Query 018955
Match_columns 348
No_of_seqs 125 out of 1236
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:28:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018955.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018955hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 8E-83 1.7E-87 613.5 22.2 309 35-347 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 5.1E-49 1.1E-53 361.1 22.9 250 31-339 42-305 (305)
3 PF07745 Glyco_hydro_53: Glyco 99.2 2.7E-09 6E-14 103.9 21.7 245 49-346 26-330 (332)
4 PF03198 Glyco_hydro_72: Gluca 98.8 1.4E-07 3E-12 90.5 16.0 193 34-276 29-252 (314)
5 COG3867 Arabinogalactan endo-1 98.4 1E-05 2.3E-10 76.9 16.0 245 49-346 65-389 (403)
6 PRK10150 beta-D-glucuronidase; 98.3 0.00012 2.6E-09 77.2 23.7 239 52-345 318-585 (604)
7 PF00150 Cellulase: Cellulase 98.0 0.00029 6.4E-09 65.8 16.8 122 34-157 10-166 (281)
8 smart00633 Glyco_10 Glycosyl h 98.0 0.00082 1.8E-08 63.2 18.2 212 72-345 20-251 (254)
9 PF11790 Glyco_hydro_cc: Glyco 97.6 0.0031 6.7E-08 58.9 15.5 164 118-341 64-232 (239)
10 TIGR03356 BGL beta-galactosida 97.1 0.14 3E-06 52.0 21.6 45 50-94 57-120 (427)
11 PF00232 Glyco_hydro_1: Glycos 96.8 0.0038 8.3E-08 63.7 8.2 280 50-345 61-443 (455)
12 PF02836 Glyco_hydro_2_C: Glyc 96.6 0.14 3E-06 49.1 16.8 96 34-129 17-132 (298)
13 PLN02814 beta-glucosidase 95.0 4.9 0.00011 41.8 21.1 46 50-95 80-144 (504)
14 PRK10340 ebgA cryptic beta-D-g 93.0 5.7 0.00012 44.9 18.0 98 34-131 336-452 (1021)
15 PF02449 Glyco_hydro_42: Beta- 89.5 2.9 6.4E-05 41.4 10.3 94 38-131 1-140 (374)
16 PRK09936 hypothetical protein; 88.9 13 0.00029 35.9 13.6 119 33-151 20-170 (296)
17 cd02875 GH18_chitobiase Chitob 88.1 4.3 9.3E-05 40.2 10.3 133 61-212 56-191 (358)
18 PF01229 Glyco_hydro_39: Glyco 85.0 27 0.00059 36.0 14.7 250 52-343 45-351 (486)
19 cd02874 GH18_CFLE_spore_hydrol 84.0 8.9 0.00019 36.9 10.0 125 71-212 48-181 (313)
20 PF03662 Glyco_hydro_79n: Glyc 83.4 4 8.6E-05 40.0 7.2 174 73-277 114-300 (319)
21 cd06545 GH18_3CO4_chitinase Th 78.6 19 0.00042 33.5 10.0 81 72-155 50-133 (253)
22 PRK13511 6-phospho-beta-galact 78.3 3.7 8.1E-05 42.2 5.4 47 49-95 56-121 (469)
23 cd00598 GH18_chitinase-like Th 75.4 8.3 0.00018 34.3 6.3 82 73-155 54-142 (210)
24 PLN02998 beta-glucosidase 73.9 4.7 0.0001 41.9 4.8 46 50-95 85-149 (497)
25 cd02872 GH18_chitolectin_chito 71.7 21 0.00045 35.0 8.6 121 75-213 62-193 (362)
26 PF14587 Glyco_hydr_30_2: O-Gl 71.1 1.1E+02 0.0024 30.8 13.4 90 72-166 108-227 (384)
27 PLN02849 beta-glucosidase 70.8 6.3 0.00014 41.0 4.9 75 260-340 383-461 (503)
28 cd02876 GH18_SI-CLP Stabilin-1 69.1 53 0.0011 31.7 10.7 126 72-212 55-191 (318)
29 PF00925 GTP_cyclohydro2: GTP 66.8 6.5 0.00014 34.8 3.5 36 53-88 132-167 (169)
30 PRK09593 arb 6-phospho-beta-gl 63.9 15 0.00032 38.1 5.9 72 263-340 369-448 (478)
31 smart00636 Glyco_18 Glycosyl h 63.9 28 0.00061 33.5 7.6 124 74-212 57-188 (334)
32 PRK09589 celA 6-phospho-beta-g 62.7 21 0.00045 36.9 6.8 47 49-95 69-135 (476)
33 PRK15014 6-phospho-beta-glucos 62.7 11 0.00024 38.9 4.8 72 263-340 369-448 (477)
34 PRK09525 lacZ beta-D-galactosi 62.7 92 0.002 35.5 12.3 98 34-131 352-465 (1027)
35 PF02449 Glyco_hydro_42: Beta- 61.9 70 0.0015 31.6 10.2 56 135-210 207-262 (374)
36 PF13547 GTA_TIM: GTA TIM-barr 61.5 12 0.00027 36.0 4.4 83 117-213 17-112 (299)
37 PF00704 Glyco_hydro_18: Glyco 61.5 86 0.0019 29.9 10.6 118 78-212 70-196 (343)
38 smart00481 POLIIIAc DNA polyme 59.9 39 0.00084 24.5 6.1 45 46-90 14-63 (67)
39 PF12876 Cellulase-like: Sugar 59.6 23 0.00051 27.4 5.1 47 117-165 8-64 (88)
40 PF02055 Glyco_hydro_30: O-Gly 59.1 1.5E+02 0.0033 30.8 12.4 57 107-163 210-278 (496)
41 PF14488 DUF4434: Domain of un 56.6 1.4E+02 0.003 26.2 10.4 42 50-91 23-88 (166)
42 COG4782 Uncharacterized protei 56.4 37 0.0008 33.9 6.9 57 240-299 125-185 (377)
43 PRK09852 cryptic 6-phospho-bet 55.0 34 0.00073 35.4 6.7 46 50-95 74-139 (474)
44 TIGR00505 ribA GTP cyclohydrol 54.7 20 0.00042 32.4 4.4 33 53-85 131-163 (191)
45 PRK00393 ribA GTP cyclohydrola 53.7 21 0.00045 32.4 4.4 33 53-85 134-166 (197)
46 COG3934 Endo-beta-mannanase [C 52.1 56 0.0012 33.9 7.5 180 105-345 124-312 (587)
47 PF06117 DUF957: Enterobacteri 49.5 42 0.00091 25.0 4.6 42 100-153 10-55 (65)
48 cd02873 GH18_IDGF The IDGF's ( 48.8 1.8E+02 0.0039 29.3 10.8 59 135-213 167-225 (413)
49 PF05990 DUF900: Alpha/beta hy 47.3 84 0.0018 29.1 7.5 41 256-299 43-87 (233)
50 PF04909 Amidohydro_2: Amidohy 44.7 50 0.0011 30.0 5.7 81 102-207 56-137 (273)
51 cd00641 GTP_cyclohydro2 GTP cy 44.1 35 0.00076 30.7 4.4 36 53-88 133-168 (193)
52 PRK14334 (dimethylallyl)adenos 41.6 2.9E+02 0.0062 28.1 11.0 58 135-211 270-327 (440)
53 KOG0078 GTP-binding protein SE 39.6 68 0.0015 29.5 5.4 84 31-131 41-129 (207)
54 TIGR01233 lacG 6-phospho-beta- 39.5 54 0.0012 33.8 5.4 47 49-95 55-120 (467)
55 TIGR01579 MiaB-like-C MiaB-lik 39.5 4E+02 0.0087 26.6 12.7 137 46-212 166-329 (414)
56 PRK12485 bifunctional 3,4-dihy 37.4 41 0.00089 33.7 4.0 32 53-85 331-362 (369)
57 PF00331 Glyco_hydro_10: Glyco 36.7 40 0.00086 32.8 3.8 253 31-344 8-312 (320)
58 PRK14332 (dimethylallyl)adenos 36.4 4.8E+02 0.011 26.6 12.5 193 46-273 182-398 (449)
59 PRK09318 bifunctional 3,4-dihy 36.3 50 0.0011 33.3 4.4 38 53-90 320-357 (387)
60 COG4213 XylF ABC-type xylose t 36.1 75 0.0016 31.2 5.4 76 71-165 175-251 (341)
61 PF06180 CbiK: Cobalt chelatas 35.9 3.6E+02 0.0078 25.6 10.0 140 46-214 57-209 (262)
62 PRK09314 bifunctional 3,4-dihy 35.7 49 0.0011 32.8 4.2 34 52-85 300-334 (339)
63 PRK08815 GTP cyclohydrolase; P 35.2 53 0.0011 33.0 4.4 37 53-89 305-341 (375)
64 PRK14019 bifunctional 3,4-dihy 34.4 49 0.0011 33.1 4.0 35 53-88 328-362 (367)
65 PRK09311 bifunctional 3,4-dihy 34.0 57 0.0012 33.0 4.5 36 53-88 339-374 (402)
66 TIGR03632 bact_S11 30S ribosom 33.8 1E+02 0.0022 25.2 5.2 37 50-86 50-91 (108)
67 PRK13586 1-(5-phosphoribosyl)- 33.8 2.2E+02 0.0049 26.3 8.1 70 47-132 30-108 (232)
68 PLN02831 Bifunctional GTP cycl 33.7 57 0.0012 33.6 4.4 37 53-89 373-409 (450)
69 PRK09319 bifunctional 3,4-dihy 33.7 56 0.0012 34.5 4.4 37 53-89 343-379 (555)
70 PRK13587 1-(5-phosphoribosyl)- 32.7 2.3E+02 0.0049 26.3 8.0 70 47-132 31-111 (234)
71 TIGR01182 eda Entner-Doudoroff 32.1 3.7E+02 0.008 24.5 9.1 70 45-132 107-182 (204)
72 COG1433 Uncharacterized conser 31.6 1E+02 0.0022 25.9 4.8 40 50-89 55-94 (121)
73 cd04723 HisA_HisF Phosphoribos 31.3 2.6E+02 0.0056 25.7 8.1 69 48-132 36-113 (233)
74 PF14871 GHL6: Hypothetical gl 31.1 1.2E+02 0.0026 25.7 5.3 43 49-91 2-67 (132)
75 PRK14042 pyruvate carboxylase 30.2 2.2E+02 0.0047 30.5 8.1 38 53-90 102-145 (596)
76 cd02879 GH18_plant_chitinase_c 30.2 2.9E+02 0.0064 26.4 8.6 74 79-153 64-142 (299)
77 PF00977 His_biosynth: Histidi 30.1 1.2E+02 0.0025 28.0 5.5 71 47-133 29-109 (229)
78 COG0621 MiaB 2-methylthioadeni 29.7 4.3E+02 0.0094 27.1 9.9 62 132-212 275-336 (437)
79 PRK14114 1-(5-phosphoribosyl)- 29.6 2.7E+02 0.0059 25.9 8.0 70 47-132 30-108 (241)
80 KOG0626 Beta-glucosidase, lact 29.3 1.3E+02 0.0029 31.5 6.2 81 258-345 403-499 (524)
81 PRK14024 phosphoribosyl isomer 29.1 2.6E+02 0.0057 25.8 7.8 69 48-132 33-110 (241)
82 PF01301 Glyco_hydro_35: Glyco 28.5 5.5E+02 0.012 24.9 12.0 110 50-164 27-180 (319)
83 PF14903 WG_beta_rep: WG conta 27.8 46 0.001 20.5 1.7 16 332-347 1-16 (35)
84 TIGR03628 arch_S11P archaeal r 27.7 1.4E+02 0.0031 24.8 5.0 36 50-85 53-101 (114)
85 cd06548 GH18_chitinase The GH1 27.6 1.1E+02 0.0024 29.5 5.1 117 80-213 83-214 (322)
86 PLN00196 alpha-amylase; Provis 27.4 2.7E+02 0.0059 28.4 8.1 30 136-166 177-207 (428)
87 PRK14327 (dimethylallyl)adenos 27.2 5.8E+02 0.013 26.6 10.6 135 47-211 241-402 (509)
88 cd07937 DRE_TIM_PC_TC_5S Pyruv 26.8 4.4E+02 0.0095 24.9 9.0 92 50-150 94-191 (275)
89 PF00411 Ribosomal_S11: Riboso 26.6 1.3E+02 0.0028 24.6 4.6 36 51-86 51-91 (110)
90 COG0807 RibA GTP cyclohydrolas 26.6 1.2E+02 0.0025 27.7 4.7 39 53-91 133-171 (193)
91 PRK13347 coproporphyrinogen II 26.4 1.5E+02 0.0032 30.3 6.1 95 50-156 152-282 (453)
92 PF11775 CobT_C: Cobalamin bio 26.0 33 0.00072 31.8 1.1 62 247-324 36-99 (219)
93 PF02811 PHP: PHP domain; Int 24.7 1.9E+02 0.0041 24.3 5.6 47 44-90 13-64 (175)
94 COG1874 LacA Beta-galactosidas 24.7 3.2E+02 0.0069 29.8 8.3 117 34-165 17-156 (673)
95 PRK03941 NTPase; Reviewed 24.7 4.9E+02 0.011 23.2 8.3 61 82-152 1-61 (174)
96 CHL00041 rps11 ribosomal prote 24.6 1.8E+02 0.0039 24.1 5.2 35 51-85 64-103 (116)
97 cd04743 NPD_PKS 2-Nitropropane 24.5 6.6E+02 0.014 24.7 9.9 58 32-90 55-112 (320)
98 PF00834 Ribul_P_3_epim: Ribul 24.3 5.4E+02 0.012 23.3 10.2 94 48-157 68-167 (201)
99 PRK09989 hypothetical protein; 24.3 5.6E+02 0.012 23.5 9.3 50 36-86 5-58 (258)
100 PF02579 Nitro_FeMo-Co: Dinitr 23.7 3.2E+02 0.007 20.5 6.7 46 48-94 41-86 (94)
101 PRK14040 oxaloacetate decarbox 23.6 3.1E+02 0.0067 29.3 7.9 38 51-88 101-144 (593)
102 PF06309 Torsin: Torsin; Inte 23.4 3.7E+02 0.0081 22.8 6.9 53 246-299 36-114 (127)
103 cd07944 DRE_TIM_HOA_like 4-hyd 23.4 6.3E+02 0.014 23.8 9.5 88 52-150 87-180 (266)
104 PRK09607 rps11p 30S ribosomal 23.1 1.9E+02 0.0041 24.7 5.1 37 50-86 60-109 (132)
105 COG2113 ProX ABC-type proline/ 22.8 2E+02 0.0043 28.0 5.8 62 31-93 29-91 (302)
106 PF01055 Glyco_hydro_31: Glyco 22.2 2.9E+02 0.0063 27.7 7.2 131 135-317 41-178 (441)
107 PRK07198 hypothetical protein; 21.9 80 0.0017 32.0 2.9 37 53-89 338-375 (418)
108 PF02057 Glyco_hydro_59: Glyco 21.9 1.6E+02 0.0036 31.8 5.4 105 79-209 125-239 (669)
109 PF14465 NFRKB_winged: NFRKB W 21.4 74 0.0016 25.9 2.2 35 180-214 40-74 (100)
110 cd06549 GH18_trifunctional GH1 21.4 4E+02 0.0087 25.4 7.7 94 94-212 80-173 (298)
111 PRK12581 oxaloacetate decarbox 21.1 1.3E+02 0.0029 31.1 4.5 38 53-90 111-154 (468)
112 PRK05309 30S ribosomal protein 21.0 2.4E+02 0.0051 23.9 5.2 36 50-85 67-107 (128)
113 COG3858 Predicted glycosyl hyd 20.8 3E+02 0.0066 28.1 6.7 90 70-165 149-248 (423)
114 PLN03059 beta-galactosidase; P 20.7 1.2E+03 0.026 26.1 15.3 115 50-166 62-223 (840)
115 PRK11449 putative deoxyribonuc 20.4 3.8E+02 0.0082 25.1 7.1 34 263-299 91-124 (258)
116 COG5016 Pyruvate/oxaloacetate 20.4 1.2E+02 0.0025 31.0 3.7 38 53-90 104-147 (472)
117 cd06598 GH31_transferase_CtsZ 20.3 7.8E+02 0.017 23.7 11.3 71 135-213 22-96 (317)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=8e-83 Score=613.49 Aligned_cols=309 Identities=53% Similarity=0.962 Sum_probs=255.4
Q ss_pred eeEEecCCCCCCCCHHHHHHHHhhCCCCeEEEecCChHHHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHhhcccc
Q 018955 35 IGVCYGMLGNNLPSKRDVIALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRNF 114 (348)
Q Consensus 35 ~Gi~Y~~~~~~~~s~~~v~~ll~~~~~~~VRlY~~d~~vl~A~~~~glkV~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~ 114 (348)
+|||||+.++|+|+++++++++|+++|++||||++|+++|+|++++|++|++||+|+++++++.++..|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEecccccCCCcchHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhHHHH
Q 018955 115 ANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIR 194 (348)
Q Consensus 115 ~~~~~I~~I~VGNE~l~~~~~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~f~~d~~~~~~~~l~ 194 (348)
+|..+|+.|+||||++...... .|+++|+++|++|++.||+++|||+|+++++++..+||||+|.|++++.++|+|+++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~~-~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l~ 159 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDNA-YLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLLK 159 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGGG-GHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccce-eeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHHHH
Confidence 9999999999999999864323 899999999999999999988999999999999999999999999998889999999
Q ss_pred HHhhcCCcccccccccccccCC-CCCCccccccccCCceeccCCcchhhHHHHHHHHHHHHHHHhCCCCccEEEeeeccC
Q 018955 195 FLNENRSPLLLNLYPYFAIAGN-RQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLGIVISESGWP 273 (348)
Q Consensus 195 fL~~~~d~~~vN~yPff~~~~~-~~i~~~~a~f~~~~~~~~d~~~~y~n~~da~~da~~~a~~~~g~~~~~v~I~ETGWP 273 (348)
||.++++|+++|+||||.+.++ ..++++||+|++.+... |++++|+|+||+|+|++++||+++|+++++|+|+|||||
T Consensus 160 fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~-D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWP 238 (310)
T PF00332_consen 160 FLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVV-DGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWP 238 (310)
T ss_dssp HHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SE-ETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE---
T ss_pred HhhccCCCceeccchhhhccCCcccCCccccccccccccc-ccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEeccccc
Confidence 9999999999999999999998 99999999999876656 889999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEEEeecCCCCCCCCCCCceeeecCCCCeeeeccc
Q 018955 274 TAGGDGALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQPRYQINF 347 (348)
Q Consensus 274 S~G~~~~vas~~na~~y~~~~~~~~~~gtp~~~~~~~~~f~F~~fDe~wK~~~~~E~~wGl~~~d~~~ky~l~~ 347 (348)
|+|+.+ ++++||+.|++++++++.+|||+||+.++++||||+|||+||+++++|||||||++||++||+|+|
T Consensus 239 s~G~~~--a~~~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 239 SAGDPG--ATPENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp SSSSTT--CSHHHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred cCCCCC--CCcchhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 999977 999999999999999999999999988999999999999999977799999999999999999987
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.1e-49 Score=361.07 Aligned_cols=250 Identities=21% Similarity=0.345 Sum_probs=203.3
Q ss_pred CCCeeeEEecCCCCC--CCCHHHHHH---HHhhCCCCeEEEecCC----hHHHHHHhcCCCEEEEecCCCchhhhhhcHH
Q 018955 31 TSAQIGVCYGMLGNN--LPSKRDVIA---LYNQNNIRRMRLYDPN----REALEALRGSNIEVMLGLPNNDLRRIASNQA 101 (348)
Q Consensus 31 ~~~~~Gi~Y~~~~~~--~~s~~~v~~---ll~~~~~~~VRlY~~d----~~vl~A~~~~glkV~lGv~~~~~~~~a~~~~ 101 (348)
+-+..||||+|+.++ ||+.+++.. +|++. ...||+|++| .+|++|+...|+||.||||..+.-+- +.+
T Consensus 42 a~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~-t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~--~~~ 118 (305)
T COG5309 42 ASGFLAFTLGPYNDDGTCKSADQVASDLELLASY-THSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHD--AVE 118 (305)
T ss_pred cccccceeccccCCCCCCcCHHHHHhHHHHhccC-CceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhh--hHH
Confidence 456889999999865 899999864 55555 3499999988 47889999999999999998653331 222
Q ss_pred HHHHHHHhhccccCCCceEEEEEecccccCCCc-chHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcc
Q 018955 102 EANTWVQNNVRNFANNVKFKYIAVGNEAKPGDN-FAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGS 180 (348)
Q Consensus 102 ~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~-~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~ 180 (348)
+-+..++++++.++.|++|+||||.|+|++ ++++|+.+|..||.+|+.+|++ .||+|+|+|.++.+.
T Consensus 119 ---~til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~n------- 186 (305)
T COG5309 119 ---KTILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVINN------- 186 (305)
T ss_pred ---HHHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeCC-------
Confidence 124567888888999999999999999987 8999999999999999999996 599999999988751
Q ss_pred cccCccchhhHHHHHHhhcCCcccccccccccccCCCCCCccccccccCCceeccCCcchhhHHHHHHHHHHHHHHHhCC
Q 018955 181 FKQDYRPILDPLIRFLNENRSPLLLNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGG 260 (348)
Q Consensus 181 f~~d~~~~~~~~l~fL~~~~d~~~vN~yPff~~~~~~~i~~~~a~f~~~~~~~~d~~~~y~n~~da~~da~~~a~~~~g~ 260 (348)
+. ||++.||+|+|.||||+... ...+.+ .++-.|++-++.+ +|
T Consensus 187 ------p~-------l~~~SDfia~N~~aYwd~~~----------------~a~~~~----~f~~~q~e~vqsa---~g- 229 (305)
T COG5309 187 ------PE-------LCQASDFIAANAHAYWDGQT----------------VANAAG----TFLLEQLERVQSA---CG- 229 (305)
T ss_pred ------hH-------Hhhhhhhhhcccchhccccc----------------hhhhhh----HHHHHHHHHHHHh---cC-
Confidence 22 78999999999999999862 122222 4554566666544 34
Q ss_pred CCccEEEeeeccCCCCC-CC-CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEEEeecCCCCCCC--CCCCceeeec
Q 018955 261 GSLGIVISESGWPTAGG-DG-ALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKTGP--EIERHWGLFA 336 (348)
Q Consensus 261 ~~~~v~I~ETGWPS~G~-~~-~vas~~na~~y~~~~~~~~~~gtp~~~~~~~~~f~F~~fDe~wK~~~--~~E~~wGl~~ 336 (348)
.+|+++|+||||||.|. .| .+||++||+.|++++++.++ . .|.++|+||+|||+||..+ ++|+|||++.
T Consensus 230 ~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~------~-~G~d~fvfeAFdd~WK~~~~y~VEkywGv~~ 302 (305)
T COG5309 230 TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALR------S-CGYDVFVFEAFDDDWKADGSYGVEKYWGVLS 302 (305)
T ss_pred CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhh------c-cCccEEEeeeccccccCccccchhhceeeec
Confidence 45999999999999997 33 37999999999999999884 2 4899999999999999764 5999999999
Q ss_pred CCC
Q 018955 337 PTR 339 (348)
Q Consensus 337 ~d~ 339 (348)
.||
T Consensus 303 s~~ 305 (305)
T COG5309 303 SDR 305 (305)
T ss_pred cCC
Confidence 875
No 3
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.21 E-value=2.7e-09 Score=103.94 Aligned_cols=245 Identities=15% Similarity=0.282 Sum_probs=128.2
Q ss_pred HHHHHHHHhhCCCCeEEEe---cC------C-hHHH---HHHhcCCCEEEEecCCCchhh----------hhh-cHHHHH
Q 018955 49 KRDVIALYNQNNIRRMRLY---DP------N-REAL---EALRGSNIEVMLGLPNNDLRR----------IAS-NQAEAN 104 (348)
Q Consensus 49 ~~~v~~ll~~~~~~~VRlY---~~------d-~~vl---~A~~~~glkV~lGv~~~~~~~----------~a~-~~~~a~ 104 (348)
..+++++||..|++.||+= ++ | ..++ +.+++.||+|+|-.--+|-.+ ... +.+++.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 4678999999999888875 11 2 2344 456679999999987654211 111 122222
Q ss_pred ----HHHHhhccccC-CCceEEEEEecccccCC-----C--cchHHHHHHHHHHHHHHHHcCCCCceEEeeeeecccccc
Q 018955 105 ----TWVQNNVRNFA-NNVKFKYIAVGNEAKPG-----D--NFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGE 172 (348)
Q Consensus 105 ----~wv~~~v~~~~-~~~~I~~I~VGNE~l~~-----~--~~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~ 172 (348)
+..++-+.... -+..++.|.||||.-.. + ...+.+...++...+++++.+- +++|-.-. ..
