Query 018956
Match_columns 348
No_of_seqs 143 out of 1546
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 05:29:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00817 tpt Tpt phosphate/ph 100.0 5.7E-36 1.2E-40 270.6 25.3 287 10-298 2-296 (302)
2 PTZ00343 triose or hexose phos 100.0 8.6E-34 1.9E-38 260.1 31.4 287 8-296 47-349 (350)
3 KOG1441 Glucose-6-phosphate/ph 100.0 2E-34 4.3E-39 254.2 14.0 296 5-302 12-314 (316)
4 KOG1444 Nucleotide-sugar trans 100.0 1.5E-29 3.3E-34 218.1 24.8 300 5-304 7-309 (314)
5 PLN00411 nodulin MtN21 family 100.0 8.9E-29 1.9E-33 226.0 30.2 287 8-300 11-333 (358)
6 PF06027 DUF914: Eukaryotic pr 100.0 1.2E-28 2.5E-33 220.6 28.1 270 26-302 29-312 (334)
7 PF08449 UAA: UAA transporter 100.0 1.9E-27 4.2E-32 214.7 28.4 275 25-300 15-302 (303)
8 PRK11689 aromatic amino acid e 100.0 5.6E-27 1.2E-31 210.9 29.9 273 4-297 2-289 (295)
9 PRK11453 O-acetylserine/cystei 100.0 7.8E-26 1.7E-30 204.0 30.0 277 8-297 6-289 (299)
10 PRK15430 putative chlorampheni 100.0 7.1E-26 1.5E-30 203.9 26.6 278 1-297 3-287 (296)
11 PRK11272 putative DMT superfam 100.0 2.2E-25 4.8E-30 200.4 29.4 271 15-298 13-288 (292)
12 KOG1442 GDP-fucose transporter 99.9 6.2E-29 1.4E-33 207.7 4.9 303 8-311 26-343 (347)
13 KOG1443 Predicted integral mem 99.9 7.1E-26 1.5E-30 192.6 22.9 284 8-293 14-313 (349)
14 TIGR00950 2A78 Carboxylate/Ami 99.9 1.6E-25 3.6E-30 198.2 26.5 252 26-290 5-259 (260)
15 PRK10532 threonine and homoser 99.9 6E-25 1.3E-29 197.6 30.1 266 12-297 14-283 (293)
16 COG5070 VRG4 Nucleotide-sugar 99.9 1.9E-25 4.2E-30 181.5 17.6 289 12-302 8-303 (309)
17 TIGR03340 phn_DUF6 phosphonate 99.9 4.6E-21 1E-25 171.4 23.3 242 45-292 31-280 (281)
18 KOG1581 UDP-galactose transpor 99.9 8.3E-20 1.8E-24 155.9 25.3 262 36-299 46-317 (327)
19 COG5006 rhtA Threonine/homoser 99.9 7.3E-20 1.6E-24 152.1 23.2 249 28-295 30-282 (292)
20 COG0697 RhaT Permeases of the 99.9 1.2E-18 2.5E-23 156.6 32.3 263 20-296 17-288 (292)
21 TIGR00688 rarD rarD protein. T 99.9 1.3E-19 2.8E-24 160.0 25.1 243 7-270 3-255 (256)
22 KOG2234 Predicted UDP-galactos 99.9 8.4E-19 1.8E-23 154.0 27.7 286 10-299 15-326 (345)
23 KOG3912 Predicted integral mem 99.9 1.6E-19 3.5E-24 152.0 20.3 283 16-298 9-337 (372)
24 KOG1580 UDP-galactose transpor 99.8 7.1E-20 1.5E-24 150.4 16.0 255 37-293 49-311 (337)
25 COG2962 RarD Predicted permeas 99.8 6.2E-18 1.3E-22 144.5 26.8 278 5-302 6-290 (293)
26 KOG2765 Predicted membrane pro 99.8 1.3E-18 2.8E-23 152.6 19.4 218 79-298 166-393 (416)
27 KOG1582 UDP-galactose transpor 99.8 1E-18 2.3E-23 146.4 17.5 292 5-297 37-334 (367)
28 KOG4510 Permease of the drug/m 99.8 1.1E-20 2.4E-25 157.9 4.9 274 7-295 36-325 (346)
29 PF04142 Nuc_sug_transp: Nucle 99.8 1.4E-18 2.9E-23 150.7 18.1 212 70-285 15-243 (244)
30 TIGR00776 RhaT RhaT L-rhamnose 99.8 6.8E-17 1.5E-21 144.7 25.3 261 8-295 3-288 (290)
31 KOG1583 UDP-N-acetylglucosamin 99.8 2.2E-18 4.8E-23 144.9 14.1 272 27-300 20-319 (330)
32 KOG2766 Predicted membrane pro 99.7 1.4E-18 3E-23 144.6 5.1 260 25-296 33-300 (336)
33 PF03151 TPT: Triose-phosphate 99.7 2E-16 4.4E-21 128.4 13.6 143 153-295 1-153 (153)
34 TIGR00803 nst UDP-galactose tr 99.4 5.4E-12 1.2E-16 108.9 11.4 194 96-293 2-222 (222)
35 COG2510 Predicted membrane pro 99.2 1.3E-10 2.7E-15 87.2 10.5 135 153-294 4-138 (140)
36 PF00892 EamA: EamA-like trans 99.1 3.9E-10 8.5E-15 87.8 9.9 124 162-294 1-125 (126)
37 PF00892 EamA: EamA-like trans 99.1 3.3E-10 7.2E-15 88.2 8.7 114 25-142 6-124 (126)
38 PF06800 Sugar_transport: Suga 99.1 1.6E-08 3.4E-13 87.8 19.5 205 74-292 47-268 (269)
39 KOG4314 Predicted carbohydrate 99.1 1.5E-09 3.3E-14 87.6 11.4 215 77-298 58-279 (290)
40 PF13536 EmrE: Multidrug resis 99.1 9.3E-10 2E-14 84.3 9.2 102 46-148 2-110 (113)
41 COG2510 Predicted membrane pro 99.0 8.9E-09 1.9E-13 77.4 10.7 117 25-144 18-139 (140)
42 TIGR00688 rarD rarD protein. T 98.9 3E-08 6.6E-13 87.5 13.8 140 152-294 2-141 (256)
43 PRK15430 putative chlorampheni 98.8 9.5E-08 2.1E-12 86.2 14.8 141 148-294 4-144 (296)
44 TIGR03340 phn_DUF6 phosphonate 98.8 2.6E-07 5.5E-12 82.7 15.1 133 154-295 3-135 (281)
45 PF05653 Mg_trans_NIPA: Magnes 98.7 3.3E-07 7.2E-12 82.1 14.9 206 80-295 58-292 (300)
46 TIGR00950 2A78 Carboxylate/Ami 98.7 9.2E-07 2E-11 78.1 15.5 121 19-140 137-260 (260)
47 PLN00411 nodulin MtN21 family 98.6 2.4E-06 5.3E-11 78.7 15.3 139 151-295 12-156 (358)
48 COG2962 RarD Predicted permeas 98.4 1.3E-05 2.8E-10 69.5 13.4 142 149-296 4-145 (293)
49 PRK15051 4-amino-4-deoxy-L-ara 98.3 2E-06 4.4E-11 65.2 7.6 64 80-143 45-108 (111)
50 PRK13499 rhamnose-proton sympo 98.3 0.00053 1.2E-08 62.3 24.0 221 74-296 75-342 (345)
51 PRK02971 4-amino-4-deoxy-L-ara 98.2 4.6E-05 9.9E-10 59.3 12.9 119 152-295 2-122 (129)
52 PRK10532 threonine and homoser 98.2 3.4E-05 7.3E-10 69.5 13.6 115 25-144 163-281 (293)
53 PRK11272 putative DMT superfam 98.2 6.4E-05 1.4E-09 67.6 15.3 130 154-295 10-141 (292)
54 PRK11689 aromatic amino acid e 98.2 5.8E-05 1.3E-09 68.0 14.5 130 152-295 4-137 (295)
55 PF03151 TPT: Triose-phosphate 98.2 7.9E-05 1.7E-09 60.1 13.5 119 24-143 14-152 (153)
56 PRK11453 O-acetylserine/cystei 98.1 0.00012 2.6E-09 66.2 15.3 125 154-295 6-132 (299)
57 PTZ00343 triose or hexose phos 98.1 0.00016 3.5E-09 66.7 15.4 134 154-294 51-185 (350)
58 PF13536 EmrE: Multidrug resis 98.0 6.5E-05 1.4E-09 57.4 9.9 71 226-297 37-108 (113)
59 TIGR00817 tpt Tpt phosphate/ph 98.0 0.00027 5.8E-09 63.9 14.7 121 165-293 15-135 (302)
60 TIGR00776 RhaT RhaT L-rhamnose 97.9 0.00014 3.1E-09 65.2 11.9 129 153-294 2-135 (290)
61 PF04657 DUF606: Protein of un 97.9 0.00073 1.6E-08 53.3 13.5 132 153-292 2-138 (138)
62 PRK02971 4-amino-4-deoxy-L-ara 97.9 7.1E-05 1.5E-09 58.3 7.5 72 75-146 50-124 (129)
63 KOG2922 Uncharacterized conser 97.8 5.7E-05 1.2E-09 66.4 7.3 204 76-293 67-304 (335)
64 COG2076 EmrE Membrane transpor 97.8 0.00026 5.6E-09 52.3 9.5 73 72-144 30-103 (106)
65 PRK10650 multidrug efflux syst 97.8 0.00034 7.4E-09 52.5 10.4 68 75-142 38-106 (109)
66 PRK10452 multidrug efflux syst 97.8 0.00028 6.1E-09 53.9 10.0 71 74-144 32-103 (120)
67 PF08449 UAA: UAA transporter 97.8 0.00058 1.3E-08 61.8 13.8 126 164-298 12-139 (303)
68 PRK15051 4-amino-4-deoxy-L-ara 97.7 0.00021 4.5E-09 54.2 8.4 59 236-294 50-108 (111)
69 PRK11431 multidrug efflux syst 97.7 0.00052 1.1E-08 51.2 9.8 69 75-143 32-101 (105)
70 PF06027 DUF914: Eukaryotic pr 97.7 0.0011 2.3E-08 60.3 13.3 139 152-296 13-152 (334)
71 PRK09541 emrE multidrug efflux 97.7 0.00065 1.4E-08 51.2 9.7 69 76-144 34-103 (110)
72 COG4975 GlcU Putative glucose 97.6 1.3E-05 2.8E-10 67.5 0.1 204 78-295 65-285 (288)
73 COG0697 RhaT Permeases of the 97.6 0.0029 6.3E-08 56.4 15.3 141 150-298 5-146 (292)
74 PF07857 DUF1632: CEO family ( 97.6 0.00018 4E-09 62.4 7.1 132 153-300 1-139 (254)
75 PRK10650 multidrug efflux syst 97.5 0.0044 9.6E-08 46.5 11.9 58 237-294 49-107 (109)
76 PRK10452 multidrug efflux syst 97.5 0.0011 2.5E-08 50.6 8.7 60 237-296 44-104 (120)
77 PF00893 Multi_Drug_Res: Small 97.4 0.0014 3.1E-08 47.9 8.7 59 77-135 34-93 (93)
78 PRK09541 emrE multidrug efflux 97.4 0.0018 3.8E-08 48.9 8.7 59 238-296 45-104 (110)
79 COG3238 Uncharacterized protei 97.3 0.015 3.3E-07 46.0 13.2 137 151-294 4-145 (150)
80 PF06800 Sugar_transport: Suga 97.2 0.0077 1.7E-07 52.7 12.4 100 41-140 164-267 (269)
81 PRK11431 multidrug efflux syst 97.2 0.0038 8.1E-08 46.6 8.5 59 237-295 43-102 (105)
82 PF04142 Nuc_sug_transp: Nucle 97.1 0.0021 4.5E-08 56.1 7.6 75 224-298 18-92 (244)
83 COG2076 EmrE Membrane transpor 97.0 0.0047 1E-07 45.7 8.0 59 238-296 45-104 (106)
84 PRK13499 rhamnose-proton sympo 97.0 0.0077 1.7E-07 54.9 10.5 140 151-297 6-155 (345)
85 KOG4510 Permease of the drug/m 96.7 0.00036 7.9E-09 59.7 -0.6 135 151-297 37-171 (346)
86 PF05653 Mg_trans_NIPA: Magnes 96.6 0.0073 1.6E-07 54.3 7.1 117 150-294 5-121 (300)
87 COG5006 rhtA Threonine/homoser 96.4 0.049 1.1E-06 46.7 10.6 95 45-141 180-279 (292)
88 PF10639 UPF0546: Uncharacteri 96.4 0.011 2.4E-07 44.6 5.8 68 76-143 45-113 (113)
89 TIGR00803 nst UDP-galactose tr 96.3 0.097 2.1E-06 44.9 12.6 68 74-141 154-221 (222)
90 PF04657 DUF606: Protein of un 96.3 0.28 6.1E-06 38.7 13.6 113 26-141 17-138 (138)
91 KOG1581 UDP-galactose transpor 95.8 0.11 2.4E-06 45.8 10.0 134 7-141 169-310 (327)
92 KOG2234 Predicted UDP-galactos 95.7 0.55 1.2E-05 42.5 14.3 140 154-294 17-163 (345)
93 PF00893 Multi_Drug_Res: Small 95.5 0.05 1.1E-06 39.8 5.9 49 238-286 44-93 (93)
94 KOG2765 Predicted membrane pro 94.6 0.048 1E-06 49.4 4.5 76 225-300 161-236 (416)
95 KOG1441 Glucose-6-phosphate/ph 94.5 0.11 2.3E-06 46.9 6.3 134 9-144 163-307 (316)
96 PF10639 UPF0546: Uncharacteri 94.3 0.26 5.6E-06 37.2 7.1 108 159-292 3-111 (113)
97 KOG1580 UDP-galactose transpor 93.3 0.44 9.5E-06 40.5 7.4 66 236-301 98-163 (337)
98 COG3238 Uncharacterized protei 93.1 3.7 8.1E-05 32.6 12.6 104 39-143 32-145 (150)
99 PF06379 RhaT: L-rhamnose-prot 93.0 7 0.00015 35.5 20.2 220 73-293 74-338 (344)
100 PF06379 RhaT: L-rhamnose-prot 92.5 2.1 4.7E-05 38.7 11.1 145 151-300 6-158 (344)
101 COG4975 GlcU Putative glucose 92.1 0.22 4.7E-06 42.7 4.2 130 152-295 2-136 (288)
102 PF07168 Ureide_permease: Urei 89.6 0.43 9.3E-06 42.2 3.8 135 158-295 2-146 (336)
103 COG5070 VRG4 Nucleotide-sugar 89.1 6.2 0.00013 33.5 10.0 123 18-141 163-293 (309)
104 PF05297 Herpes_LMP1: Herpesvi 88.3 0.14 3.1E-06 44.4 0.0 92 96-188 47-142 (381)
105 KOG1444 Nucleotide-sugar trans 87.8 20 0.00044 32.2 12.9 136 153-295 13-149 (314)
106 KOG4314 Predicted carbohydrate 86.8 0.39 8.4E-06 39.7 1.7 62 235-296 65-126 (290)
107 PRK02237 hypothetical protein; 85.9 6.3 0.00014 29.3 7.3 47 250-296 60-106 (109)
108 KOG2922 Uncharacterized conser 85.1 0.24 5.1E-06 44.2 -0.4 121 148-296 17-137 (335)
109 PF02694 UPF0060: Uncharacteri 83.7 5.8 0.00013 29.4 6.3 48 250-297 58-105 (107)
110 PF04342 DUF486: Protein of un 76.0 29 0.00064 25.7 8.8 52 91-142 54-106 (108)
111 COG3169 Uncharacterized protei 74.4 31 0.00067 25.1 9.2 29 114-142 85-113 (116)
112 KOG4831 Unnamed protein [Funct 71.4 4.8 0.0001 29.7 2.9 63 81-143 61-124 (125)
113 KOG1442 GDP-fucose transporter 71.2 3.7 8E-05 36.0 2.7 54 239-292 118-171 (347)
114 KOG3912 Predicted integral mem 70.5 8.1 0.00018 34.1 4.6 57 237-293 100-156 (372)
115 KOG2766 Predicted membrane pro 70.3 0.75 1.6E-05 39.7 -1.6 65 232-296 87-151 (336)
116 PRK13108 prolipoprotein diacyl 67.4 1.2E+02 0.0026 29.2 20.2 24 275-298 254-277 (460)
117 TIGR00806 rfc RFC reduced fola 67.0 1.1E+02 0.0023 29.9 11.7 21 7-27 91-111 (511)
118 PF07857 DUF1632: CEO family ( 65.0 98 0.0021 27.2 11.9 101 41-144 27-134 (254)
119 PF05961 Chordopox_A13L: Chord 63.7 10 0.00022 25.4 3.0 25 279-303 6-30 (68)
120 TIGR00939 2a57 Equilibrative N 63.6 64 0.0014 30.8 9.7 17 279-295 178-194 (437)
121 PRK02237 hypothetical protein; 59.4 72 0.0016 23.8 10.5 47 98-144 58-105 (109)
122 PF04277 OAD_gamma: Oxaloaceta 59.1 12 0.00027 26.0 3.1 11 280-290 9-19 (79)
123 COG1742 Uncharacterized conser 58.6 34 0.00073 25.3 5.2 46 251-296 60-105 (109)
124 COG1742 Uncharacterized conser 57.9 75 0.0016 23.5 9.8 37 109-145 69-105 (109)
125 PF04342 DUF486: Protein of un 56.5 14 0.00031 27.3 3.0 28 264-291 77-104 (108)
126 PTZ00359 hypothetical protein; 54.6 1.9E+02 0.0041 27.2 12.1 19 275-293 357-375 (443)
127 PF02694 UPF0060: Uncharacteri 54.0 90 0.0019 23.3 10.5 37 108-144 67-103 (107)
128 KOG1443 Predicted integral mem 52.0 55 0.0012 29.4 6.4 72 225-296 86-157 (349)
129 TIGR00892 2A0113 monocarboxyla 49.3 1.4E+02 0.0031 28.4 9.7 15 277-291 401-415 (455)
130 KOG3762 Predicted transporter 48.4 1.2E+02 0.0027 29.8 8.7 18 281-298 534-551 (618)
131 PF06365 CD34_antigen: CD34/Po 47.8 36 0.00078 28.6 4.5 18 283-300 112-129 (202)
132 KOG1582 UDP-galactose transpor 47.5 80 0.0017 28.0 6.6 50 97-146 285-334 (367)
133 PF06679 DUF1180: Protein of u 47.4 30 0.00066 28.0 3.9 8 316-323 137-144 (163)
134 PHA03049 IMV membrane protein; 47.1 25 0.00054 23.5 2.7 24 279-302 6-29 (68)
135 TIGR00910 2A0307_GadC glutamat 46.5 2.5E+02 0.0055 27.4 11.0 15 286-300 450-464 (507)
136 KOG0847 Transcription factor, 46.1 21 0.00045 30.1 2.8 20 325-344 248-267 (288)
137 KOG1583 UDP-N-acetylglucosamin 44.5 1.1E+02 0.0024 27.2 7.1 133 10-143 164-313 (330)
138 PRK15432 autoinducer 2 ABC tra 43.7 74 0.0016 29.3 6.4 24 276-299 287-310 (344)
139 TIGR02865 spore_II_E stage II 43.3 4E+02 0.0087 27.7 15.0 43 100-142 12-54 (764)
140 PF06570 DUF1129: Protein of u 39.5 2.3E+02 0.005 23.8 10.4 11 115-125 192-202 (206)
141 COG3086 RseC Positive regulato 39.1 47 0.001 26.2 3.7 28 244-271 69-96 (150)
142 PRK06638 NADH:ubiquinone oxido 39.0 2.3E+02 0.0051 23.7 13.6 26 265-290 134-159 (198)
143 PF05977 MFS_3: Transmembrane 38.9 3.9E+02 0.0085 26.3 26.0 18 252-269 349-366 (524)
144 PF05297 Herpes_LMP1: Herpesvi 38.4 9 0.0002 33.7 -0.4 58 239-296 124-185 (381)
145 PF07444 Ycf66_N: Ycf66 protei 38.0 34 0.00073 24.3 2.5 28 273-300 3-30 (84)
146 PF01102 Glycophorin_A: Glycop 36.7 26 0.00056 26.9 1.9 9 290-298 83-91 (122)
147 PF08507 COPI_assoc: COPI asso 36.0 2.1E+02 0.0045 22.2 11.1 35 259-294 70-104 (136)
148 PF08627 CRT-like: CRT-like; 35.1 1.1E+02 0.0023 23.6 4.9 39 8-47 55-93 (130)
149 COG5336 Uncharacterized protei 34.8 1.7E+02 0.0037 21.9 5.7 38 260-297 56-94 (116)
150 PF06396 AGTRAP: Angiotensin I 34.1 2.6E+02 0.0055 22.7 8.8 32 241-272 44-75 (162)
151 PF12794 MscS_TM: Mechanosensi 32.4 4E+02 0.0087 24.5 11.0 11 285-295 236-246 (340)
152 PF10225 DUF2215: Uncharacteri 30.6 3.7E+02 0.008 23.5 8.5 44 241-284 113-156 (249)
153 PF15102 TMEM154: TMEM154 prot 30.5 61 0.0013 25.6 3.1 20 282-301 68-87 (146)
154 TIGR00822 EII-Sor PTS system, 30.2 3.9E+02 0.0085 23.7 13.4 34 153-186 103-139 (265)
155 PLN00028 nitrate transmembrane 30.1 5E+02 0.011 24.9 13.3 20 277-296 413-432 (476)
156 PRK11715 inner membrane protei 29.4 3.8E+02 0.0083 25.6 8.8 123 47-169 306-432 (436)
157 PF07214 DUF1418: Protein of u 28.9 92 0.002 22.7 3.5 11 282-292 45-55 (96)
158 KOG4812 Golgi-associated prote 28.7 97 0.0021 26.7 4.2 21 274-294 218-238 (262)
159 COG3169 Uncharacterized protei 28.4 1.3E+02 0.0028 22.0 4.2 40 253-292 69-112 (116)
160 PF06123 CreD: Inner membrane 27.7 4.8E+02 0.01 25.0 9.1 123 47-169 300-426 (430)
161 PRK11357 frlA putative fructos 26.8 5.5E+02 0.012 24.3 13.6 20 280-299 418-437 (445)
162 PF13038 DUF3899: Domain of un 26.2 39 0.00086 24.2 1.3 20 277-296 4-23 (92)
163 PF10731 Anophelin: Thrombin i 26.1 1.3E+02 0.0028 19.7 3.4 11 314-324 34-44 (65)
164 PF03547 Mem_trans: Membrane t 25.8 1.5E+02 0.0033 27.4 5.6 8 260-267 112-119 (385)
165 PRK02463 OxaA-like protein pre 25.4 5.1E+02 0.011 23.5 8.8 13 172-184 124-136 (307)
166 COG0387 ChaA Ca2+/H+ antiporte 25.2 5.6E+02 0.012 23.9 13.6 19 274-292 162-180 (368)
167 PF06946 Phage_holin_5: Phage 24.8 2.8E+02 0.006 20.2 6.1 59 240-298 21-83 (93)
168 PRK12437 prolipoprotein diacyl 24.0 66 0.0014 28.5 2.6 22 275-296 235-256 (269)
169 PF15471 TMEM171: Transmembran 24.0 1.7E+02 0.0036 25.8 4.8 22 277-298 161-182 (319)
170 PRK09412 anaerobic C4-dicarbox 23.5 6.6E+02 0.014 24.0 10.9 13 112-124 7-19 (433)
171 PRK09776 putative diguanylate 23.3 9.5E+02 0.021 25.8 13.0 22 153-174 71-92 (1092)
172 PF04246 RseC_MucC: Positive r 23.0 87 0.0019 24.3 2.8 26 246-271 64-89 (135)
173 PF14851 FAM176: FAM176 family 22.9 1.6E+02 0.0035 23.6 4.3 8 282-289 33-40 (153)
174 PF13937 DUF4212: Domain of un 22.6 2.9E+02 0.0062 19.5 6.7 51 9-59 12-65 (81)
175 PF11446 DUF2897: Protein of u 22.5 84 0.0018 20.3 2.1 14 283-296 8-21 (55)
176 PF09586 YfhO: Bacterial membr 22.5 9E+02 0.019 25.2 19.5 110 42-169 93-202 (843)
177 PRK12586 putative monovalent c 22.3 2.2E+02 0.0048 22.6 4.9 15 250-264 44-58 (145)
178 PF03806 ABG_transport: AbgT p 22.3 7.1E+02 0.015 24.4 9.2 38 148-187 77-118 (502)
179 PF07123 PsbW: Photosystem II 22.2 81 0.0018 24.6 2.3 30 147-176 101-130 (138)
180 PRK02935 hypothetical protein; 21.9 3.4E+02 0.0074 20.2 5.6 22 277-298 42-63 (110)
181 COG2332 CcmE Cytochrome c-type 21.9 1.4E+02 0.003 23.8 3.6 28 1-28 1-28 (153)
182 COG2271 UhpC Sugar phosphate p 21.6 6.9E+02 0.015 24.0 8.7 47 253-300 163-210 (448)
183 PF11628 TCR_zetazeta: T-cell 21.3 1.7E+02 0.0037 16.6 2.9 25 103-127 7-31 (33)
184 PRK14397 membrane protein; Pro 21.3 5.3E+02 0.011 22.1 11.8 20 152-171 48-67 (222)
185 PRK14789 lipoprotein signal pe 20.9 5E+02 0.011 21.7 8.2 15 260-274 102-116 (191)
186 PF15431 TMEM190: Transmembran 20.9 1.8E+02 0.0039 21.7 3.8 24 278-301 66-89 (134)
187 KOG0252 Inorganic phosphate tr 20.9 1.6E+02 0.0036 28.5 4.5 27 277-303 224-250 (538)
No 1
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=5.7e-36 Score=270.61 Aligned_cols=287 Identities=19% Similarity=0.193 Sum_probs=234.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHcc---ccccCCCCcchhHHHHHHHHHHH
Q 018956 10 GTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMK---LFEHKPFDPRAVMGFGVLNGISI 86 (348)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 86 (348)
..+...++|++.+++.++.||++++ ++++|+.+++.|+.++.+.+.+....+ +.+.++.+++.+.+.|++++++.
T Consensus 2 ~~~~~~~~w~~~~~~~~~~NK~~l~--~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 79 (302)
T TIGR00817 2 QTGLLFGLWYFLNVYFNIYNKKLLN--VFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGH 79 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999999998 588999999999999988776653222 22233446677888899988999
Q ss_pred hhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccccccchhHHHHHHHHHHHHHH
Q 018956 87 GLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCV 166 (348)
Q Consensus 87 ~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~s~~~~a~ 166 (348)
.+.|.+++|++++.+++++++.|+++++++++++|||++++++.+++++++|+.+....+.+.+..|++++++++++|++
T Consensus 80 ~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~ 159 (302)
T TIGR00817 80 VTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVS 159 (302)
T ss_pred HHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987766667778899999999999999
Q ss_pred HHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhccccccccc-cc--ccC-chhHHHHHHHHH-HHHHHHHHHH
Q 018956 167 AQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVF-AF--KYT-PYVLFFIVLSCL-ISVSVNFSTF 241 (348)
Q Consensus 167 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~--~~~-~~~~~~~~~~~~-~~~~~~~~~~ 241 (348)
|.++.||..++++.|+.+.+.|+...+.+.++|.....++.......+ .. ... ...+...+..+. +....+...+
T Consensus 160 ~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (302)
T TIGR00817 160 RNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAF 239 (302)
T ss_pred HHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988755689999999999999988888876655422111000 00 011 112222333333 3334455667
Q ss_pred hhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcc
Q 018956 242 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS 298 (348)
Q Consensus 242 ~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~ 298 (348)
.++++++|++.++.++++|+++++.|++++||++|+.+++|.++++.|+.+|+..|.
T Consensus 240 ~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~ 296 (302)
T TIGR00817 240 MLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKA 296 (302)
T ss_pred HHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999999999987543
No 2
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=8.6e-34 Score=260.08 Aligned_cols=287 Identities=19% Similarity=0.217 Sum_probs=239.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccC-----CCCcchhHHHHHHH
Q 018956 8 QLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHK-----PFDPRAVMGFGVLN 82 (348)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 82 (348)
.+..+...+.|+..++..++.||++++ .+|+|++++++|++++++++.+.+..+.++.+ +.++++.++.|+++
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~--~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~ 124 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALN--MLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCH 124 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH--hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 677788899999999999999999999 68899999999999998876655443322211 22456788889988
Q ss_pred HHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccccccchhHHHHHHHHHH
Q 018956 83 GISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVL 162 (348)
Q Consensus 83 ~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~s~~ 162 (348)
.......+.++++++++.+++++++.|+++++++++++|||++++++.+++++++|+.+.+..+.+++..|++++++|++
T Consensus 125 ~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~ 204 (350)
T PTZ00343 125 LFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNL 204 (350)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHH
Confidence 77777788999999999999999999999999999999999999999999999999999988888888899999999999
Q ss_pred HHHHHHHHHHHHhhhc-----CCCHHHHHHhhhHHHHHHHHHHHHHhhcccccc------cccccccCchhHHHHHHHHH
Q 018956 163 TTCVAQIMTNTIQKKF-----KVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNK------NVFAFKYTPYVLFFIVLSCL 231 (348)
Q Consensus 163 ~~a~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 231 (348)
++++|+++.|+..+++ +.++.+...+....+++.++|..+..|+..... ...........+..++.+++
T Consensus 205 ~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l 284 (350)
T PTZ00343 205 GSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGV 284 (350)
T ss_pred HHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHH
Confidence 9999999999988754 366777777778889999888877665421100 00001111233445666777
Q ss_pred HHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018956 232 ISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 296 (348)
Q Consensus 232 ~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 296 (348)
..++++...+.++++++|.++++.++++|++++++|++++||++|+.+++|.++++.|+.+|+..
