Query 018957
Match_columns 348
No_of_seqs 245 out of 1942
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 05:29:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018957.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018957hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0055 AtpD F0F1-type ATP syn 100.0 1.6E-73 3.6E-78 555.1 17.7 254 86-347 2-260 (468)
2 KOG1350 F0F1-type ATP synthase 100.0 2.2E-73 4.8E-78 545.3 11.8 264 82-347 47-310 (521)
3 TIGR03305 alt_F1F0_F1_bet alte 100.0 2.8E-71 6E-76 558.5 26.5 251 88-347 1-251 (449)
4 CHL00060 atpB ATP synthase CF1 100.0 5.9E-68 1.3E-72 537.8 28.3 261 85-347 14-281 (494)
5 PRK09280 F0F1 ATP synthase sub 100.0 2.5E-67 5.3E-72 531.2 28.2 254 86-347 2-257 (463)
6 TIGR01039 atpD ATP synthase, F 100.0 6.7E-67 1.5E-71 526.9 27.2 253 87-347 2-256 (461)
7 PRK12597 F0F1 ATP synthase sub 100.0 9E-67 2E-71 527.9 27.5 254 86-347 2-256 (461)
8 PTZ00185 ATPase alpha subunit; 100.0 2.7E-66 5.9E-71 525.2 27.6 258 80-347 33-308 (574)
9 TIGR03324 alt_F1F0_F1_al alter 100.0 1.1E-65 2.4E-70 522.0 26.2 247 85-347 26-273 (497)
10 PRK02118 V-type ATP synthase s 100.0 1.8E-65 3.8E-70 514.0 26.9 248 85-347 3-250 (436)
11 PRK04196 V-type ATP synthase s 100.0 2.1E-64 4.5E-69 511.5 27.8 250 85-347 2-259 (460)
12 CHL00059 atpA ATP synthase CF1 100.0 1.3E-64 2.9E-69 512.4 24.9 246 86-347 6-252 (485)
13 COG1157 FliI Flagellar biosynt 100.0 1.5E-64 3.3E-69 499.2 23.9 248 84-347 22-272 (441)
14 TIGR01041 ATP_syn_B_arch ATP s 100.0 3.1E-64 6.6E-69 509.4 26.5 249 86-347 1-257 (458)
15 PRK13343 F0F1 ATP synthase sub 100.0 2E-64 4.3E-69 514.2 24.9 246 86-347 27-273 (502)
16 PRK09281 F0F1 ATP synthase sub 100.0 2.6E-64 5.7E-69 514.8 25.3 246 86-347 27-273 (502)
17 TIGR00962 atpA proton transloc 100.0 5.1E-64 1.1E-68 512.5 25.4 246 86-347 26-272 (501)
18 TIGR01043 ATP_syn_A_arch ATP s 100.0 1.9E-62 4.1E-67 504.2 24.5 249 88-347 2-338 (578)
19 PRK04192 V-type ATP synthase s 100.0 4.8E-62 1E-66 501.8 25.2 252 86-347 3-343 (586)
20 TIGR01040 V-ATPase_V1_B V-type 100.0 1.1E-61 2.3E-66 488.3 26.0 249 86-347 1-266 (466)
21 TIGR01042 V-ATPase_V1_A V-type 100.0 7.6E-62 1.7E-66 498.3 23.7 252 86-347 1-344 (591)
22 PRK08927 fliI flagellum-specif 100.0 4.9E-61 1.1E-65 483.4 28.4 251 84-347 15-267 (442)
23 PRK08972 fliI flagellum-specif 100.0 3.4E-61 7.4E-66 483.6 26.4 247 85-347 24-271 (444)
24 PRK07165 F0F1 ATP synthase sub 100.0 2.2E-61 4.7E-66 490.7 25.2 243 89-347 4-252 (507)
25 PRK06936 type III secretion sy 100.0 3E-61 6.6E-66 484.5 25.9 248 84-347 21-271 (439)
26 COG0056 AtpA F0F1-type ATP syn 100.0 6.1E-61 1.3E-65 474.9 20.0 249 84-347 25-273 (504)
27 cd01135 V_A-ATPase_B V/A-type 100.0 1.5E-59 3.2E-64 447.6 17.7 182 158-347 1-185 (276)
28 PRK05922 type III secretion sy 100.0 2.1E-58 4.5E-63 463.8 25.9 247 85-347 18-266 (434)
29 TIGR03496 FliI_clade1 flagella 100.0 6.2E-58 1.3E-62 459.0 27.1 244 88-347 1-246 (411)
30 TIGR03497 FliI_clade2 flagella 100.0 6.4E-58 1.4E-62 459.1 25.9 245 88-347 1-246 (413)
31 PRK05688 fliI flagellum-specif 100.0 1E-57 2.2E-62 460.4 26.9 247 85-347 26-277 (451)
32 PRK09099 type III secretion sy 100.0 1.1E-57 2.3E-62 459.9 26.3 248 84-347 22-272 (441)
33 cd01133 F1-ATPase_beta F1 ATP 100.0 2.2E-58 4.8E-63 439.9 18.4 182 158-347 1-182 (274)
34 TIGR03498 FliI_clade3 flagella 100.0 3.1E-57 6.8E-62 454.4 25.7 244 88-347 1-249 (418)
35 PRK06820 type III secretion sy 100.0 8.3E-57 1.8E-61 453.1 26.0 244 86-347 29-272 (440)
36 PRK07960 fliI flagellum-specif 100.0 5E-57 1.1E-61 454.7 23.8 248 84-347 25-284 (455)
37 cd01132 F1_ATPase_alpha F1 ATP 100.0 4.2E-57 9.1E-62 430.7 16.8 179 159-347 2-180 (274)
38 PRK07594 type III secretion sy 100.0 8.8E-56 1.9E-60 444.9 25.0 244 86-347 21-264 (433)
39 TIGR01026 fliI_yscN ATPase Fli 100.0 1.2E-55 2.7E-60 445.7 26.0 248 85-347 22-272 (440)
40 PRK08149 ATP synthase SpaL; Va 100.0 3.2E-55 7E-60 440.3 25.2 246 86-347 6-260 (428)
41 PRK08472 fliI flagellum-specif 100.0 4.1E-55 9E-60 440.2 24.3 247 84-347 16-265 (434)
42 PRK07721 fliI flagellum-specif 100.0 5.1E-55 1.1E-59 441.0 23.7 249 84-347 16-267 (438)
43 TIGR02546 III_secr_ATP type II 100.0 6.3E-53 1.4E-57 424.4 25.3 246 86-347 5-254 (422)
44 PRK06002 fliI flagellum-specif 100.0 1.5E-52 3.3E-57 422.4 24.8 245 85-347 25-273 (450)
45 PRK06793 fliI flagellum-specif 100.0 3.1E-52 6.7E-57 419.2 25.3 247 83-347 18-265 (432)
46 PRK07196 fliI flagellum-specif 100.0 6.3E-52 1.4E-56 417.1 25.3 248 84-347 15-264 (434)
47 PRK06315 type III secretion sy 100.0 7.6E-50 1.6E-54 402.9 23.5 248 85-347 22-274 (442)
48 cd01134 V_A-ATPase_A V/A-type 100.0 9E-50 2E-54 390.6 14.0 153 189-347 121-273 (369)
49 COG1155 NtpA Archaeal/vacuolar 100.0 5E-49 1.1E-53 395.6 14.0 250 87-347 2-340 (588)
50 cd01136 ATPase_flagellum-secre 100.0 4.9E-48 1.1E-52 377.1 17.1 178 158-347 1-178 (326)
51 PRK14698 V-type ATP synthase s 100.0 4.3E-46 9.3E-51 404.9 21.1 151 85-241 2-242 (1017)
52 KOG1352 Vacuolar H+-ATPase V1 100.0 5.3E-47 1.1E-51 370.8 6.4 260 78-347 12-363 (618)
53 COG1156 NtpB Archaeal/vacuolar 100.0 4.9E-44 1.1E-48 351.3 14.0 251 86-347 6-262 (463)
54 PF00006 ATP-synt_ab: ATP synt 100.0 7.6E-41 1.7E-45 309.9 11.6 124 212-347 1-124 (215)
55 PRK12608 transcription termina 100.0 3.6E-40 7.8E-45 325.9 16.6 181 144-347 57-239 (380)
56 KOG1351 Vacuolar H+-ATPase V1 100.0 5.1E-40 1.1E-44 313.1 13.1 251 84-347 21-288 (489)
57 PRK12678 transcription termina 100.0 1.8E-37 4E-42 318.0 18.1 183 144-347 331-522 (672)
58 PRK09376 rho transcription ter 100.0 6.1E-35 1.3E-39 290.0 18.3 183 144-347 89-275 (416)
59 KOG1353 F0F1-type ATP synthase 100.0 4.1E-32 8.9E-37 254.0 2.1 232 85-341 19-257 (340)
60 TIGR00767 rho transcription te 99.9 1.8E-27 3.8E-32 237.5 14.9 182 144-347 89-274 (415)
61 cd01128 rho_factor Transcripti 99.9 4.2E-27 9E-32 222.6 13.2 119 213-347 3-122 (249)
62 COG1158 Rho Transcription term 99.9 4.4E-26 9.5E-31 220.7 14.6 183 144-347 92-279 (422)
63 PF11421 Synthase_beta: ATP sy 98.9 4.7E-10 1E-14 79.8 2.7 47 1-47 1-49 (49)
64 PF02874 ATP-synt_ab_N: ATP sy 98.7 6.2E-08 1.4E-12 73.8 6.7 66 90-156 1-69 (69)
65 cd01120 RecA-like_NTPases RecA 98.4 7.2E-06 1.6E-10 69.3 12.4 100 229-344 2-101 (165)
66 COG0467 RAD55 RecA-superfamily 98.2 8.9E-06 1.9E-10 76.8 10.6 129 208-343 3-139 (260)
67 cd01394 radB RadB. The archaea 98.2 1.1E-05 2.4E-10 73.7 10.2 52 210-262 1-54 (218)
68 PF06745 KaiC: KaiC; InterPro 98.1 7.3E-06 1.6E-10 75.5 6.7 124 210-340 1-127 (226)
69 cd01123 Rad51_DMC1_radA Rad51_ 98.0 7E-05 1.5E-09 68.9 11.0 121 210-341 1-128 (235)
70 smart00382 AAA ATPases associa 98.0 1.1E-05 2.4E-10 65.0 4.8 93 225-343 1-93 (148)
71 TIGR03878 thermo_KaiC_2 KaiC d 97.9 8.5E-05 1.8E-09 70.7 11.3 58 210-268 4-77 (259)
72 TIGR02236 recomb_radA DNA repa 97.9 4.4E-05 9.5E-10 74.0 9.0 124 207-343 74-207 (310)
73 cd01393 recA_like RecA is a b 97.9 6.5E-05 1.4E-09 68.7 9.1 54 210-263 1-61 (226)
74 PRK06067 flagellar accessory p 97.9 7.4E-05 1.6E-09 69.3 9.6 71 207-281 4-76 (234)
75 TIGR02012 tigrfam_recA protein 97.8 7.6E-05 1.6E-09 73.7 8.7 110 208-341 34-146 (321)
76 PRK09354 recA recombinase A; P 97.8 8.4E-05 1.8E-09 74.1 8.9 111 207-341 38-151 (349)
77 TIGR03881 KaiC_arch_4 KaiC dom 97.7 0.00022 4.7E-09 65.7 10.0 68 210-281 2-71 (229)
78 cd00983 recA RecA is a bacter 97.7 8.2E-05 1.8E-09 73.6 7.2 111 207-341 33-146 (325)
79 PLN03187 meiotic recombination 97.7 0.00031 6.7E-09 70.0 11.1 124 206-343 104-236 (344)
80 cd01122 GP4d_helicase GP4d_hel 97.7 0.0008 1.7E-08 63.4 13.4 67 207-273 10-77 (271)
81 PRK09302 circadian clock prote 97.7 0.00028 6.1E-09 73.1 11.0 72 206-281 251-324 (509)
82 PRK09361 radB DNA repair and r 97.7 0.0003 6.5E-09 64.7 10.0 57 207-264 2-60 (225)
83 TIGR02655 circ_KaiC circadian 97.6 0.00036 7.8E-09 72.2 10.2 72 206-281 241-314 (484)
84 TIGR02238 recomb_DMC1 meiotic 97.5 0.00055 1.2E-08 67.3 10.2 126 203-342 71-205 (313)
85 TIGR03877 thermo_KaiC_1 KaiC d 97.5 0.00016 3.5E-09 67.5 6.2 69 209-281 2-72 (237)
86 PRK04328 hypothetical protein; 97.5 0.0002 4.4E-09 67.7 6.4 70 208-281 3-74 (249)
87 PTZ00035 Rad51 protein; Provis 97.5 0.00071 1.5E-08 67.1 10.5 127 202-342 92-227 (337)
88 PRK04301 radA DNA repair and r 97.4 0.00093 2E-08 65.2 10.4 124 207-343 81-213 (317)
89 TIGR02237 recomb_radB DNA repa 97.4 0.002 4.3E-08 58.4 11.1 42 223-265 9-50 (209)
90 TIGR03880 KaiC_arch_3 KaiC dom 97.3 0.0021 4.6E-08 59.1 11.0 65 213-281 1-67 (224)
91 TIGR02655 circ_KaiC circadian 97.3 0.00035 7.5E-09 72.3 6.2 70 209-281 2-73 (484)
92 PLN03186 DNA repair protein RA 97.3 0.0011 2.4E-08 66.1 9.0 123 207-343 102-233 (342)
93 PRK05973 replicative DNA helic 97.3 0.0031 6.8E-08 59.8 11.5 99 223-341 61-160 (237)
94 PRK09519 recA DNA recombinatio 97.3 0.00071 1.5E-08 73.8 8.0 111 207-341 38-151 (790)
95 TIGR00416 sms DNA repair prote 97.2 0.00097 2.1E-08 68.7 8.3 71 207-281 73-145 (454)
96 cd01121 Sms Sms (bacterial rad 97.2 0.002 4.3E-08 64.9 10.0 71 207-281 61-133 (372)
97 PRK09302 circadian clock prote 97.2 0.00056 1.2E-08 70.9 5.7 71 208-281 11-83 (509)
98 PF05729 NACHT: NACHT domain 97.1 0.0017 3.6E-08 55.3 7.3 42 228-269 2-48 (166)
99 cd01124 KaiC KaiC is a circadi 97.1 0.008 1.7E-07 52.9 11.3 43 229-272 2-44 (187)
100 PF00154 RecA: recA bacterial 97.0 0.0019 4E-08 64.0 7.7 110 207-340 31-143 (322)
101 PRK11823 DNA repair protein Ra 97.0 0.0028 6E-08 65.2 8.7 109 208-342 60-170 (446)
102 TIGR02239 recomb_RAD51 DNA rep 97.0 0.0042 9.2E-08 61.1 9.5 122 207-342 75-205 (316)
103 PF13173 AAA_14: AAA domain 96.9 0.0027 5.9E-08 53.6 6.7 25 226-250 2-26 (128)
104 PF00931 NB-ARC: NB-ARC domain 96.8 0.0066 1.4E-07 57.1 9.4 97 224-341 17-114 (287)
105 PRK08533 flagellar accessory p 96.8 0.004 8.7E-08 58.3 7.5 68 210-281 6-75 (230)
106 PF13481 AAA_25: AAA domain; P 96.7 0.012 2.7E-07 52.1 9.8 29 224-252 30-58 (193)
107 PF08423 Rad51: Rad51; InterP 96.7 0.0076 1.7E-07 57.5 8.9 127 205-343 15-148 (256)
108 cd00009 AAA The AAA+ (ATPases 96.5 0.02 4.3E-07 46.5 8.6 41 225-266 18-58 (151)
109 PF13401 AAA_22: AAA domain; P 96.4 0.016 3.4E-07 47.9 7.8 93 225-340 3-99 (131)
110 PF04665 Pox_A32: Poxvirus A32 96.3 0.022 4.9E-07 54.2 8.9 41 228-270 15-55 (241)
111 PRK00411 cdc6 cell division co 96.2 0.022 4.8E-07 56.5 9.1 98 224-341 53-151 (394)
112 PF01637 Arch_ATPase: Archaeal 96.1 0.0038 8.3E-08 55.9 2.9 38 225-263 19-56 (234)
113 PF03796 DnaB_C: DnaB-like hel 96.1 0.0062 1.3E-07 57.4 4.4 61 210-270 2-63 (259)
114 cd00544 CobU Adenosylcobinamid 96.1 0.017 3.6E-07 51.9 6.9 87 229-344 2-89 (169)
115 TIGR02928 orc1/cdc6 family rep 96.0 0.026 5.6E-07 55.3 8.4 100 224-341 38-142 (365)
116 COG0468 RecA RecA/RadA recombi 96.0 0.027 5.9E-07 54.7 8.3 115 204-343 36-156 (279)
117 TIGR00665 DnaB replicative DNA 96.0 0.01 2.2E-07 60.3 5.4 63 208-270 176-239 (434)
118 PRK09183 transposase/IS protei 95.8 0.015 3.3E-07 55.5 5.6 27 223-249 99-125 (259)
119 PRK08181 transposase; Validate 95.8 0.016 3.4E-07 55.9 5.8 28 224-251 104-131 (269)
120 COG1124 DppF ABC-type dipeptid 95.8 0.0082 1.8E-07 57.3 3.7 28 220-247 27-54 (252)
121 cd00984 DnaB_C DnaB helicase C 95.8 0.018 3.9E-07 53.1 6.0 50 223-272 10-59 (242)
122 cd01125 repA Hexameric Replica 95.8 0.088 1.9E-06 49.0 10.5 26 226-251 1-26 (239)
123 cd03115 SRP The signal recogni 95.8 0.15 3.3E-06 44.7 11.5 43 229-272 3-45 (173)
124 PRK12377 putative replication 95.7 0.032 6.9E-07 53.3 7.4 25 227-251 102-126 (248)
125 PRK13342 recombination factor 95.7 0.035 7.6E-07 56.2 7.9 67 227-303 37-103 (413)
126 cd00820 PEPCK_HprK Phosphoenol 95.7 0.012 2.5E-07 49.5 3.6 28 220-247 9-36 (107)
127 PRK14722 flhF flagellar biosyn 95.7 0.047 1E-06 55.2 8.6 45 207-251 117-162 (374)
128 cd03282 ABC_MSH4_euk MutS4 hom 95.6 0.12 2.7E-06 47.6 10.6 116 216-342 19-155 (204)
129 cd03222 ABC_RNaseL_inhibitor T 95.6 0.013 2.9E-07 52.9 4.1 33 215-247 14-46 (177)
130 PF13191 AAA_16: AAA ATPase do 95.6 0.061 1.3E-06 46.8 8.2 45 221-266 19-63 (185)
131 COG2256 MGS1 ATPase related to 95.6 0.04 8.7E-07 56.1 7.6 31 315-346 92-122 (436)
132 PRK10416 signal recognition pa 95.5 0.16 3.4E-06 50.2 11.5 29 224-252 112-140 (318)
133 TIGR01166 cbiO cobalt transpor 95.5 0.014 3.1E-07 52.1 3.8 28 220-247 12-39 (190)
134 cd03229 ABC_Class3 This class 95.5 0.014 3.1E-07 51.9 3.7 28 220-247 20-47 (178)
135 cd03254 ABCC_Glucan_exporter_l 95.5 0.014 3.1E-07 53.5 3.8 30 219-248 22-51 (229)
136 PF00004 AAA: ATPase family as 95.5 0.12 2.7E-06 42.2 9.0 22 229-250 1-22 (132)
137 PF13207 AAA_17: AAA domain; P 95.5 0.014 3.1E-07 47.8 3.4 22 228-249 1-22 (121)
138 cd03260 ABC_PstB_phosphate_tra 95.4 0.016 3.4E-07 53.3 3.9 30 219-248 19-48 (227)
139 cd03269 ABC_putative_ATPase Th 95.4 0.016 3.5E-07 52.6 3.9 29 219-247 19-47 (210)
140 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.4 0.016 3.5E-07 52.8 3.9 28 220-247 24-51 (218)
141 PF00448 SRP54: SRP54-type pro 95.4 0.23 5E-06 45.5 11.5 109 228-341 3-128 (196)
142 cd03292 ABC_FtsE_transporter F 95.4 0.017 3.6E-07 52.4 3.9 30 218-247 19-48 (214)
143 cd03225 ABC_cobalt_CbiO_domain 95.4 0.016 3.6E-07 52.5 3.8 29 219-247 20-48 (211)
144 PF05496 RuvB_N: Holliday junc 95.4 0.084 1.8E-06 50.1 8.6 43 229-276 53-98 (233)
145 TIGR02211 LolD_lipo_ex lipopro 95.4 0.017 3.7E-07 52.7 3.9 29 219-247 24-52 (221)
146 COG1116 TauB ABC-type nitrate/ 95.3 0.016 3.5E-07 55.4 3.8 33 214-246 16-49 (248)
147 cd03287 ABC_MSH3_euk MutS3 hom 95.3 0.3 6.6E-06 45.7 12.3 102 214-324 19-141 (222)
148 cd03224 ABC_TM1139_LivF_branch 95.3 0.017 3.6E-07 52.7 3.7 28 220-247 20-47 (222)
149 PF00005 ABC_tran: ABC transpo 95.3 0.016 3.4E-07 48.6 3.3 28 220-247 5-32 (137)
150 TIGR02315 ABC_phnC phosphonate 95.3 0.017 3.7E-07 53.5 3.8 29 219-247 21-49 (243)
151 PRK05748 replicative DNA helic 95.3 0.021 4.7E-07 58.4 4.8 63 208-270 184-247 (448)
152 PRK05800 cobU adenosylcobinami 95.3 0.088 1.9E-06 47.2 8.2 38 228-269 3-40 (170)
153 TIGR00960 3a0501s02 Type II (G 95.3 0.019 4E-07 52.4 3.8 29 219-247 22-50 (216)
154 cd03265 ABC_DrrA DrrA is the A 95.3 0.019 4.1E-07 52.6 3.8 30 218-247 18-47 (220)
155 PRK08116 hypothetical protein; 95.3 0.072 1.6E-06 51.2 8.0 23 229-251 117-139 (268)
156 TIGR03608 L_ocin_972_ABC putat 95.2 0.019 4.1E-07 51.8 3.8 30 218-247 16-45 (206)
157 PRK13540 cytochrome c biogenes 95.2 0.02 4.3E-07 51.8 3.9 30 218-247 19-48 (200)
158 cd03238 ABC_UvrA The excision 95.2 0.019 4.1E-07 51.8 3.7 27 220-246 15-41 (176)
159 cd03256 ABC_PhnC_transporter A 95.2 0.019 4.1E-07 53.0 3.8 28 220-247 21-48 (241)
160 TIGR03410 urea_trans_UrtE urea 95.2 0.019 4E-07 52.9 3.7 30 218-247 18-47 (230)
161 cd03298 ABC_ThiQ_thiamine_tran 95.2 0.023 5E-07 51.6 4.2 31 217-247 15-45 (211)
162 cd03296 ABC_CysA_sulfate_impor 95.2 0.02 4.4E-07 53.1 3.9 30 219-248 21-50 (239)
163 TIGR03015 pepcterm_ATPase puta 95.2 0.19 4.2E-06 46.9 10.4 23 227-249 44-66 (269)
164 PF13521 AAA_28: AAA domain; P 95.2 0.027 5.9E-07 49.1 4.4 35 228-271 1-35 (163)
165 PRK06526 transposase; Provisio 95.1 0.027 5.8E-07 53.8 4.7 28 224-251 96-123 (254)
166 COG4619 ABC-type uncharacteriz 95.1 0.02 4.2E-07 52.6 3.5 29 220-248 23-51 (223)
167 cd03261 ABC_Org_Solvent_Resist 95.1 0.021 4.6E-07 52.7 3.9 30 218-247 18-47 (235)
168 cd03258 ABC_MetN_methionine_tr 95.1 0.021 4.6E-07 52.6 3.8 29 220-248 25-53 (233)
169 PRK11124 artP arginine transpo 95.1 0.021 4.6E-07 53.0 3.8 28 220-247 22-49 (242)
170 cd03262 ABC_HisP_GlnQ_permease 95.1 0.022 4.7E-07 51.7 3.8 28 220-247 20-47 (213)
171 TIGR03600 phage_DnaB phage rep 95.1 0.029 6.3E-07 56.8 5.1 62 208-269 175-237 (421)
172 cd03259 ABC_Carb_Solutes_like 95.1 0.022 4.7E-07 51.8 3.8 28 220-247 20-47 (213)
173 cd03226 ABC_cobalt_CbiO_domain 95.1 0.022 4.8E-07 51.5 3.8 27 221-247 21-47 (205)
174 PRK13539 cytochrome c biogenes 95.1 0.022 4.9E-07 51.8 3.9 31 218-248 20-50 (207)
175 cd03257 ABC_NikE_OppD_transpor 95.1 0.021 4.6E-07 52.2 3.7 29 219-247 24-52 (228)
176 cd03252 ABCC_Hemolysin The ABC 95.1 0.022 4.7E-07 52.7 3.8 30 218-247 20-49 (237)
177 cd03218 ABC_YhbG The ABC trans 95.1 0.022 4.7E-07 52.4 3.7 28 220-247 20-47 (232)
178 PRK14247 phosphate ABC transpo 95.1 0.021 4.6E-07 53.2 3.8 31 218-248 21-51 (250)
179 cd03245 ABCC_bacteriocin_expor 95.1 0.023 5E-07 51.8 3.8 29 219-247 23-51 (220)
180 cd03266 ABC_NatA_sodium_export 95.1 0.023 5E-07 51.8 3.8 28 220-247 25-52 (218)
181 cd03219 ABC_Mj1267_LivG_branch 95.1 0.021 4.5E-07 52.7 3.5 28 220-247 20-47 (236)
182 PRK08118 topology modulation p 95.1 0.021 4.6E-07 50.8 3.4 23 227-249 2-24 (167)
183 cd03251 ABCC_MsbA MsbA is an e 95.1 0.024 5.1E-07 52.3 3.9 30 218-247 20-49 (234)
184 TIGR03864 PQQ_ABC_ATP ABC tran 95.1 0.024 5.1E-07 52.6 3.9 28 220-247 21-48 (236)
185 cd03247 ABCC_cytochrome_bd The 95.0 0.026 5.6E-07 50.1 3.9 31 218-248 20-50 (178)
186 PRK14267 phosphate ABC transpo 95.0 0.023 5E-07 53.1 3.8 29 219-247 23-51 (253)
187 PRK11701 phnK phosphonate C-P 95.0 0.023 5.1E-07 53.4 3.8 31 218-248 24-54 (258)
188 cd03235 ABC_Metallic_Cations A 95.0 0.022 4.8E-07 51.8 3.5 27 221-247 20-46 (213)
189 cd03231 ABC_CcmA_heme_exporter 95.0 0.025 5.4E-07 51.3 3.8 30 218-247 18-47 (201)
190 cd03301 ABC_MalK_N The N-termi 95.0 0.025 5.5E-07 51.3 3.9 30 219-248 19-48 (213)
191 TIGR02673 FtsE cell division A 95.0 0.024 5.3E-07 51.4 3.8 28 220-247 22-49 (214)
192 cd03216 ABC_Carb_Monos_I This 95.0 0.027 5.8E-07 49.6 3.9 27 221-247 21-47 (163)
193 PRK14274 phosphate ABC transpo 95.0 0.026 5.5E-07 53.1 3.9 28 220-247 32-59 (259)
194 PRK10895 lipopolysaccharide AB 95.0 0.025 5.5E-07 52.4 3.9 30 218-247 21-50 (241)
195 TIGR01978 sufC FeS assembly AT 95.0 0.024 5.1E-07 52.5 3.6 30 218-247 18-47 (243)
196 PRK14240 phosphate transporter 94.9 0.025 5.5E-07 52.7 3.8 30 218-247 21-50 (250)
197 cd03293 ABC_NrtD_SsuB_transpor 94.9 0.025 5.5E-07 51.7 3.7 28 220-247 24-51 (220)
198 PRK11264 putative amino-acid A 94.9 0.026 5.6E-07 52.6 3.8 29 219-247 22-50 (250)
199 cd03250 ABCC_MRP_domain1 Domai 94.9 0.025 5.5E-07 51.1 3.7 31 218-248 23-53 (204)
200 PRK11248 tauB taurine transpor 94.9 0.027 5.7E-07 53.3 3.9 29 219-247 20-48 (255)
201 PRK09493 glnQ glutamine ABC tr 94.9 0.027 5.8E-07 52.3 3.9 31 218-248 19-49 (240)
202 PRK10584 putative ABC transpor 94.9 0.027 5.9E-07 51.7 3.9 29 219-247 29-57 (228)
203 PRK10575 iron-hydroxamate tran 94.9 0.024 5.2E-07 53.6 3.6 29 219-247 30-58 (265)
204 PRK13543 cytochrome c biogenes 94.9 0.027 5.8E-07 51.5 3.8 30 218-247 29-58 (214)
205 PRK07261 topology modulation p 94.9 0.025 5.3E-07 50.5 3.4 23 227-249 1-23 (171)
206 PRK14250 phosphate ABC transpo 94.9 0.028 6E-07 52.4 3.9 30 218-247 21-50 (241)
207 cd03295 ABC_OpuCA_Osmoprotecti 94.9 0.028 6.2E-07 52.2 3.9 29 219-247 20-48 (242)
208 PRK14974 cell division protein 94.9 0.22 4.7E-06 49.7 10.3 28 224-251 138-165 (336)
209 PRK14255 phosphate ABC transpo 94.8 0.028 6E-07 52.6 3.8 29 219-247 24-52 (252)
210 COG0552 FtsY Signal recognitio 94.8 0.14 2.9E-06 51.1 8.7 86 228-333 141-227 (340)
211 PRK13541 cytochrome c biogenes 94.8 0.035 7.6E-07 50.0 4.3 33 216-248 16-48 (195)
212 PRK11629 lolD lipoprotein tran 94.8 0.029 6.3E-07 51.8 3.9 28 220-247 29-56 (233)
213 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.8 0.028 6E-07 52.0 3.7 31 218-248 21-51 (238)
214 cd03223 ABCD_peroxisomal_ALDP 94.8 0.031 6.6E-07 49.4 3.8 31 218-248 19-49 (166)
215 cd03214 ABC_Iron-Siderophores_ 94.8 0.029 6.3E-07 50.0 3.7 30 218-247 17-46 (180)
216 cd03263 ABC_subfamily_A The AB 94.8 0.03 6.4E-07 51.1 3.8 29 219-247 21-49 (220)
217 PRK11144 modC molybdate transp 94.8 0.034 7.4E-07 55.3 4.5 32 216-247 14-45 (352)
218 cd03230 ABC_DR_subfamily_A Thi 94.8 0.032 6.9E-07 49.4 3.9 29 219-247 19-47 (173)
219 cd03215 ABC_Carb_Monos_II This 94.8 0.03 6.5E-07 49.9 3.7 30 219-248 19-48 (182)
220 cd03268 ABC_BcrA_bacitracin_re 94.8 0.031 6.8E-07 50.6 3.9 30 219-248 19-48 (208)
221 TIGR02770 nickel_nikD nickel i 94.8 0.029 6.3E-07 51.8 3.7 30 219-248 5-34 (230)
222 TIGR02881 spore_V_K stage V sp 94.8 0.1 2.2E-06 49.4 7.5 28 222-249 38-65 (261)
223 cd03246 ABCC_Protease_Secretio 94.8 0.034 7.4E-07 49.2 4.0 29 220-248 22-50 (173)
224 TIGR03411 urea_trans_UrtD urea 94.8 0.031 6.6E-07 51.9 3.8 28 220-247 22-49 (242)
225 TIGR00064 ftsY signal recognit 94.7 0.34 7.3E-06 46.8 11.1 30 223-252 69-98 (272)
226 TIGR01188 drrA daunorubicin re 94.7 0.03 6.5E-07 54.2 3.9 29 219-247 12-40 (302)
227 PRK14241 phosphate transporter 94.7 0.031 6.7E-07 52.5 3.8 30 218-247 22-51 (258)
228 PRK11247 ssuB aliphatic sulfon 94.7 0.031 6.8E-07 53.1 3.9 30 218-247 30-59 (257)
229 COG3842 PotA ABC-type spermidi 94.7 0.028 6.1E-07 56.3 3.7 35 213-247 17-52 (352)
230 TIGR02323 CP_lyasePhnK phospho 94.7 0.03 6.5E-07 52.4 3.7 30 218-247 21-50 (253)
231 PRK10247 putative ABC transpor 94.7 0.032 7E-07 51.4 3.9 29 219-247 26-54 (225)
232 PRK14242 phosphate transporter 94.7 0.031 6.7E-07 52.2 3.8 28 220-247 26-53 (253)
233 TIGR03005 ectoine_ehuA ectoine 94.7 0.031 6.8E-07 52.3 3.8 30 218-247 18-47 (252)
234 PRK15093 antimicrobial peptide 94.7 0.031 6.6E-07 55.1 3.9 34 215-248 21-55 (330)
235 PRK14273 phosphate ABC transpo 94.7 0.031 6.7E-07 52.4 3.8 28 220-247 27-54 (254)
236 PRK10771 thiQ thiamine transpo 94.7 0.032 6.9E-07 51.6 3.8 30 218-247 17-46 (232)
237 PRK15056 manganese/iron transp 94.7 0.033 7.1E-07 53.0 3.9 30 218-247 25-54 (272)
238 cd03290 ABCC_SUR1_N The SUR do 94.7 0.032 7E-07 51.0 3.7 27 221-247 22-48 (218)
239 TIGR01184 ntrCD nitrate transp 94.7 0.034 7.3E-07 51.6 3.8 28 220-247 5-32 (230)
240 PRK13646 cbiO cobalt transport 94.7 0.03 6.5E-07 53.8 3.6 30 219-248 26-55 (286)
241 TIGR02324 CP_lyasePhnL phospho 94.6 0.034 7.4E-07 50.9 3.8 30 218-247 26-55 (224)
242 PRK13548 hmuV hemin importer A 94.6 0.033 7.1E-07 52.6 3.8 28 220-247 22-49 (258)
243 PRK11831 putative ABC transpor 94.6 0.033 7.2E-07 52.9 3.9 30 218-247 25-54 (269)
244 PRK15177 Vi polysaccharide exp 94.6 0.034 7.4E-07 51.1 3.8 30 219-248 6-35 (213)
245 PRK10908 cell division protein 94.6 0.035 7.6E-07 50.8 3.9 28 220-247 22-49 (222)
246 PF08477 Miro: Miro-like prote 94.6 0.035 7.5E-07 45.0 3.4 22 228-249 1-22 (119)
247 PRK14248 phosphate ABC transpo 94.6 0.034 7.4E-07 52.6 3.9 28 220-247 41-68 (268)
248 PRK14239 phosphate transporter 94.6 0.034 7.4E-07 51.8 3.8 30 218-247 23-52 (252)
249 PRK09165 replicative DNA helic 94.6 0.047 1E-06 57.0 5.2 46 208-253 198-244 (497)
250 PRK14262 phosphate ABC transpo 94.6 0.035 7.6E-07 51.8 3.8 29 219-247 22-50 (250)
251 TIGR00972 3a0107s01c2 phosphat 94.6 0.035 7.6E-07 51.8 3.8 29 219-247 20-48 (247)
252 PRK13538 cytochrome c biogenes 94.6 0.036 7.8E-07 50.3 3.8 30 218-247 19-48 (204)
253 PRK13645 cbiO cobalt transport 94.6 0.034 7.4E-07 53.3 3.8 29 219-247 30-58 (289)
254 cd03248 ABCC_TAP TAP, the Tran 94.6 0.037 8E-07 50.8 3.9 27 221-247 35-61 (226)
255 KOG2028 ATPase related to the 94.6 0.1 2.3E-06 52.9 7.2 25 229-254 165-189 (554)
256 PRK13649 cbiO cobalt transport 94.6 0.035 7.6E-07 52.9 3.8 29 219-247 26-54 (280)
257 PRK11308 dppF dipeptide transp 94.6 0.035 7.6E-07 54.7 3.9 31 218-248 33-63 (327)
258 cd03369 ABCC_NFT1 Domain 2 of 94.6 0.038 8.2E-07 50.1 3.9 31 218-248 26-56 (207)
259 PRK10851 sulfate/thiosulfate t 94.5 0.036 7.7E-07 55.3 3.9 31 218-248 20-50 (353)
260 cd03267 ABC_NatA_like Similar 94.5 0.037 7.9E-07 51.5 3.8 30 219-248 40-69 (236)
261 TIGR01288 nodI ATP-binding ABC 94.5 0.035 7.7E-07 53.7 3.8 29 219-247 23-51 (303)
262 PF13238 AAA_18: AAA domain; P 94.5 0.034 7.4E-07 45.4 3.2 21 229-249 1-21 (129)
263 PRK13648 cbiO cobalt transport 94.5 0.037 8.1E-07 52.5 3.9 30 218-247 27-56 (269)
264 cd03270 ABC_UvrA_I The excisio 94.5 0.036 7.7E-07 51.5 3.7 28 220-247 15-42 (226)
265 TIGR01189 ccmA heme ABC export 94.5 0.04 8.6E-07 49.7 3.9 29 219-247 19-47 (198)
266 PRK10253 iron-enterobactin tra 94.5 0.034 7.3E-07 52.7 3.5 29 219-247 26-54 (265)
267 PRK09544 znuC high-affinity zi 94.5 0.038 8.3E-07 52.2 3.9 29 219-247 23-51 (251)
268 PRK14237 phosphate transporter 94.5 0.039 8.4E-07 52.4 4.0 29 220-248 40-68 (267)
269 cd03233 ABC_PDR_domain1 The pl 94.5 0.035 7.6E-07 50.5 3.5 31 218-248 25-55 (202)
270 PRK14256 phosphate ABC transpo 94.5 0.039 8.4E-07 51.6 3.9 28 221-248 25-52 (252)
271 TIGR03740 galliderm_ABC gallid 94.5 0.04 8.8E-07 50.5 3.9 28 220-247 20-47 (223)
272 cd03253 ABCC_ATM1_transporter 94.5 0.04 8.7E-07 50.8 3.9 31 218-248 19-49 (236)
273 PRK14243 phosphate transporter 94.5 0.039 8.4E-07 52.3 3.8 29 219-247 29-57 (264)
274 PRK14266 phosphate ABC transpo 94.5 0.041 8.8E-07 51.3 3.9 30 218-247 21-50 (250)
275 PRK11300 livG leucine/isoleuci 94.5 0.038 8.2E-07 51.7 3.7 30 218-247 23-52 (255)
276 PRK13632 cbiO cobalt transport 94.5 0.039 8.5E-07 52.4 3.9 27 221-247 30-56 (271)
277 COG0444 DppD ABC-type dipeptid 94.5 0.048 1E-06 53.9 4.5 35 214-248 18-53 (316)
278 TIGR02769 nickel_nikE nickel i 94.5 0.038 8.2E-07 52.3 3.7 30 218-247 29-58 (265)
279 PRK13641 cbiO cobalt transport 94.4 0.039 8.5E-07 53.0 3.9 30 218-247 25-54 (287)
280 PRK14238 phosphate transporter 94.4 0.041 8.8E-07 52.4 3.9 30 219-248 43-72 (271)
281 cd03217 ABC_FeS_Assembly ABC-t 94.4 0.038 8.3E-07 50.1 3.6 31 218-248 18-48 (200)
282 PRK10744 pstB phosphate transp 94.4 0.039 8.5E-07 52.0 3.8 29 219-247 32-60 (260)
283 PRK13638 cbiO cobalt transport 94.4 0.037 8.1E-07 52.5 3.6 29 219-247 20-48 (271)
284 PRK10418 nikD nickel transport 94.4 0.04 8.7E-07 51.7 3.8 30 218-247 21-50 (254)
285 PRK14245 phosphate ABC transpo 94.4 0.041 8.9E-07 51.4 3.8 30 218-247 21-50 (250)
286 TIGR03771 anch_rpt_ABC anchore 94.4 0.035 7.6E-07 51.2 3.3 27 222-248 2-28 (223)
287 PRK14244 phosphate ABC transpo 94.4 0.043 9.3E-07 51.3 3.9 30 218-247 23-52 (251)
288 PRK14268 phosphate ABC transpo 94.4 0.042 9.1E-07 51.7 3.9 30 218-247 30-59 (258)
289 PRK11432 fbpC ferric transport 94.4 0.04 8.7E-07 55.0 3.9 29 219-247 25-53 (351)
290 cd03213 ABCG_EPDR ABCG transpo 94.4 0.041 8.9E-07 49.7 3.7 30 219-248 28-57 (194)
291 PF01695 IstB_IS21: IstB-like 94.4 0.096 2.1E-06 47.2 6.0 49 223-279 44-92 (178)
292 cd03228 ABCC_MRP_Like The MRP 94.4 0.044 9.5E-07 48.4 3.7 28 220-247 22-49 (171)
293 PRK14271 phosphate ABC transpo 94.4 0.043 9.2E-07 52.5 3.9 31 218-248 39-69 (276)
294 PRK14272 phosphate ABC transpo 94.4 0.043 9.3E-07 51.2 3.8 28 220-247 24-51 (252)
295 PRK10419 nikE nickel transport 94.4 0.041 8.9E-07 52.3 3.8 30 218-247 30-59 (268)
296 cd03264 ABC_drug_resistance_li 94.4 0.04 8.7E-07 50.0 3.5 28 219-247 19-46 (211)
297 cd03236 ABC_RNaseL_inhibitor_d 94.3 0.035 7.6E-07 52.8 3.2 28 220-247 20-47 (255)
298 TIGR02868 CydC thiol reductant 94.3 0.035 7.6E-07 57.5 3.5 31 218-248 353-383 (529)
299 PRK11650 ugpC glycerol-3-phosp 94.3 0.041 9E-07 54.9 3.9 30 218-247 22-51 (356)
300 TIGR01277 thiQ thiamine ABC tr 94.3 0.045 9.7E-07 49.9 3.8 31 218-248 16-46 (213)
301 PRK08760 replicative DNA helic 94.3 0.054 1.2E-06 56.3 4.8 46 208-253 210-256 (476)
302 cd03234 ABCG_White The White s 94.3 0.044 9.5E-07 50.4 3.7 30 219-248 26-55 (226)
303 PRK15079 oligopeptide ABC tran 94.3 0.043 9.3E-07 54.2 3.9 31 218-248 39-69 (331)
304 PRK14261 phosphate ABC transpo 94.3 0.045 9.7E-07 51.2 3.9 28 220-247 26-53 (253)
305 TIGR00968 3a0106s01 sulfate AB 94.3 0.047 1E-06 50.8 3.9 27 221-247 21-47 (237)
306 PRK11614 livF leucine/isoleuci 94.3 0.042 9.1E-07 50.9 3.6 28 220-247 25-52 (237)
307 TIGR03265 PhnT2 putative 2-ami 94.3 0.045 9.7E-07 54.6 3.9 30 218-247 22-51 (353)
308 PRK09984 phosphonate/organopho 94.2 0.045 9.8E-07 51.5 3.8 29 219-247 23-51 (262)
309 PRK14253 phosphate ABC transpo 94.2 0.047 1E-06 50.9 3.9 28 220-247 23-50 (249)
310 PRK14269 phosphate ABC transpo 94.2 0.048 1E-06 50.9 3.9 30 218-247 20-49 (246)
311 PRK12724 flagellar biosynthesi 94.2 0.2 4.3E-06 51.6 8.6 27 224-250 221-247 (432)
312 PF12775 AAA_7: P-loop contain 94.2 0.13 2.8E-06 49.6 6.9 96 224-324 31-131 (272)
313 COG4608 AppF ABC-type oligopep 94.2 0.05 1.1E-06 52.6 4.1 48 214-262 26-74 (268)
314 cd00267 ABC_ATPase ABC (ATP-bi 94.2 0.053 1.1E-06 47.0 3.9 32 217-248 16-47 (157)
315 PRK14259 phosphate ABC transpo 94.2 0.046 1E-06 52.0 3.8 30 219-248 32-61 (269)
316 PRK13546 teichoic acids export 94.2 0.046 1E-06 52.2 3.8 30 218-247 42-71 (264)
317 PRK12727 flagellar biosynthesi 94.2 0.23 5E-06 52.6 9.2 32 221-252 345-376 (559)
318 COG1126 GlnQ ABC-type polar am 94.2 0.043 9.3E-07 51.9 3.5 24 221-244 23-46 (240)
319 PRK09473 oppD oligopeptide tra 94.2 0.043 9.4E-07 54.1 3.7 34 215-248 30-64 (330)
320 PHA02542 41 41 helicase; Provi 94.2 0.052 1.1E-06 56.4 4.4 63 207-270 169-233 (473)
321 PRK14275 phosphate ABC transpo 94.2 0.048 1E-06 52.5 3.9 30 218-247 57-86 (286)
322 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.2 0.049 1.1E-06 50.3 3.8 30 219-248 41-70 (224)
323 PRK14251 phosphate ABC transpo 94.2 0.05 1.1E-06 50.8 3.9 29 219-247 23-51 (251)
324 PRK13643 cbiO cobalt transport 94.2 0.047 1E-06 52.6 3.8 30 218-247 24-53 (288)
325 cd03294 ABC_Pro_Gly_Bertaine T 94.2 0.049 1.1E-06 51.8 3.9 30 218-247 42-71 (269)
326 PRK13547 hmuV hemin importer A 94.2 0.047 1E-06 52.3 3.8 30 218-247 19-48 (272)
327 PRK14270 phosphate ABC transpo 94.2 0.05 1.1E-06 50.9 3.9 28 220-247 24-51 (251)
328 PRK11022 dppD dipeptide transp 94.2 0.047 1E-06 53.8 3.8 30 219-248 26-55 (326)
329 PRK05595 replicative DNA helic 94.2 0.064 1.4E-06 55.0 5.0 62 208-269 182-244 (444)
330 PRK14235 phosphate transporter 94.2 0.051 1.1E-06 51.5 4.0 31 218-248 37-67 (267)
331 CHL00131 ycf16 sulfate ABC tra 94.2 0.044 9.6E-07 51.1 3.5 29 219-247 26-54 (252)
332 PRK13651 cobalt transporter AT 94.2 0.048 1E-06 53.2 3.8 30 218-247 25-54 (305)
333 COG1134 TagH ABC-type polysacc 94.1 0.049 1.1E-06 52.1 3.7 29 218-246 45-73 (249)
334 PRK14260 phosphate ABC transpo 94.1 0.05 1.1E-06 51.2 3.8 30 219-248 26-55 (259)
335 PRK14265 phosphate ABC transpo 94.1 0.05 1.1E-06 51.9 3.9 30 218-247 38-67 (274)
336 COG1127 Ttg2A ABC-type transpo 94.1 0.046 1E-06 52.4 3.5 42 219-260 27-68 (263)
337 PRK11231 fecE iron-dicitrate t 94.1 0.05 1.1E-06 51.0 3.8 27 221-247 23-49 (255)
338 COG4988 CydD ABC-type transpor 94.1 0.066 1.4E-06 56.5 5.0 30 218-247 339-368 (559)
339 PRK14723 flhF flagellar biosyn 94.1 0.26 5.7E-06 54.1 9.7 113 223-339 182-306 (767)
340 PRK13647 cbiO cobalt transport 94.1 0.051 1.1E-06 51.9 3.9 27 221-247 26-52 (274)
341 cd03232 ABC_PDR_domain2 The pl 94.1 0.052 1.1E-06 48.9 3.7 27 221-247 28-54 (192)
342 PRK14087 dnaA chromosomal repl 94.1 0.21 4.6E-06 51.5 8.6 34 228-261 143-177 (450)
343 PRK14249 phosphate ABC transpo 94.1 0.053 1.1E-06 50.7 3.9 29 219-247 23-51 (251)
344 PRK08506 replicative DNA helic 94.1 0.056 1.2E-06 56.0 4.4 62 208-270 173-235 (472)
345 PRK10619 histidine/lysine/argi 94.1 0.054 1.2E-06 50.9 3.9 29 219-247 24-52 (257)
346 PRK14254 phosphate ABC transpo 94.1 0.053 1.2E-06 52.2 3.9 28 220-247 59-86 (285)
347 TIGR02982 heterocyst_DevA ABC 94.1 0.056 1.2E-06 49.5 3.9 29 219-247 24-52 (220)
348 cd03244 ABCC_MRP_domain2 Domai 94.1 0.056 1.2E-06 49.3 3.9 29 219-247 23-51 (221)
349 PRK13639 cbiO cobalt transport 94.1 0.053 1.1E-06 51.7 3.8 30 218-247 20-49 (275)
350 COG2874 FlaH Predicted ATPases 94.0 0.62 1.3E-05 44.1 10.7 107 225-341 27-136 (235)
351 PF13245 AAA_19: Part of AAA d 94.0 0.075 1.6E-06 41.6 4.0 26 226-251 9-35 (76)
352 COG1120 FepC ABC-type cobalami 94.0 0.053 1.1E-06 52.2 3.8 31 218-248 20-50 (258)
353 PRK07004 replicative DNA helic 94.0 0.077 1.7E-06 54.9 5.3 60 208-267 194-254 (460)
354 PRK13640 cbiO cobalt transport 94.0 0.054 1.2E-06 51.9 3.9 28 220-247 27-54 (282)
355 PRK15112 antimicrobial peptide 94.0 0.054 1.2E-06 51.4 3.8 30 218-247 31-60 (267)
356 COG1125 OpuBA ABC-type proline 94.0 0.094 2E-06 50.9 5.4 39 213-252 13-52 (309)
357 cd03297 ABC_ModC_molybdenum_tr 94.0 0.062 1.3E-06 48.9 4.1 29 218-247 16-44 (214)
358 PRK14252 phosphate ABC transpo 94.0 0.056 1.2E-06 51.1 3.9 31 217-247 33-63 (265)
359 TIGR03522 GldA_ABC_ATP gliding 94.0 0.054 1.2E-06 52.5 3.9 29 219-247 21-49 (301)
360 KOG0057 Mitochondrial Fe/S clu 94.0 0.072 1.6E-06 56.1 4.9 30 221-250 373-402 (591)
361 PRK14264 phosphate ABC transpo 94.0 0.055 1.2E-06 52.6 3.9 30 218-247 63-92 (305)
362 PRK13637 cbiO cobalt transport 94.0 0.056 1.2E-06 52.0 3.9 29 219-247 26-54 (287)
363 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.0 0.055 1.2E-06 46.7 3.5 28 221-248 21-48 (144)
364 PRK13650 cbiO cobalt transport 94.0 0.057 1.2E-06 51.7 3.9 30 218-247 25-54 (279)
365 cd03237 ABC_RNaseL_inhibitor_d 93.9 0.05 1.1E-06 51.4 3.4 26 222-247 21-46 (246)
366 cd03300 ABC_PotA_N PotA is an 93.9 0.06 1.3E-06 49.8 3.8 30 219-248 19-48 (232)
367 cd03291 ABCC_CFTR1 The CFTR su 93.9 0.058 1.3E-06 52.1 3.9 30 218-247 55-84 (282)
368 COG4172 ABC-type uncharacteriz 93.9 0.054 1.2E-06 55.6 3.7 37 214-250 300-337 (534)
369 PRK09452 potA putrescine/sperm 93.9 0.056 1.2E-06 54.5 3.9 30 218-247 32-61 (375)
370 PRK14263 phosphate ABC transpo 93.9 0.087 1.9E-06 49.9 5.0 30 218-247 26-55 (261)
371 PRK13644 cbiO cobalt transport 93.9 0.059 1.3E-06 51.4 3.9 31 218-248 20-50 (274)
372 TIGR02314 ABC_MetN D-methionin 93.9 0.057 1.2E-06 53.8 3.9 30 218-247 23-52 (343)
373 PRK14721 flhF flagellar biosyn 93.9 0.46 9.9E-06 48.9 10.4 29 222-250 187-215 (420)
374 TIGR02142 modC_ABC molybdenum 93.9 0.072 1.6E-06 52.9 4.6 30 218-247 15-44 (354)
375 PRK09580 sufC cysteine desulfu 93.9 0.054 1.2E-06 50.3 3.5 29 220-248 21-49 (248)
376 PRK11000 maltose/maltodextrin 93.9 0.057 1.2E-06 54.1 3.9 30 218-247 21-50 (369)
377 PRK13634 cbiO cobalt transport 93.9 0.06 1.3E-06 51.9 3.9 27 221-247 28-54 (290)
378 PRK11889 flhF flagellar biosyn 93.9 0.72 1.6E-05 47.5 11.6 28 224-251 239-266 (436)
379 COG4167 SapF ABC-type antimicr 93.8 0.055 1.2E-06 50.4 3.3 28 220-247 33-60 (267)
380 cd03299 ABC_ModC_like Archeal 93.8 0.064 1.4E-06 49.8 3.9 30 218-247 17-46 (235)
381 TIGR03873 F420-0_ABC_ATP propo 93.8 0.061 1.3E-06 50.5 3.7 27 221-247 22-48 (256)
382 PRK07773 replicative DNA helic 93.8 0.092 2E-06 58.5 5.6 62 208-269 198-260 (886)
383 cd03288 ABCC_SUR2 The SUR doma 93.8 0.067 1.4E-06 50.4 3.9 29 220-248 41-69 (257)
384 PF07728 AAA_5: AAA domain (dy 93.8 0.14 3E-06 43.1 5.6 22 229-250 2-23 (139)
385 PRK05636 replicative DNA helic 93.8 0.11 2.3E-06 54.5 5.8 59 208-267 246-305 (505)
386 PRK14236 phosphate transporter 93.8 0.066 1.4E-06 50.9 3.9 30 218-247 43-72 (272)
387 COG3638 ABC-type phosphate/pho 93.8 0.11 2.4E-06 49.7 5.3 57 219-276 23-82 (258)
388 PF13086 AAA_11: AAA domain; P 93.7 0.12 2.7E-06 46.1 5.4 50 229-279 20-75 (236)
389 PRK10867 signal recognition pa 93.7 0.71 1.5E-05 47.6 11.5 39 226-264 100-138 (433)
390 PRK13635 cbiO cobalt transport 93.7 0.069 1.5E-06 51.2 3.9 29 219-247 26-54 (279)
391 PF13671 AAA_33: AAA domain; P 93.7 0.92 2E-05 37.9 10.4 21 229-249 2-22 (143)
392 PRK14258 phosphate ABC transpo 93.7 0.07 1.5E-06 50.4 3.8 31 218-248 25-55 (261)
393 PRK00149 dnaA chromosomal repl 93.7 0.15 3.3E-06 52.2 6.5 37 227-263 149-186 (450)
394 PRK11153 metN DL-methionine tr 93.6 0.068 1.5E-06 52.9 3.9 30 218-247 23-52 (343)
395 COG1136 SalX ABC-type antimicr 93.6 0.069 1.5E-06 50.5 3.7 29 218-246 23-51 (226)
396 PRK13536 nodulation factor exp 93.6 0.07 1.5E-06 53.0 3.9 33 216-248 56-89 (340)
397 cd03289 ABCC_CFTR2 The CFTR su 93.6 0.071 1.5E-06 51.3 3.9 28 221-248 25-52 (275)
398 COG3839 MalK ABC-type sugar tr 93.6 0.069 1.5E-06 53.3 3.8 29 219-247 22-50 (338)
399 PRK13537 nodulation ABC transp 93.6 0.069 1.5E-06 52.0 3.8 30 219-248 26-55 (306)
400 PLN00020 ribulose bisphosphate 93.6 0.25 5.5E-06 50.3 7.7 21 229-249 151-171 (413)
401 COG4987 CydC ABC-type transpor 93.6 0.06 1.3E-06 56.6 3.4 30 219-248 357-386 (573)
402 PRK08727 hypothetical protein; 93.6 0.13 2.9E-06 48.0 5.5 51 227-278 42-92 (233)
403 KOG0079 GTP-binding protein H- 93.6 0.14 3E-06 46.0 5.2 41 228-270 10-50 (198)
404 PRK03695 vitamin B12-transport 93.5 0.067 1.5E-06 50.2 3.5 30 218-247 14-43 (248)
405 PRK00300 gmk guanylate kinase; 93.5 0.069 1.5E-06 48.0 3.5 26 224-249 3-28 (205)
406 PRK14246 phosphate ABC transpo 93.5 0.074 1.6E-06 50.3 3.8 30 218-247 28-57 (257)
407 COG0563 Adk Adenylate kinase a 93.5 0.067 1.5E-06 48.5 3.4 53 228-281 2-56 (178)
408 TIGR00959 ffh signal recogniti 93.5 0.84 1.8E-05 47.0 11.6 44 227-270 100-143 (428)
409 PRK08084 DNA replication initi 93.5 0.17 3.7E-06 47.4 6.1 26 225-250 44-69 (235)
410 TIGR03263 guanyl_kin guanylate 93.5 0.064 1.4E-06 47.2 3.0 23 226-248 1-23 (180)
411 PRK08233 hypothetical protein; 93.5 0.076 1.7E-06 46.4 3.5 25 225-249 2-26 (182)
412 PF00308 Bac_DnaA: Bacterial d 93.5 0.2 4.2E-06 46.6 6.4 35 227-261 35-70 (219)
413 TIGR00235 udk uridine kinase. 93.4 0.069 1.5E-06 48.7 3.3 24 225-248 5-28 (207)
414 PRK14257 phosphate ABC transpo 93.4 0.078 1.7E-06 52.4 3.9 30 219-248 101-130 (329)
415 PRK13633 cobalt transporter AT 93.4 0.078 1.7E-06 50.7 3.8 30 219-248 29-58 (280)
416 PRK13631 cbiO cobalt transport 93.4 0.079 1.7E-06 52.1 3.9 27 221-247 47-73 (320)
417 PRK06893 DNA replication initi 93.4 0.12 2.5E-06 48.3 4.8 25 228-252 41-65 (229)
418 PRK05703 flhF flagellar biosyn 93.4 0.96 2.1E-05 46.4 11.9 29 223-251 218-246 (424)
419 TIGR03258 PhnT 2-aminoethylpho 93.4 0.079 1.7E-06 53.1 3.9 30 218-247 23-52 (362)
420 PRK13652 cbiO cobalt transport 93.4 0.083 1.8E-06 50.4 3.9 31 218-248 22-52 (277)
421 PRK10636 putative ABC transpor 93.4 0.07 1.5E-06 57.2 3.8 30 218-247 19-48 (638)
422 PRK11607 potG putrescine trans 93.4 0.08 1.7E-06 53.4 3.9 29 219-247 38-66 (377)
423 PRK13642 cbiO cobalt transport 93.4 0.083 1.8E-06 50.4 3.9 27 221-247 28-54 (277)
424 TIGR03269 met_CoM_red_A2 methy 93.3 0.078 1.7E-06 55.0 3.8 31 218-248 18-48 (520)
425 PF01583 APS_kinase: Adenylyls 93.3 0.31 6.7E-06 43.6 7.1 89 225-342 1-89 (156)
426 PRK08840 replicative DNA helic 93.3 0.12 2.5E-06 53.7 5.1 57 208-265 198-255 (464)
427 PLN03073 ABC transporter F fam 93.3 0.07 1.5E-06 58.1 3.6 30 218-247 195-224 (718)
428 PRK11176 lipid transporter ATP 93.2 0.08 1.7E-06 55.5 3.8 31 218-248 361-391 (582)
429 TIGR01526 nadR_NMN_Atrans nico 93.2 0.27 5.8E-06 48.6 7.3 24 226-249 162-185 (325)
430 PRK13636 cbiO cobalt transport 93.2 0.091 2E-06 50.4 3.9 30 218-247 24-53 (283)
431 TIGR02322 phosphon_PhnN phosph 93.2 0.089 1.9E-06 46.4 3.5 24 226-249 1-24 (179)
432 PRK06217 hypothetical protein; 93.2 0.087 1.9E-06 47.1 3.4 23 227-249 2-24 (183)
433 PRK11147 ABC transporter ATPas 93.1 0.079 1.7E-06 56.6 3.6 30 218-247 21-50 (635)
434 PRK06995 flhF flagellar biosyn 93.1 0.16 3.5E-06 53.0 5.7 34 222-255 252-285 (484)
435 PRK11174 cysteine/glutathione 93.1 0.084 1.8E-06 55.5 3.7 30 219-248 369-398 (588)
436 TIGR01193 bacteriocin_ABC ABC- 93.1 0.086 1.9E-06 56.8 3.9 31 218-248 492-522 (708)
437 PF12846 AAA_10: AAA-like doma 93.1 0.21 4.5E-06 46.6 6.0 44 228-275 3-46 (304)
438 PRK15064 ABC transporter ATP-b 93.1 0.09 1.9E-06 54.8 3.8 29 219-247 20-48 (530)
439 PRK10762 D-ribose transporter 93.1 0.086 1.9E-06 54.5 3.7 30 218-247 22-51 (501)
440 TIGR01186 proV glycine betaine 93.1 0.092 2E-06 52.8 3.8 31 218-248 11-41 (363)
441 COG4181 Predicted ABC-type tra 93.0 0.092 2E-06 48.4 3.4 26 221-246 31-56 (228)
442 COG1122 CbiO ABC-type cobalt t 93.0 0.1 2.2E-06 49.5 3.8 29 218-246 22-50 (235)
443 PRK15064 ABC transporter ATP-b 93.0 0.093 2E-06 54.7 3.8 30 218-247 337-366 (530)
444 PRK14530 adenylate kinase; Pro 93.0 0.1 2.2E-06 47.8 3.7 25 225-249 2-26 (215)
445 PRK14531 adenylate kinase; Pro 92.9 0.099 2.2E-06 46.8 3.5 23 227-249 3-25 (183)
446 PRK06904 replicative DNA helic 92.9 0.13 2.8E-06 53.4 4.8 60 208-268 202-262 (472)
447 PRK11819 putative ABC transpor 92.9 0.096 2.1E-06 55.0 3.8 29 219-247 26-54 (556)
448 TIGR03499 FlhF flagellar biosy 92.9 0.19 4E-06 48.6 5.5 31 223-253 191-221 (282)
449 PTZ00301 uridine kinase; Provi 92.9 0.15 3.3E-06 47.3 4.8 22 229-250 6-27 (210)
450 TIGR03796 NHPM_micro_ABC1 NHPM 92.9 0.089 1.9E-06 56.7 3.6 30 219-248 498-527 (710)
451 PRK10938 putative molybdenum t 92.9 0.096 2.1E-06 53.9 3.7 32 216-247 18-50 (490)
452 TIGR00750 lao LAO/AO transport 92.9 0.18 3.8E-06 49.0 5.4 31 221-251 29-59 (300)
453 PRK05480 uridine/cytidine kina 92.8 0.11 2.4E-06 47.1 3.7 27 224-250 4-30 (209)
454 PRK10636 putative ABC transpor 92.8 0.097 2.1E-06 56.1 3.8 30 219-248 331-360 (638)
455 PRK09536 btuD corrinoid ABC tr 92.8 0.1 2.3E-06 53.1 3.8 29 220-248 23-51 (402)
456 PRK09435 membrane ATPase/prote 92.8 0.87 1.9E-05 45.4 10.2 29 223-251 53-81 (332)
457 PRK15134 microcin C ABC transp 92.8 0.099 2.2E-06 54.4 3.7 31 218-248 27-57 (529)
458 cd02025 PanK Pantothenate kina 92.8 0.15 3.3E-06 47.4 4.6 22 229-250 2-23 (220)
459 PRK06321 replicative DNA helic 92.8 0.15 3.3E-06 53.0 5.0 60 208-267 207-267 (472)
460 COG0488 Uup ATPase components 92.8 0.1 2.2E-06 55.1 3.7 31 218-248 340-370 (530)
461 cd03280 ABC_MutS2 MutS2 homolo 92.8 0.15 3.2E-06 46.3 4.4 34 215-248 16-50 (200)
462 TIGR02633 xylG D-xylose ABC tr 92.8 0.099 2.2E-06 53.9 3.7 29 219-247 20-48 (500)
463 CHL00195 ycf46 Ycf46; Provisio 92.8 0.56 1.2E-05 49.1 9.2 22 228-249 261-282 (489)
464 TIGR00455 apsK adenylylsulfate 92.7 0.94 2E-05 40.2 9.5 27 224-250 16-42 (184)
465 KOG4658 Apoptotic ATPase [Sign 92.7 0.42 9E-06 53.5 8.6 59 216-276 170-230 (889)
466 PRK10790 putative multidrug tr 92.7 0.1 2.2E-06 54.9 3.7 31 218-248 359-389 (592)
467 PRK10261 glutathione transport 92.7 0.11 2.3E-06 55.6 3.9 31 218-248 34-64 (623)
468 cd04138 H_N_K_Ras_like H-Ras/N 92.7 0.094 2E-06 44.0 2.8 22 228-249 3-24 (162)
469 PRK10078 ribose 1,5-bisphospho 92.7 0.11 2.3E-06 46.6 3.3 24 225-248 1-24 (186)
470 PRK10789 putative multidrug tr 92.7 0.11 2.3E-06 54.7 3.8 30 219-248 334-363 (569)
471 TIGR03797 NHPM_micro_ABC2 NHPM 92.6 0.11 2.4E-06 55.8 3.9 31 218-248 471-501 (686)
472 PF01926 MMR_HSR1: 50S ribosom 92.6 0.11 2.4E-06 42.4 3.0 21 228-248 1-21 (116)
473 PRK09700 D-allose transporter 92.6 0.11 2.4E-06 53.8 3.7 29 219-247 282-310 (510)
474 TIGR03375 type_I_sec_LssB type 92.6 0.11 2.3E-06 56.0 3.7 30 218-247 483-512 (694)
475 TIGR03420 DnaA_homol_Hda DnaA 92.5 0.2 4.3E-06 45.5 4.9 28 223-250 35-62 (226)
476 cd03243 ABC_MutS_homologs The 92.5 0.13 2.7E-06 46.8 3.6 29 222-250 25-53 (202)
477 PRK11147 ABC transporter ATPas 92.5 0.11 2.4E-06 55.5 3.7 29 219-247 338-366 (635)
478 PF03205 MobB: Molybdopterin g 92.5 0.21 4.6E-06 43.3 4.8 52 228-281 2-57 (140)
479 COG2274 SunT ABC-type bacterio 92.5 0.11 2.4E-06 56.6 3.6 30 219-248 492-521 (709)
480 PRK13549 xylose transporter AT 92.5 0.11 2.5E-06 53.7 3.6 29 219-247 24-52 (506)
481 PRK10070 glycine betaine trans 92.4 0.12 2.7E-06 52.5 3.7 31 218-248 46-76 (400)
482 TIGR02633 xylG D-xylose ABC tr 92.4 0.11 2.5E-06 53.5 3.5 33 215-247 274-307 (500)
483 PHA00729 NTP-binding motif con 92.4 0.061 1.3E-06 50.8 1.4 23 227-249 18-40 (226)
484 TIGR02204 MsbA_rel ABC transpo 92.3 0.13 2.8E-06 53.8 3.9 29 220-248 360-388 (576)
485 PF03266 NTPase_1: NTPase; In 92.3 0.15 3.1E-06 45.8 3.7 24 228-251 1-24 (168)
486 PRK10522 multidrug transporter 92.3 0.13 2.7E-06 53.9 3.8 30 218-247 341-370 (547)
487 COG1132 MdlB ABC-type multidru 92.3 0.13 2.8E-06 53.9 3.9 30 219-248 348-377 (567)
488 COG3854 SpoIIIAA ncharacterize 92.3 0.18 3.9E-06 48.5 4.4 24 229-252 140-163 (308)
489 cd02028 UMPK_like Uridine mono 92.3 0.22 4.7E-06 44.8 4.8 22 229-250 2-23 (179)
490 cd01428 ADK Adenylate kinase ( 92.3 0.12 2.7E-06 45.7 3.1 22 228-249 1-22 (194)
491 PRK09700 D-allose transporter 92.3 0.12 2.7E-06 53.4 3.6 30 218-247 23-52 (510)
492 TIGR03269 met_CoM_red_A2 methy 92.3 0.14 2.9E-06 53.3 3.9 32 216-247 299-331 (520)
493 TIGR03719 ABC_ABC_ChvD ATP-bin 92.2 0.13 2.8E-06 53.9 3.8 30 218-247 23-52 (552)
494 TIGR02857 CydD thiol reductant 92.2 0.13 2.9E-06 53.3 3.8 30 219-248 341-370 (529)
495 PRK08006 replicative DNA helic 92.2 0.21 4.5E-06 52.0 5.2 57 208-265 205-262 (471)
496 cd04155 Arl3 Arl3 subfamily. 92.2 0.12 2.6E-06 44.5 3.0 27 222-248 10-36 (173)
497 TIGR00101 ureG urease accessor 92.2 1 2.2E-05 41.3 9.2 23 228-250 3-25 (199)
498 PRK10982 galactose/methyl gala 92.2 0.13 2.8E-06 53.0 3.6 29 219-247 17-45 (491)
499 PRK00889 adenylylsulfate kinas 92.2 0.26 5.7E-06 43.4 5.1 26 225-250 3-28 (175)
500 TIGR01842 type_I_sec_PrtD type 92.1 0.14 3E-06 53.5 3.8 31 218-248 336-366 (544)
No 1
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.6e-73 Score=555.11 Aligned_cols=254 Identities=72% Similarity=1.111 Sum_probs=243.8
Q ss_pred ceeeEEEEECCEEEEEeCC--CChhhhhceEEeecCc-eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceec
Q 018957 86 AIGQVCQVIGAVVDVRFDE--GLPPILTALEVVDHSV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP 162 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~--glp~i~~~lev~~~~~-~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~Vp 162 (348)
+.|+|+||+|+||||+|+. .+|.+++++++..... .+++||++|+|++.||+++|+.|+||.+|+.|.+||+|++||
T Consensus 2 ~~G~vvqv~g~VvdV~F~~~~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~rg~~v~dtg~pi~VP 81 (468)
T COG0055 2 NKGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLVRGLEVIDTGKPISVP 81 (468)
T ss_pred CCceEEEEEeeEEEEEecCcccCchhhhhheeccCCcceEeeehHHHhCCCeEEEEEecCccCcccCcEEecCCCceEEe
Confidence 4699999999999999983 4999999999876532 589999999999999999999999999999999999999999
Q ss_pred CCccccccEEeeeCcccccCCCCccc--ccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHH
Q 018957 163 VGRVTLGRIMNVIGEPIDEKGDLKTE--HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (348)
Q Consensus 163 VG~~lLGRViD~lG~PiD~~g~i~~~--~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT 240 (348)
||+++||||+|++|+|||+.+++... .+||||+++|...++.+..|+|+||||+||+|+|+.||+|+|||||+|||||
T Consensus 82 VG~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLFGGAGVGKT 161 (468)
T COG0055 82 VGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKT 161 (468)
T ss_pred cchhhcccchhccCCcccccCCCCccccceeeccCCCCchhhcccchhhhhhCceEEEEecccccCceeeeeccCCccce
Confidence 99999999999999999999999765 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHH
Q 018957 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320 (348)
Q Consensus 241 ~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAE 320 (348)
+|++++|+|+++.|++++||+++|||.||.+|+|+||++++++ ++|++|++||||||++|+|++++|+|+||
T Consensus 162 Vl~~ELI~Nia~~h~g~SVFaGvGERtREGndLy~Em~es~vl--------~ktalv~gQMNEpPGaR~RValtGlT~AE 233 (468)
T COG0055 162 VLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVL--------DKTALVFGQMNEPPGARMRVALTGLTMAE 233 (468)
T ss_pred eeHHHHHHHHHHHcCCeEEEEeccccccchHHHHHHHHhcCCC--------CceeEEEeecCCCCcceeeehhhhhhHHH
Confidence 9999999999999999999999999999999999999999976 59999999999999999999999999999
Q ss_pred HhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 321 HFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 321 yfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
||||++|+|||||+|||+||.||++|+
T Consensus 234 yfRD~~gqdVLlFIDNIfRftQAGsEV 260 (468)
T COG0055 234 YFRDEEGQDVLLFIDNIFRFTQAGSEV 260 (468)
T ss_pred HhhcccCCeEEEEehhhhHHhhcchHH
Confidence 999988999999999999999999996
No 2
>KOG1350 consensus F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=2.2e-73 Score=545.32 Aligned_cols=264 Identities=78% Similarity=1.189 Sum_probs=255.9
Q ss_pred ccCCceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCcee
Q 018957 82 TGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITV 161 (348)
Q Consensus 82 ~~~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~V 161 (348)
+...+.|+|.+|+|+|||++|++++|+|++++++.+.+.++++||+||+|+|.||+++|++|+||.+|+.|.+||.|++|
T Consensus 47 ~a~~~~G~i~avIGavvDv~F~~~~P~ilNaLev~~~~~~lvlEV~qhlG~n~VR~iAMdgTEGLvRG~~VlDtG~Pi~i 126 (521)