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~-----~~ 178 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHL-----AN 178 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEE-----S-
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEE-----CC
Confidence 12111111110 25678899999996442 1 2577788888888888887544 35554321 11
Q ss_pred ccCCCCcccccCccchhhHHHHHHh---hcCCcccccccccccccCCCCCCccccccccCCceeccCCcchhhHHHHHHH
Q 018955 173 SFPPSRGSFKQDYRPILDPLIRFLN---ENRSPLLLNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILD 249 (348)
Q Consensus 173 s~pPs~~~f~~d~~~~~~~~l~fL~---~~~d~~~vN~yPff~~~~~~~i~~~~a~f~~~~~~~~d~~~~y~n~~da~~d 249 (348)
|.. ....+-..+.|. -.-|+++++.||||... -+.+...++
T Consensus 179 ---~~~-------~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~--------------------------l~~l~~~l~ 222 (332)
T PF07745_consen 179 ---GGD-------NDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGT--------------------------LEDLKNNLN 222 (332)
T ss_dssp ---TTS-------HHHHHHHHHHHHHTTGG-SEEEEEE-STTST---------------------------HHHHHHHHH
T ss_pred ---CCc-------hHHHHHHHHHHHhcCCCcceEEEecCCCCcch--------------------------HHHHHHHHH
Confidence 000 001111222222 24599999999999862 022233333
Q ss_pred HHHHHHHHhCCCCccEEEeeeccCCCCC-----C----------CCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCccEEE
Q 018955 250 AVYAALEKTGGGSLGIVISESGWPTAGG-----D----------GALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYI 314 (348)
Q Consensus 250 a~~~a~~~~g~~~~~v~I~ETGWPS~G~-----~----------~~vas~~na~~y~~~~~~~~~~gtp~~~~~~~~~f~ 314 (348)
.+. ++. +|+|+|.|||||..-. . +.-+|++.|+.|++.+++.+. ..|. +.+..+||
T Consensus 223 ~l~---~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~-~~p~--~~g~GvfY 293 (332)
T PF07745_consen 223 DLA---SRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVK-NVPN--GGGLGVFY 293 (332)
T ss_dssp HHH---HHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHH-TS----TTEEEEEE
T ss_pred HHH---HHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHH-Hhcc--CCeEEEEe
Confidence 332 333 4799999999999821 0 113689999999999999885 2222 24788888
Q ss_pred EE-eecCCC-----CCCCCCCCceeeecCCCCeeeecc
Q 018955 315 FA-MFDENG-----KTGPEIERHWGLFAPTRQPRYQIN 346 (348)
Q Consensus 315 F~-~fDe~w-----K~~~~~E~~wGl~~~d~~~ky~l~ 346 (348)
-| ..-..+ ..|..+|.. +||+.+|++--+|+
T Consensus 294 WeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~sl~ 330 (332)
T PF07745_consen 294 WEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPSLD 330 (332)
T ss_dssp E-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GGGG
T ss_pred eccccccCCcccccCCCCCcccc-ccCCCCCCCchHhh
Confidence 87 222221 122345555 99999999876664
No 4
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.82 E-value=1.4e-07 Score=90.49 Aligned_cols=193 Identities=24% Similarity=0.314 Sum_probs=101.0
Q ss_pred eeeEEecCCCCC--------CCC---HHHHHHHHhhCCCCeEEEecCCh-----HHHHHHhcCCCEEEEecCCCchhhhh
Q 018955 34 QIGVCYGMLGNN--------LPS---KRDVIALYNQNNIRRMRLYDPNR-----EALEALRGSNIEVMLGLPNNDLRRIA 97 (348)
Q Consensus 34 ~~Gi~Y~~~~~~--------~~s---~~~v~~ll~~~~~~~VRlY~~d~-----~vl~A~~~~glkV~lGv~~~~~~~~a 97 (348)
..||.|-|-.+. +-. ..+++.+||+.|++.||+|+.|+ .-..+|+..||-|++.+.... .++.
T Consensus 29 ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~-~sI~ 107 (314)
T PF03198_consen 29 IKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPN-GSIN 107 (314)
T ss_dssp EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTT-BS--
T ss_pred EeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCC-cccc
Confidence 469999988652 111 13467899999999999998873 467889999999999998652 1111
Q ss_pred h-cH------HHHHHHHHhhccccCCCceEEEEEecccccCCCc---chHHHHHHHHHHHHHHHHcCCCCceEEeeeeec
Q 018955 98 S-NQ------AEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDN---FAQYLVPAMRNIQNAINAAGLGNQIKVSTAIET 167 (348)
Q Consensus 98 ~-~~------~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~---~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~~~ 167 (348)
+ ++ ....+ ..+-|..+..=+++-+..+|||++.... .++.+-.+++.+|+-+++.++. .|||+-+-+-
T Consensus 108 r~~P~~sw~~~l~~~-~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYsaaD 185 (314)
T PF03198_consen 108 RSDPAPSWNTDLLDR-YFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYSAAD 185 (314)
T ss_dssp TTS------HHHHHH-HHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE--
T ss_pred CCCCcCCCCHHHHHH-HHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEEccC
Confidence 1 11 11222 2233444433368999999999998642 5888999999999999999986 4999966421
Q ss_pred cccccccCCCCcccccCccchhhHHHHHHh-----hcCCcccccccccccccCCCCCCccccccccCCceeccCCcchhh
Q 018955 168 GALGESFPPSRGSFKQDYRPILDPLIRFLN-----ENRSPLLLNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRS 242 (348)
Q Consensus 168 ~~~~~s~pPs~~~f~~d~~~~~~~~l~fL~-----~~~d~~~vN~yPff~~~~~~~i~~~~a~f~~~~~~~~d~~~~y~n 242 (348)
. .....++.++|. +..|++++|.|-+=.. ..|+. . .|..
T Consensus 186 ~-----------------~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~----------Stf~~-------S--Gy~~ 229 (314)
T PF03198_consen 186 D-----------------AEIRQDLANYLNCGDDDERIDFFGLNSYEWCGD----------STFET-------S--GYDR 229 (314)
T ss_dssp ------------------TTTHHHHHHHTTBTT-----S-EEEEE----SS------------HHH-------H--SHHH
T ss_pred C-----------------hhHHHHHHHHhcCCCcccccceeeeccceecCC----------Ccccc-------c--cHHH
Confidence 1 112234556665 3669999999875321 12221 1 2333
Q ss_pred HHHHHHHHHHHHHHHhCCCCccEEEeeeccCCCC
Q 018955 243 LFDAILDAVYAALEKTGGGSLGIVISESGWPTAG 276 (348)
Q Consensus 243 ~~da~~da~~~a~~~~g~~~~~v~I~ETGWPS~G 276 (348)
+.+ .. .++ .+||..+|.|.-+..
T Consensus 230 l~~--------~f--~~y-~vPvffSEyGCn~~~ 252 (314)
T PF03198_consen 230 LTK--------EF--SNY-SVPVFFSEYGCNTVT 252 (314)
T ss_dssp HHH--------HH--TT--SS-EEEEEE---SSS
T ss_pred HHH--------Hh--hCC-CCCeEEcccCCCCCC
Confidence 321 11 233 589999999997554
No 5
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.43 E-value=1e-05 Score=76.86 Aligned_cols=245 Identities=19% Similarity=0.350 Sum_probs=134.8
Q ss_pred HHHHHHHHhhCCCCeEEEe------cCC--------h---HHH---HHHhcCCCEEEEecCCCchhhhhhcHHHHHHHH-
Q 018955 49 KRDVIALYNQNNIRRMRLY------DPN--------R---EAL---EALRGSNIEVMLGLPNNDLRRIASNQAEANTWV- 107 (348)
Q Consensus 49 ~~~v~~ll~~~~~~~VRlY------~~d--------~---~vl---~A~~~~glkV~lGv~~~~~~~~a~~~~~a~~wv- 107 (348)
..+.+++||..|+++||+- ++| . .++ +.+++.||||++-.-.+|-.+=..-+..-+.|.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~ 144 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKAWEN 144 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHHhhh
Confidence 4667899999999988874 333 1 233 345678999999987665322000011111221
Q ss_pred ------Hhhcccc--------C-CCceEEEEEecccccCC-----Cc--chHHHHHHHHHHHHHHHHcCCCCceEEeeee
Q 018955 108 ------QNNVRNF--------A-NNVKFKYIAVGNEAKPG-----DN--FAQYLVPAMRNIQNAINAAGLGNQIKVSTAI 165 (348)
Q Consensus 108 ------~~~v~~~--------~-~~~~I~~I~VGNE~l~~-----~~--~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~ 165 (348)
++.|-.| . -+..+..|-||||.-.. ++ ....+...++.--.+++.. +.+|+|---
T Consensus 145 l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev--~p~ikv~lH- 221 (403)
T COG3867 145 LNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREV--SPTIKVALH- 221 (403)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhc--CCCceEEEE-
Confidence 1111111 0 24567889999997532 22 2344444444444444442 335776543
Q ss_pred eccccccccCCCCcccccCccchhhHHHHHHhh---cCCcccccccccccccCCCCCCccccccccCCceeccCCcchhh
Q 018955 166 ETGALGESFPPSRGSFKQDYRPILDPLIRFLNE---NRSPLLLNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRS 242 (348)
Q Consensus 166 ~~~~~~~s~pPs~~~f~~d~~~~~~~~l~fL~~---~~d~~~vN~yPff~~~~~~~i~~~~a~f~~~~~~~~d~~~~y~n 242 (348)
+.+.-.+| .|+ -+.+.|.+ .-|+++.--||||.+.= . |
T Consensus 222 ----la~g~~n~--~y~--------~~fd~ltk~nvdfDVig~SyYpyWhgtl------------------~-------n 262 (403)
T COG3867 222 ----LAEGENNS--LYR--------WIFDELTKRNVDFDVIGSSYYPYWHGTL------------------N-------N 262 (403)
T ss_pred ----ecCCCCCc--hhh--------HHHHHHHHcCCCceEEeeeccccccCcH------------------H-------H
Confidence 22222221 222 12222333 34889999999999741 1 1
Q ss_pred HHHHHHHHHHHHHHHhCCCCccEEEeeecc--------------CCCCCC-CCCCCHHHHHHHHHHHHHHHHhcCCCCCC
Q 018955 243 LFDAILDAVYAALEKTGGGSLGIVISESGW--------------PTAGGD-GALTNVDNARTYNNNLIQHVKRGSPKRPG 307 (348)
Q Consensus 243 ~~da~~da~~~a~~~~g~~~~~v~I~ETGW--------------PS~G~~-~~vas~~na~~y~~~~~~~~~~gtp~~~~ 307 (348)
+...++.+.. . =+|+|+|.||+. |+.+.. +.-.+++.|.+|.+.+++.+. -.|..
T Consensus 263 -L~~nl~dia~---r---Y~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~-nvp~~-- 332 (403)
T COG3867 263 -LTTNLNDIAS---R---YHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVK-NVPKS-- 332 (403)
T ss_pred -HHhHHHHHHH---H---hcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHH-hCCCC--
Confidence 1111222211 1 257999999998 666542 224788999999999999885 22222
Q ss_pred CCccEEEEE-e-----e-------------cCCCCCCCCCCCceeeecCCCCeeeecc
Q 018955 308 RPIETYIFA-M-----F-------------DENGKTGPEIERHWGLFAPTRQPRYQIN 346 (348)
Q Consensus 308 ~~~~~f~F~-~-----f-------------De~wK~~~~~E~~wGl~~~d~~~ky~l~ 346 (348)
.|..+||.| + . .|+|+.+..++.. -||+.+|.|-.+|+
T Consensus 333 ~GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNq-aLfdf~G~~LPSl~ 389 (403)
T COG3867 333 NGLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQ-ALFDFNGHPLPSLN 389 (403)
T ss_pred CceEEEEecccceeccCCCccccchhhccCcccccCCCccchh-hhhhccCCcCcchh
Confidence 367777776 1 1 2344443223333 58888888876654
No 6
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.35 E-value=0.00012 Score=77.16 Aligned_cols=239 Identities=15% Similarity=0.107 Sum_probs=133.5
Q ss_pred HHHHHhhCCCCeEEEe--cCChHHHHHHhcCCCEEEEecCCC---------------chhhhh------hcHHHHHHHHH
Q 018955 52 VIALYNQNNIRRMRLY--DPNREALEALRGSNIEVMLGLPNN---------------DLRRIA------SNQAEANTWVQ 108 (348)
Q Consensus 52 v~~ll~~~~~~~VRlY--~~d~~vl~A~~~~glkV~lGv~~~---------------~~~~~a------~~~~~a~~wv~ 108 (348)
.++++|..|++.||+- -.++..+.+|-..||-|+.=++.- +.+... +..+...+-++
T Consensus 318 d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (604)
T PRK10150 318 DHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIR 397 (604)
T ss_pred HHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 4678999999999993 235789999999999988544210 000000 01112222244
Q ss_pred hhccccCCCceEEEEEecccccCCCcchHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccch
Q 018955 109 NNVRNFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPI 188 (348)
Q Consensus 109 ~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~f~~d~~~~ 188 (348)
+.|..+..--.|..=++|||.-...+. ....++.+.+.+++.. +.=+|+.+..+. . +|. . ..
T Consensus 398 ~mv~r~~NHPSIi~Ws~gNE~~~~~~~---~~~~~~~l~~~~k~~D--ptR~vt~~~~~~---~--~~~-----~---~~ 459 (604)
T PRK10150 398 ELIARDKNHPSVVMWSIANEPASREQG---AREYFAPLAELTRKLD--PTRPVTCVNVMF---A--TPD-----T---DT 459 (604)
T ss_pred HHHHhccCCceEEEEeeccCCCccchh---HHHHHHHHHHHHHhhC--CCCceEEEeccc---C--Ccc-----c---cc
Confidence 455555433457799999997533222 2233344444444433 234677654211 0 010 0 00
Q ss_pred hhHHHHHHhhcCCcccccccccccccCCCCCCccccccccCCceeccCCcchhhHHHHHHHHHHHHHHHhCCCCccEEEe
Q 018955 189 LDPLIRFLNENRSPLLLNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLGIVIS 268 (348)
Q Consensus 189 ~~~~l~fL~~~~d~~~vN~yPff~~~~~~~i~~~~a~f~~~~~~~~d~~~~y~n~~da~~da~~~a~~~~g~~~~~v~I~ 268 (348)
+.+..|+++.|.|+=|-.... + .. .....++..++.. .++ + +||++++
T Consensus 460 -------~~~~~Dv~~~N~Y~~wy~~~~-~--------------~~----~~~~~~~~~~~~~---~~~--~-~kP~~is 507 (604)
T PRK10150 460 -------VSDLVDVLCLNRYYGWYVDSG-D--------------LE----TAEKVLEKELLAW---QEK--L-HKPIIIT 507 (604)
T ss_pred -------ccCcccEEEEcccceecCCCC-C--------------HH----HHHHHHHHHHHHH---HHh--c-CCCEEEE
Confidence 233459999999863321100 0 00 0012222222211 111 2 7899999
Q ss_pred eeccCCCCC----CCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEEEeecCCCCCCC--CCCCceeeecCCCCee
Q 018955 269 ESGWPTAGG----DGALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKTGP--EIERHWGLFAPTRQPR 342 (348)
Q Consensus 269 ETGWPS~G~----~~~vas~~na~~y~~~~~~~~~~gtp~~~~~~~~~f~F~~fDe~wK~~~--~~E~~wGl~~~d~~~k 342 (348)
|.|+.+.-+ ....-|.+.|..|++...+.++ .+|. -...|+-.+||-.+..+. .-..+.||++.||+||
T Consensus 508 Eyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~----~~p~-~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~~dr~~k 582 (604)
T PRK10150 508 EYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFD----RVPA-VVGEQVWNFADFATSQGILRVGGNKKGIFTRDRQPK 582 (604)
T ss_pred ccCCccccccccCCCCCCCHHHHHHHHHHHHHHHh----cCCc-eEEEEEEeeeccCCCCCCcccCCCcceeEcCCCCCh
Confidence 999876322 1113578889999888877765 2453 567889999996554321 1235789999999999
Q ss_pred eec
Q 018955 343 YQI 345 (348)
Q Consensus 343 y~l 345 (348)
-..
T Consensus 583 ~~~ 585 (604)
T PRK10150 583 SAA 585 (604)
T ss_pred HHH
Confidence 654
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.04 E-value=0.00029 Score=65.78 Aligned_cols=122 Identities=16% Similarity=0.092 Sum_probs=77.8
Q ss_pred eeeEEecCCCCCCCCHHHHHHHHhhCCCCeEEEecC-------------C-------hHHHHHHhcCCCEEEEecCCCc-
Q 018955 34 QIGVCYGMLGNNLPSKRDVIALYNQNNIRRMRLYDP-------------N-------REALEALRGSNIEVMLGLPNND- 92 (348)
Q Consensus 34 ~~Gi~Y~~~~~~~~s~~~v~~ll~~~~~~~VRlY~~-------------d-------~~vl~A~~~~glkV~lGv~~~~- 92 (348)
..|+|-. +.... ..+++++.+++.|++.||+.-. + ..+|+++++.||+|+|.+....
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 4566655 22111 6788899999999999999711 1 2578888999999999887630
Q ss_pred ---hhhhhhcHHHHHHHHHh---hccccC-CCceEEEEEecccccCCCc-------chHHHHHHHHHHHHHHHHcCCCC
Q 018955 93 ---LRRIASNQAEANTWVQN---NVRNFA-NNVKFKYIAVGNEAKPGDN-------FAQYLVPAMRNIQNAINAAGLGN 157 (348)
Q Consensus 93 ---~~~~a~~~~~a~~wv~~---~v~~~~-~~~~I~~I~VGNE~l~~~~-------~~~~Ll~~i~~v~~~L~~~gl~~ 157 (348)
............+|+++ .+...| ....|.++-+.||+..... ....+.+.++.+-+++++.+-..
T Consensus 88 w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~ 166 (281)
T PF00150_consen 88 WANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNH 166 (281)
T ss_dssp CSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcc
Confidence 00001111122222222 233322 3445779999999988532 34778899999999999998653
No 8
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.95 E-value=0.00082 Score=63.22 Aligned_cols=212 Identities=15% Similarity=0.078 Sum_probs=114.1
Q ss_pred HHHHHHhcCCCEEEE--ecCCCchhhhhh------cHHHHHHHHHhhccccCCCceEEEEEecccccCCCc------chH
Q 018955 72 EALEALRGSNIEVML--GLPNNDLRRIAS------NQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDN------FAQ 137 (348)
Q Consensus 72 ~vl~A~~~~glkV~l--Gv~~~~~~~~a~------~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~------~~~ 137 (348)
.+++.+++.||+|-- -+|....+.... ..+...+++++.+..| ...|...-|.||++..+. ...
T Consensus 20 ~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry--~g~i~~wdV~NE~~~~~~~~~~~~~w~ 97 (254)
T smart00633 20 AIVNFAKENGIKVRGHTLVWHSQTPDWVFNLSKETLLARLENHIKTVVGRY--KGKIYAWDVVNEALHDNGSGLRRSVWY 97 (254)
T ss_pred HHHHHHHHCCCEEEEEEEeecccCCHhhhcCCHHHHHHHHHHHHHHHHHHh--CCcceEEEEeeecccCCCcccccchHH
Confidence 466777788888632 256554444332 1345566676666666 356999999999986431 121
Q ss_pred HHH--HHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhHHHHHHhhc---CCccccccccccc
Q 018955 138 YLV--PAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNEN---RSPLLLNLYPYFA 212 (348)
Q Consensus 138 ~Ll--~~i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~f~~d~~~~~~~~l~fL~~~---~d~~~vN~yPff~ 212 (348)
..+ .+|+..-+..++.. +++++-.-+ +++.. ++. + ...+..+++.|.+. .|-+++..|-+.+
T Consensus 98 ~~~G~~~i~~af~~ar~~~--P~a~l~~Nd-y~~~~---~~~----k---~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~ 164 (254)
T smart00633 98 QILGEDYIEKAFRYAREAD--PDAKLFYND-YNTEE---PNA----K---RQAIYELVKKLKAKGVPIDGIGLQSHLSLG 164 (254)
T ss_pred HhcChHHHHHHHHHHHHhC--CCCEEEEec-cCCcC---ccH----H---HHHHHHHHHHHHHCCCccceeeeeeeecCC
Confidence 222 34444444444433 235554432 11111 100 0 11234455555443 3444444332110
Q ss_pred ccCCCCCCccccccccCCceeccCCcchhhHHHHHHHHHHHHHHHhCCCCccEEEeeeccCCCCCCCCCCCHHHHHHHHH
Q 018955 213 IAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLGIVISESGWPTAGGDGALTNVDNARTYNN 292 (348)
Q Consensus 213 ~~~~~~i~~~~a~f~~~~~~~~d~~~~y~n~~da~~da~~~a~~~~g~~~~~v~I~ETGWPS~G~~~~vas~~na~~y~~ 292 (348)
. . + .+.+...|++++-.++||+|||.+-|.. ++++.|+.+++
T Consensus 165 ~----------------------~-----~-----~~~~~~~l~~~~~~g~pi~iTE~dv~~~------~~~~~qA~~~~ 206 (254)
T smart00633 165 S----------------------P-----N-----IAEIRAALDRFASLGLEIQITELDISGY------PNPQAQAADYE 206 (254)
T ss_pred C----------------------C-----C-----HHHHHHHHHHHHHcCCceEEEEeecCCC------CcHHHHHHHHH
Confidence 0 0 1 1122333343333478999999999864 34588899999
Q ss_pred HHHHHHHhcCCCCCCCCccEEEEEeecC-CCCCCCCCCCceeeecCCCCeeeec
Q 018955 293 NLIQHVKRGSPKRPGRPIETYIFAMFDE-NGKTGPEIERHWGLFAPTRQPRYQI 345 (348)
Q Consensus 293 ~~~~~~~~gtp~~~~~~~~~f~F~~fDe-~wK~~~~~E~~wGl~~~d~~~ky~l 345 (348)
.+++.+.+ .|. ...+++....|. .|.+ +.+-|||+.|+++|-.+
T Consensus 207 ~~l~~~~~----~p~-v~gi~~Wg~~d~~~W~~----~~~~~L~d~~~~~kpa~ 251 (254)
T smart00633 207 EVFKACLA----HPA-VTGVTVWGVTDKYSWLD----GGAPLLFDANYQPKPAY 251 (254)
T ss_pred HHHHHHHc----CCC-eeEEEEeCCccCCcccC----CCCceeECCCCCCChhh
Confidence 99888752 232 344555555553 4443 24679999999999754
No 9
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.58 E-value=0.0031 Score=58.95 Aligned_cols=164 Identities=13% Similarity=0.126 Sum_probs=98.3
Q ss_pred ceEEEEEecccccCCCc---chHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhHHHH
Q 018955 118 VKFKYIAVGNEAKPGDN---FAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIR 194 (348)
Q Consensus 118 ~~I~~I~VGNE~l~~~~---~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~f~~d~~~~~~~~l~ 194 (348)
..++.|..=||+=...+ ++++.+...++..+.|+.. .+++..+-.-. ....+|+ -.+.++..++
T Consensus 64 ~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~~----~~~l~sPa~~~--~~~~~~~-------g~~Wl~~F~~ 130 (239)
T PF11790_consen 64 PGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRSP----GVKLGSPAVAF--TNGGTPG-------GLDWLSQFLS 130 (239)
T ss_pred cCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhcC----CcEEECCeecc--cCCCCCC-------ccHHHHHHHH
Confidence 46888999999876542 6888888888877777743 47777665210 0000011 1234444444
Q ss_pred HHh--hcCCcccccccccccccCCCCCCccccccccCCceeccCCcchhhHHHHHHHHHHHHHHHhCCCCccEEEeeecc
Q 018955 195 FLN--ENRSPLLLNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLGIVISESGW 272 (348)
Q Consensus 195 fL~--~~~d~~~vN~yPff~~~~~~~i~~~~a~f~~~~~~~~d~~~~y~n~~da~~da~~~a~~~~g~~~~~v~I~ETGW 272 (348)
-.. ...|++.+|.| ... . .-|...++.++ ++.| |||+|||.|+
T Consensus 131 ~~~~~~~~D~iavH~Y---~~~------------------~--------~~~~~~i~~~~---~~~~---kPIWITEf~~ 175 (239)
T PF11790_consen 131 ACARGCRVDFIAVHWY---GGD------------------A--------DDFKDYIDDLH---NRYG---KPIWITEFGC 175 (239)
T ss_pred hcccCCCccEEEEecC---CcC------------------H--------HHHHHHHHHHH---HHhC---CCEEEEeecc
Confidence 221 26788887777 110 0 12223344333 3433 7999999998
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEEEeecCCCCCCCCCCCceeeecCCCCe
Q 018955 273 PTAGGDGALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKTGPEIERHWGLFAPTRQP 341 (348)
Q Consensus 273 PS~G~~~~vas~~na~~y~~~~~~~~~~gtp~~~~~~~~~f~F~~fDe~wK~~~~~E~~wGl~~~d~~~ 341 (348)
.. +... .+.++++.|.+..+.++++ ++. --.++||...+ .+. .....-.|++.+|++
T Consensus 176 ~~-~~~~--~~~~~~~~fl~~~~~~ld~----~~~-VeryawF~~~~-~~~---~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 176 WN-GGSQ--GSDEQQASFLRQALPWLDS----QPY-VERYAWFGFMN-DGS---GVNPNSALLDADGSL 232 (239)
T ss_pred cC-CCCC--CCHHHHHHHHHHHHHHHhc----CCC-eeEEEeccccc-ccC---CCccccccccCCCCc
Confidence 87 2223 7889999999999999861 222 34688888333 222 245556777777754
No 10
>TIGR03356 BGL beta-galactosidase.