T Consensus 285 ~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 285 WYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 77788888889999999999999999999999999999999999999999999999999999875
No 3
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=2e-34 Score=254.20 Aligned_cols=296 Identities=31% Similarity=0.485 Sum_probs=259.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCC----CCcchhHHHHH
Q 018956 5 QKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKP----FDPRAVMGFGV 80 (348)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~ 80 (348)
++.......+...|.+.+++..+.||+++++++|++|++++..+...+.+........+..+.++ .+++..+++|+
T Consensus 12 ~~~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~ 91 (316)
T KOG1441|consen 12 LKKILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGL 91 (316)
T ss_pred cchhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHH
Confidence 34556666789999999999999999999999999999999998888888888877766554443 57789999999
Q ss_pred HHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccccccchhHHHHHHHH
Q 018956 81 LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLA 160 (348)
Q Consensus 81 ~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~s 160 (348)
.++++.++.|.++.++|++.+++++.++|+++.++++++.+|+++...+.++..+..|+.+++..|.++|+.|.+.++++
T Consensus 92 ~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s 171 (316)
T KOG1441|consen 92 VFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMIS 171 (316)
T ss_pred HHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh--hhcCCCHHHHHHhhhHHHHHHHH-HHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHH
Q 018956 161 VLTTCVAQIMTNTIQ--KKFKVSSTQLLYQSCPYQALTLF-IIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVN 237 (348)
Q Consensus 161 ~~~~a~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (348)
.+..++++++.++.. |+++.|+.+++.|+.+++...++ |.....++... .......++...+..+ +..++++.+|
T Consensus 172 ~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~sv~~f~~N 249 (316)
T KOG1441|consen 172 NLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-VGFLTAPWFVTFLILL-LNSVLAFLLN 249 (316)
T ss_pred HHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccce-eeeeccccchhhHHHH-HHHHHHHHHH
Confidence 999999999999998 46789999999999999999988 66655554433 1011123333344444 4449999999
Q ss_pred HHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcccccc
Q 018956 238 FSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQ 302 (348)
Q Consensus 238 ~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~~ 302 (348)
...+.++.+++|++.++.+.+|.++.++.|+++|+++.|+.+..|+++.++|+.+|++.|.++++
T Consensus 250 ls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 250 LSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred HHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999988775543
No 4
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.5e-29 Score=218.13 Aligned_cols=300 Identities=23% Similarity=0.300 Sum_probs=261.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCCCCc---chhHHHHHH
Q 018956 5 QKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDP---RAVMGFGVL 81 (348)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~ 81 (348)
++.........+.|+.++..+.+.||+++++++||...++..+|++.+.+.+....+.+-.+.++.++ +++++++++
T Consensus 7 ~~~~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~l 86 (314)
T KOG1444|consen 7 SKKQSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLL 86 (314)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHH
Confidence 34455567889999999999999999999988888888888899999999999988877666665554 689999999
Q ss_pred HHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccccccchhHHHHHHHHH
Q 018956 82 NGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAV 161 (348)
Q Consensus 82 ~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~s~ 161 (348)
+.++......+++|+++++++++++..|+++++...+++|.|++...|.++....+|.......|.+++..|+.+.+...
T Consensus 87 f~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~ 166 (314)
T KOG1444|consen 87 FVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANC 166 (314)
T ss_pred HHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHHHHH
Q 018956 162 LTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTF 241 (348)
Q Consensus 162 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (348)
++.+.+.++.|+..+..+.+.+.+++|..+...+.+.....+.+++.......+.......+..+.++|+++++.++..+
T Consensus 167 ~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~ 246 (314)
T KOG1444|consen 167 LTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSF 246 (314)
T ss_pred HHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888899999999999999888877776666544111222223345677889999999999999999
Q ss_pred hhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcccccccc
Q 018956 242 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQK 304 (348)
Q Consensus 242 ~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~~~~ 304 (348)
++.+.+++++.++++......+.+...++.|++.++..++|..+-+.|.++|++.+.++++.+
T Consensus 247 ~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~ 309 (314)
T KOG1444|consen 247 LCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQP 309 (314)
T ss_pred HHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence 999999999999999666666667777777889999999999999999999999876654433
No 5
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.97 E-value=8.9e-29 Score=226.02 Aligned_cols=287 Identities=14% Similarity=0.202 Sum_probs=213.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccc--cccCCCCc---chhHHHHHHH
Q 018956 8 QLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKL--FEHKPFDP---RAVMGFGVLN 82 (348)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~--~~~~~~~~---~~~~~~~~~~ 82 (348)
+.-..+++++-=+...++..+.|..++. +.+ |..+.++|+.++.+++.++.+.++ ++.++.++ ..+...+++.
T Consensus 11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~-G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g 88 (358)
T PLN00411 11 EAVFLTAMLATETSVVGISTLFKVATSK-GLN-IYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG 88 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHC-CCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence 4444556666667777778888998864 666 888999999999998887754332 22233334 3445556555
Q ss_pred HHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHh------hccccchhhHHHHHHHhhhhheeecc-cc--------
Q 018956 83 GISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLF------FRKKFSRNIQLSLVILLVGVGIATVT-DL-------- 147 (348)
Q Consensus 83 ~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~------l~e~~s~~~~~~~~l~~~G~~l~~~~-~~-------- 147 (348)
.++..+.+.+++|++++.+.++.++.|++++++++++ +|||.+++++.+++++++|+.++... +.
T Consensus 89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~ 168 (358)
T PLN00411 89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSP 168 (358)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccc
Confidence 5566688999999999999999999999999999999 69999999999999999999986531 10
Q ss_pred ---------------ccc-hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccc
Q 018956 148 ---------------QLN-VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNK 211 (348)
Q Consensus 148 ---------------~~~-~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 211 (348)
..+ ..|+.+.++++++||+|++++|+..++++ +.....+|++.++.+...+.....++...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~l~~~~~~~-- 245 (358)
T PLN00411 169 PYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP-AAFTVSFLYTVCVSIVTSMIGLVVEKNNP-- 245 (358)
T ss_pred ccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHhHHHHHHHHHHHHHHHHHHHHHccCCc--
Confidence 112 45999999999999999999999887542 33455666666666555544444432111
Q ss_pred cccccccCchhHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHH
Q 018956 212 NVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMV 291 (348)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~ 291 (348)
..+...++... ..+++.++++.+.+...++++++.+|..++++.+++|++++++|++++||++++.+++|.++++.|+.
T Consensus 246 ~~~~~~~~~~~-~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~ 324 (358)
T PLN00411 246 SVWIIHFDITL-ITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFY 324 (358)
T ss_pred ccceeccchHH-HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 11111222232 23444556665666677899999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccc
Q 018956 292 LYSYCCSLE 300 (348)
Q Consensus 292 l~~~~~~~~ 300 (348)
+.++.++++
T Consensus 325 l~~~~~~~~ 333 (358)
T PLN00411 325 AVMWGKANE 333 (358)
T ss_pred HHHhhhhhh
Confidence 987654433
No 6
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.97 E-value=1.2e-28 Score=220.57 Aligned_cols=270 Identities=19% Similarity=0.215 Sum_probs=221.3
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccc-----cCCCCcchhHHHHHHHHHHHhhhhhhhcccchhH
Q 018956 26 VICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFE-----HKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGF 100 (348)
Q Consensus 26 ~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~ 100 (348)
...+..+-+. +++.|.+.+++.++.-.++...+...|+.+ ..+.+|++++.+++++...+++.+.|++|++.+.
T Consensus 29 ~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS 107 (334)
T PF06027_consen 29 GTFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTS 107 (334)
T ss_pred HHHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhH
Confidence 3455555555 788899999999988777666554333221 2356788889999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeecccc---------ccchhHHHHHHHHHHHHHHHHHHH
Q 018956 101 YQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDL---------QLNVLGSVLSLLAVLTTCVAQIMT 171 (348)
Q Consensus 101 ~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~---------~~~~~G~~~~l~s~~~~a~~~v~~ 171 (348)
++++.++..+++++++++++|+|+++.|+.|++++++|+.+....|. +....|++++++++++||+++|+.
T Consensus 108 ~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~ 187 (334)
T PF06027_consen 108 VQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVLE 187 (334)
T ss_pred HHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998766431 234789999999999999999999
Q ss_pred HHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHHHHHhhhcccCcch
Q 018956 172 NTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVT 251 (348)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~ 251 (348)
|+..| +.+..+...+..+++.++..+...+.|... .....|+...+...+..+++-+..+......++..+|+.
T Consensus 188 E~~v~--~~~~~~~lg~~Glfg~ii~~iq~~ile~~~----i~~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~ 261 (334)
T PF06027_consen 188 EKLVK--KAPRVEFLGMLGLFGFIISGIQLAILERSG----IESIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATF 261 (334)
T ss_pred HHhcc--cCCHHHHHHHHHHHHHHHHHHHHHheehhh----hhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccce
Confidence 99998 457888999999999988877766665321 122344555566666666666666666677899999999
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcccccc
Q 018956 252 YQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQ 302 (348)
Q Consensus 252 ~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~~ 302 (348)
..+-.....+.++++++++||+++++..++|.+++++|.++|+..+.+.++
T Consensus 262 ~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 262 FNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred eehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 999888899999999999999999999999999999999999986654433
No 7
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.96 E-value=1.9e-27 Score=214.66 Aligned_cols=275 Identities=22% Similarity=0.282 Sum_probs=232.4
Q ss_pred HHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHccc-cccCCCCcchhHHHHHHHHHHHhhhhhhhcccchhHHH
Q 018956 25 IVICNKALISSLGFT-FATTLTSWHLLVTFCSLHVALWMKL-FEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQ 102 (348)
Q Consensus 25 ~~~~~k~~~~~~~f~-~p~~~~~~r~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~ 102 (348)
..++++.+.+..... +|+++++.|++...+...+.....+ .++++.+++++...++++.++..+.|.+++|+|.+..+
T Consensus 15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~ 94 (303)
T PF08449_consen 15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQI 94 (303)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 345666676653444 7999999999999998887765554 55667788899999999999999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccccc----c------chhHHHHHHHHHHHHHHHHHHHH
Q 018956 103 MTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQ----L------NVLGSVLSLLAVLTTCVAQIMTN 172 (348)
Q Consensus 103 ~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~----~------~~~G~~~~l~s~~~~a~~~v~~~ 172 (348)
+++++.|+++++++.+++|+|+++++++++++..+|+++....+.+ . ...|+++.+++.++.|++.+++|
T Consensus 95 ~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe 174 (303)
T PF08449_consen 95 VFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQE 174 (303)
T ss_pred HHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998764321 1 12399999999999999999999
Q ss_pred HHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhh-cccccccccccccCchhHHHHHHHHHHHHHHHHHHHhhhcccCcch
Q 018956 173 TIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLD-GLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVT 251 (348)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~ 251 (348)
|..++++.+++++++|...++.+..++...... ++......+ ...++..+..++..++++...+...+..+++.+|++
T Consensus 175 ~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f-~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~ 253 (303)
T PF08449_consen 175 KLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRF-ISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALT 253 (303)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 999999999999999999999988877666632 111111111 123445667777888888888888889999999999
Q ss_pred hhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcccc
Q 018956 252 YQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE 300 (348)
Q Consensus 252 ~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~ 300 (348)
.+++..++.++++++|+++||+++++.+|+|.++++.|..+|...++|+
T Consensus 254 ~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 254 TTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999999999887765
No 8
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.96 E-value=5.6e-27 Score=210.92 Aligned_cols=273 Identities=18% Similarity=0.085 Sum_probs=199.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHHHHHHHH
Q 018956 4 GQKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNG 83 (348)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (348)
+++..+....+.+.|.... ...|...+ ++| |..+.++|+.++.+++.++.. +.+.++.+++..+..++.+.
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~----~~~k~~~~--~~~-P~~~~~~R~~~a~l~l~~~~~--~~~~~~~~~~~~~~~~l~~~ 72 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMV----GLIRGVSE--SLG-PVGGAAMIYSVSGLLLLLTVG--FPRLRQFPKRYLLAGGLLFV 72 (295)
T ss_pred CcchhHHHHHHHHHHHHHH----HHHHHHHc--cCC-hHHHHHHHHHHHHHHHHHHcc--ccccccccHHHHHHHhHHHH
Confidence 3445555556666666554 46698887 566 999999999999988876532 11222223333344444566
Q ss_pred HHHhhhhhhhc----ccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeecccc-----------c
Q 018956 84 ISIGLLNLSLG----FNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDL-----------Q 148 (348)
Q Consensus 84 ~~~~~~~~al~----~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~-----------~ 148 (348)
.+..+.+.+++ +.++..+.++.++.|+++.+++++++|||++++++.+++++++|+.++..++. +
T Consensus 73 ~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~ 152 (295)
T PRK11689 73 SYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIA 152 (295)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccc
Confidence 66666776665 46777889999999999999999999999999999999999999999765432 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHH
Q 018956 149 LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVL 228 (348)
Q Consensus 149 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (348)
.+..|++++++++++||.|+++.||..+ +.++..... ..+.+.+.+.... ++.. . ...+...+..+.+
T Consensus 153 ~~~~G~~~~l~aa~~~A~~~v~~k~~~~--~~~~~~~~~---~~~~~~l~~~~~~-~~~~--~----~~~~~~~~~~l~~ 220 (295)
T PRK11689 153 SNPLSYGLAFIGAFIWAAYCNVTRKYAR--GKNGITLFF---ILTALALWIKYFL-SPQP--A----MVFSLPAIIKLLL 220 (295)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhhccC--CCCchhHHH---HHHHHHHHHHHHH-hcCc--c----ccCCHHHHHHHHH
Confidence 2356999999999999999999999876 345554322 2223333322222 2111 1 1122334444555
Q ss_pred HHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhc
Q 018956 229 SCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC 297 (348)
Q Consensus 229 ~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~ 297 (348)
.++.+...++.+++++|+.++..++.+.+++|+++++++++++||++++.+++|.++++.|+++....+
T Consensus 221 ~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 221 AAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 666676677888999999999999999999999999999999999999999999999999998876544
No 9
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.96 E-value=7.8e-26 Score=203.98 Aligned_cols=277 Identities=14% Similarity=0.161 Sum_probs=196.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHHHHHHH-HHHH
Q 018956 8 QLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLN-GISI 86 (348)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 86 (348)
.+...++.++|..... ..|...+ +++ |..+.++|+.++.+.+.++.+. ++.+++..+..+++. ....
T Consensus 6 ~l~~l~~~~~Wg~~~~----~~k~~~~--~~~-p~~~~~~R~~~a~~~l~~~~~~-----~~~~~~~~~~~g~~~~~~~~ 73 (299)
T PRK11453 6 GVLALLVVVVWGLNFV----VIKVGLH--NMP-PLMLAGLRFMLVAFPAIFFVAR-----PKVPLNLLLGYGLTISFGQF 73 (299)
T ss_pred HHHHHHHHHHHhhhHH----HHHHHHh--cCC-HHHHHHHHHHHHHHHHHHHhcC-----CCCchHHHHHHHHHHHHHHH
Confidence 4455566666666665 5587776 566 9999999999987766554321 122344444445533 3344
Q ss_pred hhhhhhhcc-cchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccc---cccchhHHHHHHHHHH
Q 018956 87 GLLNLSLGF-NSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD---LQLNVLGSVLSLLAVL 162 (348)
Q Consensus 87 ~~~~~al~~-~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~---~~~~~~G~~~~l~s~~ 162 (348)
.+.+.++++ .+++.+.++.++.|+++.+++++++|||++++++.+++++++|+.++..++ .+.+..|+.+++++++
T Consensus 74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal 153 (299)
T PRK11453 74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAF 153 (299)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHH
Confidence 566778887 688999999999999999999999999999999999999999999876532 2234579999999999
Q ss_pred HHHHHHHHHHHHhhhcC-CCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHH-HHHHH
Q 018956 163 TTCVAQIMTNTIQKKFK-VSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVS-VNFST 240 (348)
Q Consensus 163 ~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 240 (348)
+|+.+.++.||..++.+ .+......+.+..+.+.........+++....... ...+...+..+++.++++.. .+..+
T Consensus 154 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~i~~t~~~~~l~ 232 (299)
T PRK11453 154 SWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSL-VTIDMTTILSLMYLAFVATIVGYGIW 232 (299)
T ss_pred HHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh-ccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999865332 22233344444444333332222233221110000 11233345555555555554 44555
Q ss_pred HhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhc
Q 018956 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC 297 (348)
Q Consensus 241 ~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~ 297 (348)
++.+++.++.+.+.+.+++|+++.+++++++||++++.+++|.++++.|+.+..+.+
T Consensus 233 ~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 233 GTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 788999999999999999999999999999999999999999999999998876544
No 10
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.95 E-value=7.1e-26 Score=203.86 Aligned_cols=278 Identities=12% Similarity=0.086 Sum_probs=195.8
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHcccc-cc---CCCCcch--
Q 018956 1 MSEGQKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLF-EH---KPFDPRA-- 74 (348)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~-~~---~~~~~~~-- 74 (348)
|.++.++....+.+.++|..... ..|.. . +.+ |..+.++|++++.+++.++...++. +. +..+++.
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~----~~k~~-~--~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 74 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPA----YFKLI-Y--YVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF 74 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHH----HHHHh-c--CCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH
Confidence 44455556555566666655554 44764 4 455 9999999999998876665433211 11 1112332
Q ss_pred -hHHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccccccchhH
Q 018956 75 -VMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLG 153 (348)
Q Consensus 75 -~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~~~~G 153 (348)
....+++.+.+..+.+++++++|++.+.++.++.|+++++++++++|||+++++|.++++++.|+.+....+.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~---- 150 (296)
T PRK15430 75 MLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL---- 150 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc----
Confidence 223345677789999999999999999999999999999999999999999999999999999999976433222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHH
Q 018956 154 SVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLIS 233 (348)
Q Consensus 154 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (348)
..++++++++||.|.++.||..++...+......|..+.+.....+. .+.. ....... ....+..++..++.+
T Consensus 151 ~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~-~~~~~~~~~~~g~~t 223 (296)
T PRK15430 151 PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSS---TSHMGQN-PMSLNLLLIAAGIVT 223 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCC---cccccCC-cHHHHHHHHHHHHHH
Confidence 25688899999999999999754222233333344443333322111 1111 0001111 111234445455566
Q ss_pred HHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhc
Q 018956 234 VSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC 297 (348)
Q Consensus 234 ~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~ 297 (348)
...+...++++++.+|...+.+.+++|+++.+++++++||++++.+++|++++++|+.+.....
T Consensus 224 ~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 224 TVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888999999999999999999999999999999999999999999999999888876543
No 11
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.95 E-value=2.2e-25 Score=200.38 Aligned_cols=271 Identities=13% Similarity=0.081 Sum_probs=201.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccc-cCCCCcchhHHHHHH-HHHHHhhhhhh
Q 018956 15 LSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFE-HKPFDPRAVMGFGVL-NGISIGLLNLS 92 (348)
Q Consensus 15 ~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~a 92 (348)
.++-.+.+.......|...+ +.+ |..++++|+.++.+++.++...++.+ +++.++......|.+ ......+.+.+
T Consensus 13 ~~~~~~iWg~~~~~~K~~~~--~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 89 (292)
T PRK11272 13 LFALYIIWGSTYLVIRIGVE--SWP-PLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVTVA 89 (292)
T ss_pred HHHHHHHHhhHHHHHHHHhc--cCC-HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445567798877 555 99999999999998887765443322 223344555556654 34566777888
Q ss_pred h-cccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeecc-ccccchhHHHHHHHHHHHHHHHHHH
Q 018956 93 L-GFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT-DLQLNVLGSVLSLLAVLTTCVAQIM 170 (348)
Q Consensus 93 l-~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~-~~~~~~~G~~~~l~s~~~~a~~~v~ 170 (348)
. ++++++.+.++.++.|+++++++.+ +|||++++++.++.++++|+.+...+ +.+.+..|++++++++++||.+.++
T Consensus 90 ~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~ 168 (292)
T PRK11272 90 EHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVW 168 (292)
T ss_pred HHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 8 9999999999999999999999986 69999999999999999999987643 3345567999999999999999999
Q ss_pred HHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHH-HHHHHHHHHhhhcccCc
Q 018956 171 TNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI-SVSVNFSTFLVIGKTSP 249 (348)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~a 249 (348)
.||..++ ++.....+....+.+.+.+.....+... ....+...+..+++.+++ +...+..+++++++.++
T Consensus 169 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~ 239 (292)
T PRK11272 169 SSRLPLP---VGMMAGAAEMLAAGVVLLIASLLSGERL------TALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRP 239 (292)
T ss_pred HHhcCCC---cchHHHHHHHHHHHHHHHHHHHHcCCcc------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence 9997542 2344556666667666665544332111 011122334444444444 34456677899999999
Q ss_pred chhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcc
Q 018956 250 VTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS 298 (348)
Q Consensus 250 ~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~ 298 (348)
...+.+.+++|+++.+++++++||++|+.+++|.++++.|+.+.+..++
T Consensus 240 ~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 240 ALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999998765433
No 12
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.2e-29 Score=207.68 Aligned_cols=303 Identities=20% Similarity=0.231 Sum_probs=260.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCchHHHHHHHHHHHHHHHHHHHHHccc-----c--ccCCCC---cchh
Q 018956 8 QLGTVGALSLSVISSVSIVICNKALISS--LGFTFATTLTSWHLLVTFCSLHVALWMKL-----F--EHKPFD---PRAV 75 (348)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~--~~f~~p~~~~~~r~~~~~~~l~~~~~~~~-----~--~~~~~~---~~~~ 75 (348)
.-.+..+...+.+.++.+.+.||++++. ...+.|.+++++|+++...+++...+... . +.-+.+ .+..
T Consensus 26 ~~~v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~v 105 (347)
T KOG1442|consen 26 AKQVDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQV 105 (347)
T ss_pred hhchhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhh
Confidence 4445567778889999999999999986 56677999999999999999988755321 1 111222 2567
Q ss_pred HHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccc---cccchh
Q 018956 76 MGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD---LQLNVL 152 (348)
Q Consensus 76 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~---~~~~~~ 152 (348)
.++++.+.++..+.|..++|++++.+++-+++..+|+++++++++|+|-+..-..+.+++++|.-+-+..+ ...++.
T Consensus 106 lplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~ 185 (347)
T KOG1442|consen 106 LPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWI 185 (347)
T ss_pred cchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchh
Confidence 78899999999999999999999999999999999999999999999999999999999999999988766 456789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHH
Q 018956 153 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI 232 (348)
Q Consensus 153 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (348)
|.++++.++++-|+..+++||...+.+..-+.+.+|+...+.+..+|... ..++.+....++..+...+|.++.++|++
T Consensus 186 GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~-lnge~~~v~~~~~l~a~~Fw~~mtLsglf 264 (347)
T KOG1442|consen 186 GVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLI-LNGEFQAVVGFPHLPAIKFWILMTLSGLF 264 (347)
T ss_pred hhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHH-HcchHHHHcCcccchHHHHHHHHHHHHHH
Confidence 99999999999999999999988877788999999999999988777654 44444444445566678899999999999
Q ss_pred HHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcccccccccccccCC
Q 018956 233 SVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQ 311 (348)
Q Consensus 233 ~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~~~~~~~~~~~ 311 (348)
++..++...+-+|.++|++..+.+..+-...++++..+++|..+..-|-|-++++.|...|.+.|.++.+++.++++++
T Consensus 265 gF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~~~s~~ 343 (347)
T KOG1442|consen 265 GFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASAQRSPA 343 (347)
T ss_pred HHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhccCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999887777666555443
No 13
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.95 E-value=7.1e-26 Score=192.58 Aligned_cols=284 Identities=25% Similarity=0.363 Sum_probs=243.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHcccc-cc---CCCCcchh----HHHH
Q 018956 8 QLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLF-EH---KPFDPRAV----MGFG 79 (348)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~-~~---~~~~~~~~----~~~~ 79 (348)
+....+.+.+|+++++++.+.+|+.-. .|++|++++.+|+++-.++.....+..+. .+ ...+|+.. .+.+
T Consensus 14 rV~~L~lVl~yY~~Si~Ltf~~~~~~~--~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPta 91 (349)
T KOG1443|consen 14 RVLTLALVLLYYFLSIGLTFYFKWLTK--NFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTA 91 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhc--CcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhh
Confidence 555666678999999999999999888 58899999999999988877776554322 22 23456544 4778
Q ss_pred HHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccccccchhHHHHHHH
Q 018956 80 VLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLL 159 (348)
Q Consensus 80 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~ 159 (348)
++.++...+.|++++|++.+.+++.+++.++|+.+++.++--||+++.-...++++.+|+.+..+.+.+++..|.++.++
T Consensus 92 lata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~ 171 (349)
T KOG1443|consen 92 LATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLA 171 (349)
T ss_pred hhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcC---CCHHHHHHhhhHHHHHHHHHHHHHhhccccccc--ccccccC---chhHHHHHHHHH
Q 018956 160 AVLTTCVAQIMTNTIQKKFK---VSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKN--VFAFKYT---PYVLFFIVLSCL 231 (348)
Q Consensus 160 s~~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~ 231 (348)
++++.+++..+.|.++++.+ -+|.+..++.++...+.++|....+||+..... .+..... ...+..+..+|.
T Consensus 172 aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~ 251 (349)
T KOG1443|consen 172 ASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGL 251 (349)
T ss_pred HHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHH
Confidence 99999999999999987543 478999999999999999999999998755321 2222222 233455667778
Q ss_pred HHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHH
Q 018956 232 ISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLY 293 (348)
Q Consensus 232 ~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~ 293 (348)
.++.....-+..+.+++..+.++.+..+.+.+.+.+.++.+|.++..++.|..++..|+..+
T Consensus 252 laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 252 LAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 88888888899999999999999999999999999999999999999999999999999998
No 14
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.95 E-value=1.6e-25 Score=198.22 Aligned_cols=252 Identities=15% Similarity=0.086 Sum_probs=197.2
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHHHH-HHHHHHHhhhhhhhcccchhHHHHH
Q 018956 26 VICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFG-VLNGISIGLLNLSLGFNSVGFYQMT 104 (348)
Q Consensus 26 ~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~al~~~~~~~~~~l 104 (348)
....|+.+++ ...|..+.+.|++.+.+++.+....+ +++.++.+....+ ++..++..+.+.|++|++++.+.++
T Consensus 5 ~~~~k~~~~~--~~~~~~~~~~r~~~~~l~l~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii 79 (260)
T TIGR00950 5 GVVIGQYLEG--QVPLYFAVFRRLIFALLLLLPLLRRR---PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALL 79 (260)
T ss_pred HHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHhc---cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHH
Confidence 3467888873 33489999999999888877765443 3344555555555 4678888999999999999999999
Q ss_pred HhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccc-cccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHH
Q 018956 105 KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD-LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSST 183 (348)
Q Consensus 105 ~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~-~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~ 183 (348)
.++.|+++++++.+++|||++++++.++.++++|+.+....+ .+.+..|++++++++++|+.+.++.|+..++.+.++.
T Consensus 80 ~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~ 159 (260)
T TIGR00950 80 LYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELL 159 (260)
T ss_pred HhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHH
Confidence 999999999999999999999999999999999999976543 4456789999999999999999999999875544455
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHH-HHHHHHHHHhhhcccCcchhhhhhhhHHHH
Q 018956 184 QLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI-SVSVNFSTFLVIGKTSPVTYQVLGHLKTCL 262 (348)
Q Consensus 184 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~ 262 (348)
....+.+..+.+.+.+.....+... . .+...+..++..+++ +...+..+++++++.++...+.+.+++|++
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~ 231 (260)
T TIGR00950 160 QFTGWVLLLGALLLLPFAWFLGPNP----Q----ALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLV 231 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC----C----cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 5555666677766666544332111 1 122233334444444 445666778999999999999999999999
Q ss_pred HHHHHHHhcCCCCchhhhhhHHHHHHHH
Q 018956 263 VLAFGYVLLHDPFSWRNILGILIAVIGM 290 (348)
Q Consensus 263 ~~v~s~~~~~e~~t~~~~~G~~li~~g~ 290 (348)
+++++++++||++++.+++|.++++.|+
T Consensus 232 ~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 232 ALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999986
No 15
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.95 E-value=6e-25 Score=197.59 Aligned_cols=266 Identities=14% Similarity=0.093 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHHHHHHHHHHHhhhhh
Q 018956 12 VGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNL 91 (348)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (348)
+..+++-.+.........|+..+ +++ |..+.++|++++.+++.++.+.++.+.++++++..+..|++.+....+.++
T Consensus 14 ~~~~~la~~~~~~~~~~~K~~~~--~~~-~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 90 (293)
T PRK10532 14 ILLLLIAMASIQSGASLAKSLFP--LVG-APGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFYL 90 (293)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH--HcC-HHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344457899988 456 899999999999988877654333333445566666778777788888899
Q ss_pred hhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeecc--c-cccchhHHHHHHHHHHHHHHHH
Q 018956 92 SLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT--D-LQLNVLGSVLSLLAVLTTCVAQ 168 (348)
Q Consensus 92 al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~--~-~~~~~~G~~~~l~s~~~~a~~~ 168 (348)
+++++|++.+.++..+.|+++++++. ||+.. +.++.+++.|+.++... + .+.+..|++++++++++||.|.
