Query 018954
Match_columns 348
No_of_seqs 26 out of 28
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 08:37:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018954.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018954hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxkc_ a.2.5.1 (C:) Prefoldin 79.7 10 0.00076 28.5 11.5 42 156-197 4-45 (133)
2 d1fxkc_ a.2.5.1 (C:) Prefoldin 75.2 2 0.00014 32.8 5.1 93 174-267 5-129 (133)
3 d1owaa_ a.7.1.1 (A:) Spectrin 50.6 31 0.0022 25.4 7.7 95 152-267 25-119 (156)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 48.8 45 0.0033 24.4 10.2 27 154-180 16-42 (107)
5 d1seta1 a.2.7.1 (A:1-110) Sery 44.5 53 0.0038 23.9 8.2 15 154-168 36-50 (110)
6 d1seta1 a.2.7.1 (A:1-110) Sery 43.4 47 0.0034 24.2 7.7 16 154-169 43-58 (110)
7 d1fxka_ a.2.5.1 (A:) Prefoldin 42.1 58 0.0042 23.7 9.8 39 160-198 5-43 (107)
8 d2efla1 a.238.1.4 (A:1-288) Fo 38.1 86 0.0062 24.5 15.9 31 184-214 125-155 (288)
9 d2ap3a1 a.24.27.1 (A:12-196) H 36.7 62 0.0045 22.5 11.4 22 155-176 57-78 (185)
10 d1vf6a_ a.194.1.1 (A:) Associa 36.5 37 0.0027 23.9 5.6 40 162-201 5-54 (58)
11 d2fcwa1 a.13.1.1 (A:216-320) a 36.4 88 0.0064 24.1 10.2 65 179-252 25-99 (105)
12 d2efla1 a.238.1.4 (A:1-288) Fo 25.7 1.4E+02 0.01 23.2 15.8 67 192-258 119-185 (288)
13 d2ap3a1 a.24.27.1 (A:12-196) H 24.5 1E+02 0.0075 21.2 14.7 21 230-250 120-140 (185)
14 d1cxzb_ a.2.6.1 (B:) Protein k 22.6 98 0.0071 23.0 6.2 27 229-255 59-85 (86)
15 d2e50a1 d.305.1.1 (A:1-222) Pr 21.2 1.4E+02 0.01 24.5 7.7 48 148-208 28-76 (222)
No 1
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=79.68 E-value=10 Score=28.52 Aligned_cols=42 Identities=10% Similarity=0.205 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018954 156 VALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELK 197 (348)
Q Consensus 156 ~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr 197 (348)
..|..|++.|+..+..=..-+..+...+++...+...|..|.
T Consensus 4 ~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~ 45 (133)
T d1fxkc_ 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQ 45 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555444555555555555555555555554
No 2
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=75.18 E-value=2 Score=32.84 Aligned_cols=93 Identities=17% Similarity=0.257 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHH---HH------------hh-----------------
Q 018954 174 ELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDA---KI------------KL----------------- 221 (348)
Q Consensus 174 elLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsda---ki------------~L----------------- 221 (348)
++...++....++..+++.++.|+..++|=+.++.+++. |.+. .+ .+
T Consensus 5 eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~-l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~vE 83 (133)
T d1fxkc_ 5 EIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD-IQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIK 83 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCCeEEEEcCCceEEEEEecCCCceEEEecCCeeee
Confidence 444555666666777777777777777776666665542 2210 00 00
Q ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 222 ADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 222 adKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
-+..-|++-++.-+..-++..++|+.++..++..|..+...++.|-
T Consensus 84 ~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~ 129 (133)
T d1fxkc_ 84 KNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0234566666666666667777777888888888877777776653
No 3
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.61 E-value=31 Score=25.36 Aligned_cols=95 Identities=16% Similarity=0.194 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHH
Q 018954 152 IEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKS 231 (348)
Q Consensus 152 ~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKl 231 (348)
.+.+..|.+.-+.|...+.++..-|..+. +.-.++..++++..-+.+|+..+.+.. . -.+..-+..