Probab=97.05 E-value=0.14 Score=52.02 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=35.3
Q ss_pred HHHHHHHhhCCCCeEEEec------------CC-------hHHHHHHhcCCCEEEEecCCCchh
Q 018955 50 RDVIALYNQNNIRRMRLYD------------PN-------REALEALRGSNIEVMLGLPNNDLR 94 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY~------------~d-------~~vl~A~~~~glkV~lGv~~~~~~ 94 (348)
+++++++++.|++++|+=- .+ .++|..+.+.||++++.+..-+++
T Consensus 57 ~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P 120 (427)
T TIGR03356 57 EEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLP 120 (427)
T ss_pred HHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCcc
Confidence 6788999999999998631 12 368899999999999999664444
No 11
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.82 E-value=0.0038 Score=63.71 Aligned_cols=280 Identities=19% Similarity=0.245 Sum_probs=132.3
Q ss_pred HHHHHHHhhCCCCeEEEecC-------------C-------hHHHHHHhcCCCEEEEecCCCchhhhhh------cHHHH
Q 018955 50 RDVIALYNQNNIRRMRLYDP-------------N-------REALEALRGSNIEVMLGLPNNDLRRIAS------NQAEA 103 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY~~-------------d-------~~vl~A~~~~glkV~lGv~~~~~~~~a~------~~~~a 103 (348)
+++++|+++.|++..|+==. | .++|..+...||+.++.+..-++|..-. +++.+
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~~ 140 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRETV 140 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHHH
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHHH
Confidence 67899999999999987511 2 3689999999999999999866654221 11211
Q ss_pred HHHHHhh----ccccCCCceEEEEEecccccCC-------C------c-------chHHHHHHHHHHHHHHHHcCCCCce
Q 018955 104 NTWVQNN----VRNFANNVKFKYIAVGNEAKPG-------D------N-------FAQYLVPAMRNIQNAINAAGLGNQI 159 (348)
Q Consensus 104 ~~wv~~~----v~~~~~~~~I~~I~VGNE~l~~-------~------~-------~~~~Ll~~i~~v~~~L~~~gl~~~I 159 (348)
++..+- +..+ ++.|+.-+.=||+..- + . ....++.+-..+.++++..+- +.
T Consensus 141 -~~F~~Ya~~~~~~~--gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~--~~ 215 (455)
T PF00232_consen 141 -DWFARYAEFVFERF--GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYP--DG 215 (455)
T ss_dssp -HHHHHHHHHHHHHH--TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTC--TS
T ss_pred -HHHHHHHHHHHHHh--CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhccc--ce
Confidence 122211 2233 4678888888886531 1 0 122244444445555666553 35
Q ss_pred EEeeeeecccccc--ccCCCC---c----c----------cccCccchhhH--------------HHHHHhhcCCccccc
Q 018955 160 KVSTAIETGALGE--SFPPSR---G----S----------FKQDYRPILDP--------------LIRFLNENRSPLLLN 206 (348)
Q Consensus 160 ~VsT~~~~~~~~~--s~pPs~---~----~----------f~~d~~~~~~~--------------~l~fL~~~~d~~~vN 206 (348)
+|+.+.+.....- ..++.. + . +..++...|+. -++.|....||+++|
T Consensus 216 ~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiN 295 (455)
T PF00232_consen 216 KIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGIN 295 (455)
T ss_dssp EEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEE
T ss_pred EEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhc
Confidence 7777665433210 000110 0 0 01111111111 223345679999999
Q ss_pred ccccccccCCC--CCCcccc---cccc---CCceeccCCcc-hhhHHHHHHHHHHHHHHHhCCCCccEEEeeeccCCCCC
Q 018955 207 LYPYFAIAGNR--QISLDYA---LFRS---QQTVVSDGSLS-YRSLFDAILDAVYAALEKTGGGSLGIVISESGWPTAGG 277 (348)
Q Consensus 207 ~yPff~~~~~~--~i~~~~a---~f~~---~~~~~~d~~~~-y~n~~da~~da~~~a~~~~g~~~~~v~I~ETGWPS~G~ 277 (348)
-|.=---...+ ..+..+. .+.. +.....+.+.. |..-+-.++.-++ + -++++||+|+|.|++....
T Consensus 296 YYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~l~---~--~Y~~~pI~ITENG~~~~~~ 370 (455)
T PF00232_consen 296 YYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRDVLRYLK---D--RYGNPPIYITENGIGDPDE 370 (455)
T ss_dssp ESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHHHHHHHH---H--HHTSSEEEEEEE---EETT
T ss_pred cccceeeccCccccccccccCCccccccccccccccccCcccccchHhhhhhhhc---c--ccCCCcEEEeccccccccc
Confidence 88632222211 1111111 0100 00011222221 1111111121111 2 2567999999999987764
Q ss_pred C--CCC---CCHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEEEeecCCCCCCCCCCCceeeecCC------CCeeeec
Q 018955 278 D--GAL---TNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKTGPEIERHWGLFAPT------RQPRYQI 345 (348)
Q Consensus 278 ~--~~v---as~~na~~y~~~~~~~~~~gtp~~~~~~~~~f~F~~fDe~wK~~~~~E~~wGl~~~d------~~~ky~l 345 (348)
. +.+ .-..--+.++..+.+.++.|.+. ..+|..++.|- +--..+..+.|||++-| |+||-+.
T Consensus 371 ~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V-----~GY~~WSl~Dn-~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S~ 443 (455)
T PF00232_consen 371 VDDGKVDDDYRIDYLQDHLNQVLKAIEDGVNV-----RGYFAWSLLDN-FEWAEGYKKRFGLVYVDFFDTLKRTPKKSA 443 (455)
T ss_dssp CTTSHBSHHHHHHHHHHHHHHHHHHHHTT-EE-----EEEEEETSB----BGGGGGGSE--SEEEETTTTTEEEEBHHH
T ss_pred ccccCcCcHHHHHHHHHHHHHHHhhhccCCCe-----eeEeeeccccc-cccccCccCccCceEEcCCCCcCeeeccHH
Confidence 2 100 11222344445555555445443 24777777773 33223589999999999 8887654
No 12
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.61 E-value=0.14 Score=49.11 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=54.5
Q ss_pred eeeEEecCCCCC---CCCHHH---HHHHHhhCCCCeEEEec--CChHHHHHHhcCCCEEEEecCCCch--hh-h------
Q 018955 34 QIGVCYGMLGNN---LPSKRD---VIALYNQNNIRRMRLYD--PNREALEALRGSNIEVMLGLPNNDL--RR-I------ 96 (348)
Q Consensus 34 ~~Gi~Y~~~~~~---~~s~~~---v~~ll~~~~~~~VRlY~--~d~~vl~A~~~~glkV~lGv~~~~~--~~-~------ 96 (348)
..|+|+...... .++.++ .++++|+.|++.||+.. .++..+..|...||-|+..++.... .. .
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 469998876433 244443 45688999999999963 3578999999999999987765110 00 0
Q ss_pred ---hhcHHHHHHHHHhhccccCCCceEEEEEecccc
Q 018955 97 ---ASNQAEANTWVQNNVRNFANNVKFKYIAVGNEA 129 (348)
Q Consensus 97 ---a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~ 129 (348)
....+.+.+-+++.|..+..--.|..=.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 011122333344555554332347788899999
No 13
>PLN02814 beta-glucosidase
Probab=94.99 E-value=4.9 Score=41.81 Aligned_cols=46 Identities=22% Similarity=0.365 Sum_probs=36.6
Q ss_pred HHHHHHHhhCCCCeEEEe---------c---CC-------hHHHHHHhcCCCEEEEecCCCchhh
Q 018955 50 RDVIALYNQNNIRRMRLY---------D---PN-------REALEALRGSNIEVMLGLPNNDLRR 95 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY---------~---~d-------~~vl~A~~~~glkV~lGv~~~~~~~ 95 (348)
+|+++|+|+.|++.-|+= + .+ .+++.++.+.||+-++.+..-++|.
T Consensus 80 ~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~ 144 (504)
T PLN02814 80 KEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQ 144 (504)
T ss_pred HHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 678999999998877753 1 12 3799999999999999999877664
No 14
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=92.95 E-value=5.7 Score=44.93 Aligned_cols=98 Identities=17% Similarity=0.099 Sum_probs=57.3
Q ss_pred eeeEEecCCCC---CCCCHHH---HHHHHhhCCCCeEEEecC--ChHHHHHHhcCCCEEEEecCCCc--------hhhhh
Q 018955 34 QIGVCYGMLGN---NLPSKRD---VIALYNQNNIRRMRLYDP--NREALEALRGSNIEVMLGLPNND--------LRRIA 97 (348)
Q Consensus 34 ~~Gi~Y~~~~~---~~~s~~~---v~~ll~~~~~~~VRlY~~--d~~vl~A~~~~glkV~lGv~~~~--------~~~~a 97 (348)
..|+|+-.... ...+.++ .++++|+.|++.||+-.- ++..+..|-..||-|+--+.... ...+.
T Consensus 336 lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 45777654321 1234443 467899999999998532 46789999999999987542210 00011
Q ss_pred hcH---HHHHHHHHhhccccCCCceEEEEEecccccC
Q 018955 98 SNQ---AEANTWVQNNVRNFANNVKFKYIAVGNEAKP 131 (348)
Q Consensus 98 ~~~---~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~ 131 (348)
.++ ++..+-+++.|.++..--.|..=++|||.-.
T Consensus 416 ~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 416 DDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 111 1112224445555433345778889999854
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=89.52 E-value=2.9 Score=41.38 Aligned_cols=94 Identities=13% Similarity=0.129 Sum_probs=55.8
Q ss_pred EecCCCCCCCCHHHHHHHHhhCCCCeEEEecC------------C----hHHHHHHhcCCCEEEEecCCCchhhhh----
Q 018955 38 CYGMLGNNLPSKRDVIALYNQNNIRRMRLYDP------------N----REALEALRGSNIEVMLGLPNNDLRRIA---- 97 (348)
Q Consensus 38 ~Y~~~~~~~~s~~~v~~ll~~~~~~~VRlY~~------------d----~~vl~A~~~~glkV~lGv~~~~~~~~a---- 97 (348)
||-|-.-....-++++++++..|++.|||-.. | ..+|..+++.||+|+|+++....+..-
T Consensus 1 dy~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~ 80 (374)
T PF02449_consen 1 DYYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKY 80 (374)
T ss_dssp E--GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCS
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhc
Confidence 34444322233467889999999999997422 1 368888999999999999743211110
Q ss_pred --------------------------hcHHHHHHHHHhhccccCCCceEEEEEecccccC
Q 018955 98 --------------------------SNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKP 131 (348)
Q Consensus 98 --------------------------~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~ 131 (348)
.-++.+.+.+.+-+..|.....|.++.|+||.-.
T Consensus 81 Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 81 PEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp GCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred ccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 0123344444444445544456999999999766
No 16
>PRK09936 hypothetical protein; Provisional
Probab=88.89 E-value=13 Score=35.88 Aligned_cols=119 Identities=13% Similarity=0.139 Sum_probs=68.7
Q ss_pred CeeeEEecCCCCC-CCCHHH---HHHHHhhCCCCeEEEe-----cCC--------hHHHHHHhcCCCEEEEecCCCch--
Q 018955 33 AQIGVCYGMLGNN-LPSKRD---VIALYNQNNIRRMRLY-----DPN--------REALEALRGSNIEVMLGLPNNDL-- 93 (348)
Q Consensus 33 ~~~Gi~Y~~~~~~-~~s~~~---v~~ll~~~~~~~VRlY-----~~d--------~~vl~A~~~~glkV~lGv~~~~~-- 93 (348)
...|+=|-|+..+ --++++ ..+.++..|++.+=+- +.| .+.++++...||+|.+|++.|..
T Consensus 20 a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~y~ 99 (296)
T PRK09936 20 AMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADPEFF 99 (296)
T ss_pred ccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCChHHH
Confidence 3456679999766 456654 5666777888776542 222 47888889999999999998741
Q ss_pred hhhhhcHHHHHHHHHhhcccc---------CCCceEEEEEeccccc-CCCc---chHHHHHHHHHHHHHHH
Q 018955 94 RRIASNQAEANTWVQNNVRNF---------ANNVKFKYIAVGNEAK-PGDN---FAQYLVPAMRNIQNAIN 151 (348)
Q Consensus 94 ~~~a~~~~~a~~wv~~~v~~~---------~~~~~I~~I~VGNE~l-~~~~---~~~~Ll~~i~~v~~~L~ 151 (348)
..+..+..+.+.|++...... .++..+++-.+-=|.= +... --+.|+..++++.+.|.
T Consensus 100 q~~~~d~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~~l~ 170 (296)
T PRK09936 100 MHQKQDGAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELDDLNWRDEARRQPLLTWLNAAQRLID 170 (296)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccchhcccCHHHHHHHHHHHHHHHHhCC
Confidence 122223333344443321110 1233455544444543 1222 24557778888877765
No 17
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=88.05 E-value=4.3 Score=40.21 Aligned_cols=133 Identities=14% Similarity=0.135 Sum_probs=76.6
Q ss_pred CCeEEEecC-ChHHHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHhhccccCCCceEEEEEecccccCC-C-cchH
Q 018955 61 IRRMRLYDP-NREALEALRGSNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPG-D-NFAQ 137 (348)
Q Consensus 61 ~~~VRlY~~-d~~vl~A~~~~glkV~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~-~-~~~~ 137 (348)
++.|-+|+. ++.++..+.+.|++|++..-.. .+ ...+++...+++++- ..+......++|-+==|-... + ....
T Consensus 56 ~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~-~l~~~~~R~~fi~si-v~~~~~~gfDGIdIDwE~p~~~~~~d~~ 132 (358)
T cd02875 56 VTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LE-QISNPTYRTQWIQQK-VELAKSQFMDGINIDIEQPITKGSPEYY 132 (358)
T ss_pred ceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HH-HcCCHHHHHHHHHHH-HHHHHHhCCCeEEEcccCCCCCCcchHH
Confidence 688888854 6789999999999999864322 22 223444444444433 222222235566665554432 1 2456
Q ss_pred HHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhHHHHHHhhcCCccccccccccc
Q 018955 138 YLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFA 212 (348)
Q Consensus 138 ~Ll~~i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~f~~d~~~~~~~~l~fL~~~~d~~~vN~yPff~ 212 (348)
.+...|+++|++|++.+..- .+|.+..+ .|+....+ ..+ +.-|++.+|++.+-.|=|..
T Consensus 133 ~~t~llkelr~~l~~~~~~~--~Lsvav~~-------~p~~~~~~--~yd-----~~~l~~~vD~v~lMtYD~h~ 191 (358)
T cd02875 133 ALTELVKETTKAFKKENPGY--QISFDVAW-------SPSCIDKR--CYD-----YTGIADASDFLVVMDYDEQS 191 (358)
T ss_pred HHHHHHHHHHHHHhhcCCCc--EEEEEEec-------Cccccccc--ccC-----HHHHHhhCCEeeEEeecccC
Confidence 78899999999999876432 34433221 12111100 001 12367888999999998754
No 18
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=84.97 E-value=27 Score=35.96 Aligned_cols=250 Identities=15% Similarity=0.229 Sum_probs=112.9
Q ss_pred HHHHHhhCCCCeEEEecC---C--------------------hHHHHHHhcCCCEEEEecCC--Cchhh-----h-----
Q 018955 52 VIALYNQNNIRRMRLYDP---N--------------------REALEALRGSNIEVMLGLPN--NDLRR-----I----- 96 (348)
Q Consensus 52 v~~ll~~~~~~~VRlY~~---d--------------------~~vl~A~~~~glkV~lGv~~--~~~~~-----~----- 96 (348)
+..+.+..||++||+.+. | ..++..+.+.||+-++-+.. ..+.+ +
T Consensus 45 l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~~~~~~~~ 124 (486)
T PF01229_consen 45 LRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQTVFWYKGN 124 (486)
T ss_dssp HHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--EETTTTEE
T ss_pred HHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCccccccCC
Confidence 344445678999998733 1 25788888999997665532 11100 0
Q ss_pred ---hhcH----HHHHHHHHhhccccCCCceEE--EEEecccccCCC----cchHHHHHHHHHHHHHHHHcCCCCceEEee
Q 018955 97 ---ASNQ----AEANTWVQNNVRNFANNVKFK--YIAVGNEAKPGD----NFAQYLVPAMRNIQNAINAAGLGNQIKVST 163 (348)
Q Consensus 97 ---a~~~----~~a~~wv~~~v~~~~~~~~I~--~I~VGNE~l~~~----~~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT 163 (348)
.++. +.+.++++.-+.+| +...|+ ..=|=||+=... ....+-...-+.+..+||+.. +.++|+-
T Consensus 125 ~~pp~~~~~W~~lv~~~~~h~~~RY-G~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGG 201 (486)
T PF01229_consen 125 ISPPKDYEKWRDLVRAFARHYIDRY-GIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGG 201 (486)
T ss_dssp -S-BS-HHHHHHHHHHHHHHHHHHH-HHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEE
T ss_pred cCCcccHHHHHHHHHHHHHHHHhhc-CCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccC
Confidence 0111 22333333334333 111111 345689965432 245667788888888888874 3588887
Q ss_pred eeeccccccccCCCCcccccCccchhhHHHHHHhh---cCCcccccccccccccCCCCCCccccccccCCceeccCCcch
Q 018955 164 AIETGALGESFPPSRGSFKQDYRPILDPLIRFLNE---NRSPLLLNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSY 240 (348)
Q Consensus 164 ~~~~~~~~~s~pPs~~~f~~d~~~~~~~~l~fL~~---~~d~~~vN~yPff~~~~~~~i~~~~a~f~~~~~~~~d~~~~y 240 (348)
+-. .+. . ...+...++|..+ .-||++.|.||+=.... +.-.. . .... ..
T Consensus 202 p~~--~~~--~-----------~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~---~~~~~--~----~~~~----~~ 253 (486)
T PF01229_consen 202 PAF--AWA--Y-----------DEWCEDFLEFCKGNNCPLDFISFHSYGTDSAED---INENM--Y----ERIE----DS 253 (486)
T ss_dssp EEE--ETT--------------THHHHHHHHHHHHCT---SEEEEEEE-BESESE----SS-E--E----EEB------H
T ss_pred ccc--ccc--H-----------HHHHHHHHHHHhcCCCCCCEEEEEecccccccc---cchhH--H----hhhh----hH
Confidence 611 011 0 1234555565543 45999999999632210 00000 0 0000 01
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCccEEEeeeccCCCCCCC--CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEEE--
Q 018955 241 RSLFDAILDAVYAALEKTGGGSLGIVISESGWPTAGGDG--ALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFA-- 316 (348)
Q Consensus 241 ~n~~da~~da~~~a~~~~g~~~~~v~I~ETGWPS~G~~~--~vas~~na~~y~~~~~~~~~~gtp~~~~~~~~~f~F~-- 316 (348)
..+++ ++.-++..+...+.+++++.++| |.+.-.+. .--|.-+|.-..+++++... ..++.|-+-
T Consensus 254 ~~~~~-~~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~--------~~l~~~sywt~ 322 (486)
T PF01229_consen 254 RRLFP-ELKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDG--------AFLDSFSYWTF 322 (486)
T ss_dssp HHHHH-HHHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGG--------GT-SEEEES-S
T ss_pred HHHHH-HHHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhh--------hhhhhhhccch
Confidence 11222 12223233455577899999999 77655421 01334455555555555541 123433332
Q ss_pred --eecCCCCCCCCCCCceeeecCCCCeee
Q 018955 317 --MFDENGKTGPEIERHWGLFAPTRQPRY 343 (348)
Q Consensus 317 --~fDe~wK~~~~~E~~wGl~~~d~~~ky 343 (348)
.|.|.--+...+-.-|||++.+|-+|-
T Consensus 323 sD~Fee~~~~~~pf~ggfGLlt~~gI~KP 351 (486)
T PF01229_consen 323 SDRFEENGTPRKPFHGGFGLLTKLGIPKP 351 (486)
T ss_dssp BS---TTSS-SSSSSS-S-SEECCCEE-H
T ss_pred hhhhhccCCCCCceecchhhhhccCCCch
Confidence 233332222246666999999987764
No 19
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=84.05 E-value=8.9 Score=36.85 Aligned_cols=125 Identities=16% Similarity=0.233 Sum_probs=69.4
Q ss_pred hHHHHHHhcCCCEEEEecCCCc--------hhhhhhcHHHHHHHHHhhccccCCCceEEEEEecccccCCCcchHHHHHH
Q 018955 71 REALEALRGSNIEVMLGLPNND--------LRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFAQYLVPA 142 (348)
Q Consensus 71 ~~vl~A~~~~glkV~lGv~~~~--------~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~Ll~~ 142 (348)
+.++.++++.++||++.|.+.. ...+.++++...+.+ +++..+.....+.+|.+-=|.+. .+........
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi-~~iv~~l~~~~~DGidiDwE~~~-~~d~~~~~~f 125 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLI-NNILALAKKYGYDGVNIDFENVP-PEDREAYTQF 125 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHH-HHHHHHHHHhCCCcEEEecccCC-HHHHHHHHHH
Confidence 5788888889999998887532 233444444333332 23332222223556666556553 2345678999
Q ss_pred HHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCccc-ccCccchhhHHHHHHhhcCCccccccccccc
Q 018955 143 MRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSF-KQDYRPILDPLIRFLNENRSPLLLNLYPYFA 212 (348)
Q Consensus 143 i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~f-~~d~~~~~~~~l~fL~~~~d~~~vN~yPff~ 212 (348)
|+++|++|.+.|+ .++++.. |..... ...+... -+ +.-|++.+|++.+-.|=|..
T Consensus 126 l~~lr~~l~~~~~----~lsv~~~---------p~~~~~~~~~~~~~-~~-~~~l~~~vD~v~lm~YD~~~ 181 (313)
T cd02874 126 LRELSDRLHPAGY----TLSTAVV---------PKTSADQFGNWSGA-YD-YAAIGKIVDFVVLMTYDWHW 181 (313)
T ss_pred HHHHHHHhhhcCc----EEEEEec---------Cccccccccccccc-cC-HHHHHhhCCEEEEEEeccCC
Confidence 9999999987764 3333211 110000 0000000 00 22367888999998887754
No 20
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=83.39 E-value=4 Score=40.00 Aligned_cols=174 Identities=13% Similarity=0.212 Sum_probs=72.0
Q ss_pred HHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHhhccc---cC--CCceEEEEEecccccCCC---c-chHHHHHHH
Q 018955 73 ALEALRGSNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRN---FA--NNVKFKYIAVGNEAKPGD---N-FAQYLVPAM 143 (348)
Q Consensus 73 vl~A~~~~glkV~lGv~~~~~~~~a~~~~~a~~wv~~~v~~---~~--~~~~I~~I~VGNE~l~~~---~-~~~~Ll~~i 143 (348)
+-+-+.++|++|+.|+.--.-.........-..|=-+|... |- .+-.|.+-=.|||.--.+ . .+.++..-.
T Consensus 114 l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~ 193 (319)
T PF03662_consen 114 LNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKDF 193 (319)
T ss_dssp HHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHHH
T ss_pred HHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHHH
Confidence 44445679999999997421111011123345676666443 21 234688888999965433 1 588899989
Q ss_pred HHHHHHHHHc---CCCCceEEeeeeeccccccccCCCCcccccCccchhhHHHHHHhh-cCCcccccccccccccCCCCC
Q 018955 144 RNIQNAINAA---GLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNE-NRSPLLLNLYPYFAIAGNRQI 219 (348)
Q Consensus 144 ~~v~~~L~~~---gl~~~I~VsT~~~~~~~~~s~pPs~~~f~~d~~~~~~~~l~fL~~-~~d~~~vN~yPff~~~~~~~i 219 (348)
.++|+.|+.. .+.+ -.|.-+.. .|. ...+++.|+-.-+ ..|.|.-|.|+. ....++..