T Consensus 91 al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~ 164 (293)
T PRK10532 91 SIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYI 164 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998763 55544 44567788998886532 1 2345679999999999999999
Q ss_pred HHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHH-HHHHHHHhhhccc
Q 018956 169 IMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISV-SVNFSTFLVIGKT 247 (348)
Q Consensus 169 v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~ 247 (348)
+..||..++ .++... .+....+.+.+.+.....++ . ..++...+..+++.++++. ..+..+++++++.
T Consensus 165 v~~r~~~~~--~~~~~~-~~~~~~~~~~l~~~~~~~~~----~----~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~ 233 (293)
T PRK10532 165 LSGQRAGAE--HGPATV-AIGSLIAALIFVPIGALQAG----E----ALWHWSILPLGLAVAILSTALPYSLEMIALTRL 233 (293)
T ss_pred HHHHHHhcc--CCchHH-HHHHHHHHHHHHHHHHHccC----c----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999763 455554 34455556555554433221 0 0122222333334444443 3455668999999
Q ss_pred CcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhc
Q 018956 248 SPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC 297 (348)
Q Consensus 248 ~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~ 297 (348)
++..++++.+++|+++.+++++++||++++.+++|.++++.|++.+.+..
T Consensus 234 ~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 234 PTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred ChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999987543
No 16
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.94 E-value=1.9e-25 Score=181.45 Aligned_cols=289 Identities=20% Similarity=0.251 Sum_probs=255.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHHHHHHHHHHHhhhhh
Q 018956 12 VGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNL 91 (348)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (348)
..+.+.|+.+++.+.+.||++++..+|+....+.+.|.+.+.+.+.+..+.+..+.+..+.+++++.+++...+.+....
T Consensus 8 ~~~~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK~WfpiSfLLv~MIyt~SK 87 (309)
T COG5070 8 LTASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFPISFLLVVMIYTSSK 87 (309)
T ss_pred chHHHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhhhhcCHHHHHHHHHHhccc
Confidence 35678899999999999999999999999999999999999998888877665565567778899999999999999999
Q ss_pred hhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccccccc-------hhHHHHHHHHHHHH
Q 018956 92 SLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLN-------VLGSVLSLLAVLTT 164 (348)
Q Consensus 92 al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~~-------~~G~~~~l~s~~~~ 164 (348)
+++|++++.+++++++..|.++....+++|.|.+..+..+.++.+.......++|.+.. ..|++|+...+++.
T Consensus 88 sLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~Nclss 167 (309)
T COG5070 88 SLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSS 167 (309)
T ss_pred ceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhH
Confidence 99999999999999999999999999999999999999999999999999998875321 35999999999999
Q ss_pred HHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHHHHHhhh
Q 018956 165 CVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVI 244 (348)
Q Consensus 165 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 244 (348)
+.+.+.+|+..|-.+....+.++|....+..+++.+....|+|.+..-.... .......+.++|+++++..+...|++
T Consensus 168 aafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl--~~d~l~am~ISgl~svgiSy~saWcv 245 (309)
T COG5070 168 AAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNL--SVDSLMAMFISGLCSVGISYCSAWCV 245 (309)
T ss_pred HHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCC--ChHHHHHHHHHHHHHhhhhhccceeE
Confidence 9999999998887788889999999999999999999999988665322222 23345678889999999999999999
Q ss_pred cccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcccccc
Q 018956 245 GKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQ 302 (348)
Q Consensus 245 ~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~~ 302 (348)
+.+++++.++++.++.....+.|.++|||+.+...+..+.+-..+.++|...+.++++
T Consensus 246 rVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q 303 (309)
T COG5070 246 RVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQ 303 (309)
T ss_pred eehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988765443
No 17
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.89 E-value=4.6e-21 Score=171.44 Aligned_cols=242 Identities=16% Similarity=0.108 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHHHHcc--cc--ccCCCCcchh-HHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHh
Q 018956 45 TSWHLLVTFCSLHVALWMK--LF--EHKPFDPRAV-MGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLF 119 (348)
Q Consensus 45 ~~~r~~~~~~~l~~~~~~~--~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~ 119 (348)
++++.....+++.++...+ .. +..+.+++.. ...++....+..+.+.++++.+++.+..+.++.|++++++++++
T Consensus 31 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~ 110 (281)
T TIGR03340 31 LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLT 110 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHH
Confidence 4666666666666554332 11 1112223333 33455677888899999999999999999999999999999999
Q ss_pred hccccchhhHHHHHHHhhhhheeeccc-cccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHH-HHHhhhHHHHHHH
Q 018956 120 FRKKFSRNIQLSLVILLVGVGIATVTD-LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQ-LLYQSCPYQALTL 197 (348)
Q Consensus 120 l~e~~s~~~~~~~~l~~~G~~l~~~~~-~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~l 197 (348)
+|||+++++|.++.+++.|+.+....+ .+.+..|+.++++++++|+.|.++.|+..+ +.++.. ...+. ..+.+..
T Consensus 111 ~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~i~~k~~~~--~~~~~~~~~~~~-~~~~~~~ 187 (281)
T TIGR03340 111 LGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYSLSDKAAAL--GVPAFYSALGYL-GIGFLAM 187 (281)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhhhcccccc--chhcccccHHHH-HHHHHHH
Confidence 999999999999999999999876533 234456888999999999999999887644 223221 11111 1222211
Q ss_pred -HHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCc
Q 018956 198 -FIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFS 276 (348)
Q Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t 276 (348)
.+.......... ... ...+...+..+...++.+...+..+++++++.++...+.+.+++|+++++++++++||+++
T Consensus 188 ~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~ 264 (281)
T TIGR03340 188 GWPFLLLYLKRHG--RSM-FPYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWY 264 (281)
T ss_pred HHHHHHHHHHHhc--cch-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCcc
Confidence 222221110000 000 0111223445566666666677778999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHH
Q 018956 277 WRNILGILIAVIGMVL 292 (348)
Q Consensus 277 ~~~~~G~~li~~g~~l 292 (348)
..+++|.+++++|+.+
T Consensus 265 ~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 265 LTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHhHHh
Confidence 9999999999999875
No 18
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.87 E-value=8.3e-20 Score=155.92 Aligned_cols=262 Identities=19% Similarity=0.164 Sum_probs=220.0
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHccc-cccCCCCcchhHHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHH
Q 018956 36 LGFTFATTLTSWHLLVTFCSLHVALWMKL-FEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTIL 114 (348)
Q Consensus 36 ~~f~~p~~~~~~r~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i 114 (348)
..|..|.++.+.|-+.+.++-..+...++ ....+.+|+++..+++...++..+.+.|++|++-+...+.+++-.+.+++
T Consensus 46 ~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVml 125 (327)
T KOG1581|consen 46 ERFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVML 125 (327)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHH
Confidence 46777999999999999999877655443 34456778899999999999999999999999999999999999999999
Q ss_pred HHHHhhccccchhhHHHHHHHhhhhheeeccc-c--------ccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHH
Q 018956 115 LETLFFRKKFSRNIQLSLVILLVGVGIATVTD-L--------QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQL 185 (348)
Q Consensus 115 ~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~-~--------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~ 185 (348)
...++.|+|++.+++++..++.+|+.+....+ . ..++.|+.+...+-+..++.+..++++.++++++++++
T Consensus 126 mg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~m 205 (327)
T KOG1581|consen 126 MGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHM 205 (327)
T ss_pred HHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHH
Confidence 99999999999999999999999999966531 1 24578999999999999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHH
Q 018956 186 LYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLA 265 (348)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v 265 (348)
+++..++.++...... +..+.....-.+ ...+++.+.=+...++++...+.+.+.-+++.|+.+.+.++..+.+++++
T Consensus 206 M~~vNLf~~i~~~~~l-i~qg~~~~av~F-~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~ 283 (327)
T KOG1581|consen 206 MFGVNLFSAILNGTYL-ILQGHLLPAVSF-IKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIM 283 (327)
T ss_pred HHHHHHHHHHHHHHhh-hcCCCCchHHHH-HHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHH
Confidence 9999999998876553 232222111111 22345566666667778888889999999999999999999999999999
Q ss_pred HHHHhcCCCCchhhhhhHHHHHHHHHHHhhhccc
Q 018956 266 FGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSL 299 (348)
Q Consensus 266 ~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~ 299 (348)
.+.++||++.++.||.|..+++.|+.+-...+.+
T Consensus 284 lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 284 LSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 9999999999999999999998888776555544
No 19
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.87 E-value=7.3e-20 Score=152.12 Aligned_cols=249 Identities=16% Similarity=0.148 Sum_probs=204.3
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHHHHHHHHHHHhhhhhhhcccchhHHHHHHhh
Q 018956 28 CNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLA 107 (348)
Q Consensus 28 ~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~ 107 (348)
..|.++...+ |.-.+++|..++.++++.+.+.++++..+.+|+.....|++.+.++.++|.+++.+|.+.+..+..+
T Consensus 30 ~Ak~LFP~vG---~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~ 106 (292)
T COG5006 30 FAKSLFPLVG---AAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFT 106 (292)
T ss_pred HHHHHccccC---hhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhc
Confidence 4577887444 8999999999999999999887777888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccc---cccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHH
Q 018956 108 IIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD---LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQ 184 (348)
Q Consensus 108 ~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~---~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~ 184 (348)
.|+.++.++. -+.++.+.+.+.+.|+.+....+ .+.|..|..+++.++.||+.|.+..||.-+ ..+..+
T Consensus 107 GPL~vA~~~s------Rr~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~--~~~g~~ 178 (292)
T COG5006 107 GPLAVALLSS------RRLRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAGR--AEHGTA 178 (292)
T ss_pred cHHHHHHHhc------cchhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcc--cCCCch
Confidence 9999887654 34556666777778877755433 567899999999999999999999999875 346666
Q ss_pred HHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHHHH-HhhhcccCcchhhhhhhhHHHHH
Q 018956 185 LLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFST-FLVIGKTSPVTYQVLGHLKTCLV 263 (348)
Q Consensus 185 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~a~~~~~~~~~~~v~~ 263 (348)
.+..-+..++++.+|+.....++ .-.++..+...+..++++....|.. -.++++.++.+++++..++|.++
T Consensus 179 g~a~gm~vAaviv~Pig~~~ag~--------~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~a 250 (292)
T COG5006 179 GVAVGMLVAALIVLPIGAAQAGP--------ALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALA 250 (292)
T ss_pred HHHHHHHHHHHHHhhhhhhhcch--------hhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHH
Confidence 66666677777777776533322 1234455666777777777777776 77899999999999999999999
Q ss_pred HHHHHHhcCCCCchhhhhhHHHHHHHHHHHhh
Q 018956 264 LAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 295 (348)
Q Consensus 264 ~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~ 295 (348)
.+.+++++||.+|+.||.|++.++.+..-..+
T Consensus 251 Al~G~i~L~e~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 251 ALSGLIFLGETLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999776554
No 20
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.87 E-value=1.2e-18 Score=156.62 Aligned_cols=263 Identities=17% Similarity=0.147 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHcccc-cc-CCCCcchhHH-HHHHHHHHHhhhhhhhccc
Q 018956 20 ISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLF-EH-KPFDPRAVMG-FGVLNGISIGLLNLSLGFN 96 (348)
Q Consensus 20 ~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~-~~-~~~~~~~~~~-~~~~~~~~~~~~~~al~~~ 96 (348)
..........|....+ ...+....+.|...+.+........++. +. .+.+++.... .++.......+.+.+++++
T Consensus 17 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (292)
T COG0697 17 LLWGLSFIALKLAVES--LDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYT 94 (292)
T ss_pred HHHHHHHHHHHHHhcc--cCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333334444555552 2336666667999888884444433322 11 1222223333 4557778888999999999
Q ss_pred chhHHHHHHhhHHHHHHHHHH-HhhccccchhhHHHHHHHhhhhheeeccccccc---hhHHHHHHHHHHHHHHHHHHHH
Q 018956 97 SVGFYQMTKLAIIPCTILLET-LFFRKKFSRNIQLSLVILLVGVGIATVTDLQLN---VLGSVLSLLAVLTTCVAQIMTN 172 (348)
Q Consensus 97 ~~~~~~~l~~~~pi~~~i~~~-l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~~---~~G~~~~l~s~~~~a~~~v~~~ 172 (348)
+++.++++.++.|+++.++++ +++|||++++++.++.+++.|+.+....+...+ ..|+.+++.++++++.+.++.|
T Consensus 95 ~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~~~~~ 174 (292)
T COG0697 95 SASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVK 174 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 777999999999999999999999988664433 5899999999999999999999
Q ss_pred HHhhhcCCCHHHHHH-hhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHH-HHHHHHHhhhcccCcc
Q 018956 173 TIQKKFKVSSTQLLY-QSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISV-SVNFSTFLVIGKTSPV 250 (348)
Q Consensus 173 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~a~ 250 (348)
+.. +.++..... +... ....+.......... .......+......++++. ..++..++.+++.++.
T Consensus 175 ~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~ 242 (292)
T COG0697 175 RLS---RLGPVTLALLLQLL--LALLLLLLFFLSGFG-------APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGAS 242 (292)
T ss_pred Hhc---CCChHHHHHHHHHH--HHHHHHHHHHhcccc-------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 987 234444444 2222 111111111111110 1222233445555555555 4677778999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018956 251 TYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 296 (348)
Q Consensus 251 ~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 296 (348)
..+...+++|+.+.+++++++||+++..+++|..+++.|+.+....
T Consensus 243 ~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 243 LVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999998764
No 21
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.87 E-value=1.3e-19 Score=160.01 Aligned_cols=243 Identities=13% Similarity=0.098 Sum_probs=166.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHc-ccc-----ccCCCCcc----hhH
Q 018956 7 FQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWM-KLF-----EHKPFDPR----AVM 76 (348)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~-~~~-----~~~~~~~~----~~~ 76 (348)
+....+++.++|...+. ..|. .. +.+ |..+.++|++++.+++.++... ++. +.++.+++ ...
T Consensus 3 g~~~~i~a~~~wg~~~~----~~k~-~~--~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYY----YSKL-LK--PLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLL 74 (256)
T ss_pred cHHHHHHHHHHHHHHHH----HHHH-hc--cCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHH
Confidence 45556666666666665 5576 34 455 9999999999998887665422 211 11111122 234
Q ss_pred HHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccccccchhHHHH
Q 018956 77 GFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVL 156 (348)
Q Consensus 77 ~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~ 156 (348)
..+++.+.+..+.++++++++++.++++.++.|+++++++++++|||++++++.+++++++|+.+...++.+.+ .+
T Consensus 75 ~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~ 150 (256)
T TIGR00688 75 LCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WE 150 (256)
T ss_pred HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HH
Confidence 45667788899999999999999999999999999999999999999999999999999999998754322211 46
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHH
Q 018956 157 SLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSV 236 (348)
Q Consensus 157 ~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (348)
+++++++|+.|.+..||..+ + +..+...+. ........+.. ...++.. ... ......|..++..++++...
T Consensus 151 ~l~aa~~~a~~~i~~~~~~~-~--~~~~~~~~~-~~~~~~~~~~~-~~~~~~~-~~~---~~~~~~~~~l~~~g~~t~i~ 221 (256)
T TIGR00688 151 ALVLAFSFTAYGLIRKALKN-T--DLAGFCLET-LSLMPVAIYYL-LQTDFAT-VQQ---TNPFPIWLLLVLAGLITGTP 221 (256)
T ss_pred HHHHHHHHHHHHHHHhhcCC-C--CcchHHHHH-HHHHHHHHHHH-HHhccCc-ccc---cCchhHHHHHHHHHHHHHHH
Confidence 78899999999999999754 2 222222111 11111111111 1111111 000 01111344555666677777
Q ss_pred HHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHh
Q 018956 237 NFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVL 270 (348)
Q Consensus 237 ~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~ 270 (348)
+.....++|+.++...+...+++|+++.+++.++
T Consensus 222 ~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 222 LLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 8888999999999999999999999999998764
No 22
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.86 E-value=8.4e-19 Score=154.00 Aligned_cols=286 Identities=19% Similarity=0.174 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCch-HHHHHHHHHHHHHHHHHHHHHccc---ccc--CC---------CCcch
Q 018956 10 GTVGALSLSVISSVSIVICNKALISSLGFTF-ATTLTSWHLLVTFCSLHVALWMKL---FEH--KP---------FDPRA 74 (348)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~-p~~~~~~r~~~~~~~l~~~~~~~~---~~~--~~---------~~~~~ 74 (348)
.....++...+...++.++.|+.-.+.++++ |.+..+.--++-.+++........ .++ +. .+..+
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 4455666677888888889999887655555 888887777777776666543321 011 11 12235
Q ss_pred hHHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeecc---c-----
Q 018956 75 VMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT---D----- 146 (348)
Q Consensus 75 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~---~----- 146 (348)
+.+.+++|.+++.+.+.++.+.+++++++..++..+.|+++++++++||.+++||.++++.+.|+.+.... +
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~ 174 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKS 174 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccC
Confidence 66678899999999999999999999999999999999999999999999999999999999999997621 1
Q ss_pred ---cccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhH
Q 018956 147 ---LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVL 223 (348)
Q Consensus 147 ---~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (348)
.+..+.|....+.++.+.++..+|.+|++|+.+.+-+..+.....++.+..+......++.......+-..++...|
T Consensus 175 ~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw 254 (345)
T KOG2234|consen 175 ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVW 254 (345)
T ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHH
Confidence 23347899999999999999999999999987888887777777788877766555555433322334455666777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhccc
Q 018956 224 FFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSL 299 (348)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~ 299 (348)
.+++..++.+ ......+|+.+-...+....+..+++.+.|+.++|.++|....+|..+++.++.+|...+.+
T Consensus 255 ~vVl~~a~gG----Llvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~ 326 (345)
T KOG2234|consen 255 LVVLLNAVGG----LLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR 326 (345)
T ss_pred HHHHHHhccc----hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence 7777777777 33445589999999999999999999999999999999999999999999999999954443
No 23
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.85 E-value=1.6e-19 Score=151.97 Aligned_cols=283 Identities=19% Similarity=0.258 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh-----cCCchHHHHHHHHHHHHHHHHHHHHHcccccc----------------CCCCcch
Q 018956 16 SLSVISSVSIVICNKALISS-----LGFTFATTLTSWHLLVTFCSLHVALWMKLFEH----------------KPFDPRA 74 (348)
Q Consensus 16 ~~~~~~~~~~~~~~k~~~~~-----~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~----------------~~~~~~~ 74 (348)
++....+..++++.||.=+. .+|+.|...+..-++--+.++..+...+.+.. ++.+...
T Consensus 9 ~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~l 88 (372)
T KOG3912|consen 9 LIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVL 88 (372)
T ss_pred hhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcce
Confidence 45567777888999998653 56888888885555544444444433322111 1223344
Q ss_pred hHHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccc--------
Q 018956 75 VMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD-------- 146 (348)
Q Consensus 75 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~-------- 146 (348)
+++.++|...+..+.+.++.+++++.+|+++....||+.+++.-+++++++.+||+++.....|++++...|
T Consensus 89 fl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~ 168 (372)
T KOG3912|consen 89 FLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPY 168 (372)
T ss_pred ecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCc
Confidence 566799999999999999999999999999999999999999999999999999999999999999976642
Q ss_pred --cccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhccccc------c-c---cc
Q 018956 147 --LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTN------K-N---VF 214 (348)
Q Consensus 147 --~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~-~---~~ 214 (348)
.+.-..|+.+.+++-+.-|.+.++.+|..++.+++|.+...|...++.+++-.+.......+.. + . .+
T Consensus 169 ~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~ 248 (372)
T KOG3912|consen 169 TDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDW 248 (372)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhH
Confidence 1233679999999999999999999999999999999999999999977765444333221111 0 0 00
Q ss_pred -----ccccCchhHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHH
Q 018956 215 -----AFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIG 289 (348)
Q Consensus 215 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g 289 (348)
.....+..........+....+|+......|..++++-.+...++..+..+++..+..|.++..|+.|..+.+.|
T Consensus 249 ~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~G 328 (372)
T KOG3912|consen 249 GDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMG 328 (372)
T ss_pred HHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011122222223333333344677778888999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcc
Q 018956 290 MVLYSYCCS 298 (348)
Q Consensus 290 ~~l~~~~~~ 298 (348)
+.+|+-.-.
T Consensus 329 i~lY~~il~ 337 (372)
T KOG3912|consen 329 IILYNQILF 337 (372)
T ss_pred HHHHHHHHh
Confidence 999986543
No 24
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.84 E-value=7.1e-20 Score=150.35 Aligned_cols=255 Identities=16% Similarity=0.230 Sum_probs=211.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHccc-cccCCCCcchhHHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHH
Q 018956 37 GFTFATTLTSWHLLVTFCSLHVALWMKL-FEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILL 115 (348)
Q Consensus 37 ~f~~p~~~~~~r~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~ 115 (348)
.|.+.+.+.++|+....++.-+....++ .+..+.+-+.+...++.|.+.+...|.|++|+|-+...+-++..||-++++
T Consensus 49 ~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMil 128 (337)
T KOG1580|consen 49 KFTFALALVFFQCTANTVFAKVLFLIRKKTEIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMIL 128 (337)
T ss_pred eehHHHHHHHHHHHHHHHHHHhheeecccccccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeee
Confidence 4778889999999998888766654433 344445556666778899999999999999999999999999999999999
Q ss_pred HHHhhccccchhhHHHHHHHhhhhheeecccc-------ccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHh
Q 018956 116 ETLFFRKKFSRNIQLSLVILLVGVGIATVTDL-------QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQ 188 (348)
Q Consensus 116 ~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~-------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~ 188 (348)
+.++.|+++.++++.+++++++|+++.-..+. .....|-++.+++--..++....++|+.+.+.....+++++
T Consensus 129 GVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~ 208 (337)
T KOG1580|consen 129 GVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFY 208 (337)
T ss_pred ehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHH
Confidence 99999999999999999999999999766421 22357999999999999999999999988777788899999
Q ss_pred hhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHH
Q 018956 189 SCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGY 268 (348)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~ 268 (348)
+.+++.+.+.....+ .|+......+ ..-.+..++-+...++.+.+.++..+..+...+|.+-+++...+..++++.|.
T Consensus 209 ~NlwStL~Lg~g~lf-TGElweF~yF-~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SV 286 (337)
T KOG1580|consen 209 TNLWSTLYLGAGLLF-TGELWEFFYF-VQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISV 286 (337)
T ss_pred HHHHHHHHhhhhhee-hhhHHHHHHH-HHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHH
Confidence 999999886654433 2222111111 22346667777778888888899999999999999999999999999999999
Q ss_pred HhcCCCCchhhhhhHHHHHHHHHHH
Q 018956 269 VLLHDPFSWRNILGILIAVIGMVLY 293 (348)
Q Consensus 269 ~~~~e~~t~~~~~G~~li~~g~~l~ 293 (348)
++|+++++.+||+|.++++.|...=
T Consensus 287 llf~npls~rQwlgtvlVF~aL~~D 311 (337)
T KOG1580|consen 287 LLFNNPLSGRQWLGTVLVFSALTAD 311 (337)
T ss_pred HHhcCcCcHHHHHHHHHHHHHhhhH
Confidence 9999999999999999999997653
No 25
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.84 E-value=6.2e-18 Score=144.53 Aligned_cols=278 Identities=17% Similarity=0.153 Sum_probs=211.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHc-ccc-c--cCCCCcc---hhHH
Q 018956 5 QKFQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWM-KLF-E--HKPFDPR---AVMG 77 (348)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~-~~~-~--~~~~~~~---~~~~ 77 (348)
+++.+..+.+-++|+..-. ..|.+-. .+ +..+.+.|.+-+..+....... |+. + .-.++++ .+..
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~----y~kll~~---~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l 77 (293)
T COG2962 6 RKGILLALLAYLLWGLLPL----YFKLLEP---LP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLAL 77 (293)
T ss_pred cchhHHHHHHHHHHHHHHH----HHHHHcc---CC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHH
Confidence 4567777777777776654 5565543 34 7889999999988877765432 211 1 1122233 3334
Q ss_pred HHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccccccchhHHHHH
Q 018956 78 FGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLS 157 (348)
Q Consensus 78 ~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~ 157 (348)
.++....+...+.||.++-.+-.+.+-....|++.++++++++|||+++.||++++++.+|+....+...+.++....++
T Consensus 78 ~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~la 157 (293)
T COG2962 78 TALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALALA 157 (293)
T ss_pred HHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 46677788888899999988778888888899999999999999999999999999999999999998888998777766
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHH
Q 018956 158 LLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVN 237 (348)
Q Consensus 158 l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (348)
++|++|...-|+. ++|+.+-.......-.+..+......+...+ +....+...+.+++..|+++..--
T Consensus 158 ----~sf~~Ygl~RK~~----~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~----~~~~~~~~~~~LLv~aG~vTavpL 225 (293)
T COG2962 158 ----LSFGLYGLLRKKL----KVDALTGLTLETLLLLPVALIYLLFLADSGQ----FLQQNANSLWLLLVLAGLVTAVPL 225 (293)
T ss_pred ----HHHHHHHHHHHhc----CCchHHhHHHHHHHHhHHHHHHHHHHhcCch----hhhcCCchHHHHHHHhhHHHHHHH
Confidence 8999999887666 6677777766655544444443333332211 122234556678888999998877
Q ss_pred HHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcccccc
Q 018956 238 FSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQ 302 (348)
Q Consensus 238 ~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~~ 302 (348)
.....+-|+.+=.+.+++.|++|....+++++++||+++..+.+..+.+.+|..+|....-++.+
T Consensus 226 ~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r 290 (293)
T COG2962 226 LLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTAR 290 (293)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77788899999999999999999999999999999999999999999999999999887654433
No 26
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.82 E-value=1.3e-18 Score=152.57 Aligned_cols=218 Identities=18% Similarity=0.159 Sum_probs=181.6
Q ss_pred HHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeecccc--------ccc
Q 018956 79 GVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDL--------QLN 150 (348)
Q Consensus 79 ~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~--------~~~ 150 (348)
+.+..+.++..|.|+.+++++..+++.+++-+|+.+++.++..||++..+.+++.+.++|+++...++. +..
T Consensus 166 c~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~ 245 (416)
T KOG2765|consen 166 CPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRP 245 (416)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccch
Confidence 334455777889999999999999999999999999999999999999999999999999999887632 234
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHH
Q 018956 151 VLGSVLSLLAVLTTCVAQIMTNTIQKKF--KVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVL 228 (348)
Q Consensus 151 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (348)
..|.++++++++.||.|.++.||...++ ++|......+..++..+++-|...+.+.. ..+.++.+....+..++..
T Consensus 246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~--~~e~F~lP~~~q~~~vv~~ 323 (416)
T KOG2765|consen 246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF--GEERFELPSSTQFSLVVFN 323 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh--ccCcccCCCCceeEeeeHh
Confidence 7899999999999999999999988765 56776677777777777776666555533 2223444444445556666
Q ss_pred HHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcc
Q 018956 229 SCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS 298 (348)
Q Consensus 229 ~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~ 298 (348)
+.+.+++.-|.+.++.-.++|+.+++-..++...+++.+.++-+.++|+.+++|.+.+++|.+..++...
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 7777788899999999999999999999999999999999999999999999999999999999876543
No 27
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.82 E-value=1e-18 Score=146.44 Aligned_cols=292 Identities=16% Similarity=0.142 Sum_probs=238.5
Q ss_pred cchhHHHHHH-HHHHHHHHHHHHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHHHHHHH
Q 018956 5 QKFQLGTVGA-LSLSVISSVSIVICNKALISSLGFT-FATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLN 82 (348)
Q Consensus 5 ~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~~~~~f~-~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (348)
+++++.+-+. .....+..+..-.+..++++..+|+ +.|.+|+.|+++-..+..+......-+++..+||.+..++.+.
T Consensus 37 ~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~la~~t 116 (367)
T KOG1582|consen 37 DKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVILAFLT 116 (367)
T ss_pred cCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccceecchhHhhhhHhhh
Confidence 3444444432 2344555666777889999998998 7999999999987776666554444455667899999999999
Q ss_pred HHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccc----cccchhHHHHHH
Q 018956 83 GISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD----LQLNVLGSVLSL 158 (348)
Q Consensus 83 ~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~----~~~~~~G~~~~l 158 (348)
...+.+.+-++.|++-+...+++++..+-+++.+.++-+.|+...++.+..+..+|+++....| .+++..|+++.-
T Consensus 117 ~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIs 196 (367)
T KOG1582|consen 117 VGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMIS 196 (367)
T ss_pred hhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987654 467889999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHH
Q 018956 159 LAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNF 238 (348)
Q Consensus 159 ~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (348)
.+-++.|+-..++++.+++++-+..++++|....+.+.++..... .++..+...+-.++........++-...+++...
T Consensus 197 gALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvl-Tge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~ 275 (367)
T KOG1582|consen 197 GALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVL-TGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIV 275 (367)
T ss_pred HHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHh-cccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHH
Confidence 999999999999999999888888999999988888877654433 3333322223333444456666666777777677
Q ss_pred HHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhc
Q 018956 239 STFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC 297 (348)
Q Consensus 239 ~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~ 297 (348)
.....++..+|..++.+...+..+++++|+++|..++|....-|..+++.|+.+-.+.+
T Consensus 276 ~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 276 FVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 77788999999999999999999999999999999999999999999999999876665
No 28
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.81 E-value=1.1e-20 Score=157.93 Aligned_cols=274 Identities=14% Similarity=0.112 Sum_probs=207.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHcccccc-CCCCcc-hhHHHHHHHHH
Q 018956 7 FQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEH-KPFDPR-AVMGFGVLNGI 84 (348)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~ 84 (348)
.+....+..+- .+++.++.+..|.+-. + |..+.-.|++.-.++..++...++... .+...| .+++-|+....
