Query 018957
Match_columns 348
No_of_seqs 245 out of 1942
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 08:40:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018957.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018957hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ck3_D ATP synthase subunit be 100.0 2.2E-70 7.5E-75 555.0 27.1 264 82-347 9-272 (482)
2 1fx0_B ATP synthase beta chain 100.0 1.3E-70 4.6E-75 558.4 24.2 260 86-347 19-285 (498)
3 3oaa_A ATP synthase subunit al 100.0 5.5E-67 1.9E-71 531.7 24.4 249 84-347 25-273 (513)
4 2ck3_A ATP synthase subunit al 100.0 1.6E-66 5.6E-71 529.7 24.1 248 86-347 27-281 (510)
5 2qe7_A ATP synthase subunit al 100.0 1.8E-66 6.3E-71 528.5 23.9 246 86-347 27-273 (502)
6 2r9v_A ATP synthase subunit al 100.0 6.8E-66 2.3E-70 524.8 22.7 246 86-347 39-286 (515)
7 3vr4_D V-type sodium ATPase su 100.0 1.9E-65 6.5E-70 516.6 24.9 250 85-347 10-267 (465)
8 1fx0_A ATP synthase alpha chai 100.0 3E-66 1E-70 527.4 17.6 246 86-347 28-274 (507)
9 2c61_A A-type ATP synthase non 100.0 1.2E-65 4.2E-70 519.7 19.5 253 85-347 12-268 (469)
10 3gqb_B V-type ATP synthase bet 100.0 4.7E-65 1.6E-69 513.6 23.4 250 85-347 6-270 (464)
11 1sky_E F1-ATPase, F1-ATP synth 100.0 1.1E-61 3.7E-66 491.6 26.6 254 86-347 2-264 (473)
12 3vr4_A V-type sodium ATPase ca 100.0 1.8E-61 6.2E-66 497.1 22.6 251 87-347 10-348 (600)
13 3gqb_A V-type ATP synthase alp 100.0 2.7E-61 9.3E-66 494.1 19.3 251 87-347 3-337 (578)
14 3mfy_A V-type ATP synthase alp 100.0 2.1E-61 7.3E-66 495.1 10.3 251 86-347 3-343 (588)
15 3l0o_A Transcription terminati 100.0 3.8E-44 1.3E-48 355.5 10.0 183 144-347 96-281 (427)
16 2dpy_A FLII, flagellum-specifi 100.0 2.3E-41 7.8E-46 340.5 20.2 247 86-347 9-266 (438)
17 3ice_A Transcription terminati 100.0 6E-40 2.1E-44 325.8 12.7 183 144-347 92-280 (422)
18 2obl_A ESCN; ATPase, hydrolase 100.0 2E-36 6.8E-41 296.2 12.5 177 158-347 2-179 (347)
19 3io5_A Recombination and repai 97.8 3E-05 1E-09 75.4 7.8 111 208-341 5-124 (333)
20 1pyv_A ATP synthase beta chain 97.8 8.1E-06 2.8E-10 56.9 2.3 51 1-51 1-54 (54)
21 2zts_A Putative uncharacterize 97.8 2.1E-05 7.2E-10 70.1 5.1 64 208-271 10-75 (251)
22 1n0w_A DNA repair protein RAD5 97.7 8.1E-05 2.8E-09 66.2 8.3 43 208-250 4-48 (243)
23 2w0m_A SSO2452; RECA, SSPF, un 97.6 4.2E-05 1.4E-09 67.1 5.0 61 208-269 3-65 (235)
24 2ehv_A Hypothetical protein PH 97.6 5.2E-05 1.8E-09 67.6 5.1 45 207-251 9-55 (251)
25 1v5w_A DMC1, meiotic recombina 97.6 0.00025 8.6E-09 68.3 10.1 59 207-265 101-166 (343)
26 4a74_A DNA repair and recombin 97.6 0.00021 7.3E-09 62.8 8.7 43 208-250 5-49 (231)
27 2zr9_A Protein RECA, recombina 97.6 0.00018 6.2E-09 69.9 8.9 111 207-341 39-152 (349)
28 3hr8_A Protein RECA; alpha and 97.6 0.00016 5.4E-09 70.8 8.3 55 207-262 39-96 (356)
29 2z43_A DNA repair and recombin 97.5 0.00029 1E-08 67.0 9.8 125 206-343 85-218 (324)
30 2dr3_A UPF0273 protein PH0284; 97.4 8.6E-05 3E-09 66.0 4.4 61 208-269 3-65 (247)
31 2cvh_A DNA repair and recombin 97.4 9.3E-05 3.2E-09 64.8 3.9 51 210-264 2-54 (220)
32 1xp8_A RECA protein, recombina 97.4 0.00036 1.2E-08 68.4 8.4 111 207-341 52-165 (366)
33 1u94_A RECA protein, recombina 97.4 0.00038 1.3E-08 67.9 8.4 111 207-341 41-154 (356)
34 2i1q_A DNA repair and recombin 97.3 0.00053 1.8E-08 64.7 8.7 46 205-250 75-122 (322)
35 3lda_A DNA repair protein RAD5 97.3 0.00049 1.7E-08 68.2 8.4 50 202-251 152-203 (400)
36 1pzn_A RAD51, DNA repair and r 97.2 0.00095 3.2E-08 64.6 9.0 49 202-250 105-155 (349)
37 3cmw_A Protein RECA, recombina 97.0 0.00088 3E-08 77.1 7.4 114 205-342 10-126 (1706)
38 1cr0_A DNA primase/helicase; R 96.9 0.00078 2.7E-08 62.6 4.6 54 208-261 15-70 (296)
39 1nlf_A Regulatory protein REPA 96.7 0.0016 5.6E-08 60.0 5.6 47 206-252 9-56 (279)
40 3bs4_A Uncharacterized protein 96.7 0.013 4.5E-07 54.8 11.6 69 209-281 2-72 (260)
41 3cmu_A Protein RECA, recombina 96.7 0.0028 9.7E-08 73.9 8.1 116 203-342 8-126 (2050)
42 2v1u_A Cell division control p 96.6 0.0083 2.9E-07 56.3 9.6 99 224-343 42-145 (387)
43 3bh0_A DNAB-like replicative h 96.6 0.0018 6.2E-08 61.4 4.8 61 208-269 49-110 (315)
44 3cmu_A Protein RECA, recombina 96.5 0.0024 8.2E-08 74.5 5.9 113 205-341 1403-1518(2050)
45 2r6a_A DNAB helicase, replicat 96.4 0.0021 7.2E-08 64.0 4.5 58 208-265 184-242 (454)
46 3cmw_A Protein RECA, recombina 96.4 0.0047 1.6E-07 71.2 7.7 111 207-341 361-474 (1706)
47 2qby_A CDC6 homolog 1, cell di 96.2 0.021 7.1E-07 53.4 10.0 98 224-342 43-142 (386)
48 2q6t_A DNAB replication FORK h 96.2 0.003 1E-07 62.7 4.2 56 208-263 181-237 (444)
49 3ec2_A DNA replication protein 96.2 0.0037 1.3E-07 53.4 4.3 40 222-261 34-73 (180)
50 1zp6_A Hypothetical protein AT 96.1 0.0032 1.1E-07 53.9 3.3 29 220-248 3-31 (191)
51 3bgw_A DNAB-like replicative h 96.0 0.0049 1.7E-07 61.6 4.5 63 207-270 177-240 (444)
52 2a5y_B CED-4; apoptosis; HET: 95.9 0.012 4.1E-07 59.7 7.1 55 226-280 152-210 (549)
53 1q57_A DNA primase/helicase; d 95.9 0.004 1.4E-07 62.6 3.3 64 207-270 221-286 (503)
54 4a1f_A DNAB helicase, replicat 95.9 0.0045 1.5E-07 60.1 3.5 59 207-267 26-85 (338)
55 1w5s_A Origin recognition comp 95.8 0.024 8.1E-07 54.0 8.6 97 225-342 49-152 (412)
56 1tf7_A KAIC; homohexamer, hexa 95.7 0.006 2E-07 61.8 4.1 57 208-266 19-78 (525)
57 3tr0_A Guanylate kinase, GMP k 95.7 0.0061 2.1E-07 52.6 3.6 26 223-248 4-29 (205)
58 1fnn_A CDC6P, cell division co 95.7 0.037 1.3E-06 52.1 9.2 52 225-278 41-95 (389)
59 1z6g_A Guanylate kinase; struc 95.7 0.0056 1.9E-07 54.7 3.3 30 220-249 17-46 (218)
60 1znw_A Guanylate kinase, GMP k 95.7 0.0065 2.2E-07 53.5 3.5 27 222-248 16-42 (207)
61 1z6t_A APAF-1, apoptotic prote 95.7 0.018 6.3E-07 58.1 7.3 42 225-266 146-190 (591)
62 4eun_A Thermoresistant glucoki 95.6 0.0074 2.5E-07 52.7 3.7 40 210-249 13-52 (200)
63 2vhj_A Ntpase P4, P4; non- hyd 95.5 0.01 3.4E-07 57.7 4.6 43 207-249 103-146 (331)
64 2z4s_A Chromosomal replication 95.5 0.013 4.3E-07 58.3 5.3 37 226-262 130-167 (440)
65 1l8q_A Chromosomal replication 95.3 0.016 5.5E-07 54.2 5.2 38 225-263 36-73 (324)
66 2yhs_A FTSY, cell division pro 95.3 0.1 3.5E-06 53.3 11.4 31 221-251 288-318 (503)