T Consensus 194 ~~Lr~il~~iy~~~~~~-P~v~gP~~-------------~~d---~~w~~~FL~~~g~~~vD~vT~H~Y~l-g~g~d~~l 255 (319)
T PF03662_consen 194 IQLRKILNEIYKNALPG-PLVVGPGG-------------FFD---ADWLKEFLKASGPGVVDAVTWHHYNL-GSGRDPAL 255 (319)
T ss_dssp ---HHHHHHHHHH-TT----EEEEEE-------------SS----GGGHHHHHHHTTTT--SEEEEEEEEE---TT-TT-
T ss_pred HHHHHHHHHHHhcCCCC-CeEECCCC-------------CCC---HHHHHHHHHhcCCCccCEEEEEecCC-CCCchHHH
Confidence 8888888763 1111 23444432 111 2344555554444 378899898863 32211110
Q ss_pred CccccccccCCceeccCCcchhhHHHHHHHHHHHHHHHhCCCCccEEEeeeccCCCCC
Q 018955 220 SLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLGIVISESGWPTAGG 277 (348)
Q Consensus 220 ~~~~a~f~~~~~~~~d~~~~y~n~~da~~da~~~a~~~~g~~~~~v~I~ETGWPS~G~ 277 (348)
.+ . ..+. .|-+.+..++..+...+++.+ ++++++++|||=...|+
T Consensus 256 -~~-~--------~l~p--~~Ld~~~~~~~~~~~~v~~~~-p~~~~WlGEtg~Ay~gG 300 (319)
T PF03662_consen 256 -IE-D--------FLNP--SYLDTLADTFQKLQQVVQEYG-PGKPVWLGETGSAYNGG 300 (319)
T ss_dssp -HH-H--------HTS----HHHHHHHHHHHHH-----HH-H---EEEEEEEEESTT-
T ss_pred -HH-H--------hcCh--hhhhHHHHHHHHHhhhhcccC-CCCCeEEeCcccccCCC
Confidence 00 0 1111 122223333344444444444 78999999999887776
No 21
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=78.62 E-value=19 Score=33.50 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=45.7
Q ss_pred HHHHHHhcCCCEEEEecCCCch---hhhhhcHHHHHHHHHhhccccCCCceEEEEEecccccCCCcchHHHHHHHHHHHH
Q 018955 72 EALEALRGSNIEVMLGLPNNDL---RRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQN 148 (348)
Q Consensus 72 ~vl~A~~~~glkV~lGv~~~~~---~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~Ll~~i~~v~~ 148 (348)
..++.+++.|+||++.|..... ..+..+++...++++ ++..+.....+++|-+==|-... ..+.....++++|+
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~-~lv~~~~~~~~DGIdiDwE~~~~--~~~~~~~fv~~Lr~ 126 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVD-KIINYVVSYNLDGIDVDLEGPDV--TFGDYLVFIRALYA 126 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHH-HHHHHHHHhCCCceeEEeeccCc--cHhHHHHHHHHHHH
Confidence 4566777789999988865421 223344443333332 32222111234555554454321 14567788999999
Q ss_pred HHHHcCC
Q 018955 149 AINAAGL 155 (348)
Q Consensus 149 ~L~~~gl 155 (348)
+|++.|+
T Consensus 127 ~l~~~~~ 133 (253)
T cd06545 127 ALKKEGK 133 (253)
T ss_pred HHhhcCc
Confidence 9987764
No 22
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=78.26 E-value=3.7 Score=42.23 Aligned_cols=47 Identities=13% Similarity=0.173 Sum_probs=37.4
Q ss_pred HHHHHHHHhhCCCCeEEEe---------cC---C-------hHHHHHHhcCCCEEEEecCCCchhh
Q 018955 49 KRDVIALYNQNNIRRMRLY---------DP---N-------REALEALRGSNIEVMLGLPNNDLRR 95 (348)
Q Consensus 49 ~~~v~~ll~~~~~~~VRlY---------~~---d-------~~vl~A~~~~glkV~lGv~~~~~~~ 95 (348)
.+|+++|+++.|++.-|+= +. + .++|.+|.+.||+-++.+..-++|.
T Consensus 56 y~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 121 (469)
T PRK13511 56 YPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPE 121 (469)
T ss_pred hHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcH
Confidence 4788999999998888753 11 2 3799999999999999999866654
No 23
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=75.40 E-value=8.3 Score=34.26 Aligned_cols=82 Identities=20% Similarity=0.319 Sum_probs=44.8
Q ss_pred HHHHHhcC--CCEEEEecCCCchh---hhhhcHHHHHHHHHhhccccCCCceEEEEEecccccCCCc--chHHHHHHHHH
Q 018955 73 ALEALRGS--NIEVMLGLPNNDLR---RIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDN--FAQYLVPAMRN 145 (348)
Q Consensus 73 vl~A~~~~--glkV~lGv~~~~~~---~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~--~~~~Ll~~i~~ 145 (348)
-++.+++. |+||++.+...... .++.+.+...+.+ +++..+.....+++|-+==|.....+ ....++..|++
T Consensus 54 ~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~-~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~ 132 (210)
T cd00598 54 ALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFA-NSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRE 132 (210)
T ss_pred HHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHH-HHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHH
Confidence 44555554 99999988864322 1233333333322 22222222224555555444433211 36789999999
Q ss_pred HHHHHHHcCC
Q 018955 146 IQNAINAAGL 155 (348)
Q Consensus 146 v~~~L~~~gl 155 (348)
+|++|.+.++
T Consensus 133 lr~~l~~~~~ 142 (210)
T cd00598 133 LRSALGAANY 142 (210)
T ss_pred HHHHhcccCc
Confidence 9999977654
No 24
>PLN02998 beta-glucosidase
Probab=73.92 E-value=4.7 Score=41.90 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=36.6
Q ss_pred HHHHHHHhhCCCCeEEEe---------c---CC-------hHHHHHHhcCCCEEEEecCCCchhh
Q 018955 50 RDVIALYNQNNIRRMRLY---------D---PN-------REALEALRGSNIEVMLGLPNNDLRR 95 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY---------~---~d-------~~vl~A~~~~glkV~lGv~~~~~~~ 95 (348)
+|+++++++.|+++-|+= + .+ .+++.++.+.||+-++.++.-+++.
T Consensus 85 ~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~ 149 (497)
T PLN02998 85 KEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQ 149 (497)
T ss_pred HHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 678899999998887753 1 12 3799999999999999999866654
No 25
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=71.70 E-value=21 Score=35.00 Aligned_cols=121 Identities=14% Similarity=0.288 Sum_probs=61.2
Q ss_pred HHHhc--CCCEEEEecC--CC---chhhhhhcHHHHHHHHHhhccccCCCceEEEEEecccccCC-C---cchHHHHHHH
Q 018955 75 EALRG--SNIEVMLGLP--NN---DLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPG-D---NFAQYLVPAM 143 (348)
Q Consensus 75 ~A~~~--~glkV~lGv~--~~---~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~-~---~~~~~Ll~~i 143 (348)
.++++ .++||++.|. .. ....++++.....+.++ ++..+.....+++|.+==|-... + +....++..|
T Consensus 62 ~~lk~~~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~-~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll 140 (362)
T cd02872 62 NALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIK-SAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLL 140 (362)
T ss_pred HHHHhhCCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHH-HHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHH
Confidence 34444 5799997774 22 23344444443333332 22222111234455544343221 1 2456789999
Q ss_pred HHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhHHHHHHhhcCCcccccccccccc
Q 018955 144 RNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFAI 213 (348)
Q Consensus 144 ~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~f~~d~~~~~~~~l~fL~~~~d~~~vN~yPff~~ 213 (348)
+++|++|++.+- +..++.+.... ...+.... + +.-|++..|++.+-.|-|...
T Consensus 141 ~~lr~~l~~~~~--~~~ls~av~~~---------~~~~~~~~-d-----~~~l~~~vD~v~vmtYD~~~~ 193 (362)
T cd02872 141 KELREAFEPEAP--RLLLTAAVSAG---------KETIDAAY-D-----IPEISKYLDFINVMTYDFHGS 193 (362)
T ss_pred HHHHHHHHhhCc--CeEEEEEecCC---------hHHHhhcC-C-----HHHHhhhcceEEEecccCCCC
Confidence 999999988731 13444443211 00010000 0 122667789999999887653
No 26
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=71.06 E-value=1.1e+02 Score=30.81 Aligned_cols=90 Identities=18% Similarity=0.250 Sum_probs=48.6
Q ss_pred HHHHHHhcCCCEEEEecCCCchhhhhhc-----------------H----HHHHHHHHhhccccCCCceEEEEEeccccc
Q 018955 72 EALEALRGSNIEVMLGLPNNDLRRIASN-----------------Q----AEANTWVQNNVRNFANNVKFKYIAVGNEAK 130 (348)
Q Consensus 72 ~vl~A~~~~glkV~lGv~~~~~~~~a~~-----------------~----~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l 130 (348)
..|+++++.|+..+++.-|+-..-+..+ . .-+.+ |.+....+ +..|++|.-=||+-
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~-Vv~~~~~~--GI~f~~IsP~NEP~ 184 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLAD-VVKHYKKW--GINFDYISPFNEPQ 184 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHH-HHHHHHCT--T--EEEEE--S-TT
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHH-HHHHHHhc--CCccceeCCcCCCC
Confidence 5888888899998888776521111100 0 11111 11222222 57899999999998
Q ss_pred CCC----c-----chHHHHHHHHHHHHHHHHcCCCCceEEeeeee
Q 018955 131 PGD----N-----FAQYLVPAMRNIQNAINAAGLGNQIKVSTAIE 166 (348)
Q Consensus 131 ~~~----~-----~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~~ 166 (348)
... + ..++....|+.++.+|++.||.. +|...++
T Consensus 185 ~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t--~I~~~Ea 227 (384)
T PF14587_consen 185 WNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLST--KISACEA 227 (384)
T ss_dssp S-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S---EEEEEEE
T ss_pred CCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCc--eEEecch
Confidence 762 1 57889999999999999999975 4555555
No 27
>PLN02849 beta-glucosidase
Probab=70.79 E-value=6.3 Score=41.03 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=45.0
Q ss_pred CCCccEEEeeeccCCCCC-CCCC---CCHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEEEeecCCCCCCCCCCCceeee
Q 018955 260 GGSLGIVISESGWPTAGG-DGAL---TNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKTGPEIERHWGLF 335 (348)
Q Consensus 260 ~~~~~v~I~ETGWPS~G~-~~~v---as~~na~~y~~~~~~~~~~gtp~~~~~~~~~f~F~~fDe~wK~~~~~E~~wGl~ 335 (348)
+++.||+|+|-|++.... .+.+ -=.+--+.+.+.+.+.++.|.+.+ .||.-++.|- +.-..+.++.|||+
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~-----GY~~WSl~Dn-fEW~~Gy~~RfGLi 456 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTR-----GYFVWSFMDL-YELLKGYEFSFGLY 456 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEE-----EEeeccchhh-hchhccccCccceE
Confidence 444589999999986542 1100 112333445555555554565543 4777777774 33223489999999
Q ss_pred cCCCC
Q 018955 336 APTRQ 340 (348)
Q Consensus 336 ~~d~~ 340 (348)
.-|..
T Consensus 457 ~VD~~ 461 (503)
T PLN02849 457 SVNFS 461 (503)
T ss_pred EECCC
Confidence 98765
No 28
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=69.14 E-value=53 Score=31.66 Aligned_cols=126 Identities=14% Similarity=0.188 Sum_probs=64.0
Q ss_pred HHHHHHhc--CCCEEE--E--ecCCCc-hhhhhhcHHHHHHHHHhhccccCCCceEEEEEecc-cccCC-C--cchHHHH
Q 018955 72 EALEALRG--SNIEVM--L--GLPNND-LRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGN-EAKPG-D--NFAQYLV 140 (348)
Q Consensus 72 ~vl~A~~~--~glkV~--l--Gv~~~~-~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGN-E~l~~-~--~~~~~Ll 140 (348)
..+.++++ .++||+ + |=|... ...++++++...++++ ++..+.....+.+|-+=- |-... + +....++
T Consensus 55 ~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~-s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~ 133 (318)
T cd02876 55 GWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIK-LLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELI 133 (318)
T ss_pred HHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHH-HHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHH
Confidence 34455554 479998 4 445432 4456666655555443 333222222355554421 11111 1 2456788
Q ss_pred HHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhHHHHHHhhcCCccccccccccc
Q 018955 141 PAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFA 212 (348)
Q Consensus 141 ~~i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~f~~d~~~~~~~~l~fL~~~~d~~~vN~yPff~ 212 (348)
..|+++|++|.+.|+ .+-++.+-.... .+....+. . --+..|++.+|++.|-.|=|..
T Consensus 134 ~~l~el~~~l~~~~~--~l~~~v~~~~~~-----~~~~~~~~----~---~d~~~l~~~vD~v~lMtYD~~~ 191 (318)
T cd02876 134 QLVIHLGETLHSANL--KLILVIPPPREK-----GNQNGLFT----R---KDFEKLAPHVDGFSLMTYDYSS 191 (318)
T ss_pred HHHHHHHHHHhhcCC--EEEEEEcCcccc-----cccccccc----c---cCHHHHHhhccEEEEEeeccCC
Confidence 999999999988775 244443211100 00000111 0 0123367788999998888754
No 29
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=66.82 E-value=6.5 Score=34.77 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=26.6
Q ss_pred HHHHhhCCCCeEEEecCChHHHHHHhcCCCEEEEec
Q 018955 53 IALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGL 88 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~glkV~lGv 88 (348)
+++|+..|+++||+.+.++.-+.++.+.||+|.=-+
T Consensus 132 aqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~v 167 (169)
T PF00925_consen 132 AQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERV 167 (169)
T ss_dssp HHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE
T ss_pred HHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEe
Confidence 679999999999999999999999999999987444
No 30
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=63.92 E-value=15 Score=38.05 Aligned_cols=72 Identities=15% Similarity=0.197 Sum_probs=44.8
Q ss_pred ccEEEeeeccCCCCCC---CC---CCCHHHHHHHHHHHHHHHH-hcCCCCCCCCccEEEEEeecC-CCCCCCCCCCceee
Q 018955 263 LGIVISESGWPTAGGD---GA---LTNVDNARTYNNNLIQHVK-RGSPKRPGRPIETYIFAMFDE-NGKTGPEIERHWGL 334 (348)
Q Consensus 263 ~~v~I~ETGWPS~G~~---~~---vas~~na~~y~~~~~~~~~-~gtp~~~~~~~~~f~F~~fDe-~wK~~~~~E~~wGl 334 (348)
+||+|+|-|....... +. .-=..--+.+.+.+.+.++ .|.+.+ .||.-++.|- +|.. ++.++.|||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~-----GY~~WSl~Dn~EW~~-G~y~~RfGl 442 (478)
T PRK09593 369 KPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELL-----GYTTWGCIDLVSAGT-GEMKKRYGF 442 (478)
T ss_pred CCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEE-----EEeeccchHhhcccC-CCccCeece
Confidence 4899999999865421 10 0113344566666666663 565543 3777777774 3443 348899999
Q ss_pred ecCCCC
Q 018955 335 FAPTRQ 340 (348)
Q Consensus 335 ~~~d~~ 340 (348)
+.-|..
T Consensus 443 ~~VD~~ 448 (478)
T PRK09593 443 IYVDRD 448 (478)
T ss_pred EEECCC
Confidence 998755
No 31
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=63.89 E-value=28 Score=33.55 Aligned_cols=124 Identities=14% Similarity=0.258 Sum_probs=63.2
Q ss_pred HHHHhc--CCCEEEEecCC----CchhhhhhcHHHHHHHHHhhccccCCCceEEEEEecccccCCC-cchHHHHHHHHHH
Q 018955 74 LEALRG--SNIEVMLGLPN----NDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGD-NFAQYLVPAMRNI 146 (348)
Q Consensus 74 l~A~~~--~glkV~lGv~~----~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~-~~~~~Ll~~i~~v 146 (348)
+.++++ .++||++.|.. +....+..+.+...+.+ +++..+......++|.+==|..... +....+...|+++
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi-~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~l 135 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFI-DSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKEL 135 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHH-HHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHH
Confidence 445554 48999998765 12334444443333322 2222222222466666654443321 2455788899999
Q ss_pred HHHHHHcCC-CCceEEeeeeeccccccccCCCCcccccCccchhhHHHHHHhhcCCccccccccccc
Q 018955 147 QNAINAAGL-GNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFA 212 (348)
Q Consensus 147 ~~~L~~~gl-~~~I~VsT~~~~~~~~~s~pPs~~~f~~d~~~~~~~~l~fL~~~~d~~~vN~yPff~ 212 (348)
|+.|.+... ..+..++.+.. |...... ..-+.+.-|++.+|++.+-.|=|..
T Consensus 136 r~~l~~~~~~~~~~~lsi~v~---------~~~~~~~-----~~~~~~~~l~~~vD~v~vm~YD~~~ 188 (334)
T smart00636 136 REALDKEGAEGKGYLLTIAVP---------AGPDKID-----KGYGDLPAIAKYLDFINLMTYDFHG 188 (334)
T ss_pred HHHHHHhcccCCceEEEEEec---------CChHHHH-----hhhhhHHHHHhhCcEEEEeeeccCC
Confidence 999976410 01234444332 1111110 0001023477888999998887765
No 32
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=62.73 E-value=21 Score=36.93 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=36.9
Q ss_pred HHHHHHHHhhCCCCeEEEe---------c----CC-------hHHHHHHhcCCCEEEEecCCCchhh
Q 018955 49 KRDVIALYNQNNIRRMRLY---------D----PN-------REALEALRGSNIEVMLGLPNNDLRR 95 (348)
Q Consensus 49 ~~~v~~ll~~~~~~~VRlY---------~----~d-------~~vl~A~~~~glkV~lGv~~~~~~~ 95 (348)
.+|+++|++..|++.-|+= + .+ .++|..|.+.||+-++.++.-++|.
T Consensus 69 y~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~ 135 (476)
T PRK09589 69 YKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPY 135 (476)
T ss_pred hHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCH
Confidence 4678999999998887753 1 12 3689999999999999999876654
No 33
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=62.72 E-value=11 Score=38.94 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=44.1
Q ss_pred ccEEEeeeccCCCCC---CCCC---CCHHHHHHHHHHHHHHHH-hcCCCCCCCCccEEEEEeecC-CCCCCCCCCCceee
Q 018955 263 LGIVISESGWPTAGG---DGAL---TNVDNARTYNNNLIQHVK-RGSPKRPGRPIETYIFAMFDE-NGKTGPEIERHWGL 334 (348)
Q Consensus 263 ~~v~I~ETGWPS~G~---~~~v---as~~na~~y~~~~~~~~~-~gtp~~~~~~~~~f~F~~fDe-~wK~~~~~E~~wGl 334 (348)
+||+|+|-|...... .+.+ -=.+--+.+++.+.+.++ .|.+.+ .||.-++.|- +|.. ++..+.|||
T Consensus 369 ~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~-----GY~~WSl~DnfEw~~-G~y~~RfGl 442 (477)
T PRK15014 369 KPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLM-----GYTPWGCIDCVSFTT-GQYSKRYGF 442 (477)
T ss_pred CCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEE-----EEeeccchhhhcccC-CCccCccce
Confidence 589999999986442 1100 112334555555555553 565543 4777777774 4543 348899999
Q ss_pred ecCCCC
Q 018955 335 FAPTRQ 340 (348)
Q Consensus 335 ~~~d~~ 340 (348)
+.-|++
T Consensus 443 ~~VD~~ 448 (477)
T PRK15014 443 IYVNKH 448 (477)
T ss_pred EEECCC
Confidence 987644
No 34
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=62.67 E-value=92 Score=35.49 Aligned_cols=98 Identities=16% Similarity=0.090 Sum_probs=58.7
Q ss_pred eeeEEecCCCC---CCCCHHH---HHHHHhhCCCCeEEEec--CChHHHHHHhcCCCEEEEecCCCch-----hhhhhcH
Q 018955 34 QIGVCYGMLGN---NLPSKRD---VIALYNQNNIRRMRLYD--PNREALEALRGSNIEVMLGLPNNDL-----RRIASNQ 100 (348)
Q Consensus 34 ~~Gi~Y~~~~~---~~~s~~~---v~~ll~~~~~~~VRlY~--~d~~vl~A~~~~glkV~lGv~~~~~-----~~~a~~~ 100 (348)
..|+|+-.... ...+.++ .++++|..|++.||+-. .++..++.|-..||-|+--++.... ..+..++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 35777654321 1245544 46788999999999943 2478999999999998876543110 0011111
Q ss_pred ---HHHHHHHHhhccccCCCceEEEEEecccccC
Q 018955 101 ---AEANTWVQNNVRNFANNVKFKYIAVGNEAKP 131 (348)
Q Consensus 101 ---~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~ 131 (348)
++..+-+++.|.+...--.|..=++|||.-.
T Consensus 432 ~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~ 465 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDRNHPSIIIWSLGNESGH 465 (1027)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCCc
Confidence 1222223445555433346888999999743
No 35
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=61.94 E-value=70 Score=31.56 Aligned_cols=56 Identities=11% Similarity=0.010 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhHHHHHHhhcCCccccccccc
Q 018955 135 FAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPY 210 (348)
Q Consensus 135 ~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~f~~d~~~~~~~~l~fL~~~~d~~~vN~yPf 210 (348)
....+..+++..++.|++.. ++.+|+|-.-.. +.. ++ +. . .+++..|+++.|.||.
T Consensus 207 ~~~~~~~~~~~~~~~ir~~~--p~~~vt~n~~~~-~~~-----------~~-d~----~-~~a~~~D~~~~d~Y~~ 262 (374)
T PF02449_consen 207 QSDRVAEFFRWQADIIREYD--PDHPVTTNFMGS-WFN-----------GI-DY----F-KWAKYLDVVSWDSYPD 262 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHS--TT-EEE-EE-TT---------------SS--H----H-HHGGGSSSEEEEE-HH
T ss_pred HHHHHHHHHHHHHHHHHHhC--CCceEEeCcccc-ccC-----------cC-CH----H-HHHhhCCcceeccccC
Confidence 36778999999999999986 347898864221 000 00 11 1 1567889999999997
No 36
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=61.52 E-value=12 Score=35.95 Aligned_cols=83 Identities=19% Similarity=0.275 Sum_probs=56.7
Q ss_pred CceEEEEEecccccC----CC---c--chHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCc----cccc
Q 018955 117 NVKFKYIAVGNEAKP----GD---N--FAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRG----SFKQ 183 (348)
Q Consensus 117 ~~~I~~I~VGNE~l~----~~---~--~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~----~f~~ 183 (348)
...|+...||+|.-- |. . .++.|...+..||+.| +..+|||-+-.|+.+.. +.|..| -|.
T Consensus 17 aggVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~il-----G~~~kitYAADWsEY~~-~~p~dg~gd~~f~- 89 (299)
T PF13547_consen 17 AGGVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAIL-----GPGTKITYAADWSEYFG-YQPADGSGDVYFH- 89 (299)
T ss_pred cCCCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHh-----CCCceEEEeccCHHhcC-cCCCCCCCccccc-
Confidence 356899999999542 32 1 3578999999999886 33589999998887754 556554 232
Q ss_pred CccchhhHHHHHHhhcCCcccccccccccc
Q 018955 184 DYRPILDPLIRFLNENRSPLLLNLYPYFAI 213 (348)
Q Consensus 184 d~~~~~~~~l~fL~~~~d~~~vN~yPff~~ 213 (348)
|.|+. -....|+|+|+.|.=.+-
T Consensus 90 -----LDpLW--a~~~IDfIGID~Y~PLSD 112 (299)
T PF13547_consen 90 -----LDPLW--ADPNIDFIGIDNYFPLSD 112 (299)
T ss_pred -----Ccccc--cCCcCCEEEeecccccCC
Confidence 33443 235679999998864443
No 37
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=61.46 E-value=86 Score=29.88 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=60.4
Q ss_pred hcCCCEEEEecCCC-----chhhhhhcHHHHHHHHHhhccccCCCceEEEEEecccccCCC---cchHHHHHHHHHHHHH
Q 018955 78 RGSNIEVMLGLPNN-----DLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGD---NFAQYLVPAMRNIQNA 149 (348)
Q Consensus 78 ~~~glkV~lGv~~~-----~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~---~~~~~Ll~~i~~v~~~ 149 (348)
+..|+||++.|... ....+..+.+.... +.+++..+.....+++|-+==|..... +........|+.+|++
T Consensus 70 ~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~-f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~ 148 (343)
T PF00704_consen 70 KNPGVKVLLSIGGWGMSSDGFSQLLSNPAKRQN-FINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKA 148 (343)
T ss_dssp HHTT-EEEEEEEETTSSHHHHHHHHHSHHHHHH-HHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHH
T ss_pred hccCceEEEEeccccccccccccccccHHHHHH-HHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhh
Confidence 35699998877654 22233333322222 222222221112366777654554332 3578889999999999
Q ss_pred HHHcCCC-CceEEeeeeeccccccccCCCCcccccCccchhhHHHHHHhhcCCccccccccccc
Q 018955 150 INAAGLG-NQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFA 212 (348)
Q Consensus 150 L~~~gl~-~~I~VsT~~~~~~~~~s~pPs~~~f~~d~~~~~~~~l~fL~~~~d~~~vN~yPff~ 212 (348)
|++.+-. ....++.+....... .... .+..|.+.+|++.+-.|-|..
T Consensus 149 l~~~~~~~~~~~ls~a~p~~~~~--------------~~~~--~~~~l~~~vD~v~~m~yD~~~ 196 (343)
T PF00704_consen 149 LKRANRSGKGYILSVAVPPSPDY--------------YDKY--DYKELAQYVDYVNLMTYDYHG 196 (343)
T ss_dssp HHHHHHHHSTSEEEEEEECSHHH--------------HTTH--HHHHHHTTSSEEEEETTSSSS
T ss_pred hcccccccceeEEeecccccccc--------------cccc--ccccccccccccccccccCCC
Confidence 9885100 013444442111110 0111 234477888999999988776
No 38
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=59.91 E-value=39 Score=24.45 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHhhCCCCeEEEecCC-----hHHHHHHhcCCCEEEEecCC
Q 018955 46 LPSKRDVIALYNQNNIRRMRLYDPN-----REALEALRGSNIEVMLGLPN 90 (348)
Q Consensus 46 ~~s~~~v~~ll~~~~~~~VRlY~~d-----~~vl~A~~~~glkV~lGv~~ 90 (348)
.-++++.++..+++|++.|=+=+-+ ....+.++..|++++.|+..
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 4568899999999999998887765 34556667789999999864
No 39
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=59.60 E-value=23 Score=27.44 Aligned_cols=47 Identities=13% Similarity=0.044 Sum_probs=31.8
Q ss_pred CceEEEEEeccc-ccCC--------Cc-chHHHHHHHHHHHHHHHHcCCCCceEEeeee
Q 018955 117 NVKFKYIAVGNE-AKPG--------DN-FAQYLVPAMRNIQNAINAAGLGNQIKVSTAI 165 (348)
Q Consensus 117 ~~~I~~I~VGNE-~l~~--------~~-~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~ 165 (348)
..+|.+--|+|| +... ++ ..+.+.+.++++-+.+++.+= ..|||+..