T Consensus 36 p~~gl~l~~vs-~ff~~~~vv~t~~~e~----~-p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~t 109 (346)
T KOG4510|consen 36 PNLGLLLLTVS-YFFNSCMVVSTKVLEN----D-PMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFT 109 (346)
T ss_pred CccCceehhhH-HHHhhHHHhhhhhhcc----C-hhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhh
Confidence 33444444444 5666666666554443 2 788888886666666555544332221 233333 44455777777
Q ss_pred HHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccc--------------cccc
Q 018956 85 SIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD--------------LQLN 150 (348)
Q Consensus 85 ~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~--------------~~~~ 150 (348)
+..+.+++++|.+.+.+.++..++|.++.+++++++|||+++.+.++..+.+.|++++.... .+.+
T Consensus 110 gvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~ 189 (346)
T KOG4510|consen 110 GVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYD 189 (346)
T ss_pred HHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccccccccccc
Confidence 78888999999999999999999999999999999999999999999999999999987621 1234
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHH
Q 018956 151 VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSC 230 (348)
Q Consensus 151 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (348)
..|.+.++.+++.-|.-.++.|++-| +.+..-.+.|....+.+..++...... .+..++...-+++++..|
T Consensus 190 ~~gt~aai~s~lf~asvyIilR~iGk--~~h~~msvsyf~~i~lV~s~I~~~~ig-------~~~lP~cgkdr~l~~~lG 260 (346)
T KOG4510|consen 190 IPGTVAAISSVLFGASVYIILRYIGK--NAHAIMSVSYFSLITLVVSLIGCASIG-------AVQLPHCGKDRWLFVNLG 260 (346)
T ss_pred CCchHHHHHhHhhhhhHHHHHHHhhc--cccEEEEehHHHHHHHHHHHHHHhhcc-------ceecCccccceEEEEEeh
Confidence 56888888888888888888898877 567766677776666666554433222 233344444566778889
Q ss_pred HHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhh
Q 018956 231 LISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 295 (348)
Q Consensus 231 ~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~ 295 (348)
++++..+......+++-.|...++..+...+++.++..++|||.+|++.|.|.++++.+.++...
T Consensus 261 vfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~ 325 (346)
T KOG4510|consen 261 VFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVAL 325 (346)
T ss_pred hhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888887766543
No 29
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.81 E-value=1.4e-18 Score=150.75 Aligned_cols=212 Identities=20% Similarity=0.217 Sum_probs=173.5
Q ss_pred CCcchhHHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeecccc--
Q 018956 70 FDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDL-- 147 (348)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~-- 147 (348)
++..++.+.+++|.+++.+.+.++++++++.+++++++..+++++++++++|+|++++||.++.+.+.|+.+....+.
T Consensus 15 ~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 15 KDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 344567778899999999999999999999999999999999999999999999999999999999999999765221
Q ss_pred ---------------ccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhccccccc
Q 018956 148 ---------------QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKN 212 (348)
Q Consensus 148 ---------------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 212 (348)
+....|+++.++++++.++..|+.||.+|+.+.+.+....+...++.+..++.....++....+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~ 174 (244)
T PF04142_consen 95 SDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISES 174 (244)
T ss_pred cccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccC
Confidence 11358999999999999999999999999888888888888888888777666554443322222
Q ss_pred ccccccCchhHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHH
Q 018956 213 VFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILI 285 (348)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~l 285 (348)
.+-..++...|..+...++.+ ......+|+.+...-+....+..+++.+.++.+||.++|....+|..+
T Consensus 175 g~f~G~~~~~~~~i~~~a~gG----llva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 175 GFFHGYSWWVWIVIFLQAIGG----LLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred CchhhcchHHHHHHHHHHHhh----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 233344555555566566555 344556899999999999999999999999999999999999999765
No 30
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.79 E-value=6.8e-17 Score=144.69 Aligned_cols=261 Identities=15% Similarity=0.118 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHH----HHHHHH
Q 018956 8 QLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMG----FGVLNG 83 (348)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 83 (348)
.+...++.+.|...++. .|.+. +++.++.+ |+.++.+++..+....+.+ +.+.+..+. .|+...
T Consensus 3 ~l~~lia~~~wGs~g~~----~k~~~---g~~~~~~~---~~~~g~l~~~~~~~~~~~~--~~~~~~~~~~g~l~G~~w~ 70 (290)
T TIGR00776 3 ILIALIPALFWGSFVLI----NVKIG---GGPYSQTL---GTTFGALILSIAIAIFVLP--EFWALSIFLVGLLSGAFWA 70 (290)
T ss_pred hHHHHHHHHHHhhhHHH----HhccC---CCHHHHHH---HHHHHHHHHHHHHHHHhCC--cccccHHHHHHHHHHHHHH
Confidence 34556677777777764 35444 45544443 6777777766654332221 122233333 345577
Q ss_pred HHHhhhhhhhcccchhHHHHHHh-hHHHHHHHHHHHhhccccchhh----HHHHHHHhhhhheeeccccc-------cc-
Q 018956 84 ISIGLLNLSLGFNSVGFYQMTKL-AIIPCTILLETLFFRKKFSRNI----QLSLVILLVGVGIATVTDLQ-------LN- 150 (348)
Q Consensus 84 ~~~~~~~~al~~~~~~~~~~l~~-~~pi~~~i~~~l~l~e~~s~~~----~~~~~l~~~G~~l~~~~~~~-------~~- 150 (348)
..+.+.+.+.++++++.+..+.+ ..+++..+.+.+++|||.++++ ..+++++++|+.+....+.+ .+
T Consensus 71 ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~ 150 (290)
T TIGR00776 71 LGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNF 150 (290)
T ss_pred hhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccch
Confidence 77799999999999999988888 8888999999999999999999 99999999999997653211 33
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhH---HHHHHHHHHHHHhhcccccccccccccCchhHHHHH
Q 018956 151 VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCP---YQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIV 227 (348)
Q Consensus 151 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (348)
..|++++++++++|+.|.+..|+. +.++.+..+.+.. .+.+...+.. .+ . ... ..... +...
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~--~~----~-~~~---~~~~~-~~~~ 215 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF----GVDGLSVLLPQAIGMVIGGIIFNLGH--IL----A-KPL---KKYAI-LLNI 215 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc----CCCcceehhHHHHHHHHHHHHHHHHH--hc----c-cch---HHHHH-HHHH
Confidence 679999999999999999999976 3577777444332 2332222111 00 0 001 11222 3334
Q ss_pred HHHHHHHHHHHHHHhhhc-ccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhh----hhHHHHHHHHHHHhh
Q 018956 228 LSCLISVSVNFSTFLVIG-KTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNI----LGILIAVIGMVLYSY 295 (348)
Q Consensus 228 ~~~~~~~~~~~~~~~~i~-~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~----~G~~li~~g~~l~~~ 295 (348)
..|++....+..++...+ +.++...+++..++|+.+++.+++++||+.++.++ +|.++++.|+.+...
T Consensus 216 ~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 216 LPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 477777666777778888 99999999999999999999999999999999999 999999999988654
No 31
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.79 E-value=2.2e-18 Score=144.93 Aligned_cols=272 Identities=15% Similarity=0.201 Sum_probs=208.6
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHHHHHHHHHHHhhhhhhhcc-cchhHHHHHH
Q 018956 27 ICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGF-NSVGFYQMTK 105 (348)
Q Consensus 27 ~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~~l~ 105 (348)
..-..+.+. +-..-..+|+.|+++-..-.++....-...+++.+.+.+...-..+...+.++|+++++ +|.+.-.+++
T Consensus 20 v~lE~L~~~-~pgsgNLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfR 98 (330)
T KOG1583|consen 20 VFLELLVRN-EPGSGNLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFR 98 (330)
T ss_pred HHHHHHHHh-CCCCeeehHHHHHHHHHHhceeeeccccccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEe
Confidence 344555553 33346788999988876655554321122235677787877777777888999999988 9999999999
Q ss_pred hhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeecc---cc---------c---cc----hhHHHHHHHHHHHHHH
Q 018956 106 LAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT---DL---------Q---LN----VLGSVLSLLAVLTTCV 166 (348)
Q Consensus 106 ~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~---~~---------~---~~----~~G~~~~l~s~~~~a~ 166 (348)
+..++.++++++++.|+|++.+|+.+++++.+|++++... |. + .+ ..|+.+...+.+..|.
T Consensus 99 sgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~ 178 (330)
T KOG1583|consen 99 SGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAY 178 (330)
T ss_pred cCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997652 11 0 01 3689999999999999
Q ss_pred HHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHH-HHhhcc---cccc----cccccccCchhHHHHHHHHHHHHHHHH
Q 018956 167 AQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIG-PFLDGL---LTNK----NVFAFKYTPYVLFFIVLSCLISVSVNF 238 (348)
Q Consensus 167 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (348)
..+++|+..++++-++-+.++|.........+... .+...+ ...+ ...... -+..|+.++++++..+...-
T Consensus 179 mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~-vP~~~~yLl~n~L~Qy~Cik 257 (330)
T KOG1583|consen 179 MGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFK-VPSMWVYLLFNVLTQYFCIK 257 (330)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCcc-ccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987776544332 111111 0010 111112 35566777777777766655
Q ss_pred HHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcccc
Q 018956 239 STFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE 300 (348)
Q Consensus 239 ~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~ 300 (348)
..+..-.++++++.+++-.++..++.++|.+.|+++++++.|+|..+++.|.++|.....+.
T Consensus 258 gVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~ 319 (330)
T KOG1583|consen 258 GVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHP 319 (330)
T ss_pred hhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 55777788999999999999999999999999999999999999999999999998765543
No 32
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.74 E-value=1.4e-18 Score=144.55 Aligned_cols=260 Identities=14% Similarity=0.158 Sum_probs=204.4
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHHHHHHHHHHHhhhhhhhcccchhHHHHH
Q 018956 25 IVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMT 104 (348)
Q Consensus 25 ~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l 104 (348)
..+.+.++-.. +.+.|...++..+..-.++..++...|+ +.-+..|++++++++...=.+++...|.||++....+.+
T Consensus 33 ~a~tss~la~k-~iN~Pt~QtFl~Y~LLalVY~~~~~fR~-~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lL 110 (336)
T KOG2766|consen 33 TAFTSSELARK-GINAPTSQTFLNYVLLALVYGPIMLFRR-KYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLL 110 (336)
T ss_pred chhhhHHHHhc-cCCCccHHHHHHHHHHHHHHhhHHHhhh-HHHHHHHHHhhheeEEeecccEEEeeehhhcchHHHHHH
Confidence 45666766664 4677999998888887777776655443 333456777888888888888888999999999999999
Q ss_pred HhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccc--------cccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 018956 105 KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD--------LQLNVLGSVLSLLAVLTTCVAQIMTNTIQK 176 (348)
Q Consensus 105 ~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~--------~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~ 176 (348)
.+...+.+.+++|+++|.|+.+.++.|++++++|+.+++..| .+....|+++.++++-+||..++..+.+.|
T Consensus 111 Dcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvk 190 (336)
T KOG2766|consen 111 DCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVK 190 (336)
T ss_pred HHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHHHh
Confidence 999999999999999999999999999999999999987744 234468999999999999999999999999
Q ss_pred hcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhh
Q 018956 177 KFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLG 256 (348)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~ 256 (348)
+.|..+++....++++++..+= ++.+... .....|+... ...+...++-+..+...-..+|..+++...+--
T Consensus 191 --n~d~~elm~~lgLfGaIIsaIQ-~i~~~~~----~~tl~w~~~i-~~yl~f~L~MFllYsl~pil~k~~~aT~~nlsl 262 (336)
T KOG2766|consen 191 --NADRVELMGFLGLFGAIISAIQ-FIFERHH----VSTLHWDSAI-FLYLRFALTMFLLYSLAPILIKTNSATMFNLSL 262 (336)
T ss_pred --cCcHHHHHHHHHHHHHHHHHHH-Hhhhccc----eeeEeehHHH-HHHHHHHHHHHHHHHhhHHheecCCceEEEhhH
Confidence 7899999999999999887654 3343221 1223333222 222223334444444446778999999999888
Q ss_pred hhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018956 257 HLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 296 (348)
Q Consensus 257 ~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 296 (348)
.....+++++ ..||-+.+|...+..+.+..|.++|..+
T Consensus 263 LTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~r 300 (336)
T KOG2766|consen 263 LTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTR 300 (336)
T ss_pred hHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence 8889999998 6778889999999999999999999543
No 33
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.71 E-value=2e-16 Score=128.44 Aligned_cols=143 Identities=31% Similarity=0.574 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-----cCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccc-----cCchh
Q 018956 153 GSVLSLLAVLTTCVAQIMTNTIQKK-----FKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFK-----YTPYV 222 (348)
Q Consensus 153 G~~~~l~s~~~~a~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~ 222 (348)
|.++++.++++.|+++++.|+..++ ++.++.++++|+.+.+.+.+++..+..|++.......... .....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 7899999999999999999999987 5899999999999999999999988888765333222111 14567
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhh
Q 018956 223 LFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 295 (348)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~ 295 (348)
+..++..|++++..++..+.++++++|++.++.+.+|.+..++.|+++|||++|+.+++|+++.+.|+++|++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999874
No 34
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.37 E-value=5.4e-12 Score=108.93 Aligned_cols=194 Identities=19% Similarity=0.107 Sum_probs=127.4
Q ss_pred cchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeec--------------------ccc-------c
Q 018956 96 NSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV--------------------TDL-------Q 148 (348)
Q Consensus 96 ~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~--------------------~~~-------~ 148 (348)
++.+.....++..++++++......++|++..|+++.++...|++.... ++. +
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 3556677777888888888888888888778888888887777764221 111 2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHH
Q 018956 149 LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVL 228 (348)
Q Consensus 149 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (348)
....|....+.+.++.++..+++++..|+++...+........++.+.........+........+...++...+..++
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 160 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGL- 160 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHH-
Confidence 3467888888899999999999999877554433333333333333321111111111111111111122222333333
Q ss_pred HHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHH
Q 018956 229 SCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLY 293 (348)
Q Consensus 229 ~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~ 293 (348)
....+ .....+.+|+.++...++...++++++.++|+++|||+++..++.|..+++.|+.+|
T Consensus 161 ~~a~~---~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 161 LNVGG---GLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHhc---CceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 22222 355678899999999999999999999999999999999999999999999997765
No 35
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.23 E-value=1.3e-10 Score=87.19 Aligned_cols=135 Identities=19% Similarity=0.205 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHH
Q 018956 153 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI 232 (348)
Q Consensus 153 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (348)
..++++++++++++..++.|--.+ ++||...+.........++.........+.... ..++..|..++++|+.
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~--~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~-----~~~~k~~lflilSGla 76 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLE--GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGG-----EIGPKSWLFLILSGLA 76 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHHHHHHHHhcCceeccc-----ccCcceehhhhHHHHH
Confidence 468899999999999999999888 677777777666666665555444433222211 1344556788889999
Q ss_pred HHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHh
Q 018956 233 SVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 294 (348)
Q Consensus 233 ~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~ 294 (348)
+....+.+|++++...+.....+.-..+++++++|+++++|++|..+++|++++.+|.++..
T Consensus 77 ~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 77 GGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 99999999999999999999999999999999999999999999999999999999987643
No 36
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.14 E-value=3.9e-10 Score=87.85 Aligned_cols=124 Identities=20% Similarity=0.377 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHH-HHHHHHHH
Q 018956 162 LTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI-SVSVNFST 240 (348)
Q Consensus 162 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 240 (348)
++||.+.++.|+..+ +.|+.....+....+.+ +++.....+... . ...+...+......+++ ....+...
T Consensus 1 ~~~a~~~~~~k~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLK--KISPLSITFWRFLIAGI-LLILLLILGRKP--F----KNLSPRQWLWLLFLGLLGTALAYLLY 71 (126)
T ss_pred ceeeeHHHHHHHHhc--cCCHHHHHHHHHHHHHH-HHHHHHhhcccc--c----cCCChhhhhhhhHhhccceehHHHHH
Confidence 468999999999988 47999999999998887 555555544322 0 11112222333333434 56667778
Q ss_pred HhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHh
Q 018956 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 294 (348)
Q Consensus 241 ~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~ 294 (348)
+.++++.++...+.+..++|+++.++++++++|++++.+++|.++++.|+++..
T Consensus 72 ~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 72 FYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998754
No 37
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.11 E-value=3.3e-10 Score=88.24 Aligned_cols=114 Identities=17% Similarity=0.263 Sum_probs=90.6
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHc-cc---cccCCCCcchhHHHHHH-HHHHHhhhhhhhcccchh
Q 018956 25 IVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWM-KL---FEHKPFDPRAVMGFGVL-NGISIGLLNLSLGFNSVG 99 (348)
Q Consensus 25 ~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~-~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~ 99 (348)
....+|...+ ++| |...+++|+..+.+ +.++... ++ .+.++.++......+++ ..++..+.+.++++++++
T Consensus 6 ~~~~~k~~~~--~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 81 (126)
T PF00892_consen 6 YSVFSKKLLK--KIS-PLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISAS 81 (126)
T ss_pred HHHHHHHHhc--cCC-HHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchh
Confidence 3457788887 455 89999999999997 4443322 21 22233344455555655 578889999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhhee
Q 018956 100 FYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIA 142 (348)
Q Consensus 100 ~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~ 142 (348)
.++++.++.|+++.+++++++||+++++++.++.++++|+.+.
T Consensus 82 ~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 82 IVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999875
No 38
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.11 E-value=1.6e-08 Score=87.80 Aligned_cols=205 Identities=19% Similarity=0.187 Sum_probs=150.2
Q ss_pred hhHHHHHHHHHHHhhhhhhhcccchhHHHHHH-hhHHHHHHHHHHHhhccccchhhHH----HHHHHhhhhheeeccccc
Q 018956 74 AVMGFGVLNGISIGLLNLSLGFNSVGFYQMTK-LAIIPCTILLETLFFRKKFSRNIQL----SLVILLVGVGIATVTDLQ 148 (348)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~pi~~~i~~~l~l~e~~s~~~~~----~~~l~~~G~~l~~~~~~~ 148 (348)
.-+..|++..++...++.+++++.++.+.=+. ..+-+.+.+.+++++||..+..++. +++++++|+.+.+..|.+
T Consensus 47 ~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~ 126 (269)
T PF06800_consen 47 VAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKK 126 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccccc
Confidence 33445788899999999999998887754444 4566778899999999999877765 788889999998775422
Q ss_pred --------cchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCc
Q 018956 149 --------LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTP 220 (348)
Q Consensus 149 --------~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 220 (348)
....|+...+++.+.|..|.+..|.. +.|+++..+=++.-..+..+.+..... .... +.
T Consensus 127 ~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~----~~~~~~~~lPqaiGm~i~a~i~~~~~~-----~~~~----~k 193 (269)
T PF06800_consen 127 SDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF----HVSGWSAFLPQAIGMLIGAFIFNLFSK-----KPFF----EK 193 (269)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHhc----CCChhHhHHHHHHHHHHHHHHHhhccc-----cccc----cc
Confidence 12469999999999999999997774 668887776443322222222222111 0011 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchh----hhhhHHHHHHHHHH
Q 018956 221 YVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWR----NILGILIAVIGMVL 292 (348)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~----~~~G~~li~~g~~l 292 (348)
..+.-+..|++-...+..++...++.+....-.++-+..+++.+.+.+++||+-+.. .++|.+++++|.++
T Consensus 194 -~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 194 -KSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred -chHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 124456677777788888888899999999999999999999999999999987765 55688888887654
No 39
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.09 E-value=1.5e-09 Score=87.58 Aligned_cols=215 Identities=13% Similarity=0.057 Sum_probs=158.1
Q ss_pred HHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccc--cccchhHH
Q 018956 77 GFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD--LQLNVLGS 154 (348)
Q Consensus 77 ~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~--~~~~~~G~ 154 (348)
+.+++....++.+..+++.++++.++.+.....-|+.+++++.+|+|+...++++..+++.|++++.+.| ....+.|+
T Consensus 58 PF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi 137 (290)
T KOG4314|consen 58 PFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGI 137 (290)
T ss_pred ceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhH
Confidence 3455666777888899999999999999999999999999999999999999999999999999988643 56679999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHH----H-HhhcccccccccccccCchhHHHHHHH
Q 018956 155 VLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIG----P-FLDGLLTNKNVFAFKYTPYVLFFIVLS 229 (348)
Q Consensus 155 ~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (348)
.+++.++...|+|-|.-|+.... .+--+...+++..+..-+.... . .+.+ .+..+.+...+ |..+...
T Consensus 138 ~~AV~SA~~aAlYKV~FK~~iGn--An~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~-VE~~qsFA~~P----WG~l~G~ 210 (290)
T KOG4314|consen 138 ACAVGSAFMAALYKVLFKMFIGN--ANFGDAAHFMSCLGFFNLCFISFPALILAFTG-VEHLQSFAAAP----WGCLCGA 210 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--CcchhHHHHHHHHHHHHHHHHhhhHHHHHHhc-hHHHHHHhhCC----chhhhhH
Confidence 99999999999999999998873 3333444444444444332211 1 1111 11111111122 2344444
Q ss_pred HHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcc
Q 018956 230 CLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS 298 (348)
Q Consensus 230 ~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~ 298 (348)
.......++.....+....|...++-..........++.++-+-.++.....|..++++|.++.-....
T Consensus 211 A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d 279 (290)
T KOG4314|consen 211 AGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPED 279 (290)
T ss_pred HHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccc
Confidence 555556677777777888888888777777777888887655558889999999999999988765443
No 40
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.07 E-value=9.3e-10 Score=84.31 Aligned_cols=102 Identities=20% Similarity=0.241 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHccc-c-----ccCCCCcchhHHHHHHHH-HHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHH
Q 018956 46 SWHLLVTFCSLHVALWMKL-F-----EHKPFDPRAVMGFGVLNG-ISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETL 118 (348)
Q Consensus 46 ~~r~~~~~~~l~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l 118 (348)
++|+..+.+++..+...++ . ..++.++..++..+++.. .+..+.++|+++.+ +....+.++.|+++++++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 4788888888877654322 1 122344555556676554 88899999999999 58889999999999999999
Q ss_pred hhccccchhhHHHHHHHhhhhheeeccccc
Q 018956 119 FFRKKFSRNIQLSLVILLVGVGIATVTDLQ 148 (348)
Q Consensus 119 ~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~ 148 (348)
++|||++++++.+++++++|++++.+++.+
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999998887643
No 41
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.98 E-value=8.9e-09 Score=77.37 Aligned_cols=117 Identities=17% Similarity=0.191 Sum_probs=95.7
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHc-ccccc----CCCCcchhHHHHHHHHHHHhhhhhhhcccchh
Q 018956 25 IVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWM-KLFEH----KPFDPRAVMGFGVLNGISIGLLNLSLGFNSVG 99 (348)
Q Consensus 25 ~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~ 99 (348)
..+..|.-.+ +.+ |.+.+..|.++..+++..+... ++.+. .++.|.-+..-|+..+++..+++.|++...++
T Consensus 18 ~~iF~KIGl~--~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk~G~as 94 (140)
T COG2510 18 TPIFAKIGLE--GVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALKKGKAS 94 (140)
T ss_pred HHHHHHHhcc--ccC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3567788887 445 9999999999998888876543 33322 23344444555778889999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeec
Q 018956 100 FYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV 144 (348)
Q Consensus 100 ~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~ 144 (348)
...-+..+.|+++++++++++|||+|..+|++++++.+|.++.+.
T Consensus 95 ~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 95 RVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred eEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 999999999999999999999999999999999999999998753
No 42
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.91 E-value=3e-08 Score=87.48 Aligned_cols=140 Identities=14% Similarity=0.146 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHH
Q 018956 152 LGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCL 231 (348)
Q Consensus 152 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (348)
.|..+.++++++|+...+..|. .. +.++.++.++...++.+.+++.......................+......++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~--~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LK--PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hc--cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence 4889999999999999999997 34 58999999999998887766544332211000000110011122345566666
Q ss_pred HHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHh
Q 018956 232 ISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 294 (348)
Q Consensus 232 ~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~ 294 (348)
+........+.+++++++.+++++.+..|+++.+++.++++|+++..+++|..+.++|+.+..
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 666777888999999999999999999999999999999999999999999999999988653
No 43
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.84 E-value=9.5e-08 Score=86.15 Aligned_cols=141 Identities=13% Similarity=0.205 Sum_probs=107.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHH
Q 018956 148 QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIV 227 (348)
Q Consensus 148 ~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (348)
+....|.++.++++++|+...++.|.. . +.+|.++.++...++.+.+++......+....... . .+...+....
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~--~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~--~-~~~~~~~~~~ 77 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI-Y--YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTL--I-QTPQKIFMLA 77 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH--H-cCHHHHHHHH
Confidence 345679999999999999999999764 4 68999999999998887666544322211110000 0 0112223334
Q ss_pred HHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHh
Q 018956 228 LSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 294 (348)
Q Consensus 228 ~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~ 294 (348)
.+++.....+...++++++.++...+++.+..|++..++++++++|+++..+++|.++.++|+++..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 5555565667788999999999999999999999999999999999999999999999999998764
No 44
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.77 E-value=2.6e-07 Score=82.74 Aligned_cols=133 Identities=14% Similarity=0.139 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHH
Q 018956 154 SVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLIS 233 (348)
Q Consensus 154 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (348)
..+.+.+++++|.+.+..|+..++ .++. ..+......+.+.|........ ..+.. .+...+..++..++..
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~--~~~~--~~~~~~~~~~~l~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~ 73 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK--EPDF--LWWALLAHSVLLTPYGLWYLAQ----VGWSR-LPATFWLLLAISAVAN 73 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc--hhHH--HHHHHHHHHHHHHHHHHHhccc----CCCCC-cchhhHHHHHHHHHHH
Confidence 568899999999999999988773 2333 3444455555555544322100 01111 1223344566677777
Q ss_pred HHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhh
Q 018956 234 VSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 295 (348)
Q Consensus 234 ~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~ 295 (348)
..+....+.+.++.++...+.+.+..|+++.++++++++|+++..+++|.++++.|+.+...
T Consensus 74 ~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 74 MVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 77788889999999999999999999999999999999999999999999999999987654
No 45
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.75 E-value=3.3e-07 Score=82.13 Aligned_cols=206 Identities=14% Similarity=0.175 Sum_probs=120.0
Q ss_pred HHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccccc----cc-----
Q 018956 80 VLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQ----LN----- 150 (348)
Q Consensus 80 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~----~~----- 150 (348)
+.+.++..+...|+.+.|.+..+-+.....++.++++..++|||++++++.|..+++.|..++.....+ .+
T Consensus 58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~ 137 (300)
T PF05653_consen 58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELI 137 (300)
T ss_pred HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHH
Confidence 366778888899999999999999999999999999999999999999999999999999986542211 11
Q ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHH------HHHHhhcccccccccccc
Q 018956 151 -------VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFI------IGPFLDGLLTNKNVFAFK 217 (348)
Q Consensus 151 -------~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~ 217 (348)
+..+...... +...+.....+|..+ + .+..|...++.+...- .............. +
T Consensus 138 ~~~~~~~fl~y~~~~~~-~~~~L~~~~~~r~g~-~-----~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~--f- 207 (300)
T PF05653_consen 138 ALLSQPGFLVYFILVLV-LILILIFFIKPRYGR-R-----NILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQ--F- 207 (300)
T ss_pred HHhcCcceehhHHHHHH-HHHHHHHhhcchhcc-c-----ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchh--h-
Confidence 1112111111 111222222222211 1 1122222222111100 00011100011111 1
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhH-HHHHHHHHHHhcCC--CCch----hhhhhHHHHHHHH
Q 018956 218 YTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLK-TCLVLAFGYVLLHD--PFSW----RNILGILIAVIGM 290 (348)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~-~v~~~v~s~~~~~e--~~t~----~~~~G~~li~~g~ 290 (348)
.++..|.+++...++...-.+..++++++.++.....+.+.- ...+++-|.++|+| +.++ ....|..+++.|+
T Consensus 208 ~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV 287 (300)
T PF05653_consen 208 TYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGV 287 (300)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh
Confidence 223334444433334344444558899999987776655544 55777788888988 4555 4566778888888
Q ss_pred HHHhh
Q 018956 291 VLYSY 295 (348)
Q Consensus 291 ~l~~~ 295 (348)
.+.+.
T Consensus 288 ~lL~~ 292 (300)
T PF05653_consen 288 FLLSS 292 (300)
T ss_pred heeec
Confidence 77654
No 46
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.67 E-value=9.2e-07 Score=78.13 Aligned_cols=121 Identities=19% Similarity=0.149 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCC--CCcchhHHHHH-HHHHHHhhhhhhhcc
Q 018956 19 VISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKP--FDPRAVMGFGV-LNGISIGLLNLSLGF 95 (348)
Q Consensus 19 ~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~al~~ 95 (348)
.+......+..|....+.+.+ +.....+|+.++.+++.+.......+... .++...+..++ ...+...+.++++++
T Consensus 137 ~~~~a~~~~~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 215 (260)
T TIGR00950 137 GISFALGTVLYKRLVKKEGPE-LLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTL 215 (260)
T ss_pred HHHHHHHHHHHhHHhhcCCch-HHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333334445667776643322 44555578898888887765543222211 12223344555 456788889999999
Q ss_pred cchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhh
Q 018956 96 NSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVG 140 (348)
Q Consensus 96 ~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~ 140 (348)
.+++.+.++.++.|+++++++++++||+++..++.|..+++.|++
T Consensus 216 ~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 216 VDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999864
No 47
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.56 E-value=2.4e-06 Score=78.67 Aligned_cols=139 Identities=12% Similarity=0.131 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHH
Q 018956 151 VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSC 230 (348)
Q Consensus 151 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (348)
..-+..++...++|+.+.++.|...+ .++++....++-..++++.++++....+.... .+. .+...+..+...|
T Consensus 12 ~~~~~~~~~~q~~~~~~~~~~k~a~~-~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~----~~~-~~~~~~~~l~l~g 85 (358)
T PLN00411 12 AVFLTAMLATETSVVGISTLFKVATS-KGLNIYPFLGYSYLLASLLLLPSLFFTNRSRS----LPP-LSVSILSKIGLLG 85 (358)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-CCCCccHHHHHHHHHHHHHHHHHHHHHHHhcc----cCc-chHHHHHHHHHHH
Confidence 34566778888999999999999986 68999999999999988888777654432110 000 1111234445566
Q ss_pred HHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHh------cCCCCchhhhhhHHHHHHHHHHHhh
Q 018956 231 LISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVL------LHDPFSWRNILGILIAVIGMVLYSY 295 (348)
Q Consensus 231 ~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~------~~e~~t~~~~~G~~li~~g~~l~~~ 295 (348)
++++.++...+..++++++..++++.+..|+++.++++++ ++|+++..+++|.++.++|+.+...