T KOG1350|consen 47 AAKKNKGRIVAVIGAVVDVQFEEGLPPILNALEVKGRDTRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPISI 126 (521)
T ss_pred hhcccCCcEEEEEeeeEEEecCCCCcchhhceeecCCCceeeeHHHHHhCcCeEEEEEecCchhhhcCcccccCCCceee
Confidence 45666899999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred cCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHH
Q 018957 162 PVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV 241 (348)
Q Consensus 162 pVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~ 241 (348)
|||++.||||+|++|+|+|+.|+++...+.|||..+|.+.+.....|+|+||||++|+|.|+.||+|||+||++|+|||+
T Consensus 127 pVG~~tLGRI~NViGePiDerGpi~s~~~~~IHaeaP~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFGGAGVGKTV 206 (521)
T KOG1350|consen 127 PVGPETLGRIMNVIGEPIDERGPIKSKKYSPIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 206 (521)
T ss_pred ecCHHHHhhHHHhcCCcccccCCcccccccccccCChhHhhhcccHHHHhhcceeeeeecccccCCeeeeeccCCcccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHH
Q 018957 242 LIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH 321 (348)
Q Consensus 242 L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEy 321 (348)
|++++|+|+||+|++++||+++|||.||.+|+|+||+|+|++.+.++ -+|..+|+++||+||++|.|+++||+|+|||
T Consensus 207 lImELINNiAKaHGGySVF~GvGERTREGNDLY~EM~E~gVI~l~~~--~SKvaLV~GQMNePPGARaRV~LTgLTvAEY 284 (521)
T KOG1350|consen 207 LIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLEGE--TSKVALVYGQMNEPPGARARVALTGLTVAEY 284 (521)
T ss_pred eHHHHHHHHHHhcCCeEEeeccccccccccHHHHHHHhcCeeeccCC--cceEEEEeeccCCCCCceeeeeeecccHHHH
Confidence 99999999999999999999999999999999999999999987653 3799999999999999999999999999999
Q ss_pred hhhcCCCcEEEEEechhHHHhhhccc
Q 018957 322 FRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 322 frd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|||.+|+|||||+|||+||.||++|+
T Consensus 285 FRD~egQDVLLFIDNIFRFtQAGSEV 310 (521)
T KOG1350|consen 285 FRDQEGQDVLLFIDNIFRFTQAGSEV 310 (521)
T ss_pred hhccccceEEEeehhhhhhhccchHH
Confidence 99999999999999999999999986
No 3
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=2.8e-71 Score=558.48 Aligned_cols=251 Identities=49% Similarity=0.839 Sum_probs=239.2
Q ss_pred eeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCccc
Q 018957 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVT 167 (348)
Q Consensus 88 G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~~l 167 (348)
|+|++|+|+||||+|++++|++++.+++.+ .+.+.+||+++++++.+++++|++++||+.|+.|..||++++||||++|
T Consensus 1 G~i~~i~g~vvdv~f~~~~p~i~~~l~~~~-~~~~~~EVv~~l~~~~v~l~~l~~t~Gi~~G~~V~~tg~~~~VpVg~~l 79 (449)
T TIGR03305 1 GHVVAVRGSIVDVRFDGELPAIHSVLRAGR-EGEVVVEVLSQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPT 79 (449)
T ss_pred CeEEEEEcCEEEEEeCCCCcchhheEEecC-CCcEEEeeeeEecCCeEEEEEccCcccCCCCCEEEecCCceEEEcChhh
Confidence 799999999999999878999998888754 4578899999999999999999999999999999999999999999999
Q ss_pred cccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 168 LGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 168 LGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
||||+|++|+|||+++++...+++|++++||+|++|.+++++|+||||+||+|+||+||||++|||++|+|||+|+++++
T Consensus 80 LGRVlD~~G~PiD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~L~TGIr~ID~l~pigkGQr~~Ifg~~G~GKt~l~~~~~ 159 (449)
T TIGR03305 80 LSRMFDVFGNTIDRREPPKDVEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVGKTVLLTEMI 159 (449)
T ss_pred cCCEEccCccccCCCCCCCCccccchhcCCCCchhcccCCcccccCceeeccccccccCCEEEeecCCCCChhHHHHHHH
Confidence 99999999999999988777778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCC
Q 018957 248 NNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEG 327 (348)
Q Consensus 248 ~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G 327 (348)
+|++++|.+++||++||||+||++||+++|.+.++ ++||++|++|+|+||.+|++++|+|+|+||||||++|
T Consensus 160 ~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~--------l~rtvvv~~ts~~~~~~r~~~~~~a~tiAEyfrd~~G 231 (449)
T TIGR03305 160 HNMVGQHQGVSIFCGIGERCREGEELYREMKEAGV--------LDNTVMVFGQMNEPPGARFRVGHTALTMAEYFRDDEK 231 (449)
T ss_pred HHHHhcCCCEEEEEEeccCcHHHHHHHHHHhhccc--------cceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99876678999999999999999999999988774 4799999999999999999999999999999999789
Q ss_pred CcEEEEEechhHHHhhhccc
Q 018957 328 QDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 328 ~dVLli~DslTR~A~A~~e~ 347 (348)
+||||++|||||||+|++||
T Consensus 232 ~~VLl~~DslTR~A~A~REi 251 (449)
T TIGR03305 232 QDVLLLIDNIFRFIQAGSEV 251 (449)
T ss_pred CceEEEecChHHHHHHHHHH
Confidence 99999999999999999997
No 4
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=5.9e-68 Score=537.77 Aligned_cols=261 Identities=63% Similarity=0.991 Sum_probs=239.0
Q ss_pred CceeeEEEEECCEEEEEeCC-CChhhhhceEEeecC--c---eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCC
Q 018957 85 GAIGQVCQVIGAVVDVRFDE-GLPPILTALEVVDHS--V---RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSP 158 (348)
Q Consensus 85 ~~~G~V~~V~G~vV~v~f~~-glp~i~~~lev~~~~--~---~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~ 158 (348)
..+|+|++|.|.+++++|+. .+|++.+.+++...+ . .+.+||+++.+++.+++++|++++||+.|++|..|+++
T Consensus 14 ~~~G~V~~v~G~viev~~~~~~iP~ig~~~~i~~~~~~~~~~~~~~EVvg~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~ 93 (494)
T CHL00060 14 KNLGRITQIIGPVLDVAFPPGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTGAP 93 (494)
T ss_pred ccceEEEEEEccEEEEEecCCCcCCcCCEEEEccCCCCCccceEEEEEEEEeCCCeEEEEeccCccCCCCCCEEEeCCCc
Confidence 34699999999999999984 588887666663312 1 47889999999899999999999999999999999999
Q ss_pred ceecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCc
Q 018957 159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG 238 (348)
Q Consensus 159 l~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvG 238 (348)
++||||++|||||+|++|+|||+++++...+++||++.||+|++|.++++||+||||+||+|+|||||||+||||++|+|
T Consensus 94 ~~vpvg~~lLGRVid~~G~piDg~~~~~~~~~~pi~~~~p~~~~R~~i~e~L~TGIraID~l~pigkGQR~gIfgg~GvG 173 (494)
T CHL00060 94 LSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVG 173 (494)
T ss_pred ceeecchhhcCCEEeecCcccCCCCCCCCCccccccCCCcCchhcccccceeecCceeeeccCCcccCCEEeeecCCCCC
Confidence 99999999999999999999999988877778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHH
Q 018957 239 KTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318 (348)
Q Consensus 239 KT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~ti 318 (348)
||+|+.++++|++++|+|+|||++||||+||+.|||+++.+.++++.. ...++|+++|++|+|+||.+|++++|+|+|+
T Consensus 174 Ks~L~~~~~~~~~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~-~~~~~rsvvv~atsd~p~~~R~~a~~~A~ti 252 (494)
T CHL00060 174 KTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQ-NIAESKVALVYGQMNEPPGARMRVGLTALTM 252 (494)
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEEeccCchHHHHHHHHHHhcCccccC-cccccceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 999999999998877789999999999999999999999998876421 0136899999999999999999999999999
Q ss_pred HHHhhhcCCC-cEEEEEechhHHHhhhccc
Q 018957 319 AEHFRDAEGQ-DVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 319 AEyfrd~~G~-dVLli~DslTR~A~A~~e~ 347 (348)
|||||| +|+ ||||+||||||||+|++||
T Consensus 253 AEyfrd-~g~~~VLll~DslTR~A~A~REI 281 (494)
T CHL00060 253 AEYFRD-VNKQDVLLFIDNIFRFVQAGSEV 281 (494)
T ss_pred HHHHHH-cCCCCEEEEcccchHHHHHHHHH
Confidence 999999 575 9999999999999999997
No 5
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=2.5e-67 Score=531.15 Aligned_cols=254 Identities=71% Similarity=1.110 Sum_probs=235.3
Q ss_pred ceeeEEEEECCEEEEEeCC-CChhhhhceEEe-ecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecC
Q 018957 86 AIGQVCQVIGAVVDVRFDE-GLPPILTALEVV-DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~-glp~i~~~lev~-~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpV 163 (348)
++|+|++|.|+++++++.. .+|.+.+.+++. ..+..+.+||+++++++.+.+++|+++.||+.|+.|..||++++||+
T Consensus 2 ~~G~V~~i~g~~v~~~~~~~~~~~ige~~~i~~~~~~~~~~EVv~~~~~~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~v 81 (463)
T PRK09280 2 NTGKIVQVIGPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGSTDGLVRGMEVIDTGAPISVPV 81 (463)
T ss_pred CccEEEEEEccEEEEEeCCCCCccccCEEEEEeCCCCeEEEEeeEEecCCeEEEEEecCccCCCCCCEEEeCCCceEEEc
Confidence 4799999999999999764 356666445552 22446889999989999999999999999999999999999999999
Q ss_pred CccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHH
Q 018957 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (348)
Q Consensus 164 G~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~ 243 (348)
|++|||||+|++|+|||+.+++...++||+++++|+|++|..+++||.||||+||+|+|||||||+||||++|+|||+|+
T Consensus 82 g~~lLGRViD~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGQR~gIfa~~GvGKt~Ll 161 (463)
T PRK09280 82 GKATLGRIFNVLGEPIDEKGPIGAEERWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLI 161 (463)
T ss_pred ChhhcCCEEeeeccccCCCCCcCccceecccCCCCChHHhCCccceeccCCeeecccCCcccCCEEEeecCCCCChhHHH
Confidence 99999999999999999998887778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhh
Q 018957 244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (348)
Q Consensus 244 ~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfr 323 (348)
.++++|+++++.+++||++||||+||+.||++++.+.+. ++||++|++|||+||.+|++++|+|+|+|||||
T Consensus 162 ~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~--------l~rsvvV~atsd~p~~~r~~a~~~a~tiAEyfr 233 (463)
T PRK09280 162 QELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGV--------LDKTALVFGQMNEPPGARLRVALTGLTMAEYFR 233 (463)
T ss_pred HHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCC--------cceeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999977667899999999999999999999988764 579999999999999999999999999999999
Q ss_pred hcCCCcEEEEEechhHHHhhhccc
Q 018957 324 DAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 324 d~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|++|+||||+|||+||||+|+|||
T Consensus 234 d~~G~~VLll~DslTR~A~A~REi 257 (463)
T PRK09280 234 DVEGQDVLLFIDNIFRFTQAGSEV 257 (463)
T ss_pred HhcCCceEEEecchHHHHHHHHHH
Confidence 977999999999999999999997
No 6
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=100.00 E-value=6.7e-67 Score=526.88 Aligned_cols=253 Identities=70% Similarity=1.100 Sum_probs=234.0
Q ss_pred eeeEEEEECCEEEEEeCC-CChhhhhceEEeecCc-eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957 87 IGQVCQVIGAVVDVRFDE-GLPPILTALEVVDHSV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (348)
Q Consensus 87 ~G~V~~V~G~vV~v~f~~-glp~i~~~lev~~~~~-~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG 164 (348)
+|+|++|.|.++++.|+. .++.+.+.+++...+. .+.+||+.+++++.+++++|+++.||+.|+.|..|++++++|||
T Consensus 2 ~G~v~~v~g~~ie~~~~~~~ig~~~~~l~i~~~~~~~~~~eVv~~~~~~~v~l~~l~~~~gi~~G~~V~~t~~~~~i~vg 81 (461)
T TIGR01039 2 KGKVVQVIGPVVDVEFEQGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGSTDGLVRGLEVIDTGAPISVPVG 81 (461)
T ss_pred ccEEEEEEeeEEEEEECCCCCcchheEEEEecCCCceEEEEeeeeeCCCeEEEEEccCcccCCCCCEEEeCCCceEEEcC
Confidence 599999999999999873 4566655556633122 48889999999999999999999999999999999999999999
Q ss_pred ccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHH
Q 018957 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (348)
Q Consensus 165 ~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~ 244 (348)
++|||||+|++|+|||+++++....+||+++++|+|++|.++++||+||||+||+|+|||||||+||||++|+|||+|+.
T Consensus 82 ~~lLGRViD~~G~pid~~~~~~~~~~~pi~~~~p~~~~R~~~~e~l~TGiraID~l~pig~GQr~~If~~~G~GKt~L~~ 161 (461)
T TIGR01039 82 KETLGRIFNVLGEPIDEKGPIPAKERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQ 161 (461)
T ss_pred hhhcCCEEccCCcccCCCCCCCCCcccccccCCCChhHcCCcccccccCceeecccCCcccCCEEEeecCCCCChHHHHH
Confidence 99999999999999999988776678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhh
Q 018957 245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324 (348)
Q Consensus 245 ~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd 324 (348)
++++|+++++.+++||++||||+||+.||++++.+.++ ++||++|++|||+||.+|++++|+|+|+||||||
T Consensus 162 ~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~--------l~rtvvV~atsd~p~~~R~~a~~~a~tiAEyfrd 233 (461)
T TIGR01039 162 ELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGV--------IDKTALVYGQMNEPPGARMRVALTGLTMAEYFRD 233 (461)
T ss_pred HHHHHHHhcCCCeEEEEEecCCchHHHHHHHHHHhcCC--------cceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999877667899999999999999999999987764 5799999999999999999999999999999999
Q ss_pred cCCCcEEEEEechhHHHhhhccc
Q 018957 325 AEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 325 ~~G~dVLli~DslTR~A~A~~e~ 347 (348)
++|+||||+|||+||||+|+|||
T Consensus 234 ~~G~~VLll~DslTR~A~A~REi 256 (461)
T TIGR01039 234 EQGQDVLLFIDNIFRFTQAGSEV 256 (461)
T ss_pred hcCCeeEEEecchhHHHHHHHHH
Confidence 78999999999999999999997
No 7
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=9e-67 Score=527.91 Aligned_cols=254 Identities=60% Similarity=0.948 Sum_probs=233.2
Q ss_pred ceeeEEEEECCEEEEEeCCC-ChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957 86 AIGQVCQVIGAVVDVRFDEG-LPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~g-lp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG 164 (348)
..|+|++|.|+++++++..+ ++.+.+.+++...+....+||+++++++.+.+++|+++.||++|+.|..||++++||||
T Consensus 2 ~~G~V~~i~g~vi~v~g~~~~~~~ige~~~i~~~~~~~~~eVv~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg 81 (461)
T PRK12597 2 MIGRIIKIRGDVVDVEFEEGALPPINQALTVHDDGGPTLLEVKQHLDETTVRAIALGSTSGLARGDEVRNTGGPIEVPVG 81 (461)
T ss_pred CccEEEEEECcEEEEEECCCCCcCccCEEEEecCCCcEEEEEEEEcCCCeEEEEEecCccCCCCCCEEEeCCCceEEEcC
Confidence 36999999999999987643 34454334442323457889999999999999999999999999999999999999999
Q ss_pred ccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHH
Q 018957 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (348)
Q Consensus 165 ~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~ 244 (348)
++|||||+|++|+|||+.+++....+||+++.||||++|.++++||+||||+||+|+|||||||+||||++|+|||+|+.
T Consensus 82 ~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~l~TGir~ID~l~pigkGQR~gIfa~~G~GKt~Ll~ 161 (461)
T PRK12597 82 EAVLGRLLDVLGEPLDGGPPLPAEERRPIHSTIPPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGGAGVGKTVLMM 161 (461)
T ss_pred hhhcCCEEeeccccccCCCCCCCcceeeccCCCcChhhcCCcCcceecCCeeecccCccccCCEEEeecCCCCChhHHHH
Confidence 99999999999999999988877778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhh
Q 018957 245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324 (348)
Q Consensus 245 ~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd 324 (348)
++++|++++|.+++||++||||+||+.||++++.+.+. ++||++|++|+|+||.+|++++|+|+|+||||||
T Consensus 162 ~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~--------l~rsvvv~atsd~~~~~R~~a~~~a~tiAEyfrd 233 (461)
T PRK12597 162 ELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGV--------LDKTVMVYGQMNEPPGARMRVVLTGLTIAEYLRD 233 (461)
T ss_pred HHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCC--------cceeEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999987788999999999999999999999988764 4799999999999999999999999999999999
Q ss_pred cCCCcEEEEEechhHHHhhhccc
Q 018957 325 AEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 325 ~~G~dVLli~DslTR~A~A~~e~ 347 (348)
++|+||||++||+||||+|+|||
T Consensus 234 ~~G~~VLl~~DslTR~A~A~REi 256 (461)
T PRK12597 234 EEKEDVLLFIDNIFRFVQAGSEV 256 (461)
T ss_pred hcCCceEEEeccchHHHHHHHHH
Confidence 44999999999999999999997
No 8
>PTZ00185 ATPase alpha subunit; Provisional
Probab=100.00 E-value=2.7e-66 Score=525.20 Aligned_cols=258 Identities=22% Similarity=0.355 Sum_probs=234.4
Q ss_pred ccccCCceeeEEEEECCEEEEEeCCCChhhhhceEEeec---CceeEEEEeeeccCc-eEEEEeecCCCCCCCCCEEEec
Q 018957 80 EFTGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH---SVRLVLEVAQHMGEG-VVRTIAMDGTEGLVRGQRVLNT 155 (348)
Q Consensus 80 ~~~~~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~---~~~~~~EVv~~lg~~-~V~~i~~~~t~GL~~G~~V~~t 155 (348)
-|+...++|+|++|.|.|+.|+|.+|++++. .-|++.+ +.....+++.+++++ .+.+++|++++||+.|++|.+|
T Consensus 33 ~~~~~~~~G~V~~v~~gia~v~~v~Gl~~~~-~gElv~f~~~~~~~~~G~vlnl~~d~~v~~v~lg~~~gI~~G~~V~~t 111 (574)
T PTZ00185 33 FFKATEMIGYVHSIDGTIATLIPAPGNPGVA-YNTIIMIQVSPTTFAAGLVFNLEKDGRIGIILMDNITEVQSGQKVMAT 111 (574)
T ss_pred hhhhheeeEEEEEEcCeEEEEeecCCCcccc-cCceEEEEcCCCCeEEEEEEEecCCCeEEEEEecCccCCCCCCEEEEC
Confidence 5677888999999977799998888999986 3455544 334567888899988 6999999999999999999999
Q ss_pred CCCceecCCccccccEEeeeCcccccC------CCCccc-ccccccCCCcchhhcccccceeecceeeeeceeecccCce
Q 018957 156 GSPITVPVGRVTLGRIMNVIGEPIDEK------GDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGK 228 (348)
Q Consensus 156 g~~l~VpVG~~lLGRViD~lG~PiD~~------g~i~~~-~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr 228 (348)
|++++||||++|||||+|++|+|||++ +++... .++||+.+||++++|.++++||+||||+||+|+|||||||
T Consensus 112 g~~~~VpVG~~lLGRVvD~lG~PIDg~~~~~~~g~i~~~~~~~pIe~~ap~~~~R~~v~epL~TGIkaID~LiPIGRGQR 191 (574)
T PTZ00185 112 GKLLYIPVGAGVLGKVVNPLGHEVPVGLLTRSRALLESEQTLGKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQR 191 (574)
T ss_pred CCccEEECCcccccCEECCCCcccCCCCccccCCCCCcccccccccCCCcChhhcCCCCCcCcCCceeeeccccccCCCE
Confidence 999999999999999999999999987 445444 4779999999999999999999999999999999999999
Q ss_pred eEeecCCCCcHHHHHHHHHHHHHh-------hcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecC
Q 018957 229 IGLFGGAGVGKTVLIMELINNVAK-------AHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQM 301 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n~a~-------~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~ts 301 (348)
++||||+|+|||+|+.++|.||++ .+.++|||++||||+||+.+++++|.+.|++ +||++|++++
T Consensus 192 ~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL--------~~TvVV~AtA 263 (574)
T PTZ00185 192 ELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGAL--------RYTTVMAATA 263 (574)
T ss_pred EEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCc--------cceEEEEECC
Confidence 999999999999998888888762 2458999999999999999999999999854 6999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 302 NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 302 dep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|+||.+|+++||+|||+|||||| +|+|||++||||||||+|++||
T Consensus 264 dep~~~r~~Apy~a~tiAEYFrd-~GkdVLiv~DDLTr~A~A~REI 308 (574)
T PTZ00185 264 AEPAGLQYLAPYSGVTMGEYFMN-RGRHCLCVYDDLSKQAVAYRQI 308 (574)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEcCchHHHHHHHHH
Confidence 99999999999999999999999 8999999999999999999996
No 9
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=1.1e-65 Score=521.98 Aligned_cols=247 Identities=28% Similarity=0.454 Sum_probs=222.8
Q ss_pred CceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (348)
Q Consensus 85 ~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG 164 (348)
..+|+|++|.|+++.+. |+|.+. ..|+.....+...||+. ++++.+.+++|+++.||+.|+.|.+||++++||||
T Consensus 26 ~~~G~V~~v~g~ii~v~---gl~~~~-~gEl~~i~~~~~g~Vi~-l~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg 100 (497)
T TIGR03324 26 QEVGTVESVSTGIARVH---GLPGVG-FEELLRFPGGLLGIAFN-VDEDEVGVVLLGEYSHLQAGDEVERTGRVMDVPVG 100 (497)
T ss_pred eEEEEEEEEeceEEEEE---ccCCCC-cCCEEEECCCcEEEEEE-EcCCeEEEEEecCCcCCcCCCEEEECCCCCeEECC
Confidence 35799999999999997 866654 22332222345566664 57778999999999999999999999999999999
Q ss_pred ccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHH
Q 018957 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (348)
Q Consensus 165 ~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~ 244 (348)
++|||||+|++|+|||+++++...++|||++++|++++|.++++||+||||+||+|+|||||||+||||++|+|||+|+.
T Consensus 101 ~~llGRVvd~lG~PiDg~~~~~~~~~~~i~~~~p~~~~R~~v~epl~TGI~aID~l~pigrGQR~~Ifg~~g~GKT~Lal 180 (497)
T TIGR03324 101 DGLLGRVVDPLGRPLDGGGPLASSPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALIPIGRGQRELILGDRQTGKTAIAI 180 (497)
T ss_pred HhhCcCEECCCCCCcCCCCCCCCCceeehhccCcCccccCCCCchhhcCCEEEeccCCcccCCEEEeecCCCCCHHHHHH
Confidence 99999999999999999998877788999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHhhcCC-EEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhh
Q 018957 245 ELINNVAKAHGG-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (348)
Q Consensus 245 ~ii~n~a~~~~~-~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfr 323 (348)
++|.|++ +.| +|||++||||+||+.+|+++|.+.++ ++||++|++|+|+||.+|+++||+|||+|||||
T Consensus 181 ~~I~~q~--~~dv~~V~~~IGeR~rev~e~i~~l~~~~~--------l~~tvvV~atsd~p~~~r~~ap~~a~aiAEyfr 250 (497)
T TIGR03324 181 DTILNQK--GRNVLCIYCAIGQRASAVAKVVANLREHGA--------MDYTIVVVTEGNDPPGLQYIAPYAATSIGEHFM 250 (497)
T ss_pred HHHHHhc--CCCcEEEEEEeccCcHHHHHHHHHhhhcCC--------cceeEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 7777774 335 59999999999999999999998874 479999999999999999999999999999999
Q ss_pred hcCCCcEEEEEechhHHHhhhccc
Q 018957 324 DAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 324 d~~G~dVLli~DslTR~A~A~~e~ 347 (348)
| +|+||||+||||||||+|++||
T Consensus 251 d-~G~~VLlv~DdlTr~A~A~REi 273 (497)
T TIGR03324 251 E-QGRDVLIVYDDLTQHARAYREL 273 (497)
T ss_pred h-CCCCEEEEEcChhHHHHHHHHH
Confidence 9 8999999999999999999987
No 10
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=1.8e-65 Score=514.03 Aligned_cols=248 Identities=19% Similarity=0.289 Sum_probs=221.5
Q ss_pred CceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (348)
Q Consensus 85 ~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG 164 (348)
..+|+|++|.|++++++|+. +.+.+.+++...+.....||+ +++++.+++++|++|+||++|++|.+||++++||||
T Consensus 3 ~~~g~v~~i~G~~v~v~~~~--~~~ge~~~i~~~~~~~~geVi-~~~~~~v~~~~~~~t~Gl~~g~~V~~tg~~~~vpvg 79 (436)
T PRK02118 3 KIYTKITDITGNVITVEAEG--VGYGELATVERKDGSSLAQVI-RLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYS 79 (436)
T ss_pred ceeEEEEEEECcEEEEEeCC--CCCCCEEEEEcCCCCEEEEEE-EEcCCEEEEEEecCCcCCCCCCEEEeCCCceEEEcC
Confidence 35899999999999999742 444433454321234678885 668899999999999999999999999999999999
Q ss_pred ccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHH
Q 018957 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (348)
Q Consensus 165 ~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~ 244 (348)
++|||||+|++|+|||+++++.. ..+|++++||||++|.+++++|+||||+||+|+||+||||+||||++|+|||+|+.
T Consensus 80 ~~lLGRV~d~~G~PiD~~~~~~~-~~~~i~~~~~~p~~R~~~~e~l~TGIkaID~l~pl~rGQkigIF~gaGvgk~~L~~ 158 (436)
T PRK02118 80 ESLLGRRFNGSGKPIDGGPELEG-EPIEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSGEPYNALLA 158 (436)
T ss_pred ccccCCEEccCCcccCCCCCCCc-ceeecCCCCCChHHcCCcccccccCcEEeecccccccCCEEEEEeCCCCCHHHHHH
Confidence 99999999999999999887754 45899999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhh
Q 018957 245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324 (348)
Q Consensus 245 ~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd 324 (348)
+|+++. +.+++||++||||+||+.+||++|++.+++ +||++|++|||+||++|+++||+|+|+||||||
T Consensus 159 ~ia~~~---~~~v~Vfa~iGeR~rE~~ef~~~~~~~~~l--------~rtvlv~~~adep~~~R~~~~~~AltiAEyfrd 227 (436)
T PRK02118 159 RIALQA---EADIIILGGMGLTFDDYLFFKDTFENAGAL--------DRTVMFIHTASDPPVECLLVPDMALAVAEKFAL 227 (436)
T ss_pred HHHHhh---CCCeEEEEEeccchhHHHHHHHHHhhCCCc--------ceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 777642 348999999999999999999999999854 699999999999999999999999999999999
Q ss_pred cCCCcEEEEEechhHHHhhhccc
Q 018957 325 AEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 325 ~~G~dVLli~DslTR~A~A~~e~ 347 (348)
+.|+||||+||||||||||++||
T Consensus 228 ~g~~~VLli~DdlTr~a~A~REI 250 (436)
T PRK02118 228 EGKKKVLVLLTDMTNFADALKEI 250 (436)
T ss_pred cCCCCEEEeccCchHHHHHHHHH
Confidence 43399999999999999999997
No 11
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=2.1e-64 Score=511.48 Aligned_cols=250 Identities=23% Similarity=0.346 Sum_probs=222.7
Q ss_pred CceeeEEEEECCEEEEEeCCCC-hhhhhceEEee--cCceeEEEEeeeccCceEEEEeecCCCCCC-CCCEEEecCCCce
Q 018957 85 GAIGQVCQVIGAVVDVRFDEGL-PPILTALEVVD--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLV-RGQRVLNTGSPIT 160 (348)
Q Consensus 85 ~~~G~V~~V~G~vV~v~f~~gl-p~i~~~lev~~--~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~-~G~~V~~tg~~l~ 160 (348)
..||+|++|.|++++++ |+ +..++++..+. .+.....||+.+. ++.+.+++|+++.||+ .|++|..||++++
T Consensus 2 ~~yg~V~~i~g~~v~v~---g~~~~~~ge~~~i~~~~~~~~~geVi~~~-~~~~~l~~~~~t~gl~i~G~~V~~tg~~~~ 77 (460)
T PRK04196 2 KEYRTVSEIKGPLLFVE---GVEGVAYGEIVEIELPNGEKRRGQVLEVS-EDKAVVQVFEGTTGLDLKDTKVRFTGEPLK 77 (460)
T ss_pred ceeEEEEEEECcEEEEe---ccCCCCCCCEEEEEcCCCCEEEEEEEEEe-CCeEEEEEccCCCCCCCCCCEEEeCCCccE
Confidence 35899999999999997 66 33344544333 2234678888775 4567799999999999 8999999999999
Q ss_pred ecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHH
Q 018957 161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (348)
Q Consensus 161 VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT 240 (348)
||||++|||||+|++|+|||+++++....++|+++.+|+|++|.++++||+||||+||+|+|||||||+||||++|+|||
T Consensus 78 V~vg~~lLGRVvD~~G~PlD~~~~i~~~~~~~i~~~ap~~l~R~~i~epl~TGi~~ID~l~pig~GQR~gIfgg~G~GKs 157 (460)
T PRK04196 78 LPVSEDMLGRIFDGLGRPIDGGPEIIPEKRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHN 157 (460)
T ss_pred EEcCcccccCEECccCCCccCCCCCCCCccCcccCCCCChhhcCCCCccccCCeEEEeccCcccCCCEEEeeCCCCCCcc
Confidence 99999999999999999999999887777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc----CCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHH
Q 018957 241 VLIMELINNVAKAH----GGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316 (348)
Q Consensus 241 ~L~~~ii~n~a~~~----~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~ 316 (348)
+|+.+|+++. .++ +.+|||++||||+||+.+|+++|.+.++ ++||++|++|+|+||.+|+++||+|+
T Consensus 158 ~L~~~ia~~~-~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~--------l~rtvvV~atsd~p~~~R~~a~~~a~ 228 (460)
T PRK04196 158 ELAAQIARQA-KVLGEEENFAVVFAAMGITFEEANFFMEDFEETGA--------LERSVVFLNLADDPAIERILTPRMAL 228 (460)
T ss_pred HHHHHHHHhh-hhccCCCceEEEEEEeccccHHHHHHHHHHHhcCC--------cceEEEEEEcCCCCHHHHHHHHHHHH
Confidence 9999877653 332 2389999999999999999999998874 57999999999999999999999999
Q ss_pred HHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 317 TVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 317 tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|+||||||++|+||||+|||+||||+|++||
T Consensus 229 tiAEyfr~d~G~~VLli~DslTR~A~A~REI 259 (460)
T PRK04196 229 TAAEYLAFEKGMHVLVILTDMTNYCEALREI 259 (460)
T ss_pred HHHHHHHHhcCCcEEEEEcChHHHHHHHHHH
Confidence 9999999438999999999999999999997
No 12
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=100.00 E-value=1.3e-64 Score=512.39 Aligned_cols=246 Identities=22% Similarity=0.333 Sum_probs=222.1
Q ss_pred ceeeEEEEECCEEEEEeCCCChhh-hhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957 86 AIGQVCQVIGAVVDVRFDEGLPPI-LTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~glp~i-~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG 164 (348)
.+|+|++|.|.++.+. |++++ ++++..+. .+...+|+ .++++.+.+++|+++.||+.|++|..||++++||||
T Consensus 6 ~~G~V~~v~~~ii~v~---Gl~~~~~ge~~~i~--~~~~g~vi-~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg 79 (485)
T CHL00059 6 NTGTVLQVGDGIARIY---GLDEVMAGELVEFE--DGTIGIAL-NLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPVS 79 (485)
T ss_pred eeEEEEEEeccEEEEe---ccccCCcCCEEEEC--CCCEEEEE-EEcCCEEEEEEeeCCCCCCCCCEEEECCCcceEEcC
Confidence 4699999999999997 87433 34443332 33445554 568888999999999999999999999999999999
Q ss_pred ccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHH
Q 018957 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (348)
Q Consensus 165 ~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~ 244 (348)
++|||||+|++|+|||+++++....++|++.++|++++|.++++||+||||+||+|+|||||||+||||++|+|||+|++
T Consensus 80 ~~llGRVvd~lG~piDg~~~~~~~~~~~i~~~ap~~~~R~~v~epl~TGI~aID~l~pigrGQR~~I~g~~g~GKt~Lal 159 (485)
T CHL00059 80 EAYLGRVVNALAKPIDGKGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVAT 159 (485)
T ss_pred HhhcCCEECCCCCeeCCCCCcCCCccccccCCCCCchhccCCCcccccCceeeccccccccCCEEEeecCCCCCHHHHHH
Confidence 99999999999999999998877778899999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhh
Q 018957 245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324 (348)
Q Consensus 245 ~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd 324 (348)
++|.|+++ ++.+|||++||||+||+.+|+++|.+.++ ++||++|++|+|+||.+|+++||+|||+||||||
T Consensus 160 ~~I~~q~~-~dv~cV~~~IGer~rev~e~~~~l~~~~~--------l~~tvvV~atad~~~~~r~~ap~~a~aiAEyfr~ 230 (485)
T CHL00059 160 DTILNQKG-QNVICVYVAIGQKASSVAQVVTTLQERGA--------MEYTIVVAETADSPATLQYLAPYTGAALAEYFMY 230 (485)
T ss_pred HHHHhccc-CCeEEEEEEecCCchHHHHHHHHhhcccc--------hhceEEEEeCCCCCHHHHHHHHHHHhhHHHHHHH
Confidence 88888743 34578999999999999999999998874 4799999999999999999999999999999999
Q ss_pred cCCCcEEEEEechhHHHhhhccc
Q 018957 325 AEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 325 ~~G~dVLli~DslTR~A~A~~e~ 347 (348)
+|+||||+||||||||+|++||
T Consensus 231 -~G~~VLlv~DdlTr~A~A~REi 252 (485)
T CHL00059 231 -RGRHTLIIYDDLSKQAQAYRQM 252 (485)
T ss_pred -cCCCEEEEEcChhHHHHHHHHH
Confidence 8999999999999999999986
No 13
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.5e-64 Score=499.16 Aligned_cols=248 Identities=29% Similarity=0.499 Sum_probs=220.0
Q ss_pred CCceeeEEEEECCEEEEEeCCCChhhhhceE-Eeec--CceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCce
Q 018957 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALE-VVDH--SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPIT 160 (348)
Q Consensus 84 ~~~~G~V~~V~G~vV~v~f~~glp~i~~~le-v~~~--~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~ 160 (348)
...+|+|++|.|.++++. |+-...++++ +... .....+||+.+.++ .+.+++|++..|+.+|++|..++++++
T Consensus 22 ~~~~G~v~~v~G~~lea~---g~~~~iGelc~i~~~~~~~~~~aEVvgf~~~-~~~L~p~~~~~gv~~g~~V~~~~~~~~ 97 (441)
T COG1157 22 YKRRGRLTRVTGLLLEAV---GPQARIGELCKIERSRGSEKVLAEVVGFNEE-RVLLMPFEPVEGVSPGAEVVPTGRPLS 97 (441)
T ss_pred ceEEEEEEEEeeeEEEEe---cCCCcccceEEEEecCCCCceeEEEEEEcCC-eEEEeccCccccCCCCCEEEecCCccc
Confidence 445799999999999986 6544455544 4332 22238999998554 566999999999999999999999999
Q ss_pred ecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHH
Q 018957 161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (348)
Q Consensus 161 VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT 240 (348)
+|+|++|||||+|++|+|||+++.+....+.|+..+||||+.|..++++|.||||+||+|+|||+|||+|||+++|||||
T Consensus 98 v~~g~~lLGRVld~~G~plDg~~~~~~~~~~~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT~G~GQRiGIFAgsGVGKS 177 (441)
T COG1157 98 VPVGDALLGRVLDGLGRPLDGGGLPDGTERRPLDAPPPNPLKRRPIEEPLDTGVRAIDGLLTCGKGQRIGIFAGSGVGKS 177 (441)
T ss_pred cccChhhhhhhhccCCCcCcCCCCCCCcccccccCCCCCchhcccccccccccceeeecccccccCceeEEEecCCCcHH
Confidence 99999999999999999999988888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHH
Q 018957 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320 (348)
Q Consensus 241 ~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAE 320 (348)
||+.||++|. ..|++|+++||||+|||.||+ |.. ++ ++.++|||+|++|+|+||.+|..++++|++|||
T Consensus 178 tLLgMiar~t---~aDv~ViaLIGERGREVrEFI----E~~---Lg-~egl~rsViVvATSD~s~l~R~~aa~~At~IAE 246 (441)
T COG1157 178 TLLGMIARNT---EADVNVIALIGERGREVREFI----EKD---LG-EEGLKRSVVVVATSDESALMRLKAAFTATTIAE 246 (441)
T ss_pred HHHHHHhccc---cCCEEEEEEeeccchhHHHHH----HHh---cc-hhhccceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 9999998864 359999999999999996655 443 22 235789999999999999999999999999999
Q ss_pred HhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 321 HFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 321 yfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|||| |||||||+|||+||||+|++||
T Consensus 247 yFRD-qG~~VLL~mDSlTRfA~AqREI 272 (441)
T COG1157 247 YFRD-QGKRVLLIMDSLTRFAMAQREI 272 (441)
T ss_pred HHHh-CCCeEEEEeecHHHHHHHHHHH
Confidence 9999 8999999999999999999997
No 14
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=3.1e-64 Score=509.44 Aligned_cols=249 Identities=22% Similarity=0.339 Sum_probs=221.7
Q ss_pred ceeeEEEEECCEEEEEeCCCC-hhhhhceEEee--cCceeEEEEeeeccCceEEEEeecCCCCCCCCCE-EEecCCCcee
Q 018957 86 AIGQVCQVIGAVVDVRFDEGL-PPILTALEVVD--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQR-VLNTGSPITV 161 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~gl-p~i~~~lev~~--~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~-V~~tg~~l~V 161 (348)
.|++|++|.|++++++ |+ ...++++..+. .+.....||+.+. ++.+.+++|+++.||++|+. |.+||++++|
T Consensus 1 ~y~~v~~i~g~iv~v~---g~~~~~~ge~~~i~~~~~~~~~geVv~~~-~~~~~l~~~~~t~gi~~g~~~V~~tg~~~~v 76 (458)
T TIGR01041 1 EYSTITEIAGPLVFVE---GVEPVAYNEIVEIETPDGEKRRGQVLDSS-EGLAVVQVFEGTTGLDPTGTKVRFTGETLKL 76 (458)
T ss_pred CccEEEEEEccEEEEE---ccCCCCcCCEEEEEcCCCcEEEEEEEEEE-CCEEEEEEecCCcCcCCCCcEEEECCCceEE
Confidence 4799999999999997 66 33445544432 2233678888774 56688999999999999986 9999999999
Q ss_pred cCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHH
Q 018957 162 PVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV 241 (348)
Q Consensus 162 pVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~ 241 (348)
|||++|||||+|++|+|||+++++..+.+||+++.+|+|++|.++++||+||||+||+|+||+||||+||||++|+|||+
T Consensus 77 ~vg~~lLGRViD~~G~plD~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~TGi~~ID~l~pig~GQR~gIfgg~G~GKs~ 156 (458)
T TIGR01041 77 PVSEDMLGRILNGSGEPIDGGPEIVPDERRDINGAPINPYAREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNE 156 (458)
T ss_pred EcChhhccCEEccCCcccCCCCCCCccceeeccCCCCChhhcCCCCCcCCCCeEEEEccCccccCCEEEeeCCCCCCHHH
Confidence 99999999999999999999988877778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc----CCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHH
Q 018957 242 LIMELINNVAKAH----GGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317 (348)
Q Consensus 242 L~~~ii~n~a~~~----~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~t 317 (348)
|+.+|+++. .++ +.+|||++||||+||+.+|+++|.+.+. ++||++|++|||+||.+|+++||+|+|
T Consensus 157 L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~--------l~rtvvv~atsd~p~~~R~~a~~~a~t 227 (458)
T TIGR01041 157 LAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGA--------LERAVVFLNLADDPAVERIVTPRMALT 227 (458)
T ss_pred HHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCC--------cceEEEEEECCCCCHHHHHHHHHHHHH
Confidence 999977653 321 2389999999999999999999988874 579999999999999999999999999
Q ss_pred HHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 318 VAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 318 iAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
+||||||++|+||||+|||+||||+|++||
T Consensus 228 iAEyfr~d~G~~VLli~DslTR~A~A~REI 257 (458)
T TIGR01041 228 AAEYLAFEKDMHVLVILTDMTNYCEALREI 257 (458)
T ss_pred HHHHHHHccCCcEEEEEcChhHHHHHHHHH
Confidence 999999448999999999999999999997
No 15
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=100.00 E-value=2e-64 Score=514.17 Aligned_cols=246 Identities=30% Similarity=0.480 Sum_probs=222.2
Q ss_pred ceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCc
Q 018957 86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR 165 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~ 165 (348)
.+|+|++|.|+++++. |+|++. ..|+.....+. .+.+.+++++.+.+++|+++.||+.|+.|..||++++||||+
T Consensus 27 ~~G~V~~v~g~i~~v~---gl~~~~-~ge~~~i~~~~-~g~V~~l~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~ 101 (502)
T PRK13343 27 EIGRVESVGDGIAFVS---GLPDAA-LDELLRFEGGS-RGFAFNLEEELVGAVLLDDTADILAGTEVRRTGRVLEVPVGD 101 (502)
T ss_pred EeeEEEEEeCCEEEEe---CCCCCC-CCCEEEECCCc-EEEEEEecCCeEEEEEeeCCCCCCCCCEeEecCCcceeecCH
Confidence 5799999999999996 877554 22222222334 445556788899999999999999999999999999999999
Q ss_pred cccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHHH
Q 018957 166 VTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245 (348)
Q Consensus 166 ~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~ 245 (348)
+|||||+|++|+|||+++++....++|++..+|++++|.++++||+||||+||+|+|||||||++|||++|+|||+|+++
T Consensus 102 ~llGRVid~lG~piDg~~~i~~~~~~~i~~~ap~~~~R~~v~epl~TGIkaID~l~pigrGQR~~I~g~~g~GKt~Lal~ 181 (502)
T PRK13343 102 GLLGRVIDPLGRPLDGGGPLQATARRPLERPAPAIIERDFVTEPLQTGIKVVDALIPIGRGQRELIIGDRQTGKTAIAID 181 (502)
T ss_pred HhcCCEECCCCCcccCCCCCCCCceecccCCCcChhhcCCCCcccccCCceeccccccccCCEEEeeCCCCCCccHHHHH
Confidence 99999999999999999998888889999999999999999999999999999999999999999999999999999878
Q ss_pred HHHHHHhhcCC-EEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhh
Q 018957 246 LINNVAKAHGG-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324 (348)
Q Consensus 246 ii~n~a~~~~~-~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd 324 (348)
+|.|++ +.| +|||++||||+||+.+|++++.+.+. ++||++|++|+|+||.+|+++||+|||+||||||
T Consensus 182 ~i~~~~--~~dv~~V~~~IGer~rev~e~~~~l~~~~~--------l~~tvvV~atsd~~~~~r~~ap~~a~aiAEyfrd 251 (502)
T PRK13343 182 AIINQK--DSDVICVYVAIGQKASAVARVIETLREHGA--------LEYTTVVVAEASDPPGLQYLAPFAGCAIAEYFRD 251 (502)
T ss_pred HHHhhc--CCCEEEEEEEeccChHHHHHHHHHHHhcCc--------cceeEEEEecccccHHHHHHHHHHHHHHHHHHHh
Confidence 887774 335 57999999999999999999998874 4799999999999999999999999999999999
Q ss_pred cCCCcEEEEEechhHHHhhhccc
Q 018957 325 AEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 325 ~~G~dVLli~DslTR~A~A~~e~ 347 (348)
+|+||||+||||||||+|++||
T Consensus 252 -~G~~VLlv~DdlTr~A~A~REi 273 (502)
T PRK13343 252 -QGQDALIVYDDLSKHAAAYREL 273 (502)
T ss_pred -CCCCEEEEecchHHHHHHHHHH
Confidence 8999999999999999999986
No 16
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=2.6e-64 Score=514.79 Aligned_cols=246 Identities=25% Similarity=0.419 Sum_probs=221.6
Q ss_pred ceeeEEEEECCEEEEEeCCCChhh-hhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957 86 AIGQVCQVIGAVVDVRFDEGLPPI-LTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~glp~i-~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG 164 (348)
.+|+|++|.|+++.++ |++.+ ++++..+. .+...+|+ .++++.+.+++|+++.||+.|+.|.+||++++||||
T Consensus 27 ~~G~V~~v~g~~v~v~---g~~~~~~ge~~~i~--~~~~g~Vi-~~~~~~~~~~~~~~~~gi~~g~~V~~~~~~~~v~vg 100 (502)
T PRK09281 27 EVGTVISVGDGIARVY---GLDNVMAGELLEFP--GGVYGIAL-NLEEDNVGAVILGDYEDIKEGDTVKRTGRILEVPVG 100 (502)
T ss_pred EEEEEEEEeCCEEEEE---CccccccCCEEEEC--CCcEEEEE-EEcCCeEEEEEecCcccccCCCeeeecCCceEEecC
Confidence 4799999999999986 77443 33433332 33445555 557888999999999999999999999999999999
Q ss_pred ccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHH
Q 018957 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (348)
Q Consensus 165 ~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~ 244 (348)
++|||||+|++|+|||+++++....++|++++||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|++
T Consensus 101 ~~llGrv~d~~G~pid~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGi~~ID~l~pigrGQr~~Ifg~~g~GKt~lal 180 (502)
T PRK09281 101 EALLGRVVNPLGQPIDGKGPIEATETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAI 180 (502)
T ss_pred HHhcCCEEccCCCCcCCCCCCCCCceecccCCCcCccccCCccceeecCCeeeecccccccCcEEEeecCCCCCchHHHH
Confidence 99999999999999999998877888999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhh
Q 018957 245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324 (348)
Q Consensus 245 ~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd 324 (348)
++|.|++. ++.+|||++||||+||+.+|+++|.+.++ ++||++|++|+|+||.+|+++||+|||+||||||
T Consensus 181 ~~i~~~~~-~dv~~V~~~IGer~~ev~e~~~~~~~~~~--------l~~tvvv~atsd~p~~~r~~a~~~a~tiAEyfrd 251 (502)
T PRK09281 181 DTIINQKG-KDVICIYVAIGQKASTVAQVVRKLEEHGA--------MEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMD 251 (502)
T ss_pred HHHHHhcC-CCeEEEEEEecCChHHHHHHHHHHhhcCC--------ccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888753 33457999999999999999999998874 4799999999999999999999999999999999
Q ss_pred cCCCcEEEEEechhHHHhhhccc
Q 018957 325 AEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 325 ~~G~dVLli~DslTR~A~A~~e~ 347 (348)
+|+||||+||||||||+|++||
T Consensus 252 -~G~~VLli~DdlTr~A~A~REi 273 (502)
T PRK09281 252 -NGKDALIVYDDLSKQAVAYRQL 273 (502)
T ss_pred -cCCCEEEEecCchHHHHHHHHH
Confidence 7999999999999999999986
No 17
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=100.00 E-value=5.1e-64 Score=512.52 Aligned_cols=246 Identities=26% Similarity=0.437 Sum_probs=220.5
Q ss_pred ceeeEEEEECCEEEEEeCCCChh-hhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957 86 AIGQVCQVIGAVVDVRFDEGLPP-ILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~glp~-i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG 164 (348)
.+|+|++|.|+++.++ |++. .++++..+. .+...||+ .++++.+.+++|+++.||+.|+.|..||++++||||
T Consensus 26 ~~G~V~~v~g~ii~v~---g~~~~~~ge~~~i~--~~~~g~Vi-~~~~~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~vg 99 (501)
T TIGR00962 26 EVGTVVSVGDGIARVY---GLENVMSGELIEFE--GGVQGIAL-NLEEDSVGAVIMGDYSNIREGSTVKRTGRILKVPVG 99 (501)
T ss_pred EEEEEEEEeCCEEEEE---CCcCCCCCCEEEEC--CCeEEEEE-EecCCeEEEEEecCCcCCCCCCeeEecCCccEEecC
Confidence 4799999999999997 7733 334433332 33444554 568888999999999999999999999999999999
Q ss_pred ccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHH
Q 018957 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (348)
Q Consensus 165 ~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~ 244 (348)
++|||||+|++|+|||+++++....++|++..+|++++|.++++||+||||+||+|+|||||||+||||++|+|||+|++
T Consensus 100 ~~llGRV~d~~G~pld~~~~~~~~~~~~i~~~~p~~~~R~~i~~pl~TGi~aID~l~pigrGQr~~I~g~~g~GKt~Lal 179 (501)
T TIGR00962 100 DGLLGRVVNALGQPIDGKGPIDSDEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAVAI 179 (501)
T ss_pred hHhcCCEeCCCCCeeCCCCCcCCCCceeeecCCCChhhcCCcCceeccCCceeeccCCcccCCEEEeecCCCCCccHHHH
Confidence 99999999999999999988877778899999999999999999999999999999999999999999999999999977
Q ss_pred HHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhh
Q 018957 245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324 (348)
Q Consensus 245 ~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd 324 (348)
++|.|++. ++.+|||++||||+||+.+|+++|.+.++ ++||++|++|+|+||.+|+++||+|||+||||||
T Consensus 180 ~~i~~~~~-~dv~~V~~~IGer~rev~e~~~~~~~~~~--------l~~tvvV~atsd~p~~~r~~a~~~a~aiAEyfrd 250 (501)
T TIGR00962 180 DTIINQKD-SDVYCVYVAIGQKASTVAQVVRKLEEHGA--------MDYTIVVAATASDSASLQYLAPYTGCTMAEYFRD 250 (501)
T ss_pred HHHHhhcC-CCeEEEEEEccCChHHHHHHHHHHHhcCc--------cceeEEEEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77877743 33347999999999999999999998874 4799999999999999999999999999999999
Q ss_pred cCCCcEEEEEechhHHHhhhccc
Q 018957 325 AEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 325 ~~G~dVLli~DslTR~A~A~~e~ 347 (348)
+|+||||+|||+||||+|++||
T Consensus 251 -~G~~VLlv~Ddltr~A~A~REi 272 (501)
T TIGR00962 251 -NGKHALIIYDDLSKHAVAYRQI 272 (501)
T ss_pred -cCCCEEEEecchHHHHHHHHHH
Confidence 7999999999999999999986
No 18
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=1.9e-62 Score=504.15 Aligned_cols=249 Identities=28% Similarity=0.428 Sum_probs=216.5
Q ss_pred eeEEEEECCEEEEEeCCCCh-hhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCcc
Q 018957 88 GQVCQVIGAVVDVRFDEGLP-PILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRV 166 (348)
Q Consensus 88 G~V~~V~G~vV~v~f~~glp-~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~~ 166 (348)
|+|.+|.|++|.++ |++ ..++++..++ +.++..||+.+.++ .+.+++|++|.||++|++|..||++++|++|++
T Consensus 2 G~I~~V~Gpvv~a~---g~~~~~~gE~v~v~-~~~l~gEVi~~~~d-~a~iqvye~t~Gl~~G~~V~~tg~plsV~lGpg 76 (578)
T TIGR01043 2 GRIIRVSGPLVVAD---GMKGAQMYEVVKVG-EEGLIGEIIRIEGD-KAFIQVYEETSGIKPGEPVVGTGAPLSVELGPG 76 (578)
T ss_pred CEEEEEECCEEEEe---cCCCCCcCCEEEEC-CCcEEEEEEEEcCC-eEEEEECCCCCCCCCCCEEEECCCccEEEcCHH
Confidence 89999999999997 654 3333433333 34688999988555 566999999999999999999999999999999
Q ss_pred ccccEEeeeCcccccCCC----C----------ccc--------------------------------------------
Q 018957 167 TLGRIMNVIGEPIDEKGD----L----------KTE-------------------------------------------- 188 (348)
Q Consensus 167 lLGRViD~lG~PiD~~g~----i----------~~~-------------------------------------------- 188 (348)
|||||+|++|+|||+.++ + ..+
T Consensus 77 lLGrV~DgigrPLd~~~~~~g~~i~rg~~~~~l~~~~~w~f~p~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v 156 (578)
T TIGR01043 77 LLGSIYDGVQRPLDVLKEKTGDFIARGVDAPGLDRDKKWHFKPTVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEI 156 (578)
T ss_pred HhcceeccCCccccCcccccccccccCccCCCcCcccccccccccccCccccCCceEEEEecccceeeeeecCCCCcceE
Confidence 999999999999998631 1 111
Q ss_pred -----------------------------ccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcH
Q 018957 189 -----------------------------HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239 (348)
Q Consensus 189 -----------------------------~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGK 239 (348)
+.||++. ||++.+|.++++||+||||+||+|+||+||||++|||++|+||
T Consensus 157 ~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~wPvr~-p~p~~~R~~~~~pL~TGiRvID~l~Pi~kGqr~~I~gg~G~GK 235 (578)
T TIGR01043 157 VEIAEEGDYTVEDTIAVVDTDGDEEIKMYQKWPVRI-PRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGK 235 (578)
T ss_pred EEeccCCCceeeeeEEEEecCCceeeeeeeeccccc-CCCchhcCCCCcchhccchhhhccccccCCCEEEEecCCCCCH
Confidence 2679987 7779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHH
Q 018957 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA 319 (348)
Q Consensus 240 T~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiA 319 (348)
|+|+++++++. +.|++||++||||++|+.+++++|.+....+++ ++.|+||++|+||||+|+.+|++++|+|+|+|
T Consensus 236 T~l~~~lak~~---~adivVyvg~GERG~E~~e~le~f~~l~dp~~g-~~~m~RTvlVanTSn~p~~aR~~s~ytg~TiA 311 (578)
T TIGR01043 236 TVTQHQLAKWS---DADIVVYIGCGERGNEMTDVLEEFPELKDPKTG-KPLMERTVLIANTSNMPVAAREASIYTGITIA 311 (578)
T ss_pred HHHHHHHHhcC---CCCEEEEEEeccChHHHHHHHHHhHhhcccccc-cccccceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 99999888752 569999999999999999999999875422222 34789999999999999999999999999999
Q ss_pred HHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 320 EHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 320 Eyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
||||| +|+||||++||+||||+|++||
T Consensus 312 EYfRD-~G~~Vllm~DS~sR~AeAlREI 338 (578)
T TIGR01043 312 EYFRD-MGYDVALMADSTSRWAEAMREI 338 (578)
T ss_pred HHHHH-CCCCEEEEecChhHHHHHHHHH
Confidence 99999 7999999999999999999997
No 19
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=4.8e-62 Score=501.81 Aligned_cols=252 Identities=29% Similarity=0.425 Sum_probs=219.7
Q ss_pred ceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCc
Q 018957 86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR 165 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~ 165 (348)
..|+|.+|.|++|++++..+ +.++..+++ + +.++..||+++.++. +.+++|++|.||++|++|.+||++++|++|+
T Consensus 3 ~~G~I~~V~Gpvv~~~~~~~-~~~~E~v~v-~-~~~l~gEVi~~~~d~-a~iqv~e~T~Gl~~G~~V~~tg~plsv~lGp 78 (586)
T PRK04192 3 TKGKIVRVSGPLVVAEGMGG-ARMYEVVRV-G-EEGLIGEIIRIEGDK-ATIQVYEETSGIKPGEPVEFTGEPLSVELGP 78 (586)
T ss_pred ceeEEEEEECcEEEEEeCCC-CCccCEEEE-C-CCcEEEEEEEEeCCc-eEEEEecCCcCCCCCCEEEeCCCccEEEcCH
Confidence 57999999999999984332 333332333 3 346899999986665 5799999999999999999999999999999
Q ss_pred cccccEEeeeCcccccCCC----C----------cc--------------------------------------------
Q 018957 166 VTLGRIMNVIGEPIDEKGD----L----------KT-------------------------------------------- 187 (348)
Q Consensus 166 ~lLGRViD~lG~PiD~~g~----i----------~~-------------------------------------------- 187 (348)
+|||||+|++|+|||+.+. + ..