T Consensus 8 ~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP--~~pvt~g~ 64 (88)
T PF12876_consen 8 DPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDP--SQPVTSGF 64 (88)
T ss_dssp GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-T--TS-EE--B
T ss_pred CCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCC--CCcEEeec
Confidence 568999999999 6521 11 367899999999999988753 57887653
No 40
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=59.07 E-value=1.5e+02 Score=30.82 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=39.7
Q ss_pred HHhhccccCC-CceEEEEEecccccCC------Cc----chHHHHHHHHH-HHHHHHHcCCCCceEEee
Q 018955 107 VQNNVRNFAN-NVKFKYIAVGNEAKPG------DN----FAQYLVPAMRN-IQNAINAAGLGNQIKVST 163 (348)
Q Consensus 107 v~~~v~~~~~-~~~I~~I~VGNE~l~~------~~----~~~~Ll~~i~~-v~~~L~~~gl~~~I~VsT 163 (348)
+.+-|+.|.. +-.|-+|++.||+... .+ +++++...|++ +.-+|++.|++.++|+=.
T Consensus 210 ~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~ 278 (496)
T PF02055_consen 210 FVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILI 278 (496)
T ss_dssp HHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEE
T ss_pred HHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 4444555532 5679999999999852 12 58889999986 999999999855688744
No 41
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=56.59 E-value=1.4e+02 Score=26.24 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=30.2
Q ss_pred HHHHHHHhhCCCCeEEE----------ecC------------C--hHHHHHHhcCCCEEEEecCCC
Q 018955 50 RDVIALYNQNNIRRMRL----------YDP------------N--REALEALRGSNIEVMLGLPNN 91 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRl----------Y~~------------d--~~vl~A~~~~glkV~lGv~~~ 91 (348)
.+.++.+++.|++.|=+ |.+ | ..+|+++.+.||||++|++.+
T Consensus 23 ~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 23 REEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 34567778888877722 211 1 357888889999999999975
No 42
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.44 E-value=37 Score=33.92 Aligned_cols=57 Identities=18% Similarity=0.406 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCccEEEeeeccCCCCC-CCC---CCCHHHHHHHHHHHHHHHH
Q 018955 240 YRSLFDAILDAVYAALEKTGGGSLGIVISESGWPTAGG-DGA---LTNVDNARTYNNNLIQHVK 299 (348)
Q Consensus 240 y~n~~da~~da~~~a~~~~g~~~~~v~I~ETGWPS~G~-~~~---vas~~na~~y~~~~~~~~~ 299 (348)
|.|-|++.+--....+.-.|.+..+|+.+ |||+|. .++ ..|-..++.-+..+++.++
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La 185 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLA 185 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHH
Confidence 45666544433333334556777888887 999998 221 3555666666777777665
No 43
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=54.98 E-value=34 Score=35.38 Aligned_cols=46 Identities=26% Similarity=0.358 Sum_probs=36.0
Q ss_pred HHHHHHHhhCCCCeEEEe-------c------CC-------hHHHHHHhcCCCEEEEecCCCchhh
Q 018955 50 RDVIALYNQNNIRRMRLY-------D------PN-------REALEALRGSNIEVMLGLPNNDLRR 95 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY-------~------~d-------~~vl~A~~~~glkV~lGv~~~~~~~ 95 (348)
++++++++..|++..|+= - .+ .+++.++.+.||+.++.+..-++|.
T Consensus 74 ~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~ 139 (474)
T PRK09852 74 KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPM 139 (474)
T ss_pred HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 678899999888777752 1 13 3689999999999999999866654
No 44
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=54.72 E-value=20 Score=32.38 Aligned_cols=33 Identities=18% Similarity=0.454 Sum_probs=29.9
Q ss_pred HHHHhhCCCCeEEEecCChHHHHHHhcCCCEEE
Q 018955 53 IALYNQNNIRRMRLYDPNREALEALRGSNIEVM 85 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~glkV~ 85 (348)
+++|+..|+++||+.+..+.=+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 679999999999999998877889999999987
No 45
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=53.68 E-value=21 Score=32.43 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=30.1
Q ss_pred HHHHhhCCCCeEEEecCChHHHHHHhcCCCEEE
Q 018955 53 IALYNQNNIRRMRLYDPNREALEALRGSNIEVM 85 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~glkV~ 85 (348)
+++|+..|++++|+.+..+.-+.++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 679999999999999998877889999999997
No 46
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=52.12 E-value=56 Score=33.94 Aligned_cols=180 Identities=13% Similarity=0.077 Sum_probs=98.4
Q ss_pred HHHHhhccccCCCceEEEEEecccccCCC-cchHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCccccc
Q 018955 105 TWVQNNVRNFANNVKFKYIAVGNEAKPGD-NFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQ 183 (348)
Q Consensus 105 ~wv~~~v~~~~~~~~I~~I~VGNE~l~~~-~~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~f~~ 183 (348)
+.+..-|.+|--...|.+-..-||.|.+. .+..+++...+...+-++..+-++ .|+.-|...-|.. |+|
T Consensus 124 kyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~h--lvsvGD~~sp~~~--------~~p 193 (587)
T COG3934 124 KYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGH--LVSVGDPASPWPQ--------YAP 193 (587)
T ss_pred HHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCC--eeecCCcCCcccc--------cCC
Confidence 33444455554455677888899988854 367888888888888888876555 3444343222322 221
Q ss_pred CccchhhHHHHHHhhcCCcccccccccccccCCCCCCccccccccCCceeccCCcchhh-HHHHHHHHHHHHHHHhCCCC
Q 018955 184 DYRPILDPLIRFLNENRSPLLLNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRS-LFDAILDAVYAALEKTGGGS 262 (348)
Q Consensus 184 d~~~~~~~~l~fL~~~~d~~~vN~yPff~~~~~~~i~~~~a~f~~~~~~~~d~~~~y~n-~~da~~da~~~a~~~~g~~~ 262 (348)
-. .-.++||=.-|+||+|+... ++... ..|-. .+ |-- ..+| -
T Consensus 194 yN----------~r~~vDya~~hLY~hyd~sl-------~~r~s----------~~yg~~~l----~i~----~~~g--~ 236 (587)
T COG3934 194 YN----------ARFYVDYAANHLYRHYDTSL-------VSRVS----------TVYGKPYL----DIP----TIMG--W 236 (587)
T ss_pred cc----------cceeeccccchhhhhccCCh-------hheee----------eeecchhh----ccc----hhcc--c
Confidence 10 11256899999999877531 11110 01100 11 100 1222 3
Q ss_pred ccEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCccEEEEEeecCCCC-C-C-----CCCCCceeee
Q 018955 263 LGIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGK-T-G-----PEIERHWGLF 335 (348)
Q Consensus 263 ~~v~I~ETGWPS~G~~~~vas~~na~~y~~~~~~~~~~gtp~~~~~~~~~f~F~~fDe~wK-~-~-----~~~E~~wGl~ 335 (348)
+||+.-|-|-|++-+ .+|.+.|+-.+...+.. +-+-=+|..|++--. + + ...|-.|||.
T Consensus 237 ~pV~leefGfsta~g------~e~s~ayfiw~~lal~~--------ggdGaLiwclsdf~~gsdd~ey~w~p~el~fgiI 302 (587)
T COG3934 237 QPVNLEEFGFSTAFG------QENSPAYFIWIRLALDT--------GGDGALIWCLSDFHLGSDDSEYTWGPMELEFGII 302 (587)
T ss_pred ceeeccccCCccccc------ccccchhhhhhhhHHhh--------cCCceEEEEecCCccCCCCCCCccccccceeeee
Confidence 699999999998733 23333343333332211 111123444443321 1 1 2378899999
Q ss_pred cCCCCeeeec
Q 018955 336 APTRQPRYQI 345 (348)
Q Consensus 336 ~~d~~~ky~l 345 (348)
+.|+.+|+..
T Consensus 303 radgpek~~a 312 (587)
T COG3934 303 RADGPEKIDA 312 (587)
T ss_pred cCCCchhhhH
Confidence 9999999864
No 47
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=49.47 E-value=42 Score=24.96 Aligned_cols=42 Identities=12% Similarity=0.270 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhccccCCCceEEEEEecccccCCCc----chHHHHHHHHHHHHHHHHc
Q 018955 100 QAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDN----FAQYLVPAMRNIQNAINAA 153 (348)
Q Consensus 100 ~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~----~~~~Ll~~i~~v~~~L~~~ 153 (348)
.+....|++.||.- |+|.+++++ ..+.|+|+|+..++.++..
T Consensus 10 L~iLi~WLedNi~~------------es~iiFDNded~tdSa~llp~ie~a~~~~r~l 55 (65)
T PF06117_consen 10 LEILIAWLEDNIDC------------ESDIIFDNDEDKTDSAALLPAIEQARADVRPL 55 (65)
T ss_pred HHHHHHHHHcccCC------------CCCeeecCCCcccchHHHHHHHHHHHHHHHHH
Confidence 45677899988764 566666542 4778999999999887654
No 48
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=48.81 E-value=1.8e+02 Score=29.34 Aligned_cols=59 Identities=15% Similarity=0.276 Sum_probs=35.4
Q ss_pred chHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhHHHHHHhhcCCcccccccccccc
Q 018955 135 FAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFAI 213 (348)
Q Consensus 135 ~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~f~~d~~~~~~~~l~fL~~~~d~~~vN~yPff~~ 213 (348)
..+.++..|+++|++|...++ .+.++.+-... +...| + +..|++.+|++.+-.|=|+..
T Consensus 167 d~~nf~~Ll~elr~~l~~~~~--~ls~av~~~~~--------~~~~~-----d-----~~~l~~~vD~inlMtYD~~g~ 225 (413)
T cd02873 167 HKEQFTALVRELKNALRPDGL--LLTLTVLPHVN--------STWYF-----D-----VPAIANNVDFVNLATFDFLTP 225 (413)
T ss_pred HHHHHHHHHHHHHHHhcccCc--EEEEEecCCch--------hcccc-----C-----HHHHhhcCCEEEEEEecccCC
Confidence 456688899999999987765 13332211000 00001 1 233677889999999988653
No 49
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=47.26 E-value=84 Score=29.05 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=23.6
Q ss_pred HHhCCCCccEEEeeeccCCCCC-CCC---CCCHHHHHHHHHHHHHHHH
Q 018955 256 EKTGGGSLGIVISESGWPTAGG-DGA---LTNVDNARTYNNNLIQHVK 299 (348)
Q Consensus 256 ~~~g~~~~~v~I~ETGWPS~G~-~~~---vas~~na~~y~~~~~~~~~ 299 (348)
..+++++.+|.. .|||.|. .++ ..+.......+..+++.+.
T Consensus 43 ~~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~ 87 (233)
T PF05990_consen 43 HDLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLA 87 (233)
T ss_pred HHhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 456677655555 5999997 221 2344445555566665553
No 50
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=44.71 E-value=50 Score=29.97 Aligned_cols=81 Identities=20% Similarity=0.370 Sum_probs=44.7
Q ss_pred HHHHHHHhhccccCCCceEEEEEecccccCCCcchHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCccc
Q 018955 102 EANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSF 181 (348)
Q Consensus 102 ~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~f 181 (348)
...+|+.+.+..+ +...+....+- ....-.+++.+...+...|+.+ |++.+.... +
T Consensus 56 ~~n~~~~~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~G-v~l~~~~~~-------------~ 111 (273)
T PF04909_consen 56 GFNDWLVELAAKH-PDRFIGFAAIP---------PPDPEDAVEELERALQELGFRG-VKLHPDLGG-------------F 111 (273)
T ss_dssp HHHHHHHHHHHHS-TTTEEEEEEET---------TTSHHHHHHHHHHHHHTTTESE-EEEESSETT-------------C
T ss_pred HHHHHHHHHHHHc-CCCEEEEEEec---------CCCchhHHHHHHHhccccceee-eEecCCCCc-------------c
Confidence 4455666666665 33333332221 1113357778888888888875 777664311 1
Q ss_pred ccCccchh-hHHHHHHhhcCCcccccc
Q 018955 182 KQDYRPIL-DPLIRFLNENRSPLLLNL 207 (348)
Q Consensus 182 ~~d~~~~~-~~~l~fL~~~~d~~~vN~ 207 (348)
..+ .+.. +++++.+.+.+=++.+|+
T Consensus 112 ~~~-~~~~~~~~~~~~~~~~~pv~~H~ 137 (273)
T PF04909_consen 112 DPD-DPRLDDPIFEAAEELGLPVLIHT 137 (273)
T ss_dssp CTT-SGHCHHHHHHHHHHHT-EEEEEE
T ss_pred ccc-cHHHHHHHHHHHHhhccceeeec
Confidence 111 1233 488888888887777764
No 51
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=44.08 E-value=35 Score=30.72 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=30.9
Q ss_pred HHHHhhCCCCeEEEecCChHHHHHHhcCCCEEEEec
Q 018955 53 IALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGL 88 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~glkV~lGv 88 (348)
+++|+..|++.+|+.+..+.-+.++.+.|++|.==+
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERV 168 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 679999999999999998777889999999997333
No 52
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=41.60 E-value=2.9e+02 Score=28.08 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhHHHHHHhhcCCcccccccccc
Q 018955 135 FAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYF 211 (348)
Q Consensus 135 ~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~f~~d~~~~~~~~l~fL~~~~d~~~vN~yPff 211 (348)
+.++.+..++.+|++. . ++.+++.. +. ++| | +-.+.+...++|+.+ ..+-.+++|+|-
T Consensus 270 ~~~~~~~~v~~lr~~~----~--~i~i~~d~----Iv-G~P---g----Et~ed~~~tl~~i~~-l~~~~i~~f~ys 327 (440)
T PRK14334 270 RREKYLERIAEIREAL----P--DVVLSTDI----IV-GFP---G----ETEEDFQETLSLYDE-VGYDSAYMFIYS 327 (440)
T ss_pred CHHHHHHHHHHHHHhC----C--CcEEEEeE----EE-ECC---C----CCHHHHHHHHHHHHh-cCCCEeeeeEee
Confidence 5777888888887652 2 25555543 22 243 1 112345667777654 345567777753
No 53
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.55 E-value=68 Score=29.53 Aligned_cols=84 Identities=17% Similarity=0.310 Sum_probs=54.3
Q ss_pred CCCeeeEEecCCCCCCCCHHHHHHHHhhCCCCeEEEecCC-----hHHHHHHhcCCCEEEEecCCCchhhhhhcHHHHHH
Q 018955 31 TSAQIGVCYGMLGNNLPSKRDVIALYNQNNIRRMRLYDPN-----REALEALRGSNIEVMLGLPNNDLRRIASNQAEANT 105 (348)
Q Consensus 31 ~~~~~Gi~Y~~~~~~~~s~~~v~~ll~~~~~~~VRlY~~d-----~~vl~A~~~~glkV~lGv~~~~~~~~a~~~~~a~~ 105 (348)
.-..+||.|-...=.++. .--.++++++- ..+..+....-+.++|..-..+..++ +.+..
T Consensus 41 ~~sTiGIDFk~kti~l~g-----------~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sf----eni~~ 105 (207)
T KOG0078|consen 41 FISTIGIDFKIKTIELDG-----------KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSF----ENIRN 105 (207)
T ss_pred ccceEEEEEEEEEEEeCC-----------eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHH----HHHHH
Confidence 455677777655422332 12456677774 46888877766788887766554443 45666
Q ss_pred HHHhhccccCCCceEEEEEecccccC
Q 018955 106 WVQNNVRNFANNVKFKYIAVGNEAKP 131 (348)
Q Consensus 106 wv~~~v~~~~~~~~I~~I~VGNE~l~ 131 (348)
|+ ++|..|.+ ..+.-+.|||-.=.
T Consensus 106 W~-~~I~e~a~-~~v~~~LvGNK~D~ 129 (207)
T KOG0078|consen 106 WI-KNIDEHAS-DDVVKILVGNKCDL 129 (207)
T ss_pred HH-HHHHhhCC-CCCcEEEeeccccc
Confidence 86 47787765 47889999998643
No 54
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=39.54 E-value=54 Score=33.79 Aligned_cols=47 Identities=13% Similarity=0.148 Sum_probs=36.6
Q ss_pred HHHHHHHHhhCCCCeEEEe-------c--C---C-------hHHHHHHhcCCCEEEEecCCCchhh
Q 018955 49 KRDVIALYNQNNIRRMRLY-------D--P---N-------REALEALRGSNIEVMLGLPNNDLRR 95 (348)
Q Consensus 49 ~~~v~~ll~~~~~~~VRlY-------~--~---d-------~~vl~A~~~~glkV~lGv~~~~~~~ 95 (348)
.+++++|++..|++.-|+= - . + .+++..|.+.||+-++.+..-+++.
T Consensus 55 y~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 55 YPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred HHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 4778999999988877753 1 1 2 3689999999999999999866654
No 55
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=39.51 E-value=4e+02 Score=26.60 Aligned_cols=137 Identities=12% Similarity=0.173 Sum_probs=68.3
Q ss_pred CCCHHHHHH---HHhhCCCCeEEEecC-------C-------hHHHHHHhcC-CC-EEEEecCCCchhhhhhcHHHHHHH
Q 018955 46 LPSKRDVIA---LYNQNNIRRMRLYDP-------N-------REALEALRGS-NI-EVMLGLPNNDLRRIASNQAEANTW 106 (348)
Q Consensus 46 ~~s~~~v~~---ll~~~~~~~VRlY~~-------d-------~~vl~A~~~~-gl-kV~lGv~~~~~~~~a~~~~~a~~w 106 (348)
.-++++|++ .+...|++.|.+.+. | ..+++++... |+ .+-++--. ...+. .+.+ +.
T Consensus 166 ~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~--p~~~~--~ell-~~ 240 (414)
T TIGR01579 166 SVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSID--PEDID--EELL-EA 240 (414)
T ss_pred cCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCC--hhhCC--HHHH-HH
Confidence 456777765 334468999998542 2 2566666543 44 24444211 11111 2222 22
Q ss_pred HHhhccccCCCceEEEEEecccccCC--------CcchHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCC
Q 018955 107 VQNNVRNFANNVKFKYIAVGNEAKPG--------DNFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSR 178 (348)
Q Consensus 107 v~~~v~~~~~~~~I~~I~VGNE~l~~--------~~~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~ 178 (348)
++++ +.....+.+|=|-... +.+.++...+++.+|+.. . .+.+++.. +. ++|
T Consensus 241 m~~~------~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~--~----gi~i~~~~----Iv-G~P--- 300 (414)
T TIGR01579 241 IASE------KRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVR--P----DYAFGTDI----IV-GFP--- 300 (414)
T ss_pred HHhc------CccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhC--C----CCeeeeeE----EE-ECC---
Confidence 3321 0112355555554332 235677788888887632 2 25666543 21 243
Q ss_pred cccccCccchhhHHHHHHhhcCCccccccccccc
Q 018955 179 GSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFA 212 (348)
Q Consensus 179 ~~f~~d~~~~~~~~l~fL~~~~d~~~vN~yPff~ 212 (348)
.+-.+.+...++|+.+. .+-.+++|||--
T Consensus 301 ----gET~ed~~~tl~~i~~~-~~~~~~~~~~sp 329 (414)
T TIGR01579 301 ----GESEEDFQETLRMVKEI-EFSHLHIFPYSA 329 (414)
T ss_pred ----CCCHHHHHHHHHHHHhC-CCCEEEeeecCC
Confidence 11124566778877653 455667777633
No 56
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=37.38 E-value=41 Score=33.70 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=28.7
Q ss_pred HHHHhhCCCCeEEEecCChHHHHHHhcCCCEEE
Q 018955 53 IALYNQNNIRRMRLYDPNREALEALRGSNIEVM 85 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~glkV~ 85 (348)
+++|+..|+++|||. +++.=+.++.+.||+|.
T Consensus 331 AqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 331 AQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 679999999999999 67877888999999987
No 57
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=36.74 E-value=40 Score=32.81 Aligned_cols=253 Identities=16% Similarity=0.149 Sum_probs=126.8
Q ss_pred CCCeeeEEecCCCCCCCCHHHHHHHHhhCCCCeEEEe---------------cCC--hHHHHHHhcCCCEEE--EecCCC
Q 018955 31 TSAQIGVCYGMLGNNLPSKRDVIALYNQNNIRRMRLY---------------DPN--REALEALRGSNIEVM--LGLPNN 91 (348)
Q Consensus 31 ~~~~~Gi~Y~~~~~~~~s~~~v~~ll~~~~~~~VRlY---------------~~d--~~vl~A~~~~glkV~--lGv~~~ 91 (348)
....+|.+..... +....+..+++.+. |+.|=.= +.+ ..++.-++..||+|- .=+|..
T Consensus 8 ~~f~~G~av~~~~--~~~~~~~~~~~~~~-Fn~~t~eN~~Kw~~~e~~~g~~~~~~~D~~~~~a~~~g~~vrGH~LvW~~ 84 (320)
T PF00331_consen 8 HKFPFGAAVNAQQ--LEDDPRYRELFAKH-FNSVTPENEMKWGSIEPEPGRFNFESADAILDWARENGIKVRGHTLVWHS 84 (320)
T ss_dssp TTTEEEEEEBGGG--HTHHHHHHHHHHHH--SEEEESSTTSHHHHESBTTBEE-HHHHHHHHHHHHTT-EEEEEEEEESS
T ss_pred ccCCEEEEechhH--cCCcHHHHHHHHHh-CCeeeeccccchhhhcCCCCccCccchhHHHHHHHhcCcceeeeeEEEcc
Confidence 3457788877664 22222455555432 3333221 111 357777888998875 456655
Q ss_pred chhhhhh------------cHHHHHHHHHhhccccCCC-ceEEEEEecccccCCCc--------c------hHHHHHHHH
Q 018955 92 DLRRIAS------------NQAEANTWVQNNVRNFANN-VKFKYIAVGNEAKPGDN--------F------AQYLVPAMR 144 (348)
Q Consensus 92 ~~~~~a~------------~~~~a~~wv~~~v~~~~~~-~~I~~I~VGNE~l~~~~--------~------~~~Ll~~i~ 144 (348)
..+.... -.+...++|++-+..| .+ .+|...-|=||++..+. . +..+..+.+
T Consensus 85 ~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~ 163 (320)
T PF00331_consen 85 QTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIADAFR 163 (320)
T ss_dssp SS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHHHHHH
T ss_pred cccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCccccccCChhhhcccHhHHHHHHH
Confidence 4333111 1334556666655555 43 48999999999998531 1 345566777
Q ss_pred HHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhHHHHHHhhcCCc---ccccccccccccCCCCCCc
Q 018955 145 NIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSP---LLLNLYPYFAIAGNRQISL 221 (348)
Q Consensus 145 ~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~f~~d~~~~~~~~l~fL~~~~d~---~~vN~yPff~~~~~~~i~~ 221 (348)
..|++..+ ++.-.-| ++++. + +-...+..+++.|.+.+-+ +++-.|
T Consensus 164 ~A~~~~P~------a~L~~ND-y~~~~----~-------~k~~~~~~lv~~l~~~gvpIdgIG~Q~H------------- 212 (320)
T PF00331_consen 164 AAREADPN------AKLFYND-YNIES----P-------AKRDAYLNLVKDLKARGVPIDGIGLQSH------------- 212 (320)
T ss_dssp HHHHHHTT------SEEEEEE-SSTTS----T-------HHHHHHHHHHHHHHHTTHCS-EEEEEEE-------------
T ss_pred HHHHhCCC------cEEEecc-ccccc----h-------HHHHHHHHHHHHHHhCCCccceechhhc-------------
Confidence 77776542 3333322 11111 1 0022345666666554332 222111
Q ss_pred cccccccCCceeccCCcchhhHHHHHHHHHHHHHHHhCCCCccEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 018955 222 DYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLGIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKRG 301 (348)
Q Consensus 222 ~~a~f~~~~~~~~d~~~~y~n~~da~~da~~~a~~~~g~~~~~v~I~ETGWPS~G~~~~vas~~na~~y~~~~~~~~~~g 301 (348)
... + + . .+.+...|+++.--+++|.|||--=.+..........+.|+.+++.+++.+.+
T Consensus 213 ----------~~~--~--~-~-----~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~- 271 (320)
T PF00331_consen 213 ----------FDA--G--Y-P-----PEQIWNALDRFASLGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFS- 271 (320)
T ss_dssp ----------EET--T--S-S-----HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHH-
T ss_pred ----------cCC--C--C-C-----HHHHHHHHHHHHHcCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHh-
Confidence 100 0 0 1 23334444544445689999997554443311014467788899999988752
Q ss_pred CCCCC-CCCccEEEEE-eecCC-CCCCCCCCCceeeecCCCCeeee
Q 018955 302 SPKRP-GRPIETYIFA-MFDEN-GKTGPEIERHWGLFAPTRQPRYQ 344 (348)
Q Consensus 302 tp~~~-~~~~~~f~F~-~fDe~-wK~~~~~E~~wGl~~~d~~~ky~ 344 (348)
.| . .+.-+.+. ..|.. |.+... -.+=+||+.|.+||..