T Consensus 86 ~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 86 FLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 6665566677889999999999999999999999999999 6999999999999999999987654
No 48
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.35 E-value=1.3e-05 Score=69.51 Aligned_cols=142 Identities=13% Similarity=0.170 Sum_probs=112.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHH
Q 018956 149 LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVL 228 (348)
Q Consensus 149 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (348)
.+..|+++++.+-+.|++.-.+.|-+. ..++.++..+...++...++........+.... +...++..+.....
T Consensus 4 ~~~~Gil~~l~Ay~lwG~lp~y~kll~---~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~---~~~~~p~~~~~~~l 77 (293)
T COG2962 4 DSRKGILLALLAYLLWGLLPLYFKLLE---PLPATEILAHRVIWSFPFMLALLFLLRQWRELK---QLLKQPKTLLMLAL 77 (293)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH---HHHhCcHHHHHHHH
Confidence 346799999999999999999988873 578999999999999888776665554433222 22334545566666
Q ss_pred HHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018956 229 SCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 296 (348)
Q Consensus 229 ~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 296 (348)
+++.-..-.....++........++.-.+++|++.++.|.++++|+++..|++..++..+|+..-.+.
T Consensus 78 ~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 78 TALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 66555555555578999999999999999999999999999999999999999999999999875554
No 49
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.35 E-value=2e-06 Score=65.23 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=59.9
Q ss_pred HHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheee
Q 018956 80 VLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT 143 (348)
Q Consensus 80 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~ 143 (348)
+++++...+...+++.+|.+.+..+.++.++++.+++++++|||++.+++.++.++++|++++.
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4678888999999999999999999999999999999999999999999999999999998764
No 50
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.34 E-value=0.00053 Score=62.27 Aligned_cols=221 Identities=12% Similarity=0.042 Sum_probs=136.1
Q ss_pred hhHHHHHHHHHHHhhhhhhhcccchhHHH-HHHhhHHHHHHHHHHHhhcccc---c----hhhHHHHHHHhhhhheeec-
Q 018956 74 AVMGFGVLNGISIGLLNLSLGFNSVGFYQ-MTKLAIIPCTILLETLFFRKKF---S----RNIQLSLVILLVGVGIATV- 144 (348)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~-~l~~~~pi~~~i~~~l~l~e~~---s----~~~~~~~~l~~~G~~l~~~- 144 (348)
..++.|++..+++..+..+.+++.++... +-..++-+...++..++++|-. + ..-..+++++++|+.+...
T Consensus 75 ~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 75 PVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 44455778888999999999999988844 4445667788888888888654 2 2366788888999999776
Q ss_pred ---ccc---------ccchhHHHHHHHHHHHHHHHHH-------HHHHHhhhcCCCHHHHHHhhhH---HHHHHHHH-HH
Q 018956 145 ---TDL---------QLNVLGSVLSLLAVLTTCVAQI-------MTNTIQKKFKVSSTQLLYQSCP---YQALTLFI-IG 201 (348)
Q Consensus 145 ---~~~---------~~~~~G~~~~l~s~~~~a~~~v-------~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~-~~ 201 (348)
.|. .....|+++.+++.+.++.|+. ..+...+ .+.++.....-+.. .+..+.-. ..
T Consensus 155 g~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~-~g~~~~~~~lp~~~~~~~G~~~~n~~~~ 233 (345)
T PRK13499 155 GQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAA-LGVDPLYAALPSYVVIMGGGAITNLGFC 233 (345)
T ss_pred hhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 1225799999999999999994 3333211 34555544332222 22211111 00
Q ss_pred HHhhccccc-ccccccccC----chhHHHHHHHHHHHHHHHHHHHhhhcccCcchhh----hhhhhHHHHHHHHHHHhcC
Q 018956 202 PFLDGLLTN-KNVFAFKYT----PYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQ----VLGHLKTCLVLAFGYVLLH 272 (348)
Q Consensus 202 ~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~----~~~~~~~v~~~v~s~~~~~ 272 (348)
......... ....+.... ..-.......|+.-+..++.+....++.+..... +...+..+++.+.+. +++
T Consensus 234 ~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lk 312 (345)
T PRK13499 234 FIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLK 312 (345)
T ss_pred HHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhh
Confidence 110000010 001111111 1223344566666666666666666666444333 334677789999998 599
Q ss_pred CCCc------hhhhhhHHHHHHHHHHHhhh
Q 018956 273 DPFS------WRNILGILIAVIGMVLYSYC 296 (348)
Q Consensus 273 e~~t------~~~~~G~~li~~g~~l~~~~ 296 (348)
|.-+ ...++|++++++|..+....
T Consensus 313 E~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 313 EWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred hccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 9777 57789999999998886553
No 51
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.23 E-value=4.6e-05 Score=59.34 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHH
Q 018956 152 LGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCL 231 (348)
Q Consensus 152 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (348)
.|+++.+.+.++.+...++.|+-.++.+..+. .... ... + .... ++ ...+..+.+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~--~~~~--~~~---~--~~~~--------------~p--~~~i~lgl~ 56 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSH--AWDF--IAA---L--LAFG--------------LA--LRAVLLGLA 56 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccc--hhHH--HHH---H--HHHh--------------cc--HHHHHHHHH
Confidence 47889999999999999999998775432111 1100 000 0 0000 00 001222222
Q ss_pred HHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHH--hcCCCCchhhhhhHHHHHHHHHHHhh
Q 018956 232 ISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYV--LLHDPFSWRNILGILIAVIGMVLYSY 295 (348)
Q Consensus 232 ~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~--~~~e~~t~~~~~G~~li~~g~~l~~~ 295 (348)
+.....+....++++.+...+..+....++...+.++. +|||++|+.+++|.+++++|+++.+.
T Consensus 57 ~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 57 GYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 22233455678899999998888888887777777774 89999999999999999999999764
No 52
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.21 E-value=3.4e-05 Score=69.49 Aligned_cols=115 Identities=7% Similarity=-0.024 Sum_probs=81.4
Q ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHccccccCCCCcc---hhHHHHH-HHHHHHhhhhhhhcccchhH
Q 018956 25 IVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPR---AVMGFGV-LNGISIGLLNLSLGFNSVGF 100 (348)
Q Consensus 25 ~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~al~~~~~~~ 100 (348)
..+..|...+ +.+ |.... +..+++.+++.+....... ....++. ..+..++ +..+...++++++++++++.
T Consensus 163 ~~v~~r~~~~--~~~-~~~~~-~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~ 237 (293)
T PRK10532 163 YILSGQRAGA--EHG-PATVA-IGSLIAALIFVPIGALQAG-EALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRT 237 (293)
T ss_pred HHHHHHHHhc--cCC-chHHH-HHHHHHHHHHHHHHHHccC-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhH
Confidence 4455566655 333 55555 4455555555554332211 1112222 2234455 45677788899999999999
Q ss_pred HHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeec
Q 018956 101 YQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV 144 (348)
Q Consensus 101 ~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~ 144 (348)
+.++.++.|++..++++++++|+++..++.|..+++.|.+....
T Consensus 238 as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 238 FGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL 281 (293)
T ss_pred HHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988654
No 53
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.20 E-value=6.4e-05 Score=67.65 Aligned_cols=130 Identities=12% Similarity=-0.046 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHH
Q 018956 154 SVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLIS 233 (348)
Q Consensus 154 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (348)
....+.-.+.|+...+..|.... +.+|....++....+++.+++......... . ... .+......|.+.
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~--~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~-----~---~~~-~~~~~~~~g~~~ 78 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVE--SWPPLMMAGVRFLIAGILLLAFLLLRGHPL-----P---TLR-QWLNAALIGLLL 78 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHhCCCC-----C---cHH-HHHHHHHHHHHH
Confidence 34566778999999999998777 789999999999988888776543321110 0 111 122233344333
Q ss_pred -HHHHHHHHhhh-cccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhh
Q 018956 234 -VSVNFSTFLVI-GKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 295 (348)
Q Consensus 234 -~~~~~~~~~~i-~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~ 295 (348)
...+...+... ++.++...+++.++.|+++.+++.+ ++|+++..+++|..+.++|+.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 79 LAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 23344555666 8889999999999999999999975 7999999999999999999888654
No 54
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.18 E-value=5.8e-05 Score=68.03 Aligned_cols=130 Identities=14% Similarity=0.216 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHH
Q 018956 152 LGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCL 231 (348)
Q Consensus 152 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (348)
.++++.+.++++|+...+..|...+ +.+|.....+....+.+.+.+.. . ... .. ..+. ...+.+++
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~--~~~P~~~~~~R~~~a~l~l~~~~---~-~~~----~~-~~~~---~~~~~~~l 69 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSE--SLGPVGGAAMIYSVSGLLLLLTV---G-FPR----LR-QFPK---RYLLAGGL 69 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHc--cCChHHHHHHHHHHHHHHHHHHc---c-ccc----cc-cccH---HHHHHHhH
Confidence 4677899999999999999998877 68999999988877777665432 1 110 00 1111 12223333
Q ss_pred HHHHHHHHHHhhh----cccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhh
Q 018956 232 ISVSVNFSTFLVI----GKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 295 (348)
Q Consensus 232 ~~~~~~~~~~~~i----~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~ 295 (348)
....+....+... +..++...+++.++.|+++.++++++++|+++..+++|+++.++|+.+...
T Consensus 70 ~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 70 LFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence 3333333334433 456778889999999999999999999999999999999999999987653
No 55
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.16 E-value=7.9e-05 Score=60.07 Aligned_cols=119 Identities=18% Similarity=0.100 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhh-----cCCchHHHHHHHHHHHHHHHHHHHHHcc-ccc-------cCC--C--C---cchhHHHHHHHH
Q 018956 24 SIVICNKALISS-----LGFTFATTLTSWHLLVTFCSLHVALWMK-LFE-------HKP--F--D---PRAVMGFGVLNG 83 (348)
Q Consensus 24 ~~~~~~k~~~~~-----~~f~~p~~~~~~r~~~~~~~l~~~~~~~-~~~-------~~~--~--~---~~~~~~~~~~~~ 83 (348)
.-.+..|..+++ .+.+ |..+..+....+.+++.+..... ..+ ..+ . + +..++..+++..
T Consensus 14 l~~v~~~~~~~~~~~~~~~~~-~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (153)
T PF03151_consen 14 LRNVLIKKLLKKVSSNSKKLN-PLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLLAF 92 (153)
T ss_pred HHHHHHHHHHhcccccccCCC-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHHHH
Confidence 334455666665 3555 78888788888888877764322 111 011 0 1 112333466677
Q ss_pred HHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheee
Q 018956 84 ISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT 143 (348)
Q Consensus 84 ~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~ 143 (348)
+.+...+..++++++-..+++.....+.+.++++++++|+++..++.|+++.++|..+-.
T Consensus 93 ~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 93 LYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 788888999999999999999999999999999999999999999999999999998754
No 56
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.12 E-value=0.00012 Score=66.16 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHH
Q 018956 154 SVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLIS 233 (348)
Q Consensus 154 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (348)
.++.++++++|+...+..|...+ +.+|....++....+++.+++.. .. ... + +..+...++..
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~~~l~~~~---~~---~~~------~---~~~~~~~g~~~ 68 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLH--NMPPLMLAGLRFMLVAFPAIFFV---AR---PKV------P---LNLLLGYGLTI 68 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHh---cC---CCC------c---hHHHHHHHHHH
Confidence 35688999999999999998877 68999999999877665544322 10 000 0 11222233332
Q ss_pred HH-HHHHHHhhhcc-cCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhh
Q 018956 234 VS-VNFSTFLVIGK-TSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 295 (348)
Q Consensus 234 ~~-~~~~~~~~i~~-~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~ 295 (348)
.. .....+...++ .++...+++.+..|+++.++++++++|+++..+++|.++.++|+.+...
T Consensus 69 ~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 69 SFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 22 22233556666 5778889899999999999999999999999999999999999887653
No 57
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.07 E-value=0.00016 Score=66.74 Aligned_cols=134 Identities=13% Similarity=0.069 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCC-HHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHH
Q 018956 154 SVLSLLAVLTTCVAQIMTNTIQKKFKVS-STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI 232 (348)
Q Consensus 154 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (348)
..++++-=.+...++++.|...+ ..+ |+.+..+....+.+...+... .+....++ .......+..++..|++
T Consensus 51 ~~~~~~wy~~s~~~~~~nK~vl~--~~~~P~~l~~~~~~~~~l~~~~~~~--~~~~~~~~---~~~~~~~~~~llp~gl~ 123 (350)
T PTZ00343 51 ALLFLTWYALNVLYVVDNKLALN--MLPLPWTISSLQLFVGWLFALLYWA--TGFRKIPR---IKSLKLFLKNFLPQGLC 123 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hCChhHHHHHHHHHHHHHHHHHHHH--hCCCCCCC---CCCHHHHHHHHHHHHHH
Confidence 33443333444556888888887 467 999999998888766544322 11111111 11111233455666666
Q ss_pred HHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHh
Q 018956 233 SVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 294 (348)
Q Consensus 233 ~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~ 294 (348)
....+...+.+++++++..++++...+|+++++++.++++|+++..++.|+++++.|+.+..
T Consensus 124 ~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 124 HLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 66556666788999999999999999999999999999999999999999999999998864
No 58
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.02 E-value=6.5e-05 Score=57.36 Aligned_cols=71 Identities=17% Similarity=0.344 Sum_probs=58.8
Q ss_pred HHHHHHHHH-HHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhc
Q 018956 226 IVLSCLISV-SVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC 297 (348)
Q Consensus 226 ~~~~~~~~~-~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~ 297 (348)
.+..|+++. ..+...+.+.++.++ ..+.+..+.|+++.+++.++++|+++..+++|.+++++|+++....+
T Consensus 37 ~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 37 LILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 333344443 556667888999885 78899999999999999999999999999999999999999987643
No 59
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.98 E-value=0.00027 Score=63.94 Aligned_cols=121 Identities=12% Similarity=0.088 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHHHHHhhh
Q 018956 165 CVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVI 244 (348)
Q Consensus 165 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 244 (348)
...+++.|...++ -..|..+..+....+.+...+... .+... ... .+..-+..+...|++........+.++
T Consensus 15 ~~~~~~NK~~l~~-~~~P~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~l 86 (302)
T TIGR00817 15 VYFNIYNKKLLNV-FPYPYFKTLISLAVGSLYCLLSWS--SGLPK-RLK----ISSALLKLLLPVAIVHTIGHVTSNVSL 86 (302)
T ss_pred HHHHHHHHHHHhh-CChhHHHHHHHHHHHHHHHHHHHH--hCCCC-CCC----CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777773 246778888777766655443311 11111 111 112233445556666666667778999
Q ss_pred cccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHH
Q 018956 245 GKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLY 293 (348)
Q Consensus 245 ~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~ 293 (348)
+++++...+++....|+++.+++.++++|+++..+++|.+++++|+.+.
T Consensus 87 ~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 87 SKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999764
No 60
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.92 E-value=0.00014 Score=65.25 Aligned_cols=129 Identities=15% Similarity=0.115 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHH
Q 018956 153 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI 232 (348)
Q Consensus 153 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (348)
|++++++++++|+...+..|+.. +.++.+... ...+.+...........+ . ......+..-..+|+.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~---g~~~~~~~~--~~~g~l~~~~~~~~~~~~---~-----~~~~~~~~~g~l~G~~ 68 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG---GGPYSQTLG--TTFGALILSIAIAIFVLP---E-----FWALSIFLVGLLSGAF 68 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC---CCHHHHHHH--HHHHHHHHHHHHHHHhCC---c-----ccccHHHHHHHHHHHH
Confidence 67899999999999999998874 445554442 233443333222222110 0 1224455566667777
Q ss_pred HHHHHHHHHhhhcccCcchhhhhhh-hHHHHHHHHHHHhcCCCCchhh----hhhHHHHHHHHHHHh
Q 018956 233 SVSVNFSTFLVIGKTSPVTYQVLGH-LKTCLVLAFGYVLLHDPFSWRN----ILGILIAVIGMVLYS 294 (348)
Q Consensus 233 ~~~~~~~~~~~i~~~~a~~~~~~~~-~~~v~~~v~s~~~~~e~~t~~~----~~G~~li~~g~~l~~ 294 (348)
-...++.++.++++.+...+-.+.+ +.+++..+++.+++||+.+..+ ++|.+++++|+.+..
T Consensus 69 w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~ 135 (290)
T TIGR00776 69 WALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS 135 (290)
T ss_pred HHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence 7777889999999999888877777 8888999999999999999999 999999999988864
No 61
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.86 E-value=0.00073 Score=53.34 Aligned_cols=132 Identities=20% Similarity=0.252 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHH
Q 018956 153 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI 232 (348)
Q Consensus 153 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (348)
..++++.+.++-+.+..+.-++.++.+ +|+...+.....+.+.+.......+.. ...... . .-++...+|++
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~~~----~--~p~w~~lGG~l 73 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRP-SLASLS----S--VPWWAYLGGLL 73 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhccc-ccchhc----c--CChHHhccHHH
Confidence 357888999999999999999988544 688888888888888877666655533 111111 1 11344458999
Q ss_pred HHHHHHHHHhhhcccCcchhhhhhhhHHH-HHHHHHHH-hc---CCCCchhhhhhHHHHHHHHHH
Q 018956 233 SVSVNFSTFLVIGKTSPVTYQVLGHLKTC-LVLAFGYV-LL---HDPFSWRNILGILIAVIGMVL 292 (348)
Q Consensus 233 ~~~~~~~~~~~i~~~~a~~~~~~~~~~~v-~~~v~s~~-~~---~e~~t~~~~~G~~li~~g~~l 292 (348)
+..+.......+++.++..+......-.+ .+.+++.+ +| .+++++.+++|.+++++|+.+
T Consensus 74 G~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 74 GVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 98888888899999999988877776655 55677875 33 458999999999999999863
No 62
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.85 E-value=7.1e-05 Score=58.27 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=62.6
Q ss_pred hHHHH-HHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHH--hhccccchhhHHHHHHHhhhhheeeccc
Q 018956 75 VMGFG-VLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETL--FFRKKFSRNIQLSLVILLVGVGIATVTD 146 (348)
Q Consensus 75 ~~~~~-~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l--~l~e~~s~~~~~~~~l~~~G~~l~~~~~ 146 (348)
++..+ +++.+...+.+.+++..|.+.+.-+.+..++++.+.++. ++||+++..++.|+.++++|+.+....+
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 34444 488999999999999999999999989888888888874 8999999999999999999999977543
No 63
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=5.7e-05 Score=66.37 Aligned_cols=204 Identities=11% Similarity=0.115 Sum_probs=124.6
Q ss_pred HHHHH-HHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeecccccc-----
Q 018956 76 MGFGV-LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQL----- 149 (348)
Q Consensus 76 ~~~~~-~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~~~~----- 149 (348)
+..|+ .+.++-..++.|+.+.|.+..+-+.++..+..++++..+++||++..-.+|.+++++|..+++....+.
T Consensus 67 Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t 146 (335)
T KOG2922|consen 67 WWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIES 146 (335)
T ss_pred HHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccccc
Confidence 33444 777888999999999999999999999999999999999999999999999999999999987643211
Q ss_pred -----------chhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHH----------HHhhccc
Q 018956 150 -----------NVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIG----------PFLDGLL 208 (348)
Q Consensus 150 -----------~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~ 208 (348)
.++.+...++-.++ +-..+.+ ++++ ..+++.|...++.+..+-.. ..+.+..
T Consensus 147 ~~el~~~~~~~~Fliy~~~iil~~~--il~~~~~---p~~g--~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ 219 (335)
T KOG2922|consen 147 VEEVWELATEPGFLVYVIIIILIVL--ILIFFYA---PRYG--QTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNN 219 (335)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHH--HHheeec---cccc--ccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCc
Confidence 11111111111111 1111111 1111 22445555555544321111 1112111
Q ss_pred ccccccccccCchhHHHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhH-HHHHHHHHHHhcCC--CCch----hhhh
Q 018956 209 TNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLK-TCLVLAFGYVLLHD--PFSW----RNIL 281 (348)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~-~v~~~v~s~~~~~e--~~t~----~~~~ 281 (348)
+ . ..+..|.+++....+...-....+++++..++...+.+.++- ..+++..|.++|.| ..+. ....
T Consensus 220 q----l---~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~ 292 (335)
T KOG2922|consen 220 Q----L---FYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELC 292 (335)
T ss_pred c----c---ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 1 1 112233333333333333334447888888877776666644 66778888999988 3443 4567
Q ss_pred hHHHHHHHHHHH
Q 018956 282 GILIAVIGMVLY 293 (348)
Q Consensus 282 G~~li~~g~~l~ 293 (348)
|...++.|+.+.
T Consensus 293 Gf~ti~~G~flL 304 (335)
T KOG2922|consen 293 GFVTIFLGIFLL 304 (335)
T ss_pred hHHHhhheeeEe
Confidence 788888887775
No 64
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.82 E-value=0.00026 Score=52.30 Aligned_cols=73 Identities=27% Similarity=0.214 Sum_probs=60.3
Q ss_pred cchhHHHHHHHHHHHhhhhhhhcccchhH-HHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeec
Q 018956 72 PRAVMGFGVLNGISIGLLNLSLGFNSVGF-YQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV 144 (348)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~-~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~ 144 (348)
+...+..-+++.++..+...+++++|.+. +.+-.....+.+++.+++++||+.+..+++++.+++.|++....
T Consensus 30 ~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 30 LWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 34444455688888899999999999999 45555566778889999999999999999999999999987543
No 65
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.82 E-value=0.00034 Score=52.49 Aligned_cols=68 Identities=15% Similarity=0.050 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHhhhhhhhcccchhHHHHH-HhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhhee
Q 018956 75 VMGFGVLNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIA 142 (348)
Q Consensus 75 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~ 142 (348)
....-+++.++.++...+++++|.+.+..+ .....+.+++.+++++||+++..++.++.++++|++..
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 334455788888999999999999995554 45677888899999999999999999999999999874
No 66
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.81 E-value=0.00028 Score=53.94 Aligned_cols=71 Identities=17% Similarity=0.126 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHhhhhhhhcccchhHHHHHH-hhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeec
Q 018956 74 AVMGFGVLNGISIGLLNLSLGFNSVGFYQMTK-LAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV 144 (348)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~ 144 (348)
.....-++++++.++...+++++|.+.+..+- ....+.+++.+.++++|+++..+++++.++++|++....
T Consensus 32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 34445568888999999999999999976664 688899999999999999999999999999999998754
No 67
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.80 E-value=0.00058 Score=61.78 Aligned_cols=126 Identities=19% Similarity=0.204 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhhhcCCC--HHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHHHHH
Q 018956 164 TCVAQIMTNTIQKKFKVS--STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTF 241 (348)
Q Consensus 164 ~a~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (348)
+..+.+++|++.++.... +..+++.+.....+...+........ . .....+.-....+++........+
T Consensus 12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF08449_consen 12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFP-----K----SRKIPLKKYAILSFLFFLASVLSN 82 (303)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccc-----C----CCcChHHHHHHHHHHHHHHHHHHH
Confidence 344678889988765545 77777776666665544433322200 0 011112223334455556667778
Q ss_pred hhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcc
Q 018956 242 LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS 298 (348)
Q Consensus 242 ~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~ 298 (348)
.++++.+..+..+....+++...+.+.++++++.+..++.+..++.+|+.+....+.
T Consensus 83 ~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~ 139 (303)
T PF08449_consen 83 AALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDS 139 (303)
T ss_pred HHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccc
Confidence 889999999999999999999999999999999999999999999999999887544
No 68
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.75 E-value=0.00021 Score=54.23 Aligned_cols=59 Identities=20% Similarity=0.184 Sum_probs=52.1
Q ss_pred HHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHh
Q 018956 236 VNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 294 (348)
Q Consensus 236 ~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~ 294 (348)
..+....++++.+...+..+-.+.++.+.+.|+++|||++|+.+++|.++++.|+++..
T Consensus 50 ~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 50 AMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34555677899999988888889999999999999999999999999999999988754
No 69
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.71 E-value=0.00052 Score=51.20 Aligned_cols=69 Identities=14% Similarity=0.002 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHhhhhhhhcccchhHHHHHH-hhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheee
Q 018956 75 VMGFGVLNGISIGLLNLSLGFNSVGFYQMTK-LAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT 143 (348)
Q Consensus 75 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~ 143 (348)
....-+++..+.++...+++.+|.+.+..+- ....+.+++.+++++||++|+.++.++.++++|++...
T Consensus 32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 3344558888889999999999999955554 47788889999999999999999999999999998864
No 70
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.68 E-value=0.0011 Score=60.29 Aligned_cols=139 Identities=21% Similarity=0.300 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHH
Q 018956 152 LGSVLSLLAVLTTCVAQIMTNTIQKK-FKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSC 230 (348)
Q Consensus 152 ~G~~~~l~s~~~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (348)
.+.+++-.-++|-+..++..+.+.++ .+.+..+. ++....-.++..+....-.+. +.+....... ++.-++.+
T Consensus 13 ~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs-~~~Y~~l~~vy~~~~~~r~~~----~~~~~~~~~~-~w~y~lla 86 (334)
T PF06027_consen 13 IVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQS-FFNYVLLALVYTPILLYRRGF----KKWLKVLKRP-WWKYFLLA 86 (334)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHH-HHHHHHHHHHHhhhhhhcccc----ccchhhcchh-HHHHHHHH
Confidence 45555555566666666666666554 23333333 333332222222222211111 1111111111 22333346
Q ss_pred HHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018956 231 LISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 296 (348)
Q Consensus 231 ~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 296 (348)
++=+..++....+.++++.+...++.....+++.++|++++++++++.+++|+.+++.|+.+....
T Consensus 87 ~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 87 LLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS 152 (334)
T ss_pred HHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence 777788999999999999999999999999999999999999999999999999999998886654
No 71
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.65 E-value=0.00065 Score=51.23 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhhhhhhhcccchhHHHHHH-hhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeec
Q 018956 76 MGFGVLNGISIGLLNLSLGFNSVGFYQMTK-LAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV 144 (348)
Q Consensus 76 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~ 144 (348)
+..-+++.++..+...+++.+|.+.+..+. ....+.+++.+++++||+++..++.++.++++|++....
T Consensus 34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 344558888888899999999999977664 467888899999999999999999999999999998754
No 72
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.62 E-value=1.3e-05 Score=67.53 Aligned_cols=204 Identities=16% Similarity=0.188 Sum_probs=139.0
Q ss_pred HHHHHHHHHhhhhhhhcccchhHHHHHHh-hHHHHHHHHHHHhhccccchhhH----HHHHHHhhhhheeecccc-----
Q 018956 78 FGVLNGISIGLLNLSLGFNSVGFYQMTKL-AIIPCTILLETLFFRKKFSRNIQ----LSLVILLVGVGIATVTDL----- 147 (348)
Q Consensus 78 ~~~~~~~~~~~~~~al~~~~~~~~~~l~~-~~pi~~~i~~~l~l~e~~s~~~~----~~~~l~~~G~~l~~~~~~----- 147 (348)
.|.+..++...++.+.+++.++.+.-+.. +.-+-+.+++++.+||..+..+. .+++++++|+.+-++.|.
T Consensus 65 sG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~ 144 (288)
T COG4975 65 SGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEE 144 (288)
T ss_pred hhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccc
Confidence 35677778888899999988887654443 44566678999999999987764 568888999999887542
Q ss_pred ---ccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHH
Q 018956 148 ---QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLF 224 (348)
Q Consensus 148 ---~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (348)
+....|+...+.+.+.|-.|.+..|.. +.|.++...-+.. .+............ +...+... +
T Consensus 145 ~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f----~v~g~saiLPqAi----GMv~~ali~~~~~~-----~~~~~K~t-~ 210 (288)
T COG4975 145 ENPSNLKKGIVILLISTLGYVGYVVLFQLF----DVDGLSAILPQAI----GMVIGALILGFFKM-----EKRFNKYT-W 210 (288)
T ss_pred cChHhhhhheeeeeeeccceeeeEeeeccc----cccchhhhhHHHH----HHHHHHHHHhhccc-----ccchHHHH-H
Confidence 112468888899999999999987776 4566655543332 12222222211000 01112222 3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhh----hhhHHHHHHHHHHHhh
Q 018956 225 FIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRN----ILGILIAVIGMVLYSY 295 (348)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~----~~G~~li~~g~~l~~~ 295 (348)
.-...|+.-...|...+.+.++.+-.+.=.++-+..+++++-+.++++|+-|..+ ++|++++++|..+...