67 4gp7_A Metallophosphoesterase; 95.3 0.01 3.4E-07 50.9 3.4 25 221-245 4-28 (171)
68 3tif_A Uncharacterized ABC tra 95.3 0.012 4.1E-07 53.6 4.0 29 219-247 24-52 (235)
69 2cbz_A Multidrug resistance-as 95.2 0.013 4.6E-07 53.4 4.0 29 219-247 24-52 (237)
70 3c8u_A Fructokinase; YP_612366 95.2 0.011 3.6E-07 52.1 3.2 28 223-250 19-46 (208)
71 1htw_A HI0065; nucleotide-bind 95.1 0.012 4.1E-07 50.6 3.4 30 221-250 28-57 (158)
72 2j41_A Guanylate kinase; GMP, 95.1 0.014 4.8E-07 50.3 3.8 27 222-248 2-28 (207)
73 2pcj_A ABC transporter, lipopr 95.1 0.013 4.4E-07 53.0 3.6 28 219-246 23-50 (224)
74 2ff7_A Alpha-hemolysin translo 95.1 0.014 4.8E-07 53.6 3.9 29 219-247 28-56 (247)
75 2d2e_A SUFC protein; ABC-ATPas 95.0 0.016 5.3E-07 53.3 4.0 29 219-247 22-50 (250)
76 1b0u_A Histidine permease; ABC 95.0 0.014 4.6E-07 54.2 3.6 29 219-247 25-53 (262)
77 2zu0_C Probable ATP-dependent 95.0 0.016 5.5E-07 53.8 4.2 29 219-247 39-67 (267)
78 1kgd_A CASK, peripheral plasma 95.0 0.015 5.1E-07 50.0 3.7 25 225-249 4-28 (180)
79 3vaa_A Shikimate kinase, SK; s 95.0 0.016 5.4E-07 50.5 3.8 29 221-249 20-48 (199)
80 4g1u_C Hemin import ATP-bindin 95.0 0.014 4.7E-07 54.4 3.5 33 215-247 25-58 (266)
81 1lvg_A Guanylate kinase, GMP k 94.9 0.014 4.6E-07 51.3 3.2 26 224-249 2-27 (198)
82 2jeo_A Uridine-cytidine kinase 94.9 0.015 5.1E-07 52.5 3.6 29 220-248 19-47 (245)
83 1tf7_A KAIC; homohexamer, hexa 94.9 0.017 5.8E-07 58.4 4.3 59 207-266 260-320 (525)
84 2pze_A Cystic fibrosis transme 94.9 0.015 5.2E-07 52.7 3.5 29 219-247 27-55 (229)
85 2v9p_A Replication protein E1; 94.9 0.011 3.8E-07 56.5 2.7 32 218-249 118-149 (305)
86 1mv5_A LMRA, multidrug resista 94.9 0.017 6E-07 52.6 3.9 29 219-247 21-49 (243)
87 3gfo_A Cobalt import ATP-bindi 94.9 0.017 5.7E-07 54.2 3.8 30 218-247 26-55 (275)
88 3te6_A Regulatory protein SIR3 94.9 0.022 7.6E-07 54.7 4.8 28 223-250 42-69 (318)
89 2olj_A Amino acid ABC transpor 94.9 0.016 5.3E-07 54.0 3.6 29 219-247 43-71 (263)
90 3lnc_A Guanylate kinase, GMP k 94.9 0.01 3.5E-07 52.9 2.2 27 221-247 22-48 (231)
91 1ji0_A ABC transporter; ATP bi 94.9 0.016 5.3E-07 52.9 3.5 29 219-247 25-53 (240)
92 1pui_A ENGB, probable GTP-bind 94.9 0.012 4E-07 50.8 2.5 32 215-247 16-47 (210)
93 2ixe_A Antigen peptide transpo 94.9 0.016 5.6E-07 54.0 3.7 29 219-247 38-66 (271)
94 1vpl_A ABC transporter, ATP-bi 94.8 0.016 5.6E-07 53.6 3.6 29 219-247 34-62 (256)
95 1sgw_A Putative ABC transporte 94.8 0.015 5E-07 52.6 3.2 29 219-247 28-56 (214)
96 2ihy_A ABC transporter, ATP-bi 94.8 0.016 5.4E-07 54.4 3.5 30 218-247 39-68 (279)
97 1g6h_A High-affinity branched- 94.8 0.015 5.1E-07 53.6 3.3 29 219-247 26-54 (257)
98 2ghi_A Transport protein; mult 94.8 0.019 6.5E-07 53.1 4.0 29 219-247 39-67 (260)
99 3e70_C DPA, signal recognition 94.8 0.28 9.5E-06 47.0 12.2 40 223-263 126-165 (328)
100 3sfz_A APAF-1, apoptotic pepti 94.8 0.022 7.5E-07 61.6 4.9 40 227-266 148-190 (1249)
101 2qi9_C Vitamin B12 import ATP- 94.7 0.017 5.9E-07 53.2 3.5 30 218-247 18-47 (249)
102 3fvq_A Fe(3+) IONS import ATP- 94.7 0.019 6.5E-07 56.1 4.0 33 215-247 18-51 (359)
103 2yz2_A Putative ABC transporte 94.7 0.019 6.4E-07 53.3 3.7 29 219-247 26-54 (266)
104 1zu4_A FTSY; GTPase, signal re 94.7 0.28 9.7E-06 46.7 12.0 44 221-265 100-143 (320)
105 2nq2_C Hypothetical ABC transp 94.7 0.018 6.1E-07 53.2 3.4 29 219-247 24-52 (253)
106 2eyu_A Twitching motility prot 94.7 0.024 8.1E-07 52.6 4.2 34 216-250 16-49 (261)
107 2chg_A Replication factor C sm 94.6 0.25 8.5E-06 41.7 10.3 24 227-250 39-62 (226)
108 3asz_A Uridine kinase; cytidin 94.6 0.019 6.6E-07 50.0 3.2 27 223-249 3-29 (211)
109 3rlf_A Maltose/maltodextrin im 94.6 0.024 8.1E-07 55.9 4.2 33 215-247 17-50 (381)
110 1z47_A CYSA, putative ABC-tran 94.5 0.024 8.1E-07 55.3 4.0 30 218-247 33-62 (355)
111 2yyz_A Sugar ABC transporter, 94.5 0.025 8.4E-07 55.2 4.2 30 218-247 21-50 (359)
112 1vt4_I APAF-1 related killer D 94.5 0.13 4.4E-06 57.3 10.1 53 226-279 150-204 (1221)
113 2it1_A 362AA long hypothetical 94.5 0.025 8.5E-07 55.3 4.2 30 218-247 21-50 (362)
114 1v43_A Sugar-binding transport 94.5 0.025 8.6E-07 55.5 4.2 30 218-247 29-58 (372)
115 1vma_A Cell division protein F 94.5 0.27 9.1E-06 46.7 11.1 41 223-264 101-141 (306)
116 3pvs_A Replication-associated 94.4 0.08 2.7E-06 52.8 7.8 23 227-249 51-73 (447)
117 3uie_A Adenylyl-sulfate kinase 94.4 0.044 1.5E-06 47.7 5.2 27 224-250 23-49 (200)
118 1g29_1 MALK, maltose transport 94.4 0.026 8.9E-07 55.3 4.0 30 218-247 21-50 (372)
119 2qm8_A GTPase/ATPase; G protei 94.4 0.04 1.4E-06 52.8 5.3 30 221-250 50-79 (337)
120 3b9q_A Chloroplast SRP recepto 94.4 0.047 1.6E-06 51.7 5.6 31 221-251 95-125 (302)
121 3d31_A Sulfate/molybdate ABC t 94.3 0.022 7.5E-07 55.4 3.3 30 218-247 18-47 (348)
122 1y63_A LMAJ004144AAA protein; 94.3 0.033 1.1E-06 47.9 4.0 28 222-249 6-33 (184)
123 2qt1_A Nicotinamide riboside k 94.3 0.027 9.2E-07 49.1 3.5 29 220-248 15-43 (207)
124 3gd7_A Fusion complex of cysti 94.2 0.028 9.7E-07 55.4 4.0 29 219-247 40-68 (390)
125 2i3b_A HCR-ntpase, human cance 94.2 0.024 8.3E-07 50.0 3.2 25 226-250 1-25 (189)
126 2bbs_A Cystic fibrosis transme 94.2 0.025 8.7E-07 53.4 3.4 29 219-247 57-85 (290)
127 3nh6_A ATP-binding cassette SU 94.2 0.023 7.9E-07 54.2 3.1 29 219-247 73-101 (306)
128 3ney_A 55 kDa erythrocyte memb 94.2 0.033 1.1E-06 49.9 4.0 29 221-249 14-42 (197)
129 3bos_A Putative DNA replicatio 94.2 0.061 2.1E-06 46.7 5.6 40 224-264 50-89 (242)
130 3tui_C Methionine import ATP-b 94.1 0.034 1.2E-06 54.5 4.2 33 214-246 41-74 (366)
131 1oxx_K GLCV, glucose, ABC tran 94.0 0.022 7.5E-07 55.4 2.6 30 218-247 23-52 (353)
132 2pjz_A Hypothetical protein ST 94.0 0.032 1.1E-06 51.9 3.6 27 220-247 25-51 (263)
133 1rz3_A Hypothetical protein rb 94.0 0.066 2.3E-06 46.7 5.4 28 222-249 18-45 (201)
134 1knq_A Gluconate kinase; ALFA/ 93.9 0.038 1.3E-06 46.6 3.7 25 224-248 6-30 (175)
135 3uk6_A RUVB-like 2; hexameric 93.9 0.059 2E-06 50.8 5.3 25 226-250 70-94 (368)
136 1sq5_A Pantothenate kinase; P- 93.9 0.058 2E-06 50.8 5.2 27 222-248 76-102 (308)
137 1j8m_F SRP54, signal recogniti 93.9 0.5 1.7E-05 44.5 11.7 40 224-264 96-135 (297)
138 3tau_A Guanylate kinase, GMP k 93.9 0.038 1.3E-06 48.7 3.7 26 224-249 6-31 (208)