T Consensus 272 ---~~~~-~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 272 ---HPPA-AVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQPKPA 312 (320)
T ss_dssp ---TTHC-TEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSBB-HH
T ss_pred ---CCcc-CCCEEEEECCCCCCcccCCCC-CCCCeeECCCcCCCHH
Confidence 12 1 35555555 55533 554201 1223799999999964
No 58
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=36.36 E-value=4.8e+02 Score=26.62 Aligned_cols=193 Identities=12% Similarity=0.157 Sum_probs=92.1
Q ss_pred CCCHHHHHH---HHhhCCCCeEEEecCC-----------hHHHHHHhc-CCC-EEEEecCCCchhhhhhcHHHHHHHHHh
Q 018955 46 LPSKRDVIA---LYNQNNIRRMRLYDPN-----------REALEALRG-SNI-EVMLGLPNNDLRRIASNQAEANTWVQN 109 (348)
Q Consensus 46 ~~s~~~v~~---ll~~~~~~~VRlY~~d-----------~~vl~A~~~-~gl-kV~lGv~~~~~~~~a~~~~~a~~wv~~ 109 (348)
..+++++++ .+...|++.|.+.+-+ ...|+.+.. .++ .+-++..+. ..+. .+ ..+.+++
T Consensus 182 sr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p--~~~~--~e-ll~~m~~ 256 (449)
T PRK14332 182 SRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLDETTIERIRFTSPHP--KDFP--DH-LLSLMAK 256 (449)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhcCCCcceEEEECCCc--ccCC--HH-HHHHHHh
Confidence 345677754 3345689999988654 245555433 232 333333221 1121 11 2222222
Q ss_pred hccccCCCceEEEEEeccc-----ccC---CCcchHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCccc
Q 018955 110 NVRNFANNVKFKYIAVGNE-----AKP---GDNFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSF 181 (348)
Q Consensus 110 ~v~~~~~~~~I~~I~VGNE-----~l~---~~~~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~f 181 (348)
. + .....+.+|=| +|- |+.+.++...+++.+|++. + ++.++|.. +. +||
T Consensus 257 ~-----~-~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~-----p-~i~i~td~----Iv-GfP------ 313 (449)
T PRK14332 257 N-----P-RFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIV-----P-DVGITTDI----IV-GFP------ 313 (449)
T ss_pred C-----C-CccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhC-----C-CCEEEEEE----Ee-eCC------
Confidence 1 1 12456777733 332 2336788889999888863 1 35666542 22 244
Q ss_pred ccCccchhhHHHHHHhhcCCcccccccccccccCCCCCCccccccccCCceeccCCcchhhHHHHHHHHHHHHHHHhCCC
Q 018955 182 KQDYRPILDPLIRFLNENRSPLLLNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGG 261 (348)
Q Consensus 182 ~~d~~~~~~~~l~fL~~~~d~~~vN~yPff~~~~~~~i~~~~a~f~~~~~~~~d~~~~y~n~~da~~da~~~a~~~~g~~ 261 (348)
.+-...+...++|+. ...+=.+++|+|--..... .+..+. ..........++..+.+-|-+-.....++.=++
T Consensus 314 -gET~edf~~tl~~v~-~l~~~~~~~f~ys~~~GT~----a~~~~~-~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~vG~ 386 (449)
T PRK14332 314 -NETEEEFEDTLAVVR-EVQFDMAFMFKYSEREGTM----AKRKLP-DNVPEEVKSARLTKLVDLQTSISHEQNRARIGR 386 (449)
T ss_pred -CCCHHHHHHHHHHHH-hCCCCEEEEEEecCCCCCh----hHHhCc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 111235566777664 4445566777764432110 000111 111111222345555555544444444444346
Q ss_pred CccEEEeeeccC
Q 018955 262 SLGIVISESGWP 273 (348)
Q Consensus 262 ~~~v~I~ETGWP 273 (348)
..+|+|.+.+..
T Consensus 387 ~~~vlve~~~~~ 398 (449)
T PRK14332 387 VYSILIENTSRK 398 (449)
T ss_pred EEEEEEEeccCC
Confidence 778888765443
No 59
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=36.31 E-value=50 Score=33.31 Aligned_cols=38 Identities=26% Similarity=0.354 Sum_probs=33.0
Q ss_pred HHHHhhCCCCeEEEecCChHHHHHHhcCCCEEEEecCC
Q 018955 53 IALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGLPN 90 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~glkV~lGv~~ 90 (348)
+++|+..|+++||+.+.++.=+.++.+.||+|.=-++.
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl 357 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPL 357 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 67999999999999999998888999999999854443
No 60
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=36.12 E-value=75 Score=31.22 Aligned_cols=76 Identities=24% Similarity=0.252 Sum_probs=50.7
Q ss_pred hHHHHHHhcCC-CEEEEecCCCchhhhhhcHHHHHHHHHhhccccCCCceEEEEEecccccCCCcchHHHHHHHHHHHHH
Q 018955 71 REALEALRGSN-IEVMLGLPNNDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNA 149 (348)
Q Consensus 71 ~~vl~A~~~~g-lkV~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~Ll~~i~~v~~~ 149 (348)
..||+++...| +++ +|=.-.+.+ .++.+.+|+...+.+++ ..|.+|+--|.-...+ + -++
T Consensus 175 m~VLkp~idsGkik~-~Ge~~~d~W----~ps~Aq~~men~lta~~--~~vdaVvA~nDgtagG--------a----I~a 235 (341)
T COG4213 175 MKVLKPLIDSGKIKV-VGEQWTDGW----LPSNAQQIMENLLTANY--NDIDAVVAPNDGTAGG--------A----IAA 235 (341)
T ss_pred HHHHHHHhhCCceEE-eeecccccc----CHHHHHHHHHHHHhccc--CceeEEEcCCCchhHH--------H----HHH
Confidence 47898888777 666 665433322 25667777777777764 3498988887744332 2 246
Q ss_pred HHHcCCCCceEEeeee
Q 018955 150 INAAGLGNQIKVSTAI 165 (348)
Q Consensus 150 L~~~gl~~~I~VsT~~ 165 (348)
|++.||++.+|||=-|
T Consensus 236 L~a~Gl~g~vpVsGQD 251 (341)
T COG4213 236 LKAQGLAGKVPVSGQD 251 (341)
T ss_pred HHhcccCCCCcccCcc
Confidence 7788999889987544
No 61
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=35.93 E-value=3.6e+02 Score=25.61 Aligned_cols=140 Identities=14% Similarity=0.185 Sum_probs=70.0
Q ss_pred CCCHHHHHHHHhhCCCCeEEEecCC-------hHHHHHH---hcCCCEEEEecCCCch---hhhhhcHHHHHHHHHhhcc
Q 018955 46 LPSKRDVIALYNQNNIRRMRLYDPN-------REALEAL---RGSNIEVMLGLPNNDL---RRIASNQAEANTWVQNNVR 112 (348)
Q Consensus 46 ~~s~~~v~~ll~~~~~~~VRlY~~d-------~~vl~A~---~~~glkV~lGv~~~~~---~~~a~~~~~a~~wv~~~v~ 112 (348)
.+++.+.++-|+..|++.|-+-++. ..+.+.+ +..--++.+|-|.=.. ..-..+.+.+.+-+.+.+.
T Consensus 57 i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~~ 136 (262)
T PF06180_consen 57 IDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEFP 136 (262)
T ss_dssp ---HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS-
T ss_pred cCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHhcc
Confidence 5899999999999999999999886 2444443 3334689999886211 0011222333332333333
Q ss_pred ccCCCceEEEEEecccccCCCcchHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhHH
Q 018955 113 NFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPL 192 (348)
Q Consensus 113 ~~~~~~~I~~I~VGNE~l~~~~~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~f~~d~~~~~~~~ 192 (348)
.-.++.-+..+-=||+-- . -..-..++..|++.|.. ++-|+|.+ ++| -+..+
T Consensus 137 ~~~~~~a~vlmGHGt~h~-----a---n~~Y~~l~~~l~~~~~~-~v~vgtvE-------G~P------------~~~~v 188 (262)
T PF06180_consen 137 KKRKDEAVVLMGHGTPHP-----A---NAAYSALQAMLKKHGYP-NVFVGTVE-------GYP------------SLEDV 188 (262)
T ss_dssp TT-TTEEEEEEE---SCH-----H---HHHHHHHHHHHHCCT-T-TEEEEETT-------SSS------------BHHHH
T ss_pred ccCCCCEEEEEeCCCCCC-----c---cHHHHHHHHHHHhCCCC-eEEEEEeC-------CCC------------CHHHH
Confidence 221334444444454321 1 12334556778887765 59999986 243 24556
Q ss_pred HHHHhhcCCccccccccccccc
Q 018955 193 IRFLNENRSPLLLNLYPYFAIA 214 (348)
Q Consensus 193 l~fL~~~~d~~~vN~yPff~~~ 214 (348)
+..|.+. .+=-|.+.||.--.
T Consensus 189 i~~L~~~-g~k~V~L~PlMlVA 209 (262)
T PF06180_consen 189 IARLKKK-GIKKVHLIPLMLVA 209 (262)
T ss_dssp HHHHHHH-T-SEEEEEEESSS-
T ss_pred HHHHHhc-CCCeEEEEeccccc
Confidence 6666543 34458899987643
No 62
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=35.68 E-value=49 Score=32.76 Aligned_cols=34 Identities=12% Similarity=0.279 Sum_probs=30.4
Q ss_pred HHHHHhhCCCCeEEEecCC-hHHHHHHhcCCCEEE
Q 018955 52 VIALYNQNNIRRMRLYDPN-REALEALRGSNIEVM 85 (348)
Q Consensus 52 v~~ll~~~~~~~VRlY~~d-~~vl~A~~~~glkV~ 85 (348)
-.++|+..|+++||+.+.+ +.=+.++.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 3689999999999999998 887889999999986
No 63
>PRK08815 GTP cyclohydrolase; Provisional
Probab=35.23 E-value=53 Score=33.00 Aligned_cols=37 Identities=32% Similarity=0.395 Sum_probs=31.9
Q ss_pred HHHHhhCCCCeEEEecCChHHHHHHhcCCCEEEEecC
Q 018955 53 IALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGLP 89 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~glkV~lGv~ 89 (348)
+++|+..|+++||+.+.++.=+.++.+.||+|.==++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6799999999999999998888899999999974344
No 64
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=34.41 E-value=49 Score=33.10 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=30.3
Q ss_pred HHHHhhCCCCeEEEecCChHHHHHHhcCCCEEEEec
Q 018955 53 IALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGL 88 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~glkV~lGv 88 (348)
+++|+..|+++||+.+ ++.=+.++.+.||+|.==+
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEe
Confidence 6799999999999998 7888888999999987333
No 65
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=34.03 E-value=57 Score=33.04 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=31.6
Q ss_pred HHHHhhCCCCeEEEecCChHHHHHHhcCCCEEEEec
Q 018955 53 IALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGL 88 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~glkV~lGv 88 (348)
.++|+..|+++||+.+.++.=+.++.+.||+|.=-+
T Consensus 339 aqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v 374 (402)
T PRK09311 339 AQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERV 374 (402)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEe
Confidence 679999999999999999888889999999997333
No 66
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=33.85 E-value=1e+02 Score=25.20 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=28.0
Q ss_pred HHHHHHHhhCCCCeEEEe--cCC---hHHHHHHhcCCCEEEE
Q 018955 50 RDVIALYNQNNIRRMRLY--DPN---REALEALRGSNIEVML 86 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY--~~d---~~vl~A~~~~glkV~l 86 (348)
+.+.+.++.+|++.|+++ +.. ..+|+++...|++|.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 345567777899999998 333 5799999999988653
No 67
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=33.81 E-value=2.2e+02 Score=26.33 Aligned_cols=70 Identities=7% Similarity=0.068 Sum_probs=47.5
Q ss_pred CCHHHHHHHHhhCCCCeEEEecCC--------hHHHHHHhc-CCCEEEEecCCCchhhhhhcHHHHHHHHHhhccccCCC
Q 018955 47 PSKRDVIALYNQNNIRRMRLYDPN--------REALEALRG-SNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRNFANN 117 (348)
Q Consensus 47 ~s~~~v~~ll~~~~~~~VRlY~~d--------~~vl~A~~~-~glkV~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~ 117 (348)
.+|-+.++.+++.|++.+=+.|.| ..+++.+.+ .-++|++|=-..+. +.++.++..
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGIrs~-------e~~~~~l~~-------- 94 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGIRDI-------EKAKRLLSL-------- 94 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCcCCH-------HHHHHHHHC--------
Confidence 378889998888999999999876 257777665 44588887554333 334444431
Q ss_pred ceEEEEEecccccCC
Q 018955 118 VKFKYIAVGNEAKPG 132 (348)
Q Consensus 118 ~~I~~I~VGNE~l~~ 132 (348)
.+..|+||++.+.+
T Consensus 95 -Ga~kvvigt~a~~~ 108 (232)
T PRK13586 95 -DVNALVFSTIVFTN 108 (232)
T ss_pred -CCCEEEECchhhCC
Confidence 24457899999864
No 68
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=33.73 E-value=57 Score=33.59 Aligned_cols=37 Identities=24% Similarity=0.419 Sum_probs=32.1
Q ss_pred HHHHhhCCCCeEEEecCChHHHHHHhcCCCEEEEecC
Q 018955 53 IALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGLP 89 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~glkV~lGv~ 89 (348)
.++|+..|+++||+.+.++.=+.++.+.||+|.==++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 6799999999999999999888899999999973333
No 69
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=33.73 E-value=56 Score=34.45 Aligned_cols=37 Identities=30% Similarity=0.499 Sum_probs=32.8
Q ss_pred HHHHhhCCCCeEEEecCChHHHHHHhcCCCEEEEecC
Q 018955 53 IALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGLP 89 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~glkV~lGv~ 89 (348)
+++|+..|+++||+.+.++.=+.++.+.||+|.==++
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6799999999999999999989999999999874444
No 70
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=32.73 E-value=2.3e+02 Score=26.26 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=47.9
Q ss_pred CCHHHHHHHHhh-CCCCeEEEecCC---------hHHHHHHh-cCCCEEEEecCCCchhhhhhcHHHHHHHHHhhccccC
Q 018955 47 PSKRDVIALYNQ-NNIRRMRLYDPN---------REALEALR-GSNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRNFA 115 (348)
Q Consensus 47 ~s~~~v~~ll~~-~~~~~VRlY~~d---------~~vl~A~~-~~glkV~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~ 115 (348)
.+|.+.++.+.+ .|++.+=+.|.| ..+++.+. ..+++|.+|=.....+ .++.++.
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e-------~v~~~l~------- 96 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRTKS-------QIMDYFA------- 96 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcCCHH-------HHHHHHH-------
Confidence 477788887777 689999999876 24776654 4689999987764443 3333332
Q ss_pred CCceEEEEEecccccCC
Q 018955 116 NNVKFKYIAVGNEAKPG 132 (348)
Q Consensus 116 ~~~~I~~I~VGNE~l~~ 132 (348)
.-+..|+||+|.+.+
T Consensus 97 --~Ga~kvvigt~a~~~ 111 (234)
T PRK13587 97 --AGINYCIVGTKGIQD 111 (234)
T ss_pred --CCCCEEEECchHhcC
Confidence 124457899999864
No 71
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=32.13 E-value=3.7e+02 Score=24.54 Aligned_cols=70 Identities=13% Similarity=0.243 Sum_probs=48.6
Q ss_pred CCCCHHHHHHHHhhCCCCeEEEecCC----hHHHHHHhc--CCCEEEEecCCCchhhhhhcHHHHHHHHHhhccccCCCc
Q 018955 45 NLPSKRDVIALYNQNNIRRMRLYDPN----REALEALRG--SNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRNFANNV 118 (348)
Q Consensus 45 ~~~s~~~v~~ll~~~~~~~VRlY~~d----~~vl~A~~~--~glkV~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~ 118 (348)
.+.||+|+.+-++ .|.+.||+|=++ +.-+++++. .++++|- .+.+. .+.+.+|++ .
T Consensus 107 G~~TptEi~~A~~-~Ga~~vKlFPA~~~GG~~yikal~~plp~i~~~p---tGGV~-----~~N~~~~l~---------a 168 (204)
T TIGR01182 107 GVATPSEIMLALE-LGITALKLFPAEVSGGVKMLKALAGPFPQVRFCP---TGGIN-----LANVRDYLA---------A 168 (204)
T ss_pred CCCCHHHHHHHHH-CCCCEEEECCchhcCCHHHHHHHhccCCCCcEEe---cCCCC-----HHHHHHHHh---------C
Confidence 3578999988877 679999999655 678888886 5677773 23332 245566765 2
Q ss_pred eEEEEEecccccCC
Q 018955 119 KFKYIAVGNEAKPG 132 (348)
Q Consensus 119 ~I~~I~VGNE~l~~ 132 (348)
....+.+|+.....
T Consensus 169 Ga~~vg~Gs~L~~~ 182 (204)
T TIGR01182 169 PNVACGGGSWLVPK 182 (204)
T ss_pred CCEEEEEChhhcCc
Confidence 34578888877653
No 72
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=31.62 E-value=1e+02 Score=25.95 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=36.3
Q ss_pred HHHHHHHhhCCCCeEEEecCChHHHHHHhcCCCEEEEecC
Q 018955 50 RDVIALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGLP 89 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY~~d~~vl~A~~~~glkV~lGv~ 89 (348)
..+.++++.+|++.|=+...-+..+.+|++.||+|+.+..
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 3578899999999998888889999999999999999988
No 73
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=31.30 E-value=2.6e+02 Score=25.73 Aligned_cols=69 Identities=22% Similarity=0.333 Sum_probs=47.6
Q ss_pred CHHHHHHHHhhCCCCeEEEecCC--------hHHHHHHh-cCCCEEEEecCCCchhhhhhcHHHHHHHHHhhccccCCCc
Q 018955 48 SKRDVIALYNQNNIRRMRLYDPN--------REALEALR-GSNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRNFANNV 118 (348)
Q Consensus 48 s~~~v~~ll~~~~~~~VRlY~~d--------~~vl~A~~-~~glkV~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~ 118 (348)
+|.+.++.+++.|++.+=+.|.| ..+++.+. ..+++|++|-.....+ .++.++. .
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGir~~e-------dv~~~l~---------~ 99 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIRSLE-------NAQEWLK---------R 99 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCcCCHH-------HHHHHHH---------c
Confidence 68889999998899999998876 24666654 4689999987764433 2333332 1
Q ss_pred eEEEEEecccccCC
Q 018955 119 KFKYIAVGNEAKPG 132 (348)
Q Consensus 119 ~I~~I~VGNE~l~~ 132 (348)
-...|++|+|.+.+
T Consensus 100 Ga~~viigt~~~~~ 113 (233)
T cd04723 100 GASRVIVGTETLPS 113 (233)
T ss_pred CCCeEEEcceeccc
Confidence 23457899999865
No 74
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=31.11 E-value=1.2e+02 Score=25.68 Aligned_cols=43 Identities=12% Similarity=0.222 Sum_probs=30.9
Q ss_pred HHHHHHHHhhCCCCeEEEecC---------------------C--hHHHHHHhcCCCEEEEecCCC
Q 018955 49 KRDVIALYNQNNIRRMRLYDP---------------------N--REALEALRGSNIEVMLGLPNN 91 (348)
Q Consensus 49 ~~~v~~ll~~~~~~~VRlY~~---------------------d--~~vl~A~~~~glkV~lGv~~~ 91 (348)
++++++.++..++++|-+|.- | ..+++|+.+.||+|++=+-..
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 566777777777777777532 1 367889999999998877654
No 75
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=30.19 E-value=2.2e+02 Score=30.52 Aligned_cols=38 Identities=16% Similarity=0.287 Sum_probs=27.1
Q ss_pred HHHHhhCCCCeEEEecCC------hHHHHHHhcCCCEEEEecCC
Q 018955 53 IALYNQNNIRRMRLYDPN------REALEALRGSNIEVMLGLPN 90 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d------~~vl~A~~~~glkV~lGv~~ 90 (348)
++..+.+|++.+|+|++- ...++++++.|..+...+-.
T Consensus 102 v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~y 145 (596)
T PRK14042 102 VKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICY 145 (596)
T ss_pred HHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEe
Confidence 345567899999999873 23566677899877766443
No 76
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=30.18 E-value=2.9e+02 Score=26.36 Aligned_cols=74 Identities=9% Similarity=0.184 Sum_probs=41.4
Q ss_pred cCCCEEEEecC--CC---chhhhhhcHHHHHHHHHhhccccCCCceEEEEEecccccCCCcchHHHHHHHHHHHHHHHHc
Q 018955 79 GSNIEVMLGLP--NN---DLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINAA 153 (348)
Q Consensus 79 ~~glkV~lGv~--~~---~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~Ll~~i~~v~~~L~~~ 153 (348)
+.++||++.|. .. ....+++++....+.++ ++..+.....+.+|-+==|-....+....++..|+++|++|...
T Consensus 64 ~~~lkvlisiGG~~~~s~~fs~~~~~~~~R~~fi~-siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~ 142 (299)
T cd02879 64 NPSVKTLLSIGGGGSDSSAFAAMASDPTARKAFIN-SSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDE 142 (299)
T ss_pred CCCCeEEEEEeCCCCCCchhhHHhCCHHHHHHHHH-HHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 46799888774 32 23445555554444333 33333222235566554443222234667889999999999754
No 77
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=30.06 E-value=1.2e+02 Score=28.01 Aligned_cols=71 Identities=14% Similarity=0.265 Sum_probs=47.7
Q ss_pred CCHHHHHHHHhhCCCCeEEEecCC---------hHHHHHHh-cCCCEEEEecCCCchhhhhhcHHHHHHHHHhhccccCC
Q 018955 47 PSKRDVIALYNQNNIRRMRLYDPN---------REALEALR-GSNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRNFAN 116 (348)
Q Consensus 47 ~s~~~v~~ll~~~~~~~VRlY~~d---------~~vl~A~~-~~glkV~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~ 116 (348)
.+|-++++.+...+++.+=+-|.| ..++..+. ..+++|++|-...+. +.++.|+..
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~~~i~vgGGIrs~-------ed~~~ll~~------- 94 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKETGIPIQVGGGIRSI-------EDAERLLDA------- 94 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSSSEEEEESSE-SH-------HHHHHHHHT-------
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcCCccEEEeCccCcH-------HHHHHHHHh-------
Confidence 468889998888999999888765 13555544 578999999886443 334444431
Q ss_pred CceEEEEEecccccCCC
Q 018955 117 NVKFKYIAVGNEAKPGD 133 (348)
Q Consensus 117 ~~~I~~I~VGNE~l~~~ 133 (348)
-+..|++|.|.+.+.
T Consensus 95 --Ga~~Vvigt~~~~~~ 109 (229)
T PF00977_consen 95 --GADRVVIGTEALEDP 109 (229)
T ss_dssp --T-SEEEESHHHHHCC
T ss_pred --CCCEEEeChHHhhch
Confidence 244789999988653
No 78
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.70 E-value=4.3e+02 Score=27.14 Aligned_cols=62 Identities=19% Similarity=0.271 Sum_probs=38.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhHHHHHHhhcCCcccccccccc
Q 018955 132 GDNFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYF 211 (348)
Q Consensus 132 ~~~~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~f~~d~~~~~~~~l~fL~~~~d~~~vN~yPff 211 (348)
|+-+.++.+.-++.+|+... ++-++|.. +. +|| |+=. ......++ |.+..-|=.+|+++|=
T Consensus 275 R~yt~e~~~~~i~k~R~~~P------d~~i~tDi----IV-GFP---gETe----edFe~tl~-lv~e~~fd~~~~F~YS 335 (437)
T COG0621 275 RGYTVEEYLEIIEKLRAARP------DIAISTDI----IV-GFP---GETE----EDFEETLD-LVEEVRFDRLHVFKYS 335 (437)
T ss_pred CCcCHHHHHHHHHHHHHhCC------CceEeccE----EE-ECC---CCCH----HHHHHHHH-HHHHhCCCEEeeeecC
Confidence 34467888888888888754 35566543 32 355 2111 23344555 4467788899999984
Q ss_pred c
Q 018955 212 A 212 (348)
Q Consensus 212 ~ 212 (348)
.
T Consensus 336 p 336 (437)
T COG0621 336 P 336 (437)
T ss_pred C
Confidence 3
No 79
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=29.57 E-value=2.7e+02 Score=25.94 Aligned_cols=70 Identities=11% Similarity=0.106 Sum_probs=48.2
Q ss_pred CCHHHHHHHHhhCCCCeEEEecCC---------hHHHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHhhccccCCC
Q 018955 47 PSKRDVIALYNQNNIRRMRLYDPN---------REALEALRGSNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRNFANN 117 (348)
Q Consensus 47 ~s~~~v~~ll~~~~~~~VRlY~~d---------~~vl~A~~~~glkV~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~ 117 (348)
.+|-++++.+++.|++.+=+.|.| ..+++.+++.-++|++|=...+. +.++.|+..