T Consensus 211 ~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 211 LNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred HHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 4455677777777888777777776666566667788899999999999988765 5677888888766544
No 73
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.61 E-value=0.0029 Score=56.41 Aligned_cols=141 Identities=21% Similarity=0.107 Sum_probs=96.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHH
Q 018956 150 NVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLS 229 (348)
Q Consensus 150 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (348)
...+....+..++.|+......+....+ ..+......+..........+... .. ... ... .....+...+..
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~---~~~--~~~~~~~~~~~~ 76 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLLL-LE-PRG---LRP--ALRPWLLLLLLA 76 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHH-hh-ccc---ccc--cccchHHHHHHH
Confidence 3457788888889999999988888763 244555544444434433211111 11 000 000 011133455556
Q ss_pred HHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHH-HhcCCCCchhhhhhHHHHHHHHHHHhhhcc
Q 018956 230 CLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGY-VLLHDPFSWRNILGILIAVIGMVLYSYCCS 298 (348)
Q Consensus 230 ~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~-~~~~e~~t~~~~~G~~li~~g~~l~~~~~~ 298 (348)
++.........+..++++++...+.+.+..|++..+++. ++++|+++..++.|..+.+.|+.+......
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~ 146 (292)
T COG0697 77 LLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGG 146 (292)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCC
Confidence 666666667778889999999999999999999999996 777999999999999999999988765443
No 74
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=97.61 E-value=0.00018 Score=62.38 Aligned_cols=132 Identities=16% Similarity=0.212 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHH
Q 018956 153 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI 232 (348)
Q Consensus 153 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (348)
|++.+++|+++++...|=.||.-. .|++-.+.+++....+.........+ .+.+..+..++|.+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~---gDg~~fQw~~~~~i~~~g~~v~~~~~-------------~p~f~p~amlgG~l 64 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDT---GDGFFFQWVMCSGIFLVGLVVNLILG-------------FPPFYPWAMLGGAL 64 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccC---CCcHHHHHHHHHHHHHHHHHHHHhcC-------------CCcceeHHHhhhhh
Confidence 678889999999998888777633 36776666665444333333222211 11123456667777
Q ss_pred HHHHHHHHHhhhcccCc-chhhhhhhhHHHHHHHHHHH-hcCCC-----CchhhhhhHHHHHHHHHHHhhhcccc
Q 018956 233 SVSVNFSTFLVIGKTSP-VTYQVLGHLKTCLVLAFGYV-LLHDP-----FSWRNILGILIAVIGMVLYSYCCSLE 300 (348)
Q Consensus 233 ~~~~~~~~~~~i~~~~a-~~~~~~~~~~~v~~~v~s~~-~~~e~-----~t~~~~~G~~li~~g~~l~~~~~~~~ 300 (348)
-...|....-++|..+= ....+.+...-+.+...+-+ +||++ -++.+.+|.+++++|..+|...|...
T Consensus 65 W~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 65 WATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 76677777777887662 33345555666666666654 66553 45789999999999999998876644
No 75
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.46 E-value=0.0044 Score=46.52 Aligned_cols=58 Identities=16% Similarity=0.282 Sum_probs=48.0
Q ss_pred HHHHHhhhcccCcchh-hhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHh
Q 018956 237 NFSTFLVIGKTSPVTY-QVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 294 (348)
Q Consensus 237 ~~~~~~~i~~~~a~~~-~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~ 294 (348)
.+....++|+.+-..+ ++...+..+.+.+.+.++|+|++|+.+++|+.+++.|++..+
T Consensus 49 f~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 49 FSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3444666777765443 777778888999999999999999999999999999998865
No 76
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.45 E-value=0.0011 Score=50.62 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=48.5
Q ss_pred HHHHHhhhcccCcchh-hhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018956 237 NFSTFLVIGKTSPVTY-QVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 296 (348)
Q Consensus 237 ~~~~~~~i~~~~a~~~-~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 296 (348)
.+....++|+.+-..+ ++...+..+.+.++++++|||++|+.+++|+.++++|++..+..
T Consensus 44 f~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 44 YIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 3445666777765544 55567888899999999999999999999999999999887543
No 77
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.42 E-value=0.0014 Score=47.91 Aligned_cols=59 Identities=20% Similarity=0.116 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhhhhhhcccchhHHH-HHHhhHHHHHHHHHHHhhccccchhhHHHHHHH
Q 018956 77 GFGVLNGISIGLLNLSLGFNSVGFYQ-MTKLAIIPCTILLETLFFRKKFSRNIQLSLVIL 135 (348)
Q Consensus 77 ~~~~~~~~~~~~~~~al~~~~~~~~~-~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~ 135 (348)
..-.+++++..+...+++++|.+.+. +......+.+.+.+.+++||++|..|+.++.++
T Consensus 34 ~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 34 LAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 33448888889999999999999964 455688999999999999999999999998764
No 78
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.36 E-value=0.0018 Score=48.88 Aligned_cols=59 Identities=7% Similarity=0.189 Sum_probs=48.2
Q ss_pred HHHHhhhcccCcchh-hhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018956 238 FSTFLVIGKTSPVTY-QVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 296 (348)
Q Consensus 238 ~~~~~~i~~~~a~~~-~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 296 (348)
+....++|+.+-..+ ++...+..+.++++++++|+|++++.+++|+.++++|++..+..
T Consensus 45 ~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 334566777765544 55677788899999999999999999999999999999998654
No 79
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.25 E-value=0.015 Score=45.99 Aligned_cols=137 Identities=16% Similarity=0.123 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHH
Q 018956 151 VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSC 230 (348)
Q Consensus 151 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (348)
.+..+..+.+.++-..+.-+.-++.+..+ +|..........+.+.+.......++..... .... .-++..++|
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~~~~~a----~~~~--~pwW~~~GG 76 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQGHPGLA----AVAS--APWWAWIGG 76 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCchh----hccC--CchHHHHcc
Confidence 45678889999999999999999888443 6777777777777777776666544333222 1111 123555677
Q ss_pred HHHHHHHHHHHhhhcccCcchhhhhhhhH-HHHHHHHHHHhc-C---CCCchhhhhhHHHHHHHHHHHh
Q 018956 231 LISVSVNFSTFLVIGKTSPVTYQVLGHLK-TCLVLAFGYVLL-H---DPFSWRNILGILIAVIGMVLYS 294 (348)
Q Consensus 231 ~~~~~~~~~~~~~i~~~~a~~~~~~~~~~-~v~~~v~s~~~~-~---e~~t~~~~~G~~li~~g~~l~~ 294 (348)
+++..+-........+.+++.+..+-... -+.+.+++.+=+ | .+++...++|..++++|+++.+
T Consensus 77 ~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 77 LLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred chhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 88877777778888888887776555544 445566665533 3 4799999999999999966654
No 80
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.23 E-value=0.0077 Score=52.72 Aligned_cols=100 Identities=10% Similarity=0.001 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhh
Q 018956 41 ATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFF 120 (348)
Q Consensus 41 p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l 120 (348)
|+...+=|.+-..+...++....+.+.+++..++-+..|+++...+.+...+.+....+.+..+.++.++...+.+.+++
T Consensus 164 ~~~~~lPqaiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il 243 (269)
T PF06800_consen 164 GWSAFLPQAIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFIL 243 (269)
T ss_pred hhHhHHHHHHHHHHHHHHHhhcccccccccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEE
Confidence 55555444444333333333322233333334455667889999999999999999999999999999999999999999
Q ss_pred ccccchhhHH----HHHHHhhhhh
Q 018956 121 RKKFSRNIQL----SLVILLVGVG 140 (348)
Q Consensus 121 ~e~~s~~~~~----~~~l~~~G~~ 140 (348)
||+-+++++. ++.++++|.+
T Consensus 244 ~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 244 KEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred EecCchhhHHHHHHHHHHHHHhhh
Confidence 9999888665 3444444443
No 81
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.15 E-value=0.0038 Score=46.63 Aligned_cols=59 Identities=19% Similarity=0.136 Sum_probs=49.0
Q ss_pred HHHHHhhhcccCcch-hhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhh
Q 018956 237 NFSTFLVIGKTSPVT-YQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 295 (348)
Q Consensus 237 ~~~~~~~i~~~~a~~-~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~ 295 (348)
.+....++|+.+-.. .++...+..+.+.++++++|+|++|+.+++|+.+++.|++..+.
T Consensus 43 f~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 43 MALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 344456677766544 47888888999999999999999999999999999999998754
No 82
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.08 E-value=0.0021 Score=56.05 Aligned_cols=75 Identities=27% Similarity=0.404 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcc
Q 018956 224 FFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS 298 (348)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~ 298 (348)
......+++-...+...+.++++.+|.+..++...+.+++.+++.++++++++..||+++.+.++|+.+......
T Consensus 18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 344456666667778888999999999999999999999999999999999999999999999999998765443
No 83
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.05 E-value=0.0047 Score=45.70 Aligned_cols=59 Identities=14% Similarity=0.232 Sum_probs=49.4
Q ss_pred HHHHhhhcccCcch-hhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018956 238 FSTFLVIGKTSPVT-YQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 296 (348)
Q Consensus 238 ~~~~~~i~~~~a~~-~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 296 (348)
+....++|+.+-.. .++...+-.+.+.+.++++|+|+.++.+++|+.++++|++..+..
T Consensus 45 ~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 45 YLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 34456678866544 488888889999999999999999999999999999999987754
No 84
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.98 E-value=0.0077 Score=54.85 Aligned_cols=140 Identities=14% Similarity=0.059 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhccccccc--ccccccCchhHHHHHH
Q 018956 151 VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKN--VFAFKYTPYVLFFIVL 228 (348)
Q Consensus 151 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 228 (348)
..|+++++++++||+...+=+|| .| .-+++.. |. ..+....+ ..++..+....+. ....+.+...+....+
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k---~w~wE~~-W~-v~gi~~wl-~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l 78 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VK---KWSWETM-WS-VGGIFSWL-ILPWLIAALLLPDFWAYYSSFSGSTLLPVFL 78 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cC---CCchhHH-HH-HHHHHHHH-HHHHHHHHHHhhhHHHHHHhcCHHHHHHHHH
Confidence 57999999999999999888877 33 2344444 43 22222211 1221111000010 1112245566778888
Q ss_pred HHHHHHHHHHHHHhhhcccCcchh-hhhhhhHHHHHHHHHHHhcCCCC---c----hhhhhhHHHHHHHHHHHhhhc
Q 018956 229 SCLISVSVNFSTFLVIGKTSPVTY-QVLGHLKTCLVLAFGYVLLHDPF---S----WRNILGILIAVIGMVLYSYCC 297 (348)
Q Consensus 229 ~~~~~~~~~~~~~~~i~~~~a~~~-~~~~~~~~v~~~v~s~~~~~e~~---t----~~~~~G~~li~~g~~l~~~~~ 297 (348)
+|++-...+...+..+|+.+-... .+...+.-+.+++++.+++||-. + ...++|.+++++|+++..++-
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag 155 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG 155 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888889999999999875554 44555777888999999998743 2 357789999999999987743
No 85
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.66 E-value=0.00036 Score=59.71 Aligned_cols=135 Identities=14% Similarity=0.162 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHH
Q 018956 151 VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSC 230 (348)
Q Consensus 151 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (348)
..|..+..++ ..+....++.++... .+|.++....++.-.++..|.......+.. .+..... +++.=|
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~~e---~~p~e~a~~r~l~~mlit~pcliy~~~~v~------gp~g~R~--~LiLRg 104 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKVLE---NDPMELASFRLLVRMLITYPCLIYYMQPVI------GPEGKRK--WLILRG 104 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhhhc---cChhHhhhhhhhhehhhhheEEEEEeeeee------cCCCcEE--EEEeeh
Confidence 4577777777 555566666666543 355555544433333333333332222210 0111111 122234
Q ss_pred HHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhc
Q 018956 231 LISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC 297 (348)
Q Consensus 231 ~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~ 297 (348)
+.++......+++.++.+-..+.++....|++++++++.+++|+.|....+|..+.+.|+++.....
T Consensus 105 ~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 105 FMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred hhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 4444445556777888888889999999999999999999999999999999999999999876443
No 86
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.56 E-value=0.0073 Score=54.33 Aligned_cols=117 Identities=15% Similarity=0.233 Sum_probs=80.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHH
Q 018956 150 NVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLS 229 (348)
Q Consensus 150 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (348)
...|..+++.++++.+...+++|+-.++.+.....--. . ..+...++.+|.-++ .
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~-----~-------------------~~~~l~~~~W~~G~~-~ 59 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGS-----G-------------------GRSYLRRPLWWIGLL-L 59 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-----h-------------------hhHHHhhHHHHHHHH-H
Confidence 46799999999999999999999976543221110000 0 000001111112222 2
Q ss_pred HHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHh
Q 018956 230 CLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 294 (348)
Q Consensus 230 ~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~ 294 (348)
...+ ....+.+....++...+.++.+..++..+++..+++|+++...+.|..+++.|..+..
T Consensus 60 ~~~g---~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 60 MVLG---EILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred Hhcc---hHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 2223 2344556778888888999999999999999999999999999999999999987754
No 87
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.42 E-value=0.049 Score=46.66 Aligned_cols=95 Identities=9% Similarity=0.017 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHccccccCCCCcchhHHH----HHHH-HHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHh
Q 018956 45 TSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGF----GVLN-GISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLF 119 (348)
Q Consensus 45 ~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~ 119 (348)
+..-|.++.++.+++-.-. -.. ....+.+++. +++. .+.+.+...++..+|...+.++.+..|.+.++.++++
T Consensus 180 ~a~gm~vAaviv~Pig~~~-ag~-~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~ 257 (292)
T COG5006 180 VAVGMLVAALIVLPIGAAQ-AGP-ALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIF 257 (292)
T ss_pred HHHHHHHHHHHHhhhhhhh-cch-hhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHH
Confidence 3366777777666653311 111 1112233333 3322 3466777899999999999999999999999999999
Q ss_pred hccccchhhHHHHHHHhhhhhe
Q 018956 120 FRKKFSRNIQLSLVILLVGVGI 141 (348)
Q Consensus 120 l~e~~s~~~~~~~~l~~~G~~l 141 (348)
+||+++..||.++..++.+..=
T Consensus 258 L~e~ls~~qwlaI~~ViaAsaG 279 (292)
T COG5006 258 LGETLTLIQWLAIAAVIAASAG 279 (292)
T ss_pred hcCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999988877663
No 88
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.35 E-value=0.011 Score=44.55 Aligned_cols=68 Identities=22% Similarity=0.164 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhhhhhhhcccchhHHHHH-HhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheee
Q 018956 76 MGFGVLNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT 143 (348)
Q Consensus 76 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~ 143 (348)
...=+++..+...+++.+...+.+.+.-+ +++.-++|++.++++.+|..+++++.++++++.|+.+++
T Consensus 45 ~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lcv 113 (113)
T PF10639_consen 45 IIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALCV 113 (113)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeeeC
Confidence 33334666777888889999998885555 688889999999998888889999999999999998763
No 89
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.35 E-value=0.097 Score=44.94 Aligned_cols=68 Identities=16% Similarity=0.107 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhhe
Q 018956 74 AVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGI 141 (348)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l 141 (348)
..+...++......+..+.++|.+.....+.....++++.+++.++++++++..++.+..+.+.|+.+
T Consensus 154 ~~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 154 AVWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 34444556677778889999999999999999999999999999999999999999999999998764
No 90
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.25 E-value=0.28 Score=38.67 Aligned_cols=113 Identities=16% Similarity=0.098 Sum_probs=77.1
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHcccc-cc---CCCCcchhHHHHHHHHHHHhhhhhhhcccchhHH
Q 018956 26 VICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLF-EH---KPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFY 101 (348)
Q Consensus 26 ~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~ 101 (348)
..+|-.+-+..+ +|+.-++..+..+.+.+.++....+. +. ++.+ ++.+..|++......+.......+.++..
T Consensus 17 ~~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p-~w~~lGG~lG~~~V~~~~~~vp~lG~~~~ 93 (138)
T PF04657_consen 17 AAFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRPSLASLSSVP-WWAYLGGLLGVFFVLSNIILVPRLGAALT 93 (138)
T ss_pred HHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCC-hHHhccHHHHHHHHHHHHHHhhhhhHHHH
Confidence 344444444323 48999999999999988877554332 21 1222 33334677778888888888899888886
Q ss_pred HHHHhh-HHHHHHHHHHH----hhccccchhhHHHHHHHhhhhhe
Q 018956 102 QMTKLA-IIPCTILLETL----FFRKKFSRNIQLSLVILLVGVGI 141 (348)
Q Consensus 102 ~~l~~~-~pi~~~i~~~l----~l~e~~s~~~~~~~~l~~~G~~l 141 (348)
..+.-. +.+...++..+ .-|++++.+|..++.+.++|+.+
T Consensus 94 ~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 94 TILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 655443 44455566664 45788999999999999999864
No 91
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.76 E-value=0.11 Score=45.77 Aligned_cols=134 Identities=9% Similarity=0.001 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHc-ccc-------ccCCCCcchhHHH
Q 018956 7 FQLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWM-KLF-------EHKPFDPRAVMGF 78 (348)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~-~~~-------~~~~~~~~~~~~~ 78 (348)
.....+..+..+..+=...+-..+.++.+++.+ ++.+.++-=+...+........ +.. +..+.-+++++..
T Consensus 169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s-~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~ 247 (327)
T KOG1581|consen 169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVS-SLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLY 247 (327)
T ss_pred CchHhHHHHHHHHHHHhhHHhHHHHHhccCCcc-HhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHH
Confidence 355566666666666666666777788876666 5555555444444444443221 111 1123335788888
Q ss_pred HHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhhe
Q 018956 79 GVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGI 141 (348)
Q Consensus 79 ~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l 141 (348)
+.+.+.+..+.++.++.-.+=..+++..+-=++.+.++.+.++.+.+..||.++.+.++|+.+
T Consensus 248 s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 248 STCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 999999999998888776666677777788899999999999999999999999999998876
No 92
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.70 E-value=0.55 Score=42.49 Aligned_cols=140 Identities=12% Similarity=0.135 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh--cCCCHHHHHHhhhHHHHHHHHHHHHHhh-----cccccccccccccCchhHHHH
Q 018956 154 SVLSLLAVLTTCVAQIMTNTIQKK--FKVSSTQLLYQSCPYQALTLFIIGPFLD-----GLLTNKNVFAFKYTPYVLFFI 226 (348)
Q Consensus 154 ~~~~l~s~~~~a~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 226 (348)
.+..+...+-.+......|...++ .+..+.+..+..=..-.++.+.....-+ .+........+..+.+. .-+
T Consensus 17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-lk~ 95 (345)
T KOG2234|consen 17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRET-LKV 95 (345)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHH-HHH
Confidence 334444445555555555554432 2456666665544443333332222221 11111111111111123 233
Q ss_pred HHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHh
Q 018956 227 VLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 294 (348)
Q Consensus 227 ~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~ 294 (348)
....++-..-|...+....+.+|.+..+...++...+.+++.++++++++..||...++...|+.+.+
T Consensus 96 ~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 96 SVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 33444555556677888999999999999999999999999999999999999999999999999876
No 93
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.47 E-value=0.05 Score=39.76 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=27.5
Q ss_pred HHHHhhhcccCcchh-hhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHH
Q 018956 238 FSTFLVIGKTSPVTY-QVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIA 286 (348)
Q Consensus 238 ~~~~~~i~~~~a~~~-~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li 286 (348)
+....++|+.+...+ ++...+..+...+.|.++|||++|+.+++|+.++
T Consensus 44 ~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 44 YFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 445667888776655 6667788899999999999999999999999875
No 94
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.64 E-value=0.048 Score=49.36 Aligned_cols=76 Identities=13% Similarity=0.294 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhcccc
Q 018956 225 FIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE 300 (348)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~ 300 (348)
..++-|.+-+..++....++++++....++++...-+++..++.++-+|++|+...++..+.+.|+++.++...++
T Consensus 161 ~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 161 LSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 3344455566678888888999999999999999999999999999999999999999999999999988765544
No 95
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=94.46 E-value=0.11 Score=46.91 Aligned_cols=134 Identities=17% Similarity=0.078 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCchHHHHHHHHHHHHHHHHH-HHHHccccccC------CCCc--chhHH
Q 018956 9 LGTVGALSLSVISSVSIVICNKALIS--SLGFTFATTLTSWHLLVTFCSLH-VALWMKLFEHK------PFDP--RAVMG 77 (348)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~k~~~~--~~~f~~p~~~~~~r~~~~~~~l~-~~~~~~~~~~~------~~~~--~~~~~ 77 (348)
.+.+.+++ +.+....-.+..|.+++ +.+.+ +..+..+..-++.+.+. ++......... ..+. ..+..
T Consensus 163 ~G~i~a~~-s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (316)
T KOG1441|consen 163 FGFISAMI-SNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLL 240 (316)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHH
Confidence 33344444 44444445566677774 34455 67777777777777777 55433211111 1111 12333
Q ss_pred HHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeec
Q 018956 78 FGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV 144 (348)
Q Consensus 78 ~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~ 144 (348)
.+++..+.+...+..+..+++=..++....--+++...++++++++.+..+..|.++.+.|+.+-..
T Consensus 241 ~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 241 NSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 4567777778888899999999999999888888889999999999999999999999999988654
No 96
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=94.29 E-value=0.26 Score=37.20 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHHHHHHHHH
Q 018956 159 LAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNF 238 (348)
Q Consensus 159 ~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (348)
+-+++|+..+-+.||-.++.+........+ -.... .+. ++..+...+.+-..+.
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~~~~~---~~~~~-----Ll~--------------n~~y~ipf~lNq~GSv---- 56 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKASLQLL---QEIKF-----LLL--------------NPKYIIPFLLNQSGSV---- 56 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccchHHHH---HHHHH-----HHH--------------hHHHHHHHHHHHHHHH----
Confidence 346889999999999876432222221111 11111 100 1112233444444442
Q ss_pred HHHhhhcccCcchhhhh-hhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHH
Q 018956 239 STFLVIGKTSPVTYQVL-GHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVL 292 (348)
Q Consensus 239 ~~~~~i~~~~a~~~~~~-~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l 292 (348)
.++..+++.+-..+..+ +.+.-+++.+.++++.+|..+...++|+++++.|+.+
T Consensus 57 ~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 57 LFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 23334566665555444 6788899999998888888899999999999999754
No 97
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.31 E-value=0.44 Score=40.50 Aligned_cols=66 Identities=20% Similarity=0.302 Sum_probs=56.5
Q ss_pred HHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhccccc
Q 018956 236 VNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLES 301 (348)
Q Consensus 236 ~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~~~~~ 301 (348)
.....+.++++.+-.+.-+-...+|+-..+++.++.+.+.+|.......+|++|+.++.+.++|..
T Consensus 98 AMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~ 163 (337)
T KOG1580|consen 98 AMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVG 163 (337)
T ss_pred HHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccC
Confidence 455557888888877777888899999999999999999999999999999999999998655443
No 98
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.06 E-value=3.7 Score=32.65 Aligned_cols=104 Identities=13% Similarity=0.055 Sum_probs=63.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHcccccc-----CCCCcchhHHHHHHHHHHHhhhhhhhcccchhH-HHHHHhhHHHHH
Q 018956 39 TFATTLTSWHLLVTFCSLHVALWMKLFEH-----KPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGF-YQMTKLAIIPCT 112 (348)
Q Consensus 39 ~~p~~~~~~r~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~-~~~l~~~~pi~~ 112 (348)
.+|..-.+..+..+.+++..+...+...+ .+.+|+ .+..|++.+............+.++. ..+.-..+.+..
T Consensus 32 ~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW-~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~g 110 (150)
T COG3238 32 GSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWW-AWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMG 110 (150)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchH-HHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHH
Confidence 45899999999998888777655432211 112333 33334455444444445555555554 344444555555
Q ss_pred HHHHHHhh----ccccchhhHHHHHHHhhhhheee
Q 018956 113 ILLETLFF----RKKFSRNIQLSLVILLVGVGIAT 143 (348)
Q Consensus 113 ~i~~~l~l----~e~~s~~~~~~~~l~~~G~~l~~ 143 (348)
.++..+=+ +++++..++.++++.++|+.+..
T Consensus 111 lliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 111 LLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred HHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 55555433 47789999999999999965543
No 99
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=92.98 E-value=7 Score=35.53 Aligned_cols=220 Identities=15% Similarity=0.118 Sum_probs=122.1
Q ss_pred chhHHHHHHHHHHHhhhhhhhcccchhHH-HHHHhhHHHHHHHHHHHhh-------ccccchhhHHHHHHHhhhhheeec
Q 018956 73 RAVMGFGVLNGISIGLLNLSLGFNSVGFY-QMTKLAIIPCTILLETLFF-------RKKFSRNIQLSLVILLVGVGIATV 144 (348)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~-~~l~~~~pi~~~i~~~l~l-------~e~~s~~~~~~~~l~~~G~~l~~~ 144 (348)
......|++..++...+-.+.+|+..+.. .+...++..+-.++-.++. .++-....++++++.++|+.+...
T Consensus 74 ~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~ 153 (344)
T PF06379_consen 74 FWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGK 153 (344)
T ss_pred HHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhH
Confidence 34455677777777777888899777763 3333344444444433333 334456789999999999999765
Q ss_pred cc-----------cccc-hhHHHHHHHHHHHHHHHHHHHHHHh------hhcCCCHHHHHH--h--hhHHHHHHHHHHHH
Q 018956 145 TD-----------LQLN-VLGSVLSLLAVLTTCVAQIMTNTIQ------KKFKVSSTQLLY--Q--SCPYQALTLFIIGP 202 (348)
Q Consensus 145 ~~-----------~~~~-~~G~~~~l~s~~~~a~~~v~~~~~~------~~~~~~~~~~~~--~--~~~~~~~~l~~~~~ 202 (348)
.+ .+++ ..|++.++++.+..|..+.-.+.-. .+.+.++..... | ...-+.+..+....
T Consensus 154 AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~ 233 (344)
T PF06379_consen 154 AGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCL 233 (344)
T ss_pred HHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHH
Confidence 21 1223 4699999999999999888765421 112334432221 1 11112233333332
Q ss_pred Hhhcccccc---cccccccC--chhHHHHHHHHHHHHHHHHHHHhhhcccC----cchhhhhhhhHHHHHHHHHHHhcCC
Q 018956 203 FLDGLLTNK---NVFAFKYT--PYVLFFIVLSCLISVSVNFSTFLVIGKTS----PVTYQVLGHLKTCLVLAFGYVLLHD 273 (348)
Q Consensus 203 ~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----a~~~~~~~~~~~v~~~v~s~~~~~e 273 (348)
......... .++....+ ..=+......|+.-+...+.+-..-.+.+ .....+.+.+..+++-+.+. +++|
T Consensus 234 ~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl-~lkE 312 (344)
T PF06379_consen 234 ILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGL-ILKE 312 (344)
T ss_pred HHHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 221110110 11111111 12234444455555554444433333333 55667888888888888886 4666
Q ss_pred ------CCchhhhhhHHHHHHHHHHH
Q 018956 274 ------PFSWRNILGILIAVIGMVLY 293 (348)
Q Consensus 274 ------~~t~~~~~G~~li~~g~~l~ 293 (348)
+.-..-+.|+++++.++.+.
T Consensus 313 WKg~s~kt~~vl~~G~~vlI~s~~iv 338 (344)
T PF06379_consen 313 WKGASKKTIRVLVLGIAVLILSVVIV 338 (344)
T ss_pred hccCCcccHHHHHHHHHHHHHHHHHH
Confidence 23345577888888887664
No 100
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=92.47 E-value=2.1 Score=38.72 Aligned_cols=145 Identities=10% Similarity=0.062 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHH
Q 018956 151 VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSC 230 (348)
Q Consensus 151 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (348)
..|+++-.+++++.+.+.+=.||..+ =.++.......+-+.+.+|.....-..++..+... ..+...+....+.|
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkvk~----WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~-~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKVKG----WSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYS-ATPASTLFWTFLFG 80 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhcCC----ccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHH-hCChhHHHHHHHHH
Confidence 57999999999999998887777632 34444333222222223443332221111111111 12223444555555
Q ss_pred HHHHHHHHHHHhhhcccC-cchhhhhhhhHHHHHHHHHHHhcC-------CCCchhhhhhHHHHHHHHHHHhhhcccc
Q 018956 231 LISVSVNFSTFLVIGKTS-PVTYQVLGHLKTCLVLAFGYVLLH-------DPFSWRNILGILIAVIGMVLYSYCCSLE 300 (348)
Q Consensus 231 ~~~~~~~~~~~~~i~~~~-a~~~~~~~~~~~v~~~v~s~~~~~-------e~~t~~~~~G~~li~~g~~l~~~~~~~~ 300 (348)
+.-.......-..+|+.+ +...++.--+..++..++--++.+ ++-....++|.+++++|+.+..+.-.+|
T Consensus 81 ~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~K 158 (344)
T PF06379_consen 81 VLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMK 158 (344)
T ss_pred HHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhh
Confidence 555555555566678866 233444444555555555444432 2333477899999999999877664433
No 101
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=92.15 E-value=0.22 Score=42.67 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHH
Q 018956 152 LGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCL 231 (348)
Q Consensus 152 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (348)
.+++++++=++.|+..-....|. +-+|.+...-+.+-+.++.+....+.. ...+...+..-..+|.