T Consensus 79 glLGrv~Dg~grPLd~~~~~~~~~i~rG~~~~~l~~~~~w~f~p~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~ 158 (586)
T PRK04192 79 GLLGSIFDGIQRPLDELAEKSGDFLERGVYVPALDREKKWEFTPTVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGT 158 (586)
T ss_pred HhcCCeecCCCCcccccchhcccccccCCCCCCCCcccccceecccccCCEecCCceEEEEecCCceeeeeecCCCCceE
Confidence 9999999999999997641 1 10
Q ss_pred -------------------------------cccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCC
Q 018957 188 -------------------------------EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG 236 (348)
Q Consensus 188 -------------------------------~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~G 236 (348)
.++||++.++|. .+|..+++||.||||+||+|+||+||||++|||++|
T Consensus 159 ~~~i~~~G~ytv~~~i~~~~~~~G~~~~~~~~~~wPvr~~~p~-~~R~~~~~pL~TGirvID~l~Pi~kGq~~~Ipg~~G 237 (586)
T PRK04192 159 VKEIVSEGDYTVDDTIAVLEDEDGEGVELTMMQKWPVRRPRPY-KEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFG 237 (586)
T ss_pred EEEEccCCCceeeeEEEEEEccCCceeeeccccccccccCCcc-cccCCCCCccccCchhhhcccccccCCeEEEecCCC
Confidence 145899999887 999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHH
Q 018957 237 VGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316 (348)
Q Consensus 237 vGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~ 316 (348)
+|||+|+++++++. +.|++||++||||+||++|++++|.+.....++ +..++||++|+||||+|+.+|++++|+|+
T Consensus 238 ~GKTvl~~~iak~a---~adivVyvg~GERg~E~~e~l~ef~~l~dp~~g-~~~m~RTvlVanTSn~Pv~aR~~s~ytgi 313 (586)
T PRK04192 238 SGKTVTQHQLAKWA---DADIVIYVGCGERGNEMTEVLEEFPELIDPKTG-RPLMERTVLIANTSNMPVAAREASIYTGI 313 (586)
T ss_pred CCHHHHHHHHHhcC---CCCEEEEEEcCcChHHHHHHHHHHHhhcccccc-cccceeEEEEEECCCCCHHHHHHHHHHHH
Confidence 99999999988763 569999999999999999999999975322222 34688999999999999999999999999
Q ss_pred HHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 317 TVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 317 tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|+|||||| +|+||||++||+||||+|++||
T Consensus 314 TiAEYfRd-~G~~Vllm~DStSR~AeAlREI 343 (586)
T PRK04192 314 TIAEYYRD-MGYDVLLMADSTSRWAEALREI 343 (586)
T ss_pred HHHHHHHH-CCCCEEEEecChHHHHHHHHHH
Confidence 99999999 7999999999999999999997
No 20
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=1.1e-61 Score=488.28 Aligned_cols=249 Identities=21% Similarity=0.291 Sum_probs=216.3
Q ss_pred ceeeEEEEECCEEEEEeCCCC-hhhhhceEEe--ecCceeEEEEeeeccCceEEEEeecCCCCCCC-CCEEEecCCCcee
Q 018957 86 AIGQVCQVIGAVVDVRFDEGL-PPILTALEVV--DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVR-GQRVLNTGSPITV 161 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~gl-p~i~~~lev~--~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~-G~~V~~tg~~l~V 161 (348)
.|++|++|.|+++.+. |+ ...+++++.+ ..+.....||+.+ .++.+.+++|++++||+. |+.|..|+++++|
T Consensus 1 ~y~~v~~i~G~~i~~~---g~~~~~~Ge~~~i~~~~~~~~~geVi~~-~~~~~~l~~~~~~~gi~~~g~~V~~t~~~~~v 76 (466)
T TIGR01040 1 EYRTVSGVNGPLVILD---NVKFPRFAEIVNLTLPDGTVRSGQVLEV-SGNKAVVQVFEGTSGIDAKKTTCEFTGDILRT 76 (466)
T ss_pred CCccceEEEccEEEEE---CCCCCCcCCEEEEEeCCCCEEEEEEEEE-eCCeEEEEEcCCCCCcccCCCEEEECCCccEE
Confidence 3789999999999987 66 3334454443 2222356788877 555677999999999996 9999999999999
Q ss_pred cCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHH
Q 018957 162 PVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV 241 (348)
Q Consensus 162 pVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~ 241 (348)
|||++|||||+|++|+|||+++++....++||++++|||++|.++++||+||||+||+|+|||||||+||||++|+|||+
T Consensus 77 ~vg~~lLGRVid~~G~piD~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~TGI~aID~l~~ig~GQRigIfagsGvGKs~ 156 (466)
T TIGR01040 77 PVSEDMLGRVFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNE 156 (466)
T ss_pred EcCcccccCEECccccccCCCCCCCCCceeeccCCCCChhHcCCCCCeeecCcEEEeccCccccCCeeeeecCCCCCHHH
Confidence 99999999999999999999988877778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----h-------cCCEEEEEEeeccchhHHH-HHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHH
Q 018957 242 LIMELINNVAK-----A-------HGGFSVFAGVGERTREGND-LYREMIESGVIKLGDKQADSKCALVYGQMNEPPGAR 308 (348)
Q Consensus 242 L~~~ii~n~a~-----~-------~~~~~V~~~IGER~rEv~~-~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r 308 (348)
|+.+|++|... + ++.+|||++|||| ||+.+ ++++|.+.|+ ++||++|++|||+||.+|
T Consensus 157 L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGer-re~~efi~~~l~~~g~--------l~rtvvv~atsd~p~~~R 227 (466)
T TIGR01040 157 IAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVN-METARFFKQDFEENGS--------MERVCLFLNLANDPTIER 227 (466)
T ss_pred HHHHHHHhhccccccccccccccCCceEEEEEEeeee-hHHHHHHHHHHHhcCC--------cceEEEEEECCCCCHHHH
Confidence 99998776421 1 1128999999999 66655 5677887774 469999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 309 ARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 309 ~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
+++||+|+|+||||||++|+||||++|||||||+|++||
T Consensus 228 ~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~A~A~REi 266 (466)
T TIGR01040 228 IITPRLALTTAEYLAYQCEKHVLVILTDMSSYADALREV 266 (466)
T ss_pred HHHHhhhHHHHHHHHHhcCCcEEEeccChHHHHHHHHHH
Confidence 999999999999999558999999999999999999997
No 21
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=7.6e-62 Score=498.30 Aligned_cols=252 Identities=28% Similarity=0.398 Sum_probs=218.3
Q ss_pred ceeeEEEEECCEEEEEeCCCChhh-hhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957 86 AIGQVCQVIGAVVDVRFDEGLPPI-LTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~glp~i-~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG 164 (348)
++|+|.+|.|++|.++ |++.+ ++++..++ +.+++.||+.+. ++.+.+++|++|.||++|++|..||++++|++|
T Consensus 1 ~~G~V~~v~G~vV~a~---g~~~~~~gE~v~v~-~~~l~gEVI~l~-~d~a~iq~ye~t~Gl~~G~~V~~tg~~lsv~lG 75 (591)
T TIGR01042 1 EYGYIYKVSGPVVVAE---NMAGAAMYELVRVG-HDELVGEIIRLE-GDKATIQVYEETSGLTVGDPVLRTGKPLSVELG 75 (591)
T ss_pred CceEEEEEECCEEEEe---cCCCCCcCCEEEEC-CCceEEEEEEEc-CCeEEEEEccCccCCCCCCEEEeCCCccEEEcC
Confidence 3699999999999997 76322 23333333 346889999874 556779999999999999999999999999999
Q ss_pred ccccccEEeeeCcccccCC----C-----------Ccc------------------------------------------
Q 018957 165 RVTLGRIMNVIGEPIDEKG----D-----------LKT------------------------------------------ 187 (348)
Q Consensus 165 ~~lLGRViD~lG~PiD~~g----~-----------i~~------------------------------------------ 187 (348)
++|||||+|++|+|||+.+ . +..
T Consensus 76 pglLG~V~DgigrPLd~~~~~~~~~fi~rG~~~~~ld~~~~w~f~p~~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~ 155 (591)
T TIGR01042 76 PGILGNIFDGIQRPLKAIAEQSQSIYIPRGVNVPALDRDKKWEFTPKKLRVGDHITGGDIYGTVFENSLIKHKIMLPPRA 155 (591)
T ss_pred HHHhhcccCcCCCchHHHHhhccCccccCCCCCCCCCccccceeeccccccCCCccCCCeEEEEecCCceeeeeecCCCC
Confidence 9999999999999999753 1 110
Q ss_pred ---------------------------------cccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecC
Q 018957 188 ---------------------------------EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGG 234 (348)
Q Consensus 188 ---------------------------------~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~ 234 (348)
.+.||++. ||++.+|.++++||.||+|+||+|+||+||||++|||+
T Consensus 156 ~g~v~~i~~~g~ytv~~~i~~~~~~g~~~~~~m~~~wPvr~-p~p~~~R~~~~~PL~TG~RvID~lfPi~kGqr~~I~gg 234 (591)
T TIGR01042 156 RGTITYIAPAGNYTVDDTVLEVEFQGVKKKFSMLQTWPVRS-PRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGA 234 (591)
T ss_pred ceEEEEEccCCCceeeeEEEEEeeCCceeeeccceeeeccc-CCChhhccCCCCccccchhhhhhccchhcCCeEEEEcC
Confidence 02689998 78899999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccC-cccCCCeeEEEEecCCCCHHHHHHHHH
Q 018957 235 AGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLG-DKQADSKCALVYGQMNEPPGARARVGL 313 (348)
Q Consensus 235 ~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~-~~~~~~rtvvV~~tsdep~~~r~~a~~ 313 (348)
+|||||+|+++++++ .+.|++||++||||+||++|++++|.+......+ .+..|+||++|+||||+|+.+|++++|
T Consensus 235 ~G~GKT~l~~~lak~---s~aDviVyvg~GERG~Em~evle~fp~l~dp~~g~~~~~m~rtvlVa~tsd~p~~~R~~s~y 311 (591)
T TIGR01042 235 FGCGKTVISQSLSKY---SNSDAIVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREASIY 311 (591)
T ss_pred CCcCHHHHHHHHHhc---cCcCEEEEEEEeechHHHHHHHHHhHhhcccccccccccccceEEEEEcCCCCHHHHHHHHH
Confidence 999999999998764 2569999999999999999999999876432222 134689999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 314 TGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 314 ~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
+|+|+|||||| +|+||||++||+||||+|++||
T Consensus 312 tg~tiAEYfRD-~G~~Vll~~DS~tR~AeAlREI 344 (591)
T TIGR01042 312 TGITLAEYFRD-MGYNVSMMADSTSRWAEALREI 344 (591)
T ss_pred HHHHHHHHHHh-cCCCEEEEecChHHHHHHHHHH
Confidence 99999999999 7999999999999999999997
No 22
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=4.9e-61 Score=483.40 Aligned_cols=251 Identities=28% Similarity=0.428 Sum_probs=220.6
Q ss_pred CCceeeEEEEECCEEEEEeCCCChhhhhceEEeecCc-eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceec
Q 018957 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP 162 (348)
Q Consensus 84 ~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~-~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~Vp 162 (348)
...+|+|++|.|+++++++++....+.+.+++...+. ...+||+++.++ .+.+++|+++.||+.|+.|..||++++||
T Consensus 15 ~~~~g~v~~i~g~~i~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~-~~~l~~~~~~~gi~~g~~V~~tg~~~~v~ 93 (442)
T PRK08927 15 LVIYGRVVAVRGLLVEVAGPIHALSVGARIVVETRGGRPVPCEVVGFRGD-RALLMPFGPLEGVRRGCRAVIANAAAAVR 93 (442)
T ss_pred ceeeeEEEEEEccEEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEcCC-eEEEEEccCccCCCCCCEEEeCCCccEEE
Confidence 3457999999999999986542344443345523122 478899999777 57899999999999999999999999999
Q ss_pred CCccccccEEeeeCcccccCCCCccc-ccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHH
Q 018957 163 VGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV 241 (348)
Q Consensus 163 VG~~lLGRViD~lG~PiD~~g~i~~~-~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~ 241 (348)
||++|||||+|++|+|||+++++... .++||++.||||++|.+++++|+||||+||+|+|+++|||++|||++|+|||+
T Consensus 94 vg~~llGRVid~~G~piDg~~~~~~~~~~~~i~~~~p~~~~R~~~~~~l~TGir~ID~l~~i~~Gqri~I~G~sG~GKTt 173 (442)
T PRK08927 94 PSRAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGIFAGSGVGKSV 173 (442)
T ss_pred CChhhCCCEEccCCCCccCCCCCCCCcccccccCCCcChHHcCCcccccccceEEEeeeeEEcCCCEEEEECCCCCCHHH
Confidence 99999999999999999999887654 57899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHH
Q 018957 242 LIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH 321 (348)
Q Consensus 242 L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEy 321 (348)
|+++++++. +.+++||++||||+||+.+|+++..... .++||++|++|||+||.+|++++|+|+|+|||
T Consensus 174 LL~~I~~~~---~~d~~v~~~iGER~rEv~ef~~~~l~~~--------~l~rsvvv~atsd~~~~~r~~a~~~a~tiAEy 242 (442)
T PRK08927 174 LLSMLARNA---DADVSVIGLIGERGREVQEFLQDDLGPE--------GLARSVVVVATSDEPALMRRQAAYLTLAIAEY 242 (442)
T ss_pred HHHHHHhcc---CCCEEEEEEEecCcHHHHHHHHHHhhcc--------CceeEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 998766542 4578899999999999999887543322 35799999999999999999999999999999
Q ss_pred hhhcCCCcEEEEEechhHHHhhhccc
Q 018957 322 FRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 322 frd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
||| +||||||++|||||||+|++||
T Consensus 243 frd-~G~~Vll~~DslTr~A~A~REi 267 (442)
T PRK08927 243 FRD-QGKDVLCLMDSVTRFAMAQREI 267 (442)
T ss_pred HHH-CCCcEEEEEeCcHHHHhhhhHH
Confidence 999 7999999999999999999996
No 23
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=3.4e-61 Score=483.62 Aligned_cols=247 Identities=26% Similarity=0.457 Sum_probs=223.3
Q ss_pred CceeeEEEEECCEEEEEeCCCChhhhhceEEeec-CceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecC
Q 018957 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH-SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (348)
Q Consensus 85 ~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~-~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpV 163 (348)
..+|+|++|.|.++++. |+....++++.++. +..+.+||+++.++ .+.+++|++++||+.|++|..||++++|||
T Consensus 24 ~~~G~v~~v~g~~i~~~---g~~~~ige~~~i~~~~~~~~~EVv~~~~~-~~~l~~~~~~~gi~~g~~V~~tg~~~~v~v 99 (444)
T PRK08972 24 VASGKLVRVVGLTLEAT---GCRAPVGSLCSIETMAGELEAEVVGFDGD-LLYLMPIEELRGVLPGARVTPLGEQSGLPV 99 (444)
T ss_pred ceeeEEEEEEcCEEEEe---eCCCCCCCEEEEecCCCcEEEEEEEecCC-EEEEEECCCcCCCCCCCEEEECCCccEEEc
Confidence 34699999999999997 55555556555532 34588999998655 688999999999999999999999999999
Q ss_pred CccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHH
Q 018957 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (348)
Q Consensus 164 G~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~ 243 (348)
|++|||||+|++|+|||+++++....+||+++++|+|++|.++++||+|||++||.++|+++|||++|||++|+|||||+
T Consensus 100 g~~llGRVid~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGi~aID~ll~i~~GqrigI~G~sG~GKSTLL 179 (444)
T PRK08972 100 GMSLLGRVIDGVGNPLDGLGPIYTDQRASRHSPPINPLSRRPITEPLDVGVRAINAMLTVGKGQRMGLFAGSGVGKSVLL 179 (444)
T ss_pred ChhhcCCeECCCCCCcCCCCCCCCCccccccCCCCChhhcCCCCCcccccceeecceEEEcCCCEEEEECCCCCChhHHH
Confidence 99999999999999999999887777899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhh
Q 018957 244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (348)
Q Consensus 244 ~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfr 323 (348)
.+++++. +.+++||++||||+||+.||++++...+ .++||++|++|+|+||.+|++++|+|+|+|||||
T Consensus 180 ~~I~~~~---~~dv~Vi~lIGER~rEv~efi~~~l~~~--------~l~rtvvv~atsd~p~~~R~~a~~~A~tiAEyfr 248 (444)
T PRK08972 180 GMMTRGT---TADVIVVGLVGERGREVKEFIEEILGEE--------GRARSVVVAAPADTSPLMRLKGCETATTIAEYFR 248 (444)
T ss_pred HHhccCC---CCCEEEEEEEcCChHHHHHHHHHhhccC--------CcccEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8776532 4589999999999999999999875554 4679999999999999999999999999999999
Q ss_pred hcCCCcEEEEEechhHHHhhhccc
Q 018957 324 DAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 324 d~~G~dVLli~DslTR~A~A~~e~ 347 (348)
| +|+||||+||||||||+|++||
T Consensus 249 d-~G~~VLl~~DslTR~A~A~REI 271 (444)
T PRK08972 249 D-QGLNVLLLMDSLTRYAQAQREI 271 (444)
T ss_pred H-cCCCEEEEEcChHHHHHHHHHH
Confidence 9 8999999999999999999997
No 24
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=2.2e-61 Score=490.65 Aligned_cols=243 Identities=16% Similarity=0.235 Sum_probs=214.8
Q ss_pred eEEEEECCEEEEEeCCCChhhh-hceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCccc
Q 018957 89 QVCQVIGAVVDVRFDEGLPPIL-TALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRVT 167 (348)
Q Consensus 89 ~V~~V~G~vV~v~f~~glp~i~-~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~~l 167 (348)
+|++|.|.++++. |++++. +++..+..+.....+|+ .++++.+.+++|+++.||+.|+.|.+||++++||||++|
T Consensus 4 ~V~~v~~~i~~v~---Gl~~~~~ge~~~~~~~~~~~g~V~-~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~l 79 (507)
T PRK07165 4 KIKSIFDYIVEVK---GEYDYQQNQFFTLKNNPNVKAFVI-SATEDKAYLLINNEKGKIKINDELIELNNTNKVKTSKEY 79 (507)
T ss_pred EEEEEeceEEEEE---cccCCCcCCEEEECCCCeEEEEEE-EEeCCeEEEEEccCccCCCCCCEEEECCCccEEECCccc
Confidence 7899999999997 884443 33333322222444554 567788999999999999999999999999999999999
Q ss_pred cccEEeeeCcccccCCCCcc-----cccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHH
Q 018957 168 LGRIMNVIGEPIDEKGDLKT-----EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242 (348)
Q Consensus 168 LGRViD~lG~PiD~~g~i~~-----~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L 242 (348)
||||+|++|+|||+++++.. ...+|++++||+|++|.++++||+||||+||+|+|||||||++||||+|+|||+|
T Consensus 80 LGRVvd~lG~piDg~g~i~~~~~~~~~~~~i~~~ap~~~~R~~v~epL~TGIkaID~l~pigrGQR~~Ifg~~gtGKT~l 159 (507)
T PRK07165 80 FGKIIDIDGNIIYPEAQNPLSKKFLPNTSSIFNLAHGLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKTHI 159 (507)
T ss_pred cCCEECCCCcccCCCCCCCcccccccccccccCCCCCchhhCCCCceeecCchhhhhcCCcccCCEEEeecCCCCCccHH
Confidence 99999999999999987755 4577999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHh
Q 018957 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322 (348)
Q Consensus 243 ~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyf 322 (348)
+.++|.||+. ++.+|||++||||+||+.+|+++|++.++ ++||++|++++| ||.+|+++||+|||+||||
T Consensus 160 al~~I~~q~~-~dv~~V~~~IGer~~ev~~~~~~l~~~ga--------l~~tvvV~atsd-~~~~r~~ap~~a~tiAEyf 229 (507)
T PRK07165 160 ALNTIINQKN-TNVKCIYVAIGQKRENLSRIYETLKEHDA--------LKNTIIIDAPST-SPYEQYLAPYVAMAHAENI 229 (507)
T ss_pred HHHHHHHhcC-CCeEEEEEEccCChHHHHHHHHHhhhcCc--------eeeeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 8777878753 33468999999999999999999999885 469999999985 9999999999999999999
Q ss_pred hhcCCCcEEEEEechhHHHhhhccc
Q 018957 323 RDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 323 rd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|| + +|||++||||||||+|++||
T Consensus 230 rd-~-~dVLlv~DdLTr~A~A~REi 252 (507)
T PRK07165 230 SY-N-DDVLIVFDDLTKHANIYREI 252 (507)
T ss_pred Hh-c-CceEEEEcChHHHHHHHHHH
Confidence 99 7 99999999999999999996
No 25
>PRK06936 type III secretion system ATPase; Provisional
Probab=100.00 E-value=3e-61 Score=484.53 Aligned_cols=248 Identities=27% Similarity=0.418 Sum_probs=220.0
Q ss_pred CCceeeEEEEECCEEEEEeCCCChhhhhceEEee-c-Cc-eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCce
Q 018957 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVD-H-SV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPIT 160 (348)
Q Consensus 84 ~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~-~-~~-~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~ 160 (348)
...+|+|++|.|.++++. +....+++++.+. . .. .+..||+.+.++..+ +++|++++||+.|++|.+||++++
T Consensus 21 ~~~~G~V~~v~g~~v~~~---~~~~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~-l~~~~~~~gi~~g~~V~~tg~~~~ 96 (439)
T PRK06936 21 IQIRGRVTQVTGTILKAV---VPGVRIGELCYLRNPDNSLSLQAEVIGFAQHQAL-LTPLGEMYGISSNTEVSPTGTMHQ 96 (439)
T ss_pred cceeeEEEEEECcEEEEE---eCCCCCCCEEEEecCCCCcceEEEEEEEECCeEE-EEecCCCCCCCCCCEEEeCCCceE
Confidence 455799999999999986 3334444544432 2 22 478899999777655 999999999999999999999999
Q ss_pred ecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHH
Q 018957 161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (348)
Q Consensus 161 VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT 240 (348)
||||++|||||+|++|+|||+++++....++|++++||||++|.++++||+|||++||.|+|+++|||++|||++|+|||
T Consensus 97 v~vg~~lLGRV~d~~G~plD~~~~~~~~~~~pi~~~~p~p~~R~~i~~~l~TGi~vid~l~~i~~Gq~~~I~G~sG~GKS 176 (439)
T PRK06936 97 VGVGEHLLGRVLDGLGQPFDGGHPPEPAAWYPVYADAPAPMSRRLIETPLSLGVRVIDGLLTCGEGQRMGIFAAAGGGKS 176 (439)
T ss_pred EEeCccccCCEECCCCCccCCCCCCCccceeeccCCCCChHHccccCCCCcCCcceeeeeEEecCCCEEEEECCCCCChH
Confidence 99999999999999999999998887777889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHH
Q 018957 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320 (348)
Q Consensus 241 ~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAE 320 (348)
||+.+++++. +.+++||++||||+||++||+++.... +.++||++|++|+|+||.+|++++|+|+|+||
T Consensus 177 tLl~~Ia~~~---~~dv~V~~liGERgrEv~ef~~~~l~~--------~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAE 245 (439)
T PRK06936 177 TLLASLIRSA---EVDVTVLALIGERGREVREFIESDLGE--------EGLRKAVLVVATSDRPSMERAKAGFVATSIAE 245 (439)
T ss_pred HHHHHHhcCC---CCCEEEEEEEccCcHHHHHHHHHHhcc--------cccceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 9998777653 458999999999999999988664322 24689999999999999999999999999999
Q ss_pred HhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 321 HFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 321 yfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|||| +||||||++||+||||+|++||
T Consensus 246 yfrd-~G~~Vll~~DslTR~A~A~REi 271 (439)
T PRK06936 246 YFRD-QGKRVLLLMDSVTRFARAQREI 271 (439)
T ss_pred HHHH-cCCCEEEeccchhHHHHHHHHH
Confidence 9999 8999999999999999999996
No 26
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=6.1e-61 Score=474.95 Aligned_cols=249 Identities=27% Similarity=0.447 Sum_probs=237.4
Q ss_pred CCceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecC
Q 018957 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (348)
Q Consensus 84 ~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpV 163 (348)
..+.|+|++|.+.|+.|. ||.+++ ..|+++++ ..+.+++++++++.|.++++++...|+.|++|+.||+.+.|||
T Consensus 25 ~~~~g~V~sv~DgIa~v~---Gl~~~~-~~E~~ef~-~~v~G~alnle~d~VG~vi~g~~~~i~eG~~v~~Tg~i~~Vpv 99 (504)
T COG0056 25 VKEVGTVISVGDGIARVS---GLENVM-AGELVEFP-GGVKGMALNLEEDSVGAVILGDYSDIKEGDEVKRTGRILEVPV 99 (504)
T ss_pred hhccceEEEEecceEEEe---cCchhh-cCceEEec-CCcEEEEEeccccceeEEEecCCccccCCcEEEeeCceEEEec
Confidence 346799999999999997 999998 57888876 5689999999999999999999999999999999999999999
Q ss_pred CccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHH
Q 018957 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (348)
Q Consensus 164 G~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~ 243 (348)
|++++|||+|++|+|+|+++++......|++..+|+.++|.+++|||+||||+||+|+|||||||.+|+|++++|||+++
T Consensus 100 g~~llGRVVn~lG~pidgkg~i~~~~~~~~e~~Apgv~~RksV~ePlqTGikaIDamiPIGRGQRELIIGDRQTGKTaIA 179 (504)
T COG0056 100 GEELLGRVVDALGNPIDGKGPIDATKTRPVEKKAPGVMDRKSVNEPLQTGIKAIDALIPIGRGQRELIIGDRQTGKTAIA 179 (504)
T ss_pred chhhcceeecCCCCccCCCCCccccccCccccccCceecccccCchhhhhhHHHhhhcccCCCceEEEeccCcCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhh
Q 018957 244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (348)
Q Consensus 244 ~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfr 323 (348)
.++|.||. ..+.+||||+||++.+.+..+++.|+++|+ |++|+||+++++||+.++|++||+|||+|||||
T Consensus 180 idtIiNQk-~~~v~CIYVAIGQK~stva~vv~tL~e~gA--------mdyTiVV~AsASd~a~lqYLaPy~g~a~aE~f~ 250 (504)
T COG0056 180 IDTIINQK-GSGVKCIYVAIGQKRSTVANVVRTLEEHGA--------MDYTIVVAASASDSAPLQYLAPYAGCAMAEYFR 250 (504)
T ss_pred HHHHHhcc-cCCcEEEEEEcccchHHHHHHHHHHHHcCC--------ccceEEEEecCCcchhhhhhhhhhhhHHHHHHH
Confidence 99999994 456789999999999999999999999984 579999999999999999999999999999999
Q ss_pred hcCCCcEEEEEechhHHHhhhccc
Q 018957 324 DAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 324 d~~G~dVLli~DslTR~A~A~~e~ 347 (348)
| +|+|||++|||+|+||.|+|++
T Consensus 251 ~-~G~dvLIVyDDLsKhA~AYRei 273 (504)
T COG0056 251 D-NGKDVLIVYDDLSKHAVAYREI 273 (504)
T ss_pred h-cCCeEEEEecCchHHHHHHHHH
Confidence 9 8999999999999999999986
No 27
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=100.00 E-value=1.5e-59 Score=447.64 Aligned_cols=182 Identities=25% Similarity=0.394 Sum_probs=169.6
Q ss_pred CceecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCC
Q 018957 158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGV 237 (348)
Q Consensus 158 ~l~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~Gv 237 (348)
+++||||++|||||+|++|+|||+++++...+++|+++++|++++|.+++|||+||||+||+|+||+||||+||||++|+
T Consensus 1 ~~~Vpvg~~lLGRVvd~lG~piD~~~~~~~~~~~~i~~~ap~~~~R~~i~e~l~TGIkaID~l~pig~GQR~gIfgg~Gv 80 (276)
T cd01135 1 TLKVPVSEDMLGRIFNGSGKPIDGGPEILAEEYLDINGPPINPVARIYPEEMIQTGISAIDGMNTLVRGQKIPIFSGSGL 80 (276)
T ss_pred CcEEECChhhcCCEECCCCCCCCCCCCCCCCceeeccCCCcCchhcCCcccccccCcEeeecccccccCCEEEeecCCCC
Confidence 47899999999999999999999998887777899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHH---hhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHH
Q 018957 238 GKTVLIMELINNVA---KAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLT 314 (348)
Q Consensus 238 GKT~L~~~ii~n~a---~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~ 314 (348)
|||+|+.+|++|.. +.+.++|||++||||+||+.+|+++|.+.++ ++||++|++|+|+||++|++++|+
T Consensus 81 GKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~--------l~~tv~v~~t~~~~~~~r~~a~~~ 152 (276)
T cd01135 81 PHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGA--------LERVVLFLNLANDPTIERIITPRM 152 (276)
T ss_pred ChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCC--------cceEEEEEecCCCCHHHHHHHHHH
Confidence 99999999776532 1235899999999999999999999998874 469999999999999999999999
Q ss_pred HHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 315 GLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 315 a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|+|+||||||++|+|||++|||+||||+|++||
T Consensus 153 a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEi 185 (276)
T cd01135 153 ALTTAEYLAYEKGKHVLVILTDMTNYAEALREI 185 (276)
T ss_pred HHHHHHHHHhccCCeEEEEEcChhHHHHHHHHH
Confidence 999999999944999999999999999999997
No 28
>PRK05922 type III secretion system ATPase; Validated
Probab=100.00 E-value=2.1e-58 Score=463.80 Aligned_cols=247 Identities=25% Similarity=0.429 Sum_probs=221.8
Q ss_pred CceeeEEEEECCEEEEEeCCCChhhhhceEEee-c-CceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceec
Q 018957 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVD-H-SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP 162 (348)
Q Consensus 85 ~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~-~-~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~Vp 162 (348)
..+|+|++|.|++++++ |+...+++++.+. . +....+||+.+ .++.+.+++|+++.||+.|+.|..++++++||
T Consensus 18 ~~~g~v~~v~g~~i~~~---g~~~~~ge~~~i~~~~~~~~~~eVv~~-~~~~~~l~~~~~~~gi~~G~~V~~~~~~~~v~ 93 (434)
T PRK05922 18 RECGLLSRVSGNLLEAQ---GLSACLGELCQISLSKSPPILAEVIGF-HNRTTLLMSLSPIHYVALGAEVLPLRRPPSLH 93 (434)
T ss_pred eeeeEEEEEEccEEEEE---eCCCCCCCEEEEecCCCCeeEEEEEEE-eCCeEEEEEccCCCCCCCCCEEEeCCCCcEEE
Confidence 36799999999999997 6665556655443 1 23477899987 55567799999999999999999999999999
Q ss_pred CCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHH
Q 018957 163 VGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242 (348)
Q Consensus 163 VG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L 242 (348)
+|++|||||+|++|+|||+++++....++|++.+||+|++|.+++++|+||||+||.|+|+++|||++|||++|+|||+|
T Consensus 94 vg~~llGrv~d~~G~pld~~~~~~~~~~~pi~~~~~~~~~R~~i~e~l~TGIr~ID~ll~I~~GqrigI~G~nG~GKSTL 173 (434)
T PRK05922 94 LSDHLLGRVLDGFGNPLDGKEQLPKTHLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSL 173 (434)
T ss_pred cChhhcCCEeCCCCCccCCCCCCCccceeecccCCCChhhcCCcceecCCCceeecceEEEcCCcEEEEECCCCCChHHH
Confidence 99999999999999999999887766778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHh
Q 018957 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322 (348)
Q Consensus 243 ~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyf 322 (348)
+.+++++ .+.+++||++||||++|+.++++++.+.. .+++|++|++|+|+||.+|++++|+|+|+||||
T Consensus 174 L~~Ia~~---~~~d~gvi~liGerg~ev~eyl~q~~~~~--------~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEyf 242 (434)
T PRK05922 174 LSTIAKG---SKSTINVIALIGERGREVREYIEQHKEGL--------AAQRTIIIASPAHETAPTKVIAGRAAMTIAEYF 242 (434)
T ss_pred HHHHhcc---CCCCceEEEEeCCCCchHHHHHHHHHhhc--------cccceEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 8766643 24588999999999999999998887654 246899999999999999999999999999999
Q ss_pred hhcCCCcEEEEEechhHHHhhhccc
Q 018957 323 RDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 323 rd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|| +|+||||++|||||||+|++||
T Consensus 243 rd-~G~~VLl~~DslTR~A~A~REi 266 (434)
T PRK05922 243 RD-QGHRVLFIMDSLSRWIAALQEV 266 (434)
T ss_pred HH-cCCCEEEeccchhHHHHHHHHH
Confidence 99 7999999999999999999997
No 29
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=6.2e-58 Score=459.00 Aligned_cols=244 Identities=27% Similarity=0.463 Sum_probs=219.8
Q ss_pred eeEEEEECCEEEEEeCCCChhhhhceEEee--cCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCc
Q 018957 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVD--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR 165 (348)
Q Consensus 88 G~V~~V~G~vV~v~f~~glp~i~~~lev~~--~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~ 165 (348)
|+|++|.|+++++++. ...++++..+. .+.....||+.+ .++.+.+++|+++.||++|+.|..||++++||+|+
T Consensus 1 G~v~~v~g~~v~v~g~---~~~~ge~~~i~~~~~~~~~~eVv~~-~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~ 76 (411)
T TIGR03496 1 GRVTRVVGLVLEAVGL---RAPVGSRCEIESSDGDPIEAEVVGF-RGDRVLLMPLEDVEGLRPGARVFPLEGPLRLPVGD 76 (411)
T ss_pred CEEEEEECcEEEEEeC---CCCcCCEEEEEcCCCCeEEEEEEEe-cCCEEEEEEccCccCCCCCCEEEECCCccEEEcch
Confidence 7999999999999844 33334543333 222468899987 67789999999999999999999999999999999
Q ss_pred cccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHHH
Q 018957 166 VTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245 (348)
Q Consensus 166 ~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~ 245 (348)
+|||||+|++|+|||+.+++....+||++++||||++|..+++++.||+++||.++|+++|||++|||++|+|||+|+..
