+.+....+-...+.+++-|
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~E 55 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKE 55 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555544444445544444444444444444444444
No 98
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=43.60 E-value=1.1e+02 Score=23.66 Aligned_cols=13 Identities=15% Similarity=0.498 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 018954 184 SQVNAVHLKLDEL 196 (348)
Q Consensus 184 ~em~a~~akvDEL 196 (348)
+++..+...+.++
T Consensus 31 ~~i~~l~~~l~~l 43 (112)
T 1l8d_A 31 NKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3344444444433
No 99
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=43.35 E-value=61 Score=26.03 Aligned_cols=37 Identities=11% Similarity=0.274 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018954 158 LREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLA 200 (348)
Q Consensus 158 LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~ql 200 (348)
=+||+..|+++| +..+..-+.+|..++.+|+..++.+
T Consensus 38 ekEqL~~LKkkl------~~el~~h~~ei~~le~~i~rhk~~i 74 (84)
T 1gmj_A 38 AKEQLAALKKHK------ENEISHHAKEIERLQKEIERHKQSI 74 (84)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665 3344444555555555555544444
No 100
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=43.01 E-value=96 Score=22.70 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 018954 179 LESSKSQVNAVHLKLDELKRLAAE 202 (348)
Q Consensus 179 ae~~~~em~a~~akvDELr~qlae 202 (348)
+.++.++|..|..+||.|...+..
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~a 29 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANA 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677888888888888876653
No 101
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=42.54 E-value=1.2e+02 Score=23.64 Aligned_cols=39 Identities=8% Similarity=0.043 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhh
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLA 222 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~La 222 (348)
.++.-++..++.+|..+-+=-.+-.++...+..-+..+-
T Consensus 21 ~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD 59 (86)
T 3swk_A 21 VERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 444445555555555555544444555555554444443
No 102
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=41.71 E-value=93 Score=23.94 Aligned_cols=15 Identities=20% Similarity=0.627 Sum_probs=12.6
Q ss_pred hhhhhHHHHHHHHHH
Q 018954 251 SMQGEMSSFMQIFEG 265 (348)
Q Consensus 251 sm~~EIsslm~~fe~ 265 (348)
.++.||++.++++++
T Consensus 44 ~Le~EIatYRkLLEG 58 (74)
T 2xv5_A 44 ALDMEIHAYRKLLEG 58 (74)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 478999999999875
No 103
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=41.48 E-value=49 Score=28.76 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=9.4
Q ss_pred hHHhhHHHHhhhhHHHHHHHH
Q 018954 211 QLQLSDAKIKLADKQAALEKS 231 (348)
Q Consensus 211 q~QLsdaki~LadKqAaLEKl 231 (348)
+.+|.+++..+...++.|+.+
T Consensus 97 ~~~~~~a~~~~~~a~a~l~~a 117 (277)
T 2f1m_A 97 KQEYDQALADAQQANAAVTAA 117 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 104
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=41.12 E-value=1.2e+02 Score=23.36 Aligned_cols=45 Identities=9% Similarity=0.189 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 223 DKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 223 dKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
++.-+++.|+-..-.-...+++|+..+..++.++..+...+..+-
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544455555666666666666666666666555543
No 105
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=39.89 E-value=3.1e+02 Score=27.75 Aligned_cols=31 Identities=3% Similarity=0.136 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhHHhhH
Q 018954 186 VNAVHLKLDELKRLAAEKDSLIKSTQLQLSD 216 (348)
Q Consensus 186 m~a~~akvDELr~qlaeKe~likStq~QLsd 216 (348)
|++++..+..-++++-+.|.+|+--...|.+
T Consensus 118 v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~ 148 (461)
T 3ghg_B 118 MYLLKDLWQKRQKQVKDNENVVNEYSSELEK 148 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHhccccCCCCcchhHHHHHHHHHHH
Confidence 3444444444445555555555544444443
No 106
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=39.63 E-value=2.5e+02 Score=26.54 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q 018954 302 RMEEAREAYITAVA 315 (348)
Q Consensus 302 kmE~aR~aY~aAva 315 (348)
+++.|+.+|..|+.
T Consensus 464 ~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 464 ALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHhcccHHHHHHH
Confidence 45555556655553
No 107
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=38.51 E-value=2e+02 Score=25.02 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q 018954 156 VALREQVEDLQRKMFEK 172 (348)
Q Consensus 156 ~~LreQVeeLqkKL~EK 172 (348)
..+.+||..|+.+|-|-
T Consensus 73 d~yEeqIk~L~~kLKEA 89 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEA 89 (155)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444455554444443
No 108
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=38.12 E-value=3.6e+02 Score=27.97 Aligned_cols=24 Identities=29% Similarity=0.381 Sum_probs=14.5
Q ss_pred HHhhHHHHhhhhHHHHHHHHHHHH
Q 018954 212 LQLSDAKIKLADKQAALEKSQWEA 235 (348)
Q Consensus 212 ~QLsdaki~LadKqAaLEKlewEa 235 (348)
+-...|++.|.++||++-++--|.
T Consensus 395 ~~~~~~~~dv~~~~a~~d~~~~~~ 418 (551)
T 2b5u_A 395 LKAQRAQTDVNNKQAAFDAAAKEK 418 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhHHHHHHHHhhcc
Confidence 444556667777777776664443
No 109
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=37.43 E-value=1.4e+02 Score=23.15 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHH
Q 018954 186 VNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAM 236 (348)
Q Consensus 186 m~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~ 236 (348)
|..++.+|+.+...=+.=+.-|..++..+.+-|.+.-+=.+.-..+|-++.