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k~----GG~p~qQ~lGtT~GALifaiiv~~~~~----------p~~T~~~~iv~~isG~ 67 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANKF----GGKPYQQTLGTTLGALIFAIIVFLFVS----------PELTLTIFIVGFISGA 67 (288)
T ss_pred hhHHHHHHHHHHhcccceeeeec----CCChhHhhhhccHHHHHHHHHHheeec----------CccchhhHHHHHHhhh
Confidence 35678888889998877766555 334554444333333333222222211 1123334556666777
Q ss_pred HHHHHHHHHHhhhcccCcchhhhhhh-hHHHHHHHHHHHhcCCCCchhhh----hhHHHHHHHHHHHhh
Q 018956 232 ISVSVNFSTFLVIGKTSPVTYQVLGH-LKTCLVLAFGYVLLHDPFSWRNI----LGILIAVIGMVLYSY 295 (348)
Q Consensus 232 ~~~~~~~~~~~~i~~~~a~~~~~~~~-~~~v~~~v~s~~~~~e~~t~~~~----~G~~li~~g~~l~~~ 295 (348)
+-...+...+++++..+...+..++. .+-+-+.+++.++|||..+..++ +..+++++|+.+..+
T Consensus 68 ~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~ 136 (288)
T COG4975 68 FWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSK 136 (288)
T ss_pred HhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeee
Confidence 77777778899999988888776665 45566789999999998887654 345566666665443
No 102
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=89.57 E-value=0.43 Score=42.20 Aligned_cols=135 Identities=13% Similarity=0.058 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhc-cc----cccccc--ccccCchhHHHHHHHH
Q 018956 158 LLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDG-LL----TNKNVF--AFKYTPYVLFFIVLSC 230 (348)
Q Consensus 158 l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~----~~~~~~--~~~~~~~~~~~~~~~~ 230 (348)
+++.+||+.+-..+|-..++.+.+ +..+|-...+.++...+.-+..| .. ..+..+ -.+.++..+.....+|
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~~--qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG 79 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRLP--QHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG 79 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCcc--ceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh
Confidence 456788888888777776533222 23444444444333222222211 11 111111 1233444556677777
Q ss_pred HHHHHHHHHHHhhhcccCcchhhhh-hhhHHHHHHHHHHHhcCCCCc--hhhhhhHHHHHHHHHHHhh
Q 018956 231 LISVSVNFSTFLVIGKTSPVTYQVL-GHLKTCLVLAFGYVLLHDPFS--WRNILGILIAVIGMVLYSY 295 (348)
Q Consensus 231 ~~~~~~~~~~~~~i~~~~a~~~~~~-~~~~~v~~~v~s~~~~~e~~t--~~~~~G~~li~~g~~l~~~ 295 (348)
++--+.+.....++...+-..+-.+ ..+..++++++-++ .+.+.. ..-+.|.+++++++++-..
T Consensus 80 vvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga~ 146 (336)
T PF07168_consen 80 VVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGAA 146 (336)
T ss_pred HhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHHH
Confidence 7777777777666555542221111 11223334444432 344443 3556688888888776433
No 103
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=89.13 E-value=6.2 Score=33.52 Aligned_cols=123 Identities=15% Similarity=0.068 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHc-cccccCC------CC-cchhHHHHHHHHHHHhhh
Q 018956 18 SVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALWM-KLFEHKP------FD-PRAVMGFGVLNGISIGLL 89 (348)
Q Consensus 18 ~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~~-~~~~~~~------~~-~~~~~~~~~~~~~~~~~~ 89 (348)
-+..+....+.+|....--.|. -..-.++.=+++..++..+... ...++.+ .+ ...+++-|++.....++.
T Consensus 163 NclssaafVL~mrkri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~s 241 (309)
T COG5070 163 NCLSSAAFVLIMRKRIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCS 241 (309)
T ss_pred hhHhHHHHHHHHHHhhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhcc
Confidence 3444555555556554432333 3444557777777666665432 2222221 11 224555677888888888
Q ss_pred hhhhcccchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhhe
Q 018956 90 NLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGI 141 (348)
Q Consensus 90 ~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l 141 (348)
-|..+-++...+.++..+.-...++.+.++++++.+...+.++++++...++
T Consensus 242 aWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~i 293 (309)
T COG5070 242 AWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAI 293 (309)
T ss_pred ceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888776655444
No 104
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=88.31 E-value=0.14 Score=44.41 Aligned_cols=92 Identities=12% Similarity=0.136 Sum_probs=0.0
Q ss_pred cchhHHHHHHhhHHHHHH-HHHHHhhcccc-chhhHHHHHHHhhhhheeecc--ccccchhHHHHHHHHHHHHHHHHHHH
Q 018956 96 NSVGFYQMTKLAIIPCTI-LLETLFFRKKF-SRNIQLSLVILLVGVGIATVT--DLQLNVLGSVLSLLAVLTTCVAQIMT 171 (348)
Q Consensus 96 ~~~~~~~~l~~~~pi~~~-i~~~l~l~e~~-s~~~~~~~~l~~~G~~l~~~~--~~~~~~~G~~~~l~s~~~~a~~~v~~ 171 (348)
.+-+-.+++.++..+.++ ++-..++|+|+ -+.-.+|++++++-+.++..- ..+.-++|+++.+++.+..-.-..|+
T Consensus 47 ~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW~Ym 126 (381)
T PF05297_consen 47 LTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVWFYM 126 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566666655444 34445566664 788888888888777775442 23445678766655544433333333
Q ss_pred HHHhhhcCCCHHHHHHh
Q 018956 172 NTIQKKFKVSSTQLLYQ 188 (348)
Q Consensus 172 ~~~~~~~~~~~~~~~~~ 188 (348)
. +.++++.+-|+++.+
T Consensus 127 ~-lLr~~GAs~WtiLaF 142 (381)
T PF05297_consen 127 W-LLRELGASFWTILAF 142 (381)
T ss_dssp -----------------
T ss_pred H-HHHHhhhHHHHHHHH
Confidence 3 556678888877654
No 105
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.76 E-value=20 Score=32.21 Aligned_cols=136 Identities=11% Similarity=0.137 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHH-HHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHHHHHH
Q 018956 153 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQL-LYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCL 231 (348)
Q Consensus 153 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (348)
....++..+++..+..+..|.....++.+..-. ..++...+.+.+...-.. . ..+.+ .++ +. ...-..-..+
T Consensus 13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~-lv~~~-~l~--~~--~~kk~~P~~~ 85 (314)
T KOG1444|consen 13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-G-LVNFR-PLD--LR--TAKKWFPVSL 85 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-c-eeecC-CcC--hH--HHHHHccHHH
Confidence 456666667777778888888777677665533 345555555554433221 1 11100 111 10 0001111112
Q ss_pred HHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhh
Q 018956 232 ISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 295 (348)
Q Consensus 232 ~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~ 295 (348)
+-++..+.....+++.+-....++....++...+...++++.+++...+.....+++|...+..
T Consensus 86 lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~ 149 (314)
T KOG1444|consen 86 LFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF 149 (314)
T ss_pred HHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc
Confidence 2222233446678999999999999999999999999999999999999999999999877543
No 106
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=86.76 E-value=0.39 Score=39.65 Aligned_cols=62 Identities=23% Similarity=0.376 Sum_probs=55.9
Q ss_pred HHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018956 235 SVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 296 (348)
Q Consensus 235 ~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 296 (348)
+.+|.+..++++.+|+.++.+...+..+..+.++++++|++....++..++.+.|+++..+.
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence 34788888999999999999999999999999999999999999999999999998876643
No 107
>PRK02237 hypothetical protein; Provisional
Probab=85.85 E-value=6.3 Score=29.28 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=40.6
Q ss_pred chhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018956 250 VTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 296 (348)
Q Consensus 250 ~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 296 (348)
-..+..+-+-.+.++++.+.+-+++++...++|..++++|+.+..+.
T Consensus 60 RvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 60 RVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 44567777888899999999999999999999999999999877554
No 108
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.06 E-value=0.24 Score=44.16 Aligned_cols=121 Identities=15% Similarity=0.238 Sum_probs=81.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHhhhHHHHHHHHHHHHHhhcccccccccccccCchhHHHHH
Q 018956 148 QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIV 227 (348)
Q Consensus 148 ~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (348)
+.+..|.++++.+++..+....+.||..++.+. .. . .. ......+...+ .||.-.
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~--~~----------------~--ra----~~gg~~yl~~~-~Ww~G~ 71 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA--SG----------------L--RA----GEGGYGYLKEP-LWWAGM 71 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHHHhh--hc----------------c--cc----cCCCcchhhhH-HHHHHH
Confidence 445779999999999999999988887764211 00 0 00 11111111121 233333
Q ss_pred HHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018956 228 LSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 296 (348)
Q Consensus 228 ~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 296 (348)
+.-..+ ....+.+....++.-.+.++.+..+...+++..+++|+++....+|++++++|.......
T Consensus 72 ltm~vG---ei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 72 LTMIVG---EIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HHHHHH---hHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence 333333 333344566778888899999999999999999999999999999999999997765543
No 109
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=83.71 E-value=5.8 Score=29.38 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=41.2
Q ss_pred chhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhhc
Q 018956 250 VTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC 297 (348)
Q Consensus 250 ~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~~ 297 (348)
-..+..+-+-.+.+++.++.+-+++|+...++|..++++|+.+..+..
T Consensus 58 RvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 58 RVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred hHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 445677778888999999999999999999999999999998876543
No 110
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=75.97 E-value=29 Score=25.68 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=34.0
Q ss_pred hhhcccchhHHHHHHhhHHH-HHHHHHHHhhccccchhhHHHHHHHhhhhhee
Q 018956 91 LSLGFNSVGFYQMTKLAIIP-CTILLETLFFRKKFSRNIQLSLVILLVGVGIA 142 (348)
Q Consensus 91 ~al~~~~~~~~~~l~~~~pi-~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~ 142 (348)
.+.+.-+.+.--+++=...+ ..+.++.+++||++++....+.+..++++.++
T Consensus 54 iG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 54 IGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred hhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 44444444443333322222 23367889999999999999999988887654
No 111
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.37 E-value=31 Score=25.13 Aligned_cols=29 Identities=10% Similarity=0.284 Sum_probs=25.9
Q ss_pred HHHHHhhccccchhhHHHHHHHhhhhhee
Q 018956 114 LLETLFFRKKFSRNIQLSLVILLVGVGIA 142 (348)
Q Consensus 114 i~~~l~l~e~~s~~~~~~~~l~~~G~~l~ 142 (348)
.++.+.+||++++..+.+.+++.+|+.++
T Consensus 85 ~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 85 PFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999888764
No 112
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=71.44 E-value=4.8 Score=29.66 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=47.2
Q ss_pred HHHHHHhhhhhhhcccchhH-HHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheee
Q 018956 81 LNGISIGLLNLSLGFNSVGF-YQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT 143 (348)
Q Consensus 81 ~~~~~~~~~~~al~~~~~~~-~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~ 143 (348)
+.-.+..++++-++..+.+. +-+-+++.-.|+++.+..+..|....+...+..+.+.|+.++.
T Consensus 61 lNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 61 LNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 33344566677788877776 3445566777899999987777778889999999999988764
No 113
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.24 E-value=3.7 Score=35.99 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=47.7
Q ss_pred HHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHH
Q 018956 239 STFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVL 292 (348)
Q Consensus 239 ~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l 292 (348)
.-..++++.+....-+-..+..+++++.++++++++-+..-..++.+|+.|..+
T Consensus 118 fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l 171 (347)
T KOG1442|consen 118 FNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL 171 (347)
T ss_pred ccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhee
Confidence 346788999988888888899999999999999999999999999999998765
No 114
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=70.51 E-value=8.1 Score=34.08 Aligned_cols=57 Identities=25% Similarity=0.375 Sum_probs=47.7
Q ss_pred HHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHH
Q 018956 237 NFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLY 293 (348)
Q Consensus 237 ~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~ 293 (348)
....+..+..++|....+....-.+++-+++.-+++.+++..||.|+..+.+|++..
T Consensus 100 sslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviV 156 (372)
T KOG3912|consen 100 SSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIV 156 (372)
T ss_pred hHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhhee
Confidence 344455677788777777777778899999999999999999999999999998774
No 115
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=70.29 E-value=0.75 Score=39.72 Aligned_cols=65 Identities=20% Similarity=0.374 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018956 232 ISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 296 (348)
Q Consensus 232 ~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 296 (348)
.-.-.|+....+.++++-+....+..-..++..+.+|++++.+..+.++.|.++++.|+++....
T Consensus 87 ~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~s 151 (336)
T KOG2766|consen 87 VDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFS 151 (336)
T ss_pred EeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEe
Confidence 33335777788889999888999999999999999999999999999999999999998876543
No 116
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=67.44 E-value=1.2e+02 Score=29.17 Aligned_cols=24 Identities=4% Similarity=0.025 Sum_probs=19.8
Q ss_pred CchhhhhhHHHHHHHHHHHhhhcc
Q 018956 275 FSWRNILGILIAVIGMVLYSYCCS 298 (348)
Q Consensus 275 ~t~~~~~G~~li~~g~~l~~~~~~ 298 (348)
++..|++++.++++|++++.+.++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 788999999999999887765544
No 117
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=67.01 E-value=1.1e+02 Score=29.85 Aligned_cols=21 Identities=10% Similarity=-0.070 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 018956 7 FQLGTVGALSLSVISSVSIVI 27 (348)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~ 27 (348)
.+...+..++.|.+....+.+
T Consensus 91 ~K~vL~l~~l~Wsl~t~L~~f 111 (511)
T TIGR00806 91 YKPVLVLQALSFVCVWLLLLL 111 (511)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666655444
No 118
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=64.96 E-value=98 Score=27.18 Aligned_cols=101 Identities=14% Similarity=-0.107 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHH-HHHHH-
Q 018956 41 ATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTI-LLETL- 118 (348)
Q Consensus 41 p~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~-i~~~l- 118 (348)
+++..++......+..++....+.. +.-.+..++.|.+.+.++.+..-..+.+..+....+-++.-+.+- ..+++
T Consensus 27 g~~fQw~~~~~i~~~g~~v~~~~~~---p~f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfG 103 (254)
T PF07857_consen 27 GFFFQWVMCSGIFLVGLVVNLILGF---PPFYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFG 103 (254)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCC---CcceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhce
Confidence 6666666666555555554433221 122344455567888888888899999999999999988666655 34433
Q ss_pred hhccc---c--chhhHHHHHHHhhhhheeec
Q 018956 119 FFRKK---F--SRNIQLSLVILLVGVGIATV 144 (348)
Q Consensus 119 ~l~e~---~--s~~~~~~~~l~~~G~~l~~~ 144 (348)
+++.+ + ....+++++++++|..+...
T Consensus 104 lFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~f 134 (254)
T PF07857_consen 104 LFGLDPQVPSSPWLNYIGVALVLVSGIIFSF 134 (254)
T ss_pred eccccccccchhHHHHHHHHHHHHHHHheee
Confidence 34332 2 45578888888888887654
No 119
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=63.67 E-value=10 Score=25.40 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=18.4
Q ss_pred hhhhHHHHHHHHHHHhhhccccccc
Q 018956 279 NILGILIAVIGMVLYSYCCSLESQQ 303 (348)
Q Consensus 279 ~~~G~~li~~g~~l~~~~~~~~~~~ 303 (348)
-++++.++++|.++|...++++..+
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~~~q 30 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKKTTQ 30 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccC
Confidence 4578888899999998876655443
No 120
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=63.59 E-value=64 Score=30.85 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=8.5
Q ss_pred hhhhHHHHHHHHHHHhh
Q 018956 279 NILGILIAVIGMVLYSY 295 (348)
Q Consensus 279 ~~~G~~li~~g~~l~~~ 295 (348)
..++.+++++.++.|..
T Consensus 178 F~~a~~v~l~~i~~~~~ 194 (437)
T TIGR00939 178 FGTPCVVQLICIVCYLL 194 (437)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555543
No 121
>PRK02237 hypothetical protein; Provisional
Probab=59.35 E-value=72 Score=23.81 Aligned_cols=47 Identities=15% Similarity=0.034 Sum_probs=34.8
Q ss_pred hhHHHHHHhhHHH-HHHHHHHHhhccccchhhHHHHHHHhhhhheeec
Q 018956 98 VGFYQMTKLAIIP-CTILLETLFFRKKFSRNIQLSLVILLVGVGIATV 144 (348)
Q Consensus 98 ~~~~~~l~~~~pi-~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~ 144 (348)
.+-+.......-| ...+..+.+.|+|+++..+.+..++++|+.++.+
T Consensus 58 ~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 58 FGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 3444434443334 4447899999999999999999999999987644
No 122
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=59.05 E-value=12 Score=25.97 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=5.0
Q ss_pred hhhHHHHHHHH
Q 018956 280 ILGILIAVIGM 290 (348)
Q Consensus 280 ~~G~~li~~g~ 290 (348)
++|+.++++..
T Consensus 9 i~Gm~iVF~~L 19 (79)
T PF04277_consen 9 IIGMGIVFLVL 19 (79)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 123
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=58.59 E-value=34 Score=25.28 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=37.9
Q ss_pred hhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018956 251 TYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 296 (348)
Q Consensus 251 ~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 296 (348)
..+..+-+-.+.+.++.+++=+.+++...++|..++++|+.+..+.
T Consensus 60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 3456666778888889988889999999999999999998776554
No 124
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=57.89 E-value=75 Score=23.52 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhccccchhhHHHHHHHhhhhheeecc
Q 018956 109 IPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT 145 (348)
Q Consensus 109 pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~ 145 (348)
.+...+..++..|.|+++..|.+..++++|+.++.+.
T Consensus 69 I~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 69 IAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 3455568889999999999999999999998887653
No 125
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=56.48 E-value=14 Score=27.26 Aligned_cols=28 Identities=18% Similarity=0.449 Sum_probs=24.1
Q ss_pred HHHHHHhcCCCCchhhhhhHHHHHHHHH
Q 018956 264 LAFGYVLLHDPFSWRNILGILIAVIGMV 291 (348)
Q Consensus 264 ~v~s~~~~~e~~t~~~~~G~~li~~g~~ 291 (348)
+.++.+.++|++++..+.|..+++.++.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~ 104 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVY 104 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhh
Confidence 4578889999999999999999887754
No 126
>PTZ00359 hypothetical protein; Provisional
Probab=54.56 E-value=1.9e+02 Score=27.16 Aligned_cols=19 Identities=16% Similarity=0.065 Sum_probs=11.1
Q ss_pred CchhhhhhHHHHHHHHHHH
Q 018956 275 FSWRNILGILIAVIGMVLY 293 (348)
Q Consensus 275 ~t~~~~~G~~li~~g~~l~ 293 (348)
+...-+.-..+++.+..++
T Consensus 357 ~~~~ai~vYg~v~fv~~l~ 375 (443)
T PTZ00359 357 IASIAIFVYGFVVFVLMLI 375 (443)
T ss_pred ceeehhHHHHHHHHHHHHH
Confidence 4455566666666665554
No 127
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=54.02 E-value=90 Score=23.26 Aligned_cols=37 Identities=27% Similarity=0.204 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeec
Q 018956 108 IIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV 144 (348)
Q Consensus 108 ~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~ 144 (348)
..+...+..+.+.|+|+++..+.+..++++|+.++.+
T Consensus 67 fI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 67 FIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred HHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence 3445557889999999999999999999999998764
No 128
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=52.00 E-value=55 Score=29.45 Aligned_cols=72 Identities=15% Similarity=0.285 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018956 225 FIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 296 (348)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 296 (348)
.+.-.++.+..=.-..++..++..-...++.....+++..++|.++-=|++++.-..-..+|-+|+.++.+.
T Consensus 86 ~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~K 157 (349)
T KOG1443|consen 86 RLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYK 157 (349)
T ss_pred HhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEec
Confidence 344455555443344466677777777777777778888888887777888877777666777776666553
No 129
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=49.25 E-value=1.4e+02 Score=28.37 Aligned_cols=15 Identities=13% Similarity=-0.108 Sum_probs=6.6
Q ss_pred hhhhhhHHHHHHHHH
Q 018956 277 WRNILGILIAVIGMV 291 (348)
Q Consensus 277 ~~~~~G~~li~~g~~ 291 (348)
...+++.++.+++.+
T Consensus 401 ~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 401 YIFYASGSIVVSAGL 415 (455)
T ss_pred hHHHHhhHHHHHHHH
Confidence 333444444444444
No 130
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=48.35 E-value=1.2e+02 Score=29.84 Aligned_cols=18 Identities=6% Similarity=0.108 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHhhhcc
Q 018956 281 LGILIAVIGMVLYSYCCS 298 (348)
Q Consensus 281 ~G~~li~~g~~l~~~~~~ 298 (348)
+++.++++..+.+++..+
T Consensus 534 iAcl~~l~~~~~iq~~l~ 551 (618)
T KOG3762|consen 534 IACLVTLALFISIQLLLK 551 (618)
T ss_pred HHHHHHHHHHHHhhhhhc
Confidence 344444455555555433
No 131
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=47.85 E-value=36 Score=28.62 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhhhcccc
Q 018956 283 ILIAVIGMVLYSYCCSLE 300 (348)
Q Consensus 283 ~~li~~g~~l~~~~~~~~ 300 (348)
+.+++++...|...++|.
T Consensus 112 lLla~~~~~~Y~~~~Rrs 129 (202)
T PF06365_consen 112 LLLAILLGAGYCCHQRRS 129 (202)
T ss_pred HHHHHHHHHHHHhhhhcc
Confidence 556666666666655544
No 132
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=47.50 E-value=80 Score=27.95 Aligned_cols=50 Identities=22% Similarity=0.281 Sum_probs=39.4
Q ss_pred chhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccc
Q 018956 97 SVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD 146 (348)
Q Consensus 97 ~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~ 146 (348)
.+..+..+...---.+.+++++++.++++-+...+.++++.|+.+-..+.
T Consensus 285 GA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 285 GALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred chhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 34444444455566788999999999999999999999999999966554
No 133
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=47.45 E-value=30 Score=27.99 Aligned_cols=8 Identities=38% Similarity=0.547 Sum_probs=5.4
Q ss_pred CCCCCCcc
Q 018956 316 KEGETDPL 323 (348)
Q Consensus 316 ~~~~~~~~ 323 (348)
++.|..|+
T Consensus 137 ~~~Em~pL 144 (163)
T PF06679_consen 137 ENVEMAPL 144 (163)
T ss_pred ccceeccc
Confidence 55677777
No 134
>PHA03049 IMV membrane protein; Provisional
Probab=47.13 E-value=25 Score=23.47 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=17.0
Q ss_pred hhhhHHHHHHHHHHHhhhcccccc
Q 018956 279 NILGILIAVIGMVLYSYCCSLESQ 302 (348)
Q Consensus 279 ~~~G~~li~~g~~l~~~~~~~~~~ 302 (348)
-++++.++++|.++|-..++++..
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk~~~ 29 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKKTTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc
Confidence 356777888888888877665443
No 135
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=46.47 E-value=2.5e+02 Score=27.36 Aligned_cols=15 Identities=13% Similarity=0.286 Sum_probs=7.9
Q ss_pred HHHHHHHHhhhcccc
Q 018956 286 AVIGMVLYSYCCSLE 300 (348)
Q Consensus 286 i~~g~~l~~~~~~~~ 300 (348)
++++.+.|..+++++
T Consensus 450 ~~~~~~~y~~~~~~~ 464 (507)
T TIGR00910 450 AALPFIIYALHDKKG 464 (507)
T ss_pred HHHHHHHHHHhcccc
Confidence 335556666555443
No 136
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=46.15 E-value=21 Score=30.06 Aligned_cols=20 Identities=20% Similarity=0.131 Sum_probs=10.5
Q ss_pred ccCCCCCCCccccccccCCC
Q 018956 325 NAEKGTGDGVAKAPAWNSNK 344 (348)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~ 344 (348)
.++++++|+-++-..+|+|.
T Consensus 248 ~~~eeeDDeYNkPLDPnSDD 267 (288)
T KOG0847|consen 248 APSEEEDDEYNKPLDPNSDD 267 (288)
T ss_pred CCccccccccCCCCCCCcch
Confidence 44444555555555555553
No 137
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=44.51 E-value=1.1e+02 Score=27.18 Aligned_cols=133 Identities=8% Similarity=-0.033 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHH--------ccccccCCCCc-chhHHHHH
Q 018956 10 GTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSWHLLVTFCSLHVALW--------MKLFEHKPFDP-RAVMGFGV 80 (348)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~r~~~~~~~l~~~~~--------~~~~~~~~~~~-~~~~~~~~ 80 (348)
..++.+.+-...+.-|.+.+.-..+.+|=+ |--..++--+++...+..... ..+.+.-..+. .-.++...
T Consensus 164 iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh-~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~ 242 (330)
T KOG1583|consen 164 IGIALLVFALLLSAYMGIYQETTYQKYGKH-WKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMW 242 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHH
Confidence 334444455566666778888888776644 666666766666555444321 01111000111 11122222
Q ss_pred HHHH-HHhhhhhhhcc-------cchhHHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheee
Q 018956 81 LNGI-SIGLLNLSLGF-------NSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT 143 (348)
Q Consensus 81 ~~~~-~~~~~~~al~~-------~~~~~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~ 143 (348)
.|.+ +...++...+. .++=+.++....-=.+..+++.+.++.+++++.|+|..+.++|.++..
T Consensus 243 ~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 243 VYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred HHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 2222 12222222221 111123333344467788899999999999999999999999998853
No 138
>PRK15432 autoinducer 2 ABC transporter permease LsrC; Provisional
Probab=43.69 E-value=74 Score=29.35 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=15.1
Q ss_pred chhhhhhHHHHHHHHHHHhhhccc
Q 018956 276 SWRNILGILIAVIGMVLYSYCCSL 299 (348)
Q Consensus 276 t~~~~~G~~li~~g~~l~~~~~~~ 299 (348)
.+.+++..+++++.+......+++
T Consensus 287 ~~~~ii~g~lll~vl~~~~~~~~~ 310 (344)
T PRK15432 287 WWNDFIAGLVLLGVLVFDGRLRCA 310 (344)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHh
Confidence 466777777777766665544443
No 139
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=43.30 E-value=4e+02 Score=27.67 Aligned_cols=43 Identities=14% Similarity=0.003 Sum_probs=31.9
Q ss_pred HHHHHHhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhhee
Q 018956 100 FYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIA 142 (348)
Q Consensus 100 ~~~~l~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~ 142 (348)
-+.++..+.|+-.+.++.+...+|.+...+.+.+..++|.+-+
T Consensus 12 Ra~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 12 RAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred HHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 4567788899999988888877776566666766677776644
No 140
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=39.46 E-value=2.3e+02 Score=23.80 Aligned_cols=11 Identities=18% Similarity=0.606 Sum_probs=5.5
Q ss_pred HHHHhhccccc
Q 018956 115 LETLFFRKKFS 125 (348)
Q Consensus 115 ~~~l~l~e~~s 125 (348)
....++++|++
T Consensus 192 ~~~~~lkkk~~ 202 (206)
T PF06570_consen 192 ALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHhC
Confidence 33445555554
No 141
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=39.10 E-value=47 Score=26.18 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=19.9
Q ss_pred hcccCcchhhhhhhhHHHHHHHHHHHhc
Q 018956 244 IGKTSPVTYQVLGHLKTCLVLAFGYVLL 271 (348)
Q Consensus 244 i~~~~a~~~~~~~~~~~v~~~v~s~~~~ 271 (348)
+..-+.+..+.+.|+-|++.++.+.+++
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~La 96 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAILA 96 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777788888888777766654
No 142
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=39.02 E-value=2.3e+02 Score=23.72 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=15.4
Q ss_pred HHHHHhcCCCCchhhhhhHHHHHHHH
Q 018956 265 AFGYVLLHDPFSWRNILGILIAVIGM 290 (348)
Q Consensus 265 v~s~~~~~e~~t~~~~~G~~li~~g~ 290 (348)
.+|..+|++-.=+..++|..+.+.=+
T Consensus 134 ~iG~~L~t~y~l~fe~~silLLvAmI 159 (198)
T PRK06638 134 AIGILLFTDYLLPFELASVLLLVAMV 159 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666766554433
No 143
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=38.89 E-value=3.9e+02 Score=26.27 Aligned_cols=18 Identities=17% Similarity=0.065 Sum_probs=9.0
Q ss_pred hhhhhhhHHHHHHHHHHH
Q 018956 252 YQVLGHLKTCLVLAFGYV 269 (348)
Q Consensus 252 ~~~~~~~~~v~~~v~s~~ 269 (348)
..+.....|+-+.+.|.+
T Consensus 349 ~~~~~g~~~lGsll~G~l 366 (524)
T PF05977_consen 349 QMVFFGGMPLGSLLWGFL 366 (524)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444445555566654
No 144
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=38.36 E-value=9 Score=33.65 Aligned_cols=58 Identities=12% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHhhhcccCcchhhhhhhhHHH----HHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018956 239 STFLVIGKTSPVTYQVLGHLKTC----LVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 296 (348)
Q Consensus 239 ~~~~~i~~~~a~~~~~~~~~~~v----~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 296 (348)
++.+.+++.+|+..+++...--. +-.++++++-...+|...=+=-.+.+++++++.+.
T Consensus 124 ~Ym~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFlaiLIWlY~ 185 (381)
T PF05297_consen 124 FYMWLLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFLAILIWLYV 185 (381)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33568899998887776553322 22334443334445543222224556666655443
No 145
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=38.00 E-value=34 Score=24.34 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=22.1
Q ss_pred CCCchhhhhhHHHHHHHHHHHhhhcccc
Q 018956 273 DPFSWRNILGILIAVIGMVLYSYCCSLE 300 (348)
Q Consensus 273 e~~t~~~~~G~~li~~g~~l~~~~~~~~ 300 (348)
-.+++..++|.++++.|..+|..+..++
T Consensus 3 ~~~~~~~iLgi~l~~~~~~Ly~lr~~~P 30 (84)
T PF07444_consen 3 FGFGPSYILGIILILGGLALYFLRFFRP 30 (84)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 3578889999999999999997654433
No 146
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=36.66 E-value=26 Score=26.89 Aligned_cols=9 Identities=11% Similarity=0.168 Sum_probs=3.6
Q ss_pred HHHHhhhcc
Q 018956 290 MVLYSYCCS 298 (348)
Q Consensus 290 ~~l~~~~~~ 298 (348)
++.|..+|+
T Consensus 83 li~y~irR~ 91 (122)
T PF01102_consen 83 LISYCIRRL 91 (122)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444333
No 147
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=35.96 E-value=2.1e+02 Score=22.24 Aligned_cols=35 Identities=17% Similarity=0.364 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHh
Q 018956 259 KTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 294 (348)
Q Consensus 259 ~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~ 294 (348)
|-++-+++|.+.+++ -....++|..+.+.|++...