139 1s96_A Guanylate kinase, GMP k 93.9 0.035 1.2E-06 50.1 3.5 27 223-249 13-39 (219)
140 1kag_A SKI, shikimate kinase I 93.9 0.037 1.3E-06 46.4 3.4 24 225-248 3-26 (173)
141 3a00_A Guanylate kinase, GMP k 93.8 0.033 1.1E-06 48.0 3.1 24 226-249 1-24 (186)
142 1rj9_A FTSY, signal recognitio 93.8 0.07 2.4E-06 50.6 5.7 28 224-251 100-127 (304)
143 3b85_A Phosphate starvation-in 93.8 0.027 9.2E-07 50.5 2.6 26 223-248 19-44 (208)
144 1t9h_A YLOQ, probable GTPase E 93.7 0.014 4.9E-07 55.8 0.7 31 217-247 164-194 (307)
145 2kjq_A DNAA-related protein; s 93.7 0.038 1.3E-06 46.6 3.2 26 225-250 35-60 (149)
146 1ls1_A Signal recognition part 93.7 0.74 2.5E-05 43.1 12.4 41 225-266 97-137 (295)
147 3cf0_A Transitional endoplasmi 93.7 0.33 1.1E-05 45.1 9.9 26 224-249 47-72 (301)
148 2qor_A Guanylate kinase; phosp 93.7 0.045 1.5E-06 47.8 3.7 27 223-249 9-35 (204)
149 2og2_A Putative signal recogni 93.6 0.077 2.6E-06 51.7 5.7 30 221-250 152-181 (359)
150 3aez_A Pantothenate kinase; tr 93.6 0.04 1.4E-06 52.4 3.5 27 222-248 86-112 (312)
151 3dm5_A SRP54, signal recogniti 93.5 0.34 1.2E-05 48.6 10.3 28 225-252 99-126 (443)
152 1ye8_A Protein THEP1, hypothet 93.5 0.043 1.5E-06 47.8 3.3 22 228-249 2-23 (178)
153 3cm0_A Adenylate kinase; ATP-b 93.5 0.047 1.6E-06 46.3 3.4 25 224-248 2-26 (186)
154 1ixz_A ATP-dependent metallopr 93.4 0.042 1.4E-06 49.4 3.2 25 222-248 47-71 (254)
155 1jbk_A CLPB protein; beta barr 93.4 0.061 2.1E-06 44.5 3.9 27 224-250 41-67 (195)
156 1cke_A CK, MSSA, protein (cyti 93.3 0.057 2E-06 47.3 3.9 25 225-249 4-28 (227)
157 2orw_A Thymidine kinase; TMTK, 93.3 0.089 3.1E-06 45.9 5.1 28 225-252 2-29 (184)
158 2bdt_A BH3686; alpha-beta prot 93.3 0.046 1.6E-06 46.7 3.2 23 226-248 2-24 (189)
159 3kl4_A SRP54, signal recogniti 93.3 0.58 2E-05 46.7 11.6 29 224-252 95-123 (433)
160 2onk_A Molybdate/tungstate ABC 93.3 0.06 2.1E-06 49.2 4.0 29 218-247 17-45 (240)
161 2yv5_A YJEQ protein; hydrolase 93.3 0.03 1E-06 52.8 2.0 31 217-247 156-186 (302)
162 2qp9_X Vacuolar protein sortin 93.3 0.45 1.5E-05 45.5 10.4 22 228-249 86-107 (355)
163 2x8a_A Nuclear valosin-contain 93.3 0.045 1.6E-06 50.7 3.2 25 222-248 42-66 (274)
164 2gj8_A MNME, tRNA modification 93.2 0.049 1.7E-06 45.9 3.2 24 225-248 3-26 (172)
165 1lw7_A Transcriptional regulat 93.2 0.042 1.4E-06 52.8 3.0 28 222-249 164-193 (365)
166 2bbw_A Adenylate kinase 4, AK4 93.2 0.054 1.9E-06 48.7 3.5 24 225-248 26-49 (246)
167 2w58_A DNAI, primosome compone 93.1 0.12 4.1E-06 44.5 5.5 25 227-251 55-79 (202)
168 1yqt_A RNAse L inhibitor; ATP- 92.8 0.072 2.5E-06 54.4 4.2 32 216-247 37-68 (538)
169 2wwf_A Thymidilate kinase, put 92.8 0.14 4.8E-06 44.1 5.5 28 223-250 7-34 (212)
170 1iy2_A ATP-dependent metallopr 92.7 0.059 2E-06 49.3 3.2 26 222-249 71-96 (278)
171 1kht_A Adenylate kinase; phosp 92.7 0.08 2.7E-06 44.6 3.7 26 225-250 2-27 (192)
172 2z0h_A DTMP kinase, thymidylat 92.7 0.24 8.3E-06 42.0 6.8 23 228-250 2-24 (197)
173 4edh_A DTMP kinase, thymidylat 92.7 0.86 2.9E-05 40.7 10.7 55 224-281 4-59 (213)
174 1d2n_A N-ethylmaleimide-sensit 92.6 0.16 5.5E-06 46.0 6.0 25 225-249 63-87 (272)
175 4e22_A Cytidylate kinase; P-lo 92.6 0.071 2.4E-06 48.5 3.5 24 224-247 25-48 (252)
176 3h4m_A Proteasome-activating n 92.6 0.79 2.7E-05 41.4 10.6 25 225-249 50-74 (285)
177 2px0_A Flagellar biosynthesis 92.6 0.22 7.6E-06 46.8 7.0 28 224-251 103-130 (296)
178 4b4t_M 26S protease regulatory 92.6 0.18 6.1E-06 50.4 6.7 21 229-249 218-238 (434)
179 4b4t_K 26S protease regulatory 92.6 0.19 6.6E-06 50.1 6.9 21 229-249 209-229 (428)
180 3iij_A Coilin-interacting nucl 92.6 0.081 2.8E-06 44.8 3.6 26 224-249 9-34 (180)
181 2p65_A Hypothetical protein PF 92.6 0.072 2.4E-06 44.2 3.2 27 224-250 41-67 (187)
182 2ewv_A Twitching motility prot 92.6 0.12 4.2E-06 50.1 5.3 28 223-250 133-160 (372)
183 2npi_A Protein CLP1; CLP1-PCF1 92.5 0.062 2.1E-06 54.0 3.3 30 219-248 131-160 (460)
184 3j16_B RLI1P; ribosome recycli 92.5 0.084 2.9E-06 54.9 4.2 32 216-247 93-124 (608)
185 1nn5_A Similar to deoxythymidy 92.4 0.16 5.6E-06 43.7 5.4 28 223-250 6-33 (215)
186 1u0l_A Probable GTPase ENGC; p 92.4 0.041 1.4E-06 51.7 1.6 31 217-247 160-190 (301)
187 3n70_A Transport activator; si 92.4 0.2 7E-06 41.3 5.7 24 225-248 23-46 (145)
188 3kb2_A SPBC2 prophage-derived 92.3 0.092 3.1E-06 43.5 3.6 22 228-249 3-24 (173)
189 4b4t_J 26S protease regulatory 92.3 0.28 9.7E-06 48.7 7.6 58 229-302 185-251 (405)
190 2yvu_A Probable adenylyl-sulfa 92.3 0.19 6.5E-06 42.8 5.6 28 223-250 10-37 (186)
191 3eie_A Vacuolar protein sortin 92.2 0.72 2.5E-05 43.1 10.0 23 227-249 52-74 (322)
192 2ffh_A Protein (FFH); SRP54, s 92.2 1.3 4.5E-05 44.0 12.4 28 225-252 97-124 (425)
193 2f9l_A RAB11B, member RAS onco 92.2 0.084 2.9E-06 45.3 3.3 22 228-249 7-28 (199)
194 3jvv_A Twitching mobility prot 92.2 0.17 5.9E-06 49.0 5.8 28 223-250 120-147 (356)
195 2qby_B CDC6 homolog 3, cell di 92.1 0.14 4.9E-06 48.1 5.0 27 224-250 43-69 (384)
196 1r8s_A ADP-ribosylation factor 92.0 0.11 3.7E-06 42.3 3.6 22 228-249 2-23 (164)
197 2pez_A Bifunctional 3'-phospho 92.0 0.11 3.6E-06 44.1 3.6 25 225-249 4-28 (179)
198 3b5x_A Lipid A export ATP-bind 92.0 0.094 3.2E-06 53.7 3.8 30 219-248 362-391 (582)
199 1oix_A RAS-related protein RAB 92.0 0.09 3.1E-06 45.0 3.2 22 228-249 31-52 (191)
200 2plr_A DTMP kinase, probable t 92.0 0.11 3.8E-06 44.5 3.8 26 225-250 3-28 (213)
201 3fb4_A Adenylate kinase; psych 92.0 0.1 3.5E-06 45.4 3.6 22 228-249 2-23 (216)
202 2wji_A Ferrous iron transport 91.9 0.098 3.3E-06 43.5 3.3 22 227-248 4-25 (165)
203 3trf_A Shikimate kinase, SK; a 91.9 0.12 4E-06 43.8 3.8 24 226-249 5-28 (185)
204 1yqt_A RNAse L inhibitor; ATP- 91.9 0.095 3.3E-06 53.5 3.8 26 222-247 308-333 (538)
205 3dl0_A Adenylate kinase; phosp 91.9 0.11 3.7E-06 45.4 3.6 21 228-248 2-22 (216)
206 3b60_A Lipid A export ATP-bind 91.9 0.096 3.3E-06 53.6 3.8 30 218-247 361-390 (582)
207 4b4t_L 26S protease subunit RP 91.8 0.31 1.1E-05 48.7 7.4 21 229-249 218-238 (437)
208 2dyk_A GTP-binding protein; GT 91.8 0.11 3.8E-06 42.0 3.4 22 228-249 3-24 (161)
209 3bk7_A ABC transporter ATP-bin 91.8 0.11 3.7E-06 54.0 4.1 32 216-247 107-138 (607)