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~ 52 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQ 52 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554444333444444555555555555544444444444443
No 110
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=36.98 E-value=36 Score=24.78 Aligned_cols=36 Identities=8% Similarity=0.200 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHH
Q 018954 226 AALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQ 261 (348)
Q Consensus 226 AaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~ 261 (348)
.-++.||-++..=...-..|+.++..++.|+..|..
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444344444444444444444444433
No 111
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=36.71 E-value=1.4e+02 Score=22.74 Aligned_cols=23 Identities=22% Similarity=0.409 Sum_probs=10.2
Q ss_pred HHHHHhhhHHHHHHHHHhhhhhh
Q 018954 233 WEAMTVSRKAEKLQEEVESMQGE 255 (348)
Q Consensus 233 wEa~tsn~Kve~LQ~dl~sm~~E 255 (348)
-++..-.++.+.++..+..++..
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 112
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=36.69 E-value=1.4e+02 Score=24.55 Aligned_cols=18 Identities=11% Similarity=0.230 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018954 184 SQVNAVHLKLDELKRLAA 201 (348)
Q Consensus 184 ~em~a~~akvDELr~qla 201 (348)
++|..|++.++.||..|.
T Consensus 75 ~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 75 EDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666665543
No 113
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=36.55 E-value=3.8e+02 Score=27.79 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHH
Q 018954 174 ELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQ 232 (348)
Q Consensus 174 elLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKle 232 (348)
.+=+.+|....||+.+.+-+.+.+..++.-..+|.|..+.|..|-..|++-.|..-...
T Consensus 318 ~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~ 376 (551)
T 2b5u_A 318 AAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFN 376 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhh
Confidence 34455777788888887777777776666678888888888888888888777665533
No 114
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=35.95 E-value=1.1e+02 Score=21.47 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHH
Q 018954 186 VNAVHLKLDELKRLAAEKDSLIKST 210 (348)
Q Consensus 186 m~a~~akvDELr~qlaeKe~likSt 210 (348)
.+.++..++++...+.++.+.+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKA 31 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333333
No 115
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=35.58 E-value=88 Score=23.01 Aligned_cols=41 Identities=24% Similarity=0.303 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018954 150 KEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLA 200 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~ql 200 (348)
+-+++...|..++++|..+-. .+..+|+.+...+..|+..+
T Consensus 20 KKk~~~~~le~~~~~L~~~N~----------~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEKKNE----------ALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 555666667777666665432 23344445555555555444
No 116
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=35.45 E-value=2.2e+02 Score=24.72 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh
Q 018954 183 KSQVNAVHLKLDELKRLAAEKDSLIKSTQLQL 214 (348)
Q Consensus 183 ~~em~a~~akvDELr~qlaeKe~likStq~QL 214 (348)
..++......|+-.|+.+-.+-.-+..++..+
T Consensus 129 ~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~ 160 (305)
T 2efl_A 129 QQHIETCWKQLESSKRRFERDCKEADRAQQYF 160 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544444444444433
No 117
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=34.82 E-value=92 Score=30.25 Aligned_cols=53 Identities=11% Similarity=0.177 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIK 208 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~lik 208 (348)
++..|+.+.+.+.+++-.|.. +.++.++.++..+..+|.+|..++.+.+.-+.
T Consensus 43 ~~~~l~~~~n~~sk~i~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 43 RLQEVQTERNQVAKRVPKAPP--EEKEALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHSSSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433221 22344445555555555555555544444443
No 118
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=34.43 E-value=97 Score=29.71 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018954 156 VALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAE 202 (348)
Q Consensus 156 ~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlae 202 (348)
..|+++|..|+..|...++.++.++ +.+..++++|++|+.+|.+
T Consensus 8 ~~~~~~~~~~e~~i~~~~~~i~~L~---~~l~~~~~~i~~l~~~i~~ 51 (323)
T 1lwu_C 8 QKILEEVRILEQIGVSHDAQIQELS---EMWRVNQQFVTRLQQQLVD 51 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666655554443 3334455666666555543
No 119
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=33.92 E-value=1.1e+02 Score=24.30 Aligned_cols=11 Identities=18% Similarity=0.474 Sum_probs=5.8
Q ss_pred HHHHHHHHHHH
Q 018954 159 REQVEDLQRKM 169 (348)
Q Consensus 159 reQVeeLqkKL 169 (348)
++||..|+.-+
T Consensus 16 ~~ql~~l~~~~ 26 (95)
T 2c5k_T 16 KEQLNRINNYI 26 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45555555544
No 120
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=33.90 E-value=3.5e+02 Score=26.59 Aligned_cols=114 Identities=12% Similarity=0.010 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhh
Q 018954 145 ALVSEKEIEELVALREQVEDLQRKMFEKDE---------LLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLS 215 (348)
Q Consensus 145 ~~~~~kd~eEl~~LreQVeeLqkKL~EKDe---------lLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLs 215 (348)
++-.+-....+..+...|++++..|..-|. +|+.-..+..+|.+...+|+.|..+...+.