T Consensus 77 ~llGrVid~~G~pld~~~~~~~~~~~~i~~~~~~~~~R~~~~~~~~tGi~~id~l~~i~~Gq~~~I~G~sG~GKTtLl~~ 156 (411)
T TIGR03496 77 SLLGRVIDGLGRPLDGKGPLDAGERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVGKSTLLGM 156 (411)
T ss_pred hhcCCEECCCCCCcCCCCCCCcccccccccCCCCHHhccCcceEeeeeEEeecceEEEecCcEEEEECCCCCCHHHHHHH
Confidence 99999999999999999888777889999999999999999999999999999999999999999999999999999876
Q ss_pred HHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhc
Q 018957 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325 (348)
Q Consensus 246 ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~ 325 (348)
++++. +.++.||++||||++|+.+|++++.+.++ ++||++|++|+|+||.+|++++|+|+|+||||||
T Consensus 157 I~~~~---~~~~~vi~~iGer~~ev~e~~~~~~~~~~--------~~~tvvv~~tsd~~~~~r~~a~~~a~tiAEyfr~- 224 (411)
T TIGR03496 157 MARYT---EADVVVVGLIGERGREVKEFIEDILGEEG--------LARSVVVAATADESPLMRLRAAFYATAIAEYFRD- 224 (411)
T ss_pred HhcCC---CCCEEEEEEEecChHHHHHHHHHHhhCCC--------cceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 65432 34788999999999999999999988774 4799999999999999999999999999999999
Q ss_pred CCCcEEEEEechhHHHhhhccc
Q 018957 326 EGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 326 ~G~dVLli~DslTR~A~A~~e~ 347 (348)
+|+||||+||||||||+|+|||
T Consensus 225 ~G~~Vll~~Dsltr~A~A~REi 246 (411)
T TIGR03496 225 QGKDVLLLMDSLTRFAMAQREI 246 (411)
T ss_pred CCCCEEEEEeChHHHHHHHHHH
Confidence 7999999999999999999996
No 30
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=6.4e-58 Score=459.12 Aligned_cols=245 Identities=29% Similarity=0.510 Sum_probs=217.1
Q ss_pred eeEEEEECCEEEEEeCCCChhhhhceEEee-cCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCcc
Q 018957 88 GQVCQVIGAVVDVRFDEGLPPILTALEVVD-HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRV 166 (348)
Q Consensus 88 G~V~~V~G~vV~v~f~~glp~i~~~lev~~-~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~~ 166 (348)
|+|++|.|++++++++. +.+...+++.. .+....+||+++. ++.+.+++|+++.||++|+.|..||++++||+|++
T Consensus 1 G~V~~i~G~~i~v~~~~--~~ige~~~i~~~~~~~~~~eVi~~~-~~~v~l~~~~~t~gl~~G~~V~~tg~~~~vpvg~~ 77 (413)
T TIGR03497 1 GKVTRVIGLTIESKGPK--AKIGELCSILTKGGKPVLAEVVGFK-EENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKG 77 (413)
T ss_pred CeEEEEECCEEEEEeCC--CCcCCEEEEEeCCCCeEEEEEEEEc-CCeEEEEEccCccCCCCCCEEEEcCCeeEEEcchh
Confidence 79999999999998641 33333244431 2345789999997 55688999999999999999999999999999999
Q ss_pred ccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHHHH
Q 018957 167 TLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (348)
Q Consensus 167 lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~i 246 (348)
|||||+|++|+|||+++++....+||+++.||+|++|..+++++.||+|+||.|+|+++|||++|||++|+|||+|+.++
T Consensus 78 lLGRVid~~G~plD~~~~~~~~~~~~i~~~~p~~~~R~~~~~~~~tGi~~iD~l~~i~~Gqri~I~G~sG~GKTtLl~~i 157 (413)
T TIGR03497 78 LLGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMI 157 (413)
T ss_pred hcCCEEcCCCCcccCCCCCCCCccccccCCCcChHHccchhhhccccceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999999999998887777899999999999999999999999999999999999999999999999999998766
Q ss_pred HHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcC
Q 018957 247 INNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAE 326 (348)
Q Consensus 247 i~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~ 326 (348)
+++ . +.+..||+++|||++|+.+++++..+. +.++|+++|++|+|+||.+|++++|+|+|+|||||| +
T Consensus 158 ~~~-~--~~~~gvi~~~Ger~~ev~e~~~~~l~~--------~~~~~~v~v~~tsd~~~~~r~~~~~~a~tiAEyfr~-~ 225 (413)
T TIGR03497 158 ARN-A--KADINVIALIGERGREVRDFIEKDLGE--------EGLKRSVVVVATSDQPALMRLKAAFTATAIAEYFRD-Q 225 (413)
T ss_pred hCC-C--CCCeEEEEEEccchHHHHHHHHHHhcc--------cccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-C
Confidence 543 2 458889999999999999988774332 245799999999999999999999999999999999 7
Q ss_pred CCcEEEEEechhHHHhhhccc
Q 018957 327 GQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 327 G~dVLli~DslTR~A~A~~e~ 347 (348)
|+||||++|||||||+|+|||
T Consensus 226 G~~Vll~~Dsltr~A~A~rEi 246 (413)
T TIGR03497 226 GKDVLLMMDSVTRFAMAQREI 246 (413)
T ss_pred CCCEEEEEcCcHHHHHHHHHH
Confidence 999999999999999999996
No 31
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1e-57 Score=460.39 Aligned_cols=247 Identities=26% Similarity=0.444 Sum_probs=223.8
Q ss_pred CceeeEEEEECCEEEEEeCCCChhhhhceEEeec-Cc----eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCc
Q 018957 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH-SV----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPI 159 (348)
Q Consensus 85 ~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~-~~----~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l 159 (348)
..+|+|++|.|.++++. |++.-+++++.+.. +. ....||+++ +++.+.+++|+++.||+.|+.|+.||+++
T Consensus 26 ~~~g~v~~v~g~~~~~~---g~~~~~ge~c~i~~~~~~~~~~~~~eVv~~-~~~~~~l~~~~~~~gi~~g~~V~~tg~~~ 101 (451)
T PRK05688 26 VVEGRLLRMVGLTLEAE---GLRAAVGSRCLVINDDSYHPVQVEAEVMGF-SGDKVFLMPVGSVAGIAPGARVVPLADTG 101 (451)
T ss_pred ceeeEEEEEEecEEEEe---cCCCCCCCEEEEecCCCccccceEEEEEEE-cCCEEEEEEccCccCCCCCCEEEECCCcc
Confidence 44699999999999997 66555566555432 22 478899997 77778899999999999999999999999
Q ss_pred eecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcH
Q 018957 160 TVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239 (348)
Q Consensus 160 ~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGK 239 (348)
+||||++|||||+|++|+|||+++++....++|++.+||||++|.++++||+|||++||.|+|+++|||++|||++|+||
T Consensus 102 ~v~vg~~llGRV~d~~G~plD~~~~~~~~~~~~i~~~~~~p~~R~~i~~~l~TGi~aID~l~~I~~GqrigI~G~sG~GK 181 (451)
T PRK05688 102 RLPMGMSMLGRVLDGAGRALDGKGPMKAEDWVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVGRGQRLGLFAGTGVGK 181 (451)
T ss_pred EEEecccccCCEEeccCceecCCCCCCccceecccCCCCCHHHcccccCCcccceeeecceEEecCCcEEEEECCCCCCH
Confidence 99999999999999999999999888777788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHH
Q 018957 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA 319 (348)
Q Consensus 240 T~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiA 319 (348)
|+|+.++..+ .+.+++||++||+|++|+.++++++...+ .++|+++|++|+|+||.+|++++|+|+|+|
T Consensus 182 STLl~~I~g~---~~~dv~V~g~Ig~rg~ev~~~~~~~~~~~--------~l~rsvvv~atsd~~p~~r~~a~~~a~aiA 250 (451)
T PRK05688 182 SVLLGMMTRF---TEADIIVVGLIGERGREVKEFIEHILGEE--------GLKRSVVVASPADDAPLMRLRAAMYCTRIA 250 (451)
T ss_pred HHHHHHHhCC---CCCCEEEEEEeCcCcHhHHHHHHHHhhcC--------CccEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 9999766543 24578899999999999999999998776 357999999999999999999999999999
Q ss_pred HHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 320 EHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 320 Eyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
||||| +|+||||+||||||||+|++||
T Consensus 251 Eyfrd-~G~~VLl~~DslTR~A~A~REi 277 (451)
T PRK05688 251 EYFRD-KGKNVLLLMDSLTRFAQAQREI 277 (451)
T ss_pred HHHHH-CCCCEEEEecchhHHHHHHHHH
Confidence 99999 8999999999999999999997
No 32
>PRK09099 type III secretion system ATPase; Provisional
Probab=100.00 E-value=1.1e-57 Score=459.92 Aligned_cols=248 Identities=30% Similarity=0.491 Sum_probs=222.0
Q ss_pred CCceeeEEEEECCEEEEEeCCCChhhhhceEEee--cCc-eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCce
Q 018957 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVD--HSV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPIT 160 (348)
Q Consensus 84 ~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~--~~~-~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~ 160 (348)
...+|+|++|.|++++++ |+...++++..+. .+. ....||+.+. ++.+.+++|+++.||+.|++|.+||++++
T Consensus 22 ~~~~G~V~~v~g~~i~~~---g~~~~~ge~~~i~~~~g~~~~~~eVv~~~-~~~~~l~~~~~t~gi~~g~~V~~tg~~~~ 97 (441)
T PRK09099 22 VRRTGKVVEVIGTLLRVS---GLDVTLGELCELRQRDGTLLQRAEVVGFS-RDVALLSPFGELGGLSRGTRVIGLGRPLS 97 (441)
T ss_pred ceEeeEEEEEECCEEEEe---ccCCCCCCEEEEecCCCCeeeEEEEEEEE-CCEEEEEEccCCcCCCCCCEEEeCCCccE
Confidence 345799999999999997 6655555554442 122 2678999875 45677999999999999999999999999
Q ss_pred ecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHH
Q 018957 161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (348)
Q Consensus 161 VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT 240 (348)
||||++|||||+|++|+|||+++++....++|++..||||++|.++++||+||+++||.|+|+++|||++|||++|+|||
T Consensus 98 v~vg~~lLGrV~d~~G~piD~~~~~~~~~~~~i~~~~p~p~~R~~i~e~l~TGi~~ID~l~~i~~Gq~~~I~G~sG~GKT 177 (441)
T PRK09099 98 VPVGPALLGRVIDGLGEPIDGGGPLDCDELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGIFAPAGVGKS 177 (441)
T ss_pred EEeccccccCEEcccCCccCCCCCCccccccccccCCCChhhcCCcccccCCCceeccceeeecCCCEEEEECCCCCCHH
Confidence 99999999999999999999998887777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHH
Q 018957 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320 (348)
Q Consensus 241 ~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAE 320 (348)
+|+.+++.+. +.+.+||++||||+||+.+|++++.+.+ .++|+++|++|+|+||.+|++++|+|+|+||
T Consensus 178 tLl~~ia~~~---~~d~~vi~~iGer~~ev~ef~~~~~~~~--------~l~rtvvv~~tsd~p~~~r~~a~~~a~tiAE 246 (441)
T PRK09099 178 TLMGMFARGT---QCDVNVIALIGERGREVREFIELILGED--------GMARSVVVCATSDRSSIERAKAAYVATAIAE 246 (441)
T ss_pred HHHHHHhCCC---CCCeEEEEEEccChHHHHHHHHHHhhcC--------CcceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 9998776543 3478999999999999999999987665 4579999999999999999999999999999
Q ss_pred HhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 321 HFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 321 yfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|||| +||||||++||+||||+|++||
T Consensus 247 yfrd-~G~~VLl~~DslTr~A~A~REi 272 (441)
T PRK09099 247 YFRD-RGLRVLLMMDSLTRFARAQREI 272 (441)
T ss_pred HHHH-cCCCEEEeccchhHHHHHHHHH
Confidence 9999 7999999999999999999996
No 33
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=100.00 E-value=2.2e-58 Score=439.91 Aligned_cols=182 Identities=80% Similarity=1.229 Sum_probs=173.8
Q ss_pred CceecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCC
Q 018957 158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGV 237 (348)
Q Consensus 158 ~l~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~Gv 237 (348)
+++||||++|||||+|++|+|||+++++...++|||++++||+++|.+++++|+||||+||+|+|||||||++|||++|+
T Consensus 1 ~~~vpvg~~llGRv~d~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~~~e~L~TGIr~ID~l~pig~GQr~~If~~~G~ 80 (274)
T cd01133 1 PISVPVGPETLGRIFNVLGEPIDERGPIKTKKTWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGV 80 (274)
T ss_pred CcEEecChhhcCCEECCCCCccCCCCCCCccccccccCCCCCchhhcCcCcccccCceeeeccCCcccCCEEEEecCCCC
Confidence 57899999999999999999999998887778899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHH
Q 018957 238 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317 (348)
Q Consensus 238 GKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~t 317 (348)
|||+|++++++|+++++.++|||++||||+||+++|+++|.+.++ ++||++|++|+|+||.+|++++|+|+|
T Consensus 81 GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~--------~~~tvvv~~t~d~~~~~r~~~~~~a~~ 152 (274)
T cd01133 81 GKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGV--------LSKTALVYGQMNEPPGARARVALTGLT 152 (274)
T ss_pred ChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCC--------cceeEEEEECCCCCHHHHHHHHHHHHH
Confidence 999999999999977778899999999999999999999998874 479999999999999999999999999
Q ss_pred HHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 318 VAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 318 iAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
+||||||++|+||||++|||||||+|+||+
T Consensus 153 ~AEyfr~~~g~~Vl~~~Dsltr~a~A~rei 182 (274)
T cd01133 153 MAEYFRDEEGQDVLLFIDNIFRFTQAGSEV 182 (274)
T ss_pred HHHHHHHhcCCeEEEEEeChhHHHHHHHHH
Confidence 999999944999999999999999999996
No 34
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=3.1e-57 Score=454.39 Aligned_cols=244 Identities=32% Similarity=0.513 Sum_probs=215.9
Q ss_pred eeEEEEECCEEEEEeCCCChh--hhhceEEeec--CceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecC
Q 018957 88 GQVCQVIGAVVDVRFDEGLPP--ILTALEVVDH--SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (348)
Q Consensus 88 G~V~~V~G~vV~v~f~~glp~--i~~~lev~~~--~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpV 163 (348)
|+|++|.|++++++ |+.. .++++..+.. +.....||+.+ +++.+.+++|++++||++|+.|..|+++++|||
T Consensus 1 G~v~~v~g~~~~v~---g~~~~~~~ge~~~i~~~~~~~~~~eVv~~-~~~~v~l~~~~~~~gi~~G~~V~~tg~~~~i~v 76 (418)
T TIGR03498 1 GRVTAVTGLLIEVR---GLSRAVRLGDRCAIRARDGRPVLAEVVGF-NGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRP 76 (418)
T ss_pred CEEEEEECcEEEEE---cCCCccCCCCEEEEEcCCCCEEEEEEEEE-cCCeEEEEEccCCcCCCCCCEEEECCCccEEEe
Confidence 79999999999997 6554 3445444432 22467899986 667788999999999999999999999999999
Q ss_pred CccccccEEeeeCcccccCCCCccc-ccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHH
Q 018957 164 GRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242 (348)
Q Consensus 164 G~~lLGRViD~lG~PiD~~g~i~~~-~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L 242 (348)
|++|||||+|++|+|||+++++... .+||+++.||+|++|.++++||+||+++||.++|+++|||++|||++|+|||+|
T Consensus 77 g~~lLGRViD~lG~plD~~~~~~~~~~~~~i~~~~p~~~~R~~i~~~l~tGi~aiD~~~~i~~Gq~i~I~G~sG~GKTtL 156 (418)
T TIGR03498 77 HPSWLGRVINALGEPIDGKGPLPQGERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGVGKSTL 156 (418)
T ss_pred ChhhcCCEECCCCCccCCCCCCCCCcceechhhcCCChhhccCcccccCCccEEEeeeccccCCcEEEEECCCCCChHHH
Confidence 9999999999999999999887555 468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHh
Q 018957 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322 (348)
Q Consensus 243 ~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyf 322 (348)
+..++.+. +.+..+|+++|||+||+.+|++++...+ .++||++|++|+|+||.+|+++||+|+|+||||
T Consensus 157 l~~I~~~~---~~~~gvi~~iGer~~ev~~~~~~~l~~~--------~~~~tvvv~atsd~~~~~r~~a~~~a~~iAEyf 225 (418)
T TIGR03498 157 LSMLARNT---DADVVVIALVGERGREVREFLEDDLGEE--------GLKRSVVVVATSDESPLMRRQAAYTATAIAEYF 225 (418)
T ss_pred HHHHhCCC---CCCEEEEEEEeeechHHHHHHHHhhhcc--------ccceeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 97555432 3578899999999999999888754433 467999999999999999999999999999999
Q ss_pred hhcCCCcEEEEEechhHHHhhhccc
Q 018957 323 RDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 323 rd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|| +|+||||+||||||||+|++|+
T Consensus 226 rd-~G~~Vll~~DslTr~A~A~REi 249 (418)
T TIGR03498 226 RD-QGKDVLLLMDSVTRFAMAQREI 249 (418)
T ss_pred HH-cCCCEEEeccchhHHHHHHHHH
Confidence 99 8999999999999999999986
No 35
>PRK06820 type III secretion system ATPase; Validated
Probab=100.00 E-value=8.3e-57 Score=453.11 Aligned_cols=244 Identities=27% Similarity=0.386 Sum_probs=217.8
Q ss_pred ceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCc
Q 018957 86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR 165 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~ 165 (348)
.+|+|++|.|.++.+. +....++++..++.+ +...||+.+.++ .+.+++|+++.||++|++|..||++++||||+
T Consensus 29 ~~G~v~~v~g~~~~~~---~~~~~~ge~~~i~~~-~~~~eVv~~~~~-~~~l~~~~~~~gi~~g~~v~~tg~~~~v~vg~ 103 (440)
T PRK06820 29 YRGPIVEIGPTLLRAS---LPGVAQGELCRIEPQ-GMLAEVVSIEQE-MALLSPFASSDGLRCGQWVTPLGHMHQVQVGA 103 (440)
T ss_pred EeeEEEEEECcEEEEE---ECCCCcCCEEEEecC-CeEEEEEEEeCC-eEEEEEccCccCCCCCCEEEECCCCcEEEech
Confidence 4699999999999986 333444555444332 478899988655 57899999999999999999999999999999
Q ss_pred cccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHHH
Q 018957 166 VTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245 (348)
Q Consensus 166 ~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~ 245 (348)
+|||||+|++|+|||+++++ ...++|+++.+|||++|.+++++++||||+||.|+|+++|||++|||++|+|||+|+.+
T Consensus 104 ~llGrv~d~~G~pld~~~~~-~~~~~~i~~~~p~p~~R~~~~~~l~TGi~aID~l~~i~~Gqri~I~G~sG~GKStLl~~ 182 (440)
T PRK06820 104 DLAGRILDGLGAPIDGGPPL-TGQWRELDCPPPSPLTRQPIEQMLTTGIRAIDGILSCGEGQRIGIFAAAGVGKSTLLGM 182 (440)
T ss_pred hhcCCEECccCCccCCCCCC-CcccccccCCCCChhhcCCchhhccCCCceecceEEecCCCEEEEECCCCCChHHHHHH
Confidence 99999999999999998866 45678999999999999999999999999999999999999999999999999999975
Q ss_pred HHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhc
Q 018957 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325 (348)
Q Consensus 246 ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~ 325 (348)
++. + .+.+++||++||||++|+.++++++...+ .+.|+++|++++|+||.+|++++|+|+|+||||||
T Consensus 183 I~~-~--~~~dv~V~~~iGergrEv~ef~e~~l~~~--------~~~rtvvv~atsd~p~~~r~~a~~~a~tiAEyfrd- 250 (440)
T PRK06820 183 LCA-D--SAADVMVLALIGERGREVREFLEQVLTPE--------ARARTVVVVATSDRPALERLKGLSTATTIAEYFRD- 250 (440)
T ss_pred Hhc-c--CCCCEEEEEEEccChHHHHHHHHHhhccC--------CceeEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 554 3 25689999999999999999998887665 34799999999999999999999999999999999
Q ss_pred CCCcEEEEEechhHHHhhhccc
Q 018957 326 EGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 326 ~G~dVLli~DslTR~A~A~~e~ 347 (348)
+|+||||+|||+||||+|++||
T Consensus 251 ~G~~VLl~~Dsltr~A~A~REi 272 (440)
T PRK06820 251 RGKKVLLMADSLTRYARAAREI 272 (440)
T ss_pred cCCCEEEEccchhHHHHHHHHH
Confidence 8999999999999999999997
No 36
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=5e-57 Score=454.68 Aligned_cols=248 Identities=25% Similarity=0.415 Sum_probs=221.3
Q ss_pred CCceeeEEEEECCEEEEEeCCCChhhhhceEEeec-Cc----eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEec---
Q 018957 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH-SV----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNT--- 155 (348)
Q Consensus 84 ~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~-~~----~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~t--- 155 (348)
...+|+|++|.|.++++. |+....++++.+.. +. .+.+||+.+ .++.+.+++|++++||..|+.|.++
T Consensus 25 ~~~~G~v~~v~g~~v~~~---g~~~~iG~~c~i~~~~~~~~~~~~~eVvg~-~~~~~~l~~~~~~~gi~~g~~v~~~~~~ 100 (455)
T PRK07960 25 VRRYGRLTRATGLVLEAT---GLQLPLGATCVIERQNGSETHEVESEVVGF-NGQRLFLMPLEEVEGILPGARVYARNIS 100 (455)
T ss_pred cccccEEEEEEEEEEEEe---CCCCCCCCEEEEEeCCCccccceeeeEEEe-cCCEEEEEECCCccCCCCCCEEEECCcc
Confidence 345799999999999987 66555566555422 22 367899998 4556779999999999999999999
Q ss_pred ----CCCceecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEe
Q 018957 156 ----GSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGL 231 (348)
Q Consensus 156 ----g~~l~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gI 231 (348)
|++++||||++|||||+|++|+|||+++++....++|++++||||++|.++++|++||||+||+|+|+++|||++|
T Consensus 101 ~~~~~~~~~v~vg~~llGRvid~~G~piDg~~~~~~~~~~~i~~~~~~p~~R~~i~e~l~TGiraID~ll~I~~Gqri~I 180 (455)
T PRK07960 101 GEGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAPDTGETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGL 180 (455)
T ss_pred cccCCCceEEECCcccccCEECCCccccCCCCCCCCCccccccCCCcChHHhcccccchhccceeeeecccccCCcEEEE
Confidence 9999999999999999999999999998887667789999999999999999999999999999999999999999
Q ss_pred ecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHH
Q 018957 232 FGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARV 311 (348)
Q Consensus 232 fg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a 311 (348)
||++|+|||+|+..++.+ .+.+++|+++||||++|+.++++++.+.+ .+++++||++++|+||.+|+++
T Consensus 181 ~G~sG~GKTTLL~~Ia~~---~~~d~iv~g~Igerg~ev~e~~~~~~~~~--------~~~~tvVv~~~ad~~~~~r~~~ 249 (455)
T PRK07960 181 FAGSGVGKSVLLGMMARY---TQADVIVVGLIGERGREVKDFIENILGAE--------GRARSVVIAAPADVSPLLRMQG 249 (455)
T ss_pred ECCCCCCccHHHHHHhCC---CCCCEEEEEEEEECCeEHHHHHHhhcCcC--------CCceEEEEEECCCCCHHHHHHH
Confidence 999999999999766643 24578899999999999999988876554 4679999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 312 GLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 312 ~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
+|+|+|+|||||| +|||||+++|||||||+|++||
T Consensus 250 ~~~a~tiAEyfrd-~G~~Vll~~DslTr~A~A~rEi 284 (455)
T PRK07960 250 AAYATRIAEDFRD-RGQHVLLIMDSLTRYAMAQREI 284 (455)
T ss_pred HHHHHHHHHHHHH-cCCCeEEEecchhHHHHHHHHH
Confidence 9999999999999 8999999999999999999997
No 37
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=100.00 E-value=4.2e-57 Score=430.66 Aligned_cols=179 Identities=26% Similarity=0.473 Sum_probs=167.5
Q ss_pred ceecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCc
Q 018957 159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG 238 (348)
Q Consensus 159 l~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvG 238 (348)
++||||++|||||+|++|+|||+++++...++||++.++|++++|..+++||+||||+||+|+||+||||++|||++|+|
T Consensus 2 ~~vpvg~~lLGRvld~~G~piD~~~~~~~~~~~~i~~~~p~~~~R~~i~e~L~TGI~~ID~l~pigrGQr~~Ifg~~g~G 81 (274)
T cd01132 2 ADVPVGEALLGRVVDALGNPIDGKGPIETKERRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQTG 81 (274)
T ss_pred eEEECCHhhCCCEEccCCCCccCCCCcCcCceeeccCCCCChhhcCCcccccccCCEEeeccCCcccCCEEEeeCCCCCC
Confidence 68999999999999999999999988877788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHH
Q 018957 239 KTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318 (348)
Q Consensus 239 KT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~ti 318 (348)
||+|+.++|.|+++ ++.+|||++||||+||+.||+++|++.++ ++||++|++|+|+||.+|++++|+|||+
T Consensus 82 Kt~L~l~~i~~~~~-~~v~~V~~~iGer~~ev~e~~~~~~~~~~--------~~~tvvv~~t~d~~~~~r~~a~~~a~ai 152 (274)
T cd01132 82 KTAIAIDTIINQKG-KKVYCIYVAIGQKASTVAQVVKTLEEHGA--------MEYTIVVAATASDPAPLQYLAPYTGCAM 152 (274)
T ss_pred ccHHHHHHHHHhcC-CCeEEEEEecccchHHHHHHHHHHHhcCc--------cceeEEEEeCCCCchhHHHHHHHHHHHH
Confidence 99997667766642 34567999999999999999999999874 4699999999999999999999999999
Q ss_pred HHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 319 AEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 319 AEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|||||| +||||||+||||||||+|++|+
T Consensus 153 AE~fr~-~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 153 GEYFMD-NGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHH-CCCCEEEEEcChHHHHHHHHHH
Confidence 999999 7999999999999999999996
No 38
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=100.00 E-value=8.8e-56 Score=444.94 Aligned_cols=244 Identities=25% Similarity=0.404 Sum_probs=217.5
Q ss_pred ceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCc
Q 018957 86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR 165 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~ 165 (348)
.+|+|++|.|.++++. +....++++..+.. .+...||+.+.+++ +.+++|+++.||+.|++|.+||++++||||+
T Consensus 21 ~~G~v~~v~g~~~~~~---~~~~~~ge~~~i~~-~~~~~eVv~~~~~~-~~l~~~~~~~gi~~g~~V~~tg~~~~v~vg~ 95 (433)
T PRK07594 21 RWGRIQDVSATLLNAW---LPGVFMGELCCIKP-GEELAEVVGINGSK-ALLSPFTSTIGLHCGQQVMALRRRHQVPVGE 95 (433)
T ss_pred eeeEEEEEECCEEEEE---ECCcCCCCEEEEec-CCeEEEEEEEcCCe-EEEEEccCCcCCCCCCEEEeCCCccEEEeCh
Confidence 4699999999999986 44444555554432 34788999986665 5599999999999999999999999999999
Q ss_pred cccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHHH
Q 018957 166 VTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245 (348)
Q Consensus 166 ~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~ 245 (348)
+|||||+|++|+|||++++. ...++|++..+|||++|..+++++.||+++||.|+|+++|||++|||++|+|||+|+..
T Consensus 96 ~llGrVid~~G~pld~~~~~-~~~~~~i~~~~p~~~~r~~v~~~l~tGi~aID~ll~i~~GqrigI~G~sG~GKSTLL~~ 174 (433)
T PRK07594 96 ALLGRVIDGFGRPLDGRELP-DVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGIFSAPGVGKSTLLAM 174 (433)
T ss_pred hhccCEEcccCCCcCCCCCC-cccccccccCCCCceeccCHhheeCCCceeeeeeeecCCCCEEEEECCCCCCccHHHHH
Confidence 99999999999999998774 45678999999999999999999999999999999999999999999999999999976
Q ss_pred HHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhc
Q 018957 246 LINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDA 325 (348)
Q Consensus 246 ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~ 325 (348)
++++ . +.+.+||+++|||++|+.++++++.+.+ .++|+++|++++|+|+.+|++++|+|+|+||||||
T Consensus 175 I~~~-~--~~d~~vi~~iGeRgrEv~efl~~~~~~~--------~~~rtv~vv~tsd~p~~~r~~a~~~a~tiAEyfrd- 242 (433)
T PRK07594 175 LCNA-P--DADSNVLVLIGERGREVREFIDFTLSEE--------TRKRCVIVVATSDRPALERVRALFVATTIAEFFRD- 242 (433)
T ss_pred hcCC-C--CCCEEEEEEECCCchHHHHHHHHhhccC--------CcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-
Confidence 6543 2 4578999999999999999998876654 45799999999999999999999999999999999
Q ss_pred CCCcEEEEEechhHHHhhhccc
Q 018957 326 EGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 326 ~G~dVLli~DslTR~A~A~~e~ 347 (348)
+||||||+|||+||||+|++||
T Consensus 243 ~G~~VLl~~Dsltr~A~A~REi 264 (433)
T PRK07594 243 NGKRVVLLADSLTRYARAAREI 264 (433)
T ss_pred CCCcEEEEEeCHHHHHHHHHHH
Confidence 7999999999999999999997
No 39
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=100.00 E-value=1.2e-55 Score=445.68 Aligned_cols=248 Identities=29% Similarity=0.451 Sum_probs=218.1
Q ss_pred CceeeEEEEECCEEEEEeCCCChhhhhceEEee--cCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceec
Q 018957 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVD--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP 162 (348)
Q Consensus 85 ~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~--~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~Vp 162 (348)
..+|+|++|.|+++++.++ .+.+.+.+++.. .+..+.+||+++.+ +.+.+++|++++||++|++|.+||++++||
T Consensus 22 ~~~G~v~~i~G~~v~~~~~--~~~~ge~~~i~~~~~~~~~~~eVi~~~~-~~v~l~~~~~t~gl~~G~~V~~tg~~~~v~ 98 (440)
T TIGR01026 22 KRVGRVTKVKGLLIEAVGP--QASVGDLCLIERRGSEGRLVAEVVGFNG-EFVFLMPYEEVEGVRPGSKVLATGEGLSIK 98 (440)
T ss_pred ceeeEEEEEEeeEEEEEcC--CCCcCCEEEEeecCCCCcEEEEEEEecC-CEEEEEEccCCcCCCCCCEEEeCCCccEEE
Confidence 4579999999999998753 233433234421 12337889999865 678899999999999999999999999999
Q ss_pred CCccccccEEeeeCcccccCC-CCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHH
Q 018957 163 VGRVTLGRIMNVIGEPIDEKG-DLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV 241 (348)
Q Consensus 163 VG~~lLGRViD~lG~PiD~~g-~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~ 241 (348)
||++|||||+|++|+|||+++ ++.....+|+++.||||++|.++++++.||+++||.++|+++|||++|||++|+|||+
T Consensus 99 vg~~llGRVid~~G~plD~~~~~~~~~~~~~i~~~~~~p~~R~~~~e~l~TGi~~iD~l~~i~~Gq~~~I~G~sG~GKSt 178 (440)
T TIGR01026 99 VGDGLLGRVLDGLGKPIDGKGKFLDNVETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGKGQRIGIFAGSGVGKST 178 (440)
T ss_pred cChhhhhceecCCCcccCCCCCCCCCccccccccCCCChHHccCccccccceeeeeeeccccCCCcEEEEECCCCCCHHH
Confidence 999999999999999999988 6655667899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHH
Q 018957 242 LIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH 321 (348)
Q Consensus 242 L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEy 321 (348)
|+..++.+ .+.++.||+++|||++|+.++++++...+ .++||++|++++|+||.+|+++||+|+|+|||
T Consensus 179 Ll~~I~~~---~~~~~~vi~~iG~r~~ev~~~~~~~~~~~--------~l~~tvvv~~~~d~~p~~r~~~~~~a~t~AE~ 247 (440)
T TIGR01026 179 LLGMIARN---TEADVNVIALIGERGREVREFIEHDLGEE--------GLKRSVVVVATSDQSPLLRLKGAYVATAIAEY 247 (440)
T ss_pred HHHHHhCC---CCCCEEEEEEEeecchHHHHHHHHHhccc--------ccceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 99766543 24578899999999999999888765443 46799999999999999999999999999999
Q ss_pred hhhcCCCcEEEEEechhHHHhhhccc
Q 018957 322 FRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 322 frd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
||| +|+||||++|||||||+|++||
T Consensus 248 frd-~G~~Vll~~DslTr~A~A~REi 272 (440)
T TIGR01026 248 FRD-QGKDVLLLMDSVTRFAMAQREI 272 (440)
T ss_pred HHH-CCCCEEEEEeChHHHHHHHHHH
Confidence 999 7999999999999999999996
No 40
>PRK08149 ATP synthase SpaL; Validated
Probab=100.00 E-value=3.2e-55 Score=440.32 Aligned_cols=246 Identities=25% Similarity=0.405 Sum_probs=215.5
Q ss_pred ceeeEEEEECCEEEEEeCCCChhhhhceEEeec---CceeE--EEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCce
Q 018957 86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH---SVRLV--LEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPIT 160 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~---~~~~~--~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~ 160 (348)
.+|+|++|.|++++++ +...-+++++.+.. +.... +||+.+ .++.+.+++|+++.||+.|++|..++++++
T Consensus 6 ~~g~v~~i~g~~i~~~---~~~~~~ge~~~i~~~~~~~~~~~~~evv~~-~~~~~~l~~~~~~~gi~~g~~v~~~~~~~~ 81 (428)
T PRK08149 6 RLAHPLRIQGPIIEAE---LPDVAIGEICEIRAGWHSNEVIARAQVVGF-QRERTILSLIGNAQGLSRQVVLKPTGKPLS 81 (428)
T ss_pred eeeEEEEEEeeEEEEE---ECCCCcCCEEEEeecCCCCceeeEEEEEEe-eCcEEEEEECCCccCCCCCCEEEEcCCcCE
Confidence 4699999999999997 43344455443321 22333 678876 555677999999999999999999999999
Q ss_pred ecCCccccccEEeeeCcccccCC--CCc--ccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCC
Q 018957 161 VPVGRVTLGRIMNVIGEPIDEKG--DLK--TEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG 236 (348)
Q Consensus 161 VpVG~~lLGRViD~lG~PiD~~g--~i~--~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~G 236 (348)
||+|++|||||+|++|+|||+++ +.. ...++|++++||||++|..+++||+||+++||.++|+++|||++|||++|
T Consensus 82 v~vg~~llGrv~d~~G~piD~~~~~~~~~~~~~~~~i~~~~~~~~~R~~i~e~l~tGi~aid~ll~i~~Gq~i~I~G~sG 161 (428)
T PRK08149 82 VWVGEALLGAVLDPTGKIVERFDAPPTVGPISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGIFASAG 161 (428)
T ss_pred EEeChhhcCCeeCCCCCCcCCCCCCcccccccceeehhccCCcchhccCccccccCCcEEEeeeeeEecCCEEEEECCCC
Confidence 99999999999999999999886 332 24678999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHH
Q 018957 237 VGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316 (348)
Q Consensus 237 vGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~ 316 (348)
+|||||+.+++++ .+.+++||++||+|++|+.++++++.+.+. ++|+++|++|+|+||.+|++++|+|+
T Consensus 162 ~GKTTLl~~i~~~---~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~--------~~~~~vV~~~sd~p~~~r~~a~~~a~ 230 (428)
T PRK08149 162 CGKTSLMNMLIEH---SEADVFVIGLIGERGREVTEFVESLRASSR--------REKCVLVYATSDFSSVDRCNAALVAT 230 (428)
T ss_pred CChhHHHHHHhcC---CCCCeEEEEEEeeCCccHHHHHHHHhhccc--------ccceEEEEECCCCCHHHHHhHHHHHH
Confidence 9999999876653 245788999999999999999999987763 46999999999999999999999999
Q ss_pred HHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 317 TVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 317 tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|+|||||| +||||||++|||||||+|++||
T Consensus 231 tiAE~fr~-~G~~Vll~~DslTr~A~A~rEi 260 (428)
T PRK08149 231 TVAEYFRD-QGKRVVLFIDSMTRYARALRDV 260 (428)
T ss_pred HHHHHHHH-cCCCEEEEccchHHHHHHHHHh
Confidence 99999999 7999999999999999999997
No 41
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=4.1e-55 Score=440.18 Aligned_cols=247 Identities=26% Similarity=0.466 Sum_probs=218.8
Q ss_pred CCceeeEEEEECCEEEEEeCCCChhhhhceEEeec-C--ceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCce
Q 018957 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH-S--VRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPIT 160 (348)
Q Consensus 84 ~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~-~--~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~ 160 (348)
...+|+|++|.|++++++ |+..-++++..+.. + ....+||+.+ +++.+.+++|+++.||+.|++|..|+++++
T Consensus 16 ~~~~G~v~~v~g~~v~~~---g~~~~~ge~~~i~~~~~~~~~~~eVv~~-~~~~~~l~~~~~t~gl~~G~~V~~tg~~~~ 91 (434)
T PRK08472 16 SPRFGSITKISPTIIEAD---GLNPSVGDIVKIESSDNGKECLGMVVVI-EKEQFGISPFSFIEGFKIGDKVFISKEGLN 91 (434)
T ss_pred ceeeeEEEEEEccEEEEE---ecCCCCCCEEEEecCCCCCceEEEEEEE-eCCeEEEEEccCCCCCCCCCEEEeCCCceE
Confidence 345799999999999996 65555555444432 1 3477898877 566688999999999999999999999999
Q ss_pred ecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHH
Q 018957 161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (348)
Q Consensus 161 VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT 240 (348)
||+|++|||||+|++|+|||+++++....++|++++||||++|.++++++.||+++||.|+|+++||+++|||++|+|||
T Consensus 92 v~vg~~llGRViD~~G~plD~~g~~~~~~~~~i~~~~~~~~~R~~i~~~l~tgi~aid~l~~i~~Gq~~~i~G~sG~GKS 171 (434)
T PRK08472 92 IPVGRNLLGRVVDPLGRPIDGKGAIDYERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGIFAGSGVGKS 171 (434)
T ss_pred EEcChhhcCCEECCCCCcccCCCCCCcccccccccCCCCHHHcCCcceeccchhHHhhhcceecCCCEEEEECCCCCCHH
Confidence 99999999999999999999998876667889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHH
Q 018957 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320 (348)
Q Consensus 241 ~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAE 320 (348)
+|+..++.+. +.+++||+++|||++|+.+++++.. .+ .++++++|++|+|+||++|++++|+|+++||
T Consensus 172 tLl~~i~~~~---~~~v~vi~~iGergrev~e~~~~~l-~~--------~l~~tvvV~atsddsp~~R~~~~~~a~~iAE 239 (434)
T PRK08472 172 TLMGMIVKGC---LAPIKVVALIGERGREIPEFIEKNL-GG--------DLENTVIVVATSDDSPLMRKYGAFCAMSVAE 239 (434)
T ss_pred HHHHHHhhcc---CCCEEEEEeeCccchhHHHHHHHHh-cC--------cccceEEEEECCCCCHHHhhHHHHHHHHHHH
Confidence 9998777543 3589999999999999988776432 11 2579999999999999999999999999999
Q ss_pred HhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 321 HFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 321 yfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|||| +|+||||+|||+||||+|++||
T Consensus 240 yFrd-~G~~Vll~~DslTr~A~A~REi 265 (434)
T PRK08472 240 YFKN-QGLDVLFIMDSVTRFAMAQREI 265 (434)
T ss_pred HHHH-cCCCEEEecccchHHHHHHHHH
Confidence 9999 7999999999999999999997
No 42
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=5.1e-55 Score=441.03 Aligned_cols=249 Identities=24% Similarity=0.405 Sum_probs=215.7
Q ss_pred CCceeeEEEEECCEEEEEeCCCChhhhhceEEeec-Cc--eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCce
Q 018957 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH-SV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPIT 160 (348)
Q Consensus 84 ~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~-~~--~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~ 160 (348)
...+|+|++|.|++++++++. ..+...+++... +. .+.+||+++.+++ +.+++|+++.||++|++|.+||++++
T Consensus 16 ~~~~G~v~~i~G~~i~~~~~~--~~ige~~~i~~~~~~~~~~~~EVi~~~~~~-~~l~~~~~~~gl~~g~~V~~tg~~~~ 92 (438)
T PRK07721 16 YKRYGKVSRVIGLMIESKGPE--SSIGDVCYIHTKGGGDKAIKAEVVGFKDEH-VLLMPYTEVAEIAPGCLVEATGKPLE 92 (438)
T ss_pred cceecEEEEEECcEEEEEECC--CCchheEEEEecCCCCceEEEEEEEEcCCE-EEEEEccCccCCCCCCEEEECCCccE
Confidence 345799999999999998642 233322344221 11 4789999998777 67999999999999999999999999
Q ss_pred ecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHH
Q 018957 161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (348)
Q Consensus 161 VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT 240 (348)
||||++|||||+|++|+|||+.+......++|++++||+|++|.+++++|+||+++||.|+|+++||+++|||++|+|||
T Consensus 93 v~vg~~llGRv~d~~G~plD~~~~~~~~~~~~i~~~~p~p~~R~~i~~~l~tg~~vid~l~~i~~Gq~i~I~G~sG~GKS 172 (438)
T PRK07721 93 VKVGSGLIGQVLDALGEPLDGSALPKGLAPVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKS 172 (438)
T ss_pred EEechhhcCCEECcCCCccCCCCCCCccccCCccCCCCChhhccCcccccccchhhhheeeeecCCcEEEEECCCCCCHH
Confidence 99999999999999999999987444446789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHH
Q 018957 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320 (348)
Q Consensus 241 ~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAE 320 (348)
+|+..++.+ . +.+..+|+++|||++|+.+++++..+. ..+.|+++|++|+|+|+.+|++++|+|+|+||
T Consensus 173 tLl~~I~~~-~--~~~~gvI~~~Gerg~ev~e~~~~~l~~--------~~l~r~v~vv~~~~~~~~~r~~~~~~a~~iAE 241 (438)
T PRK07721 173 TLMGMIARN-T--SADLNVIALIGERGREVREFIERDLGP--------EGLKRSIVVVATSDQPALMRIKGAYTATAIAE 241 (438)
T ss_pred HHHHHHhcc-c--CCCeEEEEEEecCCccHHHHHHhhcCh--------hhhcCeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 999766543 2 457789999999999998877663222 23579999999999999999999999999999
Q ss_pred HhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 321 HFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 321 yfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|||| +|+||||+||||||||+|++||
T Consensus 242 yfr~-~g~~Vll~~Dsltr~A~A~rEi 267 (438)
T PRK07721 242 YFRD-QGLNVMLMMDSVTRVAMAQREI 267 (438)
T ss_pred HHHH-CCCcEEEEEeChHHHHHHHHHH
Confidence 9999 7999999999999999999986
No 43
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=100.00 E-value=6.3e-53 Score=424.45 Aligned_cols=246 Identities=28% Similarity=0.503 Sum_probs=217.8
Q ss_pred ceeeEEEEECCEEEEEeCCCChhhhhceEEee-c-CceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecC
Q 018957 86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVD-H-SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~-~-~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpV 163 (348)
.+|+|++|.|+++++.+. ...++++..+. . ...+..||+++.+++ +.+++|++++||++|+.|..||++++||+
T Consensus 5 ~~G~V~~v~g~~v~v~~~---~~~~ge~~~i~~~~~~~~~~eVi~~~~~~-~~l~~~~~~~gl~~G~~V~~tg~~~~v~v 80 (422)
T TIGR02546 5 VRGRVTEVSGTLLKAVLP---GARVGELCLIRRRDPSQLLAEVVGFTGDE-ALLSPLGELHGISPGSEVIPTGRPLSIRV 80 (422)
T ss_pred eeEEEEEEECcEEEEEEC---CCCCCCEEEEeeCCCCeEEEEEEEEcCCc-EEEEEccCccCCCCCCEEEECCCCceEEe
Confidence 469999999999999743 22234443332 1 235788999987765 66999999999999999999999999999
Q ss_pred CccccccEEeeeCcccccCCCCcccc--cccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHH
Q 018957 164 GRVTLGRIMNVIGEPIDEKGDLKTEH--YLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV 241 (348)
Q Consensus 164 G~~lLGRViD~lG~PiD~~g~i~~~~--~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~ 241 (348)
|++|||||+|++|+|||+++++.... +||++++||||++|.++++||+||+++||.++|+++|||++|||++|+|||+
T Consensus 81 g~~lLGrViD~~G~plD~~~~~~~~~~~~~pi~~~~~~~~~R~~i~~~l~tG~~~id~l~~i~~Gq~~~I~G~sG~GKSt 160 (422)
T TIGR02546 81 GEALLGRVLDGFGRPLDGKGELPAGEIETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKST 160 (422)
T ss_pred ChhhccCEeCCCCCcccCCCCCCCCCceeeeccCCCcCHHHccCcccccCCCceeehhhccccCCCEEEEECCCCCChHH
Confidence 99999999999999999998876553 6899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHH
Q 018957 242 LIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH 321 (348)
Q Consensus 242 L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEy 321 (348)
|+..++.+. +.+.++|++||||++|+.++++++...+ .++++++|++++|+|+.+|++++|+|+++|||
T Consensus 161 Ll~~I~~~~---~~~~~vi~~iG~~~~ev~~~~~~~~~~~--------~~~~tvvv~~~s~~p~~~r~~~~~~a~~~AE~ 229 (422)
T TIGR02546 161 LLGMIARGA---SADVNVIALIGERGREVREFIEHHLGEE--------GRKRSVLVVSTSDRPSLERLKAAYTATAIAEY 229 (422)
T ss_pred HHHHHhCCC---CCCEEEEEEEccCCcCHHHHHHHHhccc--------cccceEEEeccccCCHHHHHHHHHHHHHHHHH
Confidence 987665532 4588999999999999999888876554 35799999999999999999999999999999
Q ss_pred hhhcCCCcEEEEEechhHHHhhhccc
Q 018957 322 FRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 322 frd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
||| +|+|||+++||+||||+|++|+
T Consensus 230 f~~-~g~~Vl~~~Dsltr~a~A~rei 254 (422)
T TIGR02546 230 FRD-QGKRVLLMMDSLTRFARALREI 254 (422)
T ss_pred HHH-CCCcEEEEEeCchHHHHHHHHH
Confidence 999 8999999999999999999997
No 44
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.5e-52 Score=422.37 Aligned_cols=245 Identities=29% Similarity=0.424 Sum_probs=213.7
Q ss_pred CceeeEEEEECCEEEEEeCCCC--hhhhhceEEeec-CceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCcee
Q 018957 85 GAIGQVCQVIGAVVDVRFDEGL--PPILTALEVVDH-SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITV 161 (348)
Q Consensus 85 ~~~G~V~~V~G~vV~v~f~~gl--p~i~~~lev~~~-~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~V 161 (348)
..+|+|++|.|.++++. |+ ...+++++.++. ......||+.+ .++.+.+++|+++.||+.|++|.. ++++++
T Consensus 25 ~~~G~v~~v~g~~~~~~---g~~~~~~iGe~~~i~~~~~~~~~eVv~~-~~~~~~l~~~~~~~gi~~g~~v~~-~~~~~v 99 (450)
T PRK06002 25 RIGGTVSEVTASHYRVR---GLSRFVRLGDFVAIRADGGTHLGEVVRV-DPDGVTVKPFEPRIEIGLGDAVFR-KGPLRI 99 (450)
T ss_pred ceeEEEEEEeceEEEEE---cCccCCCCCCEEEEECCCCcEEEEEEEE-eCCeEEEEEccCCcCCCCCCEEEe-CCCcee
Confidence 44699999999999987 77 344455544432 22367788877 555677999999999999999999 668999
Q ss_pred cCCccccccEEeeeCcccccCCCCcccc-cccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHH
Q 018957 162 PVGRVTLGRIMNVIGEPIDEKGDLKTEH-YLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (348)
Q Consensus 162 pVG~~lLGRViD~lG~PiD~~g~i~~~~-~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT 240 (348)
++|++|||||+|++|+|||+.+++.... ++|+++++|++++|..+++++.||+++||.|+||++|||++|||++|+|||
T Consensus 100 ~vg~~llGRV~d~~G~piDg~~~~~~~~~~~~i~~~~p~~~~r~~v~~~l~TGi~aID~L~~I~~Gqri~I~G~SGsGKT 179 (450)
T PRK06002 100 RPDPSWKGRVINALGEPIDGLGPLAPGTRPMSIDATAPPAMTRARVETGLRTGVRVIDIFTPLCAGQRIGIFAGSGVGKS 179 (450)
T ss_pred ecCcccccCEECCCCcCCCCCCCCCCCcceeeccCCCCCCeEeecceEEcCCCcEEeeeeceecCCcEEEEECCCCCCHH
Confidence 9999999999999999999998876544 579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHH
Q 018957 241 VLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320 (348)
Q Consensus 241 ~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAE 320 (348)
||+..+.. . .+.+..+|+++|||++|+.+++++.... .++|+++|++|+|+||.+|++++|+|+|+||
T Consensus 180 TLL~~Ia~-l--~~pd~gvv~liGergrev~e~~~~~l~~---------~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAE 247 (450)
T PRK06002 180 TLLAMLAR-A--DAFDTVVIALVGERGREVREFLEDTLAD---------NLKKAVAVVATSDESPMMRRLAPLTATAIAE 247 (450)
T ss_pred HHHHHHhC-C--CCCCeeeeeecccCCccHHHHhHHHHHH---------hhCCeEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 99975543 2 2457889999999999999887765443 2468999999999999999999999999999
Q ss_pred HhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 321 HFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 321 yfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|||| +|+||||++|||||||+|++||
T Consensus 248 yfrd-~G~~Vll~~DslTr~A~A~rEi 273 (450)
T PRK06002 248 YFRD-RGENVLLIVDSVTRFAHAAREV 273 (450)
T ss_pred HHHH-cCCCEEEeccchHHHHHHHHHH
Confidence 9999 7999999999999999999996
No 45
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=3.1e-52 Score=419.18 Aligned_cols=247 Identities=26% Similarity=0.378 Sum_probs=219.0
Q ss_pred cCCceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceec
Q 018957 83 GKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP 162 (348)
Q Consensus 83 ~~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~Vp 162 (348)
....+|+|++|.|.++++. |+...+++++.+. +..+.+||+.+.+++ +.+++|++++||++|+.|..||++++||
T Consensus 18 ~~~~~g~v~~~~g~~~~~~---g~~~~ige~~~i~-~~~~~~eV~~~~~~~-~~~~~~~~~~gi~~g~~v~~~~~~~~v~ 92 (432)
T PRK06793 18 FYTKVGKVHSVQEQFFVAK---GPKAKIGDVCFVG-EHNVLCEVIAIEKEN-NMLLPFEQTEKVCYGDSVTLIAEDVVIP 92 (432)
T ss_pred ccceeeEEEEEEEEEEEEE---cCCCCcCCEEEEC-CCCEEEEEEEecCCc-EEEEEccCccCCCCCCEEEECCCccEEE
Confidence 3455799999999999986 6555555654443 335788999986666 5799999999999999999999999999
Q ss_pred CCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHH
Q 018957 163 VGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242 (348)
Q Consensus 163 VG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L 242 (348)
||++|||||+|++|+|+|+++++....++|++.+||+|++|..+++++.||+++||.++|+++|||++|||++|+|||+|
T Consensus 93 vg~~~lGrV~d~~G~piD~~~~~~~~~~~~i~~~~~~~~~r~~i~~~l~TGiraID~ll~I~~Gqri~I~G~sG~GKTtL 172 (432)
T PRK06793 93 RGNHLLGKVLSANGEVLNEEAENIPLQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKIGIFAGSGVGKSTL 172 (432)
T ss_pred cCHhhccCEECcCCccCCCCCCCCCcccccccCCCCCchheechhhccCCCCEEEeccceecCCcEEEEECCCCCChHHH
Confidence 99999999999999999998776656678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHH-HHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHH
Q 018957 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYRE-MIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH 321 (348)
Q Consensus 243 ~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e-~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEy 321 (348)
+.+++.+. +.+..+++++|||++|+.+++++ +.+. .++|+++|++++|+|+++|++++++|+++|||
T Consensus 173 l~~Ia~~~---~~~~gvI~~iGerg~ev~e~~~~~l~~~---------gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEy 240 (432)
T PRK06793 173 LGMIAKNA---KADINVISLVGERGREVKDFIRKELGEE---------GMRKSVVVVATSDESHLMQLRAAKLATSIAEY 240 (432)
T ss_pred HHHHhccC---CCCeEEEEeCCCCcccHHHHHHHHhhhc---------ccceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 98887654 35778999999999999998764 4333 35799999999999999999999999999999
Q ss_pred hhhcCCCcEEEEEechhHHHhhhccc
Q 018957 322 FRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 322 frd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
||| +|+||||++||+||||+|++||
T Consensus 241 fr~-~G~~VLlilDslTr~a~A~rei 265 (432)
T PRK06793 241 FRD-QGNNVLLMMDSVTRFADARRSV 265 (432)
T ss_pred HHH-cCCcEEEEecchHHHHHHHHHH
Confidence 999 8999999999999999999986
No 46
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=6.3e-52 Score=417.15 Aligned_cols=248 Identities=23% Similarity=0.373 Sum_probs=217.5
Q ss_pred CCceeeEEEEECCEEEEEeCCCChhhhhceEEe-ecCc-eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCcee
Q 018957 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVV-DHSV-RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITV 161 (348)
Q Consensus 84 ~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~-~~~~-~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~V 161 (348)
...+|+|++|.|.++++. |+...+++++.+ ..+. ....||+.+.++ .+.+++|+++.||+.|++|.+||++++|
T Consensus 15 ~~~~G~v~~v~g~~~~~~---~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~-~~~l~~~~~~~gi~~g~~v~~~~~~~~v 90 (434)
T PRK07196 15 ARVAGRLVRVTGLLLESV---GCRLAIGQRCRIESVDETFIEAQVVGFDRD-ITYLMPFKHPGGVLGGARVFPSEQDGEL 90 (434)
T ss_pred cceeeEEEEEEcCEEEEe---cCCCCcCCEEEEEeCCCceEEEEEEEecCC-EEEEEECCCccCCCCCCEEEECCCccEE
Confidence 344699999999999997 555555565444 2123 578899998555 5669999999999999999999999999
Q ss_pred cCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHH
Q 018957 162 PVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV 241 (348)
Q Consensus 162 pVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~ 241 (348)
|||++|||||+|++|+|||+++++.....+|+++++|||++|.++++||+||+++||.++|+++|||++|||++|+||||
T Consensus 91 ~vg~~llGrv~d~~G~pld~~~~~~~~~~~~~~~~~~~p~~R~~~~~~l~TGi~aID~ll~I~~GQ~igI~G~sGaGKST 170 (434)
T PRK07196 91 LIGDSWLGRVINGLGEPLDGKGQLGGSTPLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGKGQRVGLMAGSGVGKSV 170 (434)
T ss_pred EcCccccCCeeCcCCCCcCCCCCCCCCceeeccCCCCChHHhcccccccccceeeccceEeEecceEEEEECCCCCCccH
Confidence 99999999999999999999988766667899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHH
Q 018957 242 LIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH 321 (348)
Q Consensus 242 L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEy 321 (348)
|+..|+. +. +.++.|+++||+|++|+.+++++..... .+.|++++++++|+|+.+|++++++++++|||
T Consensus 171 Ll~~I~g-~~--~~dv~vig~IGerg~ev~ef~~~~l~~~--------gl~rsvvv~~~~d~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 171 LLGMITR-YT--QADVVVVGLIGERGREVKEFIEHSLQAA--------GMAKSVVVAAPADESPLMRIKATELCHAIATY 239 (434)
T ss_pred HHHHHhc-cc--CCCeEEEEEEeeecHHHHHHHHHHhhhc--------ccceEEEEEecCCCChhhhHHHHHHHHHHHHH
Confidence 9876554 32 3478889999999999999886643322 24699999999999999999999999999999
Q ss_pred hhhcCCCcEEEEEechhHHHhhhccc
Q 018957 322 FRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 322 frd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
||+ +|+||||+|||+||||+|++||
T Consensus 240 fr~-~g~~Vll~~Dsltr~a~A~REi 264 (434)
T PRK07196 240 YRD-KGHDVLLLVDSLTRYAMAQREI 264 (434)
T ss_pred hhh-ccCCEEEeecchhHHHhhhhHH
Confidence 999 7999999999999999999997
No 47
>PRK06315 type III secretion system ATPase; Provisional
Probab=100.00 E-value=7.6e-50 Score=402.89 Aligned_cols=248 Identities=29% Similarity=0.488 Sum_probs=216.2
Q ss_pred CceeeEEEEECCEEEEEeCCCChhhhhceEEeecCc--eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceec
Q 018957 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVP 162 (348)
Q Consensus 85 ~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~--~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~Vp 162 (348)
..+|+|++|.|+++++.. .+..+++++.+..+. ...+||+.+.+ +.+.+++|+++.||++|+.|..||++++||
T Consensus 22 ~~~G~v~~i~g~~~~~~~---~~~~~ge~~~i~~~~~~~~~~eVv~~~~-~~~~l~~~~~~~gi~~g~~V~~~g~~~~v~ 97 (442)
T PRK06315 22 TVVGRITEVVGMLIKAVV---PDVRVGEVCLVKRHGMEPLVTEVVGFTQ-NFVFLSPLGELTGVSPSSEVIPTGLPLHIR 97 (442)
T ss_pred eeccEEEEEECCEEEEEE---CCcccCCEEEEecCCCCEEEEEEEEEcC-CeEEEEEccCCcCCCCCCEEEeCCCccEEE
Confidence 446999999999999984 333444544433222 47889999865 678899999999999999999999999999
Q ss_pred CCccccccEEeeeCccccc--CCCCc-ccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcH
Q 018957 163 VGRVTLGRIMNVIGEPIDE--KGDLK-TEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239 (348)
Q Consensus 163 VG~~lLGRViD~lG~PiD~--~g~i~-~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGK 239 (348)
||++|||||+|++|+|||+ ++++. ...++|+++.||+|++|.++++||+||||+||.++|+++|||++|||++|+||
T Consensus 98 vg~~llGrv~d~~G~pld~~~~~~~~~~~~~~~i~~~~~~~~~R~~~~e~l~TGi~aID~~l~i~~Gq~i~I~G~sG~GK 177 (442)
T PRK06315 98 AGNGLLGRVLNGLGEPIDTETKGPLENVDETYPIFRAPPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIFAGAGVGK 177 (442)
T ss_pred ecccccCCEEeccCcccccccCCCcccccceeeeecCCCChHHcccccccccceEEEEeccccccCCcEEEEECCCCCCc
Confidence 9999999999999999998 76664 44678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHH
Q 018957 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA 319 (348)
Q Consensus 240 T~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiA 319 (348)
|+|+..++.+.. +.+..||+++|||++|+.+++++..+.. .++++++|++|+++||.+|+..+++|+++|
T Consensus 178 StLl~~I~~~~~--~~~~~vi~liGerg~ev~~~~~~~l~~~--------g~~~svvvvats~q~p~~rlnp~~va~~IA 247 (442)
T PRK06315 178 SSLLGMIARNAE--EADVNVIALIGERGREVREFIEGDLGEE--------GMKRSVIVVSTSDQSSQLRLNAAYVGTAIA 247 (442)
T ss_pred chHHHHhhcccc--cCCceEEEEECCCchHHHHHHHHHHHhc--------CCceEEEEEeCCCCCHHHHhhHHHHHHHHH
Confidence 999987776542 2366799999999999998887643221 346999999999999999999999999999
Q ss_pred HHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 320 EHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 320 Eyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
||||+ +|+|||+++||+||||+|++|+
T Consensus 248 E~~r~-~g~~Vl~~~Ds~tR~a~alreV 274 (442)
T PRK06315 248 EYFRD-QGKTVVLMMDSVTRFARALREV 274 (442)
T ss_pred HHHHH-cCCCcchhhhHHHHHHHHHHHh
Confidence 99999 7999999999999999999987
No 48
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00 E-value=9e-50 Score=390.63 Aligned_cols=153 Identities=29% Similarity=0.433 Sum_probs=141.9
Q ss_pred ccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccch
Q 018957 189 HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR 268 (348)
Q Consensus 189 ~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~r 268 (348)
+.||+++++|++ +|..+++||+||||+||+|+||+||||++|||++|+|||+|+++|+++ .+.+++||++||||+|
T Consensus 121 ~~~Pv~~~~P~~-~r~~~~~pL~TGirvID~l~Pi~kGqr~~I~G~~G~GKT~L~~~Iak~---~~~dvvVyv~iGERg~ 196 (369)
T cd01134 121 QKWPVRQPRPVK-EKLPPNEPLLTGQRVLDTLFPVVKGGTAAIPGPFGCGKTVIQQSLSKY---SNSDIVIYVGCGERGN 196 (369)
T ss_pred eeeecccCCCcc-ccCCCCCchhccchhhhccccccCCCEEEEECCCCCChHHHHHHHHhC---CCCCEEEEEEeCCChH
Confidence 568999999988 999999999999999999999999999999999999999999988775 2568999999999999
Q ss_pred hHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 269 EGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 269 Ev~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|+.|++++|.+.....++ +..++||++|+||||+|+.+|++++|+|+|+|||||| +|+|||+++||+||||+|++||
T Consensus 197 Ev~e~l~ef~~l~~~~~~-~~~m~rtvlV~nts~~p~~~R~~s~yta~tiAEYfrd-~G~dVll~~Ds~tR~A~A~REI 273 (369)
T cd01134 197 EMTEVLEEFPELTDPVTG-EPLMKRTVLIANTSNMPVAAREASIYTGITIAEYFRD-MGYNVALMADSTSRWAEALREI 273 (369)
T ss_pred HHHHHHHHHHhhcccccc-CCccceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEcChhHHHHHHHHH
Confidence 999999999987654433 3468999999999999999999999999999999999 7999999999999999999997
No 49
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=100.00 E-value=5e-49 Score=395.58 Aligned_cols=250 Identities=29% Similarity=0.431 Sum_probs=220.0
Q ss_pred eeeEEEEECCEEEEEeCCCChhhhhceEEee-cCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCc
Q 018957 87 IGQVCQVIGAVVDVRFDEGLPPILTALEVVD-HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR 165 (348)
Q Consensus 87 ~G~V~~V~G~vV~v~f~~glp~i~~~lev~~-~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~ 165 (348)
.|+|.+|+||+|.++ |+..+. .++++. ++.+++.||+...|+. +.+++|++|.||++|++|.+||+|++|.+|+
T Consensus 2 ~G~i~~isGp~V~a~---gm~~~~-my~~v~Vg~~~L~gEiI~i~gd~-a~iQVyE~T~Gi~~Ge~V~~Tg~pLsvELGP 76 (588)
T COG1155 2 MGKIIRISGPVVVAE---GMEGAK-MYDVVKVGEMGLIGEIIRIEGNR-ATIQVYEDTAGIRPGEKVENTGRPLSVELGP 76 (588)
T ss_pred CceEEEEECCEEEEe---cCcCCc-eEEEEEEcCCceeEEEEEEeCCe-EEEEEEeecCCCCCCCeeecCCCceEEEeCc
Confidence 599999999999886 887654 455543 4568999999986655 6699999999999999999999999999999
Q ss_pred cccccEEeeeCcccccC--------------CCCcc--------------------------------------------
Q 018957 166 VTLGRIMNVIGEPIDEK--------------GDLKT-------------------------------------------- 187 (348)
Q Consensus 166 ~lLGRViD~lG~PiD~~--------------g~i~~-------------------------------------------- 187 (348)
+||+.|+|++.+|||.. +++..