T Consensus 70 RGlfyif~G~l~~~~-~~~~~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 70 RGLFYIFLGTLCLGQ-SILSIIIGLLLFLVGVIYII 104 (136)
T ss_pred HHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHH
Confidence 344556677777766 33455667777777765543
No 148
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=35.09 E-value=1.1e+02 Score=23.63 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHH
Q 018956 8 QLGTVGALSLSVISSVSIVICNKALISSLGFTFATTLTSW 47 (348)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~f~~p~~~~~~ 47 (348)
-+..+..++.++++++...++-|-+..... +||++++-.
T Consensus 55 ~~~L~v~~vv~V~s~v~N~VL~K~~~~~m~-NY~fFL~Ql 93 (130)
T PF08627_consen 55 NFKLLVYVVVYVVSGVINRVLYKKMTNPMK-NYPFFLNQL 93 (130)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHh
Confidence 456677888889999999999998887532 446666544
No 149
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.79 E-value=1.7e+02 Score=21.89 Aligned_cols=38 Identities=13% Similarity=0.043 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCC-CCchhhhhhHHHHHHHHHHHhhhc
Q 018956 260 TCLVLAFGYVLLHD-PFSWRNILGILIAVIGMVLYSYCC 297 (348)
Q Consensus 260 ~v~~~v~s~~~~~e-~~t~~~~~G~~li~~g~~l~~~~~ 297 (348)
.++.+.++|++=+- .-+++.+++..++-.|....+..+
T Consensus 56 ilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv~R 94 (116)
T COG5336 56 ILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVLR 94 (116)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 34555566543211 334566665555555555555433
No 150
>PF06396 AGTRAP: Angiotensin II, type I receptor-associated protein (AGTRAP); InterPro: IPR009436 This family consists of several angiotensin II, type I receptor-associated protein (AGTRAP) sequences. AGTRAP is known to interact specifically with the C-terminal cytoplasmic region of the angiotensin II type 1 (AT(1)) receptor to regulate different aspects of AT(1) receptor physiology. The function of this family is unclear.
Probab=34.06 E-value=2.6e+02 Score=22.72 Aligned_cols=32 Identities=6% Similarity=0.154 Sum_probs=17.8
Q ss_pred HhhhcccCcchhhhhhhhHHHHHHHHHHHhcC
Q 018956 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLH 272 (348)
Q Consensus 241 ~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~ 272 (348)
+|++...++...-.+...-.+++++++++.++
T Consensus 44 vWAi~~~dSidav~~~l~~~~~sil~Dii~i~ 75 (162)
T PF06396_consen 44 VWAIHQRDSIDAVQMALVGLVFSILFDIIHIG 75 (162)
T ss_pred HHHHhccCchHHHHHHHHHHHHHHHHHHheeE
Confidence 34444444454444445556677777777543
No 151
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=32.40 E-value=4e+02 Score=24.48 Aligned_cols=11 Identities=9% Similarity=0.283 Sum_probs=4.3
Q ss_pred HHHHHHHHHhh
Q 018956 285 IAVIGMVLYSY 295 (348)
Q Consensus 285 li~~g~~l~~~ 295 (348)
+++.-.++|..
T Consensus 236 l~~~~~l~~~l 246 (340)
T PF12794_consen 236 LLLGWLLVYQL 246 (340)
T ss_pred HHHHHHHHHHH
Confidence 33333444433
No 152
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=30.63 E-value=3.7e+02 Score=23.51 Aligned_cols=44 Identities=11% Similarity=-0.014 Sum_probs=29.1
Q ss_pred HhhhcccCcchhhhhhhhHHHHHHHHHHHhcCCCCchhhhhhHH
Q 018956 241 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGIL 284 (348)
Q Consensus 241 ~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~~~e~~t~~~~~G~~ 284 (348)
..+-++.++.....-+.++-.+.++-..+++.-..+...-.+++
T Consensus 113 ~vcy~~gp~~~~rs~~~v~W~Lqligl~lI~~ss~~~~~a~~~i 156 (249)
T PF10225_consen 113 AVCYRYGPPVDPRSRNFVKWALQLIGLVLIYFSSQDPEFAFAAI 156 (249)
T ss_pred HhhcccCCCccHhHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 34456788888888888888888877777775544444433433
No 153
>PF15102 TMEM154: TMEM154 protein family
Probab=30.54 E-value=61 Score=25.64 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHhhhccccc
Q 018956 282 GILIAVIGMVLYSYCCSLES 301 (348)
Q Consensus 282 G~~li~~g~~l~~~~~~~~~ 301 (348)
+.++++..++++.+.|+|+.
T Consensus 68 LvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHheeEEeeccc
Confidence 33444444555555544443
No 154
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=30.17 E-value=3.9e+02 Score=23.65 Aligned_cols=34 Identities=9% Similarity=0.230 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHhhhcCCCHHHHH
Q 018956 153 GSVLSLLAVLTTCVAQIM---TNTIQKKFKVSSTQLL 186 (348)
Q Consensus 153 G~~~~l~s~~~~a~~~v~---~~~~~~~~~~~~~~~~ 186 (348)
|.+...+..+.......+ .+|..++.+....+..
T Consensus 103 a~Lg~~l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~ 139 (265)
T TIGR00822 103 AAAGQVLTIFVRTITVLFQHAADKAAKEANTAAISRL 139 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHH
Confidence 333333333444443333 4444444444444333
No 155
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=30.14 E-value=5e+02 Score=24.86 Aligned_cols=20 Identities=5% Similarity=-0.104 Sum_probs=8.4
Q ss_pred hhhhhhHHHHHHHHHHHhhh
Q 018956 277 WRNILGILIAVIGMVLYSYC 296 (348)
Q Consensus 277 ~~~~~G~~li~~g~~l~~~~ 296 (348)
...++..++.++|.++....
T Consensus 413 ~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 413 TGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred hHHHHHHHHHHHHHHHHHhe
Confidence 33333333444444444443
No 156
>PRK11715 inner membrane protein; Provisional
Probab=29.45 E-value=3.8e+02 Score=25.65 Aligned_cols=123 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHccccccCCCCcchhHHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHH-HHHHHhhccccc
Q 018956 47 WHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTI-LLETLFFRKKFS 125 (348)
Q Consensus 47 ~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~-i~~~l~l~e~~s 125 (348)
|-.++-.+.+..+..+...++.+.++-.+++.|+-.++-..+...=-+|++-..+.++-+...+... +...-++|.+-.
T Consensus 306 YgiLFI~LTF~~fFlfE~~~~~~iHpiQYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~a~v~li~~Y~~~vl~~~k~ 385 (436)
T PRK11715 306 YAILFIALTFAAFFLFELLKKLRIHPVQYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAALACVLLIGFYLSAVLRSWKR 385 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceecHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchH
Q ss_pred hhhHHHHHHHhhhhheeeccccccchh---HHHHHHHHHHHHHHHHH
Q 018956 126 RNIQLSLVILLVGVGIATVTDLQLNVL---GSVLSLLAVLTTCVAQI 169 (348)
Q Consensus 126 ~~~~~~~~l~~~G~~l~~~~~~~~~~~---G~~~~l~s~~~~a~~~v 169 (348)
..-..+++.++=|++.......+...+ ..++++++.+.+..+.+
T Consensus 386 g~~~~~~L~~LYg~Ly~lLq~EDyALL~GSllLF~~La~vM~~TR~i 432 (436)
T PRK11715 386 GLLFAAALAALYGVLYGLLQSEDYALLLGSLLLFAVLALVMFLTRRI 432 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHheeecc
No 157
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=28.89 E-value=92 Score=22.67 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=4.8
Q ss_pred hHHHHHHHHHH
Q 018956 282 GILIAVIGMVL 292 (348)
Q Consensus 282 G~~li~~g~~l 292 (348)
+.+++++|+.+
T Consensus 45 ai~MIf~Gi~l 55 (96)
T PF07214_consen 45 AIAMIFVGIGL 55 (96)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 158
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=28.70 E-value=97 Score=26.72 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=15.5
Q ss_pred CCchhhhhhHHHHHHHHHHHh
Q 018956 274 PFSWRNILGILIAVIGMVLYS 294 (348)
Q Consensus 274 ~~t~~~~~G~~li~~g~~l~~ 294 (348)
......|++.+++++|.++..
T Consensus 218 y~n~q~wLwwi~~vlG~ll~l 238 (262)
T KOG4812|consen 218 YFNGQYWLWWIFLVLGLLLFL 238 (262)
T ss_pred ccccchHHHHHHHHHHHHHHH
Confidence 345578888888888887743
No 159
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.45 E-value=1.3e+02 Score=22.00 Aligned_cols=40 Identities=15% Similarity=0.468 Sum_probs=29.7
Q ss_pred hhhhhhHHHHH----HHHHHHhcCCCCchhhhhhHHHHHHHHHH
Q 018956 253 QVLGHLKTCLV----LAFGYVLLHDPFSWRNILGILIAVIGMVL 292 (348)
Q Consensus 253 ~~~~~~~~v~~----~v~s~~~~~e~~t~~~~~G~~li~~g~~l 292 (348)
+-+..++.+++ ..+|.+.++|++.+..+.|..++..|+..
T Consensus 69 ~QLK~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~f 112 (116)
T COG3169 69 AQLKTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYF 112 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 33444555544 34788889999999999999888887654
No 160
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=27.70 E-value=4.8e+02 Score=24.96 Aligned_cols=123 Identities=13% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHccccccCCCCcchhHHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHH-HHHHHhhccccc
Q 018956 47 WHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTI-LLETLFFRKKFS 125 (348)
Q Consensus 47 ~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~-i~~~l~l~e~~s 125 (348)
|-.++-.+.+..+......++.+.++-.+++.|+..++...+...=-+|++-..+.++-+...+... ....-++|.+-.
T Consensus 300 YgiLFI~LTF~~fflfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi~F~~AYliAa~a~i~Li~~Y~~~vl~~~k~ 379 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFELLSKLRIHPIQYLLVGLALVLFYLLLLSLSEHIGFNLAYLIAALACIGLISLYLSSVLKSWKR 379 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchH
Q ss_pred hhhHHHHHHHhhhhheeeccccccchh---HHHHHHHHHHHHHHHHH
Q 018956 126 RNIQLSLVILLVGVGIATVTDLQLNVL---GSVLSLLAVLTTCVAQI 169 (348)
Q Consensus 126 ~~~~~~~~l~~~G~~l~~~~~~~~~~~---G~~~~l~s~~~~a~~~v 169 (348)
..-..+++.++=|++.......+...+ ..++++++.+.+..+.+
T Consensus 380 ~~~~~~~L~~LY~~Ly~lLq~EdyALL~GSl~LF~iLa~vM~~TRki 426 (430)
T PF06123_consen 380 GLIFAGLLAALYGFLYVLLQSEDYALLMGSLLLFIILALVMYLTRKI 426 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHheeecc
No 161
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=26.79 E-value=5.5e+02 Score=24.30 Aligned_cols=20 Identities=15% Similarity=0.476 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHHhhhccc
Q 018956 280 ILGILIAVIGMVLYSYCCSL 299 (348)
Q Consensus 280 ~~G~~li~~g~~l~~~~~~~ 299 (348)
+.+..++++|..+|-..+++
T Consensus 418 ~~~~~~~~~g~~~y~~~~~~ 437 (445)
T PRK11357 418 ICAVIVIATGLPAYAFWAKR 437 (445)
T ss_pred HHHHHHHHHhhhHHhheech
Confidence 35788888999888765554
No 162
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=26.17 E-value=39 Score=24.24 Aligned_cols=20 Identities=20% Similarity=0.541 Sum_probs=14.3
Q ss_pred hhhhhhHHHHHHHHHHHhhh
Q 018956 277 WRNILGILIAVIGMVLYSYC 296 (348)
Q Consensus 277 ~~~~~G~~li~~g~~l~~~~ 296 (348)
...++|..+.++|..++...
T Consensus 4 ~~Fl~~l~lliig~~~~v~~ 23 (92)
T PF13038_consen 4 ILFLVGLILLIIGGFLFVFQ 23 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44577888888888776554
No 163
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=26.09 E-value=1.3e+02 Score=19.74 Aligned_cols=11 Identities=18% Similarity=0.522 Sum_probs=4.4
Q ss_pred CCCCCCCCccc
Q 018956 314 QVKEGETDPLI 324 (348)
Q Consensus 314 ~~~~~~~~~~~ 324 (348)
++.+.+.+|+.
T Consensus 34 DEdd~dde~l~ 44 (65)
T PF10731_consen 34 DEDDDDDEPLK 44 (65)
T ss_pred CcccCcccccc
Confidence 33443344443
No 164
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=25.75 E-value=1.5e+02 Score=27.39 Aligned_cols=8 Identities=38% Similarity=0.530 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 018956 260 TCLVLAFG 267 (348)
Q Consensus 260 ~v~~~v~s 267 (348)
|++..+.+
T Consensus 112 pi~~~l~g 119 (385)
T PF03547_consen 112 PILQALFG 119 (385)
T ss_pred HHHHHHhc
Confidence 44444444
No 165
>PRK02463 OxaA-like protein precursor; Provisional
Probab=25.41 E-value=5.1e+02 Score=23.47 Aligned_cols=13 Identities=15% Similarity=0.044 Sum_probs=8.6
Q ss_pred HHHhhhcCCCHHH
Q 018956 172 NTIQKKFKVSSTQ 184 (348)
Q Consensus 172 ~~~~~~~~~~~~~ 184 (348)
.++.++++++|+.
T Consensus 124 ~~lyke~ginp~~ 136 (307)
T PRK02463 124 MAAQRENGISMLG 136 (307)
T ss_pred HHHHHHcCCCCcc
Confidence 3445667888875
No 166
>COG0387 ChaA Ca2+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=25.23 E-value=5.6e+02 Score=23.87 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=11.0
Q ss_pred CCchhhhhhHHHHHHHHHH
Q 018956 274 PFSWRNILGILIAVIGMVL 292 (348)
Q Consensus 274 ~~t~~~~~G~~li~~g~~l 292 (348)
..+..+-.+..++.++.+.
T Consensus 162 ~~~~~~s~~~avv~i~~Y~ 180 (368)
T COG0387 162 NFSLGQSLFVAVVLIALYG 180 (368)
T ss_pred cchHhHHHHHHHHHHHHHH
Confidence 4445666666666665544
No 167
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=24.78 E-value=2.8e+02 Score=20.15 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=34.1
Q ss_pred HHhhhcccCcchhhhhhhhHHHHHHHHHHHh---cCC-CCchhhhhhHHHHHHHHHHHhhhcc
Q 018956 240 TFLVIGKTSPVTYQVLGHLKTCLVLAFGYVL---LHD-PFSWRNILGILIAVIGMVLYSYCCS 298 (348)
Q Consensus 240 ~~~~i~~~~a~~~~~~~~~~~v~~~v~s~~~---~~e-~~t~~~~~G~~li~~g~~l~~~~~~ 298 (348)
...++|++.-...-.+-.+.-+++++++.+. .++ .+-...|.|...=+.+..++..-.+
T Consensus 21 lVq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~ 83 (93)
T PF06946_consen 21 LVQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTN 83 (93)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHh
Confidence 3566777765555555556666666665542 232 2333457777666666666655444
No 168
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=24.05 E-value=66 Score=28.47 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=18.4
Q ss_pred CchhhhhhHHHHHHHHHHHhhh
Q 018956 275 FSWRNILGILIAVIGMVLYSYC 296 (348)
Q Consensus 275 ~t~~~~~G~~li~~g~~l~~~~ 296 (348)
+|..|+++..++++|+.++.+.
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~ 256 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYR 256 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999998776443
No 169
>PF15471 TMEM171: Transmembrane protein family 171
Probab=23.98 E-value=1.7e+02 Score=25.79 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=17.7
Q ss_pred hhhhhhHHHHHHHHHHHhhhcc
Q 018956 277 WRNILGILIAVIGMVLYSYCCS 298 (348)
Q Consensus 277 ~~~~~G~~li~~g~~l~~~~~~ 298 (348)
..|++|=.++++|...+..+..
T Consensus 161 slQImGPlIVl~GLCFFVVAHv 182 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVAHV 182 (319)
T ss_pred ehhhhhhHHHHHhhhhhheeee
Confidence 4799999999999888766543
No 170
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=23.46 E-value=6.6e+02 Score=24.01 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=8.3
Q ss_pred HHHHHHHhhcccc
Q 018956 112 TILLETLFFRKKF 124 (348)
Q Consensus 112 ~~i~~~l~l~e~~ 124 (348)
...++.++.+-|.
T Consensus 7 ~~~~~~~~~g~~~ 19 (433)
T PRK09412 7 IIVLLAIFLGARL 19 (433)
T ss_pred HHHHHHHHHhHhh
Confidence 4456667777666
No 171
>PRK09776 putative diguanylate cyclase; Provisional
Probab=23.26 E-value=9.5e+02 Score=25.80 Aligned_cols=22 Identities=5% Similarity=0.243 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018956 153 GSVLSLLAVLTTCVAQIMTNTI 174 (348)
Q Consensus 153 G~~~~l~s~~~~a~~~v~~~~~ 174 (348)
...+++++.+...+...+.++.
T Consensus 71 ~~~~~~~~~~~~~~~~~ll~~~ 92 (1092)
T PRK09776 71 NLTWTTINLVEAVVGAVLLRKL 92 (1092)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444333343444443
No 172
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=23.02 E-value=87 Score=24.30 Aligned_cols=26 Identities=31% Similarity=0.176 Sum_probs=16.1
Q ss_pred ccCcchhhhhhhhHHHHHHHHHHHhc
Q 018956 246 KTSPVTYQVLGHLKTCLVLAFGYVLL 271 (348)
Q Consensus 246 ~~~a~~~~~~~~~~~v~~~v~s~~~~ 271 (348)
.......+.+.|+-|++.++.+.++-
T Consensus 64 ~~~~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 64 ESSLLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566677777887777665543
No 173
>PF14851 FAM176: FAM176 family
Probab=22.94 E-value=1.6e+02 Score=23.61 Aligned_cols=8 Identities=25% Similarity=0.546 Sum_probs=3.2
Q ss_pred hHHHHHHH
Q 018956 282 GILIAVIG 289 (348)
Q Consensus 282 G~~li~~g 289 (348)
|+++.++.
T Consensus 33 GLlLtLcl 40 (153)
T PF14851_consen 33 GLLLTLCL 40 (153)
T ss_pred HHHHHHHH
Confidence 44443333
No 174
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=22.59 E-value=2.9e+02 Score=19.51 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHh--hcCCchHHHHHHHHHHHHHHHHHHH
Q 018956 9 LGTVGALSLSVISSVSI-VICNKALIS--SLGFTFATTLTSWHLLVTFCSLHVA 59 (348)
Q Consensus 9 ~~~~~~~~~~~~~~~~~-~~~~k~~~~--~~~f~~p~~~~~~r~~~~~~~l~~~ 59 (348)
-++...+..|.+.+.+. .+....+.+ -.|||....+..--..+..+++..+
T Consensus 12 rl~~~lL~iW~vvsfg~~~lfa~~Ln~~~~~GfPlgfw~aaQGsi~~fviLi~~ 65 (81)
T PF13937_consen 12 RLIAILLAIWFVVSFGVGILFADELNQITFGGFPLGFWFAAQGSIIVFVILIFV 65 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeCCCChHHHHHHHhHHHHHHHHHHH
Confidence 34555666788777776 666666532 3688988888866666666665554
No 175
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=22.49 E-value=84 Score=20.34 Aligned_cols=14 Identities=21% Similarity=0.622 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhhh
Q 018956 283 ILIAVIGMVLYSYC 296 (348)
Q Consensus 283 ~~li~~g~~l~~~~ 296 (348)
++++++|+++-+..
T Consensus 8 IIviVlgvIigNia 21 (55)
T PF11446_consen 8 IIVIVLGVIIGNIA 21 (55)
T ss_pred HHHHHHHHHHhHHH
Confidence 45555555554443
No 176
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=22.46 E-value=9e+02 Score=25.24 Aligned_cols=110 Identities=11% Similarity=0.030 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHccccccCCCCcchhHHHHHHHHHHHhhhhhhhcccchhHHHHHHhhHHHHHHHHHHHhhc
Q 018956 42 TTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFR 121 (348)
Q Consensus 42 ~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~i~~~l~l~ 121 (348)
..+...|+.++.+.+..+.+....+ .+....++.|++|+++.....+.... ...-.....|+....+..++-+
T Consensus 93 ~~~~~lk~~lag~~~~~~l~~~~~~---~~~~~~~i~s~~Yafsg~~~~~~~~~----~fld~~i~lPL~llgie~~~~~ 165 (843)
T PF09586_consen 93 LLLIILKIGLAGLFFYLYLRKFKKS---RSDWAALIGSLLYAFSGYVIYYSFNI----MFLDAMILLPLLLLGIERLLKE 165 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC---cccHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 4556688888888777765533221 11255666777887765554433321 1111123457777777877766
Q ss_pred cccchhhHHHHHHHhhhhheeeccccccchhHHHHHHHHHHHHHHHHH
Q 018956 122 KKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQI 169 (348)
Q Consensus 122 e~~s~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v 169 (348)
+|..... +.+++.++. + --.|++.++...+-+-++..
T Consensus 166 ~k~~~~~------~~~~l~~i~----n-fYf~ym~~if~~iY~~~r~~ 202 (843)
T PF09586_consen 166 KKWWLFI------ISLALALIS----N-FYFAYMICIFLVIYFLIRYF 202 (843)
T ss_pred CCcchhH------HHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHH
Confidence 6543221 122222211 1 13466666666555555554
No 177
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=22.29 E-value=2.2e+02 Score=22.60 Aligned_cols=15 Identities=20% Similarity=0.113 Sum_probs=5.8
Q ss_pred chhhhhhhhHHHHHH
Q 018956 250 VTYQVLGHLKTCLVL 264 (348)
Q Consensus 250 ~~~~~~~~~~~v~~~ 264 (348)
+..+.++..-.+.+.
T Consensus 44 tKa~TlG~~liLlg~ 58 (145)
T PRK12586 44 TKSSTLSVLLTLIGV 58 (145)
T ss_pred ccchhhHHHHHHHHH
Confidence 333444443333333
No 178
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=22.27 E-value=7.1e+02 Score=24.36 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=20.6
Q ss_pred ccchhHHHHHHHHHHHHHH----HHHHHHHHhhhcCCCHHHHHH
Q 018956 148 QLNVLGSVLSLLAVLTTCV----AQIMTNTIQKKFKVSSTQLLY 187 (348)
Q Consensus 148 ~~~~~G~~~~l~s~~~~a~----~~v~~~~~~~~~~~~~~~~~~ 187 (348)
++..+|.++...-++..|= .....||..+ +.++.-+..
T Consensus 77 ~F~PLG~Vlv~mlgvgvAE~sGll~a~~r~~~~--~~p~~~vt~ 118 (502)
T PF03806_consen 77 GFPPLGLVLVMMLGVGVAEKSGLLSALMRKLVL--KAPPRLVTP 118 (502)
T ss_pred cCCcHHHHHHHHHHHHHHHHhchHHHHHHHHhc--cCCcchhhH
Confidence 4556777776666665543 4445555554 334444433
No 179
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=22.21 E-value=81 Score=24.58 Aligned_cols=30 Identities=27% Similarity=0.242 Sum_probs=25.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 018956 147 LQLNVLGSVLSLLAVLTTCVAQIMTNTIQK 176 (348)
Q Consensus 147 ~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~ 176 (348)
.+.+.+|.++.=+-.+.|++|.++++.+-+
T Consensus 101 lsn~~LgwIL~gVf~lIWslY~~~~~~l~e 130 (138)
T PF07123_consen 101 LSNNLLGWILLGVFGLIWSLYFVYTSTLDE 130 (138)
T ss_pred ccCchhHHHHHHHHHHHHHHHHhhccccCC
Confidence 355678988888888999999999998754
No 180
>PRK02935 hypothetical protein; Provisional
Probab=21.92 E-value=3.4e+02 Score=20.18 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=15.8
Q ss_pred hhhhhhHHHHHHHHHHHhhhcc
Q 018956 277 WRNILGILIAVIGMVLYSYCCS 298 (348)
Q Consensus 277 ~~~~~G~~li~~g~~l~~~~~~ 298 (348)
..-++|.+.++.+.++|-+.-.
T Consensus 42 ifm~~G~l~~l~S~vvYFwiGm 63 (110)
T PRK02935 42 IFMLLGFLAVIASTVVYFWIGM 63 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3445788888888888877644
No 181
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=21.87 E-value=1.4e+02 Score=23.76 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=18.0
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHH
Q 018956 1 MSEGQKFQLGTVGALSLSVISSVSIVIC 28 (348)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (348)
|+.++|.++-.+++.+..++..+.+.+.
T Consensus 1 Mn~r~r~Rl~~il~~~a~l~~a~~l~Ly 28 (153)
T COG2332 1 MNRRRRKRLWIILAGLAGLALAVGLVLY 28 (153)
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 6667677777777666666666555443
No 182
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=21.64 E-value=6.9e+02 Score=23.96 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=27.1
Q ss_pred hhhhhhHHHHHHHHHHHhcCC-CCchhhhhhHHHHHHHHHHHhhhcccc
Q 018956 253 QVLGHLKTCLVLAFGYVLLHD-PFSWRNILGILIAVIGMVLYSYCCSLE 300 (348)
Q Consensus 253 ~~~~~~~~v~~~v~s~~~~~e-~~t~~~~~G~~li~~g~~l~~~~~~~~ 300 (348)
.+=+.+.|+++.+ +++.++- .-...-.-|++.+++|+..+...|.++
T Consensus 163 NiGGal~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 163 NIGGALAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred hcccchHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3444455555544 5555543 223344568888888888887665544
No 183
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=21.34 E-value=1.7e+02 Score=16.63 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=16.7
Q ss_pred HHHhhHHHHHHHHHHHhhccccchh
Q 018956 103 MTKLAIIPCTILLETLFFRKKFSRN 127 (348)
Q Consensus 103 ~l~~~~pi~~~i~~~l~l~e~~s~~ 127 (348)
++....-+..+++..++.++|++..
T Consensus 7 iLDgiL~iYgiiiT~L~~R~K~~~~ 31 (33)
T PF11628_consen 7 ILDGILFIYGIIITALYCREKFSKS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTT-
T ss_pred eHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4444455666778888888888764
No 184
>PRK14397 membrane protein; Provisional
Probab=21.31 E-value=5.3e+02 Score=22.15 Aligned_cols=20 Identities=10% Similarity=0.258 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 018956 152 LGSVLSLLAVLTTCVAQIMT 171 (348)
Q Consensus 152 ~G~~~~l~s~~~~a~~~v~~ 171 (348)
.|--.+++..++..+-.++.
T Consensus 48 ~G~~~gilv~~~D~lKG~la 67 (222)
T PRK14397 48 CGTKWGVLTLVCDVLKGAVP 67 (222)
T ss_pred hchHHHHHHHHHHHHHHHHH
Confidence 45555555556555544443
No 185
>PRK14789 lipoprotein signal peptidase; Provisional
Probab=20.94 E-value=5e+02 Score=21.70 Aligned_cols=15 Identities=7% Similarity=-0.277 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhcCCC
Q 018956 260 TCLVLAFGYVLLHDP 274 (348)
Q Consensus 260 ~v~~~v~s~~~~~e~ 274 (348)
-.++=+++-+.+|..
T Consensus 102 GAlGNliDRl~~G~V 116 (191)
T PRK14789 102 GGLSNLVDRIRQGYV 116 (191)
T ss_pred HHHhhHHHHHhcCce
Confidence 333334555555553
No 186
>PF15431 TMEM190: Transmembrane protein 190
Probab=20.92 E-value=1.8e+02 Score=21.68 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=18.8
Q ss_pred hhhhhHHHHHHHHHHHhhhccccc
Q 018956 278 RNILGILIAVIGMVLYSYCCSLES 301 (348)
Q Consensus 278 ~~~~G~~li~~g~~l~~~~~~~~~ 301 (348)
+...|..+.+.++.++.+++++..
T Consensus 66 wtC~gll~Li~~iclFWWAkRrd~ 89 (134)
T PF15431_consen 66 WTCGGLLLLICSICLFWWAKRRDM 89 (134)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhch
Confidence 456788888888999999887654
No 187
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=20.86 E-value=1.6e+02 Score=28.48 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=20.8
Q ss_pred hhhhhhHHHHHHHHHHHhhhccccccc
Q 018956 277 WRNILGILIAVIGMVLYSYCCSLESQQ 303 (348)
Q Consensus 277 ~~~~~G~~li~~g~~l~~~~~~~~~~~ 303 (348)
|+-.+|++++....++|..-+.++.++
T Consensus 224 WRl~~glg~vpa~~~ly~Rl~M~Et~~ 250 (538)
T KOG0252|consen 224 WRIIFGLGAVPALLVLYFRLKMPETAR 250 (538)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCcchh
Confidence 677889999998888888777665544
Done!