T Consensus 1 ~~~~~~~~r~v~dl~~Wl~E~~~~L~S~d~GkDL~sVe~LLqKH~~lE~eI~a~~~~v~~l~~~a~~~~----------- 69 (450)
T 3r6n_A 1 SGWDEFTKHVTSECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKADLREKS----------- 69 (450)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-----------
T ss_pred CCcchhhhccHHHHHHHHHHHHHhcCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH-----------
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhhhcCCCC
Q 018954 216 DAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKNDSTV 273 (348)
Q Consensus 216 daki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it~N~S~~ 273 (348)
.+...+...+.|.--+..+-.+.+.|+.=+..++-|++|+...-+-+...+-++
T Consensus 70 ----~~~~L~~~y~~L~~~a~~Rr~~Le~L~qFl~d~~ee~~Wi~EKe~~~~s~d~gd 123 (450)
T 3r6n_A 70 ----AIYQLEEEYENLLKASFERMDHLRQLQNIIQATSREIMWINDCEEEELLYDWSD 123 (450)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCST
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc
No 121
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=33.06 E-value=2.4e+02 Score=24.45 Aligned_cols=50 Identities=14% Similarity=0.251 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-----HHHHHHHhHHhhHHHHhhhhHHHHHHH
Q 018954 181 SSKSQVNAVHLKLDELKRLAAEK-----DSLIKSTQLQLSDAKIKLADKQAALEK 230 (348)
Q Consensus 181 ~~~~em~a~~akvDELr~qlaeK-----e~likStq~QLsdaki~LadKqAaLEK 230 (348)
.+.+.+..|+-.|+.||+-|+.+ -..+++++..+..|...|..++.-+..
T Consensus 25 ~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ 79 (141)
T 3okq_A 25 TLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDT 79 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777777777664 567788888888888888887776654
No 122
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=32.80 E-value=2.1e+02 Score=23.69 Aligned_cols=33 Identities=9% Similarity=0.081 Sum_probs=13.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHH
Q 018954 230 KSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQI 262 (348)
Q Consensus 230 KlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~ 262 (348)
.+++|..-.++-++.+.-..+.+++++..|..+
T Consensus 48 ql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~ 80 (103)
T 4h22_A 48 ESRRQYEEKNKEFEREKHAHSILQFQFAEVKEA 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444433
No 123
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=32.11 E-value=1.2e+02 Score=27.97 Aligned_cols=44 Identities=9% Similarity=0.196 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018954 156 VALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAE 202 (348)
Q Consensus 156 ~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlae 202 (348)
..|...+..++.+|.... .+++.+..|++...+.+.+.|+++|+
T Consensus 167 ~yLa~R~~~lK~kl~~l~---~~L~~~~~e~~s~~~~~~~~~~~~~~ 210 (228)
T 3q0x_A 167 QFLAFRLSEVKGTCHDLS---DDLSRTRDDRDSMVAQLAQCRQQLAQ 210 (228)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566665544332 34566677888888888888888876
No 124
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=31.63 E-value=82 Score=23.07 Aligned_cols=30 Identities=13% Similarity=0.289 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhhhhHH
Q 018954 228 LEKSQWEAMTVSRKAEKLQEEVESMQGEMS 257 (348)
Q Consensus 228 LEKlewEa~tsn~Kve~LQ~dl~sm~~EIs 257 (348)
+.+|--.|=+=|.||..|+.|+..+..+|.
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777788888888877777776
No 125
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=31.45 E-value=3.4e+02 Score=25.70 Aligned_cols=33 Identities=12% Similarity=0.319 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLESSKSQV 186 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae~~~~em 186 (348)
-|..++++|.++++.+.-|...+..++..+...
T Consensus 310 ~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~ 342 (406)
T 4dyl_A 310 TLTSVTDELAVATEMVFRRQEMVTQLQQELRNE 342 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999998888887777666554433
No 126
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=30.96 E-value=2.5e+02 Score=25.43 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=34.8
Q ss_pred HHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 196 LKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 196 Lr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
++.++..-|.||..+++|...--.+|..|+--++.|+.++-.-+...-..+..++.-.-.|.-.--+|+-||
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LT 82 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLC 82 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHcc
Confidence 445666667777777777777777766666666666665554444444444444333333333333444444
No 127
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=30.91 E-value=71 Score=27.79 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=6.8
Q ss_pred HHHHHHHhhHHHHHH
Q 018954 195 ELKRLAAEKDSLIKS 209 (348)
Q Consensus 195 ELr~qlaeKe~likS 209 (348)
|++.+|.+.|.+++.
T Consensus 9 e~~e~L~~~e~l~~e 23 (184)
T 4egx_A 9 EAIERLKETEKIIAE 23 (184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 128
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=30.61 E-value=1.6e+02 Score=21.65 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHhHH
Q 018954 191 LKLDELKRLAAEKDSLIKSTQLQ 213 (348)
Q Consensus 191 akvDELr~qlaeKe~likStq~Q 213 (348)
.|+++|+.++..-..-++++..+
T Consensus 35 ~k~eel~~~~~~~~~~l~~~k~E 57 (77)
T 3trt_A 35 SKFADLSEAANRNNDALRQAKQE 57 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 44555555544444333333333
No 129
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=30.22 E-value=47 Score=31.73 Aligned_cols=12 Identities=8% Similarity=0.382 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 018954 158 LREQVEDLQRKM 169 (348)
Q Consensus 158 LreQVeeLqkKL 169 (348)
+|++||+..+.+
T Consensus 7 ~~~~le~~~~~i 18 (323)
T 1lwu_B 7 AQKEIENRYKEV 18 (323)
T ss_dssp CHHHHHHHTHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555554443
No 130
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=29.29 E-value=1.3e+02 Score=27.38 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhH
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLA-AEKDSLIKSTQL 212 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~ql-aeKe~likStq~ 212 (348)
.+|+..|..+|+.|+.++.+ +..+..-++|.++-+|+.. .|++.+.+....