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~~~v~vGGGIrs~-------e~~~~~l~~-------- 94 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFAEHIQIGGGIRSL-------DYAEKLRKL-------- 94 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhcCcEEEecCCCCH-------HHHHHHHHC--------
Confidence 478889999988999999999876 25777776533678887555333 344444431
Q ss_pred ceEEEEEecccccCC
Q 018955 118 VKFKYIAVGNEAKPG 132 (348)
Q Consensus 118 ~~I~~I~VGNE~l~~ 132 (348)
.+..|++|++.+.+
T Consensus 95 -Ga~rvvigT~a~~~ 108 (241)
T PRK14114 95 -GYRRQIVSSKVLED 108 (241)
T ss_pred -CCCEEEECchhhCC
Confidence 23457899999864
No 80
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=29.35 E-value=1.3e+02 Score=31.49 Aligned_cols=81 Identities=16% Similarity=0.324 Sum_probs=52.1
Q ss_pred hCCCCccEEEeeeccCCCCCC--------CCCCCHHHHHHHHHHHHHHHH-hcCCCCCCCCccEEEEEeecC-CCCCCCC
Q 018955 258 TGGGSLGIVISESGWPTAGGD--------GALTNVDNARTYNNNLIQHVK-RGSPKRPGRPIETYIFAMFDE-NGKTGPE 327 (348)
Q Consensus 258 ~g~~~~~v~I~ETGWPS~G~~--------~~vas~~na~~y~~~~~~~~~-~gtp~~~~~~~~~f~F~~fDe-~wK~~~~ 327 (348)
-.|+|.+|+|+|-|-+...+. ....=.+..+.|++.+.+.++ .|+= -..+|..++-|- +|.. +
T Consensus 403 ~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvn-----v~GYf~WSLmDnfEw~~--G 475 (524)
T KOG0626|consen 403 DKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGVN-----VKGYFVWSLLDNFEWLD--G 475 (524)
T ss_pred hhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCCc-----eeeEEEeEcccchhhhc--C
Confidence 347899999999999986531 012334455666666666664 3321 235888887773 4554 3
Q ss_pred CCCceeeecC------CCCeeeec
Q 018955 328 IERHWGLFAP------TRQPRYQI 345 (348)
Q Consensus 328 ~E~~wGl~~~------d~~~ky~l 345 (348)
..-.|||++- .|.||-+.
T Consensus 476 y~~RFGlyyVDf~d~l~R~pK~Sa 499 (524)
T KOG0626|consen 476 YKVRFGLYYVDFKDPLKRYPKLSA 499 (524)
T ss_pred cccccccEEEeCCCCCcCCchhHH
Confidence 6678999994 56666543
No 81
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=29.13 E-value=2.6e+02 Score=25.82 Aligned_cols=69 Identities=17% Similarity=0.189 Sum_probs=48.2
Q ss_pred CHHHHHHHHhhCCCCeEEEecCC--------hHHHHHHh-cCCCEEEEecCCCchhhhhhcHHHHHHHHHhhccccCCCc
Q 018955 48 SKRDVIALYNQNNIRRMRLYDPN--------REALEALR-GSNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRNFANNV 118 (348)
Q Consensus 48 s~~~v~~ll~~~~~~~VRlY~~d--------~~vl~A~~-~~glkV~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~ 118 (348)
+|.++++.+.+.|++.+=+.|.| ..+++.+. ..+++|++|=...+. +.++.++..
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~~~~pv~vgGGirs~-------edv~~~l~~--------- 96 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGKLDVKVELSGGIRDD-------ESLEAALAT--------- 96 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHHcCCCEEEcCCCCCH-------HHHHHHHHC---------
Confidence 78889998988999999999886 24676664 468999998665443 333333331
Q ss_pred eEEEEEecccccCC
Q 018955 119 KFKYIAVGNEAKPG 132 (348)
Q Consensus 119 ~I~~I~VGNE~l~~ 132 (348)
....+.+|.+.+.+
T Consensus 97 Ga~kvviGs~~l~~ 110 (241)
T PRK14024 97 GCARVNIGTAALEN 110 (241)
T ss_pred CCCEEEECchHhCC
Confidence 23357889998864
No 82
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=28.53 E-value=5.5e+02 Score=24.89 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=65.3
Q ss_pred HHHHHHHhhCCCCeEEEecC-----------C-------hHHHHHHhcCCCEEEEe--cCCC------chhhhh------
Q 018955 50 RDVIALYNQNNIRRMRLYDP-----------N-------REALEALRGSNIEVMLG--LPNN------DLRRIA------ 97 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY~~-----------d-------~~vl~A~~~~glkV~lG--v~~~------~~~~~a------ 97 (348)
.++.+.+|+.|++.|-+|-. | ...|+.+++.||.|+|= -|.. .++..-
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~~~~ 106 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRKPDI 106 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGSTTS
T ss_pred HHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhccccc
Confidence 56788899999999999943 1 25778888999998763 2221 122110
Q ss_pred -------hcHHHHHHHHHhh---ccccC--CCceEEEEEecccccCCCcchHHHHHHHHHHHHHHHHcCCCCceEEeee
Q 018955 98 -------SNQAEANTWVQNN---VRNFA--NNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINAAGLGNQIKVSTA 164 (348)
Q Consensus 98 -------~~~~~a~~wv~~~---v~~~~--~~~~I~~I~VGNE~l~~~~~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~ 164 (348)
.-.+++..|.++- +.++. .+..|..+-|-||.-.. ..-..+|+.+++..++.|... +...|.
T Consensus 107 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~~----~~~~~Y~~~l~~~~~~~g~~~-~~~~t~ 180 (319)
T PF01301_consen 107 RLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGSY----GTDRAYMEALKDAYRDWGIDP-VLLYTT 180 (319)
T ss_dssp -SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGCT----SS-HHHHHHHHHHHHHTT-SS-SBEEEE
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCCC----cccHhHHHHHHHHHHHhhCcc-ceeecc
Confidence 1123556665432 33332 23679999999997632 234678889999999998764 333333
No 83
>PF14903 WG_beta_rep: WG containing repeat
Probab=27.79 E-value=46 Score=20.52 Aligned_cols=16 Identities=13% Similarity=0.412 Sum_probs=13.3
Q ss_pred eeeecCCCCeeeeccc
Q 018955 332 WGLFAPTRQPRYQINF 347 (348)
Q Consensus 332 wGl~~~d~~~ky~l~~ 347 (348)
||+++.+|+...+..+
T Consensus 1 ~G~id~~G~~vi~~~y 16 (35)
T PF14903_consen 1 WGYIDKNGKIVIPPKY 16 (35)
T ss_pred CEEEeCCCCEEEEccc
Confidence 8999999998877654
No 84
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=27.66 E-value=1.4e+02 Score=24.80 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=27.7
Q ss_pred HHHHHHHhhCCCCeEEEe--c--------CC---hHHHHHHhcCCCEEE
Q 018955 50 RDVIALYNQNNIRRMRLY--D--------PN---REALEALRGSNIEVM 85 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY--~--------~d---~~vl~A~~~~glkV~ 85 (348)
+++.+..+.+|++.|+++ + +. ...|++++..||+|.
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 445667778899988887 4 32 579999999999975
No 85
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=27.62 E-value=1.1e+02 Score=29.54 Aligned_cols=117 Identities=12% Similarity=0.231 Sum_probs=61.2
Q ss_pred CCCEEEEecCC--C--chhhhhhcHHHHHHHHHhhccccCCCceEEEEEecccccCC---------CcchHHHHHHHHHH
Q 018955 80 SNIEVMLGLPN--N--DLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPG---------DNFAQYLVPAMRNI 146 (348)
Q Consensus 80 ~glkV~lGv~~--~--~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~---------~~~~~~Ll~~i~~v 146 (348)
.++||++.|.. + ....++++.+..++.+ +++..+.....+.+|-+==|-... .+....++..|+++
T Consensus 83 p~lkvl~siGG~~~s~~f~~~~~~~~~r~~Fi-~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~ll~~L 161 (322)
T cd06548 83 PHLKILLSIGGWTWSGGFSDAAATEASRAKFA-DSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLLLKEL 161 (322)
T ss_pred CCCEEEEEEeCCCCCCCchhHhCCHHHHHHHH-HHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHHHHHH
Confidence 56887776653 2 2233444444333332 333333223356666664442211 12467789999999
Q ss_pred HHHHHHcCC--CCceEEeeeeeccccccccCCCCcccccCccchhhHHHHHHhhcCCcccccccccccc
Q 018955 147 QNAINAAGL--GNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFAI 213 (348)
Q Consensus 147 ~~~L~~~gl--~~~I~VsT~~~~~~~~~s~pPs~~~f~~d~~~~~~~~l~fL~~~~d~~~vN~yPff~~ 213 (348)
|++|.+.|. +.+..+|.+.. |+...+ +.. . +..|++.+|++.+-.|=|...
T Consensus 162 r~~l~~~~~~~~~~~~Ls~av~---------~~~~~~-~~~-~-----~~~l~~~vD~vnlMtYD~~g~ 214 (322)
T cd06548 162 REALDALGAETGRKYLLTIAAP---------AGPDKL-DKL-E-----VAEIAKYLDFINLMTYDFHGA 214 (322)
T ss_pred HHHHHHhhhccCCceEEEEEcc---------CCHHHH-hcC-C-----HHHHhhcCCEEEEEEeeccCC
Confidence 999988641 11133444321 111111 000 0 233677889999988887654
No 86
>PLN00196 alpha-amylase; Provisional
Probab=27.36 E-value=2.7e+02 Score=28.39 Aligned_cols=30 Identities=7% Similarity=0.014 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHH-HcCCCCceEEeeeee
Q 018955 136 AQYLVPAMRNIQNAIN-AAGLGNQIKVSTAIE 166 (348)
Q Consensus 136 ~~~Ll~~i~~v~~~L~-~~gl~~~I~VsT~~~ 166 (348)
-+++..+|.++..-++ ..|+++ +++-++..
T Consensus 177 np~V~~~l~~~~~wl~~~~GiDG-~RlD~ak~ 207 (428)
T PLN00196 177 NKRVQRELIGWLLWLKSDIGFDA-WRLDFAKG 207 (428)
T ss_pred CHHHHHHHHHHHHHHhhCCCCCE-EEeehhhh
Confidence 4566677777766775 578886 88877654
No 87
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.16 E-value=5.8e+02 Score=26.65 Aligned_cols=135 Identities=14% Similarity=0.194 Sum_probs=67.0
Q ss_pred CCHHHHHH---HHhhCCCCeEEEecCC---------------hHHHHHHhcCCCE-EEEecCCCchhhhhhcHHHHHHHH
Q 018955 47 PSKRDVIA---LYNQNNIRRMRLYDPN---------------REALEALRGSNIE-VMLGLPNNDLRRIASNQAEANTWV 107 (348)
Q Consensus 47 ~s~~~v~~---ll~~~~~~~VRlY~~d---------------~~vl~A~~~~glk-V~lGv~~~~~~~~a~~~~~a~~wv 107 (348)
-++++|++ .+...|++.|.+.+.+ ..+++.+.+.+++ +-++..+ ...+. .+.+ +-+
T Consensus 241 r~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~~i~~ir~~s~~--P~~i~--deli-~~m 315 (509)
T PRK14327 241 RRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKIDIPRVRFTTSH--PRDFD--DHLI-EVL 315 (509)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhCCCceEEEeecC--cccCC--HHHH-HHH
Confidence 45677764 3445688888886542 2456666655542 3232211 11111 1111 112
Q ss_pred HhhccccCCCceEEEEEecccccC--------CCcchHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCc
Q 018955 108 QNNVRNFANNVKFKYIAVGNEAKP--------GDNFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRG 179 (348)
Q Consensus 108 ~~~v~~~~~~~~I~~I~VGNE~l~--------~~~~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~ 179 (348)
+ .. +-.+..+.+|=|-.. |+.+.++.+..++.+|+.+ . ++.++|.. +. +||
T Consensus 316 ~----~~--g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~-----p-~i~i~tdi----Iv-GfP---- 374 (509)
T PRK14327 316 A----KG--GNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAI-----P-NVALTTDI----IV-GFP---- 374 (509)
T ss_pred H----hc--CCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC-----C-CcEEeeeE----EE-eCC----
Confidence 1 11 122456666655433 2236788888888888852 2 36666543 22 344
Q ss_pred ccccCccchhhHHHHHHhhcCCcccccccccc
Q 018955 180 SFKQDYRPILDPLIRFLNENRSPLLLNLYPYF 211 (348)
Q Consensus 180 ~f~~d~~~~~~~~l~fL~~~~d~~~vN~yPff 211 (348)
.+-.+.+...++|+.+ ..+-.+++|+|-
T Consensus 375 ---gET~edf~~Tl~~v~~-l~~d~~~~f~ys 402 (509)
T PRK14327 375 ---NETDEQFEETLSLYRE-VGFDHAYTFIYS 402 (509)
T ss_pred ---CCCHHHHHHHHHHHHH-cCCCeEEEeeee
Confidence 1112345566776644 344456666653
No 88
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=26.78 E-value=4.4e+02 Score=24.88 Aligned_cols=92 Identities=12% Similarity=0.102 Sum_probs=49.7
Q ss_pred HHHHHHHhhCCCCeEEEecCC---h---HHHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHhhccccCCCceEEEE
Q 018955 50 RDVIALYNQNNIRRMRLYDPN---R---EALEALRGSNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRNFANNVKFKYI 123 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY~~d---~---~vl~A~~~~glkV~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I 123 (348)
.++++.....|++.||++..- . ..++.+++.|++|...+-..+.. ..+.+...+.+++. ... +.+ .|
T Consensus 94 ~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~--~~~~~~~~~~~~~~-~~~-Ga~---~i 166 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSP--VHTLEYYVKLAKEL-EDM-GAD---SI 166 (275)
T ss_pred HHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCC--CCCHHHHHHHHHHH-HHc-CCC---EE
Confidence 344556666789999999663 2 34556678899988765321111 01223333323222 222 222 33
Q ss_pred EecccccCCCcchHHHHHHHHHHHHHH
Q 018955 124 AVGNEAKPGDNFAQYLVPAMRNIQNAI 150 (348)
Q Consensus 124 ~VGNE~l~~~~~~~~Ll~~i~~v~~~L 150 (348)
.+..-+ ..-+|.++...++.+|+.+
T Consensus 167 ~l~DT~--G~~~P~~v~~lv~~l~~~~ 191 (275)
T cd07937 167 CIKDMA--GLLTPYAAYELVKALKKEV 191 (275)
T ss_pred EEcCCC--CCCCHHHHHHHHHHHHHhC
Confidence 333111 1126888999999998764
No 89
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=26.59 E-value=1.3e+02 Score=24.59 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=27.4
Q ss_pred HHHHHHhhCCCCeEEEe--cCC---hHHHHHHhcCCCEEEE
Q 018955 51 DVIALYNQNNIRRMRLY--DPN---REALEALRGSNIEVML 86 (348)
Q Consensus 51 ~v~~ll~~~~~~~VRlY--~~d---~~vl~A~~~~glkV~l 86 (348)
.+.+.++..|++.|+++ +.. ..+|+++...|++|..
T Consensus 51 ~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 51 KIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 34566777899999998 333 4799999999998654
No 90
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=26.58 E-value=1.2e+02 Score=27.68 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=34.7
Q ss_pred HHHHhhCCCCeEEEecCChHHHHHHhcCCCEEEEecCCC
Q 018955 53 IALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGLPNN 91 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~glkV~lGv~~~ 91 (348)
+++|+..|+++||+-+.++.=..++.+.||+|.=-+++.
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 578999999999999999988899999999998888764
No 91
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=26.39 E-value=1.5e+02 Score=30.27 Aligned_cols=95 Identities=17% Similarity=0.273 Sum_probs=52.6
Q ss_pred HHHHHHHhhCCCCeEEEe--cCCh-------------H---HHHHHhcCCC-----EEEEecCCCchhhhhhcHHHHHHH
Q 018955 50 RDVIALYNQNNIRRMRLY--DPNR-------------E---ALEALRGSNI-----EVMLGLPNNDLRRIASNQAEANTW 106 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY--~~d~-------------~---vl~A~~~~gl-----kV~lGv~~~~~~~~a~~~~~a~~w 106 (348)
.+.+++++..|+++|-+= +.++ . .++.+++.|+ .+|.|++.+....+....+.+.+
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~- 230 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIA- 230 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHh-
Confidence 466777777787765432 2221 2 3333444454 47889998776666544443322
Q ss_pred HHhhccccCCCceEEEEE-------------ecccccCCCcchHHHHHHHHHHHHHHHHcCCC
Q 018955 107 VQNNVRNFANNVKFKYIA-------------VGNEAKPGDNFAQYLVPAMRNIQNAINAAGLG 156 (348)
Q Consensus 107 v~~~v~~~~~~~~I~~I~-------------VGNE~l~~~~~~~~Ll~~i~~v~~~L~~~gl~ 156 (348)
. +.+.|..-. +|.+.+. ...+.+...+...+.|.++|+.
T Consensus 231 -------l-~p~~i~~y~l~~~p~~~~~~~~~~~~~lp---~~~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 231 -------L-SPDRIAVFGYAHVPSRRKNQRLIDEAALP---DAEERLRQARAVADRLLAAGYV 282 (453)
T ss_pred -------c-CCCEEEEeccccccchhhHHhcCCccCCc---CHHHHHHHHHHHHHHHHHCCCE
Confidence 1 112222211 1222221 3566778888899999999984
No 92
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=25.95 E-value=33 Score=31.83 Aligned_cols=62 Identities=21% Similarity=0.363 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhCCCCccEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCC--CCccEEEEEeecCCCCC
Q 018955 247 ILDAVYAALEKTGGGSLGIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKRGSPKRPG--RPIETYIFAMFDENGKT 324 (348)
Q Consensus 247 ~~da~~~a~~~~g~~~~~v~I~ETGWPS~G~~~~vas~~na~~y~~~~~~~~~~gtp~~~~--~~~~~f~F~~fDe~wK~ 324 (348)
+.|.+..+|+.+|.|.--+=-+...| .|+.. ..+|.+.|.|..|| +.+.-.+|.-+|++|..
T Consensus 36 ~adila~aL~~~gvp~EVlGFtT~aw--~gg~~--------------~~~w~~~G~p~~pgrln~l~h~vyk~a~~~wrr 99 (219)
T PF11775_consen 36 CADILARALERCGVPVEVLGFTTRAW--KGGRS--------------REAWLAAGRPRYPGRLNDLRHIVYKDADTPWRR 99 (219)
T ss_pred HHHHHHHHHHhCCCCeEEEeeecCCc--CCcch--------------HHHHHhcCCCCCChHHHHHHHHHHHhcCChhhh
Confidence 57888888888775532222344445 23311 23455667777776 24466678888888864
No 93
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=24.73 E-value=1.9e+02 Score=24.28 Aligned_cols=47 Identities=13% Similarity=0.243 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHhhCCCCeEEEecCC-----hHHHHHHhcCCCEEEEecCC
Q 018955 44 NNLPSKRDVIALYNQNNIRRMRLYDPN-----REALEALRGSNIEVMLGLPN 90 (348)
Q Consensus 44 ~~~~s~~~v~~ll~~~~~~~VRlY~~d-----~~vl~A~~~~glkV~lGv~~ 90 (348)
+...+++++++..++.|++.|=+=+-+ +.-.+.++..||++++|+-.
T Consensus 13 dg~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 13 DGKDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp TSSSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 345588999999999999988877654 35556677799999999986
No 94
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=24.72 E-value=3.2e+02 Score=29.76 Aligned_cols=117 Identities=18% Similarity=0.142 Sum_probs=65.8
Q ss_pred eeeEEecCCCCCCCC--HHHHHHHHhhCCCCeEEE-ecC------C---------hHH-HHHHhcCCCEEEEec-CCCch
Q 018955 34 QIGVCYGMLGNNLPS--KRDVIALYNQNNIRRMRL-YDP------N---------REA-LEALRGSNIEVMLGL-PNNDL 93 (348)
Q Consensus 34 ~~Gi~Y~~~~~~~~s--~~~v~~ll~~~~~~~VRl-Y~~------d---------~~v-l~A~~~~glkV~lGv-~~~~~ 93 (348)
.+|-||-|.+ .|. -++..+++|..|++.||+ |=+ + ..+ ++-+.+.|+.|+|.- +....
T Consensus 17 l~gG~y~p~~--~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~~~D~~~l~~a~~~Gl~vil~t~P~g~~ 94 (673)
T COG1874 17 LYGGDYYPER--WPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFTWLDEIFLERAYKAGLYVILRTGPTGAP 94 (673)
T ss_pred EeccccChHH--CCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcccchHHHHHHHHhcCceEEEecCCCCCC
Confidence 4577777776 554 255677889999999999 611 1 234 777889999999998 64444
Q ss_pred hh-hhhcHHHHHHHHHhhccccCCCceEEEEEecccccCCCc--chHHHHHHHHHHHHHHHHcCCCCceEEeeee
Q 018955 94 RR-IASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDN--FAQYLVPAMRNIQNAINAAGLGNQIKVSTAI 165 (348)
Q Consensus 94 ~~-~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~--~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~ 165 (348)
++ +++...+ |+..+ ...+...-++-|.++-.+ .-+.+-..+++++..|...| ..|-+-+
T Consensus 95 P~Wl~~~~Pe---iL~~~------~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~----~~v~~w~ 156 (673)
T COG1874 95 PAWLAKKYPE---ILAVD------ENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNG----PAVITWQ 156 (673)
T ss_pred chHHhcCChh---heEec------CCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccC----CceeEEE
Confidence 43 2222111 11111 123444444544443211 34445556667777763332 3555555
No 95
>PRK03941 NTPase; Reviewed
Probab=24.68 E-value=4.9e+02 Score=23.24 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=39.0
Q ss_pred CEEEEecCCCchhhhhhcHHHHHHHHHhhccccCCCceEEEEEecccccCCCcchHHHHHHHHHHHHHHHH
Q 018955 82 IEVMLGLPNNDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINA 152 (348)
Q Consensus 82 lkV~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~Ll~~i~~v~~~L~~ 152 (348)
|+|.+|--|.- . .++ +++....+.|...|.++.|-+.+=...-..+++..+++.+|.+++.
T Consensus 1 m~V~VGS~NPv--K----i~A----v~~af~~~~~~~~v~~v~v~SgV~~QP~geET~~GA~nRA~~A~~~ 61 (174)
T PRK03941 1 MKVAVGSTNPV--K----VEA----VENVFGKIFDDVEVVGVEVDSGVPDQPFGEETVKGAINRAKNAYSP 61 (174)
T ss_pred CEEEEeCCCHH--H----HHH----HHHHHHHhCCCcEEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 57777766521 1 122 3344444456666878887777643321378899999999999985
No 96
>CHL00041 rps11 ribosomal protein S11
Probab=24.63 E-value=1.8e+02 Score=24.07 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=26.6
Q ss_pred HHHHHHhhCCCCeEEEe--cCC---hHHHHHHhcCCCEEE
Q 018955 51 DVIALYNQNNIRRMRLY--DPN---REALEALRGSNIEVM 85 (348)
Q Consensus 51 ~v~~ll~~~~~~~VRlY--~~d---~~vl~A~~~~glkV~ 85 (348)
.+.+.++.+|++.|+++ +.. ..+|+++...|++|.
T Consensus 64 ~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 64 NAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 34566677899999888 332 578999999999865
No 97
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=24.54 E-value=6.6e+02 Score=24.67 Aligned_cols=58 Identities=14% Similarity=0.087 Sum_probs=38.4
Q ss_pred CCeeeEEecCCCCCCCCHHHHHHHHhhCCCCeEEEecCChHHHHHHhcCCCEEEEecCC
Q 018955 32 SAQIGVCYGMLGNNLPSKRDVIALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGLPN 90 (348)
Q Consensus 32 ~~~~Gi~Y~~~~~~~~s~~~v~~ll~~~~~~~VRlY~~d~~vl~A~~~~glkV~lGv~~ 90 (348)
...+|||.-.+.++ +..++.++++...+.+.|=+..-++...+.++..|++|+.-++.
T Consensus 55 dkPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s 112 (320)
T cd04743 55 DKPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS 112 (320)
T ss_pred CCCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC
Confidence 45678887554322 33455566666666777766554555578888999999988874
No 98
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=24.32 E-value=5.4e+02 Score=23.30 Aligned_cols=94 Identities=13% Similarity=0.240 Sum_probs=58.2
Q ss_pred CHHHHHHHHhhCCCCeEEEe--cCC--hHHHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHhhccccCC-CceEEE
Q 018955 48 SKRDVIALYNQNNIRRMRLY--DPN--REALEALRGSNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRNFAN-NVKFKY 122 (348)
Q Consensus 48 s~~~v~~ll~~~~~~~VRlY--~~d--~~vl~A~~~~glkV~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~-~~~I~~ 122 (348)
.|.+.++.++..|.+.|=+- +++ ..+++.+++.|+++-+.++.+..- +.+.++.+ -+.|..
T Consensus 68 ~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~--------------~~~~~~l~~vD~Vlv 133 (201)
T PF00834_consen 68 NPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPV--------------EELEPYLDQVDMVLV 133 (201)
T ss_dssp SGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-G--------------GGGTTTGCCSSEEEE
T ss_pred cHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCc--------------hHHHHHhhhcCEEEE
Confidence 45667777766677766443 222 368889999999998888764211 11223322 244544
Q ss_pred EEecccccCCCc-chHHHHHHHHHHHHHHHHcCCCC
Q 018955 123 IAVGNEAKPGDN-FAQYLVPAMRNIQNAINAAGLGN 157 (348)
Q Consensus 123 I~VGNE~l~~~~-~~~~Ll~~i~~v~~~L~~~gl~~ 157 (348)
.+| |+=+.++ .-+..++.|+.+|+.+...|++-
T Consensus 134 MsV--~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~ 167 (201)
T PF00834_consen 134 MSV--EPGFGGQKFIPEVLEKIRELRKLIPENGLDF 167 (201)
T ss_dssp ESS---TTTSSB--HGGHHHHHHHHHHHHHHHTCGS
T ss_pred EEe--cCCCCcccccHHHHHHHHHHHHHHHhcCCce
Confidence 444 4545555 68889999999999999988743
No 99
>PRK09989 hypothetical protein; Provisional
Probab=24.28 E-value=5.6e+02 Score=23.48 Aligned_cols=50 Identities=8% Similarity=0.072 Sum_probs=35.9
Q ss_pred eEEecCCCCCCCCHHHHHHHHhhCCCCeEEEec---CC-hHHHHHHhcCCCEEEE
Q 018955 36 GVCYGMLGNNLPSKRDVIALYNQNNIRRMRLYD---PN-REALEALRGSNIEVML 86 (348)
Q Consensus 36 Gi~Y~~~~~~~~s~~~v~~ll~~~~~~~VRlY~---~d-~~vl~A~~~~glkV~l 86 (348)
++|.+...... |..+.++.+++.|++.|-+.. -+ ..+.+.++++||++..