T Consensus 77 Gll~~IyDGiQrPL~~i~e~sg~Fi~RGv~~p~Ldr~~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~ 156 (588)
T COG1155 77 GLLKSIYDGIQRPLDVIKETSGDFIARGLNPPALDRKKKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGK 156 (588)
T ss_pred cHHhhhhhhccChHHHHHHHhhhHhhcCCCCCCCCcccccccccccccCCEeccCceEEEeccCCceEEEEeCCCCCceE
Confidence 99999999999999652 01100
Q ss_pred ------------------------------cccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCC
Q 018957 188 ------------------------------EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGV 237 (348)
Q Consensus 188 ------------------------------~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~Gv 237 (348)
-++||+..+.| ..++.++++||.||+|+||+|+|+.||+.-+|.||+|+
T Consensus 157 v~~i~~~G~ytv~d~ia~v~~~~g~~~~~m~~~WPVR~~rp-~~eKl~p~~Pl~TGqRviDt~FPvaKGGTaaiPGpFGs 235 (588)
T COG1155 157 VTWIAEEGEYTVEDVIATVSTEGGEVDVQMMTTWPVRKARP-VKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGS 235 (588)
T ss_pred EEEEecCCCceeeEEEEEEecCCCeEEEEEEEeccccCCcc-ccccCCCCCcccccceeehhhcccccCccccccCCCCC
Confidence 05799998888 58999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHH
Q 018957 238 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317 (348)
Q Consensus 238 GKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~t 317 (348)
|||++.+++++.. +.|++||++||||++|++|++.+|.+......| +..|+||++++||+|+|..+|+.+.|+|+|
T Consensus 236 GKTV~qh~laK~s---dadiVVyigCGERGNEmtevL~eFPeL~Dp~tg-~~lm~RT~liaNTSnMPVAAREasIYtGiT 311 (588)
T COG1155 236 GKTVSQHTLSKLA---DGDIVIYVGCGERGNEMTEVLQEFPELKDPNTG-QPLMDRTVLIANTSNMPVAAREASIYTGIT 311 (588)
T ss_pred CcEehhhhhhhhc---cCCEEEEEecCCccchHHHHHHhCccccCCCCC-CcccceeeEeecCccchHHHhhhhhhhhhh
Confidence 9999999888753 568999999999999999999999887654333 236899999999999999999999999999
Q ss_pred HHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 318 VAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 318 iAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
+|||||| +|+||+++.||.+|||+|++||
T Consensus 312 iaEY~RD-mGy~v~lmADSTSRWAEAlREi 340 (588)
T COG1155 312 IAEYYRD-MGYDVALMADSTSRWAEALREI 340 (588)
T ss_pred HHHHHHh-hhhhhHHhhchHHHHHHHHHHH
Confidence 9999999 7999999999999999999987
No 50
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=4.9e-48 Score=377.14 Aligned_cols=178 Identities=33% Similarity=0.595 Sum_probs=165.7
Q ss_pred CceecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCC
Q 018957 158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGV 237 (348)
Q Consensus 158 ~l~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~Gv 237 (348)
+++||||++|||||+|++|+|||+.+++...++||++..+|+|++|.++++++.||+++||.++|+++|||++|||++|+
T Consensus 1 ~~~v~vg~~~lGrv~d~~G~pid~~~~~~~~~~~~i~~~~~~~~~R~~~~~~l~tGi~aiD~l~~i~~Gqri~I~G~sG~ 80 (326)
T cd01136 1 PLSVPVGDALLGRVLDAFGEPLDGKGPLGKEVRYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGV 80 (326)
T ss_pred CceeeCCcccccCEECCCCcccCCCCCCCCCccccccCCCcCHHHhccceeEcCCCcEEEeeeeEEcCCcEEEEECCCCC
Confidence 47899999999999999999999998876777899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHH
Q 018957 238 GKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317 (348)
Q Consensus 238 GKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~t 317 (348)
|||+|+..++.+ . +.+++||++||||++|+.++++++.+.+. ++|+++|++|+|+||.+|++++|+|+|
T Consensus 81 GKTtLl~~Ia~~-~--~~~~~vi~~iGer~~ev~~~~~~~~~~~~--------l~rtvvv~~t~d~~~~~r~~~~~~a~~ 149 (326)
T cd01136 81 GKSTLLGMIARG-T--TADVNVIALIGERGREVREFIEKDLGEEG--------LKRSVVVVATSDESPLLRVKAAYTATA 149 (326)
T ss_pred ChHHHHHHHhCC-C--CCCEEEEEEEecCCccHHHHHHHHHhcCc--------cceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 999998766543 2 45789999999999999999998877653 469999999999999999999999999
Q ss_pred HHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 318 VAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 318 iAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
+|||||| +||||||++|||||||+|++|+
T Consensus 150 ~AEyfr~-~g~~Vll~~Dsltr~a~A~rei 178 (326)
T cd01136 150 IAEYFRD-QGKDVLLLMDSLTRFAMAQREI 178 (326)
T ss_pred HHHHHHH-cCCCeEEEeccchHHHHHHHHH
Confidence 9999999 8999999999999999999986
No 51
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=4.3e-46 Score=404.92 Aligned_cols=151 Identities=28% Similarity=0.428 Sum_probs=125.9
Q ss_pred CceeeEEEEECCEEEEEeCCCC-hhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecC
Q 018957 85 GAIGQVCQVIGAVVDVRFDEGL-PPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (348)
Q Consensus 85 ~~~G~V~~V~G~vV~v~f~~gl-p~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpV 163 (348)
+.+|+|++|.|+++.++ |+ ...++++..+. +.++..||+.+.+ +.+.+|+|+++.||+.|++|..||++++|++
T Consensus 2 ~~~G~V~~V~G~lv~a~---g~~~~~iGE~v~I~-~~~l~gEVIg~~~-d~a~iq~~e~t~Gl~~G~~V~~tg~~l~V~l 76 (1017)
T PRK14698 2 PAKGRIIRVTGPLVIAD---GMKGAKMYEVVRVG-ELGLIGEIIRLEG-DKAVIQVYEETAGLKPGEPVEGTGSSLSVEL 76 (1017)
T ss_pred CCceEEEEEEcCEEEEe---cCcCCCCCCEEEEC-CCcEEEEEEEEeC-CEEEEEECCCCCCCCCCCEEEEcCCcceeec
Confidence 35799999999999997 66 23334443333 3458899999854 5566999999999999999999999999999
Q ss_pred CccccccEEeeeCcccccC----C----------CCcc------------------------------------------
Q 018957 164 GRVTLGRIMNVIGEPIDEK----G----------DLKT------------------------------------------ 187 (348)
Q Consensus 164 G~~lLGRViD~lG~PiD~~----g----------~i~~------------------------------------------ 187 (348)
|++|||||+|++|+||+.. + ++..
T Consensus 77 G~~LLGRV~DGlGrPL~~~~~~~~~~i~~g~~~~~l~~~~~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~ 156 (1017)
T PRK14698 77 GPGLLTSIYDGIQRPLEVIREKSGDFIARGISAPALPRDKKWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIE 156 (1017)
T ss_pred CHHHhhcccCCCCChHHHHHHHhcccccCCCCCCCCCCCCeeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCC
Confidence 9999999999999999652 1 1100
Q ss_pred ---------------------------------cccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecC
Q 018957 188 ---------------------------------EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGG 234 (348)
Q Consensus 188 ---------------------------------~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~ 234 (348)
-+.||++.+.| ..++.+++.||.||+|+||+|||+.||+..+|+|+
T Consensus 157 g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~wpvr~~r~-~~~~~~~~~pl~tgqrv~d~~fp~~~ggt~~~~G~ 235 (1017)
T PRK14698 157 GEIVEIADEGEYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGP 235 (1017)
T ss_pred EEEEEEcCCCCcceeeEEEEEEcCCCCEEEeeeEecCCCCCCCc-ccccCCCCcccccccchHhhhhhhhcCceeEeccC
Confidence 05699998886 78999999999999999999999999999999999
Q ss_pred CCCcHHH
Q 018957 235 AGVGKTV 241 (348)
Q Consensus 235 ~GvGKT~ 241 (348)
+|+||++
T Consensus 236 ~G~GKCV 242 (1017)
T PRK14698 236 FGSGKCV 242 (1017)
T ss_pred CCcCccc
Confidence 9999943
No 52
>KOG1352 consensus Vacuolar H+-ATPase V1 sector, subunit A [Energy production and conversion]
Probab=100.00 E-value=5.3e-47 Score=370.77 Aligned_cols=260 Identities=28% Similarity=0.418 Sum_probs=220.4
Q ss_pred ccccccCCceeeEEEEECCEEEEEeCCCChhhh-hceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecC
Q 018957 78 TDEFTGKGAIGQVCQVIGAVVDVRFDEGLPPIL-TALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTG 156 (348)
Q Consensus 78 ~~~~~~~~~~G~V~~V~G~vV~v~f~~glp~i~-~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg 156 (348)
+.+...+..+|+|.+|+||||.++ +|..+. .++--+++ ..++.||+...|+ ...++++++|.|+..||+|.+||
T Consensus 12 ~~~e~~es~~G~v~~VSGPVV~a~---~M~G~aMYELVrVGh-~~LvGEiIrlegD-~aTIQVYEeTsG~tVgDpvlrTg 86 (618)
T KOG1352|consen 12 SLDEEEESEYGRVYSVSGPVVVAE---NMAGCAMYELVRVGH-DELVGEIIRLEGD-MATIQVYEETSGLTVGDPVLRTG 86 (618)
T ss_pred cccchhhhccceEEeccCceEehh---cccchHHHHHHHcch-HhhhhheeEecCc-eeEEEEEeccCCcccCCchhhcC
Confidence 344556788999999999999875 443332 12222244 3689999987554 56699999999999999999999
Q ss_pred CCceecCCccccccEEeeeCcccccCCCC---------------cc----------------------------------
Q 018957 157 SPITVPVGRVTLGRIMNVIGEPIDEKGDL---------------KT---------------------------------- 187 (348)
Q Consensus 157 ~~l~VpVG~~lLGRViD~lG~PiD~~g~i---------------~~---------------------------------- 187 (348)
+|++|.+|++++|.|+|++.+||.....+ ..
T Consensus 87 kPLsvELGPGimgsIfDGIQRPLk~I~~~s~siyiPkGv~~~aL~r~~~weF~p~k~~vg~hitGGDiyg~V~ENsli~h 166 (618)
T KOG1352|consen 87 KPLSVELGPGIMGSIFDGIQRPLKDISELSQSIYIPKGVNTPALDREIKWEFTPGKLRVGDHITGGDIYGSVFENSLIKH 166 (618)
T ss_pred CcceEeeCcchhhhhhhhhhhhHHHHHHhcCcEeccCCCCccccCccceeecccceeeecceeecCceEEEeeccchhhc
Confidence 99999999999999999999999542110 00
Q ss_pred -----------------------------------------cccccccCCCcchhhcccccceeecceeeeeceeecccC
Q 018957 188 -----------------------------------------EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRG 226 (348)
Q Consensus 188 -----------------------------------------~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkG 226 (348)
-+.||++.+.| ..+..+.+.||.||.|++|+|+||++|
T Consensus 167 ki~lpPr~~Gtvt~iAp~G~Y~~~d~vlE~Ef~g~k~~~tmlq~WPVR~pRP-v~ekl~an~PLltGQRvLDalfPcVqG 245 (618)
T KOG1352|consen 167 KILLPPRARGTVTYIAPAGNYTLDDVVLELEFDGEKTKFTMLQTWPVRQPRP-VTEKLPANHPLLTGQRVLDALFPCVQG 245 (618)
T ss_pred eeecCCccCceEEEEecCCccccccEEEEEeecCceeeEEEEEecccCCCcc-hhhccCCCCcccccchHHHhhcchhcC
Confidence 05699988887 789999999999999999999999999
Q ss_pred ceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcc-cCCCeeEEEEecCCCCH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDK-QADSKCALVYGQMNEPP 305 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~-~~~~rtvvV~~tsdep~ 305 (348)
+...|.|.+|||||+|.+.+.+. .+.|.+||++||||++|+.|++++|.+..+.--|.. ..|+||++|+||+|+|.
T Consensus 246 GTtaIPGAFGCGKTVISQsLSKY---SNSD~iiYVGCGERGNEMsEVL~dFPeLt~ev~G~~esiMKRT~LVANTSNMPV 322 (618)
T KOG1352|consen 246 GTTAIPGAFGCGKTVISQSLSKY---SNSDAIIYVGCGERGNEMSEVLMDFPELTMEVDGKTESIMKRTALVANTSNMPV 322 (618)
T ss_pred CccccCcccccchHHHHHHHhhc---cCCCeEEEEcccccchhHHHHHHhChhhEEecCCcchhhhhhhhhhhcCCCCch
Confidence 99999999999999999988764 357999999999999999999999998764222222 36899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 306 GARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 306 ~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
.+|..+.|||+|+|||||| +|+||-.+.||.+|||+|++||
T Consensus 323 AAREASIYTGITlsEYfRD-mG~nVsMmADStSRWAEALREI 363 (618)
T KOG1352|consen 323 AAREASIYTGITLSEYFRD-MGYNVSMMADSTSRWAEALREI 363 (618)
T ss_pred hhhhhhhhhcccHHHHHHh-cCcceeeeecchhHHHHHHHHh
Confidence 9999999999999999999 7999999999999999999997
No 53
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=100.00 E-value=4.9e-44 Score=351.30 Aligned_cols=251 Identities=23% Similarity=0.324 Sum_probs=217.8
Q ss_pred ceeeEEEEECCEEEEEeCCCChhhhhc-eEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCE-EEecCCCceecC
Q 018957 86 AIGQVCQVIGAVVDVRFDEGLPPILTA-LEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQR-VLNTGSPITVPV 163 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~glp~i~~~-lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~-V~~tg~~l~VpV 163 (348)
.|-+|++|.||++.|+-.+|.. |++ +++.......-.+-+.....+.+.+++|++|.||...+. |.++|+++++|+
T Consensus 6 ~Y~~i~~i~Gplv~ve~~eg~~--y~E~v~i~~~~G~~r~gqVle~~~~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i~v 83 (463)
T COG1156 6 EYTTISEIKGPLIIVEGVEGAS--YGELVEIETPDGEVRRGQVLEVRGDKAVVQVFEGTSGLDTKGTTVRFTGETLKIPV 83 (463)
T ss_pred eeeeEEEeccceEEEecccCCC--cceEEEEECCCCCeeeeeEeeccCceEEEEEeecccCCCCCCceEEEeCceEEEee
Confidence 4789999999999987333321 222 333222222223333344666777999999999996655 999999999999
Q ss_pred CccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHH
Q 018957 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (348)
Q Consensus 164 G~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~ 243 (348)
++.+||||||++|+|||+.+.+.+++..+|++.|.||..|..+.++++|||++||.|+++.||||++||+++|..++.|+
T Consensus 84 s~dllGRifnG~G~PiDggp~i~~e~~~dI~g~~~NP~aR~yP~efIqTgIsaIDg~NtLvrgQKlPIFSgSGlphN~La 163 (463)
T COG1156 84 SEDLLGRIFNGSGKPIDGGPEIVPEDRLDINGAPINPYARIYPEEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELA 163 (463)
T ss_pred cHHhhhhhhcCCCCcCCCCCcCCCCcccccCCCCCCchhhhChhhHhhcCccHHhhhhhhhcccccccccCCCCchHHHH
Confidence 99999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC---C-EEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHH
Q 018957 244 MELINNVAKAHG---G-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVA 319 (348)
Q Consensus 244 ~~ii~n~a~~~~---~-~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiA 319 (348)
.+++++ |+..+ . .+||+++|-..+|...|.++|++.|++ +|+++|.+.+|+|+.+|..+|.+|+|.|
T Consensus 164 aqIarQ-A~v~~~~e~favVfaamGit~eea~fF~~~fe~tGal--------~r~vlflnlA~dp~vEri~tPr~aLt~A 234 (463)
T COG1156 164 AQIARQ-ATVDGEEEEFAVVFAAMGITHEEALFFMDEFEETGAL--------DRAVLFLNLADDPAVERIITPRMALTVA 234 (463)
T ss_pred HHHHHh-cccCCCccceeEEEeecCccHHHHHHHHHHHHhhhhh--------hhhHhhhhccCCCceeEecchhHHHHHH
Confidence 998874 44322 2 479999999999999999999999965 6999999999999999999999999999
Q ss_pred HHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 320 EHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 320 Eyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|||..++++|||+++.|||+||+|++||
T Consensus 235 EylA~e~~~hVLVilTDMTnyceALREI 262 (463)
T COG1156 235 EYLAFEKDMHVLVILTDMTNYCEALREI 262 (463)
T ss_pred HHHhccCCceEEEEEcchhHHHHHHHHH
Confidence 9999999999999999999999999987
No 54
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=100.00 E-value=7.6e-41 Score=309.93 Aligned_cols=124 Identities=47% Similarity=0.764 Sum_probs=116.5
Q ss_pred cceeeeeceeecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCC
Q 018957 212 TGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQAD 291 (348)
Q Consensus 212 TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~ 291 (348)
||||+||+|+||+||||++|||++|+|||+|++++++|+. .+++||++||||++|+.++++++++.+.+
T Consensus 1 TGir~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~---~d~~V~~~iGer~~Ev~~~~~~~~~~~~~-------- 69 (215)
T PF00006_consen 1 TGIRAIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQD---ADVVVYALIGERGREVTEFIEELKGEGAL-------- 69 (215)
T ss_dssp -SHHHHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCT---TTEEEEEEESECHHHHHHHHHHHHHTTGG--------
T ss_pred CCCceeccccccccCCEEEEEcCcccccchhhHHHHhccc---ccceeeeeccccchhHHHHHHHHhhcccc--------
Confidence 8999999999999999999999999999999999999873 47789999999999999999999888754
Q ss_pred CeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 292 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 292 ~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
+||++|++|+|+||.+|++++|+||++|||||| +|||||+++|||||||+|++|+
T Consensus 70 ~~t~vv~~t~~~~~~~r~~~~~~a~t~AEyfrd-~G~dVlli~Dsltr~a~A~rei 124 (215)
T PF00006_consen 70 ERTVVVAATSDEPPAARYRAPYTALTIAEYFRD-QGKDVLLIIDSLTRWAQAYREI 124 (215)
T ss_dssp GGEEEEEEETTS-HHHHHHHHHHHHHHHHHHHH-TTSEEEEEEETHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHhhhhccchhhhHHHhh-cCCceeehhhhhHHHHHHHHhh
Confidence 699999999999999999999999999999999 8999999999999999999986
No 55
>PRK12608 transcription termination factor Rho; Provisional
Probab=100.00 E-value=3.6e-40 Score=325.94 Aligned_cols=181 Identities=22% Similarity=0.241 Sum_probs=165.8
Q ss_pred CCCCCCCEEEecCCCceecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhccccccee-ecceeeeeceee
Q 018957 144 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQIL-VTGIKVVDLLAP 222 (348)
Q Consensus 144 ~GL~~G~~V~~tg~~l~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l-~TGIkvID~l~P 222 (348)
.+|+.|+.|..++++ ++++.+||||+|++|+|+|+.. ...++.+..|++|.+|..+++++ .+|+|+||+|+|
T Consensus 57 ~~l~~Gd~V~~~~r~---~~~~~~LgrV~~~~G~p~d~~~----~~~~~~~~~pi~p~~R~~ie~~~~~~~~RvID~l~P 129 (380)
T PRK12608 57 FNLRTGDVVEGVARP---RERYRVLVRVDSVNGTDPEKLA----RRPHFDDLTPLHPRERLRLETGSDDLSMRVVDLVAP 129 (380)
T ss_pred hCCCCCCEEEeccCC---CCChhheEEEeccCCcCchhcc----cccCcCcCCCCCccccccccccCcchhHhhhhheee
Confidence 699999999999988 9999999999999999999873 23456778889999999999888 999999999999
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCE-EEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecC
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQM 301 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~-~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~ts 301 (348)
||||||++|||++|+|||+|+.+++++..++|+++ |+|++||||++|+.+|++.+. .+|+++++
T Consensus 130 iGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~---------------~~Vvast~ 194 (380)
T PRK12608 130 IGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVK---------------GEVYASTF 194 (380)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHh---------------hhEEeecC
Confidence 99999999999999999999999998887666676 699999999999998777652 36889999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 302 NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 302 dep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|+|+..|.++.++++++||||++ +|+||+||+||+||||+|++|+
T Consensus 195 de~~~~~~~v~~~~~~~Ae~f~~-~GkdVVLvlDsltr~A~A~rei 239 (380)
T PRK12608 195 DRPPDEHIRVAELVLERAKRLVE-QGKDVVILLDSLTRLARAYNNE 239 (380)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEeCcHHHHHHHHhh
Confidence 99999999999999999999999 7999999999999999999986
No 56
>KOG1351 consensus Vacuolar H+-ATPase V1 sector, subunit B [Energy production and conversion]
Probab=100.00 E-value=5.1e-40 Score=313.11 Aligned_cols=251 Identities=26% Similarity=0.368 Sum_probs=217.6
Q ss_pred CCceeeEEEEECCEEEEEeCCCChhhhhc--eEEeecC--ceeEEEEeeeccCceEEEEeecCCCCCC-CCCEEEecCCC
Q 018957 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTA--LEVVDHS--VRLVLEVAQHMGEGVVRTIAMDGTEGLV-RGQRVLNTGSP 158 (348)
Q Consensus 84 ~~~~G~V~~V~G~vV~v~f~~glp~i~~~--lev~~~~--~~~~~EVv~~lg~~~V~~i~~~~t~GL~-~G~~V~~tg~~ 158 (348)
+-.|-+|+.|.||+|...-.. .|..... +.+.++. .+.++||. |++.| +++|++|.|+. .-+.|.+||+.
T Consensus 21 rl~y~tv~gvngplvild~vk-fp~y~eiv~ltlpdgt~r~gqvlev~---g~kav-vqvfegtsgid~k~t~~eftg~~ 95 (489)
T KOG1351|consen 21 RLTYRTVSGVNGPLVILDKVK-FPKYAEIVNLTLPDGSVRSGQVLEVS---GEKAV-VQVFEGTSGIDAKKTTVEFTGEI 95 (489)
T ss_pred ceeEeeecccCCceEEEeccc-ccchhhheEEecCCCCeecceEEEec---CCeeE-EEEeccccccccccceEEEeccc
Confidence 456899999999988543111 2222211 3333332 24577776 55655 99999999997 67999999999
Q ss_pred ceecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCc
Q 018957 159 ITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG 238 (348)
Q Consensus 159 l~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvG 238 (348)
++.||++++||||||+.|+|||.++++-++.+..|++.|.||..|..++|+++|||.+||.|+.|.||||++||+.+|.+
T Consensus 96 lr~pvsedmlgrifngsgkpid~gp~vl~edyldi~gqpinp~~riypeemiqtgis~idvmnsiargqkipifsaaglp 175 (489)
T KOG1351|consen 96 LRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLP 175 (489)
T ss_pred ccccccHHHhhhhhcCCCCccCCCCCcChHHhhccCCCcCCcccccChHHHHHhCchHHhhhhHHhccCccceeecCCCC
Confidence 99999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH--h--------hcCC--EEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHH
Q 018957 239 KTVLIMELINNVA--K--------AHGG--FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPG 306 (348)
Q Consensus 239 KT~L~~~ii~n~a--~--------~~~~--~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~ 306 (348)
++.++.+++++.. + .|.| .+||+++|-.-+....|.++|++.| ++.|+++|.+.+|+|..
T Consensus 176 hneiaaqicrqaglvk~~~k~~~d~~~dnfaivfaamgvnmetarffk~dfeeng--------sm~~v~lflnlandpti 247 (489)
T KOG1351|consen 176 HNEIAAQICRQAGLVKRPEKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENG--------SMERVCLFLNLANDPTI 247 (489)
T ss_pred hhHHHHHHHHhcCccccCCcccccccccceeeeehhhcccHHHHHHHHhhHHhcC--------CccceEEEEecCCCCch
Confidence 9999999987532 1 1222 4699999999999999999999998 45799999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 307 ARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 307 ~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
+|...|..|+|.|||+.++++||||+++.||+.||+|++|+
T Consensus 248 eriitprlalt~aeflayq~ekhvlviltdmssya~alrev 288 (489)
T KOG1351|consen 248 ERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYADALREV 288 (489)
T ss_pred hhhcchhhhHhHHHHHHHhhcCeEEEEEeccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999986
No 57
>PRK12678 transcription termination factor Rho; Provisional
Probab=100.00 E-value=1.8e-37 Score=318.05 Aligned_cols=183 Identities=20% Similarity=0.243 Sum_probs=147.7
Q ss_pred CCCCCCCEEEecCCCceecC------CccccccEEeeeCcccccCC-CCcccccccccCCCcchhhccccc-ceeeccee
Q 018957 144 EGLVRGQRVLNTGSPITVPV------GRVTLGRIMNVIGEPIDEKG-DLKTEHYLPIHREAPAFVEQATEQ-QILVTGIK 215 (348)
Q Consensus 144 ~GL~~G~~V~~tg~~l~VpV------G~~lLGRViD~lG~PiD~~g-~i~~~~~~pi~~~~p~~~~R~~~~-e~l~TGIk 215 (348)
.+|+.||.|...-++.+=.- -..-|-+|-.+.|.+.+... ...++... |++|++|..++ +++.||+|
T Consensus 331 ~~Lr~Gd~v~G~vr~p~~~e~~~~r~k~~~l~~v~~vNg~~~e~~~~r~~F~~Lt-----p~~P~~R~~le~e~~~~giR 405 (672)
T PRK12678 331 NGLRKGDAVTGAVRAPREGEQGNQRQKFNPLVRLDSVNGMSPEEAKKRPEFGKLT-----PLYPNERLRLETEPKKLTTR 405 (672)
T ss_pred cCCCCCCEEEEeecCCCCCccccccceeeeeeeEeeeCCCChHHhccCCCcccCC-----CCChHHhcccccCcccccce
Confidence 59999999986533221111 01245577777777665422 22233333 44599999998 99999999
Q ss_pred eeeceeecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCE-EEEEEeeccchhHHHHHHHHHHcCccccCcccCCCee
Q 018957 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKC 294 (348)
Q Consensus 216 vID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~-~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rt 294 (348)
+||+|+|||||||++|||++|+|||+|+++|+++.+++|.++ +||++||||++||.+ |+++. +.
T Consensus 406 vIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEVtd----m~rsV-----------kg 470 (672)
T PRK12678 406 VIDLIMPIGKGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEEVTD----MQRSV-----------KG 470 (672)
T ss_pred eeeeecccccCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhHHH----HHHhc-----------cc
Confidence 999999999999999999999999999999888777777765 689999999999976 43331 34
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 295 ALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 295 vvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
.||++|+|+||..|++++|+||++||||+| +|+|||||||||||||+|++++
T Consensus 471 eVVasT~D~p~~~~~~~a~~ai~~Ae~fre-~G~dVlillDSlTR~ArAyrev 522 (672)
T PRK12678 471 EVIASTFDRPPSDHTTVAELAIERAKRLVE-LGKDVVVLLDSITRLGRAYNLA 522 (672)
T ss_pred eEEEECCCCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEeCchHHHHHHHHh
Confidence 499999999999999999999999999999 8999999999999999999986
No 58
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=100.00 E-value=6.1e-35 Score=290.02 Aligned_cols=183 Identities=21% Similarity=0.258 Sum_probs=152.9
Q ss_pred CCCCCCCEEEecCCCceecCCccccccEEeeeCcccccCC-CCcccccccccCCCcchhhcccccc--eeecceeeeece
Q 018957 144 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDEKG-DLKTEHYLPIHREAPAFVEQATEQQ--ILVTGIKVVDLL 220 (348)
Q Consensus 144 ~GL~~G~~V~~tg~~l~VpVG~~lLGRViD~lG~PiD~~g-~i~~~~~~pi~~~~p~~~~R~~~~e--~l~TGIkvID~l 220 (348)
.+|+.||.|...-++.+=.--..-|-+|-.++|.+.+... ....+... |++|.+|..+++ ++.||+|+||+|
T Consensus 89 ~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~~~~~~~r~~f~~l~-----p~~p~~R~~le~~~~~~~~~rvID~l 163 (416)
T PRK09376 89 FNLRTGDTVEGKIRPPKEGERYFALLKVETVNGEDPEKARNRPLFENLT-----PLYPNERLRLETGNPEDLSTRIIDLI 163 (416)
T ss_pred cCCCCCCEEEEEeeCCCCCCCccceEEEeeeCCCCHHHhcCCCCcccCC-----CCChhhcccccCCCCcccceeeeeee
Confidence 6999999998876553322112245688888898876532 22233333 455999999987 799999999999
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCE-EEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEe
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYG 299 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~-~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~ 299 (348)
+|||||||++||||+|+|||||++++.++...+|.++ +++++||||++|+.++++++. .+||++
T Consensus 164 ~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIl---------------g~vv~s 228 (416)
T PRK09376 164 APIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVK---------------GEVVAS 228 (416)
T ss_pred cccccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhc---------------CcEEEE
Confidence 9999999999999999999999999888776656665 588999999999988777652 369999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 300 QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 300 tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|+|+||..|++++|.++++||||++ +|+|||||+|||||||+|+||+
T Consensus 229 t~d~~~~~~~~~a~~~ie~Ae~~~e-~G~dVlL~iDsItR~arAqrev 275 (416)
T PRK09376 229 TFDEPAERHVQVAEMVIEKAKRLVE-HGKDVVILLDSITRLARAYNTV 275 (416)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEEEChHHHHHHHHhh
Confidence 9999999999999999999999998 8999999999999999999986
No 59
>KOG1353 consensus F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=99.97 E-value=4.1e-32 Score=254.01 Aligned_cols=232 Identities=22% Similarity=0.303 Sum_probs=202.2
Q ss_pred CceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (348)
Q Consensus 85 ~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG 164 (348)
.+.|+|.+|.+.+..|. ||.++. +-|+++|+ .-+.+++.+++.+.|.+.+|++..-++.|+.|..|+....||++
T Consensus 19 eEtgrVLsIGdGIArV~---GL~nvQ-AeEmvEFs-sGlKgmalnle~~~vg~v~~g~d~~ikeg~~VkrTgaIvDVpvg 93 (340)
T KOG1353|consen 19 EETGRVLSIGDGIARVY---GLTNVQ-AEEMVEFS-SGLKGMALNLEGENVGVVVFGEDSLIKEGDTVKRTAAISDVPPL 93 (340)
T ss_pred hhccceEEEcCceeeee---cccccc-hHHHHhhh-ccccchhccccCCceEEEEEcCcceeccCceEEeeeeeeccCch
Confidence 34799999999999986 999987 67888886 35788999999999999999999999999999999999999999
Q ss_pred ccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHH
Q 018957 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (348)
Q Consensus 165 ~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~ 244 (348)
+.||||+.|.+|+|+|++|++...... ...|.+..+|++||+|++|+++|||||||.+|+|++.+|||.|+.
T Consensus 94 ~~LlgrvvdAlGn~idgkG~i~~~~~~--------ii~r~Sv~epmqtg~KAvdslVpigRgqrELiIgdRqTGkTsla~ 165 (340)
T KOG1353|consen 94 KALLGRVGCALGEPIDGNGKISAKERR--------IIPRASVDEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTSLAI 165 (340)
T ss_pred HHHhhhhhhhhcCeecCCCCccccccc--------cccceeeechhhhhhhHhhceeeeccCceEEEeccccCCceeeee
Confidence 999999999999999999998755433 466889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC-------CEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHH
Q 018957 245 ELINNVAKAHG-------GFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLT 317 (348)
Q Consensus 245 ~ii~n~a~~~~-------~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~t 317 (348)
+.|.|+...+. -+|||++||++.+.+..+++.|.+.+. ++++++|.+|+++.-...+..|+.-++
T Consensus 166 dTI~nqk~~N~~~~ekkKiyCvyvaigqkrStvaqlv~~l~~~~a--------~~y~ivv~atasq~gdvsayiptnvis 237 (340)
T KOG1353|consen 166 DTILNQKRGNECLDEKKKIYCVYVAIGQKRSTVAQLVQRLEEADA--------MEYSIVVAATASQAGDVSAYIPTNVIS 237 (340)
T ss_pred hhhhhhhhhcccccccceEEEEEEecccchhHHHHHHHHHHhcCC--------ceEEEEEEeecccccceeeecccceee
Confidence 99999864332 379999999999999999999999984 579999999999988888888888887
Q ss_pred HHHHhhhcCCCcEEEEEechhHHH
Q 018957 318 VAEHFRDAEGQDVLLFIDNIFRFT 341 (348)
Q Consensus 318 iAEyfrd~~G~dVLli~DslTR~A 341 (348)
| +.+ -.....+||+.+..-.
T Consensus 238 i---dgq-i~l~t~lfy~girpai 257 (340)
T KOG1353|consen 238 I---DGQ-IFLETELFYKGIRPAI 257 (340)
T ss_pred e---cch-hHHHHHHHHhccchhh
Confidence 7 444 3455556666655433
No 60
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=99.95 E-value=1.8e-27 Score=237.50 Aligned_cols=182 Identities=20% Similarity=0.271 Sum_probs=138.7
Q ss_pred CCCCCCCEEEecCCCceecCC-ccccccEEeeeCccccc-CCCCcccccccccCCCcchhhcccc-cceeecceeeeece
Q 018957 144 EGLVRGQRVLNTGSPITVPVG-RVTLGRIMNVIGEPIDE-KGDLKTEHYLPIHREAPAFVEQATE-QQILVTGIKVVDLL 220 (348)
Q Consensus 144 ~GL~~G~~V~~tg~~l~VpVG-~~lLGRViD~lG~PiD~-~g~i~~~~~~pi~~~~p~~~~R~~~-~e~l~TGIkvID~l 220 (348)
.+|+.||.|...-++..-.-- .+++ ++-...|.+.+. .+.+..++..|++ |.+|... ..+-..|+|+||++
T Consensus 89 ~~lr~gd~v~g~~R~~~~~ER~~~Ll-~v~~vn~~~~e~~~~ri~Fe~LTf~Y-----P~er~~Le~~~~~~~~R~id~~ 162 (415)
T TIGR00767 89 FNLRTGDTIEGQIRSPKEGERYFALL-KVESVNGDDPEKAKNRVLFENLTPLY-----PNERLRLETSTEDLSTRVLDLF 162 (415)
T ss_pred cCCCCCCEEEEEEeccccHhHHHHHh-CCCccCCCCccccCCCeEEEEeeecC-----CCccceeecCccccceeeeeeE
Confidence 689999999876443210000 0111 222223433322 3345556666776 3344333 24567899999999
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCC-EEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEe
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYG 299 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~-~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~ 299 (348)
+||++|||++|+|++|+|||+|+..+.++..++|.+ +++++++|||++|+.++++.+ ...||++
T Consensus 163 ~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsI---------------lg~Vvas 227 (415)
T TIGR00767 163 APIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSV---------------KGEVVAS 227 (415)
T ss_pred EEeCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHh---------------hceEEEe
Confidence 999999999999999999999999888776555555 568899999999998877764 2469999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 300 QMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 300 tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|+|+|+..|.++++.+++.||||++ +|+||+|++|++||||+|+||+
T Consensus 228 t~d~p~~~~~~va~~v~e~Ae~~~~-~GkdVVLlIDEitR~arAqrei 274 (415)
T TIGR00767 228 TFDEPASRHVQVAEMVIEKAKRLVE-HKKDVVILLDSITRLARAYNTV 274 (415)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHH-cCCCeEEEEEChhHHHHHHHHh
Confidence 9999999999999999999999998 7999999999999999999986
No 61
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.94 E-value=4.2e-27 Score=222.58 Aligned_cols=119 Identities=27% Similarity=0.446 Sum_probs=107.2
Q ss_pred ceeeeeceeecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCE-EEEEEeeccchhHHHHHHHHHHcCccccCcccCC
Q 018957 213 GIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAGVGERTREGNDLYREMIESGVIKLGDKQAD 291 (348)
Q Consensus 213 GIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~-~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~ 291 (348)
..|+||+|+|+++|||++|||++|+|||||+.+++++....|.++ ++++++|||++|+.++++++
T Consensus 3 ~~~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I-------------- 68 (249)
T cd01128 3 STRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV-------------- 68 (249)
T ss_pred chhheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh--------------
Confidence 359999999999999999999999999999998887664444455 46677999999998877765
Q ss_pred CeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 292 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 292 ~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
++++|++++|+|+..|+++++.++++||||++ +|+||++|+|+++|||+|++|+
T Consensus 69 -~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~-~G~~vll~iDei~r~a~a~~ev 122 (249)
T cd01128 69 -KGEVIASTFDEPPERHVQVAEMVLEKAKRLVE-HGKDVVILLDSITRLARAYNTV 122 (249)
T ss_pred -ccEEEEecCCCCHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECHHHhhhhhhhc
Confidence 47899999999999999999999999999998 7999999999999999999987
No 62
>COG1158 Rho Transcription termination factor [Transcription]
Probab=99.94 E-value=4.4e-26 Score=220.75 Aligned_cols=183 Identities=22% Similarity=0.303 Sum_probs=148.6
Q ss_pred CCCCCCCEEEecCCCceecCCccccccEEeeeCccccc-CCCCcccccccccCCCcchhhcccccce-e--ecceeeeec
Q 018957 144 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDE-KGDLKTEHYLPIHREAPAFVEQATEQQI-L--VTGIKVVDL 219 (348)
Q Consensus 144 ~GL~~G~~V~~tg~~l~VpVG~~lLGRViD~lG~PiD~-~g~i~~~~~~pi~~~~p~~~~R~~~~e~-l--~TGIkvID~ 219 (348)
.+|+.||.|...-++.+=.--..-|=||--++|++.+. +..+..+..+|++ |.+|...+.. - .-.-|+||+
T Consensus 92 f~LrtGD~v~G~vR~Pke~Ery~aLl~ve~vN~~~pe~~~~R~~F~~LTPly-----P~erl~LE~~~~~~~ls~RviDL 166 (422)
T COG1158 92 FNLRTGDTVEGKVRPPKEGERYFALLKVEAVNGDDPEKAKNRVLFENLTPLY-----PNERLKLERENGSTDLSTRVIDL 166 (422)
T ss_pred ccCccCCEEeeeecCCCcccceeeeEEEeecCCCCHHHhhccCCcccCCCCC-----CcceeeeecCCCcccchhHHHhh
Confidence 58999999988765554333333344777778887764 2334456678888 4555443311 1 123499999
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEE-EEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEE
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVY 298 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~-V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~ 298 (348)
+.|||||||.+|++|+.+|||+|++++++.++.+|+++. ++.+|+||++||+| |+++. +..||+
T Consensus 167 ~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTd----mqrsV-----------~geVia 231 (422)
T COG1158 167 ISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTD----MQRSV-----------KGEVVA 231 (422)
T ss_pred hcccCCCceeeEecCCCCCchHHHHHHHHHHhcCCCceEEEEEEecCCchHHHH----HHHhh-----------cceEEe
Confidence 999999999999999999999999999999999999975 77899999999977 66664 477999
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 299 GQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 299 ~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
+|.|+||..|..++...+.-|.++.+ +||||++++|||||+|+|||.+
T Consensus 232 STFDepp~~HvqVAE~viEkAKRlVE-~~kDVVILLDSITRLaRAYN~v 279 (422)
T COG1158 232 STFDEPPSRHVQVAEMVIEKAKRLVE-HGKDVVILLDSITRLARAYNTV 279 (422)
T ss_pred ecCCCcchhhHHHHHHHHHHHHHHHH-cCCcEEEEehhHHHHHHHhccc
Confidence 99999999999999999999999998 8999999999999999999975
No 63
>PF11421 Synthase_beta: ATP synthase F1 beta subunit; InterPro: IPR020971 F-type ATPases have 2 components, CF1 - the catalytic core - and CF0 - the membrane proton channel. CF1 has five subunits: alpha3, beta3, gamma1, delta1, epsilon1. CF0 has three main subunits: a, b and c. This entry represents the beta subunit of the F1 component. The NMR solution structure of the protein in SDS micelles was found to contain two helices, an N-terminal amphipathic alpha-helix and a C-terminal alpha-helix separated by a large unstructured internal domain. The N-terminal alpha-helix is the Tom20 receptor binding site whereas the C-terminal alpha-helix is located upstream of the mitochondrial processing peptidase cleavage site [].; GO: 0005524 ATP binding, 0016887 ATPase activity, 0006200 ATP catabolic process, 0006754 ATP biosynthetic process, 0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); PDB: 1PYV_A.
Probab=98.94 E-value=4.7e-10 Score=79.80 Aligned_cols=47 Identities=77% Similarity=0.924 Sum_probs=35.6
Q ss_pred ChhhhHhHHHhhhhcccCCCCCCCCCCCcC--CCcccccCCchhhhhhh
Q 018957 1 MASRRLLSSLLRSSVRRSPSKSSLSNSSVF--SPAATRRASPYGHLLSR 47 (348)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 47 (348)
||+||+|++|+|+++|++.+++.+.++++. ++.+.+|++|+||+|+|
T Consensus 1 MASRR~lSSlLRSssrr~~sks~l~~~~pr~~sp~p~~R~SP~gyLLnR 49 (49)
T PF11421_consen 1 MASRRLLSSLLRSSSRRSASKSPLSNSSPRLPSPSPASRASPYGYLLNR 49 (49)
T ss_dssp ---SHHHHHHHHHHHTTSSSST-GGGGTTTTSTTT-STT-SHHHHHHHH
T ss_pred CchHHHHHHHHHHHhcccccccccccCCCCCCCccccCCCCccchhccC
Confidence 999999999999999999998888777663 34457899999999987
No 64
>PF02874 ATP-synt_ab_N: ATP synthase alpha/beta family, beta-barrel domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR004100 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the N-terminal domain, which forms a closed beta-barrel with Greek-key topology. ; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015992 proton transport, 0046034 ATP metabolic process, 0016469 proton-transporting two-sector ATPase complex; PDB: 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B 1E79_B 1E1R_C 2XND_C ....
Probab=98.67 E-value=6.2e-08 Score=73.77 Aligned_cols=66 Identities=44% Similarity=0.569 Sum_probs=52.0
Q ss_pred EEEEECCEEEEEeCCC-ChhhhhceEEe--ecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecC
Q 018957 90 VCQVIGAVVDVRFDEG-LPPILTALEVV--DHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTG 156 (348)
Q Consensus 90 V~~V~G~vV~v~f~~g-lp~i~~~lev~--~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg 156 (348)
|++|.|++++++|..+ +|.+++.+++. ++. ...++.+.+++++.+++|+|++++||++|++|.+||
T Consensus 1 V~~v~G~vv~v~~~~~~~~g~~~~~~~~~~~~~-~~~~~~Vv~~~~~~v~~~~~~~t~Gl~~G~~V~~tG 69 (69)
T PF02874_consen 1 VTQVVGPVVEVEFGPGVLPGIGEAVEVELVDFG-NGVLGEVVGLDEDEVRLQVFGSTDGLSRGTEVRFTG 69 (69)
T ss_dssp EEEEECTEEEEECSEEEEEETTTEEEEEEEEET-TEEEEEEEEEETTEEEEEESSSGTTSBTTCEEEEEE
T ss_pred CccccceEEEEEcCCCCCCCccEEEEEecccce-eeeeeeecccCccEEEEEEecCCCCCCCCCEEEcCc
Confidence 7899999999987643 46666555544 333 445666667799999999999999999999999986
No 65
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.37 E-value=7.2e-06 Score=69.31 Aligned_cols=100 Identities=30% Similarity=0.477 Sum_probs=69.9
Q ss_pred eEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGAR 308 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r 308 (348)
++|+|++|+|||+++.+++...+. ++..++|....+...+..+.+..+...+ ..++..++....+......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 72 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEELTERLIGESLKG--------ALDNLIIVFATADDPAAAR 72 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcchHHHHHHHhhhhhcc--------ccccEEEEEcCCCCCcHHH
Confidence 579999999999999999887654 4567788888888777655443343332 2245566666665554444
Q ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhh
Q 018957 309 ARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVS 344 (348)
Q Consensus 309 ~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~ 344 (348)
.. .+++|+.. ..+..++++|+++.+.+..
T Consensus 73 ~~------~~~~~~~~-~~~~~~lviDe~~~~~~~~ 101 (165)
T cd01120 73 LL------SKAERLRE-RGGDDLIILDELTRLVRAL 101 (165)
T ss_pred HH------HHHHHHHh-CCCCEEEEEEcHHHHHHHH
Confidence 33 55677777 5777899999999887653
No 66
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=98.22 E-value=8.9e-06 Score=76.80 Aligned_cols=129 Identities=20% Similarity=0.166 Sum_probs=86.4
Q ss_pred ceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCcccc
Q 018957 208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKL 285 (348)
Q Consensus 208 e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~ 285 (348)
+.+.|||.-+|-++- +-+|.-++|.|++|+|||+++.+.+.+.++ ++.-|+|+..-|...++.+.+.. .|.- +
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~-~ge~vlyvs~~e~~~~l~~~~~~---~g~d-~ 77 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAR-EGEPVLYVSTEESPEELLENARS---FGWD-L 77 (260)
T ss_pred ccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHh-cCCcEEEEEecCCHHHHHHHHHH---cCCC-H
Confidence 567899999999999 889999999999999999999999998876 46789999999999998765543 2210 0
Q ss_pred Ccc-cCCCeeEEEEecCCCCHH---H--HHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhh
Q 018957 286 GDK-QADSKCALVYGQMNEPPG---A--RARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQV 343 (348)
Q Consensus 286 ~~~-~~~~rtvvV~~tsdep~~---~--r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A 343 (348)
... +...-.++-..+...+.. . -.....+.-.+-+.+.+ .+ ...+++||++.+...
T Consensus 78 ~~~~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~-~~-~~~~ViDsi~~~~~~ 139 (260)
T COG0467 78 EVYIEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEK-EG-ADRVVIDSITELTLY 139 (260)
T ss_pred HHHhhcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHH-hC-CCEEEEeCCchHhhh
Confidence 000 000111222222111110 0 12334456667777777 45 677889999976543
No 67
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.19 E-value=1.1e-05 Score=73.67 Aligned_cols=52 Identities=31% Similarity=0.426 Sum_probs=43.3
Q ss_pred eecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEE
Q 018957 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG 262 (348)
Q Consensus 210 l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~ 262 (348)
+.|||..+|-++. +.+|.=+.|+|++|+|||+++.+++.+.++. +.-++|.-
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~-g~~v~yi~ 54 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ-GKKVAYID 54 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEE
Confidence 4799999999996 7889999999999999999999999887643 34555653
No 68
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=98.08 E-value=7.3e-06 Score=75.45 Aligned_cols=124 Identities=21% Similarity=0.245 Sum_probs=75.1
Q ss_pred eecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCc
Q 018957 210 LVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGD 287 (348)
Q Consensus 210 l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~ 287 (348)
+.|||.-+|-++ -+-+|.-++|.|++|+|||+|+.+++.+.+++.+.-++|+..-|..+++ +++|...|. ++.+
T Consensus 1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l---~~~~~s~g~-d~~~ 76 (226)
T PF06745_consen 1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEEL---IENMKSFGW-DLEE 76 (226)
T ss_dssp E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHH---HHHHHTTTS--HHH
T ss_pred CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHH---HHHHHHcCC-cHHH
Confidence 369999999999 7889999999999999999999999988766436788999998877665 455655552 1100
Q ss_pred ccCCCeeEEEEecCCCCHH-HHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHH
Q 018957 288 KQADSKCALVYGQMNEPPG-ARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF 340 (348)
Q Consensus 288 ~~~~~rtvvV~~tsdep~~-~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~ 340 (348)
.....+ ..+.....+... ...-.-...-.+.+.+.+ .+. -.+++||++-+
T Consensus 77 ~~~~g~-l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~-~~~-~~vVIDsls~l 127 (226)
T PF06745_consen 77 YEDSGK-LKIIDAFPERIGWSPNDLEELLSKIREAIEE-LKP-DRVVIDSLSAL 127 (226)
T ss_dssp HHHTTS-EEEEESSGGGST-TSCCHHHHHHHHHHHHHH-HTS-SEEEEETHHHH
T ss_pred HhhcCC-EEEEecccccccccccCHHHHHHHHHHHHHh-cCC-CEEEEECHHHH
Confidence 000112 333332222110 001111123445555565 344 58889999988
No 69
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.97 E-value=7e-05 Score=68.90 Aligned_cols=121 Identities=21% Similarity=0.207 Sum_probs=70.8
Q ss_pred eecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhc-----CCEEEEEEeeccchhHHHHHHHHHHcCc
Q 018957 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAH-----GGFSVFAGVGERTREGNDLYREMIESGV 282 (348)
Q Consensus 210 l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~-----~~~~V~~~IGER~rEv~~~~~e~~~~~v 282 (348)
+.||++.+|-++. +.+|.-..|.|++|+|||+|+.+++.+..... ..-++|.-..+ .-...++.+-++..+.
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~-~~~~~rl~~~~~~~~~ 79 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG-TFRPERLVQIAERFGL 79 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC-CcCHHHHHHHHHHhcc
Confidence 4699999999987 88999999999999999999999987643221 24566665444 2122333333333331
Q ss_pred cccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957 283 IKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (348)
Q Consensus 283 ~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A 341 (348)
. .+..+++..++-. .+ .+.....+ ..+=+++.+ .++--|+++||++.+.
T Consensus 80 ~---~~~~~~~i~~~~~-~~---~~~l~~~l--~~l~~~l~~-~~~~~liVIDSis~~~ 128 (235)
T cd01123 80 D---PEEVLDNIYVARA-YN---SDHQLQLL--EELEAILIE-SSRIKLVIVDSVTALF 128 (235)
T ss_pred C---hHhHhcCEEEEec-CC---HHHHHHHH--HHHHHHHhh-cCCeeEEEEeCcHHHH
Confidence 1 1123344333322 11 11211111 112234443 3377799999999764
No 70
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.95 E-value=1.1e-05 Score=65.05 Aligned_cols=93 Identities=23% Similarity=0.189 Sum_probs=54.8
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCC
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEP 304 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep 304 (348)
+++.+.|+|++|+|||+++..++.+..+. ...++....+...+....... ......+..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~ 59 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPP--GGGVIYIDGEDILEEVLDQLL-------------------LIIVGGKKA 59 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCC--CCCEEEECCEEccccCHHHHH-------------------hhhhhccCC
Confidence 47899999999999999999988765321 123444444444433221111 000111222
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhh
Q 018957 305 PGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQV 343 (348)
Q Consensus 305 ~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A 343 (348)
...+.......++.|++.. ..++++|++.++...
T Consensus 60 ~~~~~~~~~~~~~~~~~~~-----~~viiiDei~~~~~~ 93 (148)
T smart00382 60 SGSGELRLRLALALARKLK-----PDVLILDEITSLLDA 93 (148)
T ss_pred CCCHHHHHHHHHHHHHhcC-----CCEEEEECCcccCCH
Confidence 3444555556666666544 578999999887654
No 71
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.94 E-value=8.5e-05 Score=70.70 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=47.1
Q ss_pred eecceeeeecee----------------ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccch
Q 018957 210 LVTGIKVVDLLA----------------PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR 268 (348)
Q Consensus 210 l~TGIkvID~l~----------------PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~r 268 (348)
+.|||+-+|-++ =+-+|.-+.|.|++|+|||+++.+++.+.++. +.-++|+..-|..+
T Consensus 4 ~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee~~~ 77 (259)
T TIGR03878 4 VPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVESPAN 77 (259)
T ss_pred ccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecCCch
Confidence 469999999986 35699999999999999999999999887653 55677777655443
No 72
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.91 E-value=4.4e-05 Score=73.99 Aligned_cols=124 Identities=18% Similarity=0.196 Sum_probs=76.5
Q ss_pred cceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhh-----cCCEEEEEEeec--cchhHHHHHHHH
Q 018957 207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGE--RTREGNDLYREM 277 (348)
Q Consensus 207 ~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~-----~~~~~V~~~IGE--R~rEv~~~~~e~ 277 (348)
...+.||+..+|.++- +-+|.-+.|+|++|+|||+|+.+++.+.+.. ..+.+||+-.-+ +.+.+.++ +
T Consensus 74 ~~~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~---~ 150 (310)
T TIGR02236 74 IGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQM---A 150 (310)
T ss_pred CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHH---H
Confidence 4568899999999987 7789999999999999999999998875421 124788988877 33343332 3
Q ss_pred HHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCC-cEEEEEechhHHHhh
Q 018957 278 IESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQ-DVLLFIDNIFRFTQV 343 (348)
Q Consensus 278 ~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~-dVLli~DslTR~A~A 343 (348)
...+. ..+...++..++-....+ .+.. .--.+.+++.+ .++ -=+||+||++-+-+.
T Consensus 151 ~~~gl---~~~~~~~~i~i~~~~~~~---~~~~---lld~l~~~i~~-~~~~~~lVVIDSisa~~r~ 207 (310)
T TIGR02236 151 EARGL---DPDEVLKNIYVARAYNSN---HQML---LVEKAEDLIKE-LNNPVKLLIVDSLTSHFRA 207 (310)
T ss_pred HHcCC---CHHHHhhceEEEecCCHH---HHHH---HHHHHHHHHHh-cCCCceEEEEecchHhhhH
Confidence 33332 111122343333322211 1211 12235677765 342 339999999976543
No 73
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.88 E-value=6.5e-05 Score=68.71 Aligned_cols=54 Identities=30% Similarity=0.392 Sum_probs=43.8
Q ss_pred eecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhc-----CCEEEEEEe
Q 018957 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAH-----GGFSVFAGV 263 (348)
Q Consensus 210 l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~-----~~~~V~~~I 263 (348)
+.||+..+|-++- +-+|+-..|+|++|+|||+|+.+++.+.+..+ ...++|+..
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~ 61 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT 61 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEec
Confidence 4799999999884 88999999999999999999999988765432 145566554
No 74
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.88 E-value=7.4e-05 Score=69.30 Aligned_cols=71 Identities=20% Similarity=0.233 Sum_probs=57.8
Q ss_pred cceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957 207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (348)
Q Consensus 207 ~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~ 281 (348)
.+.+.|||.-+|-++. +-+|.-+.|.|++|+|||+|+.+++.+.++ ++..++|+..-+..++ +++++.+.|
T Consensus 4 ~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e~~~~~---~~~~~~~~g 76 (234)
T PRK06067 4 KEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTENTSKS---YLKQMESVK 76 (234)
T ss_pred ceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcCCCHHH---HHHHHHHCC
Confidence 4579999999999985 679999999999999999999999877655 4567888888666544 566676666
No 75
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.81 E-value=7.6e-05 Score=73.68 Aligned_cols=110 Identities=25% Similarity=0.359 Sum_probs=75.6
Q ss_pred ceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccc
Q 018957 208 QILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIK 284 (348)
Q Consensus 208 e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~ 284 (348)
+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+.+++.+.++ .+..++|+-.=+..+. ..+...|+-
T Consensus 34 ~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~-~g~~v~yId~E~~~~~-----~~a~~lGvd- 106 (321)
T TIGR02012 34 ETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDAEHALDP-----VYARKLGVD- 106 (321)
T ss_pred ceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEcccchhHH-----HHHHHcCCC-
Confidence 578999999999998 779999999999999999999999887755 4567777744333222 123444421
Q ss_pred cCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957 285 LGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (348)
Q Consensus 285 ~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A 341 (348)
.++ +++.+.+. .++ ++.++|.+.. ++.--++|+||++-+.
T Consensus 107 ------~~~--l~v~~p~~--~eq------~l~~~~~li~-~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 107 ------IDN--LLVSQPDT--GEQ------ALEIAETLVR-SGAVDIIVVDSVAALV 146 (321)
T ss_pred ------HHH--eEEecCCC--HHH------HHHHHHHHhh-ccCCcEEEEcchhhhc
Confidence 122 23333332 333 3556666665 5777799999999765
No 76
>PRK09354 recA recombinase A; Provisional
Probab=97.80 E-value=8.4e-05 Score=74.13 Aligned_cols=111 Identities=23% Similarity=0.361 Sum_probs=79.0
Q ss_pred cceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCcc
Q 018957 207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283 (348)
Q Consensus 207 ~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~ 283 (348)
.+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+.+++.+.++ .+..++|+-.=+..+. +.+...|+-
T Consensus 38 ~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~-~G~~~~yId~E~s~~~-----~~a~~lGvd 111 (349)
T PRK09354 38 VEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-AGGTAAFIDAEHALDP-----VYAKKLGVD 111 (349)
T ss_pred CceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccchHH-----HHHHHcCCC
Confidence 4579999999999998 667888999999999999999999987654 4578888876554442 224444531
Q ss_pred ccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (348)
Q Consensus 284 ~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A 341 (348)
.++ +++.+.+. .++ ++.+++.+.. ++.--|||+||++-+.
T Consensus 112 -------ld~--lli~qp~~--~Eq------~l~i~~~li~-s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 112 -------IDN--LLVSQPDT--GEQ------ALEIADTLVR-SGAVDLIVVDSVAALV 151 (349)
T ss_pred -------HHH--eEEecCCC--HHH------HHHHHHHHhh-cCCCCEEEEeChhhhc
Confidence 123 33344332 333 3566777766 5888899999999665
No 77
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.73 E-value=0.00022 Score=65.67 Aligned_cols=68 Identities=24% Similarity=0.362 Sum_probs=52.2
Q ss_pred eecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (348)
Q Consensus 210 l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~ 281 (348)
+.|||.-+|-++. +-+|.-+.|.|++|+|||+|+.+++.+.++ .+.-++|+...+..+++ .+.+.+.+
T Consensus 2 i~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-~g~~~~~is~e~~~~~i---~~~~~~~g 71 (229)
T TIGR03881 2 LSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR-DGDPVIYVTTEESRESI---IRQAAQFG 71 (229)
T ss_pred cCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh-cCCeEEEEEccCCHHHH---HHHHHHhC
Confidence 5799999999875 779999999999999999999998876654 34567788776655444 34444444
No 78
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.71 E-value=8.2e-05 Score=73.57 Aligned_cols=111 Identities=23% Similarity=0.366 Sum_probs=77.2
Q ss_pred cceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCcc
Q 018957 207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283 (348)
Q Consensus 207 ~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~ 283 (348)
.+.+.||+..+|.++. +-+|.=+-|+|++|+|||+|+.+++.+.++ .+..++|+-.=+.... +.+...|+-
T Consensus 33 ~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~-~g~~~vyId~E~~~~~-----~~a~~lGvd 106 (325)
T cd00983 33 VEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK-LGGTVAFIDAEHALDP-----VYAKKLGVD 106 (325)
T ss_pred CceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCCEEEECccccHHH-----HHHHHcCCC
Confidence 4579999999999998 778889999999999999999999987654 4567788765333221 223444421
Q ss_pred ccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (348)
Q Consensus 284 ~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A 341 (348)
.++ +++.+.+. .++ ++.+++.+.. ++.--|+|+||++-+.
T Consensus 107 -------~~~--l~v~~p~~--~eq------~l~i~~~li~-s~~~~lIVIDSvaal~ 146 (325)
T cd00983 107 -------LDN--LLISQPDT--GEQ------ALEIADSLVR-SGAVDLIVVDSVAALV 146 (325)
T ss_pred -------HHH--heecCCCC--HHH------HHHHHHHHHh-ccCCCEEEEcchHhhc
Confidence 122 33333332 233 4566777776 5788899999999765
No 79
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.69 E-value=0.00031 Score=70.02 Aligned_cols=124 Identities=17% Similarity=0.191 Sum_probs=77.4
Q ss_pred ccceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHh--h---cCCEEEEEEeec--cchhHHHHHHH
Q 018957 206 EQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAK--A---HGGFSVFAGVGE--RTREGNDLYRE 276 (348)
Q Consensus 206 ~~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~--~---~~~~~V~~~IGE--R~rEv~~~~~e 276 (348)
....+.||++.+|-++- +-+|.=.-|+|++|+|||+|+.+++.+.+. . .+..++|+-.-+ +.+.+.++.+.