T Consensus 58 ~~e~~~l~~~l~~l~~e~~e----------l~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e 109 (213)
T 4ani_A 58 AEELAAAKAQIAELEAKLSE----------MEHRYLRLYADFENFRRRTRQEMEAAEKYRAQ 109 (213)
T ss_dssp CCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred hhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777888888888877654 2233333445555554433 345555554443
No 131
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=29.09 E-value=2.5e+02 Score=23.41 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018954 153 EELVALREQVEDLQRKM 169 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL 169 (348)
+++..|+.+-+.+++.|
T Consensus 34 ~~v~~l~~k~~~f~~el 50 (218)
T 3edu_A 34 DHVTLLRDKFRDFARET 50 (218)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 132
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=28.78 E-value=56 Score=25.14 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHhHHh
Q 018954 191 LKLDELKRLAAEKDSLIKSTQLQL 214 (348)
Q Consensus 191 akvDELr~qlaeKe~likStq~QL 214 (348)
..|++|...+.+||..|+-++.+|
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 133
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=28.44 E-value=2.4e+02 Score=22.90 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhh
Q 018954 221 LADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGE 255 (348)
Q Consensus 221 LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~E 255 (348)
+-+....|+.+..|+..+-.=|..|++.++.++.+
T Consensus 49 ~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~ 83 (107)
T 2no2_A 49 TQEQLEVLESLKQELATSQRELQVLQGSLETSAQS 83 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666655555555555555555544
No 134
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=28.02 E-value=49 Score=31.09 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=18.4
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 232 QWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 232 ewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
++++-.-..|.++|...+...+.||..|...++.|.
T Consensus 60 ~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 60 EARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333333444445555555555555555555555544
No 135
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=27.86 E-value=2.1e+02 Score=22.19 Aligned_cols=34 Identities=29% Similarity=0.263 Sum_probs=22.3
Q ss_pred HHHHhhhhHHHHHHH-HHHHHHHhhhHHHHHHHHH
Q 018954 216 DAKIKLADKQAALEK-SQWEAMTVSRKAEKLQEEV 249 (348)
Q Consensus 216 daki~LadKqAaLEK-lewEa~tsn~Kve~LQ~dl 249 (348)
+..|..+...+.++| |.-|.+..-..|++|-+=|
T Consensus 32 eee~~~~~~k~~lek~L~~E~~LK~QAVNKLAEIM 66 (71)
T 1uix_A 32 DEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIM 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666665 7777777777777775543
No 136
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=27.72 E-value=1.7e+02 Score=22.65 Aligned_cols=10 Identities=30% Similarity=0.355 Sum_probs=0.9
Q ss_pred HHHHHHHHHH
Q 018954 192 KLDELKRLAA 201 (348)
Q Consensus 192 kvDELr~qla 201 (348)
.|+.|+.+.+
T Consensus 4 eie~L~~q~~ 13 (86)
T 1x8y_A 4 QLSQLQCQLA 13 (86)
T ss_dssp --------CT
T ss_pred hHHHHHHHHH
Confidence 3444444444
No 137
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=27.59 E-value=2.6e+02 Score=23.08 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=0.0
Q ss_pred HhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHH-------HHHHhhhhhhHHHHHHHHHHhh
Q 018954 210 TQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKL-------QEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 210 tq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~L-------Q~dl~sm~~EIsslm~~fe~it 267 (348)
+|.||..|+-.|.+..|--.---.=||+=..-.++- |..+..+++||..|-..++...
T Consensus 23 Lq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 23 LQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 138
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.55 E-value=1.2e+02 Score=30.43 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018954 174 ELLKSLESSKSQVNAVHLKLDELKR 198 (348)
Q Consensus 174 elLkSae~~~~em~a~~akvDELr~ 198 (348)
+++..++.+.++.|++.++|-.+++
T Consensus 44 ~~~~~~~~l~~~rn~~sk~i~~~k~ 68 (485)
T 3qne_A 44 KLRFDLDEHNKKLNSVQKEIGKRFK 68 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444556666777777777766654
No 139
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.51 E-value=92 Score=22.54 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018954 153 EELVALREQVEDLQRKM 169 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL 169 (348)
.|+-+|+.++++||.|+
T Consensus 19 ~d~eaLk~E~~eLk~k~ 35 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKY 35 (53)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 35666666666666543
No 140
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=27.43 E-value=1.6e+02 Score=22.76 Aligned_cols=16 Identities=25% Similarity=0.123 Sum_probs=5.8
Q ss_pred HHHHHHHHHhhHHHHH
Q 018954 193 LDELKRLAAEKDSLIK 208 (348)
Q Consensus 193 vDELr~qlaeKe~lik 208 (348)
|++|...|++-...|.
T Consensus 30 IeeLn~~v~~Qq~~Id 45 (78)
T 3efg_A 30 LTELSEALADARLTGA 45 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 141
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.42 E-value=71 Score=23.15 Aligned_cols=10 Identities=20% Similarity=0.162 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 018954 189 VHLKLDELKR 198 (348)
Q Consensus 189 ~~akvDELr~ 198 (348)
+.++++||+.
T Consensus 38 L~~~~~el~~ 47 (53)
T 2yy0_A 38 IVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 142
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=27.29 E-value=90 Score=22.30 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 018954 153 EELVALREQVEDLQRKMFE 171 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~E 171 (348)
-|+..-++||.+||+||-+
T Consensus 16 rEI~Kte~kI~~lqkKlke 34 (42)
T 2l5g_B 16 REITMVEQQISKLKKKQQQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666544
No 143
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=27.19 E-value=3.3e+02 Score=27.29 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018954 179 LESSKSQVNAVHLKLDELKR 198 (348)
Q Consensus 179 ae~~~~em~a~~akvDELr~ 198 (348)
++.+.++-|++.++|-.+++
T Consensus 86 ~~~l~~~rn~~sk~i~~~~~ 105 (501)
T 1wle_A 86 IRSLEEEKEAVTEAVRALVV 105 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44455555555555555443
No 144
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=26.86 E-value=5.1e+02 Score=26.24 Aligned_cols=25 Identities=8% Similarity=0.199 Sum_probs=12.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 243 EKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 243 e~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
..||.-+.++...|..|...+..+.