210 1kao_A RAP2A; GTP-binding prot 91.7 0.094 3.2E-06 42.4 2.9 22 228-249 5-26 (167)
211 2zej_A Dardarin, leucine-rich 91.7 0.085 2.9E-06 44.6 2.7 21 228-248 4-24 (184)
212 1qhx_A CPT, protein (chloramph 91.6 0.13 4.6E-06 43.1 3.8 24 226-249 3-26 (178)
213 2nzj_A GTP-binding protein REM 91.6 0.11 3.7E-06 42.7 3.2 21 228-248 6-26 (175)
214 2pbr_A DTMP kinase, thymidylat 91.6 0.38 1.3E-05 40.4 6.8 23 228-250 2-24 (195)
215 2rcn_A Probable GTPase ENGC; Y 91.6 0.059 2E-06 52.6 1.7 31 217-247 206-236 (358)
216 3v9p_A DTMP kinase, thymidylat 91.6 0.99 3.4E-05 40.9 9.9 58 224-281 23-82 (227)
217 1zuh_A Shikimate kinase; alpha 91.6 0.13 4.4E-06 43.0 3.6 23 227-249 8-30 (168)
218 1z2a_A RAS-related protein RAB 91.5 0.12 4.2E-06 41.9 3.4 22 228-249 7-28 (168)
219 2gza_A Type IV secretion syste 91.5 0.069 2.4E-06 51.6 2.2 28 221-248 170-197 (361)
220 4eaq_A DTMP kinase, thymidylat 91.5 0.22 7.7E-06 44.8 5.4 29 222-250 22-50 (229)
221 4b4t_I 26S protease regulatory 91.5 0.6 2.1E-05 46.8 8.9 21 229-249 219-239 (437)
222 2p67_A LAO/AO transport system 91.5 0.2 6.9E-06 47.7 5.3 31 221-251 51-81 (341)
223 2v54_A DTMP kinase, thymidylat 91.4 0.14 4.7E-06 43.9 3.8 24 225-248 3-26 (204)
224 3upu_A ATP-dependent DNA helic 91.4 0.14 4.8E-06 50.7 4.4 68 188-265 16-85 (459)
225 1tev_A UMP-CMP kinase; ploop, 91.4 0.14 4.7E-06 43.2 3.7 25 225-249 2-26 (196)
226 2yl4_A ATP-binding cassette SU 91.4 0.098 3.4E-06 53.7 3.3 30 218-247 362-391 (595)
227 3pfi_A Holliday junction ATP-d 91.4 0.5 1.7E-05 43.9 7.9 23 227-249 56-78 (338)
228 2www_A Methylmalonic aciduria 91.4 0.24 8E-06 47.6 5.8 25 226-250 74-98 (349)
229 3lw7_A Adenylate kinase relate 91.4 0.11 3.6E-06 42.7 2.9 19 228-246 3-21 (179)
230 2ce2_X GTPase HRAS; signaling 91.4 0.1 3.5E-06 42.0 2.7 22 228-249 5-26 (166)
231 1u8z_A RAS-related protein RAL 91.4 0.11 3.8E-06 42.0 2.9 22 228-249 6-27 (168)
232 4a82_A Cystic fibrosis transme 91.4 0.11 3.7E-06 53.3 3.5 29 219-247 360-388 (578)
233 1z08_A RAS-related protein RAB 91.3 0.1 3.6E-06 42.6 2.8 22 228-249 8-29 (170)
234 1ek0_A Protein (GTP-binding pr 91.3 0.11 3.7E-06 42.2 2.9 22 228-249 5-26 (170)
235 2c95_A Adenylate kinase 1; tra 91.3 0.14 4.6E-06 43.5 3.6 27 223-249 6-32 (196)
236 1hqc_A RUVB; extended AAA-ATPa 91.2 0.41 1.4E-05 43.9 7.0 68 227-308 39-106 (324)
237 3vfd_A Spastin; ATPase, microt 91.2 1.1 3.9E-05 42.9 10.4 24 226-249 148-171 (389)
238 2wjg_A FEOB, ferrous iron tran 91.2 0.13 4.3E-06 43.1 3.3 22 227-248 8-29 (188)
239 1xwi_A SKD1 protein; VPS4B, AA 91.2 0.66 2.3E-05 43.7 8.6 23 227-249 46-68 (322)
240 2if2_A Dephospho-COA kinase; a 91.2 0.12 4.1E-06 44.5 3.2 21 228-248 3-23 (204)
241 2jaq_A Deoxyguanosine kinase; 91.1 0.15 5E-06 43.4 3.6 22 228-249 2-23 (205)
242 3ozx_A RNAse L inhibitor; ATP 91.1 0.11 3.7E-06 53.2 3.2 27 221-247 289-315 (538)
243 1c1y_A RAS-related protein RAP 91.1 0.14 4.9E-06 41.5 3.4 22 228-249 5-26 (167)
244 1zd8_A GTP:AMP phosphotransfer 91.1 0.14 4.7E-06 45.3 3.5 26 223-248 4-29 (227)
245 3bk7_A ABC transporter ATP-bin 91.1 0.13 4.4E-06 53.5 3.8 26 222-247 378-403 (607)
246 2rhm_A Putative kinase; P-loop 91.1 0.15 5.3E-06 43.1 3.7 26 224-249 3-28 (193)
247 3qf4_B Uncharacterized ABC tra 91.1 0.11 3.9E-06 53.4 3.3 29 219-247 374-402 (598)
248 3q85_A GTP-binding protein REM 91.1 0.14 4.7E-06 41.9 3.3 20 228-247 4-23 (169)
249 3kta_A Chromosome segregation 91.0 0.15 5.3E-06 43.0 3.6 29 218-247 19-47 (182)
250 2b8t_A Thymidine kinase; deoxy 91.0 0.28 9.5E-06 44.6 5.5 29 224-252 10-38 (223)
251 1r2q_A RAS-related protein RAB 91.0 0.15 5.2E-06 41.3 3.4 22 228-249 8-29 (170)
252 2xxa_A Signal recognition part 91.0 1.2 4.2E-05 44.2 10.6 29 225-253 99-127 (433)
253 3qf4_A ABC transporter, ATP-bi 90.9 0.13 4.4E-06 52.9 3.6 29 219-247 362-390 (587)
254 1iqp_A RFCS; clamp loader, ext 90.9 1.2 4E-05 40.6 9.7 26 225-250 45-70 (327)
255 1p9r_A General secretion pathw 90.9 0.21 7.1E-06 49.6 4.9 28 223-250 164-191 (418)
256 1odf_A YGR205W, hypothetical 3 90.9 0.15 5.1E-06 47.9 3.7 28 223-250 28-55 (290)
257 1wms_A RAB-9, RAB9, RAS-relate 90.8 0.13 4.4E-06 42.4 2.9 22 228-249 9-30 (177)
258 3ihw_A Centg3; RAS, centaurin, 90.8 0.13 4.3E-06 43.9 2.9 22 228-249 22-43 (184)
259 3nwj_A ATSK2; P loop, shikimat 90.8 0.086 2.9E-06 48.6 1.9 28 221-248 40-70 (250)
260 1g16_A RAS-related protein SEC 90.8 0.15 5.1E-06 41.5 3.2 22 228-249 5-26 (170)
261 3ux8_A Excinuclease ABC, A sub 90.8 0.12 4.1E-06 53.8 3.2 25 219-243 37-61 (670)
262 1aky_A Adenylate kinase; ATP:A 90.8 0.17 6E-06 44.3 3.8 25 225-249 3-27 (220)
263 1ky3_A GTP-binding protein YPT 90.8 0.16 5.5E-06 41.8 3.4 22 228-249 10-31 (182)
264 2erx_A GTP-binding protein DI- 90.7 0.15 5.2E-06 41.4 3.2 23 227-249 4-26 (172)
265 2qgz_A Helicase loader, putati 90.7 0.29 9.8E-06 46.1 5.5 27 225-251 151-177 (308)
266 1m2o_B GTP-binding protein SAR 90.7 0.12 4.2E-06 44.1 2.7 25 224-248 21-45 (190)
267 2iyv_A Shikimate kinase, SK; t 90.7 0.16 5.5E-06 43.0 3.5 23 227-249 3-25 (184)
268 1z0j_A RAB-22, RAS-related pro 90.7 0.17 5.7E-06 41.2 3.4 22 228-249 8-29 (170)
269 2bwj_A Adenylate kinase 5; pho 90.7 0.16 5.3E-06 43.3 3.3 26 224-249 10-35 (199)
270 4b3f_X DNA-binding protein smu 90.7 0.41 1.4E-05 49.5 7.1 50 229-281 208-257 (646)
271 2vp4_A Deoxynucleoside kinase; 90.6 0.096 3.3E-06 46.8 2.0 26 222-247 16-41 (230)
272 1njg_A DNA polymerase III subu 90.6 0.17 5.9E-06 43.1 3.6 23 228-250 47-69 (250)
273 1upt_A ARL1, ADP-ribosylation 90.6 0.14 4.9E-06 41.8 2.9 25 225-249 6-30 (171)
274 3bc1_A RAS-related protein RAB 90.6 0.17 5.8E-06 42.0 3.4 22 228-249 13-34 (195)
275 3q72_A GTP-binding protein RAD 90.5 0.14 4.8E-06 41.7 2.9 20 228-247 4-23 (166)
276 1mh1_A RAC1; GTP-binding, GTPa 90.5 0.14 4.9E-06 42.4 2.9 22 228-249 7-28 (186)
277 1ly1_A Polynucleotide kinase; 90.5 0.16 5.5E-06 42.3 3.2 21 228-248 4-24 (181)
278 1jjv_A Dephospho-COA kinase; P 90.5 0.16 5.4E-06 44.0 3.3 20 228-247 4-23 (206)
279 1in4_A RUVB, holliday junction 90.5 0.8 2.7E-05 43.1 8.4 23 227-249 52-74 (334)
280 2iwr_A Centaurin gamma 1; ANK 90.5 0.11 3.7E-06 43.2 2.1 22 228-249 9-30 (178)
281 3lv8_A DTMP kinase, thymidylat 90.5 1.8 6E-05 39.5 10.4 52 225-279 26-79 (236)