T Consensus 104 ~~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~ 183 (344)
T PLN03187 104 SVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAER 183 (344)
T ss_pred cCceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 45679999999999987 668899999999999999999999866532 1 124678887766 45555444333
Q ss_pred HHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhh
Q 018957 277 MIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQV 343 (348)
Q Consensus 277 ~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A 343 (348)
| ++ ..++.+++ +.+....+ ...+.... ..+.+.+.+ ++-=|||+||++-+.++
T Consensus 184 ~---g~---d~~~~l~~--I~~~~~~~-~e~~~~~l---~~l~~~i~~--~~~~LvVIDSital~r~ 236 (344)
T PLN03187 184 F---GM---DADAVLDN--IIYARAYT-YEHQYNLL---LGLAAKMAE--EPFRLLIVDSVIALFRV 236 (344)
T ss_pred c---CC---ChhhhcCe--EEEecCCC-HHHHHHHH---HHHHHHHHh--cCCCEEEEeCcHHhhhc
Confidence 2 32 11123344 33333332 22222211 233344544 34458899999976554
No 80
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.69 E-value=0.0008 Score=63.39 Aligned_cols=67 Identities=22% Similarity=0.226 Sum_probs=52.8
Q ss_pred cceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHH
Q 018957 207 QQILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDL 273 (348)
Q Consensus 207 ~e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~ 273 (348)
++-+.||+..+|-++ -+.+|.-..|.|++|+|||+++.+++.+.++.++.-++|.-.-+...+....
T Consensus 10 ~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r 77 (271)
T cd01122 10 NEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARR 77 (271)
T ss_pred ccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHH
Confidence 457789999999975 4778999999999999999999999988766545566677666666555443
No 81
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.67 E-value=0.00028 Score=73.12 Aligned_cols=72 Identities=21% Similarity=0.327 Sum_probs=57.5
Q ss_pred ccceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957 206 EQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (348)
Q Consensus 206 ~~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~ 281 (348)
..+.+.|||.-+|-++. +-+|.-+.|.|++|+|||+|+.+++.+.++ ++.-++|+..-|..+++ ++.+...|
T Consensus 251 ~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~-~g~~~~yis~e~~~~~i---~~~~~~~g 324 (509)
T PRK09302 251 SNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACR-RGERCLLFAFEESRAQL---IRNARSWG 324 (509)
T ss_pred ccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecCCHHHH---HHHHHHcC
Confidence 46678999999999986 889999999999999999999999987765 45677888776665544 44555444
No 82
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.67 E-value=0.0003 Score=64.66 Aligned_cols=57 Identities=30% Similarity=0.490 Sum_probs=47.5
Q ss_pred cceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEee
Q 018957 207 QQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG 264 (348)
Q Consensus 207 ~e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IG 264 (348)
++.+.||+.-+|-++ -+-+|.-..|.|++|+|||+++.+++.+.++. +.-++|+-.-
T Consensus 2 ~~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~-~~~v~yi~~e 60 (225)
T PRK09361 2 DERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN-GKKVIYIDTE 60 (225)
T ss_pred CccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEECC
Confidence 467899999999999 57789999999999999999999999887653 4556676543
No 83
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.58 E-value=0.00036 Score=72.18 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=60.1
Q ss_pred ccceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957 206 EQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (348)
Q Consensus 206 ~~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~ 281 (348)
..+.+.|||.-+|-++- +.+|.-++|.|++|+|||+|+.+++.+.++ ++.-++|+.--|..+++ ++.+..-|
T Consensus 241 ~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~-~ge~~~y~s~eEs~~~i---~~~~~~lg 314 (484)
T TIGR02655 241 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA-NKERAILFAYEESRAQL---LRNAYSWG 314 (484)
T ss_pred cccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeeCCHHHH---HHHHHHcC
Confidence 56789999999999884 789999999999999999999999988765 46788999888876665 45566655
No 84
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.53 E-value=0.00055 Score=67.28 Aligned_cols=126 Identities=17% Similarity=0.133 Sum_probs=76.2
Q ss_pred cccccceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhh-----cCCEEEEEEeec--cchhHHHH
Q 018957 203 QATEQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGE--RTREGNDL 273 (348)
Q Consensus 203 R~~~~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~-----~~~~~V~~~IGE--R~rEv~~~ 273 (348)
+......+.||++.+|-++- +.+|.=..|+|++|+|||+|+.+++.+.... .+.-++|+-.-+ +.+.+.++
T Consensus 71 ~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~ 150 (313)
T TIGR02238 71 KRKKVLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAI 150 (313)
T ss_pred hhccCceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHH
Confidence 33445679999999999976 7789999999999999999999988654311 135678887655 24444433
Q ss_pred HHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHh
Q 018957 274 YREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (348)
Q Consensus 274 ~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~ 342 (348)
. .+.++ ..+..+++ +.+ ..... .++.... -..+.+.+.+ ++-=|||+||++-+.+
T Consensus 151 a---~~~g~---d~~~~l~~-i~~-~~~~~--~e~~~~~--l~~l~~~i~~--~~~~LvVIDSisal~r 205 (313)
T TIGR02238 151 A---ERFGV---DPDAVLDN-ILY-ARAYT--SEHQMEL--LDYLAAKFSE--EPFRLLIVDSIMALFR 205 (313)
T ss_pred H---HHcCC---ChHHhcCc-EEE-ecCCC--HHHHHHH--HHHHHHHhhc--cCCCEEEEEcchHhhh
Confidence 3 33332 11123344 333 22222 2222211 1234455554 3445799999996644
No 85
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.53 E-value=0.00016 Score=67.55 Aligned_cols=69 Identities=23% Similarity=0.339 Sum_probs=56.2
Q ss_pred eeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957 209 ILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (348)
Q Consensus 209 ~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~ 281 (348)
-+.|||.-+|-++. +-+|.-++|.|++|+|||+|+.+++.+.++ .+..++|+...|..+++ ++.|.+.|
T Consensus 2 ri~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~-~ge~~lyvs~ee~~~~i---~~~~~~~g 72 (237)
T TIGR03877 2 RVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGIYVALEEHPVQV---RRNMAQFG 72 (237)
T ss_pred ccccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcEEEEEeeCCHHHH---HHHHHHhC
Confidence 36899999999875 779999999999999999999999887664 46789999998876665 44455544
No 86
>PRK04328 hypothetical protein; Provisional
Probab=97.49 E-value=0.0002 Score=67.66 Aligned_cols=70 Identities=24% Similarity=0.325 Sum_probs=57.4
Q ss_pred ceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957 208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (348)
Q Consensus 208 e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~ 281 (348)
+.+.|||.-+|-++. +-+|.-++|.|++|+|||+|+.+++.+.++ .+.-++|+...|..+++ ++.+.+.|
T Consensus 3 ~rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~-~ge~~lyis~ee~~~~i---~~~~~~~g 74 (249)
T PRK04328 3 KRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ-MGEPGVYVALEEHPVQV---RRNMRQFG 74 (249)
T ss_pred ceecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHh-cCCcEEEEEeeCCHHHH---HHHHHHcC
Confidence 357899999999986 559999999999999999999999887654 36789999999988775 44555544
No 87
>PTZ00035 Rad51 protein; Provisional
Probab=97.49 E-value=0.00071 Score=67.12 Aligned_cols=127 Identities=17% Similarity=0.175 Sum_probs=74.9
Q ss_pred hcccccceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhh-----cCCEEEEEEeec--cchhHHH
Q 018957 202 EQATEQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGE--RTREGND 272 (348)
Q Consensus 202 ~R~~~~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~-----~~~~~V~~~IGE--R~rEv~~ 272 (348)
++......+.||++.+|-++- +-+|.-..|+|++|+|||+|+.+++.+.... .+.-++|+-.-+ +.+.+.+
T Consensus 92 ~~~~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ 171 (337)
T PTZ00035 92 EARKNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQ 171 (337)
T ss_pred HhhccCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHH
Confidence 344445789999999999985 6789999999999999999999887654310 234566765433 2333433
Q ss_pred HHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHh
Q 018957 273 LYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (348)
Q Consensus 273 ~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~ 342 (348)
+ +++.++. .+..+++ +. +.....+ ....... ..+.+.+.+ ++--|||+||++-+.+
T Consensus 172 i---a~~~g~~---~~~~l~n-I~-~~~~~~~-e~~~~~l---~~~~~~l~~--~~~~lvVIDSital~r 227 (337)
T PTZ00035 172 I---AERFGLD---PEDVLDN-IA-YARAYNH-EHQMQLL---SQAAAKMAE--ERFALLIVDSATALFR 227 (337)
T ss_pred H---HHHhCCC---hHhHhhc-eE-EEccCCH-HHHHHHH---HHHHHHhhc--cCccEEEEECcHHhhh
Confidence 3 3333421 1122344 22 2332221 2222111 123344443 5667999999997544
No 88
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.43 E-value=0.00093 Score=65.24 Aligned_cols=124 Identities=17% Similarity=0.177 Sum_probs=73.8
Q ss_pred cceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhh-----cCCEEEEEEeec--cchhHHHHHHHH
Q 018957 207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGE--RTREGNDLYREM 277 (348)
Q Consensus 207 ~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~-----~~~~~V~~~IGE--R~rEv~~~~~e~ 277 (348)
...+.||+.-+|-++. +-+|.-..|+|++|+|||+++.+++.+.+.. .+..++|+-.-+ +.+.+. +.+
T Consensus 81 ~~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~---~~~ 157 (317)
T PRK04301 81 VGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE---QMA 157 (317)
T ss_pred CCccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH---HHH
Confidence 3568899999999876 7789999999999999999999999775431 124678888766 233333 333
Q ss_pred HHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhh
Q 018957 278 IESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQV 343 (348)
Q Consensus 278 ~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A 343 (348)
...+. ..+..+++ +.++ .... ...+.. .--.+.+.+.+ ..+-=|||+||++-+-++
T Consensus 158 ~~~g~---~~~~~l~~-i~~~-~~~~-~~~~~~---~~~~l~~~i~~-~~~~~lvVIDSisa~~~~ 213 (317)
T PRK04301 158 EALGL---DPDEVLDN-IHVA-RAYN-SDHQML---LAEKAEELIKE-GENIKLVIVDSLTAHFRA 213 (317)
T ss_pred HHcCC---ChHhhhcc-EEEE-eCCC-HHHHHH---HHHHHHHHHhc-cCceeEEEEECchHHhhh
Confidence 33331 11123344 2232 2221 222221 11233333433 133349999999987544
No 89
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.38 E-value=0.002 Score=58.41 Aligned_cols=42 Identities=31% Similarity=0.461 Sum_probs=34.7
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeec
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGE 265 (348)
+-+|+-+.|.|++|+|||+++.+++.+.++ ++.-++|+-.-+
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~-~g~~v~yi~~e~ 50 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAAR-QGKKVVYIDTEG 50 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCC
Confidence 568999999999999999999999988765 345678877754
No 90
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.35 E-value=0.0021 Score=59.12 Aligned_cols=65 Identities=23% Similarity=0.351 Sum_probs=49.4
Q ss_pred ceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957 213 GIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (348)
Q Consensus 213 GIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~ 281 (348)
||+-+|-++ -+-+|.-+.|.|++|+|||+++.+++.+.++. +.-++|+-.-+..+++ .+.+...+
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~~~l---~~~~~~~~ 67 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEEREERI---LGYAKSKG 67 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHH---HHHHHHcC
Confidence 566677765 35589999999999999999999999876653 5678888888876555 44555555
No 91
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.33 E-value=0.00035 Score=72.32 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=57.6
Q ss_pred eeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957 209 ILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (348)
Q Consensus 209 ~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~ 281 (348)
.+.|||.-+|-++. +-+|.-.+|-|++|+|||+|+.+++.+.+++.+.-++|+..-|..+++ ++.+.+.|
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l---~~~~~~~G 73 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDI---IKNARSFG 73 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHH---HHHHHHcC
Confidence 46899999999987 779999999999999999999999887665446789999998887765 44455444
No 92
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.29 E-value=0.0011 Score=66.07 Aligned_cols=123 Identities=15% Similarity=0.193 Sum_probs=75.0
Q ss_pred cceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhh-----cCCEEEEEEeec--cchhHHHHHHHH
Q 018957 207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGE--RTREGNDLYREM 277 (348)
Q Consensus 207 ~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~-----~~~~~V~~~IGE--R~rEv~~~~~e~ 277 (348)
...+.||++.+|-++. +-+|.=.-|+|++|+|||+|+.+++.+.... ....++|+-.-+ +.+.+.++.+.|
T Consensus 102 ~~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~ 181 (342)
T PLN03186 102 IIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERF 181 (342)
T ss_pred cceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHc
Confidence 4579999999999876 6788899999999999999999998765321 123678887766 444454443332
Q ss_pred HHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhh
Q 018957 278 IESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQV 343 (348)
Q Consensus 278 ~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A 343 (348)
++ ..+..+++- .++...+ ...+.... ..+++++.+ ++=-|||+||++-+.+.
T Consensus 182 ---~~---~~~~~l~~i-~~~~~~~--~e~~~~ll---~~~~~~~~~--~~~~LIVIDSI~alfr~ 233 (342)
T PLN03186 182 ---GL---NGADVLENV-AYARAYN--TDHQSELL---LEAASMMAE--TRFALMIVDSATALYRT 233 (342)
T ss_pred ---CC---Chhhhccce-EEEecCC--HHHHHHHH---HHHHHHhhc--cCCCEEEEeCcHHHHHH
Confidence 31 111233442 3332221 22222221 123344443 45568999999976543
No 93
>PRK05973 replicative DNA helicase; Provisional
Probab=97.27 E-value=0.0031 Score=59.83 Aligned_cols=99 Identities=19% Similarity=0.200 Sum_probs=63.6
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCC
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMN 302 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsd 302 (348)
+-+|+=+.|.|.+|+|||+++.+++.+.++ ++.-++|...-|..+++ ++.+...|+- .++... .+.+...+
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~Ge~vlyfSlEes~~~i---~~R~~s~g~d---~~~~~~--~~~~d~~d 131 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMK-SGRTGVFFTLEYTEQDV---RDRLRALGAD---RAQFAD--LFEFDTSD 131 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEEeCCHHHH---HHHHHHcCCC---hHHhcc--ceEeecCC
Confidence 779999999999999999999999988775 35567788777775555 5667777642 111111 22333333
Q ss_pred C-CHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957 303 E-PPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (348)
Q Consensus 303 e-p~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A 341 (348)
. .+. .+.+++....+. =++|+|+++-+.
T Consensus 132 ~~~~~----------~ii~~l~~~~~~-~lVVIDsLq~l~ 160 (237)
T PRK05973 132 AICAD----------YIIARLASAPRG-TLVVIDYLQLLD 160 (237)
T ss_pred CCCHH----------HHHHHHHHhhCC-CEEEEEcHHHHh
Confidence 2 111 123444442344 389999998764
No 94
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.27 E-value=0.00071 Score=73.84 Aligned_cols=111 Identities=21% Similarity=0.336 Sum_probs=77.9
Q ss_pred cceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCcc
Q 018957 207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283 (348)
Q Consensus 207 ~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~ 283 (348)
.+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+.+++.+.++ .+..++|+-.-+..+. +.+...|+-
T Consensus 38 v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~-~G~~v~yId~E~t~~~-----~~A~~lGvD 111 (790)
T PRK09519 38 ISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA-AGGVAAFIDAEHALDP-----DYAKKLGVD 111 (790)
T ss_pred CceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccchhH-----HHHHHcCCC
Confidence 3588999999999997 778999999999999999999998877654 3567888876665551 124445531
Q ss_pred ccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (348)
Q Consensus 284 ~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A 341 (348)
.++. ++.+.+ +.++ ++.+++.+-. ++.=-|||+||++-+.
T Consensus 112 -------l~~l--lv~~~~--~~E~------~l~~i~~lv~-~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 112 -------TDSL--LVSQPD--TGEQ------ALEIADMLIR-SGALDIVVIDSVAALV 151 (790)
T ss_pred -------hhHe--EEecCC--CHHH------HHHHHHHHhh-cCCCeEEEEcchhhhc
Confidence 1222 333433 2343 4555666655 5778899999999776
No 95
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.24 E-value=0.00097 Score=68.72 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=52.8
Q ss_pred cceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957 207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (348)
Q Consensus 207 ~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~ 281 (348)
.+.+.|||.-+|-++. +.+|+-++|.|++|+|||+|+.+++.+.++. +.-++|+- ||-.. .++...+.+.+
T Consensus 73 ~~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs-~EEs~--~qi~~ra~rlg 145 (454)
T TIGR00416 73 VPRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVS-GEESL--QQIKMRAIRLG 145 (454)
T ss_pred cCccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEE-CcCCH--HHHHHHHHHcC
Confidence 3468999999999984 9999999999999999999999998887653 33456664 55332 23444444544
No 96
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.21 E-value=0.002 Score=64.89 Aligned_cols=71 Identities=25% Similarity=0.440 Sum_probs=51.7
Q ss_pred cceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957 207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (348)
Q Consensus 207 ~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~ 281 (348)
.+.+.|||.-+|-++- +.+|+-++|.|++|+|||+|+.+++.+.++. +.-++|+- ||... .++...+.+.+
T Consensus 61 ~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs-~EEs~--~qi~~Ra~rlg 133 (372)
T cd01121 61 EERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVS-GEESP--EQIKLRADRLG 133 (372)
T ss_pred cCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEE-CCcCH--HHHHHHHHHcC
Confidence 3568999999999985 8899999999999999999999999887653 23455543 45332 23333444444
No 97
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.17 E-value=0.00056 Score=70.94 Aligned_cols=71 Identities=25% Similarity=0.310 Sum_probs=59.5
Q ss_pred ceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957 208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (348)
Q Consensus 208 e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~ 281 (348)
+.+.|||.-+|-++- +-+|+-++|.|++|+|||+|+++++.+.++.++.-|+|+..-|..+++.+ .+...|
T Consensus 11 ~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~---~~~~~g 83 (509)
T PRK09302 11 EKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIR---NVASFG 83 (509)
T ss_pred ccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHH---HHHHcC
Confidence 577999999999974 88999999999999999999999998877654678899999998777644 454445
No 98
>PF05729 NACHT: NACHT domain
Probab=97.12 E-value=0.0017 Score=55.35 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=30.5
Q ss_pred eeEeecCCCCcHHHHHHHHHHHHHhhcC-----CEEEEEEeeccchh
Q 018957 228 KIGLFGGAGVGKTVLIMELINNVAKAHG-----GFSVFAGVGERTRE 269 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~-----~~~V~~~IGER~rE 269 (348)
-+.|.|++|+|||+++..++....+.+. .+++|...++....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDS 48 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhc
Confidence 3679999999999999999987765432 34566666655554
No 99
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.06 E-value=0.008 Score=52.89 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=34.0
Q ss_pred eEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGND 272 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~ 272 (348)
+.|.|++|+|||+|+.+++.+.++ ++.-++|+..-|..+++.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-~g~~v~~~s~e~~~~~~~~ 44 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVTLEESPEELIE 44 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCCCHHHHHH
Confidence 578999999999999999988765 3456778887777666644
No 100
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.03 E-value=0.0019 Score=63.97 Aligned_cols=110 Identities=24% Similarity=0.351 Sum_probs=68.3
Q ss_pred cceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCcc
Q 018957 207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283 (348)
Q Consensus 207 ~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~ 283 (348)
.+.+.||+..+|..++ +-+|.=+=|+|+.++|||+|+..++.+..+ .+..|+|+-. |..=.. .-+...|+-
T Consensus 31 ~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~-~g~~~a~ID~-e~~ld~----~~a~~lGvd 104 (322)
T PF00154_consen 31 IEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-QGGICAFIDA-EHALDP----EYAESLGVD 104 (322)
T ss_dssp S-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-TT-EEEEEES-SS---H----HHHHHTT--
T ss_pred cceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhc-ccceeEEecC-cccchh----hHHHhcCcc
Confidence 4689999999999988 557888899999999999999999887533 4567888765 332221 113444531
Q ss_pred ccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHH
Q 018957 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF 340 (348)
Q Consensus 284 ~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~ 340 (348)
.+|-+ +.+.+. ++ -++.++|.+.. .|.-.++++||+...
T Consensus 105 -------l~rll--v~~P~~--~E------~al~~~e~lir-sg~~~lVVvDSv~al 143 (322)
T PF00154_consen 105 -------LDRLL--VVQPDT--GE------QALWIAEQLIR-SGAVDLVVVDSVAAL 143 (322)
T ss_dssp -------GGGEE--EEE-SS--HH------HHHHHHHHHHH-TTSESEEEEE-CTT-
T ss_pred -------ccceE--EecCCc--HH------HHHHHHHHHhh-cccccEEEEecCccc
Confidence 24533 333221 23 36788899877 587778999997643
No 101
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.98 E-value=0.0028 Score=65.21 Aligned_cols=109 Identities=19% Similarity=0.298 Sum_probs=69.3
Q ss_pred ceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCcccc
Q 018957 208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKL 285 (348)
Q Consensus 208 e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~ 285 (348)
+.+.|||.-+|-++. +.+|+-+.|.|++|+|||+|+.+++.+.++. +.-++|+-.=|..+ ++.....+.+.-
T Consensus 60 ~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees~~---qi~~ra~rlg~~-- 133 (446)
T PRK11823 60 PRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEESAS---QIKLRAERLGLP-- 133 (446)
T ss_pred CcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccccHH---HHHHHHHHcCCC--
Confidence 458899999999885 8899999999999999999999999887643 34556665333322 333444444421
Q ss_pred CcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHh
Q 018957 286 GDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (348)
Q Consensus 286 ~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~ 342 (348)
.++ +.+....+ .++ +-+.+.+ .+--++|+||++.+..
T Consensus 134 -----~~~-l~~~~e~~---l~~---------i~~~i~~--~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 134 -----SDN-LYLLAETN---LEA---------ILATIEE--EKPDLVVIDSIQTMYS 170 (446)
T ss_pred -----hhc-EEEeCCCC---HHH---------HHHHHHh--hCCCEEEEechhhhcc
Confidence 122 33332221 121 2223332 4556899999987643
No 102
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.96 E-value=0.0042 Score=61.09 Aligned_cols=122 Identities=19% Similarity=0.190 Sum_probs=70.8
Q ss_pred cceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhh--cC---CEEEEEEeec--cchhHHHHHHHH
Q 018957 207 QQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA--HG---GFSVFAGVGE--RTREGNDLYREM 277 (348)
Q Consensus 207 ~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~--~~---~~~V~~~IGE--R~rEv~~~~~e~ 277 (348)
...+.||++.+|-++. +-+|.-+.|+|++|+|||+|+.+++.+.... .+ .-++|+-.-+ +.+.+ .+-+
T Consensus 75 ~~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl---~~ia 151 (316)
T TIGR02239 75 VIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL---LAIA 151 (316)
T ss_pred cceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH---HHHH
Confidence 4569999999999876 6689999999999999999999998754321 11 3567765544 23323 2333
Q ss_pred HHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHh
Q 018957 278 IESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (348)
Q Consensus 278 ~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~ 342 (348)
++.++- .+..+++- .+....+ +....... -.+.+.+.+ ++=-|||+||++-+.+
T Consensus 152 ~~~~~~---~~~~l~~i-~~~~~~~--~~~~~~~l---~~~~~~~~~--~~~~LvVIDSI~al~r 205 (316)
T TIGR02239 152 ERYGLN---PEDVLDNV-AYARAYN--TDHQLQLL---QQAAAMMSE--SRFALLIVDSATALYR 205 (316)
T ss_pred HHcCCC---hHHhhccE-EEEecCC--hHHHHHHH---HHHHHhhcc--CCccEEEEECcHHHhh
Confidence 333421 11123332 2222221 22222211 123344443 4556899999997643
No 103
>PF13173 AAA_14: AAA domain
Probab=96.92 E-value=0.0027 Score=53.56 Aligned_cols=25 Identities=40% Similarity=0.519 Sum_probs=21.0
Q ss_pred CceeEeecCCCCcHHHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
++-+.|.|++|||||||+.+++...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3557899999999999999888653
No 104
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.84 E-value=0.0066 Score=57.09 Aligned_cols=97 Identities=16% Similarity=0.293 Sum_probs=56.9
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHH-hhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCC
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVA-KAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMN 302 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a-~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsd 302 (348)
...+.++|.|.+|+|||+|+.+.+++.. +.+-+.++++-.+..... .++++.+.+. ++... ... ...
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~-~~~~~~i~~~----l~~~~--~~~-----~~~ 84 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSL-EQLLEQILRQ----LGEPD--SSI-----SDP 84 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCC-HHHHHHHHHH----HTCC---STS-----SCC
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccc-cccccccccc----ccccc--ccc-----ccc
Confidence 4567889999999999999999886622 233467888888877665 4555554433 11110 000 111
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957 303 EPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (348)
Q Consensus 303 ep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A 341 (348)
..... ..-.+.+++++ ++.|||+||+....
T Consensus 85 ~~~~~------~~~~l~~~L~~---~~~LlVlDdv~~~~ 114 (287)
T PF00931_consen 85 KDIEE------LQDQLRELLKD---KRCLLVLDDVWDEE 114 (287)
T ss_dssp SSHHH------HHHHHHHHHCC---TSEEEEEEEE-SHH
T ss_pred ccccc------ccccchhhhcc---ccceeeeeeecccc
Confidence 11111 23334566664 49999999986544
No 105
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.80 E-value=0.004 Score=58.32 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=48.8
Q ss_pred eecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (348)
Q Consensus 210 l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~ 281 (348)
+.+++.-+|-++. +-+|..++|.|++|+|||+|+.+++.+.++ ++.-++|+...|...+. ++.+.+.|
T Consensus 6 ~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g~~~~yi~~e~~~~~~---~~~~~~~g 75 (230)
T PRK08533 6 IELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQ-NGYSVSYVSTQLTTTEF---IKQMMSLG 75 (230)
T ss_pred EEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEEeCCCCHHHH---HHHHHHhC
Confidence 4456666666664 678999999999999999999888877654 34567888877666554 44444444
No 106
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.73 E-value=0.012 Score=52.14 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=26.2
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~ 252 (348)
.+|+-..|.|++|+|||+++.+++...+.
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 38999999999999999999999988775
No 107
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.72 E-value=0.0076 Score=57.48 Aligned_cols=127 Identities=22% Similarity=0.220 Sum_probs=71.8
Q ss_pred cccceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhh-----cCCEEEEEEeeccchhHHHHHHHH
Q 018957 205 TEQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGERTREGNDLYREM 277 (348)
Q Consensus 205 ~~~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~-----~~~~~V~~~IGER~rEv~~~~~e~ 277 (348)
.-...+.||++.+|.++- +-.|+=.=|+|++|+|||.|+.+++.+..-. .+..+||.=.-- .-....+.+=.
T Consensus 15 ~~~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~-~f~~~Rl~~i~ 93 (256)
T PF08423_consen 15 KRWSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEG-TFSPERLQQIA 93 (256)
T ss_dssp HTS-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSS-SS-HHHHHHHH
T ss_pred hcCCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCC-CCCHHHHHHHh
Confidence 345789999999999983 6788888999999999999999998775311 234677774432 22222222222
Q ss_pred HHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhh
Q 018957 278 IESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQV 343 (348)
Q Consensus 278 ~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A 343 (348)
++.+ +..++.++|.. ++--.| ..+.. .... .+.+.+.+ .+-=|||+||++-+-+.
T Consensus 94 ~~~~---~~~~~~l~~I~-v~~~~~--~~~l~-~~L~--~l~~~l~~--~~ikLIVIDSIaalfr~ 148 (256)
T PF08423_consen 94 ERFG---LDPEEILDNIF-VIRVFD--LEELL-ELLE--QLPKLLSE--SKIKLIVIDSIAALFRS 148 (256)
T ss_dssp HHTT---S-HHHHHHTEE-EEE-SS--HHHHH-HHHH--HHHHHHHH--SCEEEEEEETSSHHHHH
T ss_pred hccc---cccchhhhcee-eeecCC--HHHHH-HHHH--HHHhhccc--cceEEEEecchHHHHHH
Confidence 2222 11122344433 333222 22222 2222 23344554 46679999999987653
No 108
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.47 E-value=0.02 Score=46.53 Aligned_cols=41 Identities=22% Similarity=0.385 Sum_probs=28.1
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeecc
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER 266 (348)
.+.-+.|.|++|+|||+|+..++...... ...++++-+.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~ 58 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDL 58 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhh
Confidence 46679999999999999999888765321 233444444443
No 109
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.42 E-value=0.016 Score=47.94 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=50.3
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHHHhh----cCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEec
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNVAKA----HGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQ 300 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~----~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~t 300 (348)
+++-+.|.|++|+|||+++..++.+.... +..-++++-+.... ...++++++.+.- +.+ .. .
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l----~~~--~~-~------ 68 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR-TPRDFAQEILEAL----GLP--LK-S------ 68 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS-SHHHHHHHHHHHH----T-S--SS-S------
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC-CHHHHHHHHHHHh----Ccc--cc-c------
Confidence 34557789999999999999988765321 02234555555555 5566666655442 110 01 1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHH
Q 018957 301 MNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRF 340 (348)
Q Consensus 301 sdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~ 340 (348)
.. ... ...-.+-+++.. .+.++|++|+.-.+
T Consensus 69 -~~-~~~-----~l~~~~~~~l~~--~~~~~lviDe~~~l 99 (131)
T PF13401_consen 69 -RQ-TSD-----ELRSLLIDALDR--RRVVLLVIDEADHL 99 (131)
T ss_dssp -TS--HH-----HHHHHHHHHHHH--CTEEEEEEETTHHH
T ss_pred -cC-CHH-----HHHHHHHHHHHh--cCCeEEEEeChHhc
Confidence 01 111 111344456665 33489999998876
No 110
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.26 E-value=0.022 Score=54.23 Aligned_cols=41 Identities=27% Similarity=0.348 Sum_probs=28.5
Q ss_pred eeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhH
Q 018957 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG 270 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv 270 (348)
|+.|+|++|+|||+|+..++.+..+.. -+||....+...+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f--~~I~l~t~~~n~~~ 55 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKF--DHIFLITPEYNNEY 55 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccC--CEEEEEecCCchhh
Confidence 789999999999999999987653211 24555555444333
No 111
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.22 E-value=0.022 Score=56.45 Aligned_cols=98 Identities=13% Similarity=0.147 Sum_probs=54.5
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHHhhcC-CEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCC
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHG-GFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMN 302 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~-~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsd 302 (348)
.+++.+.|.|++|+|||+++..+.++...... ...+|+-+-+... ...++.++.+.- ....... ..
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~-~~~~~~~i~~~l----~~~~~~~--------~~ 119 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT-RYAIFSEIARQL----FGHPPPS--------SG 119 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC-HHHHHHHHHHHh----cCCCCCC--------CC
Confidence 34567999999999999999988876533222 3456665544332 334455543321 0000000 00
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957 303 EPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (348)
Q Consensus 303 ep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A 341 (348)
.+. ... --.+.+++.. .++.++|++|++-.+.
T Consensus 120 ~~~-~~~-----~~~~~~~l~~-~~~~~viviDE~d~l~ 151 (394)
T PRK00411 120 LSF-DEL-----FDKIAEYLDE-RDRVLIVALDDINYLF 151 (394)
T ss_pred CCH-HHH-----HHHHHHHHHh-cCCEEEEEECCHhHhh
Confidence 011 111 1123355555 6888999999997765
No 112
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.13 E-value=0.0038 Score=55.87 Aligned_cols=38 Identities=37% Similarity=0.532 Sum_probs=26.5
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEe
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV 263 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~I 263 (348)
.++-+.|+|++|+|||+|+.+++... +..+..++|.-.
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~-~~~~~~~~y~~~ 56 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINEL-KEKGYKVVYIDF 56 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHC-T--EECCCHHCC
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHh-hhcCCcEEEEec
Confidence 46889999999999999999888754 221123455544
No 113
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=96.13 E-value=0.0062 Score=57.41 Aligned_cols=61 Identities=23% Similarity=0.261 Sum_probs=43.6
Q ss_pred eecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhH
Q 018957 210 LVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG 270 (348)
Q Consensus 210 l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv 270 (348)
+.||++.+|-++ -+.+|+=..|-|.+|+|||+++.+++.+.+..++.-++|.-.-...+|+
T Consensus 2 i~TG~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l 63 (259)
T PF03796_consen 2 IPTGFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEEL 63 (259)
T ss_dssp B-SSTHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHH
T ss_pred CCCChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHH
Confidence 579999999886 5888999999999999999999999999876543334444444344443
No 114
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.12 E-value=0.017 Score=51.93 Aligned_cols=87 Identities=18% Similarity=0.224 Sum_probs=52.4
Q ss_pred eEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeecc-chhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER-TREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGA 307 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER-~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~ 307 (348)
+.|.|++|+|||+++.+++.. .+.-++|+...+. ..|+.+-++..++.- ...-.++ |
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~d~em~~rI~~H~~~R--------~~~w~t~------E---- 59 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAFDDEMAERIARHRKRR--------PAHWRTI------E---- 59 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcCCHHHHHHHHHHHHhC--------CCCceEe------e----
Confidence 579999999999999988754 2345677777765 344544443333221 1111111 1
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhh
Q 018957 308 RARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVS 344 (348)
Q Consensus 308 r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~ 344 (348)
...-+.+.+.+..+.+ .+++|++|-|...+
T Consensus 60 ------~~~~l~~~l~~~~~~~-~VLIDclt~~~~n~ 89 (169)
T cd00544 60 ------TPRDLVSALKELDPGD-VVLIDCLTLWVTNL 89 (169)
T ss_pred ------cHHHHHHHHHhcCCCC-EEEEEcHhHHHHHh
Confidence 1234555555422444 69999999997664
No 115
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.04 E-value=0.026 Score=55.29 Aligned_cols=100 Identities=14% Similarity=0.253 Sum_probs=52.8
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHHhhcCC----E-EEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEE
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG----F-SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVY 298 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~----~-~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~ 298 (348)
.+++.+.|.|++|+|||+++..+.++......+ + .+|+-+-+ .+.-.+++.++.+.- ...+. + .
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~-~~~~~~~~~~i~~~l-~~~~~-----~----~ 106 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI-LDTLYQVLVELANQL-RGSGE-----E----V 106 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC-CCCHHHHHHHHHHHH-hhcCC-----C----C
Confidence 345779999999999999998887654321111 3 45555433 233344555544331 00000 0 0
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957 299 GQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (348)
Q Consensus 299 ~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A 341 (348)
.....+....+. .+-+++.. .++.++|++|++-.+.
T Consensus 107 ~~~~~~~~~~~~------~l~~~l~~-~~~~~vlvIDE~d~L~ 142 (365)
T TIGR02928 107 PTTGLSTSEVFR------RLYKELNE-RGDSLIIVLDEIDYLV 142 (365)
T ss_pred CCCCCCHHHHHH------HHHHHHHh-cCCeEEEEECchhhhc
Confidence 001111111111 12244444 5888999999998874
No 116
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.02 E-value=0.027 Score=54.75 Aligned_cols=115 Identities=23% Similarity=0.319 Sum_probs=71.3
Q ss_pred ccccceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEE-Eee-ccchhHHHHHHHHHH
Q 018957 204 ATEQQILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFA-GVG-ERTREGNDLYREMIE 279 (348)
Q Consensus 204 ~~~~e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~-~IG-ER~rEv~~~~~e~~~ 279 (348)
....+.+.||.+.+|-++- +-+|.-.=|||+.|+|||+|+.+++.|..+ .++.++|+ .-| -+......+-..+
T Consensus 36 ~~~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~-~g~~a~fIDtE~~l~p~r~~~l~~~~-- 112 (279)
T COG0468 36 REDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQK-PGGKAAFIDTEHALDPERAKQLGVDL-- 112 (279)
T ss_pred hhccccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhc-CCCeEEEEeCCCCCCHHHHHHHHHhh--
Confidence 3336889999999999887 336777889999999999999999987644 34466664 333 2222222211111
Q ss_pred cCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCC--cEEEEEechhHHHhh
Q 018957 280 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQ--DVLLFIDNIFRFTQV 343 (348)
Q Consensus 280 ~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~--dVLli~DslTR~A~A 343 (348)
..-+++++.+..- -++.+++++.. .+. ==|+++||++-+-++
T Consensus 113 -------------~d~l~v~~~~~~e--------~q~~i~~~~~~-~~~~~i~LvVVDSvaa~~r~ 156 (279)
T COG0468 113 -------------LDNLLVSQPDTGE--------QQLEIAEKLAR-SGAEKIDLLVVDSVAALVRA 156 (279)
T ss_pred -------------hcceeEecCCCHH--------HHHHHHHHHHH-hccCCCCEEEEecCcccchh
Confidence 1124455554422 23444444444 233 568899999876554
No 117
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.99 E-value=0.01 Score=60.29 Aligned_cols=63 Identities=22% Similarity=0.228 Sum_probs=49.9
Q ss_pred ceeecceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhH
Q 018957 208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG 270 (348)
Q Consensus 208 e~l~TGIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv 270 (348)
.-+.||++.+|-++- +.+|+=+.|-|.+|+|||+++.+++.+.+..++.-++|.-.-+...++
T Consensus 176 ~gi~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i 239 (434)
T TIGR00665 176 TGVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQL 239 (434)
T ss_pred CcccCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHH
Confidence 458899999999864 889999999999999999999999998775444444555555555554
No 118
>PRK09183 transposase/IS protein; Provisional
Probab=95.85 E-value=0.015 Score=55.51 Aligned_cols=27 Identities=41% Similarity=0.543 Sum_probs=24.3
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+.+|+.+.|+|++|+|||+|+.-+.+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 788999999999999999999877654
No 119
>PRK08181 transposase; Validated
Probab=95.85 E-value=0.016 Score=55.94 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=24.0
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
.+++.+.|+|++|+|||.|+.-+.+...
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~ 131 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALI 131 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 4788899999999999999988776543
No 120
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.84 E-value=0.0082 Score=57.30 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=25.0
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.|.+|+..||+|++|+|||||+.-++
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~ 54 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLA 54 (252)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHh
Confidence 4689999999999999999999997554
No 121
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.84 E-value=0.018 Score=53.15 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=41.0
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGND 272 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~ 272 (348)
+.+|+-+.|-|++|+|||+++.+++.+.+..++.-++|.-.-+..+++..
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHH
Confidence 67999999999999999999999998887654556677777777666643
No 122
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.81 E-value=0.088 Score=49.04 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=22.6
Q ss_pred CceeEeecCCCCcHHHHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
|.-..|+|++|+|||+|+.+++.+++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh
Confidence 45568999999999999999998776
No 123
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.80 E-value=0.15 Score=44.68 Aligned_cols=43 Identities=26% Similarity=0.262 Sum_probs=29.7
Q ss_pred eEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGND 272 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~ 272 (348)
+.+.|++|+|||+++..++...++ .+.-++++-+.-+..+..+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~-~g~~v~~i~~D~~~~~~~~ 45 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKK-KGKKVLLVAADTYRPAAIE 45 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCChHHHH
Confidence 578999999999999988876544 2334555666655444433
No 124
>PRK12377 putative replication protein; Provisional
Probab=95.75 E-value=0.032 Score=53.27 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=21.2
Q ss_pred ceeEeecCCCCcHHHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
+-+.|+|++|+|||.|+..+++...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999998877654
No 125
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.70 E-value=0.035 Score=56.23 Aligned_cols=67 Identities=18% Similarity=0.307 Sum_probs=40.4
Q ss_pred ceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCC
Q 018957 227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNE 303 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsde 303 (348)
..+.|+|++|+|||+|+..+.+.. +.++..+-.......++.++++.+.+... ..++.++++--.+.
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l~a~~~~~~~ir~ii~~~~~~~~-------~g~~~vL~IDEi~~ 103 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGAT---DAPFEALSAVTSGVKDLREVIEEARQRRS-------AGRRTILFIDEIHR 103 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecccccHHHHHHHHHHHHHhhh-------cCCceEEEEechhh
Confidence 468899999999999998776543 34555444444444455555555433210 11356777755543
No 126
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.68 E-value=0.012 Score=49.48 Aligned_cols=28 Identities=36% Similarity=0.464 Sum_probs=24.4
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
-+.+..|+.++|.|++|+|||||+..+.
T Consensus 9 sl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 9 LVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 3567889999999999999999998664
No 127
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.67 E-value=0.047 Score=55.17 Aligned_cols=45 Identities=36% Similarity=0.541 Sum_probs=34.5
Q ss_pred cceeecceeeeece-eecccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957 207 QQILVTGIKVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 207 ~e~l~TGIkvID~l-~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
.+.+..-+.++|.. ..+.+|+-++++|++|+||||++..++....
T Consensus 117 ~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 117 QSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred HHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34555555666555 3467899999999999999999999987644
No 128
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.63 E-value=0.12 Score=47.60 Aligned_cols=116 Identities=15% Similarity=0.159 Sum_probs=67.2
Q ss_pred eeeceeecccCceeEeecCCCCcHHHHHHHHHHHHHhh---------cCCE----EEEEEeecc---chhHHHHHHHHHH
Q 018957 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA---------HGGF----SVFAGVGER---TREGNDLYREMIE 279 (348)
Q Consensus 216 vID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~---------~~~~----~V~~~IGER---~rEv~~~~~e~~~ 279 (348)
.-|.-+....|...+|.|++|.||||++..+...+.-+ ...+ .||..++.. .+....|..|+++
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~ 98 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSE 98 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHH
Confidence 44556677889999999999999999988765322111 1111 366666655 3344455566655
Q ss_pred cCccccCcccCCCeeEEEEecCCCC-----HHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHh
Q 018957 280 SGVIKLGDKQADSKCALVYGQMNEP-----PGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (348)
Q Consensus 280 ~~v~~~~~~~~~~rtvvV~~tsdep-----~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~ 342 (348)
...+ + ....++..++. ||| +.++... ..++.||+.+ .|.-+++ ......+++
T Consensus 99 ~~~i-l--~~~~~~~lvll---DE~~~gt~~~~~~~l---~~~il~~l~~-~~~~~i~-~TH~~~l~~ 155 (204)
T cd03282 99 TAYI-L--DYADGDSLVLI---DELGRGTSSADGFAI---SLAILECLIK-KESTVFF-ATHFRDIAA 155 (204)
T ss_pred HHHH-H--HhcCCCcEEEe---ccccCCCCHHHHHHH---HHHHHHHHHh-cCCEEEE-ECChHHHHH
Confidence 4322 1 01224566665 665 4444332 4568899998 5665554 444444443
No 129
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.62 E-value=0.013 Score=52.88 Aligned_cols=33 Identities=30% Similarity=0.408 Sum_probs=27.5
Q ss_pred eeeeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 215 KVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 215 kvID~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.+++-.+.+.+|..++|.|++|+|||||+..+.
T Consensus 14 ~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 46 (177)
T cd03222 14 FLLVELGVVKEGEVIGIVGPNGTGKTTAVKILA 46 (177)
T ss_pred EEEccCcEECCCCEEEEECCCCChHHHHHHHHH
Confidence 344445789999999999999999999997554
No 130
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.62 E-value=0.061 Score=46.79 Aligned_cols=45 Identities=27% Similarity=0.448 Sum_probs=26.1
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeecc
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER 266 (348)
..-+.+.-+.|.|++|+|||+|+..+..+..+. ..+++..-+-..
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~-~~~~~~~~~~~~ 63 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER-GGYVISINCDDS 63 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH-T--EEEEEEETT
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCEEEEEEEecc
Confidence 455667789999999999999999988776543 344444444444
No 131
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.57 E-value=0.04 Score=56.12 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=24.6
Q ss_pred HHHHHHHhhhcCCCcEEEEEechhHHHhhhcc
Q 018957 315 GLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFI 346 (348)
Q Consensus 315 a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e 346 (348)
.+.-|+.++. .|+.++||+|.+-||=.++..
T Consensus 92 i~e~a~~~~~-~gr~tiLflDEIHRfnK~QQD 122 (436)
T COG2256 92 IIEEARKNRL-LGRRTILFLDEIHRFNKAQQD 122 (436)
T ss_pred HHHHHHHHHh-cCCceEEEEehhhhcChhhhh
Confidence 4555677787 699999999999999777654
No 132
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.51 E-value=0.16 Score=50.17 Aligned_cols=29 Identities=31% Similarity=0.303 Sum_probs=25.3
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~ 252 (348)
.+|+.+++.|++|+||||++..++...+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999998876543
No 133
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.48 E-value=0.014 Score=52.11 Aligned_cols=28 Identities=32% Similarity=0.579 Sum_probs=24.8
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|+|++|+|||||+..+.
T Consensus 12 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~ 39 (190)
T TIGR01166 12 NFAAERGEVLALLGANGAGKSTLLLHLN 39 (190)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999999997554
No 134
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.014 Score=51.85 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=25.0
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+..+|+|++|+|||||+.-+.
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~ 47 (178)
T cd03229 20 SLNIEAGEIVALLGPSGSGKSTLLRCIA 47 (178)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3688999999999999999999997654
No 135
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.47 E-value=0.014 Score=53.52 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=26.1
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+||.++|+|++|+|||||+..++.
T Consensus 22 isl~i~~G~~~~i~G~nGsGKSTLl~~l~G 51 (229)
T cd03254 22 INFSIKPGETVAIVGPTGAGKTTLINLLMR 51 (229)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999999986653
No 136
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.46 E-value=0.12 Score=42.18 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=19.1
Q ss_pred eEeecCCCCcHHHHHHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
++|.|++|+|||+++..++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999887653
No 137
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.45 E-value=0.014 Score=47.80 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=19.6
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
+++|.|++|+||||++..+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988764
No 138
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.43 E-value=0.016 Score=53.26 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=25.7
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|+.++|+|++|+|||||+.-++-
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G 48 (227)
T cd03260 19 ISLDIPKGEITALIGPSGCGKSTLLRLLNR 48 (227)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 336889999999999999999999976553
No 139
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.42 E-value=0.016 Score=52.56 Aligned_cols=29 Identities=31% Similarity=0.549 Sum_probs=25.5
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|.|++|+|||||+.-++
T Consensus 19 v~~~i~~G~~~~i~G~nGsGKSTLl~~l~ 47 (210)
T cd03269 19 ISFSVEKGEIFGLLGPNGAGKTTTIRMIL 47 (210)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 44688999999999999999999997655
No 140
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.40 E-value=0.016 Score=52.78 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=24.9
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+-+|+.++|+|++|+|||||+.-|+
T Consensus 24 s~~i~~G~~~~l~G~nGsGKSTLl~~i~ 51 (218)
T cd03255 24 SLSIEKGEFVAIVGPSGSGKSTLLNILG 51 (218)
T ss_pred EEEEcCCCEEEEEcCCCCCHHHHHHHHh
Confidence 3678899999999999999999997654
No 141
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.40 E-value=0.23 Score=45.53 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=54.1
Q ss_pred eeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHH-cCcc--ccC---cc-----c------C
Q 018957 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE-SGVI--KLG---DK-----Q------A 290 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~-~~v~--~~~---~~-----~------~ 290 (348)
-+.++|+.|+||||.+..++.........+.++.+=..|.--+..+ +.+-+ .++. ... ++ + .
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL-~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQL-KTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHH-HHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHH-HHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 4789999999999999999877654322334444333333322221 11111 1110 000 00 0 0
Q ss_pred CCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957 291 DSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (348)
Q Consensus 291 ~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A 341 (348)
.+.-+|++-|+-.++......... .+++.....-.++|++|......
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el----~~~~~~~~~~~~~LVlsa~~~~~ 128 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEEL----KKLLEALNPDEVHLVLSATMGQE 128 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHH----HHHHHHHSSSEEEEEEEGGGGGH
T ss_pred cCCCEEEEecCCcchhhHHHHHHH----HHHhhhcCCccceEEEecccChH
Confidence 112367777776655544333322 23333334567888888777654
No 142
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.38 E-value=0.017 Score=52.44 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=25.8
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|.|++|+|||||+.-++
T Consensus 19 ~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~ 48 (214)
T cd03292 19 GINISISAGEFVFLVGPSGAGKSTLLKLIY 48 (214)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344788999999999999999999997554
No 143
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.37 E-value=0.016 Score=52.46 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=25.2
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-|.
T Consensus 20 vs~~i~~G~~~~l~G~nGsGKSTLl~~l~ 48 (211)
T cd03225 20 ISLTIKKGEFVLIVGPNGSGKSTLLRLLN 48 (211)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 34678999999999999999999997554
No 144
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.37 E-value=0.084 Score=50.12 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=25.3
Q ss_pred eEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEee---ccchhHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG---ERTREGNDLYRE 276 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IG---ER~rEv~~~~~e 276 (348)
+.++||+|+|||||+.-+++.. +..+...-| ++..+...++..
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~-----~~~~~~~sg~~i~k~~dl~~il~~ 98 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANEL-----GVNFKITSGPAIEKAGDLAAILTN 98 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHC-----T--EEEEECCC--SCHHHHHHHHT
T ss_pred EEEECCCccchhHHHHHHHhcc-----CCCeEeccchhhhhHHHHHHHHHh
Confidence 6899999999999997544432 233333334 455555544433
No 145
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.35 E-value=0.017 Score=52.74 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=25.4
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+..++
T Consensus 24 isl~i~~G~~~~i~G~nGsGKSTLl~~i~ 52 (221)
T TIGR02211 24 VSLSIGKGEIVAIVGSSGSGKSTLLHLLG 52 (221)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 34788999999999999999999997654
No 146
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.34 E-value=0.016 Score=55.37 Aligned_cols=33 Identities=24% Similarity=0.571 Sum_probs=26.4
Q ss_pred eeee-eceeecccCceeEeecCCCCcHHHHHHHH
Q 018957 214 IKVV-DLLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (348)
Q Consensus 214 IkvI-D~l~PigkGQr~gIfg~~GvGKT~L~~~i 246 (348)
.+++ |.=+.+.+|+-+.|+|++|||||||+.-+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLrii 49 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLI 49 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHH
Confidence 3444 33468999999999999999999998633
No 147
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.33 E-value=0.3 Score=45.73 Aligned_cols=102 Identities=18% Similarity=0.137 Sum_probs=59.5
Q ss_pred eeeeeceeecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCC------------E-EEEEEeeccchh---HHHHHHHH
Q 018957 214 IKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG------------F-SVFAGVGERTRE---GNDLYREM 277 (348)
Q Consensus 214 IkvID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~------------~-~V~~~IGER~rE---v~~~~~e~ 277 (348)
...-|.-+.+.+|+++.|.|+.|.|||+++..+..+.-.++.+ + .||.-+|.+.+- ...|..|+
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~ 98 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVEL 98 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHH
Confidence 3456777778899999999999999999998776644322221 2 467777765431 11233444
Q ss_pred HHcCccccCcccCCCeeEEEEecCCCC-----HHHHHHHHHHHHHHHHHhhh
Q 018957 278 IESGVIKLGDKQADSKCALVYGQMNEP-----PGARARVGLTGLTVAEHFRD 324 (348)
Q Consensus 278 ~~~~v~~~~~~~~~~rtvvV~~tsdep-----~~~r~~a~~~a~tiAEyfrd 324 (348)
.+-..+ + +.+-+++.++. ||| +... ...+.++-|||.+
T Consensus 99 ~~~~~i-l--~~~~~~sLvll---DE~~~gT~~~d~---~~i~~~il~~l~~ 141 (222)
T cd03287 99 SETSHI-L--SNCTSRSLVIL---DELGRGTSTHDG---IAIAYATLHYLLE 141 (222)
T ss_pred HHHHHH-H--HhCCCCeEEEE---ccCCCCCChhhH---HHHHHHHHHHHHh
Confidence 433211 0 01224666666 443 1221 1124567899987
No 148
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.33 E-value=0.017 Score=52.75 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=24.8
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (222)
T cd03224 20 SLTVPEGEIVALLGRNGAGKTTLLKTIM 47 (222)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHh
Confidence 3688999999999999999999997554
No 149
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.32 E-value=0.016 Score=48.60 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=24.4
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|.|++|+|||||+..+.
T Consensus 5 ~~~i~~g~~~~i~G~nGsGKStLl~~l~ 32 (137)
T PF00005_consen 5 SLEIKPGEIVAIVGPNGSGKSTLLKALA 32 (137)
T ss_dssp EEEEETTSEEEEEESTTSSHHHHHHHHT
T ss_pred EEEEcCCCEEEEEccCCCccccceeeec
Confidence 3578899999999999999999997554
No 150
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.30 E-value=0.017 Score=53.48 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=25.2
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-|.
T Consensus 21 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 49 (243)
T TIGR02315 21 INLNINPGEFVAIIGPSGAGKSTLLRCIN 49 (243)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 33688999999999999999999997554
No 151
>PRK05748 replicative DNA helicase; Provisional
Probab=95.30 E-value=0.021 Score=58.39 Aligned_cols=63 Identities=19% Similarity=0.175 Sum_probs=49.1
Q ss_pred ceeecceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhH
Q 018957 208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG 270 (348)
Q Consensus 208 e~l~TGIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv 270 (348)
.-+.||+..+|-++- +.+|+=+.|-|.+|+|||+++.+++.+.+..++.-++|.-.-+...++
T Consensus 184 ~gi~TG~~~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l 247 (448)
T PRK05748 184 TGIPTGFTDLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESL 247 (448)
T ss_pred CCccCChHHHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHH
Confidence 468999999999874 788999999999999999999999998765444444555555554444
No 152
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.30 E-value=0.088 Score=47.23 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=29.1
Q ss_pred eeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchh
Q 018957 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE 269 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rE 269 (348)
++.|.|++|+|||+++..++.+. +.-++|++.++-.++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~----~~~~~~iat~~~~~~ 40 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS----GLQVLYIATAQPFDD 40 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc----CCCcEeCcCCCCChH
Confidence 68999999999999999886542 223678888876544
No 153
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.26 E-value=0.019 Score=52.36 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=25.3
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 22 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (216)
T TIGR00960 22 LNFHITKGEMVFLVGHSGAGKSTFLKLIL 50 (216)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34678999999999999999999997554
No 154
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.019 Score=52.58 Aligned_cols=30 Identities=37% Similarity=0.505 Sum_probs=26.0
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+..+|+|++|+|||||+..|+
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 47 (220)
T cd03265 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLT 47 (220)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 445788999999999999999999997554
No 155
>PRK08116 hypothetical protein; Validated
Probab=95.25 E-value=0.072 Score=51.17 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.0
Q ss_pred eEeecCCCCcHHHHHHHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
+.|.|++|+|||.|+..+++...
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~ 139 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELI 139 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999998776654
No 156
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.25 E-value=0.019 Score=51.77 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=25.4
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 16 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 45 (206)
T TIGR03608 16 DLNLTIEKGKMYAIIGESGSGKSTLLNIIG 45 (206)
T ss_pred ceEEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 344678899999999999999999997554
No 157
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.24 E-value=0.02 Score=51.78 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=25.5
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 48 (200)
T PRK13540 19 QISFHLPAGGLLHLKGSNGAGKTTLLKLIA 48 (200)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 344678999999999999999999997543
No 158
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.23 E-value=0.019 Score=51.84 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=24.5
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~i 246 (348)
=+.+.+|++++|.|++|+|||||+..+
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 368999999999999999999999755
No 159
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.22 E-value=0.019 Score=53.02 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=25.1
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|+|++|+|||||+.-++
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (241)
T cd03256 21 SLSINPGEFVALIGPSGAGKSTLLRCLN 48 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999999997665
No 160
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.22 E-value=0.019 Score=52.89 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=26.0
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+..+|+|++|+|||||+.-+.
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (230)
T TIGR03410 18 GVSLEVPKGEVTCVLGRNGVGKTTLLKTLM 47 (230)
T ss_pred ceeeEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 445789999999999999999999997554
No 161
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.18 E-value=0.023 Score=51.58 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=27.4
Q ss_pred eeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 217 ID~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+|.=+.+.+|+.++|+|++|+|||||+..+.
T Consensus 15 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 45 (211)
T cd03298 15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLIA 45 (211)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3777899999999999999999999997554
No 162
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.18 E-value=0.02 Score=53.10 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=25.9
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.-
T Consensus 21 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (239)
T cd03296 21 VSLDIPSGELVALLGPSGSGKTTLLRLIAG 50 (239)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 346889999999999999999999976553
No 163
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.16 E-value=0.19 Score=46.88 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=19.8
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+-+.|.|++|+|||+|+..+...
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHh
Confidence 36889999999999999987654
No 164
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.16 E-value=0.027 Score=49.08 Aligned_cols=35 Identities=40% Similarity=0.542 Sum_probs=21.9
Q ss_pred eeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGN 271 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~ 271 (348)
||.|.|++++|||||+..+... ++.++ .|-.|++.
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~------g~~~v---~E~ar~~~ 35 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR------GYPVV---PEYAREII 35 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH------T-EEE-----TTHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc------CCeEE---eecHHHHH
Confidence 7899999999999999888653 33322 67766653
No 165
>PRK06526 transposase; Provisional
Probab=95.15 E-value=0.027 Score=53.81 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=24.1
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
-+++.+.|.|++|+|||+|+..+....+
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 4688999999999999999998876554
No 166
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.15 E-value=0.02 Score=52.62 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=25.5
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
-+.+-+|.+++|.||+|+|||||+.+++.
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHh
Confidence 36788999999999999999999987654
No 167
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.14 E-value=0.021 Score=52.74 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=25.9
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (235)
T cd03261 18 GVDLDVRRGEILAIIGPSGSGKSTLLRLIV 47 (235)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344689999999999999999999997654
No 168
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.14 E-value=0.021 Score=52.63 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=25.5
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
=+.+.+|+.++|.|++|+|||||+.-++.