T Consensus 166 ~~l~~~~~~~~~~i~~l~~~~~~~~ 190 (461)
T 3ghg_B 166 RVLRSILENLRSKIQKLESDVSAQM 190 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444555555555554444444443
No 145
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=26.09 E-value=1.8e+02 Score=20.79 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHH
Q 018954 226 AALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFE 264 (348)
Q Consensus 226 AaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe 264 (348)
|=|.-||-.++.-.+|..+|.+.++-++.|=..|++++.
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 446678888888889999999999999999888887764
No 146
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=26.06 E-value=1.4e+02 Score=24.59 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHH---HHHHhhhHHHHHHH
Q 018954 154 ELVALREQVEDL---QRKMFEKDELLKSL 179 (348)
Q Consensus 154 El~~LreQVeeL---qkKL~EKDelLkSa 179 (348)
++..|..++..| +.++.|=..+|.++
T Consensus 24 ~~~~l~~~~~~L~~a~~~~~e~~~~l~~l 52 (151)
T 2zdi_C 24 QAQILAQNLELLNLAKAEVQTVRETLENL 52 (151)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 44444444444433
No 147
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=25.74 E-value=2.9e+02 Score=23.00 Aligned_cols=16 Identities=38% Similarity=0.601 Sum_probs=1.3
Q ss_pred hhHHHHHHHHHhhhhh
Q 018954 239 SRKAEKLQEEVESMQG 254 (348)
Q Consensus 239 n~Kve~LQ~dl~sm~~ 254 (348)
+.++.+||+|=+++.+
T Consensus 90 ~~eL~rLQ~eNd~L~G 105 (112)
T 1x79_B 90 SEELVRLQKDNDSLQG 105 (112)
T ss_dssp HTC-------------
T ss_pred HHHHHHHHhhccchhh
Confidence 4444666666665554
No 148
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=24.86 E-value=1.1e+02 Score=26.53 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHH
Q 018954 157 ALREQVEDLQRKMFEKDELLKS 178 (348)
Q Consensus 157 ~LreQVeeLqkKL~EKDelLkS 178 (348)
.|..+|+.|.+.|..|+-.|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~ 25 (198)
T 4ghu_A 4 LLESQLSRHDQMLSVHDIRLAD 25 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 149
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=24.51 E-value=2.4e+02 Score=22.97 Aligned_cols=21 Identities=38% Similarity=0.415 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 018954 150 KEIEELVALREQVEDLQRKMF 170 (348)
Q Consensus 150 kd~eEl~~LreQVeeLqkKL~ 170 (348)
+--.|+..|++++.+|+++|-
T Consensus 15 ~~e~e~~~l~~~~~el~~~l~ 35 (125)
T 1joc_A 15 KGEGEIEKLQTKVLELQRKLD 35 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHH
Confidence 334478888888888888883
No 150
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=24.09 E-value=1.4e+02 Score=29.39 Aligned_cols=65 Identities=9% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHH
Q 018954 153 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDA 217 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsda 217 (348)
++...|+.+++.||.+--+--..+..+.....+..++.+++.+|+.++.+-+.-+..++.+|.+.
T Consensus 38 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 38 TEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 151
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=23.96 E-value=94 Score=22.33 Aligned_cols=27 Identities=15% Similarity=0.422 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHHH
Q 018954 239 SRKAEKLQEEVESMQGEMSSFMQIFEG 265 (348)
Q Consensus 239 n~Kve~LQ~dl~sm~~EIsslm~~fe~ 265 (348)
..||++|+.-|+.|+.-+..|+.-|..
T Consensus 4 Eekv~~Le~~ld~LqTr~ArLlae~~s 30 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQTRFARLLAEYNA 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888898888888888877743
No 152
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=23.87 E-value=3.1e+02 Score=22.63 Aligned_cols=30 Identities=20% Similarity=0.209 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 018954 176 LKSLESSKSQVNAVHLKLDELKRLAAEKDS 205 (348)
Q Consensus 176 LkSae~~~~em~a~~akvDELr~qlaeKe~ 205 (348)
.+.+..-.++|..+.++||+||.+-.+|=+
T Consensus 64 yE~LQDkL~qi~eAR~ALdaLR~eH~~Klr 93 (98)
T 3f1i_H 64 YEGLQDKLAQIRDARGALSALREEHREKLR 93 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334446888889999999988877743
No 153
>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Homo sapiens} SCOP: a.194.1.1
Probab=23.86 E-value=1.5e+02 Score=23.89 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhH--------HHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 018954 162 VEDLQRKMFEKD--------ELLKSLESS--KSQVNAVHLKLDELKRLAA 201 (348)
Q Consensus 162 VeeLqkKL~EKD--------elLkSae~~--~~em~a~~akvDELr~qla 201 (348)
+|.||.||.||. ++|+++=++ -++|-.++.-|-+||-||.
T Consensus 9 leRLQ~KL~erGd~s~~ekLs~lk~~LqSPLF~qILtlQqSikqLk~Qvn 58 (83)
T 1vf6_A 9 LDRLKMKLQEKGDTSQNEKLSMFYETLKSPLFNQILTLQQSIKQLKGQLN 58 (83)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccchHhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence 689999998764 566665554 4999999999999999886
No 154
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.74 E-value=1.8e+02 Score=27.78 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhHHhhH
Q 018954 189 VHLKLDELKRLAAEKDSLIKSTQLQLSD 216 (348)
Q Consensus 189 ~~akvDELr~qlaeKe~likStq~QLsd 216 (348)
+..+|..|...|...+.-|+.++.+|..