282 2iw3_A Elongation factor 3A; a 90.5 0.16 5.6E-06 55.7 4.0 29 219-247 454-482 (986)
283 2cdn_A Adenylate kinase; phosp 90.5 0.2 6.8E-06 43.2 3.9 26 224-249 18-43 (201)
284 1ukz_A Uridylate kinase; trans 90.4 0.2 6.9E-06 43.1 3.9 24 225-248 14-37 (203)
285 2fn4_A P23, RAS-related protei 90.4 0.16 5.6E-06 41.7 3.2 23 227-249 10-32 (181)
286 2hxs_A RAB-26, RAS-related pro 90.4 0.14 4.8E-06 42.2 2.7 22 228-249 8-29 (178)
287 2vli_A Antibiotic resistance p 90.4 0.14 4.8E-06 43.1 2.7 24 225-248 4-27 (183)
288 2r8r_A Sensor protein; KDPD, P 90.4 0.33 1.1E-05 44.6 5.4 37 228-265 8-44 (228)
289 3t61_A Gluconokinase; PSI-biol 90.4 0.19 6.4E-06 43.4 3.6 23 227-249 19-41 (202)
290 2ged_A SR-beta, signal recogni 90.3 0.18 6.1E-06 42.5 3.4 23 227-249 49-71 (193)
291 4dsu_A GTPase KRAS, isoform 2B 90.3 0.15 5.2E-06 42.4 2.9 22 228-249 6-27 (189)
292 1svm_A Large T antigen; AAA+ f 90.3 0.14 4.6E-06 50.3 2.9 28 221-248 164-191 (377)
293 3c5c_A RAS-like protein 12; GD 90.3 0.15 5.1E-06 43.3 2.9 22 228-249 23-44 (187)
294 3dz8_A RAS-related protein RAB 90.3 0.18 6.1E-06 42.7 3.4 23 228-250 25-47 (191)
295 3p32_A Probable GTPase RV1496/ 90.2 1 3.4E-05 43.0 9.0 29 224-252 77-105 (355)
296 1z0f_A RAB14, member RAS oncog 90.2 0.19 6.6E-06 41.2 3.4 22 228-249 17-38 (179)
297 1via_A Shikimate kinase; struc 90.2 0.18 6.2E-06 42.5 3.3 22 228-249 6-27 (175)
298 1nks_A Adenylate kinase; therm 90.2 0.18 6.3E-06 42.3 3.3 23 228-250 3-25 (194)
299 2cxx_A Probable GTP-binding pr 90.2 0.16 5.4E-06 42.4 2.9 22 228-249 3-24 (190)
300 2pt7_A CAG-ALFA; ATPase, prote 90.2 0.073 2.5E-06 50.9 0.9 28 221-248 166-193 (330)
301 3con_A GTPase NRAS; structural 90.2 0.16 5.4E-06 42.7 2.9 22 228-249 23-44 (190)
302 3bwd_D RAC-like GTP-binding pr 90.2 0.16 5.5E-06 42.0 2.9 23 227-249 9-31 (182)
303 3clv_A RAB5 protein, putative; 90.1 0.19 6.6E-06 41.8 3.4 23 227-249 8-30 (208)
304 3kkq_A RAS-related protein M-R 90.1 0.16 5.5E-06 42.3 2.9 22 228-249 20-41 (183)
305 2a9k_A RAS-related protein RAL 90.1 0.16 5.6E-06 42.0 2.9 22 228-249 20-41 (187)
306 3be4_A Adenylate kinase; malar 90.1 0.2 7E-06 44.0 3.7 25 225-249 4-28 (217)
307 2j37_W Signal recognition part 90.0 2.1 7E-05 43.5 11.5 29 224-252 99-127 (504)
308 1m7b_A RND3/RHOE small GTP-bin 90.0 0.15 5.2E-06 42.9 2.7 22 228-249 9-30 (184)
309 2y8e_A RAB-protein 6, GH09086P 90.0 0.18 6.1E-06 41.4 3.0 22 228-249 16-37 (179)
310 3b9p_A CG5977-PA, isoform A; A 90.0 0.21 7.2E-06 45.6 3.8 24 226-249 54-77 (297)
311 4b4t_H 26S protease regulatory 90.0 0.55 1.9E-05 47.5 7.1 22 228-249 245-266 (467)
312 2bme_A RAB4A, RAS-related prot 89.9 0.16 5.4E-06 42.3 2.7 22 228-249 12-33 (186)
313 2oil_A CATX-8, RAS-related pro 89.9 0.21 7.1E-06 42.2 3.4 22 228-249 27-48 (193)
314 3tlx_A Adenylate kinase 2; str 89.9 0.22 7.5E-06 45.0 3.8 25 225-249 28-52 (243)
315 2efe_B Small GTP-binding prote 89.9 0.21 7.1E-06 41.3 3.4 22 228-249 14-35 (181)
316 3ux8_A Excinuclease ABC, A sub 89.9 0.16 5.4E-06 52.9 3.2 28 219-246 341-368 (670)
317 2cjw_A GTP-binding protein GEM 89.9 0.22 7.5E-06 42.7 3.6 21 228-248 8-28 (192)
318 3t15_A Ribulose bisphosphate c 89.8 0.17 5.9E-06 47.0 3.1 21 229-249 39-59 (293)
319 2g6b_A RAS-related protein RAB 89.8 0.18 6.1E-06 41.7 2.9 22 228-249 12-33 (180)
320 4dkx_A RAS-related protein RAB 89.8 0.17 5.8E-06 45.2 2.9 22 228-249 15-36 (216)
321 2lkc_A Translation initiation 89.8 0.2 6.9E-06 41.3 3.2 24 225-248 7-30 (178)
322 1q3t_A Cytidylate kinase; nucl 89.7 0.22 7.6E-06 44.3 3.7 25 224-248 14-38 (236)
323 3pqc_A Probable GTP-binding pr 89.7 0.18 6.3E-06 42.1 2.9 22 228-249 25-46 (195)
324 2bov_A RAla, RAS-related prote 89.7 0.18 6.2E-06 42.7 2.9 22 228-249 16-37 (206)
325 3t5g_A GTP-binding protein RHE 89.7 0.17 5.8E-06 42.0 2.7 22 228-249 8-29 (181)
326 2qz4_A Paraplegin; AAA+, SPG7, 89.7 0.21 7.1E-06 44.4 3.4 23 227-249 40-62 (262)
327 2qag_B Septin-6, protein NEDD5 89.7 0.16 5.5E-06 50.8 2.9 27 221-247 35-63 (427)
328 3t1o_A Gliding protein MGLA; G 89.6 0.22 7.7E-06 41.5 3.4 21 228-249 16-36 (198)
329 2p5t_B PEZT; postsegregational 89.6 0.18 6E-06 45.8 2.9 28 222-249 28-55 (253)
330 3syl_A Protein CBBX; photosynt 89.6 0.24 8.4E-06 45.3 3.9 26 225-250 66-91 (309)
331 1m7g_A Adenylylsulfate kinase; 89.6 0.26 8.9E-06 43.0 3.9 28 223-250 22-49 (211)
332 1lv7_A FTSH; alpha/beta domain 89.6 0.21 7.2E-06 44.8 3.4 21 229-249 48-68 (257)
333 3tw8_B RAS-related protein RAB 89.5 0.2 7E-06 41.1 3.1 21 228-248 11-31 (181)
334 1ex7_A Guanylate kinase; subst 89.5 0.22 7.5E-06 44.0 3.4 21 229-249 4-24 (186)
335 2gf9_A RAS-related protein RAB 89.4 0.2 6.7E-06 42.3 2.9 22 228-249 24-45 (189)
336 3tkl_A RAS-related protein RAB 89.4 0.24 8.2E-06 41.6 3.4 22 228-249 18-39 (196)
337 2hf9_A Probable hydrogenase ni 89.3 0.23 8E-06 43.1 3.4 24 227-250 39-62 (226)
338 2fh5_B SR-beta, signal recogni 89.3 0.2 6.8E-06 43.1 2.9 23 227-249 8-30 (214)
339 1zak_A Adenylate kinase; ATP:A 89.2 0.24 8.1E-06 43.5 3.4 25 225-249 4-28 (222)
340 1vg8_A RAS-related protein RAB 89.2 0.25 8.5E-06 42.0 3.4 22 228-249 10-31 (207)
341 1svi_A GTP-binding protein YSX 89.2 0.21 7.2E-06 42.0 2.9 24 226-249 23-46 (195)
342 3reg_A RHO-like small GTPase; 89.2 0.21 7.1E-06 42.3 2.9 22 228-249 25-46 (194)
343 2a5j_A RAS-related protein RAB 89.1 0.21 7.2E-06 42.2 2.9 22 228-249 23-44 (191)
344 1z06_A RAS-related protein RAB 89.1 0.25 8.7E-06 41.5 3.4 22 228-249 22-43 (189)
345 4f4c_A Multidrug resistance pr 89.1 0.16 5.6E-06 57.1 2.8 30 219-248 1098-1127(1321)
346 1xjc_A MOBB protein homolog; s 89.1 0.49 1.7E-05 41.2 5.3 24 228-251 6-29 (169)
347 3sr0_A Adenylate kinase; phosp 89.1 0.26 9E-06 43.9 3.6 22 228-249 2-23 (206)
348 1ak2_A Adenylate kinase isoenz 89.0 0.29 1E-05 43.5 3.9 25 225-249 15-39 (233)
349 1zd9_A ADP-ribosylation factor 89.0 0.26 8.9E-06 41.6 3.4 22 228-249 24-45 (188)
350 2r62_A Cell division protease 89.0 0.19 6.6E-06 45.2 2.7 21 229-249 47-67 (268)
351 2pt5_A Shikimate kinase, SK; a 89.0 0.28 9.7E-06 40.6 3.6 22 228-249 2-23 (168)
352 1nrj_B SR-beta, signal recogni 89.0 0.26 8.8E-06 42.5 3.4 23 227-249 13-35 (218)
353 2atv_A RERG, RAS-like estrogen 89.0 0.26 8.9E-06 41.8 3.4 39 210-249 13-51 (196)