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 53 (233)
T cd03258 25 SLSVPKGEIFGIIGRSGAGKSTLIRCING 53 (233)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 37889999999999999999999986653
No 169
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.13 E-value=0.021 Score=53.00 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=24.9
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|+|++|+|||||+.-++
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (242)
T PRK11124 22 TLDCPQGETLVLLGPSGAGKSSLLRVLN 49 (242)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3788999999999999999999997654
No 170
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.13 E-value=0.022 Score=51.66 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=24.9
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|+|++|+|||||+.-++
T Consensus 20 s~~i~~G~~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03262 20 DLTVKKGEVVVIIGPSGSGKSTLLRCIN 47 (213)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3678999999999999999999997655
No 171
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.12 E-value=0.029 Score=56.80 Aligned_cols=62 Identities=26% Similarity=0.323 Sum_probs=46.6
Q ss_pred ceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchh
Q 018957 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE 269 (348)
Q Consensus 208 e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rE 269 (348)
.-+.||+..+|-++ -+.+|+=+.|-|.+|+|||+++.+++.|.+..++.-+.|.-.-....+
T Consensus 175 ~gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~ 237 (421)
T TIGR03600 175 TGLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQ 237 (421)
T ss_pred cceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHH
Confidence 45899999999987 599999999999999999999999998886333222334333333333
No 172
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.12 E-value=0.022 Score=51.82 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=24.9
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (213)
T cd03259 20 SLTVEPGEFLALLGPSGCGKTTLLRLIA 47 (213)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3678999999999999999999997654
No 173
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.11 E-value=0.022 Score=51.53 Aligned_cols=27 Identities=37% Similarity=0.400 Sum_probs=24.3
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+.+.+|+..+|.|++|+|||||+.-+.
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILA 47 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 578899999999999999999997554
No 174
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.10 E-value=0.022 Score=51.81 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=26.0
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|+.++|.|++|+|||||+.-+..
T Consensus 20 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (207)
T PRK13539 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAG 50 (207)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3445889999999999999999999875543
No 175
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.10 E-value=0.021 Score=52.19 Aligned_cols=29 Identities=28% Similarity=0.594 Sum_probs=25.2
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+-+|+.++|.|++|+|||||+.-+.
T Consensus 24 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (228)
T cd03257 24 VSFSIKKGETLGLVGESGSGKSTLARAIL 52 (228)
T ss_pred ceeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34678899999999999999999997554
No 176
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.09 E-value=0.022 Score=52.67 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=25.9
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|.|++|+|||||+..++
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (237)
T cd03252 20 NISLRIKPGEVVGIVGRSGSGKSTLTKLIQ 49 (237)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344678899999999999999999997665
No 177
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.09 E-value=0.022 Score=52.43 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=25.0
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (232)
T cd03218 20 SLSVKQGEIVGLLGPNGAGKTTTFYMIV 47 (232)
T ss_pred eeEecCCcEEEEECCCCCCHHHHHHHHh
Confidence 3788999999999999999999997654
No 178
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.09 E-value=0.021 Score=53.23 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=26.1
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.-
T Consensus 21 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14247 21 GVNLEIPDNTITALMGPSGSGKSTLLRVFNR 51 (250)
T ss_pred cceeEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3346788999999999999999999976543
No 179
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.07 E-value=0.023 Score=51.84 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=25.3
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|.|++|+|||||+..+.
T Consensus 23 i~~~i~~G~~~~i~G~nGsGKSTLl~~i~ 51 (220)
T cd03245 23 VSLTIRAGEKVAIIGRVGSGKSTLLKLLA 51 (220)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 33678999999999999999999997554
No 180
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.07 E-value=0.023 Score=51.76 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=24.9
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (218)
T cd03266 25 SFTVKPGEVTGLLGPNGAGKTTTLRMLA 52 (218)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 4678899999999999999999997554
No 181
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.06 E-value=0.021 Score=52.71 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=25.0
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 20 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (236)
T cd03219 20 SFSVRPGEIHGLIGPNGAGKTTLFNLIS 47 (236)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHc
Confidence 3678999999999999999999998654
No 182
>PRK08118 topology modulation protein; Reviewed
Probab=95.06 E-value=0.021 Score=50.84 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.9
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+|+.|+|++|+|||||+..+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988764
No 183
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.05 E-value=0.024 Score=52.26 Aligned_cols=30 Identities=27% Similarity=0.456 Sum_probs=25.7
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+..++
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (234)
T cd03251 20 DISLDIPAGETVALVGPSGSGKSTLVNLIP 49 (234)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 334678899999999999999999997654
No 184
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.05 E-value=0.024 Score=52.57 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=24.9
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (236)
T TIGR03864 21 SFTVRPGEFVALLGPNGAGKSTLFSLLT 48 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3678899999999999999999997654
No 185
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.03 E-value=0.026 Score=50.13 Aligned_cols=31 Identities=35% Similarity=0.595 Sum_probs=26.4
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|+..+|.|++|+|||||+..+.-
T Consensus 20 ~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G 50 (178)
T cd03247 20 NLSLELKQGEKIALLGRSGSGKSTLLQLLTG 50 (178)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3446788999999999999999999976654
No 186
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.03 E-value=0.023 Score=53.11 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=25.3
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 23 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 51 (253)
T PRK14267 23 VDLKIPQNGVFALMGPSGCGKSTLLRTFN 51 (253)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34788999999999999999999997554
No 187
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.02 E-value=0.023 Score=53.38 Aligned_cols=31 Identities=32% Similarity=0.501 Sum_probs=26.6
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|+.++|.|++|+|||||+.-+..
T Consensus 24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 54 (258)
T PRK11701 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSA 54 (258)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4457899999999999999999999976553
No 188
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.01 E-value=0.022 Score=51.79 Aligned_cols=27 Identities=22% Similarity=0.484 Sum_probs=24.3
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~ 46 (213)
T cd03235 20 FEVKPGEFLAIVGPNGAGKSTLLKAIL 46 (213)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 578999999999999999999997554
No 189
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.00 E-value=0.025 Score=51.29 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=25.7
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+-+|++++|+|++|+|||||+.-+.
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (201)
T cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILA 47 (201)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 444688899999999999999999987554
No 190
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.00 E-value=0.025 Score=51.30 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=25.5
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|+.++|.|++|+|||||+.-+..
T Consensus 19 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03301 19 LNLDIADGEFVVLLGPSGCGKTTTLRMIAG 48 (213)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999999999975553
No 191
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.00 E-value=0.024 Score=51.43 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=24.5
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|+|++|+|||||+.-|.
T Consensus 22 s~~i~~G~~~~l~G~nGsGKSTLl~~i~ 49 (214)
T TIGR02673 22 SLHIRKGEFLFLTGPSGAGKTTLLKLLY 49 (214)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3688999999999999999999997543
No 192
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.99 E-value=0.027 Score=49.61 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=24.6
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 47 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILS 47 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 778999999999999999999997554
No 193
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.97 E-value=0.026 Score=53.15 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=24.9
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|+|++|+|||||+..++
T Consensus 32 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 59 (259)
T PRK14274 32 NLSIPENEVTAIIGPSGCGKSTFIKTLN 59 (259)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3678899999999999999999997655
No 194
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.97 E-value=0.025 Score=52.44 Aligned_cols=30 Identities=30% Similarity=0.536 Sum_probs=25.7
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 21 ~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 50 (241)
T PRK10895 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVV 50 (241)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 344788999999999999999999997554
No 195
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.96 E-value=0.024 Score=52.45 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=25.8
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (243)
T TIGR01978 18 GVNLTVKKGEIHAIMGPNGSGKSTLSKTIA 47 (243)
T ss_pred ccceEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344678999999999999999999997654
No 196
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=94.94 E-value=0.025 Score=52.74 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=26.5
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+..+.
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14240 21 KINLDIEENQVTALIGPSGCGKSTFLRTLN 50 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 555789999999999999999999997654
No 197
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.94 E-value=0.025 Score=51.71 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=24.8
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~ 51 (220)
T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLLRIIA 51 (220)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 3678999999999999999999997554
No 198
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.93 E-value=0.026 Score=52.61 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=25.4
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-++
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (250)
T PRK11264 22 IDLEVKPGEVVAIIGPSGSGKTTLLRCIN 50 (250)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34778999999999999999999997554
No 199
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.93 E-value=0.025 Score=51.10 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=26.4
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|+..+|.|++|+|||||+.-+..
T Consensus 23 ~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G 53 (204)
T cd03250 23 DINLEVPKGELVAIVGPVGSGKSSLLSALLG 53 (204)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3447899999999999999999999976554
No 200
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.91 E-value=0.027 Score=53.27 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=25.4
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|.|++|+|||||+.-++
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (255)
T PRK11248 20 INLTLESGELLVVLGPSGCGKTTLLNLIA 48 (255)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999999999999997655
No 201
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.91 E-value=0.027 Score=52.25 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=26.2
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|+.++|+|++|+|||||+.-++-
T Consensus 19 ~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 49 (240)
T PRK09493 19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINK 49 (240)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3447789999999999999999999976553
No 202
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.91 E-value=0.027 Score=51.72 Aligned_cols=29 Identities=34% Similarity=0.540 Sum_probs=25.4
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|.|++|+|||||+..++
T Consensus 29 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 57 (228)
T PRK10584 29 VELVVKRGETIALIGESGSGKSTLLAILA 57 (228)
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 34778999999999999999999997654
No 203
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.90 E-value=0.024 Score=53.64 Aligned_cols=29 Identities=34% Similarity=0.513 Sum_probs=25.3
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+..+.
T Consensus 30 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 58 (265)
T PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLG 58 (265)
T ss_pred eeeEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 44788999999999999999999997554
No 204
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.90 E-value=0.027 Score=51.55 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=25.9
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|++++|.|++|+|||||+.-|+
T Consensus 29 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 58 (214)
T PRK13543 29 PLDFHVDAGEALLVQGDNGAGKTTLLRVLA 58 (214)
T ss_pred cceEEECCCCEEEEEcCCCCCHHHHHHHHh
Confidence 344778999999999999999999997654
No 205
>PRK07261 topology modulation protein; Provisional
Probab=94.88 E-value=0.025 Score=50.48 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.5
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+|+.|+|.+|+|||||+..+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999988654
No 206
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.88 E-value=0.028 Score=52.42 Aligned_cols=30 Identities=27% Similarity=0.497 Sum_probs=26.0
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|.|++|+|||||+.-++
T Consensus 21 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (241)
T PRK14250 21 DISVKFEGGAIYTIVGPSGAGKSTLIKLIN 50 (241)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 445788999999999999999999997554
No 207
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.87 E-value=0.028 Score=52.22 Aligned_cols=29 Identities=28% Similarity=0.345 Sum_probs=25.3
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+..+|+|++|+|||||+.-+.
T Consensus 20 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (242)
T cd03295 20 LNLEIAKGEFLVLIGPSGSGKTTTMKMIN 48 (242)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 33788999999999999999999997554
No 208
>PRK14974 cell division protein FtsY; Provisional
Probab=94.86 E-value=0.22 Score=49.71 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=23.6
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
.++..+++.|++|+||||++..++....
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999998886543
No 209
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.85 E-value=0.028 Score=52.56 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=25.3
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 24 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (252)
T PRK14255 24 IDLDFNQNEITALIGPSGCGKSTYLRTLN 52 (252)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34678999999999999999999997654
No 210
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.84 E-value=0.14 Score=51.15 Aligned_cols=86 Identities=26% Similarity=0.375 Sum_probs=58.7
Q ss_pred eeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEE-ecCCCCHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVY-GQMNEPPG 306 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~-~tsdep~~ 306 (348)
-++++|-.|+||||-+..+++...+ .+..|+.+-|...|-.+ +++|+..+- +-.+-+|. ....+|+.
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~--~g~~VllaA~DTFRAaA--iEQL~~w~e--------r~gv~vI~~~~G~DpAa 208 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQ--QGKSVLLAAGDTFRAAA--IEQLEVWGE--------RLGVPVISGKEGADPAA 208 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHH--CCCeEEEEecchHHHHH--HHHHHHHHH--------HhCCeEEccCCCCCcHH
Confidence 4688999999999999999876643 36777878888888765 366665540 12344555 34667765
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcEEEE
Q 018957 307 ARARVGLTGLTVAEHFRDAEGQDVLLF 333 (348)
Q Consensus 307 ~r~~a~~~a~tiAEyfrd~~G~dVLli 333 (348)
++|-|+..|. . +|.||||+
T Consensus 209 ----VafDAi~~Ak---a-r~~Dvvli 227 (340)
T COG0552 209 ----VAFDAIQAAK---A-RGIDVVLI 227 (340)
T ss_pred ----HHHHHHHHHH---H-cCCCEEEE
Confidence 5566665544 4 79999875
No 211
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.84 E-value=0.035 Score=49.99 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=27.1
Q ss_pred eeeceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 216 vID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
..|.=+.+.+|++++|.|++|+|||||+..++.
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 48 (195)
T PRK13541 16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAG 48 (195)
T ss_pred EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 344446789999999999999999999976543
No 212
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.84 E-value=0.029 Score=51.84 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=24.9
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 56 (233)
T PRK11629 29 SFSIGEGEMMAIVGSSGSGKSTLLHLLG 56 (233)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3688999999999999999999997554
No 213
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.83 E-value=0.028 Score=51.99 Aligned_cols=31 Identities=26% Similarity=0.439 Sum_probs=26.3
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|+.++|+|++|+|||||+..++-
T Consensus 21 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 51 (238)
T cd03249 21 GLSLTIPPGKTVALVGSSGCGKSTVVSLLER 51 (238)
T ss_pred ceEEEecCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 3446889999999999999999999976553
No 214
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.83 E-value=0.031 Score=49.37 Aligned_cols=31 Identities=29% Similarity=0.453 Sum_probs=26.2
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|++.+|.|++|+|||||+..+..
T Consensus 19 ~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (166)
T cd03223 19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAG 49 (166)
T ss_pred cCeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3447889999999999999999999976543
No 215
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.82 E-value=0.029 Score=49.95 Aligned_cols=30 Identities=33% Similarity=0.618 Sum_probs=25.3
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 17 ~~~~~i~~G~~~~l~G~nGsGKStLl~~i~ 46 (180)
T cd03214 17 DLSLSIEAGEIVGILGPNGAGKSTLLKTLA 46 (180)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 344678899999999999999999987554
No 216
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.81 E-value=0.03 Score=51.11 Aligned_cols=29 Identities=34% Similarity=0.488 Sum_probs=25.2
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 21 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (220)
T cd03263 21 LSLNVYKGEIFGLLGHNGAGKTTTLKMLT 49 (220)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 34678999999999999999999997554
No 217
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=94.81 E-value=0.034 Score=55.25 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=28.2
Q ss_pred eeeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 216 vID~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.+|.=+.+.+|+.++|+|++|+|||||+..+.
T Consensus 14 ~~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~ia 45 (352)
T PRK11144 14 CLTVNLTLPAQGITAIFGRSGAGKTSLINAIS 45 (352)
T ss_pred EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 35778899999999999999999999997554
No 218
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.80 E-value=0.032 Score=49.39 Aligned_cols=29 Identities=34% Similarity=0.595 Sum_probs=25.0
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 19 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~ 47 (173)
T cd03230 19 ISLTVEKGEIYGLLGPNGAGKTTLIKIIL 47 (173)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 33678899999999999999999997554
No 219
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.79 E-value=0.03 Score=49.93 Aligned_cols=30 Identities=27% Similarity=0.363 Sum_probs=25.7
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|+..+|+|++|+|||||+.-+.-
T Consensus 19 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (182)
T cd03215 19 VSFEVRAGEIVGIAGLVGNGQTELAEALFG 48 (182)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 447789999999999999999999976543
No 220
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.78 E-value=0.031 Score=50.59 Aligned_cols=30 Identities=23% Similarity=0.466 Sum_probs=25.7
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|+..+|+|++|+|||||+..+.-
T Consensus 19 ~~~~i~~G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 19 ISLHVKKGEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 336788999999999999999999976653
No 221
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=94.78 E-value=0.029 Score=51.84 Aligned_cols=30 Identities=27% Similarity=0.555 Sum_probs=25.7
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|+.++|.|++|+|||||+..+.-
T Consensus 5 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 34 (230)
T TIGR02770 5 LNLSLKRGEVLALVGESGSGKSLTCLAILG 34 (230)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 346788999999999999999999976654
No 222
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.76 E-value=0.1 Score=49.38 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=22.6
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+-..+..+.++|++|||||+++.-+++.
T Consensus 38 ~~~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 38 TSKQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred CCCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 3455667899999999999999877654
No 223
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.76 E-value=0.034 Score=49.18 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=25.2
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
=+.+.+|+.++|.|++|+|||||+.-++-
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 22 SFSIEPGESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHh
Confidence 36788999999999999999999976553
No 224
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.76 E-value=0.031 Score=51.85 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=25.0
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 49 (242)
T TIGR03411 22 SLYVDPGELRVIIGPNGAGKTTMMDVIT 49 (242)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999999997655
No 225
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.75 E-value=0.34 Score=46.75 Aligned_cols=30 Identities=37% Similarity=0.450 Sum_probs=25.4
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~ 252 (348)
-.+++.+.+.|++|+||||++..++...++
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~ 98 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKK 98 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 456788999999999999999999876644
No 226
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=94.75 E-value=0.03 Score=54.21 Aligned_cols=29 Identities=31% Similarity=0.444 Sum_probs=25.4
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+..+|+|++|+|||||+..+.
T Consensus 12 vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~ 40 (302)
T TIGR01188 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLT 40 (302)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999999999999997655
No 227
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=94.73 E-value=0.031 Score=52.55 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=25.8
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-++
T Consensus 22 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~la 51 (258)
T PRK14241 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLN 51 (258)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 334778999999999999999999997655
No 228
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.73 E-value=0.031 Score=53.07 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=25.8
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 30 ~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~ 59 (257)
T PRK11247 30 QLDLHIPAGQFVAVVGRSGCGKSTLLRLLA 59 (257)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344688999999999999999999997554
No 229
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.73 E-value=0.028 Score=56.34 Aligned_cols=35 Identities=29% Similarity=0.499 Sum_probs=29.7
Q ss_pred ceeeee-ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 213 GIKVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 213 GIkvID-~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+..++| .=+.|.+|.-+.+.||+|||||||+..|+
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IA 52 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIA 52 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHh
Confidence 456665 66889999999999999999999997654
No 230
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=94.73 E-value=0.03 Score=52.36 Aligned_cols=30 Identities=30% Similarity=0.473 Sum_probs=25.7
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+-+|+.++|+|++|+|||||+..+.
T Consensus 21 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (253)
T TIGR02323 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLA 50 (253)
T ss_pred cceEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 344778899999999999999999997554
No 231
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.73 E-value=0.032 Score=51.44 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=25.3
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|.|++|+|||||+.-++
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (225)
T PRK10247 26 ISFSLRAGEFKLITGPSGCGKSTLLKIVA 54 (225)
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 44788999999999999999999997554
No 232
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.73 E-value=0.031 Score=52.23 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=25.1
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 53 (253)
T PRK14242 26 SLEFEQNQVTALIGPSGCGKSTFLRCLN 53 (253)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHHHHHH
Confidence 3678999999999999999999998665
No 233
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=94.72 E-value=0.031 Score=52.25 Aligned_cols=30 Identities=30% Similarity=0.507 Sum_probs=25.8
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-|.
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (252)
T TIGR03005 18 GLNFSVAAGEKVALIGPSGSGKSTILRILM 47 (252)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344689999999999999999999997554
No 234
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=94.72 E-value=0.031 Score=55.06 Aligned_cols=34 Identities=29% Similarity=0.502 Sum_probs=28.0
Q ss_pred eeeece-eecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 215 KVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 215 kvID~l-~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+++|.+ +.+.+|+.++|+|++|+|||||+..+..
T Consensus 21 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~G 55 (330)
T PRK15093 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICG 55 (330)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHc
Confidence 445444 5899999999999999999999976653
No 235
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.71 E-value=0.031 Score=52.36 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=25.0
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (254)
T PRK14273 27 NIKILKNSITALIGPSGCGKSTFLRTLN 54 (254)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3688999999999999999999997664
No 236
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=94.71 E-value=0.032 Score=51.57 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=26.6
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+..+|+|++|+|||||+.-+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 46 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIA 46 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 566889999999999999999999997554
No 237
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=94.68 E-value=0.033 Score=53.03 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=25.9
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-|.
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 54 (272)
T PRK15056 25 DASFTVPGGSIAALVGVNGSGKSTLFKALM 54 (272)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 445689999999999999999999997554
No 238
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.67 E-value=0.032 Score=50.96 Aligned_cols=27 Identities=22% Similarity=0.461 Sum_probs=24.2
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+.+.+|+..+|+|++|+|||||+.-+.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 48 (218)
T cd03290 22 IRIPTGQLTMIVGQVGCGKSSLLLAIL 48 (218)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 578899999999999999999997554
No 239
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=94.65 E-value=0.034 Score=51.56 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=24.7
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|+|++|+|||||+..+.
T Consensus 5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 32 (230)
T TIGR01184 5 NLTIQQGEFISLIGHSGCGKSTLLNLIS 32 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3678899999999999999999997654
No 240
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.65 E-value=0.03 Score=53.79 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=25.8
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|+.++|+|++|+|||||+.-+..
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~G 55 (286)
T PRK13646 26 VNTEFEQGKYYAIVGQTGSGKSTLIQNINA 55 (286)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 336788999999999999999999976653
No 241
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.65 E-value=0.034 Score=50.91 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=25.8
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 55 (224)
T TIGR02324 26 NVSLTVNAGECVALSGPSGAGKSTLLKSLY 55 (224)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 334789999999999999999999997554
No 242
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.64 E-value=0.033 Score=52.60 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=24.8
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|+|++|+|||||+.-|.
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 49 (258)
T PRK13548 22 SLTLRPGEVVAILGPNGAGKSTLLRALS 49 (258)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3678899999999999999999997554
No 243
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=94.64 E-value=0.033 Score=52.86 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=26.2
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-++
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (269)
T PRK11831 25 NISLTVPRGKITAIMGPSGIGKTTLLRLIG 54 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 455789999999999999999999997554
No 244
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.64 E-value=0.034 Score=51.09 Aligned_cols=30 Identities=27% Similarity=0.255 Sum_probs=25.8
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|+..+|.|++|+|||||+.-+..
T Consensus 6 vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~G 35 (213)
T PRK15177 6 TDFVMGYHEHIGILAAPGSGKTTLTRLLCG 35 (213)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999999976553
No 245
>PRK10908 cell division protein FtsE; Provisional
Probab=94.64 E-value=0.035 Score=50.84 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=24.8
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|+|++|+|||||+.-++
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (222)
T PRK10908 22 TFHMRPGEMAFLTGHSGAGKSTLLKLIC 49 (222)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3678999999999999999999997654
No 246
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.63 E-value=0.035 Score=45.04 Aligned_cols=22 Identities=50% Similarity=0.715 Sum_probs=19.8
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..++..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999988753
No 247
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.62 E-value=0.034 Score=52.64 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=24.9
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|+|++|+|||||+.-++
T Consensus 41 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 68 (268)
T PRK14248 41 SMDIEKHAVTALIGPSGCGKSTFLRSIN 68 (268)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3678899999999999999999997665
No 248
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=94.62 E-value=0.034 Score=51.83 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=25.8
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 23 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (252)
T PRK14239 23 SVSLDFYPNEITALIGPSGSGKSTLLRSIN 52 (252)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 334778899999999999999999997664
No 249
>PRK09165 replicative DNA helicase; Provisional
Probab=94.62 E-value=0.047 Score=56.98 Aligned_cols=46 Identities=30% Similarity=0.315 Sum_probs=40.9
Q ss_pred ceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhh
Q 018957 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (348)
Q Consensus 208 e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~ 253 (348)
.-+.||+.-+|-++ -+.+|+=+.|-|.+|+|||+++.+++.|.++.
T Consensus 198 ~gi~TG~~~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~ 244 (497)
T PRK09165 198 SGISTGLRDLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKA 244 (497)
T ss_pred CcccCChHHHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHh
Confidence 45889999999987 58899999999999999999999999988754
No 250
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.60 E-value=0.035 Score=51.79 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=25.2
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|.|++|+|||||+.-++
T Consensus 22 i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14262 22 VTMKIFKNQITAIIGPSGCGKTTLLRSIN 50 (250)
T ss_pred eeEeecCCCEEEEECCCCCCHHHHHHHHh
Confidence 34678899999999999999999997554
No 251
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=94.60 E-value=0.035 Score=51.78 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=25.4
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (247)
T TIGR00972 20 INLDIPKNQVTALIGPSGCGKSTLLRSLN 48 (247)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 34678999999999999999999997654
No 252
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.59 E-value=0.036 Score=50.27 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=26.1
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+..+|.|++|+|||||+.-+.
T Consensus 19 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 48 (204)
T PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILA 48 (204)
T ss_pred cceEEECCCcEEEEECCCCCCHHHHHHHHh
Confidence 455789999999999999999999997554
No 253
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.58 E-value=0.034 Score=53.34 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=25.3
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|.|++|+|||||+..+.
T Consensus 30 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 58 (289)
T PRK13645 30 TSLTFKKNKVTCVIGTTGSGKSTMIQLTN 58 (289)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 33688999999999999999999997654
No 254
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.58 E-value=0.037 Score=50.78 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=24.3
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 61 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTVVALLE 61 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 678899999999999999999997554
No 255
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.57 E-value=0.1 Score=52.92 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=18.9
Q ss_pred eEeecCCCCcHHHHHHHHHHHHHhhc
Q 018957 229 IGLFGGAGVGKTVLIMELINNVAKAH 254 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n~a~~~ 254 (348)
+-+.|++|||||+|+.-++.+ ++.+
T Consensus 165 mIlWGppG~GKTtlArlia~t-sk~~ 189 (554)
T KOG2028|consen 165 MILWGPPGTGKTTLARLIAST-SKKH 189 (554)
T ss_pred eEEecCCCCchHHHHHHHHhh-cCCC
Confidence 457899999999999866654 3433
No 256
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.57 E-value=0.035 Score=52.90 Aligned_cols=29 Identities=21% Similarity=0.364 Sum_probs=25.2
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-++
T Consensus 26 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 54 (280)
T PRK13649 26 VNLTIEDGSYTAFIGHTGSGKSTIMQLLN 54 (280)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 33678899999999999999999997654
No 257
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=94.56 E-value=0.035 Score=54.70 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=26.4
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|+.++|+|++|+|||||+.-|..
T Consensus 33 ~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~g 63 (327)
T PRK11308 33 GVSFTLERGKTLAVVGESGCGKSTLARLLTM 63 (327)
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHHc
Confidence 3457889999999999999999999976553
No 258
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.56 E-value=0.038 Score=50.07 Aligned_cols=31 Identities=35% Similarity=0.663 Sum_probs=26.1
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+..
T Consensus 26 ~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 26 NVSFKVKAGEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3446788999999999999999999986543
No 259
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=94.54 E-value=0.036 Score=55.31 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=26.6
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 20 ~isl~i~~Ge~~~llGpsGsGKSTLLr~IaG 50 (353)
T PRK10851 20 DISLDIPSGQMVALLGPSGSGKTTLLRIIAG 50 (353)
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4557899999999999999999999976553
No 260
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=94.54 E-value=0.037 Score=51.51 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=25.7
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|+.++|+|++|+|||||+..++-
T Consensus 40 vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~G 69 (236)
T cd03267 40 ISFTIEKGEIVGFIGPNGAGKTTTLKILSG 69 (236)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 336788999999999999999999976653
No 261
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=94.54 E-value=0.035 Score=53.74 Aligned_cols=29 Identities=34% Similarity=0.551 Sum_probs=25.4
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|.|++|+|||||+..+.
T Consensus 23 vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~ 51 (303)
T TIGR01288 23 LSFTIARGECFGLLGPNGAGKSTIARMLL 51 (303)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999999999999997654
No 262
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.54 E-value=0.034 Score=45.37 Aligned_cols=21 Identities=43% Similarity=0.627 Sum_probs=18.8
Q ss_pred eEeecCCCCcHHHHHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+|.|.+|+|||||+..+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988765
No 263
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.53 E-value=0.037 Score=52.46 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=26.0
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+..++
T Consensus 27 ~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~ 56 (269)
T PRK13648 27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMI 56 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 444788999999999999999999997554
No 264
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.53 E-value=0.036 Score=51.51 Aligned_cols=28 Identities=25% Similarity=0.327 Sum_probs=24.0
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|.|++|+|||||+..++
T Consensus 15 sl~i~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 15 DVDIPRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred eeecCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 3689999999999999999999974333
No 265
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.52 E-value=0.04 Score=49.67 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=25.2
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (198)
T TIGR01189 19 LSFTLNAGEALQVTGPNGIGKTTLLRILA 47 (198)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 44678899999999999999999997554
No 266
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=94.52 E-value=0.034 Score=52.66 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=25.2
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+..+.
T Consensus 26 isl~i~~Ge~~~i~G~nGsGKSTLl~~i~ 54 (265)
T PRK10253 26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLS 54 (265)
T ss_pred cceEECCCCEEEEECCCCCCHHHHHHHHc
Confidence 33788999999999999999999997554
No 267
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.52 E-value=0.038 Score=52.17 Aligned_cols=29 Identities=24% Similarity=0.466 Sum_probs=25.4
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+..|+
T Consensus 23 vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~ 51 (251)
T PRK09544 23 VSLELKPGKILTLLGPNGAGKSTLVRVVL 51 (251)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 33778999999999999999999997654
No 268
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=94.52 E-value=0.039 Score=52.37 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=25.4
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
=+.+.+|+.++|.|++|+|||||+.-|.-
T Consensus 40 sl~i~~Ge~~~I~G~nGsGKSTLl~~l~G 68 (267)
T PRK14237 40 DMQFEKNKITALIGPSGSGKSTYLRSLNR 68 (267)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 36888999999999999999999976553
No 269
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.50 E-value=0.035 Score=50.47 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=26.0
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+-+|+..+|+|++|+|||||+..+.-
T Consensus 25 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 55 (202)
T cd03233 25 DFSGVVKPGEMVLVLGRPGSGCSTLLKALAN 55 (202)
T ss_pred eEEEEECCCcEEEEECCCCCCHHHHHHHhcc
Confidence 3346788999999999999999999976543
No 270
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.49 E-value=0.039 Score=51.63 Aligned_cols=28 Identities=14% Similarity=0.407 Sum_probs=24.9
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+.+.+|+.++|.|++|+|||||+.-+.-
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G 52 (252)
T PRK14256 25 MDFPENSVTAIIGPSGCGKSTVLRSINR 52 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 5788999999999999999999976653
No 271
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.49 E-value=0.04 Score=50.48 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=24.6
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+-+|+.++|+|++|+|||||+.-+.
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (223)
T TIGR03740 20 SLTVPKNSVYGLLGPNGAGKSTLLKMIT 47 (223)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3678899999999999999999997554
No 272
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.48 E-value=0.04 Score=50.80 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=26.2
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|+.++|.|++|+|||||+..|.-
T Consensus 19 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G 49 (236)
T cd03253 19 DVSFTIPAGKKVAIVGPSGSGKSTILRLLFR 49 (236)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4446788999999999999999999976653
No 273
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=94.47 E-value=0.039 Score=52.29 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=25.6
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|.|++|+|||||+..++
T Consensus 29 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 57 (264)
T PRK14243 29 VWLDIPKNQITAFIGPSGCGKSTILRCFN 57 (264)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 44778899999999999999999997665
No 274
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.47 E-value=0.041 Score=51.35 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=26.0
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 21 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (250)
T PRK14266 21 NVNLDIPKNSVTALIGPSGCGKSTFIRTLN 50 (250)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 444778899999999999999999997664
No 275
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.47 E-value=0.038 Score=51.65 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=25.6
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|.|++|+|||||+.-++
T Consensus 23 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (255)
T PRK11300 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLT 52 (255)
T ss_pred eeeeEEcCCeEEEEECCCCCCHHHHHHHHh
Confidence 334688999999999999999999997554
No 276
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.46 E-value=0.039 Score=52.44 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=24.3
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+.+.+|+.++|.|++|+|||||+.-++
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~ 56 (271)
T PRK13632 30 FEINEGEYVAILGHNGSGKSTISKILT 56 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 688999999999999999999997554
No 277
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.46 E-value=0.048 Score=53.88 Aligned_cols=35 Identities=31% Similarity=0.610 Sum_probs=30.9
Q ss_pred eeeeece-eecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 214 IKVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 214 IkvID~l-~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+++||.+ +.+.+|+.++|+|.+|+|||+++..++.
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~ 53 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMG 53 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHh
Confidence 6777765 7899999999999999999999987765
No 278
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=94.45 E-value=0.038 Score=52.31 Aligned_cols=30 Identities=30% Similarity=0.603 Sum_probs=26.0
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|.|++|+|||||+.-++
T Consensus 29 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 58 (265)
T TIGR02769 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLL 58 (265)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 445789999999999999999999997554
No 279
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.44 E-value=0.039 Score=53.01 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=25.9
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-++
T Consensus 25 ~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~ 54 (287)
T PRK13641 25 NISFELEEGSFVALVGHTGSGKSTLMQHFN 54 (287)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 344788999999999999999999997655
No 280
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=94.44 E-value=0.041 Score=52.40 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=25.7
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|+.++|.|++|+|||||+.-|+-
T Consensus 43 vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~G 72 (271)
T PRK14238 43 INLDIHENEVTAIIGPSGCGKSTYIKTLNR 72 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 336788999999999999999999976553
No 281
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.44 E-value=0.038 Score=50.07 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=26.2
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|+.++|.|++|+|||||+.-++-
T Consensus 18 ~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G 48 (200)
T cd03217 18 GVNLTIKKGEVHALMGPNGSGKSTLAKTIMG 48 (200)
T ss_pred ccceEECCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3446899999999999999999999976543
No 282
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=94.44 E-value=0.039 Score=51.99 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=25.4
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 32 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 60 (260)
T PRK10744 32 INLDIAKNQVTAFIGPSGCGKSTLLRTFN 60 (260)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34678899999999999999999997665
No 283
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.43 E-value=0.037 Score=52.54 Aligned_cols=29 Identities=34% Similarity=0.535 Sum_probs=25.2
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 20 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (271)
T PRK13638 20 LNLDFSLSPVTGLVGANGCGKSTLFMNLS 48 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 34678899999999999999999997554
No 284
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=94.42 E-value=0.04 Score=51.75 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=25.7
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 50 (254)
T PRK10418 21 GVSLTLQRGRVLALVGGSGSGKSLTCAAAL 50 (254)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344789999999999999999999987554
No 285
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.42 E-value=0.041 Score=51.41 Aligned_cols=30 Identities=13% Similarity=0.320 Sum_probs=25.9
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+..+.
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14245 21 GISMEIEEKSVVAFIGPSGCGKSTFLRLFN 50 (250)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 344678999999999999999999997664
No 286
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.41 E-value=0.035 Score=51.19 Aligned_cols=27 Identities=33% Similarity=0.688 Sum_probs=23.6
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.+.+|+.++|+|++|+|||||+.-+..
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G 28 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILG 28 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 577999999999999999999976553
No 287
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.40 E-value=0.043 Score=51.32 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=25.8
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+..+|+|++|+|||||+.-+.
T Consensus 23 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~ 52 (251)
T PRK14244 23 DINLDIYKREVTAFIGPSGCGKSTFLRCFN 52 (251)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 344689999999999999999999997554
No 288
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.40 E-value=0.042 Score=51.74 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=25.9
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-|.
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 59 (258)
T PRK14268 30 NVSMQIPKNSVTALIGPSGCGKSTFIRCLN 59 (258)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344789999999999999999999997654
No 289
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=94.40 E-value=0.04 Score=54.96 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=25.4
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+..++
T Consensus 25 isl~i~~Ge~~~llGpsGsGKSTLLr~Ia 53 (351)
T PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVA 53 (351)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHH
Confidence 45788999999999999999999997554
No 290
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.40 E-value=0.041 Score=49.71 Aligned_cols=30 Identities=23% Similarity=0.427 Sum_probs=25.7
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|+..+|.|++|+|||||+.-++.
T Consensus 28 ~~~~i~~Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 28 VSGKAKPGELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999999999976543
No 291
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.38 E-value=0.096 Score=47.24 Aligned_cols=49 Identities=29% Similarity=0.505 Sum_probs=31.5
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE 279 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~ 279 (348)
+.+|+-+.|+|++|+|||.|+..+++...+ ++--+.|+ ...++++++++
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~~v~f~-------~~~~L~~~l~~ 92 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIR-KGYSVLFI-------TASDLLDELKQ 92 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEE-------EHHHHHHHHHC
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCcceeEe-------ecCceeccccc
Confidence 347888999999999999999988876554 33334444 24555666543
No 292
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.37 E-value=0.044 Score=48.40 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=24.7
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+..+|.|++|+|||||+.-+.
T Consensus 22 ~~~i~~G~~~~l~G~nGsGKstLl~~i~ 49 (171)
T cd03228 22 SLTIKPGEKVAIVGPSGSGKSTLLKLLL 49 (171)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3678899999999999999999997554
No 293
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.37 E-value=0.043 Score=52.53 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=26.9
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|+.++|+|++|+|||||+..|+-
T Consensus 39 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~G 69 (276)
T PRK14271 39 QVSMGFPARAVTSLMGPTGSGKTTFLRTLNR 69 (276)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 5557889999999999999999999976653
No 294
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.36 E-value=0.043 Score=51.19 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=24.7
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 24 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 51 (252)
T PRK14272 24 NLDVQRGTVNALIGPSGCGKTTFLRAIN 51 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3678999999999999999999997554
No 295
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=94.36 E-value=0.041 Score=52.29 Aligned_cols=30 Identities=27% Similarity=0.537 Sum_probs=25.9
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|.|++|+|||||+.-|.
T Consensus 30 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 59 (268)
T PRK10419 30 NVSLSLKSGETVALLGRSGCGKSTLARLLV 59 (268)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344789999999999999999999997554
No 296
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.35 E-value=0.04 Score=49.98 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=24.0
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+| .++|+|++|+|||||+..+.
T Consensus 19 vs~~i~~g-~~~i~G~nGsGKSTLl~~l~ 46 (211)
T cd03264 19 VSLTLGPG-MYGLLGPNGAGKTTLMRILA 46 (211)
T ss_pred eeEEEcCC-cEEEECCCCCCHHHHHHHHh
Confidence 34678889 99999999999999997665
No 297
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.34 E-value=0.035 Score=52.77 Aligned_cols=28 Identities=32% Similarity=0.538 Sum_probs=23.9
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+..+.+|++++|.|++|+|||||+.-+.
T Consensus 20 i~~i~~Ge~~~IvG~nGsGKSTLlk~l~ 47 (255)
T cd03236 20 LPVPREGQVLGLVGPNGIGKSTALKILA 47 (255)
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHh
Confidence 3348899999999999999999997554
No 298
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.34 E-value=0.035 Score=57.52 Aligned_cols=31 Identities=26% Similarity=0.526 Sum_probs=26.3
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+-+|++++|.|++|+|||||+.-+..
T Consensus 353 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 353 GVSLDLPPGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3447899999999999999999999975543
No 299
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=94.33 E-value=0.041 Score=54.92 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=26.1
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+..|+
T Consensus 22 ~vsl~i~~Ge~~~llG~sGsGKSTLLr~ia 51 (356)
T PRK11650 22 GIDLDVADGEFIVLVGPSGCGKSTLLRMVA 51 (356)
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHH
Confidence 355789999999999999999999997554
No 300
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.33 E-value=0.045 Score=49.90 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=27.2
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.-
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 46 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAG 46 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhc
Confidence 5568899999999999999999999976653
No 301
>PRK08760 replicative DNA helicase; Provisional
Probab=94.33 E-value=0.054 Score=56.29 Aligned_cols=46 Identities=24% Similarity=0.218 Sum_probs=40.2
Q ss_pred ceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhh
Q 018957 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (348)
Q Consensus 208 e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~ 253 (348)
.-+.||+.-+|-++ -+.+|+=+.|-|.+|+|||+++.+++.+.+..
T Consensus 210 ~Gi~TG~~~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~ 256 (476)
T PRK08760 210 TGLPTGYNDFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIK 256 (476)
T ss_pred CcccCCcHHHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHh
Confidence 34789999999986 48889999999999999999999999988753
No 302
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=94.31 E-value=0.044 Score=50.43 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=26.0
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|+.++|.|++|+|||||+.-+..
T Consensus 26 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G 55 (226)
T cd03234 26 VSLHVESGQVMAILGSSGSGKTTLLDAISG 55 (226)
T ss_pred ceEEEcCCeEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999999999986653
No 303
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=94.31 E-value=0.043 Score=54.24 Aligned_cols=31 Identities=23% Similarity=0.494 Sum_probs=27.0
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|+.++|+|++|+|||||+..|+.
T Consensus 39 ~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~G 69 (331)
T PRK15079 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIG 69 (331)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4567899999999999999999999976653
No 304
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.31 E-value=0.045 Score=51.24 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=25.0
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+..+|.|++|+|||||+.-+.
T Consensus 26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 53 (253)
T PRK14261 26 TISIPKNRVTALIGPSGCGKSTLLRCFN 53 (253)
T ss_pred EEEECCCcEEEEECCCCCCHHHHHHHHh
Confidence 3688999999999999999999997664
No 305
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=94.30 E-value=0.047 Score=50.77 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=24.4
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+.+.+|+.++|.|++|+|||||+.-|.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 47 (237)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLLRIIA 47 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 579999999999999999999987554
No 306
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.29 E-value=0.042 Score=50.86 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=24.8
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T PRK11614 25 SLHINQGEIVTLIGANGAGKTTLLGTLC 52 (237)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 3788999999999999999999997554
No 307
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=94.26 E-value=0.045 Score=54.60 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=26.0
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+..|+
T Consensus 22 ~vs~~i~~Ge~~~l~GpsGsGKSTLLr~ia 51 (353)
T TIGR03265 22 DISLSVKKGEFVCLLGPSGCGKTTLLRIIA 51 (353)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 355788899999999999999999997554
No 308
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=94.24 E-value=0.045 Score=51.54 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=25.1
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 23 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 51 (262)
T PRK09984 23 VDLNIHHGEMVALLGPSGSGKSTLLRHLS 51 (262)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 34678899999999999999999997554
No 309
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.24 E-value=0.047 Score=50.88 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=24.9
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+..+|+|++|+|||||+.-+.
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (249)
T PRK14253 23 NLPIPARQVTALIGPSGCGKSTLLRCLN 50 (249)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999999997654
No 310
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.24 E-value=0.048 Score=50.87 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=25.8
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (246)
T PRK14269 20 DINMQIEQNKITALIGASGCGKSTFLRCFN 49 (246)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 444788899999999999999999997554
No 311
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.24 E-value=0.2 Score=51.65 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=23.1
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
.++..+.+.|++|+||||++..++...
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356679999999999999999998654
No 312
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.24 E-value=0.13 Score=49.60 Aligned_cols=96 Identities=21% Similarity=0.341 Sum_probs=50.3
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccc-----cCcccCCCeeEEEE
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIK-----LGDKQADSKCALVY 298 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~-----~~~~~~~~rtvvV~ 298 (348)
..|+-+++.|++|+|||+++.+.+.+. .+..+.+. -+=-....-...+.++.|..+-+ ++. ...++.++++
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~l--~~~~~~~~-~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP-~~~k~lv~fi 106 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSSL--DSDKYLVI-TINFSAQTTSNQLQKIIESKLEKRRGRVYGP-PGGKKLVLFI 106 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHCS--TTCCEEEE-EEES-TTHHHHHHHHCCCTTECECTTEEEEE-ESSSEEEEEE
T ss_pred HcCCcEEEECCCCCchhHHHHhhhccC--Ccccccee-EeeccCCCCHHHHHHHHhhcEEcCCCCCCCC-CCCcEEEEEe
Confidence 468889999999999999999887543 12232221 11112223333345555544322 111 1345778888
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHhhh
Q 018957 299 GQMNEPPGARARVGLTGLTVAEHFRD 324 (348)
Q Consensus 299 ~tsdep~~~r~~a~~~a~tiAEyfrd 324 (348)
---|.|..+.|-+-. .+.+=..+.|
T Consensus 107 DDlN~p~~d~ygtq~-~iElLRQ~i~ 131 (272)
T PF12775_consen 107 DDLNMPQPDKYGTQP-PIELLRQLID 131 (272)
T ss_dssp ETTT-S---TTS--H-HHHHHHHHHH
T ss_pred cccCCCCCCCCCCcC-HHHHHHHHHH
Confidence 888888877765544 2344444444
No 313
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.23 E-value=0.05 Score=52.62 Aligned_cols=48 Identities=29% Similarity=0.545 Sum_probs=35.7
Q ss_pred eeeee-ceeecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEE
Q 018957 214 IKVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG 262 (348)
Q Consensus 214 IkvID-~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~ 262 (348)
++++| .=+.|.+|..+||+|.+|+|||||...++. .-+...+-+.|-+
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~-L~~pt~G~i~f~g 74 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILG-LEEPTSGEILFEG 74 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHc-CcCCCCceEEEcC
Confidence 46666 668999999999999999999999876654 2232334555553
No 314
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.22 E-value=0.053 Score=46.96 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=26.8
Q ss_pred eeceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 217 ID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
-|.-+.+.+|+..+|.|++|+|||||+.-+..
T Consensus 16 ~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g 47 (157)
T cd00267 16 DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAG 47 (157)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34557788999999999999999999976543
No 315
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.22 E-value=0.046 Score=51.96 Aligned_cols=30 Identities=27% Similarity=0.498 Sum_probs=26.0
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+-+|+.++|.|++|+|||||+..+.-
T Consensus 32 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 61 (269)
T PRK14259 32 VFCDIPRGKVTALIGPSGCGKSTVLRSLNR 61 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 347899999999999999999999976653
No 316
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.22 E-value=0.046 Score=52.16 Aligned_cols=30 Identities=33% Similarity=0.380 Sum_probs=26.2
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|++++|.|++|+|||||+.-++
T Consensus 42 ~is~~i~~Ge~~~liG~NGsGKSTLlk~L~ 71 (264)
T PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIG 71 (264)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 455689999999999999999999997554
No 317
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.22 E-value=0.23 Score=52.59 Aligned_cols=32 Identities=44% Similarity=0.707 Sum_probs=27.5
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~ 252 (348)
-++.+|+.++|.|+.|+||||++..++...+.
T Consensus 345 ~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 345 DPLERGGVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45788999999999999999999988876544
No 318
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.21 E-value=0.043 Score=51.90 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=22.7
Q ss_pred eecccCceeEeecCCCCcHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIM 244 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~ 244 (348)
+.+.+|+.+.|+||+|+|||||+.
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLR 46 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLR 46 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHH
Confidence 579999999999999999999996
No 319
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=94.21 E-value=0.043 Score=54.13 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=27.6
Q ss_pred eeeec-eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 215 KVVDL-LAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 215 kvID~-l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+++|. =+.+.+|+.++|+|++|+|||||+.-++.
T Consensus 30 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~G 64 (330)
T PRK09473 30 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMG 64 (330)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence 34433 47899999999999999999999976653
No 320
>PHA02542 41 41 helicase; Provisional
Probab=94.21 E-value=0.052 Score=56.42 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=47.8
Q ss_pred cceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhH
Q 018957 207 QQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG 270 (348)
Q Consensus 207 ~e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv 270 (348)
..-+.||+.-+|-++ -+.+|+=+.|-|.+|+|||+++.+++.+.++. +.-++|.-.-++..++
T Consensus 169 ~~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~-g~~Vl~fSLEM~~~ql 233 (473)
T PHA02542 169 ANKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQ-GYNVLYISMEMAEEVI 233 (473)
T ss_pred CCccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEEeccCCHHHH
Confidence 356889999999998 48899999999999999999999999988743 2223344444444433
No 321
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.20 E-value=0.048 Score=52.46 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=26.2
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 57 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~ 86 (286)
T PRK14275 57 KVNADILSKYVTAIIGPSGCGKSTFLRAIN 86 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 455689999999999999999999997655
No 322
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.19 E-value=0.049 Score=50.31 Aligned_cols=30 Identities=37% Similarity=0.596 Sum_probs=25.6
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+-+|+.++|.|++|+|||||+.-++.
T Consensus 41 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G 70 (224)
T cd03220 41 VSFEVPRGERIGLIGRNGAGKSTLLRLLAG 70 (224)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 336899999999999999999999975543
No 323
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.19 E-value=0.05 Score=50.79 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=25.1
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 23 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 51 (251)
T PRK14251 23 ISLDFEEKELTALIGPSGCGKSTFLRCLN 51 (251)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34678899999999999999999997554
No 324
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.19 E-value=0.047 Score=52.58 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=26.2
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 24 ~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~ 53 (288)
T PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLN 53 (288)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHh
Confidence 555789999999999999999999997554
No 325
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.19 E-value=0.049 Score=51.80 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=25.7
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+..+|+|++|+|||||+.-+.
T Consensus 42 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~ 71 (269)
T cd03294 42 DVSLDVREGEIFVIMGLSGSGKSTLLRCIN 71 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344788999999999999999999997554
No 326
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=94.18 E-value=0.047 Score=52.31 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=25.7
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 19 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~la 48 (272)
T PRK13547 19 DLSLRIEPGRVTALLGRNGAGKSTLLKALA 48 (272)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 334679999999999999999999997554
No 327
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.17 E-value=0.05 Score=50.86 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=24.7
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|.|++|+|||||+.-++
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 51 (251)
T PRK14270 24 NLPIYENKITALIGPSGCGKSTFLRCLN 51 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3678899999999999999999997654
No 328
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=94.17 E-value=0.047 Score=53.76 Aligned_cols=30 Identities=23% Similarity=0.548 Sum_probs=26.3
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|+.++|+|++|+|||||+.-++.
T Consensus 26 vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~G 55 (326)
T PRK11022 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMG 55 (326)
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence 347999999999999999999999976654
No 329
>PRK05595 replicative DNA helicase; Provisional
Probab=94.17 E-value=0.064 Score=54.97 Aligned_cols=62 Identities=16% Similarity=0.270 Sum_probs=45.3
Q ss_pred ceeecceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchh
Q 018957 208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE 269 (348)
Q Consensus 208 e~l~TGIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rE 269 (348)
.-+.||+..+|-++- +.+|+=+.|-|.+|+|||+++.+++.+.+..++.-+.|.-.-+..++
T Consensus 182 ~gi~tg~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~ 244 (444)
T PRK05595 182 TGVASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQ 244 (444)
T ss_pred CcccCChHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHH
Confidence 357899999999864 77888888999999999999999998876433333333333333333
No 330
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=94.17 E-value=0.051 Score=51.53 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=26.1
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+-+|+.++|.|++|+|||||+.-+.-
T Consensus 37 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 67 (267)
T PRK14235 37 DVDLDIPEKTVTAFIGPSGCGKSTFLRCLNR 67 (267)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3446788999999999999999999976553
No 331
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=94.17 E-value=0.044 Score=51.08 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=25.1
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-|.
T Consensus 26 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 54 (252)
T CHL00131 26 LNLSINKGEIHAIMGPNGSGKSTLSKVIA 54 (252)
T ss_pred ceeEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 33678999999999999999999997544
No 332
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=94.15 E-value=0.048 Score=53.18 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=25.8
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 25 ~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~ 54 (305)
T PRK13651 25 NVSVEINQGEFIAIIGQTGSGKTTFIEHLN 54 (305)
T ss_pred eeEEEEeCCCEEEEECCCCCcHHHHHHHHh
Confidence 345789999999999999999999997554
No 333
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.15 E-value=0.049 Score=52.11 Aligned_cols=29 Identities=28% Similarity=0.612 Sum_probs=25.6
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~i 246 (348)
|.=+.+-+|.++||+|..|+|||||+.-+
T Consensus 45 disf~i~~Ge~vGiiG~NGaGKSTLlkli 73 (249)
T COG1134 45 DISFEIYKGERVGIIGHNGAGKSTLLKLI 73 (249)
T ss_pred CceEEEeCCCEEEEECCCCCcHHHHHHHH
Confidence 45678999999999999999999999643
No 334
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.15 E-value=0.05 Score=51.23 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=26.1
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|+.++|.|++|+|||||+.-++.
T Consensus 26 isl~i~~Ge~~~l~G~nGsGKSTLlk~l~G 55 (259)
T PRK14260 26 ISMDIYRNKVTAIIGPSGCGKSTFIKTLNR 55 (259)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 347889999999999999999999986654
No 335
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.14 E-value=0.05 Score=51.93 Aligned_cols=30 Identities=23% Similarity=0.332 Sum_probs=25.8
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 38 ~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~ 67 (274)
T PRK14265 38 DVHLKIPAKKIIAFIGPSGCGKSTLLRCFN 67 (274)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344678999999999999999999997554
No 336
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.13 E-value=0.046 Score=52.38 Aligned_cols=42 Identities=21% Similarity=0.412 Sum_probs=30.8
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEE
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 260 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~ 260 (348)
.=+.+-||.-.+|.||+|+|||||+..|+-...-.++.+-|+
T Consensus 27 v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~ 68 (263)
T COG1127 27 VDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILID 68 (263)
T ss_pred ceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEc
Confidence 346789999999999999999999986654332233345555
No 337
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=94.13 E-value=0.05 Score=51.03 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=24.4
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+.+.+|+..+|+|++|+|||||+.-+.
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 49 (255)
T PRK11231 23 LSLPTGKITALIGPNGCGKSTLLKCFA 49 (255)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 678999999999999999999997554
No 338
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.066 Score=56.53 Aligned_cols=30 Identities=33% Similarity=0.524 Sum_probs=26.3
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+++-+||++.|.|.+|+|||||+.-+.
T Consensus 339 ~l~~t~~~g~~talvG~SGaGKSTLl~lL~ 368 (559)
T COG4988 339 DLNLTIKAGQLTALVGASGAGKSTLLNLLL 368 (559)
T ss_pred CceeEecCCcEEEEECCCCCCHHHHHHHHh
Confidence 566789999999999999999999986544
No 339
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.12 E-value=0.26 Score=54.13 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=59.6
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccch----hHHHHHHHHHHcCccccCc--------ccC
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR----EGNDLYREMIESGVIKLGD--------KQA 290 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~r----Ev~~~~~e~~~~~v~~~~~--------~~~ 290 (348)
+.+|+-++++|+.|+||||++..++......++...|........| |-...|.++..-.+....+ +..
T Consensus 182 ~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~ 261 (767)
T PRK14723 182 LAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL 261 (767)
T ss_pred cCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh
Confidence 3468899999999999999999888655333332233333333333 3323333322111100000 012
Q ss_pred CCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhH
Q 018957 291 DSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFR 339 (348)
Q Consensus 291 ~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR 339 (348)
.++-+|++-|+-.++......-.... +.+ ...-.+++|++|..++
T Consensus 262 ~~~D~VLIDTAGRs~~d~~l~eel~~-l~~---~~~p~e~~LVLsAt~~ 306 (767)
T PRK14723 262 GDKHLVLIDTVGMSQRDRNVSEQIAM-LCG---VGRPVRRLLLLNAASH 306 (767)
T ss_pred cCCCEEEEeCCCCCccCHHHHHHHHH-Hhc---cCCCCeEEEEECCCCc
Confidence 34567888888766644332222111 111 1134578999988875
No 340
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.12 E-value=0.051 Score=51.87 Aligned_cols=27 Identities=33% Similarity=0.602 Sum_probs=24.6
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (274)
T PRK13647 26 LSIPEGSKTALLGPNGAGKSTLLLHLN 52 (274)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 689999999999999999999997554
No 341
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.11 E-value=0.052 Score=48.89 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=24.4
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+.+-+|+.++|.|++|+|||||+.-+.
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 54 (192)
T cd03232 28 GYVKPGTLTALMGESGAGKTTLLDVLA 54 (192)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 588899999999999999999997654
No 342
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.11 E-value=0.21 Score=51.52 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=23.9
Q ss_pred eeEeecCCCCcHHHHHHHHHHHHHhhcCCE-EEEE
Q 018957 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFA 261 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~~~-~V~~ 261 (348)
.+.|.|++|+|||.|++.+.+...+.+.+. ++|+
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv 177 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM 177 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 478999999999999987766443334444 3444
No 343
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.09 E-value=0.053 Score=50.69 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=25.1
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+..+|+|++|+|||||+.-++
T Consensus 23 ~s~~i~~G~~~~i~G~nGsGKSTLl~~l~ 51 (251)
T PRK14249 23 INMDFPERQITAIIGPSGCGKSTLLRALN 51 (251)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34578999999999999999999997554
No 344
>PRK08506 replicative DNA helicase; Provisional
Probab=94.08 E-value=0.056 Score=56.02 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=46.2
Q ss_pred ceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhH
Q 018957 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG 270 (348)
Q Consensus 208 e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv 270 (348)
.-+.||+.-+|-++ -+.+|+=+.|-|.+|+|||+++.+++.|.++. +.-++|.-.-....++
T Consensus 173 ~Gi~TG~~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~-g~~V~~fSlEMs~~ql 235 (472)
T PRK08506 173 IGLDTGFVELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQ-DKGVAFFSLEMPAEQL 235 (472)
T ss_pred CcccCChHHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhc-CCcEEEEeCcCCHHHH
Confidence 34889999999986 47789999999999999999999999987643 2223344444444443
No 345
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=94.08 E-value=0.054 Score=50.89 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=25.1
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-++
T Consensus 24 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~ 52 (257)
T PRK10619 24 VSLQANAGDVISIIGSSGSGKSTFLRCIN 52 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34678899999999999999999997554
No 346
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.07 E-value=0.053 Score=52.17 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=24.9
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 59 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~ 86 (285)
T PRK14254 59 SMDIPENQVTAMIGPSGCGKSTFLRCIN 86 (285)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3678999999999999999999997665
No 347
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=94.06 E-value=0.056 Score=49.50 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=25.3
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+..+|.|++|+|||||+.-+.