T Consensus 10 ~~~~~~~~e~~i~~~~~~i~~L~~~l~~ 37 (323)
T 1lwu_C 10 ILEEVRILEQIGVSHDAQIQELSEMWRV 37 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 155
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=23.68 E-value=83 Score=25.64 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 018954 305 EAREAYITAVAMAKEKQDEESMATAARARLHL 336 (348)
Q Consensus 305 ~aR~aY~aAvaaAKenp~eEsl~~aAeaR~~L 336 (348)
.||..|+.|+.+||+.--++.=....+|+..|
T Consensus 19 ~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~~l 50 (105)
T 2e2a_A 19 DARSKLLEALKAAENGDFAKADSLVVEAGSCI 50 (105)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 68999999999999997777666666666544
No 156
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=23.46 E-value=75 Score=21.72 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 239 SRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 239 n~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
..||+.|-.+-+.++.|+..|..++
T Consensus 6 E~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 6 EAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4799999999999999999888765
No 157
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.24 E-value=83 Score=22.50 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018954 182 SKSQVNAVHLKLDELKR 198 (348)
Q Consensus 182 ~~~em~a~~akvDELr~ 198 (348)
..++|+.++.++.+|..
T Consensus 21 te~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 21 VEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666666666643
No 158
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=22.99 E-value=2.4e+02 Score=22.73 Aligned_cols=26 Identities=12% Similarity=0.192 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH
Q 018954 180 ESSKSQVNAVHLKLDELKRLAAEKDS 205 (348)
Q Consensus 180 e~~~~em~a~~akvDELr~qlaeKe~ 205 (348)
+-+.++-.++...+--+++++++|++
T Consensus 67 eRL~~dF~~l~~~fQ~~qr~y~ek~~ 92 (97)
T 1hs7_A 67 GKLSADFKNLKTKYQSLQQSYNQRKS 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455666666666666677776654
No 159
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=22.96 E-value=1.1e+02 Score=24.76 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=1.5
Q ss_pred HHHHHHHHHHHH
Q 018954 158 LREQVEDLQRKM 169 (348)
Q Consensus 158 LreQVeeLqkKL 169 (348)
|..+|+.|++.|
T Consensus 4 l~~~~~~l~~~~ 15 (182)
T 3kqg_A 4 LNAQIPELKSDL 15 (182)
T ss_dssp ---------CHH
T ss_pred hhhhHHHHHHHH
Confidence 455666666544
No 160
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=22.72 E-value=1e+02 Score=21.09 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 239 SRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 239 n~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
..|||+|=..-..++.||..|..++
T Consensus 6 EdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 6 EDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 5789999999999999999888765
No 161
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=22.65 E-value=90 Score=25.36 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 018954 305 EAREAYITAVAMAKEKQDEESMATAARARLHL 336 (348)
Q Consensus 305 ~aR~aY~aAvaaAKenp~eEsl~~aAeaR~~L 336 (348)
.||..|+.|+.+||+.--++.=....+|+..|
T Consensus 17 ~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~~l 48 (103)
T 1wcr_A 17 QARSLAYAALKQAKQGDFAAAKAMMDQSRMAL 48 (103)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 68999999999999998777766666666554
No 162
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=22.53 E-value=6.2e+02 Score=25.66 Aligned_cols=123 Identities=11% Similarity=0.132 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHhhHHHHHHH
Q 018954 153 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNA----------------------VHLKLDELKRLAAEKDSLIKST 210 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a----------------------~~akvDELr~qlaeKe~likSt 210 (348)
+++..|..+.+.++..|.....-+.++..+..++.. +...-++|.....+|...++.+
T Consensus 518 ~~ve~ll~kh~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~rw~~L~~~~~~R~~~L~~~ 597 (863)
T 1sjj_A 518 EEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEE 597 (863)
T ss_dssp GGGHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCSCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h--------------HHhhHHHHhhhhHHHHHHHHHHH----HHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhhhcCCC
Q 018954 211 Q--------------LQLSDAKIKLADKQAALEKSQWE----AMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLIKNDST 272 (348)
Q Consensus 211 q--------------~QLsdaki~LadKqAaLEKlewE----a~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it~N~S~ 272 (348)
. ....+..-=|.++...|....++ +-.--+++..++.++..++.+|..+..+-+.|.+....