354 2p5s_A RAS and EF-hand domain 88.9 0.22 7.4E-06 42.6 2.8 22 228-249 30-51 (199)
355 1x3s_A RAS-related protein RAB 88.9 0.27 9.4E-06 41.1 3.4 22 228-249 17-38 (195)
356 1uf9_A TT1252 protein; P-loop, 88.9 0.27 9.4E-06 41.8 3.5 24 225-248 7-30 (203)
357 1e6c_A Shikimate kinase; phosp 88.8 0.27 9.2E-06 40.9 3.3 22 228-249 4-25 (173)
358 2fg5_A RAB-22B, RAS-related pr 88.8 0.25 8.6E-06 41.9 3.2 22 228-249 25-46 (192)
359 1e4v_A Adenylate kinase; trans 88.8 0.27 9.1E-06 43.0 3.4 22 228-249 2-23 (214)
360 4fcw_A Chaperone protein CLPB; 88.7 0.35 1.2E-05 44.1 4.3 38 227-265 48-85 (311)
361 1zbd_A Rabphilin-3A; G protein 88.7 0.26 9E-06 41.8 3.3 22 228-249 10-31 (203)
362 2ze6_A Isopentenyl transferase 88.6 0.26 9E-06 44.8 3.4 22 228-249 3-24 (253)
363 1fzq_A ADP-ribosylation factor 88.6 0.24 8.1E-06 41.8 2.9 23 226-248 16-38 (181)
364 1ofh_A ATP-dependent HSL prote 88.5 0.29 1E-05 44.4 3.6 25 225-249 49-73 (310)
365 2atx_A Small GTP binding prote 88.5 0.23 7.8E-06 41.9 2.7 22 228-249 20-41 (194)
366 4bas_A ADP-ribosylation factor 88.5 0.26 9E-06 41.4 3.1 22 227-248 18-39 (199)
367 2f1r_A Molybdopterin-guanine d 88.5 0.16 5.5E-06 44.1 1.7 24 227-250 3-26 (171)
368 3u61_B DNA polymerase accessor 88.4 3.1 0.00011 38.2 10.7 67 228-305 49-118 (324)
369 3oes_A GTPase rhebl1; small GT 88.4 0.28 9.5E-06 41.9 3.2 25 225-249 23-47 (201)
370 4gzl_A RAS-related C3 botulinu 88.4 0.23 7.8E-06 42.8 2.7 25 225-249 29-53 (204)
371 2q3h_A RAS homolog gene family 88.4 0.23 7.9E-06 42.2 2.7 23 227-249 21-43 (201)
372 2ew1_A RAS-related protein RAB 88.4 0.23 7.8E-06 43.2 2.7 22 228-249 28-49 (201)
373 2h17_A ADP-ribosylation factor 88.4 0.23 8E-06 41.6 2.6 23 227-249 22-44 (181)
374 2gf0_A GTP-binding protein DI- 88.3 0.28 9.7E-06 41.2 3.2 23 227-249 9-31 (199)
375 2fu5_C RAS-related protein RAB 88.3 0.16 5.6E-06 42.2 1.7 22 228-249 10-31 (183)
376 4tmk_A Protein (thymidylate ki 88.3 2.5 8.6E-05 37.7 9.6 52 225-279 2-55 (213)
377 2iw3_A Elongation factor 3A; a 88.3 0.18 6.3E-06 55.3 2.4 30 218-247 691-720 (986)
378 2o52_A RAS-related protein RAB 88.3 0.22 7.4E-06 42.8 2.4 22 228-249 27-48 (200)
379 3ozx_A RNAse L inhibitor; ATP 88.3 0.26 9E-06 50.3 3.4 28 220-247 19-46 (538)
380 1qf9_A UMP/CMP kinase, protein 88.3 0.34 1.1E-05 40.7 3.6 23 227-249 7-29 (194)
381 1ksh_A ARF-like protein 2; sma 88.3 0.25 8.5E-06 41.3 2.7 25 224-248 16-40 (186)
382 1zj6_A ADP-ribosylation factor 88.2 0.28 9.5E-06 41.2 3.0 24 225-248 15-38 (187)
383 3cbq_A GTP-binding protein REM 88.2 0.23 7.9E-06 42.7 2.6 20 228-247 25-44 (195)
384 2oap_1 GSPE-2, type II secreti 88.2 0.18 6.1E-06 51.3 2.1 28 221-248 255-282 (511)
385 1gvn_B Zeta; postsegregational 88.2 0.32 1.1E-05 45.3 3.7 28 222-249 29-56 (287)
386 1gwn_A RHO-related GTP-binding 88.2 0.24 8.3E-06 43.1 2.7 22 228-249 30-51 (205)
387 3sop_A Neuronal-specific septi 88.1 0.25 8.7E-06 45.7 3.0 21 228-248 4-24 (270)
388 2grj_A Dephospho-COA kinase; T 88.1 0.44 1.5E-05 41.9 4.4 22 228-249 14-35 (192)
389 3r20_A Cytidylate kinase; stru 88.1 0.32 1.1E-05 44.5 3.6 23 227-249 10-32 (233)
390 2qmh_A HPR kinase/phosphorylas 88.1 0.29 9.8E-06 44.4 3.2 26 224-249 32-57 (205)
391 1np6_A Molybdopterin-guanine d 88.1 0.59 2E-05 40.6 5.1 25 227-251 7-31 (174)
392 4ag6_A VIRB4 ATPase, type IV s 88.0 0.53 1.8E-05 45.2 5.3 28 225-252 34-61 (392)
393 2qen_A Walker-type ATPase; unk 88.0 0.34 1.2E-05 44.4 3.7 24 226-249 31-54 (350)
394 3q3j_B RHO-related GTP-binding 88.0 0.27 9.3E-06 42.9 2.9 22 228-249 29-50 (214)
395 2bcg_Y Protein YP2, GTP-bindin 88.0 0.31 1.1E-05 41.6 3.2 22 228-249 10-31 (206)
396 1moz_A ARL1, ADP-ribosylation 87.9 0.2 6.9E-06 41.6 1.9 24 224-247 16-39 (183)
397 1f6b_A SAR1; gtpases, N-termin 87.9 0.24 8.1E-06 42.6 2.5 24 225-248 24-47 (198)
398 1ega_A Protein (GTP-binding pr 87.9 0.26 8.8E-06 46.2 2.9 26 224-249 6-31 (301)
399 2f7s_A C25KG, RAS-related prot 87.9 0.31 1.1E-05 41.9 3.2 21 228-248 27-47 (217)
400 3pxg_A Negative regulator of g 87.8 0.85 2.9E-05 45.3 6.8 26 225-250 200-225 (468)
401 3cph_A RAS-related protein SEC 87.7 0.35 1.2E-05 41.2 3.4 23 227-249 21-43 (213)
402 2g3y_A GTP-binding protein GEM 87.7 0.32 1.1E-05 43.1 3.2 20 228-247 39-58 (211)
403 2j0v_A RAC-like GTP-binding pr 87.7 0.27 9.2E-06 42.2 2.7 23 227-249 10-32 (212)
404 3lxx_A GTPase IMAP family memb 87.7 0.32 1.1E-05 43.1 3.2 21 228-248 31-51 (239)
405 1ni3_A YCHF GTPase, YCHF GTP-b 87.6 0.32 1.1E-05 47.9 3.5 29 220-248 14-42 (392)
406 2fv8_A H6, RHO-related GTP-bin 87.5 0.33 1.1E-05 41.7 3.2 22 228-249 27-48 (207)
407 3m6a_A ATP-dependent protease 87.5 0.34 1.1E-05 49.4 3.7 25 225-249 107-131 (543)
408 3ld9_A DTMP kinase, thymidylat 87.4 2.3 8E-05 38.4 8.9 53 224-278 19-73 (223)
409 3gmt_A Adenylate kinase; ssgci 87.4 0.37 1.3E-05 44.1 3.6 23 227-249 9-31 (230)
410 3euj_A Chromosome partition pr 87.4 0.4 1.4E-05 48.6 4.1 30 218-248 22-51 (483)
411 3cr8_A Sulfate adenylyltranfer 87.4 0.17 5.8E-06 52.0 1.4 29 222-250 365-393 (552)
412 2hup_A RAS-related protein RAB 87.4 0.28 9.7E-06 42.1 2.7 22 228-249 31-52 (201)
413 2il1_A RAB12; G-protein, GDP, 87.4 0.34 1.2E-05 41.1 3.1 22 228-249 28-49 (192)
414 1uj2_A Uridine-cytidine kinase 87.3 0.36 1.2E-05 43.5 3.4 22 228-249 24-45 (252)
415 3g5u_A MCG1178, multidrug resi 87.2 0.33 1.1E-05 54.5 3.7 30 218-247 1051-1080(1284)
416 2gco_A H9, RHO-related GTP-bin 87.2 0.36 1.2E-05 41.3 3.2 22 228-249 27-48 (201)
417 1c9k_A COBU, adenosylcobinamid 87.2 0.41 1.4E-05 42.2 3.6 33 229-266 2-34 (180)
418 1tq4_A IIGP1, interferon-induc 87.1 0.23 7.9E-06 49.3 2.1 21 228-248 71-91 (413)
419 1xx6_A Thymidine kinase; NESG, 87.1 0.82 2.8E-05 40.3 5.5 30 223-252 5-34 (191)
420 2b6h_A ADP-ribosylation factor 87.0 0.34 1.2E-05 41.3 2.9 24 225-248 28-51 (192)
421 2j1l_A RHO-related GTP-binding 86.9 0.35 1.2E-05 41.9 3.0 22 228-249 36-57 (214)
422 2h57_A ADP-ribosylation factor 86.9 0.28 9.7E-06 41.3 2.3 23 227-249 22-44 (190)
423 1vht_A Dephospho-COA kinase; s 86.8 0.46 1.6E-05 41.4 3.7 23 225-247 3-25 (218)
424 3tqc_A Pantothenate kinase; bi 86.8 0.36 1.2E-05 46.3 3.2 21 228-248 94-114 (321)
425 3ake_A Cytidylate kinase; CMP 86.8 0.45 1.6E-05 40.6 3.6 21 228-248 4-24 (208)