T Consensus 24 vs~~i~~G~~~~I~G~nGsGKStLl~~l~ 52 (220)
T TIGR02982 24 INLEINPGEIVILTGPSGSGKTTLLTLIG 52 (220)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34678899999999999999999997654
No 348
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.05 E-value=0.056 Score=49.31 Aligned_cols=29 Identities=31% Similarity=0.655 Sum_probs=25.3
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+..+|+|++|+|||||+.-+.
T Consensus 23 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 51 (221)
T cd03244 23 ISFSIKPGEKVGIVGRTGSGKSSLLLALF 51 (221)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHH
Confidence 34788899999999999999999997554
No 349
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.05 E-value=0.053 Score=51.73 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=26.0
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 20 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~ 49 (275)
T PRK13639 20 GINFKAEKGEMVALLGPNGAGKSTLFLHFN 49 (275)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344789999999999999999999997554
No 350
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.05 E-value=0.62 Score=44.11 Aligned_cols=107 Identities=24% Similarity=0.241 Sum_probs=60.7
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCC
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEP 304 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep 304 (348)
-|+=+.|.|+.|+|||.|+++++-.... .+..|....-|- .+.++++.|...+. ...+ .......+++...-+|
T Consensus 27 ~GsL~lIEGd~~tGKSvLsqr~~YG~L~--~g~~v~yvsTe~--T~refi~qm~sl~y-dv~~-~~l~G~l~~~~~~~~~ 100 (235)
T COG2874 27 VGSLILIEGDNGTGKSVLSQRFAYGFLM--NGYRVTYVSTEL--TVREFIKQMESLSY-DVSD-FLLSGRLLFFPVNLEP 100 (235)
T ss_pred cCeEEEEECCCCccHHHHHHHHHHHHHh--CCceEEEEEech--hHHHHHHHHHhcCC-CchH-HHhcceeEEEEecccc
Confidence 4788999999999999999999876654 366666655554 45667777766542 1111 1223344555432222
Q ss_pred HHH---HHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957 305 PGA---RARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (348)
Q Consensus 305 ~~~---r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A 341 (348)
.-. ..+.-+-= +.|+-+- .-+||+ ++||++-++
T Consensus 101 ~~~~~~~~~~~L~~--l~~~~k~-~~~dVi-IIDSls~~~ 136 (235)
T COG2874 101 VNWGRRSARKLLDL--LLEFIKR-WEKDVI-IIDSLSAFA 136 (235)
T ss_pred cccChHHHHHHHHH--HHhhHHh-hcCCEE-EEecccHHh
Confidence 211 11111111 2233332 345664 679998776
No 351
>PF13245 AAA_19: Part of AAA domain
Probab=94.04 E-value=0.075 Score=41.56 Aligned_cols=26 Identities=27% Similarity=0.426 Sum_probs=20.1
Q ss_pred Ccee-EeecCCCCcHHHHHHHHHHHHH
Q 018957 226 GGKI-GLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 226 GQr~-gIfg~~GvGKT~L~~~ii~n~a 251 (348)
|+++ .|-|++|+|||+++.+.+....
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444 4599999999988888887665
No 352
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.04 E-value=0.053 Score=52.23 Aligned_cols=31 Identities=32% Similarity=0.523 Sum_probs=27.0
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+-+|.-.+|+||.|+|||||+.-+..
T Consensus 20 ~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 20 DLSFSIPKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cceEEecCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999999999987654
No 353
>PRK07004 replicative DNA helicase; Provisional
Probab=94.03 E-value=0.077 Score=54.86 Aligned_cols=60 Identities=22% Similarity=0.139 Sum_probs=45.5
Q ss_pred ceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccc
Q 018957 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267 (348)
Q Consensus 208 e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~ 267 (348)
.-+.||++-+|-++ -+.+|+=+.|-|.+|+|||+++.+++.|.+..++.-++|.-.-...
T Consensus 194 ~gi~TG~~~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~ 254 (460)
T PRK07004 194 TGTPTGFVDLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPG 254 (460)
T ss_pred CCccCCcHHhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence 35789999999986 4889999999999999999999999988764333333343333333
No 354
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.03 E-value=0.054 Score=51.92 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=24.8
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+.+|+.++|+|++|+|||||+.-++
T Consensus 27 ~l~i~~Ge~~~I~G~nGaGKSTLl~~l~ 54 (282)
T PRK13640 27 SFSIPRGSWTALIGHNGSGKSTISKLIN 54 (282)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3578899999999999999999997654
No 355
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=94.03 E-value=0.054 Score=51.40 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=25.9
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 31 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~ 60 (267)
T PRK15112 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLA 60 (267)
T ss_pred eeeEEecCCCEEEEEcCCCCCHHHHHHHHh
Confidence 445788999999999999999999997554
No 356
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.03 E-value=0.094 Score=50.91 Aligned_cols=39 Identities=31% Similarity=0.454 Sum_probs=30.3
Q ss_pred ceeeee-ceeecccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957 213 GIKVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (348)
Q Consensus 213 GIkvID-~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~ 252 (348)
+-+++| .-++|-+|.-+.++|++|+||||++. ||++..+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLk-MINrLie 52 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLK-MINRLIE 52 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHH-HHhcccC
Confidence 334554 45789999999999999999999996 5665543
No 357
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.02 E-value=0.062 Score=48.92 Aligned_cols=29 Identities=24% Similarity=0.472 Sum_probs=26.5
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+ +.++|.|++|+|||||+..+.
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~ 44 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIA 44 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHh
Confidence 88899999 999999999999999997554
No 358
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.01 E-value=0.056 Score=51.06 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=26.3
Q ss_pred eeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 217 ID~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
-|.=+.+-+|+.++|+|++|+|||||+.-+.
T Consensus 33 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 63 (265)
T PRK14252 33 KNINMMVHEKQVTALIGPSGCGKSTFLRCFN 63 (265)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3455678899999999999999999997554
No 359
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.01 E-value=0.054 Score=52.46 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=25.5
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+..+|.|+.|+|||||+..+.
T Consensus 21 is~~i~~Gei~~l~G~NGaGKTTLl~~l~ 49 (301)
T TIGR03522 21 VSFEAQKGRIVGFLGPNGAGKSTTMKIIT 49 (301)
T ss_pred eEEEEeCCeEEEEECCCCCCHHHHHHHHh
Confidence 34778999999999999999999997654
No 360
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=0.072 Score=56.11 Aligned_cols=30 Identities=23% Similarity=0.489 Sum_probs=26.9
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
++|.+|.|++|.|++|+||||++..+.+-.
T Consensus 373 f~I~kGekVaIvG~nGsGKSTilr~LlrF~ 402 (591)
T KOG0057|consen 373 FTIPKGEKVAIVGSNGSGKSTILRLLLRFF 402 (591)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 789999999999999999999998776643
No 361
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.00 E-value=0.055 Score=52.55 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=26.2
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-|+
T Consensus 63 ~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~ 92 (305)
T PRK14264 63 GVSMDIPEKSVTALIGPSGCGKSTFLRCLN 92 (305)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 345788999999999999999999997665
No 362
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.98 E-value=0.056 Score=52.02 Aligned_cols=29 Identities=34% Similarity=0.537 Sum_probs=25.5
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|.|++|+|||||+..+.
T Consensus 26 vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~ 54 (287)
T PRK13637 26 VNIEIEDGEFVGLIGHTGSGKSTLIQHLN 54 (287)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 33788999999999999999999997654
No 363
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.97 E-value=0.055 Score=46.74 Aligned_cols=28 Identities=32% Similarity=0.601 Sum_probs=24.4
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+.+-+|+..+|.|++|+|||||+.-+..
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 5788999999999999999999975543
No 364
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.96 E-value=0.057 Score=51.69 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=26.2
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (279)
T PRK13650 25 DVSFHVKQGEWLSIIGHNGSGKSTTVRLID 54 (279)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 455789999999999999999999997554
No 365
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.95 E-value=0.05 Score=51.36 Aligned_cols=26 Identities=35% Similarity=0.592 Sum_probs=22.7
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.+.+|+.++|+|++|+|||||+.-+.
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~ 46 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLA 46 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHh
Confidence 36689999999999999999997554
No 366
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.94 E-value=0.06 Score=49.82 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=25.8
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|+..+|.|++|+|||||+.-+..
T Consensus 19 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g 48 (232)
T cd03300 19 VSLDIKEGEFFTLLGPSGCGKTTLLRLIAG 48 (232)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 347789999999999999999999976654
No 367
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.92 E-value=0.058 Score=52.12 Aligned_cols=30 Identities=27% Similarity=0.563 Sum_probs=26.0
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|++++|+|++|+|||||+.-|.
T Consensus 55 ~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~ 84 (282)
T cd03291 55 NINLKIEKGEMLAITGSTGSGKTSLLMLIL 84 (282)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 455688999999999999999999997554
No 368
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=93.92 E-value=0.054 Score=55.56 Aligned_cols=37 Identities=32% Similarity=0.628 Sum_probs=31.3
Q ss_pred eeeeece-eecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 214 IKVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 214 IkvID~l-~PigkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
++++|.+ +++.+||.+||.|.+|+|||||-..+.+=.
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~ 337 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI 337 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc
Confidence 5677655 799999999999999999999988777643
No 369
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=93.92 E-value=0.056 Score=54.49 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=26.1
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+..|+
T Consensus 32 ~vsl~i~~Ge~~~LlGpsGsGKSTLLr~Ia 61 (375)
T PRK09452 32 NLDLTINNGEFLTLLGPSGCGKTTVLRLIA 61 (375)
T ss_pred eeEEEEeCCCEEEEECCCCCcHHHHHHHHh
Confidence 355789999999999999999999997554
No 370
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.91 E-value=0.087 Score=49.94 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=25.6
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 26 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 55 (261)
T PRK14263 26 DSHVPIRKNEITGFIGPSGCGKSTVLRSLN 55 (261)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 345778999999999999999999997553
No 371
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.91 E-value=0.059 Score=51.44 Aligned_cols=31 Identities=29% Similarity=0.546 Sum_probs=26.5
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+-+|+.++|.|++|+|||||+.-+.-
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 50 (274)
T PRK13644 20 NINLVIKKGEYIGIIGKNGSGKSTLALHLNG 50 (274)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4447899999999999999999999976653
No 372
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=93.91 E-value=0.057 Score=53.80 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=25.4
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+..+|+|++|+|||||+.-+.
T Consensus 23 ~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~ 52 (343)
T TIGR02314 23 NVSLHVPAGQIYGVIGASGAGKSTLIRCVN 52 (343)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344689999999999999999999997443
No 373
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.89 E-value=0.46 Score=48.87 Aligned_cols=29 Identities=34% Similarity=0.530 Sum_probs=24.9
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
.+.+|++++++|+.|+||||++..++...
T Consensus 187 ~~~~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 187 IIEQGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998887543
No 374
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=93.88 E-value=0.072 Score=52.93 Aligned_cols=30 Identities=33% Similarity=0.443 Sum_probs=26.9
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+..+|+|++|+|||||+.-|+
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~ia 44 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIA 44 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 667889999999999999999999997554
No 375
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.88 E-value=0.054 Score=50.30 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=25.0
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
=+.+.+|+.++|.|++|+|||||+.-+.-
T Consensus 21 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (248)
T PRK09580 21 NLEVRPGEVHAIMGPNGSGKSTLSATLAG 49 (248)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 36788999999999999999999975543
No 376
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=93.88 E-value=0.057 Score=54.09 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=25.7
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+..|.
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLL~~ia 50 (369)
T PRK11000 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIA 50 (369)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 344688999999999999999999997554
No 377
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.86 E-value=0.06 Score=51.85 Aligned_cols=27 Identities=26% Similarity=0.517 Sum_probs=24.7
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+.|.+|+.++|+|++|+|||||+..+.
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (290)
T PRK13634 28 VSIPSGSYVAIIGHTGSGKSTLLQHLN 54 (290)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 689999999999999999999997665
No 378
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.85 E-value=0.72 Score=47.50 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=23.7
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
.++.+++|+|+.|+||||++..++....
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4568999999999999999998876543
No 379
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.85 E-value=0.055 Score=50.40 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=25.5
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
-+++-+||.++|+|..|+|||||+.+++
T Consensus 33 SFtL~~~QTlaiIG~NGSGKSTLakMla 60 (267)
T COG4167 33 SFTLREGQTLAIIGENGSGKSTLAKMLA 60 (267)
T ss_pred EEEecCCcEEEEEccCCCcHhHHHHHHh
Confidence 4789999999999999999999998764
No 380
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.84 E-value=0.064 Score=49.77 Aligned_cols=30 Identities=27% Similarity=0.503 Sum_probs=25.6
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+..+|.|++|+|||||+.-+.
T Consensus 17 ~is~~i~~Ge~~~i~G~nG~GKStLl~~l~ 46 (235)
T cd03299 17 NVSLEVERGDYFVILGPTGSGKSVLLETIA 46 (235)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 334788899999999999999999997554
No 381
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=93.80 E-value=0.061 Score=50.51 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=24.2
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 48 (256)
T TIGR03873 22 VTAPPGSLTGLLGPNGSGKSTLLRLLA 48 (256)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 678899999999999999999997554
No 382
>PRK07773 replicative DNA helicase; Validated
Probab=93.79 E-value=0.092 Score=58.51 Aligned_cols=62 Identities=18% Similarity=0.189 Sum_probs=48.2
Q ss_pred ceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchh
Q 018957 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE 269 (348)
Q Consensus 208 e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rE 269 (348)
..+.||+..+|-++ -+.+|+=+.|-|.+|+|||+++.+++.|.+..++.-+.|...-+..++
T Consensus 198 ~Gi~TG~~~LD~l~~Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~q 260 (886)
T PRK07773 198 RGVPTGFTELDAMTNGLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQ 260 (886)
T ss_pred CCccCChhHhccccCCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHH
Confidence 56899999999987 478999999999999999999999999987654333444444444443
No 383
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.79 E-value=0.067 Score=50.41 Aligned_cols=29 Identities=31% Similarity=0.552 Sum_probs=25.2
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
=+.+.+|+.++|+|++|+|||||+.-+.-
T Consensus 41 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 69 (257)
T cd03288 41 KAYIKPGQKVGICGRTGSGKSSLSLAFFR 69 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 36788999999999999999999976543
No 384
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.79 E-value=0.14 Score=43.14 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=19.1
Q ss_pred eEeecCCCCcHHHHHHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
+.|.|++|+|||+|+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999887654
No 385
>PRK05636 replicative DNA helicase; Provisional
Probab=93.77 E-value=0.11 Score=54.52 Aligned_cols=59 Identities=24% Similarity=0.276 Sum_probs=44.9
Q ss_pred ceeecceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccc
Q 018957 208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267 (348)
Q Consensus 208 e~l~TGIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~ 267 (348)
.-+.||+.-+|-++- +.+|+=+.|-|.+|+|||+++.+++.+.+..++. .|.....|=.
T Consensus 246 ~Gi~TG~~~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~-~v~~fSlEMs 305 (505)
T PRK05636 246 TGIPTGFKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNK-ASVIFSLEMS 305 (505)
T ss_pred CceecChHHHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCC-eEEEEEeeCC
Confidence 458999999999864 7788889999999999999999999887644433 3333344443
No 386
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=93.76 E-value=0.066 Score=50.92 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=25.7
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 43 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~la 72 (272)
T PRK14236 43 DISMRIPKNRVTAFIGPSGCGKSTLLRCFN 72 (272)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 334678899999999999999999997654
No 387
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.76 E-value=0.11 Score=49.72 Aligned_cols=57 Identities=23% Similarity=0.412 Sum_probs=37.2
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEE---eeccchhHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG---VGERTREGNDLYRE 276 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~---IGER~rEv~~~~~e 276 (348)
.=+.|-+|+-+.|+|++|+|||||+..+.. ......+-+.+-+ ++-++.|..++..+
T Consensus 23 Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng-l~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 23 VNLEINQGEMVAIIGPSGAGKSTLLRSLNG-LVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred EeEEeCCCcEEEEECCCCCcHHHHHHHHhc-ccCCCcceEEecccchhccchHHHHHHHHh
Confidence 336789999999999999999999976533 2111122233333 56667777654433
No 388
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.74 E-value=0.12 Score=46.06 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=34.7
Q ss_pred eEeecCCCCcHHHHHHHHHHHHH------hhcCCEEEEEEeeccchhHHHHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINNVA------KAHGGFSVFAGVGERTREGNDLYREMIE 279 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n~a------~~~~~~~V~~~IGER~rEv~~~~~e~~~ 279 (348)
..|-||+|+|||+++..++.... ....+- -+..+......+..+++.|.+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~-~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGK-KILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH-------HCCCSS--EEEEESSHHHHHHHHHHHHC
T ss_pred EEEECCCCCChHHHHHHHHHHhccchhhhhhhccc-cceeecCCchhHHHHHHHHHh
Confidence 57899999999999999888761 122222 333456777888888888877
No 389
>PRK10867 signal recognition particle protein; Provisional
Probab=93.73 E-value=0.71 Score=47.65 Aligned_cols=39 Identities=21% Similarity=0.182 Sum_probs=27.0
Q ss_pred CceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEee
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG 264 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IG 264 (348)
-..+.+.|.+|+||||++..++...++.++.-+.++.+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 356789999999999999999876644313333444444
No 390
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.69 E-value=0.069 Score=51.18 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=25.2
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|.|++|+|||||+.-++
T Consensus 26 vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~ 54 (279)
T PRK13635 26 VSFSVYEGEWVAIVGHNGSGKSTLAKLLN 54 (279)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 33788999999999999999999997554
No 391
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.68 E-value=0.92 Score=37.90 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=17.9
Q ss_pred eEeecCCCCcHHHHHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n 249 (348)
+.+.|++|+||||++..+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999887643
No 392
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.65 E-value=0.07 Score=50.37 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=26.2
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|+.++|+|++|+|||||+..+..
T Consensus 25 ~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~G 55 (261)
T PRK14258 25 GVSMEIYQSKVTAIIGPSGCGKSTFLKCLNR 55 (261)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3447789999999999999999999976553
No 393
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.65 E-value=0.15 Score=52.22 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=26.3
Q ss_pred ceeEeecCCCCcHHHHHHHHHHHHHhhcCCE-EEEEEe
Q 018957 227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAGV 263 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~-~V~~~I 263 (348)
.-+.|.|++|+|||+|+..+.+...+.+.+. ++|+-.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 4478999999999999988877654443344 455533
No 394
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=93.65 E-value=0.068 Score=52.95 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=25.6
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 23 ~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~ 52 (343)
T PRK11153 23 NVSLHIPAGEIFGVIGASGAGKSTLIRCIN 52 (343)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 334688999999999999999999997554
No 395
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.64 E-value=0.069 Score=50.51 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=25.3
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~i 246 (348)
|.=+.+.+|.-+.|.|++|+|||||+..+
T Consensus 23 ~v~l~i~~Ge~vaI~GpSGSGKSTLLnii 51 (226)
T COG1136 23 DVNLEIEAGEFVAIVGPSGSGKSTLLNLL 51 (226)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 45578999999999999999999999643
No 396
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=93.61 E-value=0.07 Score=52.96 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=27.2
Q ss_pred ee-eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 216 VV-DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 216 vI-D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
++ |.=+.+.+|+.++|.|+.|+|||||+..|.-
T Consensus 56 ~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~G 89 (340)
T PRK13536 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILG 89 (340)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 44 3346899999999999999999999976643
No 397
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.61 E-value=0.071 Score=51.32 Aligned_cols=28 Identities=29% Similarity=0.647 Sum_probs=25.4
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+.|.+|++++|+|++|+|||||+..+..
T Consensus 25 l~I~~Ge~~~IvG~nGsGKSTLl~~L~g 52 (275)
T cd03289 25 FSISPGQRVGLLGRTGSGKSTLLSAFLR 52 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 6899999999999999999999986654
No 398
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.60 E-value=0.069 Score=53.34 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=25.2
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+..|.-+.|+||+|||||||+..|+
T Consensus 22 i~l~i~~Gef~vllGPSGcGKSTlLr~IA 50 (338)
T COG3839 22 VNLDIEDGEFVVLLGPSGCGKSTLLRMIA 50 (338)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 44689999999999999999999997543
No 399
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=93.60 E-value=0.069 Score=52.02 Aligned_cols=30 Identities=40% Similarity=0.557 Sum_probs=25.8
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|+..+|.|+.|+|||||+..+..
T Consensus 26 vsl~i~~Gei~gllGpNGaGKSTLl~~l~G 55 (306)
T PRK13537 26 LSFHVQRGECFGLLGPNGAGKTTTLRMLLG 55 (306)
T ss_pred ceEEEeCCcEEEEECCCCCCHHHHHHHHhc
Confidence 347889999999999999999999976653
No 400
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=93.57 E-value=0.25 Score=50.30 Aligned_cols=21 Identities=29% Similarity=0.667 Sum_probs=17.6
Q ss_pred eEeecCCCCcHHHHHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n 249 (348)
+||+||+|||||.++..+++.
T Consensus 151 llL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 689999999999998766543
No 401
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=0.06 Score=56.56 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=26.3
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+++.+|+|+.|.|.+|+|||||++-+..
T Consensus 357 ~~l~l~~GEkvAIlG~SGsGKSTllqLl~~ 386 (573)
T COG4987 357 FNLTLAQGEKVAILGRSGSGKSTLLQLLAG 386 (573)
T ss_pred cceeecCCCeEEEECCCCCCHHHHHHHHHh
Confidence 347899999999999999999999986664
No 402
>PRK08727 hypothetical protein; Validated
Probab=93.56 E-value=0.13 Score=48.00 Aligned_cols=51 Identities=24% Similarity=0.247 Sum_probs=33.9
Q ss_pred ceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMI 278 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~ 278 (348)
+-+.|.|++|+|||.|+..+.+...+ ++-.++|.-..+..+...+.++.+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~l~ 92 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQ-AGRSSAYLPLQAAAGRLRDALEALE 92 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEeHHHhhhhHHHHHHHHh
Confidence 34899999999999999987765433 3334567766655544444444443
No 403
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=93.55 E-value=0.14 Score=46.01 Aligned_cols=41 Identities=27% Similarity=0.517 Sum_probs=27.8
Q ss_pred eeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhH
Q 018957 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG 270 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv 270 (348)
+.+|+|++|+|||.|++...-+. ..+.+.--.++.-+-|.|
T Consensus 10 kllIigDsgVGKssLl~rF~ddt--Fs~sYitTiGvDfkirTv 50 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDT--FSGSYITTIGVDFKIRTV 50 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhcc--cccceEEEeeeeEEEEEe
Confidence 56899999999999998665431 223455556666555554
No 404
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=93.55 E-value=0.067 Score=50.18 Aligned_cols=30 Identities=30% Similarity=0.482 Sum_probs=25.9
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|.|++|+|||||+.-++
T Consensus 14 ~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~ 43 (248)
T PRK03695 14 PLSAEVRAGEILHLVGPNGAGKSTLLARMA 43 (248)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 444688999999999999999999997554
No 405
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.55 E-value=0.069 Score=48.05 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=23.0
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
.+|+-++|.|++|+|||||+..++..
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999887654
No 406
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.54 E-value=0.074 Score=50.29 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=25.6
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 28 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~ia 57 (257)
T PRK14246 28 DITIKIPNNSIFGIMGPSGSGKSTLLKVLN 57 (257)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344678999999999999999999997554
No 407
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.53 E-value=0.067 Score=48.46 Aligned_cols=53 Identities=28% Similarity=0.439 Sum_probs=32.1
Q ss_pred eeEeecCCCCcHHHHHHHHHHHHHhhcC--CEEEEEEeeccchhHHHHHHHHHHcC
Q 018957 228 KIGLFGGAGVGKTVLIMELINNVAKAHG--GFSVFAGVGERTREGNDLYREMIESG 281 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~--~~~V~~~IGER~rEv~~~~~e~~~~~ 281 (348)
|+.|+|++|+||||++..+....---|= +...-..+-++ .|.....+.+.+.|
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~-t~lg~~~k~~i~~g 56 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAER-TELGEEIKKYIDKG 56 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccC-ChHHHHHHHHHHcC
Confidence 7899999999999999988765211111 12233444444 44444445555554
No 408
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.49 E-value=0.84 Score=47.04 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=29.6
Q ss_pred ceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG 270 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv 270 (348)
.-+.+.|.+|+||||++..++.......+.-+.++.+.-+....
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a 143 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAA 143 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHH
Confidence 35788999999999999999876432223345556666443333
No 409
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.47 E-value=0.17 Score=47.38 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=21.2
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
.+..+.|+|++|+|||+|+..+.+..
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999998776644
No 410
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.47 E-value=0.064 Score=47.19 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=20.8
Q ss_pred CceeEeecCCCCcHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|+.+.|.|++|+|||||+..++.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHc
Confidence 67899999999999999988765
No 411
>PRK08233 hypothetical protein; Provisional
Probab=93.46 E-value=0.076 Score=46.41 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.2
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
++.-++|.|++|+|||||+..++..
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 4567899999999999999888754
No 412
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.45 E-value=0.2 Score=46.62 Aligned_cols=35 Identities=34% Similarity=0.579 Sum_probs=26.7
Q ss_pred ceeEeecCCCCcHHHHHHHHHHHHHhhcCCE-EEEE
Q 018957 227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFA 261 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~-~V~~ 261 (348)
.-+-|+|++|+|||.|++.+.+...+.+++. ++|.
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~ 70 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL 70 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceee
Confidence 4578999999999999998887665555554 4554
No 413
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.45 E-value=0.069 Score=48.68 Aligned_cols=24 Identities=38% Similarity=0.648 Sum_probs=21.5
Q ss_pred cCceeEeecCCCCcHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+|..++|.|++|+|||||+..+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999987764
No 414
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.44 E-value=0.078 Score=52.35 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=26.0
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|++++|.|++|+|||||+.-+..
T Consensus 101 is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g 130 (329)
T PRK14257 101 LNLDIKRNKVTAFIGPSGCGKSTFLRNLNQ 130 (329)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 346788999999999999999999986654
No 415
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=93.44 E-value=0.078 Score=50.70 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=25.8
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|+.++|.|++|+|||||+.-+.-
T Consensus 29 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G 58 (280)
T PRK13633 29 VNLEVKKGEFLVILGRNGSGKSTIAKHMNA 58 (280)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 346788999999999999999999976653
No 416
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.44 E-value=0.079 Score=52.08 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=24.5
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 47 l~i~~Ge~~~I~G~nGsGKSTLl~~L~ 73 (320)
T PRK13631 47 YTFEKNKIYFIIGNSGSGKSTLVTHFN 73 (320)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 788999999999999999999997554
No 417
>PRK06893 DNA replication initiation factor; Validated
Probab=93.43 E-value=0.12 Score=48.27 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=20.5
Q ss_pred eeEeecCCCCcHHHHHHHHHHHHHh
Q 018957 228 KIGLFGGAGVGKTVLIMELINNVAK 252 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~a~ 252 (348)
.+.|+|++|+|||+|+..+++...+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999888765443
No 418
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.42 E-value=0.96 Score=46.44 Aligned_cols=29 Identities=38% Similarity=0.651 Sum_probs=25.0
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
+.+|..+.+.|+.|+||||++..++...+
T Consensus 218 ~~~~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 218 LKQGGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999998887654
No 419
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=93.41 E-value=0.079 Score=53.11 Aligned_cols=30 Identities=33% Similarity=0.555 Sum_probs=25.8
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+..+.
T Consensus 23 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia 52 (362)
T TIGR03258 23 DLSLEIEAGELLALIGKSGCGKTTLLRAIA 52 (362)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 344678899999999999999999997654
No 420
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.40 E-value=0.083 Score=50.45 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=26.2
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|+.++|.|++|+|||||+.-+..
T Consensus 22 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G 52 (277)
T PRK13652 22 NINFIAPRNSRIAVIGPNGAGKSTLFRHFNG 52 (277)
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3347889999999999999999999975543
No 421
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=93.39 E-value=0.07 Score=57.18 Aligned_cols=30 Identities=37% Similarity=0.581 Sum_probs=26.1
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|++++|+|+.|+|||||+.-|+
T Consensus 19 ~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~ 48 (638)
T PRK10636 19 NATATINPGQKVGLVGKNGCGKSTLLALLK 48 (638)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 444789999999999999999999997554
No 422
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=93.38 E-value=0.08 Score=53.38 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=25.4
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+..|+
T Consensus 38 vsl~i~~Ge~~~llGpsGsGKSTLLr~Ia 66 (377)
T PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLRMLA 66 (377)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 44788999999999999999999997554
No 423
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.37 E-value=0.083 Score=50.43 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=24.4
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+.+-+|+.++|.|++|+|||||+.-+.
T Consensus 28 l~i~~Ge~~~I~G~nGsGKSTLl~~l~ 54 (277)
T PRK13642 28 FSITKGEWVSIIGQNGSGKSTTARLID 54 (277)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 688899999999999999999997554
No 424
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=93.32 E-value=0.078 Score=55.05 Aligned_cols=31 Identities=29% Similarity=0.579 Sum_probs=26.7
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|++++|+|++|+|||||+..+.-
T Consensus 18 ~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~G 48 (520)
T TIGR03269 18 NISFTIEEGEVLGILGRSGAGKSVLMHVLRG 48 (520)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 3456899999999999999999999976654
No 425
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.32 E-value=0.31 Score=43.56 Aligned_cols=89 Identities=26% Similarity=0.267 Sum_probs=56.3
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCC
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEP 304 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep 304 (348)
||--+-|.|-+|+|||||+..+..... +.++.+|.+=|..-|.. | ..+ + .-.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~--~~g~~~~~LDgD~lR~~------l-~~d---l----------------~fs 52 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLF--ARGIKVYLLDGDNLRHG------L-NAD---L----------------GFS 52 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHH--HTTS-EEEEEHHHHCTT------T-TTT---------------------SS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEecCcchhhc------c-CCC---C----------------CCC
Confidence 566788999999999999998876542 23678888877532221 1 000 0 113
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHh
Q 018957 305 PGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (348)
Q Consensus 305 ~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~ 342 (348)
...|..-..-.-.+|.-|.+ +|..|++=.-+.++=.+
T Consensus 53 ~~dR~e~~rr~~~~A~ll~~-~G~ivIva~isp~~~~R 89 (156)
T PF01583_consen 53 KEDREENIRRIAEVAKLLAD-QGIIVIVAFISPYREDR 89 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTSEEEEE----SHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCCeEEEeeccCchHHH
Confidence 45677777777888899998 79988887777765433
No 426
>PRK08840 replicative DNA helicase; Provisional
Probab=93.28 E-value=0.12 Score=53.68 Aligned_cols=57 Identities=23% Similarity=0.145 Sum_probs=45.1
Q ss_pred ceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeec
Q 018957 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (348)
Q Consensus 208 e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGE 265 (348)
.-+.||+.-+|-++ -+.+|+=+.|-|.+|+|||+++.+++.|.+..+ +..|...--|
T Consensus 198 ~gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~-~~~v~~fSlE 255 (464)
T PRK08840 198 TGVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQ-DKPVLIFSLE 255 (464)
T ss_pred CCcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhC-CCeEEEEecc
Confidence 45899999999986 788999999999999999999999999887433 3344333444
No 427
>PLN03073 ABC transporter F family; Provisional
Probab=93.27 E-value=0.07 Score=58.15 Aligned_cols=30 Identities=30% Similarity=0.457 Sum_probs=26.8
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.|..|.|+||+|+.|+|||||+..|.
T Consensus 195 ~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~ 224 (718)
T PLN03073 195 DASVTLAFGRHYGLVGRNGTGKTTFLRYMA 224 (718)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHc
Confidence 556899999999999999999999998664
No 428
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=93.24 E-value=0.08 Score=55.49 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=25.9
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+-+||+++|.|++|+|||||+.-+..
T Consensus 361 ~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~g 391 (582)
T PRK11176 361 NINFKIPAGKTVALVGRSGSGKSTIANLLTR 391 (582)
T ss_pred CceEEeCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3446788999999999999999999975543
No 429
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=93.24 E-value=0.27 Score=48.61 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.4
Q ss_pred CceeEeecCCCCcHHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
++++.|+|++|+|||||+..+.+.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~ 185 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAV 185 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999999887753
No 430
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.22 E-value=0.091 Score=50.40 Aligned_cols=30 Identities=27% Similarity=0.529 Sum_probs=25.9
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 24 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~ 53 (283)
T PRK13636 24 GININIKKGEVTAILGGNGAGKSTLFQNLN 53 (283)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 444788999999999999999999997554
No 431
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.22 E-value=0.089 Score=46.39 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=20.8
Q ss_pred CceeEeecCCCCcHHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.+.|.|++|+|||||+..++..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999877654
No 432
>PRK06217 hypothetical protein; Validated
Probab=93.15 E-value=0.087 Score=47.08 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.6
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+||.|+|.+|+|||||+..+...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999988754
No 433
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=93.13 E-value=0.079 Score=56.65 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=25.8
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|++++|+|+.|+|||||+.-+.
T Consensus 21 ~is~~i~~Ge~v~LvG~NGsGKSTLLriia 50 (635)
T PRK11147 21 NAELHIEDNERVCLVGRNGAGKSTLMKILN 50 (635)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHc
Confidence 345788999999999999999999997544
No 434
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.10 E-value=0.16 Score=53.05 Aligned_cols=34 Identities=38% Similarity=0.611 Sum_probs=27.5
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcC
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHG 255 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~ 255 (348)
.+.+|+-++++|+.|+||||++..++......++
T Consensus 252 ~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G 285 (484)
T PRK06995 252 LLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHG 285 (484)
T ss_pred cccCCcEEEEECCCCccHHHHHHHHHHHHHHhcC
Confidence 3568999999999999999999999876543333
No 435
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.10 E-value=0.084 Score=55.45 Aligned_cols=30 Identities=37% Similarity=0.565 Sum_probs=25.9
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|++++|.|++|+|||||+.-+..
T Consensus 369 i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 337899999999999999999999976554
No 436
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=93.09 E-value=0.086 Score=56.83 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=26.3
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+-+|++++|.|++|+|||||+.-+..
T Consensus 492 ~isl~i~~G~~vaIvG~SGsGKSTLlklL~g 522 (708)
T TIGR01193 492 DISLTIKMNSKTTIVGMSGSGKSTLAKLLVG 522 (708)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3447899999999999999999999975543
No 437
>PF12846 AAA_10: AAA-like domain
Probab=93.07 E-value=0.21 Score=46.60 Aligned_cols=44 Identities=23% Similarity=0.408 Sum_probs=30.3
Q ss_pred eeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYR 275 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~ 275 (348)
-++|+|.+|+|||++++.++.+.......+.|| ....|...+.+
T Consensus 3 h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~----D~~g~~~~~~~ 46 (304)
T PF12846_consen 3 HTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIF----DPKGDYSPLAR 46 (304)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEE----cCCchHHHHHH
Confidence 368999999999999998887765543233344 55566655433
No 438
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=93.06 E-value=0.09 Score=54.77 Aligned_cols=29 Identities=28% Similarity=0.558 Sum_probs=25.5
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|++++|+|++|+|||||+.-+.
T Consensus 20 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~ 48 (530)
T PRK15064 20 ISVKFGGGNRYGLIGANGCGKSTFMKILG 48 (530)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999999999999997554
No 439
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=93.05 E-value=0.086 Score=54.52 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=25.8
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+..+.
T Consensus 22 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~ 51 (501)
T PRK10762 22 GAALNVYPGRVMALVGENGAGKSTMMKVLT 51 (501)
T ss_pred eeeEEEcCCeEEEEECCCCCCHHHHHHHHh
Confidence 345689999999999999999999997554
No 440
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=93.05 E-value=0.092 Score=52.75 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=26.4
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|+..+|+|++|+|||||+..+..
T Consensus 11 ~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~G 41 (363)
T TIGR01186 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNR 41 (363)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhC
Confidence 4447899999999999999999999975543
No 441
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.03 E-value=0.092 Score=48.44 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=23.0
Q ss_pred eecccCceeEeecCCCCcHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMEL 246 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~i 246 (348)
+-+.+|+.++|+|++|+|||||++-+
T Consensus 31 L~v~~Ge~vaiVG~SGSGKSTLl~vl 56 (228)
T COG4181 31 LVVKRGETVAIVGPSGSGKSTLLAVL 56 (228)
T ss_pred EEecCCceEEEEcCCCCcHHhHHHHH
Confidence 45789999999999999999998744
No 442
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.01 E-value=0.1 Score=49.51 Aligned_cols=29 Identities=31% Similarity=0.539 Sum_probs=25.9
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~i 246 (348)
|.-+.+.+|++++|+|++|+|||||+..+
T Consensus 22 ~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l 50 (235)
T COG1122 22 DVSLEIEKGERVLLIGPNGSGKSTLLKLL 50 (235)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 66678999999999999999999998744
No 443
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=92.96 E-value=0.093 Score=54.65 Aligned_cols=30 Identities=33% Similarity=0.626 Sum_probs=26.3
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.-+.+.+|++++|+|++|+|||||+.-+.
T Consensus 337 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~ 366 (530)
T PRK15064 337 NLNLLLEAGERLAIIGENGVGKTTLLRTLV 366 (530)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 355889999999999999999999997554
No 444
>PRK14530 adenylate kinase; Provisional
Probab=92.95 E-value=0.1 Score=47.82 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.5
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
.|-++.|+|++|+||||++..++..
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999887654
No 445
>PRK14531 adenylate kinase; Provisional
Probab=92.93 E-value=0.099 Score=46.77 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.3
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+|+.|+|++|+||||++..++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999877654
No 446
>PRK06904 replicative DNA helicase; Validated
Probab=92.93 E-value=0.13 Score=53.44 Aligned_cols=60 Identities=25% Similarity=0.164 Sum_probs=46.1
Q ss_pred ceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccch
Q 018957 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTR 268 (348)
Q Consensus 208 e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~r 268 (348)
.-+.||++-+|-++ -+.+|+=+.|=|.+|+|||+++.+++.|.+..+ +..|....-|=..
T Consensus 202 ~Gi~TG~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~-g~~Vl~fSlEMs~ 262 (472)
T PRK06904 202 TGVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMAS-EKPVLVFSLEMPA 262 (472)
T ss_pred CCccCChHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhc-CCeEEEEeccCCH
Confidence 45789999999984 688899999999999999999999999887543 3344444555433
No 447
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=92.92 E-value=0.096 Score=55.05 Aligned_cols=29 Identities=31% Similarity=0.581 Sum_probs=25.5
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|++++|.|++|+|||||+.-+.
T Consensus 26 vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~ 54 (556)
T PRK11819 26 ISLSFFPGAKIGVLGLNGAGKSTLLRIMA 54 (556)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 34789999999999999999999997554
No 448
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=92.91 E-value=0.19 Score=48.60 Aligned_cols=31 Identities=35% Similarity=0.587 Sum_probs=26.2
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHHHhh
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~ 253 (348)
+.+|+.++|.|+.|+||||++..++...+..
T Consensus 191 ~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 191 LEQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3578899999999999999999998766543
No 449
>PTZ00301 uridine kinase; Provisional
Probab=92.89 E-value=0.15 Score=47.32 Aligned_cols=22 Identities=32% Similarity=0.708 Sum_probs=19.2
Q ss_pred eEeecCCCCcHHHHHHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
+||-|++|+|||||+..+....
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHH
Confidence 7899999999999998877554
No 450
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=92.88 E-value=0.089 Score=56.67 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=25.8
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+-+|++++|.|++|+|||||+.-+..
T Consensus 498 isl~i~~Ge~vaIvG~sGsGKSTLlklL~g 527 (710)
T TIGR03796 498 FSLTLQPGQRVALVGGSGSGKSTIAKLVAG 527 (710)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 446789999999999999999999975553
No 451
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=92.88 E-value=0.096 Score=53.89 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=26.6
Q ss_pred eeec-eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 216 VVDL-LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 216 vID~-l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
++|- =+.+.+|+.++|+|++|+|||||+..+.
T Consensus 18 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~ 50 (490)
T PRK10938 18 TLQLPSLTLNAGDSWAFVGANGSGKSALARALA 50 (490)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4433 4789999999999999999999997554
No 452
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=92.87 E-value=0.18 Score=49.02 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=26.6
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
...+++..++|.|++|+|||||+..++....
T Consensus 29 ~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~ 59 (300)
T TIGR00750 29 PYTGNAHRVGITGTPGAGKSTLLEALGMELR 59 (300)
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999998887543
No 453
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.83 E-value=0.11 Score=47.14 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=23.1
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
.++..++|.|++|+|||||+..+....
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 477889999999999999998776543
No 454
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=92.83 E-value=0.097 Score=56.13 Aligned_cols=30 Identities=37% Similarity=0.592 Sum_probs=26.1
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|++++|+|+.|+|||||+..++-
T Consensus 331 isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 360 (638)
T PRK10636 331 IKLNLVPGSRIGLLGRNGAGKSTLIKLLAG 360 (638)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 446899999999999999999999976653
No 455
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=92.81 E-value=0.1 Score=53.09 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=25.5
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
=+.+.+|+.++|+|++|+|||||+..+..
T Consensus 23 s~~i~~Geiv~liGpNGaGKSTLLk~LaG 51 (402)
T PRK09536 23 DLSVREGSLVGLVGPNGAGKTTLLRAING 51 (402)
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhc
Confidence 36789999999999999999999986653
No 456
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.81 E-value=0.87 Score=45.41 Aligned_cols=29 Identities=31% Similarity=0.413 Sum_probs=24.1
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
-++.-+++|.|++|+|||||+..++....
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~ 81 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLI 81 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567899999999999999998876653
No 457
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=92.80 E-value=0.099 Score=54.43 Aligned_cols=31 Identities=26% Similarity=0.546 Sum_probs=26.2
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.-
T Consensus 27 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G 57 (529)
T PRK15134 27 DVSLQIEAGETLALVGESGSGKSVTALSILR 57 (529)
T ss_pred ceEEEEeCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3457788999999999999999999976543
No 458
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.78 E-value=0.15 Score=47.40 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=18.7
Q ss_pred eEeecCCCCcHHHHHHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
+||.|++|+|||||+..+....
T Consensus 2 igI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999998776543
No 459
>PRK06321 replicative DNA helicase; Provisional
Probab=92.78 E-value=0.15 Score=52.98 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=45.0
Q ss_pred ceeecceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccc
Q 018957 208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267 (348)
Q Consensus 208 e~l~TGIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~ 267 (348)
.-+.||+.-+|-++- +.+|+=+.|=|.+|+|||+++.+++.|.+..++.-+.|.-.-...
T Consensus 207 ~Gi~tG~~~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~ 267 (472)
T PRK06321 207 SGIPTHFIDLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTV 267 (472)
T ss_pred CccccCcHHHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 357899999999874 888999999999999999999999998864333223333333333
No 460
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.77 E-value=0.1 Score=55.11 Aligned_cols=31 Identities=35% Similarity=0.581 Sum_probs=26.8
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|+|++|+|+.|+|||||+.-++-
T Consensus 340 ~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g 370 (530)
T COG0488 340 DLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG 370 (530)
T ss_pred CceEEecCCCEEEEECCCCCCHHHHHHHHhh
Confidence 4557788999999999999999999986643
No 461
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=92.77 E-value=0.15 Score=46.35 Aligned_cols=34 Identities=29% Similarity=0.236 Sum_probs=28.3
Q ss_pred eeeeceeecccCce-eEeecCCCCcHHHHHHHHHH
Q 018957 215 KVVDLLAPYQRGGK-IGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 215 kvID~l~PigkGQr-~gIfg~~GvGKT~L~~~ii~ 248 (348)
..++.=+.+..|.| ++|.|+.|+|||||+..+..
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHH
Confidence 45666677888865 99999999999999987763
No 462
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=92.77 E-value=0.099 Score=53.92 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=25.4
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 20 isl~i~~Ge~~~liG~nGsGKSTLl~~i~ 48 (500)
T TIGR02633 20 IDLEVRPGECVGLCGENGAGKSTLMKILS 48 (500)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999999999999997554
No 463
>CHL00195 ycf46 Ycf46; Provisional
Probab=92.76 E-value=0.56 Score=49.10 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=18.5
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
-+++.|++|||||.++..++..
T Consensus 261 GILL~GPpGTGKTllAkaiA~e 282 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIAND 282 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3899999999999999766543
No 464
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.75 E-value=0.94 Score=40.22 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=23.1
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
.+|-.+.|.|.+|+||||++..+....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567888999999999999998887654
No 465
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=92.71 E-value=0.42 Score=53.50 Aligned_cols=59 Identities=22% Similarity=0.330 Sum_probs=40.7
Q ss_pred eeeceeecccCceeEeecCCCCcHHHHHHHHHHHHH--hhcCCEEEEEEeeccchhHHHHHHH
Q 018957 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGFSVFAGVGERTREGNDLYRE 276 (348)
Q Consensus 216 vID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a--~~~~~~~V~~~IGER~rEv~~~~~e 276 (348)
+.+.|....- |-++|+|-.|+|||||+.++-+... +.+-|+.+.+.+++ .-.+.+++.+
T Consensus 170 l~~~L~~d~~-~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk-~f~~~~iq~~ 230 (889)
T KOG4658|consen 170 LWNRLMEDDV-GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSK-EFTTRKIQQT 230 (889)
T ss_pred HHHHhccCCC-CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcc-cccHHhHHHH
Confidence 3344444444 9999999999999999998776542 34457888888887 3334444444
No 466
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=92.70 E-value=0.1 Score=54.89 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=26.4
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+-+||+++|.|++|+|||||+.-+..
T Consensus 359 ~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~g 389 (592)
T PRK10790 359 NINLSVPSRGFVALVGHTGSGKSTLASLLMG 389 (592)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4457899999999999999999999875543
No 467
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=92.69 E-value=0.11 Score=55.60 Aligned_cols=31 Identities=32% Similarity=0.607 Sum_probs=26.9
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|+.++|+|++|+|||||+..+.-
T Consensus 34 ~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~G 64 (623)
T PRK10261 34 NLSFSLQRGETLAIVGESGSGKSVTALALMR 64 (623)
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHc
Confidence 4557899999999999999999999986653
No 468
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=92.68 E-value=0.094 Score=44.05 Aligned_cols=22 Identities=45% Similarity=0.813 Sum_probs=19.9
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.++|++|+|||+|+..++.+
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999888764
No 469
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.66 E-value=0.11 Score=46.59 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=20.9
Q ss_pred cCceeEeecCCCCcHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.|+.+.|.|++|+|||||+..+..
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 378899999999999999987754
No 470
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=92.65 E-value=0.11 Score=54.71 Aligned_cols=30 Identities=23% Similarity=0.435 Sum_probs=25.8
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+-+|++++|.|++|+|||||+.-+..
T Consensus 334 i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g 363 (569)
T PRK10789 334 VNFTLKPGQMLGICGPTGSGKSTLLSLIQR 363 (569)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 346789999999999999999999976554
No 471
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=92.63 E-value=0.11 Score=55.80 Aligned_cols=31 Identities=26% Similarity=0.481 Sum_probs=26.2
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+-+|++++|.|++|+|||||+.-+..
T Consensus 471 ~isl~i~~Ge~vaIvG~sGsGKSTLlklL~g 501 (686)
T TIGR03797 471 DVSLQIEPGEFVAIVGPSGSGKSTLLRLLLG 501 (686)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3447899999999999999999999975543
No 472
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=92.62 E-value=0.11 Score=42.43 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=19.3
Q ss_pred eeEeecCCCCcHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~ 248 (348)
|++|+|.+|+|||||+..+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999988875
No 473
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=92.57 E-value=0.11 Score=53.84 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=25.7
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+..++
T Consensus 282 isl~i~~Ge~~~l~G~NGsGKSTLlk~i~ 310 (510)
T PRK09700 282 ISFSVCRGEILGFAGLVGSGRTELMNCLF 310 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 44689999999999999999999997665
No 474
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=92.57 E-value=0.11 Score=55.99 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=25.7
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+-+|++++|.|++|+|||||+.-+.
T Consensus 483 ~i~l~i~~G~~iaIvG~sGsGKSTLlklL~ 512 (694)
T TIGR03375 483 NVSLTIRPGEKVAIIGRIGSGKSTLLKLLL 512 (694)
T ss_pred eeeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 444778899999999999999999997554
No 475
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=92.55 E-value=0.2 Score=45.55 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=23.0
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
...+.-+.|.|++|||||+|+..+.+..
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3456778999999999999998877653
No 476
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.54 E-value=0.13 Score=46.75 Aligned_cols=29 Identities=17% Similarity=0.109 Sum_probs=24.5
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
.+.+|.++.|.|+.|+||||++..+..++
T Consensus 25 ~l~~~~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 25 NLGSGRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred EEcCCeEEEEECCCCCccHHHHHHHHHHH
Confidence 45578999999999999999998887443
No 477
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=92.49 E-value=0.11 Score=55.49 Aligned_cols=29 Identities=45% Similarity=0.685 Sum_probs=25.5
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|++++|.|+.|+|||||+..++
T Consensus 338 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~ 366 (635)
T PRK11147 338 FSAQVQRGDKIALIGPNGCGKTTLLKLML 366 (635)
T ss_pred cEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 34689999999999999999999997655
No 478
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.48 E-value=0.21 Score=43.34 Aligned_cols=52 Identities=27% Similarity=0.425 Sum_probs=33.5
Q ss_pred eeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeec----cchhHHHHHHHHHHcC
Q 018957 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE----RTREGNDLYREMIESG 281 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGE----R~rEv~~~~~e~~~~~ 281 (348)
++.|+|+.++|||||+..+++...+..-.+.++.=.+. -..+..|-++ | +.|
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~~d~pG~Dt~r-~-~aG 57 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFEIDPPGTDTWR-F-KAG 57 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTTCSTTCHHHHH-H-HCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccCCCcccCCCCccccc-c-ccc
Confidence 57899999999999999999876543223445554444 2245555444 4 666
No 479
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.47 E-value=0.11 Score=56.64 Aligned_cols=30 Identities=30% Similarity=0.526 Sum_probs=25.7
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.|-.||+++|+|.+|+|||||+.-+..
T Consensus 492 isL~I~~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 492 LSLEIPPGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred eeEEeCCCCEEEEECCCCCCHHHHHHHHhc
Confidence 336789999999999999999999986543
No 480
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=92.46 E-value=0.11 Score=53.68 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=25.3
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+..+.
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (506)
T PRK13549 24 VSLKVRAGEIVSLCGENGAGKSTLMKVLS 52 (506)
T ss_pred eeEEEeCCeEEEEECCCCCCHHHHHHHHh
Confidence 34678999999999999999999997554
No 481
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=92.42 E-value=0.12 Score=52.54 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=25.9
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|+.++|+|++|+|||||+..+..
T Consensus 46 ~isl~i~~Gei~~LvG~NGsGKSTLLr~I~G 76 (400)
T PRK10070 46 DASLAIEEGEIFVIMGLSGSGKSTMVRLLNR 76 (400)
T ss_pred eEEEEEcCCCEEEEECCCCchHHHHHHHHHc
Confidence 3445788999999999999999999975543
No 482
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=92.40 E-value=0.11 Score=53.48 Aligned_cols=33 Identities=36% Similarity=0.565 Sum_probs=27.6
Q ss_pred eeee-ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 215 KVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 215 kvID-~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
++++ .=+.+.+|+.++|+|++|+|||||+..++
T Consensus 274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~ 307 (500)
T TIGR02633 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALF 307 (500)
T ss_pred cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHh
Confidence 3453 44689999999999999999999998665
No 483
>PHA00729 NTP-binding motif containing protein
Probab=92.36 E-value=0.061 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.5
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
..+.|+|.+|||||+|+..+++.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988764
No 484
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=92.35 E-value=0.13 Score=53.83 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=25.6
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
=+.+-+|++++|.|++|+|||||+.-+..
T Consensus 360 nl~i~~Ge~i~IvG~sGsGKSTLlklL~g 388 (576)
T TIGR02204 360 NLTVRPGETVALVGPSGAGKSTLFQLLLR 388 (576)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence 37899999999999999999999975553
No 485
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.35 E-value=0.15 Score=45.79 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=20.2
Q ss_pred eeEeecCCCCcHHHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
++.|-|++|+|||||+..++....
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhh
Confidence 578999999999999999987653
No 486
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=92.33 E-value=0.13 Score=53.88 Aligned_cols=30 Identities=37% Similarity=0.531 Sum_probs=25.3
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+-+|++++|.|++|+|||||+.-+.
T Consensus 341 ~i~~~i~~G~~~aivG~sGsGKSTL~~ll~ 370 (547)
T PRK10522 341 PINLTIKRGELLFLIGGNGSGKSTLAMLLT 370 (547)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344678899999999999999999996554
No 487
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=92.31 E-value=0.13 Score=53.88 Aligned_cols=30 Identities=30% Similarity=0.537 Sum_probs=25.3
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+-+|++++|.|++|+|||||+.-+.+
T Consensus 348 is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r 377 (567)
T COG1132 348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLR 377 (567)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 345599999999999999999999875544
No 488
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=92.30 E-value=0.18 Score=48.45 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.8
Q ss_pred eEeecCCCCcHHHHHHHHHHHHHh
Q 018957 229 IGLFGGAGVGKTVLIMELINNVAK 252 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n~a~ 252 (348)
.+|+|++|+|||||+.+++++.+.
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~ 163 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSD 163 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhc
Confidence 589999999999999999998764
No 489
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.29 E-value=0.22 Score=44.78 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=19.6
Q ss_pred eEeecCCCCcHHHHHHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
++|-|++|+|||||+..++...
T Consensus 2 i~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999888665
No 490
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=92.26 E-value=0.12 Score=45.67 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.1
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+||||++..++..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999877653
No 491
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=92.26 E-value=0.12 Score=53.42 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=25.9
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 23 ~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~ 52 (510)
T PRK09700 23 SVNLTVYPGEIHALLGENGAGKSTLMKVLS 52 (510)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 445788999999999999999999997554
No 492
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=92.26 E-value=0.14 Score=53.25 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=26.9
Q ss_pred eee-ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 216 VVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 216 vID-~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
++| .=+.+.+|+.++|+|++|+|||||+..+.
T Consensus 299 il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~ 331 (520)
T TIGR03269 299 AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIA 331 (520)
T ss_pred EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 444 44689999999999999999999997554
No 493
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=92.24 E-value=0.13 Score=53.94 Aligned_cols=30 Identities=33% Similarity=0.614 Sum_probs=26.0
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|++++|.|++|+|||||+..+.
T Consensus 23 ~is~~i~~Ge~~~liG~NGsGKSTLl~~i~ 52 (552)
T TIGR03719 23 DISLSFFPGAKIGVLGLNGAGKSTLLRIMA 52 (552)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 344789999999999999999999997554
No 494
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=92.21 E-value=0.13 Score=53.27 Aligned_cols=30 Identities=27% Similarity=0.496 Sum_probs=25.6
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|++++|.|++|+|||||+.-+..
T Consensus 341 i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g 370 (529)
T TIGR02857 341 VSFTVPPGERVALVGPSGAGKSTLLNLLLG 370 (529)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 346789999999999999999999975543
No 495
>PRK08006 replicative DNA helicase; Provisional
Probab=92.21 E-value=0.21 Score=51.96 Aligned_cols=57 Identities=23% Similarity=0.137 Sum_probs=44.3
Q ss_pred ceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeec
Q 018957 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (348)
Q Consensus 208 e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGE 265 (348)
.-+.||+.-+|-++ -+.+|+=+.|=|.+|.|||+++.+++.|.+..+ +..|....-|
T Consensus 205 ~Gi~TG~~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~-g~~V~~fSlE 262 (471)
T PRK08006 205 TGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQ-DKPVLIFSLE 262 (471)
T ss_pred CcccCCCHHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCeEEEEecc
Confidence 34899999999964 788899999999999999999999999987433 3333333444
No 496
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=92.20 E-value=0.12 Score=44.47 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=22.2
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+-.+--|++|+|++|+|||+|+..+..
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~ 36 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLAS 36 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhc
Confidence 334456899999999999999987765
No 497
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=92.20 E-value=1 Score=41.25 Aligned_cols=23 Identities=48% Similarity=0.690 Sum_probs=20.4
Q ss_pred eeEeecCCCCcHHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
+++|.|+.|+|||||+..++...
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 78999999999999998887654
No 498
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=92.18 E-value=0.13 Score=53.03 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=25.3
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 17 vs~~i~~Ge~~~liG~nGsGKSTLl~~l~ 45 (491)
T PRK10982 17 VNLKVRPHSIHALMGENGAGKSTLLKCLF 45 (491)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHc
Confidence 44678999999999999999999997554
No 499
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.18 E-value=0.26 Score=43.38 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.0
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
+|.-+.|.|.+|+||||++..+....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 68889999999999999999887654
No 500
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=92.13 E-value=0.14 Score=53.49 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=26.5
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+|++++|+|++|+|||||+.-+..
T Consensus 336 ~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g 366 (544)
T TIGR01842 336 GISFRLQAGEALAIIGPSGSGKSTLARLIVG 366 (544)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4457888999999999999999999976554
Done!