T Consensus 25 ~~~~~~l~~rw~~L~~~~~~R~~~Le~~~----~~~~F~~~~~~l~~Wl~e~e~~~~~~~---~---~d~~~~~~~---- 90 (156)
T d1owaa_ 25 QERRQEVLTRYQSFKERVAERGQKLEDSY----HLQVFKRDADDLGKWIMEKVNILTDKS---Y---EDPTNIQGK---- 90 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCSCSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHH---H---CCCSCHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcccc---c---cCHHHHHHH----
Confidence 34556666677777777777766665443 234677788888888888887776531 1 123332222
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhhHHHHHHHHHHhh
Q 018954 232 QWEAMTVSRKAEKLQEEVESMQGEMSSFMQIFEGLI 267 (348)
Q Consensus 232 ewEa~tsn~Kve~LQ~dl~sm~~EIsslm~~fe~it 267 (348)
-+|++.++.+|...+..|..+...-+.|.
T Consensus 91 -------~~~h~~l~~ei~~~~~~~~~l~~~g~~L~ 119 (156)
T d1owaa_ 91 -------YQKHQSLEAEVQTKSRLMSELEKTREERF 119 (156)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24566788888888888888888887776
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=48.78 E-value=45 Score=24.37 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 018954 154 ELVALREQVEDLQRKMFEKDELLKSLE 180 (348)
Q Consensus 154 El~~LreQVeeLqkKL~EKDelLkSae 180 (348)
++..+..|+..|...+.|=+-+|+.++
T Consensus 16 el~~~~~q~~~le~q~~E~~~vl~eL~ 42 (107)
T d1fxka_ 16 QAQAISVQKQTVEMQINETQKALEELS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 5
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=44.52 E-value=53 Score=23.92 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHH
Q 018954 154 ELVALREQVEDLQRK 168 (348)
Q Consensus 154 El~~LreQVeeLqkK 168 (348)
+...|+.+++.|+.+
T Consensus 36 ~rr~l~~~~e~l~~~ 50 (110)
T d1seta1 36 EVQELKKRLQEVQTE 50 (110)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444445555555443
No 6
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=43.40 E-value=47 Score=24.20 Aligned_cols=16 Identities=6% Similarity=0.339 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 018954 154 ELVALREQVEDLQRKM 169 (348)
Q Consensus 154 El~~LreQVeeLqkKL 169 (348)
++-.|+.+...+-+++
T Consensus 43 ~~e~l~~~rN~~sk~i 58 (110)
T d1seta1 43 RLQEVQTERNQVAKRV 58 (110)
T ss_dssp HHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 7
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=42.15 E-value=58 Score=23.73 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018954 160 EQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKR 198 (348)
Q Consensus 160 eQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~ 198 (348)
+++..++.=-.+-..+......+..+++.....++||..
T Consensus 5 e~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~ 43 (107)
T d1fxka_ 5 HQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSR 43 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333333333333334555555555666666666666554
No 8
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.07 E-value=86 Score=24.50 Aligned_cols=31 Identities=13% Similarity=0.102 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhHHh
Q 018954 184 SQVNAVHLKLDELKRLAAEKDSLIKSTQLQL 214 (348)
Q Consensus 184 ~em~a~~akvDELr~qlaeKe~likStq~QL 214 (348)
.++.....+++..++.+-..-.-+..++.++
T Consensus 125 k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~ 155 (288)
T d2efla1 125 QHIETCWKQLESSKRRFERDCKEADRAQQYF 155 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555544433333333333333
No 9
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=36.74 E-value=62 Score=22.46 Aligned_cols=22 Identities=9% Similarity=0.274 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH
Q 018954 155 LVALREQVEDLQRKMFEKDELL 176 (348)
Q Consensus 155 l~~LreQVeeLqkKL~EKDelL 176 (348)
+..+..+++.+...+......+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~ 78 (185)
T d2ap3a1 57 VKDLIKNADDRLKEFEKEEDAI 78 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444433333
No 10
>d1vf6a_ a.194.1.1 (A:) Associated tight junction protein Pals-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.50 E-value=37 Score=23.93 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhH--------HHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 018954 162 VEDLQRKMFEKD--------ELLKSLESS--KSQVNAVHLKLDELKRLAA 201 (348)
Q Consensus 162 VeeLqkKL~EKD--------elLkSae~~--~~em~a~~akvDELr~qla 201 (348)
+|.||.||.|+. ++|+++=.| -++|-.++.-|-+||.||.