T Consensus 598 l~~~~~~~~l~~~F~~~a~~~~~Wi~e~e~~l~~~~~~~~~~le~~l~~~~~~~~el~~~~~~i~~l~~l~~~L~~~~~~ 677 (863)
T 1sjj_A 598 HARQQQNERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQQIQEALIF 677 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCTTTSSHHHHHHHHHHHHHHHTTGGGHHHHHHHHHHHHTTTCC
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC
Q ss_pred CCC
Q 018954 273 VNA 275 (348)
Q Consensus 273 ~~~ 275 (348)
..+
T Consensus 678 ~~~ 680 (863)
T 1sjj_A 678 DNK 680 (863)
T ss_dssp CCT
T ss_pred CCC
No 163
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=22.19 E-value=4.1e+02 Score=23.46 Aligned_cols=24 Identities=4% Similarity=0.213 Sum_probs=12.7
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHh
Q 018954 243 EKLQEEVESMQGEMSSFMQIFEGL 266 (348)
Q Consensus 243 e~LQ~dl~sm~~EIsslm~~fe~i 266 (348)
+.|+.++..++..|..+.....++
T Consensus 66 ~~Le~~~~~L~~~i~~l~~~~~k~ 89 (174)
T 2p22_A 66 QAIEQTMHSLNAQIDVLTANRAKV 89 (174)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666665544343
No 164
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=22.06 E-value=4.1e+02 Score=25.52 Aligned_cols=88 Identities=11% Similarity=0.207 Sum_probs=54.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 018954 170 FEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEV 249 (348)
Q Consensus 170 ~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl 249 (348)
..+.-+|..++.+.+.++.++..|+.++..+... |++.=.++-..=..+|+....+-+. +........++|..+-
T Consensus 64 ~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~---i~~~V~~iN~l~~qIa~LN~qI~~~--~~~~~g~~~ndLlDqR 138 (463)
T 2d4y_A 64 AARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIA---IGSSVAQINNYAKQIANLNDQISRM--TGVGAGASPNDLLDQR 138 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH--C--------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh--hccCCCCCchHhHHHH
Confidence 3466788889999999999999999999877543 4444444444333444444333222 1111246788899999
Q ss_pred hhhhhhHHHHHHH
Q 018954 250 ESMQGEMSSFMQI 262 (348)
Q Consensus 250 ~sm~~EIsslm~~ 262 (348)
+.+-.|+|.++-+
T Consensus 139 D~ll~eLS~~v~v 151 (463)
T 2d4y_A 139 DQLVSELNKIVGV 151 (463)
T ss_dssp HHHHHHHHHHSCE
T ss_pred HHHHHHHHhhcCe
Confidence 9988888887643
No 165
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=22.03 E-value=2.9e+02 Score=21.72 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=18.0
Q ss_pred HHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 018954 209 STQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEE 248 (348)
Q Consensus 209 Stq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~d 248 (348)
.|+.+|..-+.+|-++ +.+|+.|-..-.+-++.|+..
T Consensus 32 rT~~EL~~G~~KL~~m---i~~l~~E~~~l~~ni~~lk~K 68 (78)
T 3iv1_A 32 RTEEDLKKGHQKLEEM---VTRLDQEVAEVDKNIELLKKK 68 (78)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666666543 344444443333334433333
No 166
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=21.43 E-value=29 Score=31.76 Aligned_cols=26 Identities=8% Similarity=0.087 Sum_probs=5.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHhhhHHH
Q 018954 218 KIKLADKQAALEKSQWEAMTVSRKAE 243 (348)
Q Consensus 218 ki~LadKqAaLEKlewEa~tsn~Kve 243 (348)
+.+|.++++-+...+=|+..+.+=+.
T Consensus 168 e~~Ie~Lk~e~~e~~te~~p~~k~~~ 193 (250)
T 2ve7_C 168 LMKLERLEKEVDEDTTVTIPSAVYVA 193 (250)
T ss_dssp HHSCC-------------CTTTHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 33344444444444444444433333
No 167
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=21.20 E-value=67 Score=29.38 Aligned_cols=69 Identities=13% Similarity=0.186 Sum_probs=31.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHH
Q 018954 162 VEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMT 237 (348)
Q Consensus 162 VeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~t 237 (348)
+......+.+-++++...+++..+.+++.++|+.|++++.+ .+-++---++-++..-.-+-|++|+.-+
T Consensus 140 ~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e-------~~te~~p~~k~~~qly~~vt~i~w~~~~ 208 (250)
T 2ve7_C 140 RETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDE-------DTTVTIPSAVYVAQLYHQVSKIEWEYEC 208 (250)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC--------------------CTTTHHHHHHHHHHHCCEECSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhhhhhHHHHHHHHHHHHHhhceeeccc
Confidence 33444444555555555666666666666666666655432 2222222234455556667777776544
No 168
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=21.17 E-value=4.1e+02 Score=23.09 Aligned_cols=108 Identities=15% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHH
Q 018954 153 EELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQ 232 (348)
Q Consensus 153 eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKle 232 (348)
+.|..+....+...|++.+ .......++......++..|+.+-..-.-+.+++.....++....--++-|+|++
T Consensus 98 ~~l~~~~~~~~~~rK~~~~------~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a~~~~~~s~~~~eK~~ 171 (301)
T 2efk_A 98 LELTKYSQEMKQERKMHFQ------EGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAK 171 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCHHHHHHHH
Q ss_pred HHHHHhhhHHHHHHHH------------HhhhhhhHHHHHHHHHHh
Q 018954 233 WEAMTVSRKAEKLQEE------------VESMQGEMSSFMQIFEGL 266 (348)
Q Consensus 233 wEa~tsn~Kve~LQ~d------------l~sm~~EIsslm~~fe~i 266 (348)
--+.....++++..++ -..-..++..+...|+.+
T Consensus 172 ~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~p~~~~~lQ~l 217 (301)
T 2efk_A 172 QQAHLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDM 217 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 169
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=20.59 E-value=5.4e+02 Score=24.27 Aligned_cols=72 Identities=11% Similarity=0.101 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHH----HHHHHHHHHHhhhHHHHHHH
Q 018954 172 KDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAA----LEKSQWEAMTVSRKAEKLQE 247 (348)
Q Consensus 172 KDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAa----LEKlewEa~tsn~Kve~LQ~ 247 (348)
|+.+...++.+.++++..+.+++.+...|.+ =+..|..-+.+ ...|+--+...+..+..||.