T Consensus 5 ~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 5 AANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred eeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 45555444333 577888999999999999843 33 4567778899999886
No 100
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=23.73 E-value=3.2e+02 Score=20.53 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=36.5
Q ss_pred CHHHHHHHHhhCCCCeEEEecCChHHHHHHhcCCCEEEEecCCCchh
Q 018955 48 SKRDVIALYNQNNIRRMRLYDPNREALEALRGSNIEVMLGLPNNDLR 94 (348)
Q Consensus 48 s~~~v~~ll~~~~~~~VRlY~~d~~vl~A~~~~glkV~lGv~~~~~~ 94 (348)
.....+++|...+++.|=.-..-+...+.+...||+|+.+ ...++.
T Consensus 41 ~~~~~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~-~~~~i~ 86 (94)
T PF02579_consen 41 GGDKIAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQG-AGGDIE 86 (94)
T ss_dssp HSTHHHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEES-TSSBHH
T ss_pred cchhHHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEc-CCCCHH
Confidence 3456778787788998877777899999999999999999 434443
No 101
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=23.57 E-value=3.1e+02 Score=29.33 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=26.3
Q ss_pred HHHHHHhhCCCCeEEEecCC------hHHHHHHhcCCCEEEEec
Q 018955 51 DVIALYNQNNIRRMRLYDPN------REALEALRGSNIEVMLGL 88 (348)
Q Consensus 51 ~v~~ll~~~~~~~VRlY~~d------~~vl~A~~~~glkV~lGv 88 (348)
.+++.....|++.||+|+.- ...++++++.|..+...+
T Consensus 101 ~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i 144 (593)
T PRK14040 101 RFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTL 144 (593)
T ss_pred HHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEE
Confidence 34556667899999999763 245666778898754433
No 102
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=23.42 E-value=3.7e+02 Score=22.75 Aligned_cols=53 Identities=21% Similarity=0.453 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhCCCCccEEEeeeccCCCCCC-------------C-------------CCCCHHHHHHHHHHHHHHHH
Q 018955 246 AILDAVYAALEKTGGGSLGIVISESGWPTAGGD-------------G-------------ALTNVDNARTYNNNLIQHVK 299 (348)
Q Consensus 246 a~~da~~~a~~~~g~~~~~v~I~ETGWPS~G~~-------------~-------------~vas~~na~~y~~~~~~~~~ 299 (348)
..++++..-++. .-++||+|++=-|||=.|.. | .-|...+...|...+.+|++
T Consensus 36 ~v~~ai~~~l~~-~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I~ 114 (127)
T PF06309_consen 36 VVVNAIKGHLAN-PNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWIR 114 (127)
T ss_pred HHHHHHHHHHcC-CCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHHHH
Confidence 345555555544 34899999999999977740 1 13556677788888887775
No 103
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=23.42 E-value=6.3e+02 Score=23.76 Aligned_cols=88 Identities=8% Similarity=0.092 Sum_probs=50.0
Q ss_pred HHHHHhhCCCCeEEEecCC------hHHHHHHhcCCCEEEEecCCCchhhhhhcHHHHHHHHHhhccccCCCceEEEEEe
Q 018955 52 VIALYNQNNIRRMRLYDPN------REALEALRGSNIEVMLGLPNNDLRRIASNQAEANTWVQNNVRNFANNVKFKYIAV 125 (348)
Q Consensus 52 v~~ll~~~~~~~VRlY~~d------~~vl~A~~~~glkV~lGv~~~~~~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~V 125 (348)
.++.....+++.||++... ...++.+++.|++|.+++..... .+.+...+.++.. ..+ +.+ .|.+
T Consensus 87 ~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~----~~~~~~~~~~~~~-~~~-g~~---~i~l 157 (266)
T cd07944 87 LLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISG----YSDEELLELLELV-NEI-KPD---VFYI 157 (266)
T ss_pred HHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecC----CCHHHHHHHHHHH-HhC-CCC---EEEE
Confidence 3444455789999999553 24555667789999988775321 2334444433332 222 222 3333
Q ss_pred cccccCCCcchHHHHHHHHHHHHHH
Q 018955 126 GNEAKPGDNFAQYLVPAMRNIQNAI 150 (348)
Q Consensus 126 GNE~l~~~~~~~~Ll~~i~~v~~~L 150 (348)
..-. ..-+|.++-..++.+|+.+
T Consensus 158 ~DT~--G~~~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 158 VDSF--GSMYPEDIKRIISLLRSNL 180 (266)
T ss_pred ecCC--CCCCHHHHHHHHHHHHHhc
Confidence 3111 0126888888888888764
No 104
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=23.10 E-value=1.9e+02 Score=24.73 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=28.3
Q ss_pred HHHHHHHhhCCCCeEEEe--c--------CC---hHHHHHHhcCCCEEEE
Q 018955 50 RDVIALYNQNNIRRMRLY--D--------PN---REALEALRGSNIEVML 86 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY--~--------~d---~~vl~A~~~~glkV~l 86 (348)
+++.+.++.+|++.|+++ + .. ..+|+++...||+|..
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~ 109 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 109 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEE
Confidence 445667778999999888 4 33 4799999999999653
No 105
>COG2113 ProX ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]
Probab=22.78 E-value=2e+02 Score=27.99 Aligned_cols=62 Identities=5% Similarity=-0.037 Sum_probs=40.8
Q ss_pred CCCeeeEEecCCCCCCCCHHHHHHHHhhCCCCeEEEecCC-hHHHHHHhcCCCEEEEecCCCch
Q 018955 31 TSAQIGVCYGMLGNNLPSKRDVIALYNQNNIRRMRLYDPN-REALEALRGSNIEVMLGLPNNDL 93 (348)
Q Consensus 31 ~~~~~Gi~Y~~~~~~~~s~~~v~~ll~~~~~~~VRlY~~d-~~vl~A~~~~glkV~lGv~~~~~ 93 (348)
....+-|.+-.+.+...+..-+..+|+..|.+. .+-..| .-..+++++.++.++++.|....
T Consensus 29 ~~~tV~~a~~~W~s~~~~t~v~~~iLk~~Gy~v-~~~~~~~~~~~~sla~gd~D~~~~~W~p~~ 91 (302)
T COG2113 29 AGKTVRIADVGWTSGTATTNVAKKILKGLGYTV-ELVTLDTAVMYQSLAKGDLDVFPEAWLPTT 91 (302)
T ss_pred cCCeeEEeecCccHHHHHHHHHHHHHHhCCCcc-eeeeccHHHHHHHHHcCCCccccceecCCC
Confidence 355666665555543333333445778888766 666666 45667888888999999997644
No 106
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=22.20 E-value=2.9e+02 Score=27.73 Aligned_cols=131 Identities=15% Similarity=0.264 Sum_probs=71.5
Q ss_pred chHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCCCCccc--ccCccchhhHHHHHHhhcCCccccccccccc
Q 018955 135 FAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPPSRGSF--KQDYRPILDPLIRFLNENRSPLLLNLYPYFA 212 (348)
Q Consensus 135 ~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~f--~~d~~~~~~~~l~fL~~~~d~~~vN~yPff~ 212 (348)
..+++...+++.|+. +||+.+-..-.-|...+ +.| .++.-+-.+.+++.|.+.+=-++++++|+..
T Consensus 41 ~~~~v~~~i~~~~~~--------~iP~d~~~iD~~~~~~~----~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~ 108 (441)
T PF01055_consen 41 NQDEVREVIDRYRSN--------GIPLDVIWIDDDYQDGY----GDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVS 108 (441)
T ss_dssp SHHHHHHHHHHHHHT--------T--EEEEEE-GGGSBTT----BTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEE
T ss_pred CHHHHHHHHHHHHHc--------CCCccceeccccccccc----cccccccccccchHHHHHhHhhCCcEEEEEeecccC
Confidence 466777777777763 58888765433333221 233 2222245688889999988899999999866
Q ss_pred ccCCCCCCccccccccCCceeccCCcchhhHHHHHHHHHHHHHHHhCC----CCccEEEeeeccCCCCC-CCCCCCHHHH
Q 018955 213 IAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGG----GSLGIVISESGWPTAGG-DGALTNVDNA 287 (348)
Q Consensus 213 ~~~~~~i~~~~a~f~~~~~~~~d~~~~y~n~~da~~da~~~a~~~~g~----~~~~v~I~ETGWPS~G~-~~~vas~~na 287 (348)
.... . | ..++.. ...|+ ++-...+++. ||-.+. .. -+-.++
T Consensus 109 ~~~~-----~-----------------~-~~~~~~--------~~~~~~v~~~~g~~~~~~~-w~g~~~~~D--ftnp~a 154 (441)
T PF01055_consen 109 NDSP-----D-----------------Y-ENYDEA--------KEKGYLVKNPDGSPYIGRV-WPGKGGFID--FTNPEA 154 (441)
T ss_dssp TTTT-----B-------------------HHHHHH--------HHTT-BEBCTTSSB-EEEE-TTEEEEEB---TTSHHH
T ss_pred CCCC-----c-----------------c-hhhhhH--------hhcCceeecccCCcccccc-cCCcccccC--CCChhH
Confidence 5321 1 1 122211 11221 2236677777 984433 34 344558
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCccEEEEEe
Q 018955 288 RTYNNNLIQHVKRGSPKRPGRPIETYIFAM 317 (348)
Q Consensus 288 ~~y~~~~~~~~~~gtp~~~~~~~~~f~F~~ 317 (348)
+.++++.++.+. .. .+++.+|...
T Consensus 155 ~~w~~~~~~~~~-----~~-~Gvdg~w~D~ 178 (441)
T PF01055_consen 155 RDWWKEQLKELL-----DD-YGVDGWWLDF 178 (441)
T ss_dssp HHHHHHHHHHHH-----TT-ST-SEEEEES
T ss_pred HHHHHHHHHHHH-----hc-cCCceEEeec
Confidence 888877766663 21 2788888875
No 107
>PRK07198 hypothetical protein; Validated
Probab=21.92 E-value=80 Score=31.99 Aligned_cols=37 Identities=32% Similarity=0.408 Sum_probs=32.4
Q ss_pred HHHHhhCCCCeE-EEecCChHHHHHHhcCCCEEEEecC
Q 018955 53 IALYNQNNIRRM-RLYDPNREALEALRGSNIEVMLGLP 89 (348)
Q Consensus 53 ~~ll~~~~~~~V-RlY~~d~~vl~A~~~~glkV~lGv~ 89 (348)
.++|+..|+++| |+.+..+.=+.++.+.||+|.==++
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 578999999999 9999998888899999999985554
No 108
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=21.89 E-value=1.6e+02 Score=31.78 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=52.4
Q ss_pred cCCCEEEEecCCCc-----hhhh-hhc----HHHHHHHHHhhccccCCCceEEEEEecccccCCCcchHHHHHHHHHHHH
Q 018955 79 GSNIEVMLGLPNND-----LRRI-ASN----QAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQN 148 (348)
Q Consensus 79 ~~glkV~lGv~~~~-----~~~~-a~~----~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~Ll~~i~~v~~ 148 (348)
+-+||+..--|..- -... ..+ .....+|+...-..| +-.|.+|-+=||--+ =..+|+.+|+
T Consensus 125 NP~ikl~~L~W~~PgW~~~g~~~~~~~~~~~a~Y~~~wl~ga~~~~--gl~idYvg~~NEr~~-------~~~~ik~lr~ 195 (669)
T PF02057_consen 125 NPNIKLYGLPWGFPGWVGNGWNWPYDNPQLTAYYVVSWLLGAKKTH--GLDIDYVGIWNERGF-------DVNYIKWLRK 195 (669)
T ss_dssp -TT-EEEEEES-B-GGGGTTSS-TTSSHHHHHHHHHHHHHHHHHHH-------EE-S-TTS----------HHHHHHHHH
T ss_pred CCCCeEEEeccCCCccccCCCCCcccchhhhhHHHHHHHHHHHHHh--CCCceEechhhccCC-------ChhHHHHHHH
Confidence 47899999888531 0000 001 123457876554444 346888877777633 2468999999
Q ss_pred HHHHcCCCCceEEeeeeeccccccccCCCCcccccCccchhhHHHHHHhhcCCcccccccc
Q 018955 149 AINAAGLGNQIKVSTAIETGALGESFPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYP 209 (348)
Q Consensus 149 ~L~~~gl~~~I~VsT~~~~~~~~~s~pPs~~~f~~d~~~~~~~~l~fL~~~~d~~~vN~yP 209 (348)
+|.+.|+.+ |||--+|.. |.. |-+ ..+.+ ..|.++.|.++.| ||
T Consensus 196 ~l~~~gy~~-vkiva~D~~--~~~--------~~~---~m~~D--~~l~~avdvig~H-Y~ 239 (669)
T PF02057_consen 196 ALNSNGYNK-VKIVAADNN--WES--------ISD---DMLSD--PELRNAVDVIGYH-YP 239 (669)
T ss_dssp HHHHTT-TT--EEEEEEE---STT--------HHH---HHHH---HHHHHH--EEEEE-S-
T ss_pred HHhhccccc-eEEEEeCCC--ccc--------hhh---hhhcC--HHHHhcccEeccc-cC
Confidence 999999985 999988864 221 111 11111 2377888999988 66
No 109
>PF14465 NFRKB_winged: NFRKB Winged Helix-like; PDB: 3U21_B.
Probab=21.44 E-value=74 Score=25.89 Aligned_cols=35 Identities=20% Similarity=0.465 Sum_probs=23.2
Q ss_pred ccccCccchhhHHHHHHhhcCCccccccccccccc
Q 018955 180 SFKQDYRPILDPLIRFLNENRSPLLLNLYPYFAIA 214 (348)
Q Consensus 180 ~f~~d~~~~~~~~l~fL~~~~d~~~vN~yPff~~~ 214 (348)
.+.+|+...+.+.|+||+......--+.+||-++.
T Consensus 40 s~~pdWs~Lv~sAL~fLaG~~~~~p~~f~P~Ve~k 74 (100)
T PF14465_consen 40 SLQPDWSELVQSALQFLAGESGDLPSEFVPYVEYK 74 (100)
T ss_dssp GG-S-CGGGHHHHHHHHTT-SS-S-TT---SEEEE
T ss_pred hcCCCHHHHHHHHHHHhcCCCCCCCCCceeeeeec
Confidence 35678888999999999998888888999998876
No 110
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=21.40 E-value=4e+02 Score=25.36 Aligned_cols=94 Identities=16% Similarity=0.289 Sum_probs=53.2
Q ss_pred hhhhhcHHHHHHHHHhhccccCCCceEEEEEecccccCCCcchHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccc
Q 018955 94 RRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGES 173 (348)
Q Consensus 94 ~~~a~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s 173 (348)
..+.++++...++++ ++..+.....+.+|.+-=|.+. .+....+...|+++|++|++.|+ .+.|+.+-
T Consensus 80 ~~~l~~~~~R~~fi~-~iv~~~~~~~~dGidiD~E~~~-~~d~~~~~~fl~eL~~~l~~~~~--~lsv~v~~-------- 147 (298)
T cd06549 80 ARLLADPSARAKFIA-NIAAYLERNQADGIVLDFEELP-ADDLPKYVAFLSELRRRLPAQGK--QLTVTVPA-------- 147 (298)
T ss_pred HHHhcCHHHHHHHHH-HHHHHHHHhCCCCEEEecCCCC-hhHHHHHHHHHHHHHHHhhhcCc--EEEEEecC--------
Confidence 345555555444444 3332222234667777666543 23456788899999999998765 23333221
Q ss_pred cCCCCcccccCccchhhHHHHHHhhcCCccccccccccc
Q 018955 174 FPPSRGSFKQDYRPILDPLIRFLNENRSPLLLNLYPYFA 212 (348)
Q Consensus 174 ~pPs~~~f~~d~~~~~~~~l~fL~~~~d~~~vN~yPff~ 212 (348)
....| | +.-|++.+|++.+-.|=|..
T Consensus 148 ---~~~~~--d--------~~~l~~~~D~v~lMtYD~~~ 173 (298)
T cd06549 148 ---DEADW--N--------LKALARNADKLILMAYDEHY 173 (298)
T ss_pred ---CCCCC--C--------HHHHHHhCCEEEEEEeccCC
Confidence 11111 1 12367788999888887654
No 111
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=21.07 E-value=1.3e+02 Score=31.07 Aligned_cols=38 Identities=32% Similarity=0.472 Sum_probs=27.1
Q ss_pred HHHHhhCCCCeEEEecCC------hHHHHHHhcCCCEEEEecCC
Q 018955 53 IALYNQNNIRRMRLYDPN------REALEALRGSNIEVMLGLPN 90 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d------~~vl~A~~~~glkV~lGv~~ 90 (348)
++..+.+|++.+|+|+.- ...++++++.|..+.+.+-.
T Consensus 111 v~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~y 154 (468)
T PRK12581 111 ISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAY 154 (468)
T ss_pred HHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEE
Confidence 456667899999999873 24556677899886555543
No 112
>PRK05309 30S ribosomal protein S11; Validated
Probab=20.96 E-value=2.4e+02 Score=23.87 Aligned_cols=36 Identities=19% Similarity=0.474 Sum_probs=27.3
Q ss_pred HHHHHHHhhCCCCeEEEe--cCC---hHHHHHHhcCCCEEE
Q 018955 50 RDVIALYNQNNIRRMRLY--DPN---REALEALRGSNIEVM 85 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY--~~d---~~vl~A~~~~glkV~ 85 (348)
+.+.+.++..|++.|+++ +.. ..+|+++...|++|.
T Consensus 67 ~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 67 EDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 335566777899999999 332 579999998998865
No 113
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=20.78 E-value=3e+02 Score=28.08 Aligned_cols=90 Identities=19% Similarity=0.301 Sum_probs=56.3
Q ss_pred ChHHHHHHhcCCCEEEEecCCCc--hhhh----h----hcHHHHHHHHHhhccccCCCceEEEEEecccccCCCcchHHH
Q 018955 70 NREALEALRGSNIEVMLGLPNND--LRRI----A----SNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFAQYL 139 (348)
Q Consensus 70 d~~vl~A~~~~glkV~lGv~~~~--~~~~----a----~~~~~a~~wv~~~v~~~~~~~~I~~I~VGNE~l~~~~~~~~L 139 (348)
+..+++.....+++.++++-|.. ...+ + .++ .+.+=+-+++..-.....+++|.++=|.+..+ ..+..
T Consensus 149 ~~~~~~~~~~~~i~~~~~iSN~~~~~~~f~~ela~~lL~ne-t~~~~~i~~ii~~l~~~Gyrgv~iDfE~v~~~-DR~~y 226 (423)
T COG3858 149 NENVIEIAQCRKIKPVPGISNGTRPGANFGGELAQLLLNNE-TAKNRLINNIITLLDARGYRGVNIDFENVGPG-DRELY 226 (423)
T ss_pred CcchhhhhhhcccceeEEEecCCccccccchHHHHHHHhcH-HHHHHHHHHHHHHHHhcCcccEEechhhCCHH-HHHHH
Confidence 35788888899999999999865 1111 1 111 11111112222212234578888888887643 45667
Q ss_pred HHHHHHHHHHHHHcCCCCceEEeeee
Q 018955 140 VPAMRNIQNAINAAGLGNQIKVSTAI 165 (348)
Q Consensus 140 l~~i~~v~~~L~~~gl~~~I~VsT~~ 165 (348)
-..|+++|.+|.+.|+ .++++.
T Consensus 227 t~flR~~r~~l~~~G~----~~siAv 248 (423)
T COG3858 227 TDFLRQVRDALHSGGY----TVSIAV 248 (423)
T ss_pred HHHHHHHHHHhccCCe----EEEEEe
Confidence 7889999999998885 455554
No 114
>PLN03059 beta-galactosidase; Provisional
Probab=20.71 E-value=1.2e+03 Score=26.12 Aligned_cols=115 Identities=11% Similarity=0.096 Sum_probs=71.7
Q ss_pred HHHHHHHhhCCCCeEEEecC-----------C-------hHHHHHHhcCCCEEEEecCC--------Cchhh--------
Q 018955 50 RDVIALYNQNNIRRMRLYDP-----------N-------REALEALRGSNIEVMLGLPN--------NDLRR-------- 95 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY~~-----------d-------~~vl~A~~~~glkV~lGv~~--------~~~~~-------- 95 (348)
.+.++.+|..|++.|-+|-. | ..-|+.+++.||.|+|=... +.++.
T Consensus 62 ~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i 141 (840)
T PLN03059 62 PDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGI 141 (840)
T ss_pred HHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCc
Confidence 45677888999999999932 1 24667778899999884321 01111
Q ss_pred -hh-hc---HHHHHHHHHhhccc-----c--CCCceEEEEEecccccCC-CcchHHHHHHHHHHHHHHHHcCCCCceEEe
Q 018955 96 -IA-SN---QAEANTWVQNNVRN-----F--ANNVKFKYIAVGNEAKPG-DNFAQYLVPAMRNIQNAINAAGLGNQIKVS 162 (348)
Q Consensus 96 -~a-~~---~~~a~~wv~~~v~~-----~--~~~~~I~~I~VGNE~l~~-~~~~~~Ll~~i~~v~~~L~~~gl~~~I~Vs 162 (348)
+. .+ .++.++|+..-+.. + -.+..|..+-|-||--.- .+.-..--.||+.+++.++++|+. ||.-
T Consensus 142 ~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl~ 219 (840)
T PLN03059 142 EFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTG--VPWV 219 (840)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCC--cceE
Confidence 00 11 23555665433221 1 135679999999995321 011122367999999999999984 8887
Q ss_pred eeee
Q 018955 163 TAIE 166 (348)
Q Consensus 163 T~~~ 166 (348)
|.+.
T Consensus 220 t~dg 223 (840)
T PLN03059 220 MCKQ 223 (840)
T ss_pred ECCC
Confidence 7764
No 115
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=20.39 E-value=3.8e+02 Score=25.11 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=25.9
Q ss_pred ccEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 018955 263 LGIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVK 299 (348)
Q Consensus 263 ~~v~I~ETGWPS~G~~~~vas~~na~~y~~~~~~~~~ 299 (348)
.-+.|||+|.+.... . ...+.|+.++...++.++
T Consensus 91 ~~~aIGEiGLD~~~~-~--~~~~~Q~~vf~~ql~lA~ 124 (258)
T PRK11449 91 KVVAVGEIGLDLFGD-D--PQFERQQWLLDEQLKLAK 124 (258)
T ss_pred CEEEEEecccCCCCC-C--CCHHHHHHHHHHHHHHHH
Confidence 467899999996432 2 456778999999888875
No 116
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=20.37 E-value=1.2e+02 Score=31.02 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=27.9
Q ss_pred HHHHhhCCCCeEEEecC--C----hHHHHHHhcCCCEEEEecCC
Q 018955 53 IALYNQNNIRRMRLYDP--N----REALEALRGSNIEVMLGLPN 90 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~--d----~~vl~A~~~~glkV~lGv~~ 90 (348)
++....+|++.+|+||+ | ...++++++.|..+...+-.
T Consensus 104 v~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~Y 147 (472)
T COG5016 104 VEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISY 147 (472)
T ss_pred HHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEe
Confidence 34445689999999998 3 35778888888776666554
No 117
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.27 E-value=7.8e+02 Score=23.67 Aligned_cols=71 Identities=11% Similarity=0.024 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHHHHHHHcCCCCceEEeeeeeccccccccCC--CCccc--ccCccchhhHHHHHHhhcCCccccccccc
Q 018955 135 FAQYLVPAMRNIQNAINAAGLGNQIKVSTAIETGALGESFPP--SRGSF--KQDYRPILDPLIRFLNENRSPLLLNLYPY 210 (348)
Q Consensus 135 ~~~~Ll~~i~~v~~~L~~~gl~~~I~VsT~~~~~~~~~s~pP--s~~~f--~~d~~~~~~~~l~fL~~~~d~~~vN~yPf 210 (348)
..+++...+++.|+. +||+..-.--.-|.....+ ..|.| +++.-|..+.+++.|.+.+=-++++++|+
T Consensus 22 ~~~~v~~~~~~~~~~--------~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~ 93 (317)
T cd06598 22 NWQEVDDTIKTLREK--------DFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPF 93 (317)
T ss_pred CHHHHHHHHHHHHHh--------CCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCc
Confidence 467788888888764 4777765432112110000 11233 22222456788888988888899999998
Q ss_pred ccc
Q 018955 211 FAI 213 (348)
Q Consensus 211 f~~ 213 (348)
...
T Consensus 94 v~~ 96 (317)
T cd06598 94 VLK 96 (317)
T ss_pred ccC
Confidence 764
Done!