Query 018956
Match_columns 348
No_of_seqs 143 out of 1546
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 08:39:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.8 5.3E-09 1.8E-13 81.1 6.5 65 232-296 39-104 (137)
2 3b5d_A Multidrug transporter E 98.5 8.8E-07 3E-11 66.1 10.0 71 76-146 34-105 (110)
3 2i68_A Protein EMRE; transmemb 98.4 5.6E-07 1.9E-11 69.7 6.7 70 76-145 34-104 (137)
4 3b5d_A Multidrug transporter E 98.3 1.6E-05 5.3E-10 59.3 12.2 64 233-296 40-104 (110)
5 3rko_J NADH-quinone oxidoreduc 72.7 34 0.0012 27.2 10.3 32 265-296 128-159 (184)
6 3l1l_A Arginine/agmatine antip 60.4 22 0.00075 32.3 7.4 24 278-301 409-432 (445)
7 2jo1_A Phospholemman; FXYD1, N 32.4 40 0.0014 21.9 2.9 18 281-298 23-40 (72)
8 2zxe_G FXYD10, phospholemman-l 25.2 42 0.0014 22.1 2.1 21 280-300 25-45 (74)
9 4djk_A Probable glutamate/gamm 20.8 3.1E+02 0.011 24.9 8.2 9 284-292 453-461 (511)
10 2jp3_A FXYD domain-containing 18.6 65 0.0022 20.7 1.9 35 280-314 23-57 (67)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.83 E-value=5.3e-09 Score=81.10 Aligned_cols=65 Identities=6% Similarity=0.142 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhhcccCcchhhhh-hhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018956 232 ISVSVNFSTFLVIGKTSPVTYQVL-GHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 296 (348)
Q Consensus 232 ~~~~~~~~~~~~i~~~~a~~~~~~-~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 296 (348)
+..+..+....++|+.++..+..+ ..+.|++++++++++|+|++|+.+++|++++++|+++.+..
T Consensus 39 ~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 344445667888999999988887 89999999999999999999999999999999999998753
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.50 E-value=8.8e-07 Score=66.14 Aligned_cols=71 Identities=20% Similarity=0.195 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhhhhhhhcccchhHHHHH-HhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeeccc
Q 018956 76 MGFGVLNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD 146 (348)
Q Consensus 76 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~~ 146 (348)
+...+++.++..+...++++.|.+.+..+ ....|+++++++++++||+++..++.++.+++.|+.+....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33345788889999999999999998887 899999999999999999999999999999999999876543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.39 E-value=5.6e-07 Score=69.67 Aligned_cols=70 Identities=20% Similarity=0.196 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhhhhhhcccchhHHHHH-HhhHHHHHHHHHHHhhccccchhhHHHHHHHhhhhheeecc
Q 018956 76 MGFGVLNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT 145 (348)
Q Consensus 76 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~i~~~l~l~e~~s~~~~~~~~l~~~G~~l~~~~ 145 (348)
+...++++++..+.+.+++++|++.+..+ .+..|++++++++++++|+++..+++|++++++|+++....
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 33445888899999999999999998887 89999999999999999999999999999999999997653
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.28 E-value=1.6e-05 Score=59.29 Aligned_cols=64 Identities=6% Similarity=0.149 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhhcccCcchhhhh-hhhHHHHHHHHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018956 233 SVSVNFSTFLVIGKTSPVTYQVL-GHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 296 (348)
Q Consensus 233 ~~~~~~~~~~~i~~~~a~~~~~~-~~~~~v~~~v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 296 (348)
.....+....++|+.+...+..+ ..+.|+.+.+.++++|||++|+.+++|+.+++.|++..+..
T Consensus 40 ~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 33345566778999998888777 89999999999999999999999999999999999998653
No 5
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=72.71 E-value=34 Score=27.20 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=21.9
Q ss_pred HHHHHhcCCCCchhhhhhHHHHHHHHHHHhhh
Q 018956 265 AFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 296 (348)
Q Consensus 265 v~s~~~~~e~~t~~~~~G~~li~~g~~l~~~~ 296 (348)
-+|..+|++-.=+-++.+..+.+.=+......
T Consensus 128 ~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLa 159 (184)
T 3rko_J 128 AVGITLFGPYVLAVELASMLLLAGLVVAFHVG 159 (184)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888877765444333333
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=60.43 E-value=22 Score=32.26 Aligned_cols=24 Identities=4% Similarity=0.088 Sum_probs=17.2
Q ss_pred hhhhhHHHHHHHHHHHhhhccccc
Q 018956 278 RNILGILIAVIGMVLYSYCCSLES 301 (348)
Q Consensus 278 ~~~~G~~li~~g~~l~~~~~~~~~ 301 (348)
..+.|.+++++|..+|...+++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 445688888899988887665443
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=32.38 E-value=40 Score=21.90 Aligned_cols=18 Identities=6% Similarity=0.229 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHhhhcc
Q 018956 281 LGILIAVIGMVLYSYCCS 298 (348)
Q Consensus 281 ~G~~li~~g~~l~~~~~~ 298 (348)
++.++.++|+++....|-
T Consensus 23 fA~vLfi~GI~iilS~Kc 40 (72)
T 2jo1_A 23 IAGILFILGILIVLSRRC 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcc
Confidence 345566666666554443
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=25.20 E-value=42 Score=22.06 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHHhhhcccc
Q 018956 280 ILGILIAVIGMVLYSYCCSLE 300 (348)
Q Consensus 280 ~~G~~li~~g~~l~~~~~~~~ 300 (348)
+++.++.++|+++....|-|-
T Consensus 25 ifA~vLfi~GI~iilS~kcrC 45 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKCRC 45 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC---
T ss_pred hhHHHHHHHHHHHHHcCcccc
Confidence 344566667776665554433
No 9
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=20.79 E-value=3.1e+02 Score=24.91 Aligned_cols=9 Identities=11% Similarity=0.541 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 018956 284 LIAVIGMVL 292 (348)
Q Consensus 284 ~li~~g~~l 292 (348)
.+++.++..
T Consensus 453 ~~~~~~i~~ 461 (511)
T 4djk_A 453 FLVVLALPF 461 (511)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=18.58 E-value=65 Score=20.72 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHhhhcccccccccccccCCCCC
Q 018956 280 ILGILIAVIGMVLYSYCCSLESQQKASETSSQLPQ 314 (348)
Q Consensus 280 ~~G~~li~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 314 (348)
+++.++.++|+++....|-+.+.+++.++-.+..+
T Consensus 23 ifA~vLfi~GI~iilS~kcrCk~~qk~~~~~~~a~ 57 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSGKCKCRRNHTPSSLPEKVT 57 (67)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHTCCTTTSTTTSH
T ss_pred hhHHHHHHHHHHHHHcCcccccCCCCCCCCCccCC
Done!