T Consensus 118 ~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~--------------F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~ 183 (346)
T 2nrj_A 118 GETLKEGITDLRGEIQQNQKYAQQLIEELTK--------------LRDSIGHDVRAFGSNKELLQSILKNQGADVDADQK 183 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHH
Confidence 4455555555555555555555555554433 22222221111 12233333444555566666
Q ss_pred HHhhhhhhHH
Q 018954 248 EVESMQGEMS 257 (348)
Q Consensus 248 dl~sm~~EIs 257 (348)
+++.++.+|.
T Consensus 184 eI~~l~~~I~ 193 (346)
T 2nrj_A 184 RLEEVLGSVN 193 (346)
T ss_dssp HHHHHTGGGC
T ss_pred HHHHHHHHHH
Confidence 6666666664
No 170
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.55 E-value=6.4e+02 Score=25.12 Aligned_cols=109 Identities=16% Similarity=0.118 Sum_probs=63.8
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHh
Q 018954 141 FSSRALVSEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIK 220 (348)
Q Consensus 141 ~~s~~~~~~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~ 220 (348)
|+.=-+..-.++.| .-+.-.|++|+..|. .+-++-.++-.-++.+...+-+-.+++.+-|-.+--.-.+|....+-
T Consensus 49 PsGCrLqg~Ldk~e-r~~~~rIe~L~~~L~---~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~ 124 (390)
T 1deq_A 49 PSGCRMKGLIDEVD-QDFTSRINKLRDSLF---NYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEI 124 (390)
T ss_pred CccchHHHHHHHhh-hhHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 55433344455555 678888888887764 34445555556666666667777777777777777777777766665
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHH
Q 018954 221 LADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIF 263 (348)
Q Consensus 221 LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~f 263 (348)
|-.+-. .+++ -..-||..|.+...+|.-|-.-+
T Consensus 125 lk~~V~--~q~~--------~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 125 LRRKVI--EQVQ--------RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHH--HHhH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 544322 1222 22345555555555555444444
No 171
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=20.52 E-value=3.6e+02 Score=23.88 Aligned_cols=28 Identities=11% Similarity=-0.045 Sum_probs=17.6
Q ss_pred HHHhHHhhHHHHhhhhHHHHHHHHHHHH
Q 018954 208 KSTQLQLSDAKIKLADKQAALEKSQWEA 235 (348)
Q Consensus 208 kStq~QLsdaki~LadKqAaLEKlewEa 235 (348)
...+.+|.+-+..+-++-..+..|+.+.
T Consensus 82 l~l~~~Le~~r~~l~~~l~~~~~L~~~~ 109 (192)
T 2p22_C 82 EENFEDLHEQKDKVQALLENARILESKY 109 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666666666
No 172
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=20.48 E-value=3.8e+02 Score=22.46 Aligned_cols=82 Identities=15% Similarity=0.190 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHH----HHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHh------hhHHHHHHHHHhhh
Q 018954 183 KSQVNAVHLKLDELKR----LAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTV------SRKAEKLQEEVESM 252 (348)
Q Consensus 183 ~~em~a~~akvDELr~----qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~ts------n~Kve~LQ~dl~sm 252 (348)
.++++.|.+.++-|.. .+........+.+..|....-+.+....-+++++-...++ +..|.+++.-+..+
T Consensus 8 ~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~keL 87 (119)
T 3etw_A 8 VGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKL 87 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444432 3444455555666666666666666666666665554443 45677777777777
Q ss_pred hhhHHHHHHHHH
Q 018954 253 QGEMSSFMQIFE 264 (348)
Q Consensus 253 ~~EIsslm~~fe 264 (348)
+.+|......++
T Consensus 88 d~~ik~qekiId 99 (119)
T 3etw_A 88 EAEMEQQKAVIS 99 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777776666553
No 173
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=20.35 E-value=1.5e+02 Score=21.83 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 018954 184 SQVNAVHLKLDELKRLAAE 202 (348)
Q Consensus 184 ~em~a~~akvDELr~qlae 202 (348)
.+-..|.++|+.|+.+|.+
T Consensus 44 ~eN~~L~~ev~~Lr~~l~~ 62 (63)
T 2dgc_A 44 SKNYHLENEVARLKKLVGE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3445566677777766654
No 174
>1q1s_A Large T antigen; importin alpha/karyopherin alpha, nuclear localisation sequence (NLS) recognition, phosphorylation; 2.30A {Synthetic} PDB: 1q1t_A
Probab=20.22 E-value=38 Score=22.10 Aligned_cols=13 Identities=38% Similarity=0.733 Sum_probs=9.9
Q ss_pred CCCCCCCcccCCC
Q 018954 108 AAQSLPPKRKKDN 120 (348)
Q Consensus 108 ~~qs~~~Kkkrdp 120 (348)
..+++|+||||+.
T Consensus 11 s~~sTPPKkKrk~ 23 (26)
T 1q1s_A 11 AQHAAPPKKKRKV 23 (26)
T ss_pred ccccCCCcccccc
Confidence 4568899998873
No 175
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=20.17 E-value=1.1e+02 Score=25.12 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhh
Q 018954 305 EAREAYITAVAMAKEKQDEESMATAARARLHL 336 (348)
Q Consensus 305 ~aR~aY~aAvaaAKenp~eEsl~~aAeaR~~L 336 (348)
.||..|+.|+.+||+.--++.=....+|+..|
T Consensus 21 ~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~~~l 52 (109)
T 3k1s_A 21 NARSFAMEALQFAKQGKMAEADEAMVKAKEAI 52 (109)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 68999999999999987776666666665544
No 176
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=20.10 E-value=4.8e+02 Score=26.17 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=18.1
Q ss_pred HHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 235 AMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 235 a~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
+..-..++..|+.++..++.++..++..+=+|.
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~ 145 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLMLNVGNIL 145 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 444445555666666666666655555444444
Done!