426 2fna_A Conserved hypothetical 86.8 0.39 1.3E-05 44.1 3.3 24 227-250 31-54 (357)
427 3e1s_A Exodeoxyribonuclease V, 86.8 0.6 2.1E-05 48.0 5.1 27 225-251 203-229 (574)
428 2r44_A Uncharacterized protein 86.7 0.29 1E-05 45.5 2.5 26 224-249 44-69 (331)
429 2bjv_A PSP operon transcriptio 86.7 0.47 1.6E-05 42.6 3.8 41 226-267 29-69 (265)
430 2xb4_A Adenylate kinase; ATP-b 86.5 0.46 1.6E-05 42.0 3.6 22 228-249 2-23 (223)
431 2qnr_A Septin-2, protein NEDD5 86.5 0.32 1.1E-05 45.6 2.6 20 228-247 20-39 (301)
432 3g5u_A MCG1178, multidrug resi 86.4 0.36 1.2E-05 54.3 3.4 29 219-247 409-437 (1284)
433 1e9r_A Conjugal transfer prote 86.4 0.59 2E-05 45.4 4.6 28 225-252 52-79 (437)
434 3a4m_A L-seryl-tRNA(SEC) kinas 86.4 0.46 1.6E-05 43.2 3.6 25 225-249 3-27 (260)
435 1sxj_E Activator 1 40 kDa subu 86.3 0.37 1.3E-05 44.9 3.0 27 223-249 33-59 (354)
436 2wsm_A Hydrogenase expression/ 86.3 0.45 1.6E-05 41.1 3.3 25 226-250 30-54 (221)
437 2qu8_A Putative nucleolar GTP- 86.2 0.37 1.2E-05 42.3 2.7 23 227-249 30-52 (228)
438 3cpj_B GTP-binding protein YPT 86.1 0.48 1.6E-05 41.3 3.4 22 228-249 15-36 (223)
439 1tue_A Replication protein E1; 86.1 0.41 1.4E-05 43.6 3.0 27 224-250 56-82 (212)
440 2dhr_A FTSH; AAA+ protein, hex 86.1 0.39 1.3E-05 48.8 3.2 24 223-248 63-86 (499)
441 2yc2_C IFT27, small RAB-relate 85.9 0.2 6.7E-06 42.4 0.8 23 227-249 21-43 (208)
442 3k53_A Ferrous iron transport 85.9 0.41 1.4E-05 43.6 3.0 21 228-248 5-25 (271)
443 1gtv_A TMK, thymidylate kinase 85.8 0.24 8.1E-06 42.7 1.3 23 228-250 2-24 (214)
444 3umf_A Adenylate kinase; rossm 85.8 0.48 1.7E-05 42.8 3.4 26 224-249 27-52 (217)
445 3llu_A RAS-related GTP-binding 85.8 0.45 1.5E-05 40.5 3.0 20 228-247 22-41 (196)
446 3gj0_A GTP-binding nuclear pro 85.7 0.27 9.4E-06 42.6 1.7 23 228-250 17-39 (221)
447 3j16_B RLI1P; ribosome recycli 85.7 0.48 1.6E-05 49.2 3.7 29 219-247 366-399 (608)
448 1sxj_D Activator 1 41 kDa subu 85.5 0.55 1.9E-05 43.5 3.7 24 227-250 59-82 (353)
449 3hws_A ATP-dependent CLP prote 85.3 0.53 1.8E-05 44.6 3.6 24 226-249 51-74 (363)
450 2xtp_A GTPase IMAP family memb 85.3 0.46 1.6E-05 42.6 3.0 22 227-248 23-44 (260)
451 3d8b_A Fidgetin-like protein 1 85.3 0.51 1.7E-05 45.0 3.4 24 226-249 117-140 (357)
452 1sxj_C Activator 1 40 kDa subu 85.1 0.5 1.7E-05 44.3 3.2 22 229-250 49-70 (340)
453 4f4c_A Multidrug resistance pr 85.1 0.5 1.7E-05 53.3 3.7 29 219-247 437-465 (1321)
454 2x77_A ADP-ribosylation factor 85.0 0.36 1.2E-05 40.5 1.9 23 225-247 21-43 (189)
455 3k1j_A LON protease, ATP-depen 84.8 0.47 1.6E-05 48.7 3.1 27 222-248 56-82 (604)
456 2gk6_A Regulator of nonsense t 84.7 0.84 2.9E-05 47.1 5.0 53 226-281 195-248 (624)
457 3pxi_A Negative regulator of g 84.4 1.3 4.5E-05 46.4 6.4 27 224-250 199-225 (758)
458 1udx_A The GTP-binding protein 84.4 0.49 1.7E-05 46.9 2.9 32 217-248 148-179 (416)
459 3tqf_A HPR(Ser) kinase; transf 84.4 0.62 2.1E-05 41.4 3.3 26 224-249 14-39 (181)
460 1qvr_A CLPB protein; coiled co 84.1 1.8 6.3E-05 46.1 7.5 27 225-251 190-216 (854)
461 3co5_A Putative two-component 84.1 0.29 9.9E-06 40.3 1.0 22 225-246 26-47 (143)
462 1um8_A ATP-dependent CLP prote 84.1 0.63 2.2E-05 44.3 3.5 24 226-249 72-95 (376)
463 2ce7_A Cell division protein F 84.0 0.55 1.9E-05 47.3 3.2 25 223-249 48-72 (476)
464 3th5_A RAS-related C3 botulinu 84.4 0.21 7.1E-06 42.7 0.0 25 225-249 29-53 (204)
465 3lfu_A DNA helicase II; SF1 he 83.9 0.96 3.3E-05 45.9 5.0 27 226-252 22-48 (647)
466 4djt_A GTP-binding nuclear pro 83.9 0.52 1.8E-05 40.6 2.5 21 228-248 13-33 (218)
467 1g8p_A Magnesium-chelatase 38 83.7 0.42 1.5E-05 44.3 2.1 24 226-249 45-68 (350)
468 2zan_A Vacuolar protein sortin 83.7 0.63 2.2E-05 45.9 3.4 23 227-249 168-190 (444)
469 2ga8_A Hypothetical 39.9 kDa p 83.6 0.76 2.6E-05 44.9 3.8 27 223-249 19-47 (359)
470 1a7j_A Phosphoribulokinase; tr 83.6 0.77 2.6E-05 42.8 3.8 25 225-249 4-28 (290)
471 2ohf_A Protein OLA1, GTP-bindi 83.5 0.64 2.2E-05 45.9 3.3 28 222-249 18-45 (396)
472 2c9o_A RUVB-like 1; hexameric 83.4 0.74 2.5E-05 45.4 3.8 26 225-250 62-87 (456)
473 3b1v_A Ferrous iron uptake tra 83.3 0.68 2.3E-05 42.8 3.2 22 227-248 4-25 (272)
474 1ypw_A Transitional endoplasmi 83.2 0.65 2.2E-05 49.6 3.5 26 223-248 235-260 (806)
475 3cf2_A TER ATPase, transitiona 83.2 0.87 3E-05 49.0 4.4 20 229-248 241-260 (806)
476 4aby_A DNA repair protein RECN 83.0 0.33 1.1E-05 46.7 1.0 33 213-246 47-80 (415)
477 4dhe_A Probable GTP-binding pr 83.0 0.34 1.1E-05 41.8 1.0 24 226-249 29-52 (223)
478 2ocp_A DGK, deoxyguanosine kin 82.9 0.82 2.8E-05 40.6 3.6 25 225-249 1-25 (241)
479 2f6r_A COA synthase, bifunctio 82.8 0.67 2.3E-05 42.9 3.0 20 228-247 77-96 (281)
480 3lxw_A GTPase IMAP family memb 82.8 0.75 2.6E-05 41.5 3.3 22 227-248 22-43 (247)
481 2chq_A Replication factor C sm 82.7 0.85 2.9E-05 41.3 3.6 24 227-250 39-62 (319)
482 3a1s_A Iron(II) transport prot 82.5 0.76 2.6E-05 41.9 3.2 21 228-248 7-27 (258)
483 1a5t_A Delta prime, HOLB; zinc 82.5 3.1 0.00011 39.1 7.5 22 229-250 27-48 (334)
484 3f9v_A Minichromosome maintena 82.5 0.94 3.2E-05 46.7 4.2 20 228-247 329-348 (595)
485 3t5d_A Septin-7; GTP-binding p 82.5 0.68 2.3E-05 42.2 2.9 26 222-247 2-29 (274)
486 2ius_A DNA translocase FTSK; n 82.4 1.8 6.2E-05 44.1 6.2 49 220-269 161-211 (512)
487 2h92_A Cytidylate kinase; ross 82.3 0.9 3.1E-05 39.4 3.5 23 226-248 3-25 (219)
488 3d3q_A TRNA delta(2)-isopenten 82.3 0.8 2.7E-05 44.4 3.4 22 228-249 9-30 (340)
489 1wf3_A GTP-binding protein; GT 82.3 0.69 2.4E-05 43.4 2.9 25 225-249 6-30 (301)
490 3llm_A ATP-dependent RNA helic 82.1 1.6 5.4E-05 38.7 5.1 27 223-249 73-99 (235)
491 2v3c_C SRP54, signal recogniti 82.1 1.1 3.7E-05 44.5 4.4 27 226-252 99-125 (432)
492 1sxj_B Activator 1 37 kDa subu 82.1 0.95 3.2E-05 41.1 3.7 23 228-250 44-66 (323)
493 1mky_A Probable GTP-binding pr 81.6 0.82 2.8E-05 44.9 3.3 22 227-248 181-202 (439)
494 2qag_C Septin-7; cell cycle, c 81.5 0.7 2.4E-05 45.8 2.7 20 229-248 34-53 (418)
495 3thx_A DNA mismatch repair pro 81.2 1.2 4E-05 48.7 4.6 31 217-247 653-683 (934)
496 2wkq_A NPH1-1, RAS-related C3 81.0 0.77 2.6E-05 42.0 2.7 25 225-249 154-178 (332)