T Consensus 5 leRlQ~KL~erGD~s~~ekL~~lk~~LqSPLF~qiL~lQ~SiqqLk~Qvn 54 (58)
T d1vf6a_ 5 LDRLKMKLQEKGDTSQNEKLSMFYETLKSPLFNQILTLQQSIKQLKGQLN 54 (58)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 678999997653 556665554 4999999999999999885
No 11
>d2fcwa1 a.13.1.1 (A:216-320) alpha-2-Macroglobulin receptor associated protein (RAP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.36 E-value=88 Score=24.12 Aligned_cols=65 Identities=11% Similarity=0.224 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHhhHHHH----------hhhhHHHHHHHHHHHHHHhhhHHHHHHHH
Q 018954 179 LESSKSQVNAVHLKLDELKRLAAEKDSLIKSTQLQLSDAKI----------KLADKQAALEKSQWEAMTVSRKAEKLQEE 248 (348)
Q Consensus 179 ae~~~~em~a~~akvDELr~qlaeKe~likStq~QLsdaki----------~LadKqAaLEKlewEa~tsn~Kve~LQ~d 248 (348)
+++++.|+.-...+|.-++.-=+ |+.|+..+. ...+++.-..-||--++.-+.||++|+.|
T Consensus 25 L~SlkeEL~HfE~rl~K~rH~~~---------el~ls~ek~~~~e~~g~~~~~~~~~e~~~~le~kiKk~~~kV~Kl~~d 95 (105)
T d2fcwa1 25 LEAFREELKHFEAKIEKHNHYQK---------QLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQD 95 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhhhcccchhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666554322 233333322 12445566667888899999999999999
Q ss_pred Hhhh
Q 018954 249 VESM 252 (348)
Q Consensus 249 l~sm 252 (348)
|.+-
T Consensus 96 Le~r 99 (105)
T d2fcwa1 96 LSGR 99 (105)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 12
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.71 E-value=1.4e+02 Score=23.15 Aligned_cols=67 Identities=9% Similarity=0.015 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhHHHHHHHhHHhhHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhHHH
Q 018954 192 KLDELKRLAAEKDSLIKSTQLQLSDAKIKLADKQAALEKSQWEAMTVSRKAEKLQEEVESMQGEMSS 258 (348)
Q Consensus 192 kvDELr~qlaeKe~likStq~QLsdaki~LadKqAaLEKlewEa~tsn~Kve~LQ~dl~sm~~EIss 258 (348)
.+..+.+.+.....-+......+..+.-.+...+..+++++.....+..++++++........+...
T Consensus 119 ~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~~~~~~~~~~~~~~~~K~~~k~~~~~~~~~~ 185 (288)
T d2efla1 119 DGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAED 185 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 3333334444433444444444444444444444445555544444445555555555554444443
No 13
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=24.55 E-value=1e+02 Score=21.19 Aligned_cols=21 Identities=5% Similarity=-0.080 Sum_probs=7.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHh
Q 018954 230 KSQWEAMTVSRKAEKLQEEVE 250 (348)
Q Consensus 230 KlewEa~tsn~Kve~LQ~dl~ 250 (348)
.+.............+...+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~ 140 (185)
T d2ap3a1 120 DYAKAYKKAVNSEKTLFKYLN 140 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHH
Confidence 333333333333333333333
No 14
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.55 E-value=98 Score=23.04 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhhhh
Q 018954 229 EKSQWEAMTVSRKAEKLQEEVESMQGE 255 (348)
Q Consensus 229 EKlewEa~tsn~Kve~LQ~dl~sm~~E 255 (348)
+..+-|+..+|.|...|+.+|..+..-
T Consensus 59 ~~V~~eL~~sN~kL~~L~~eL~eLna~ 85 (86)
T d1cxzb_ 59 GPVELLLRGSSRRLDLLHQQLQELHAH 85 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 457778889999999999888877654
No 15
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.20 E-value=1.4e+02 Score=24.52 Aligned_cols=48 Identities=17% Similarity=0.389 Sum_probs=31.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHH
Q 018954 148 SEKEIEELVALREQVEDLQRKMFEKDELLKSLESSKSQVNAVHLKLDELKR-LAAEKDSLIK 208 (348)
Q Consensus 148 ~~kd~eEl~~LreQVeeLqkKL~EKDelLkSae~~~~em~a~~akvDELr~-qlaeKe~lik 208 (348)
...-.++|-.+|.+++.|+.+.. .++..+..+.+.+++ .+++|..+|+
T Consensus 28 ~~~~i~~L~~iQ~e~~~l~~e~~-------------~e~~~le~k~~~~~~ply~~R~~iI~ 76 (222)
T d2e50a1 28 QQEAIEHIDEVQNEIDRLNEQAS-------------EEILKVEQKYNKLRQPFFQKRSELIA 76 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence 34555677777777777765543 356677777777766 5666666664
Done!