497 3nbx_X ATPase RAVA; AAA+ ATPas 80.8 0.65 2.2E-05 47.1 2.3 26 223-248 38-63 (500)
498 1jr3_A DNA polymerase III subu 80.8 1 3.5E-05 41.9 3.5 23 228-250 40-62 (373)
499 2j9r_A Thymidine kinase; TK1, 80.7 2.2 7.5E-05 38.7 5.5 47 223-269 25-72 (214)
500 3r7w_A Gtpase1, GTP-binding pr 80.7 0.95 3.2E-05 42.2 3.2 24 226-249 3-26 (307)
No 1
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=100.00 E-value=2.2e-70 Score=554.97 Aligned_cols=264 Identities=78% Similarity=1.183 Sum_probs=242.8
Q ss_pred ccCCceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCcee
Q 018957 82 TGKGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITV 161 (348)
Q Consensus 82 ~~~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~V 161 (348)
+...++|+|++|.|++|+++|+..+|.+++.+++...+.++++||++|++++.+++++|++++||++|++|.+||++++|
T Consensus 9 ~~~~~~G~v~~v~G~vv~v~~~~~~~~i~~~~~i~~~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~v 88 (482)
T 2ck3_D 9 KAGATTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRI 88 (482)
T ss_dssp ----CEEEEEEEETTEEEEEESSCCCCTTCEEEESSCSSCCEEEEEEEEETTEEEEEESSCCTTCBTTCEEEECSSSCEE
T ss_pred ccCCcceEEEEEEccEEEEEecCccCcccceEEEeeCCCcEEEEEeEEecCCeEEEEeccCccCCCCCCEEEEcCCccee
Confidence 44556899999999999999975588898777764323468999999999999999999999999999999999999999
Q ss_pred cCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHH
Q 018957 162 PVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTV 241 (348)
Q Consensus 162 pVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~ 241 (348)
|||++|||||+|++|+|||+++++...++||+++++|++.+|.++++||+||||+||+|+||+||||++|||++|+|||+
T Consensus 89 pvG~~lLGRV~d~lG~PiDg~~~~~~~~~~pi~~~~P~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~Ifgg~G~GKT~ 168 (482)
T 2ck3_D 89 PVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTV 168 (482)
T ss_dssp ECSGGGBTCEECTTSCBCSSSCSCCCCCEEESCCCCCCGGGCCCCCCEECCSCHHHHHHSCEETTCEEEEEECTTSSHHH
T ss_pred eccccccCCEEcccCcCcCCcCCCCccccccccccCCchHHhcccCcCCccceEEEecccccccCCeeeeecCCCCChHH
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHH
Q 018957 242 LIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEH 321 (348)
Q Consensus 242 L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEy 321 (348)
|++++|+|++++|+++|||++||||+||++||+++|.+.++++.. ..++||++|++|+|+||.+|++++|+|+|+|||
T Consensus 169 L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~--~~~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEy 246 (482)
T 2ck3_D 169 LIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLK--DATSKVALVYGQMNEPPGARARVALTGLTVAEY 246 (482)
T ss_dssp HHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSS--SSCCCEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhccccccc--cCCceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999888889999999999999999999999999876421 134699999999999999999999999999999
Q ss_pred hhhcCCCcEEEEEechhHHHhhhccc
Q 018957 322 FRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 322 frd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|||++|||||||+|||||||+|+||+
T Consensus 247 frd~~G~dVLll~DsitR~A~A~rEi 272 (482)
T 2ck3_D 247 FRDQEGQDVLLFIDNIFRFTQAGSEV 272 (482)
T ss_dssp HHHTTCSCEEEEEECTHHHHHHHHHH
T ss_pred HHHhcCCcEEEEeccHHHHHHHHHHh
Confidence 99977999999999999999999986
No 2
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=100.00 E-value=1.3e-70 Score=558.37 Aligned_cols=260 Identities=62% Similarity=0.975 Sum_probs=241.4
Q ss_pred ceeeEEEEECCEEEEEeCC-CChhhhhceEEee-c--Cc--eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCc
Q 018957 86 AIGQVCQVIGAVVDVRFDE-GLPPILTALEVVD-H--SV--RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPI 159 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~-glp~i~~~lev~~-~--~~--~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l 159 (348)
++|+|++|+|++|+++|.+ .+|.+++.+++.. . .. ++++||++|++++.+++++|++++||++|++|.+||+++
T Consensus 19 ~~G~v~~V~G~vv~v~~~~~~~~~i~~~~~i~~~~~~g~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~ 98 (498)
T 1fx0_B 19 NLGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPL 98 (498)
T ss_dssp CCEEEEEEETTEEEEECCSSCCCCTTCEEEECCCSSSSCCCCCEEEEEECCSSSCEEEEESSCCTTCCTTCEEEECSSSC
T ss_pred CCceEEEEEccEEEEEeCCCCccccccEEEEEeCCCCCcccceEEEEEEEecCCeEEEEEecCccCCCCCCEEEecCCcc
Confidence 4699999999999999875 4788888787743 1 12 579999999999999999999999999999999999999
Q ss_pred eecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcH
Q 018957 160 TVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGK 239 (348)
Q Consensus 160 ~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGK 239 (348)
+||||++|||||+|++|+|||+++++...++|||+++||+|++|.++++||+||||+||+|+||+||||+||||++|+||
T Consensus 99 ~vpvG~~lLGRV~d~lG~PiD~~~~i~~~~~~pi~~~~p~~~~r~~~~e~l~TGirvID~l~pigkGqr~gIfgg~GvGK 178 (498)
T 1fx0_B 99 SVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKIGLFGGAGVGK 178 (498)
T ss_dssp EEEESSTTTTCEECTTSCBCSSSSCCCCSEEEESCCCCCCGGGCCCCCCCCCCSCTTHHHHSCCCTTCCEEEEECSSSSH
T ss_pred eEecCccceeeEEcccccCCCCcCCcCCCceeccccCCCchhhhcccccccccceeEeeeecccccCCeEEeecCCCCCc
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCC-CeeEEEEecCCCCHHHHHHHHHHHHHH
Q 018957 240 TVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQAD-SKCALVYGQMNEPPGARARVGLTGLTV 318 (348)
Q Consensus 240 T~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~-~rtvvV~~tsdep~~~r~~a~~~a~ti 318 (348)
|+|++++|+|++++|+++|||++||||+||++||+++|.+.++++. +..+ +||+||++|+|+||.+|++++|+|+|+
T Consensus 179 T~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~--~~l~~~rtvvV~~t~d~p~~~R~~~~~~alti 256 (498)
T 1fx0_B 179 TVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINE--QNIAESKVALVYGQMNEPPGARMRVGLTALTM 256 (498)
T ss_dssp HHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCS--STTCCCCEEEEEECTTSCHHHHTTHHHHHHHT
T ss_pred hHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhccccccc--ccccccceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 9999999999988888999999999999999999999999987631 1111 399999999999999999999999999
Q ss_pred HHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 319 AEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 319 AEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
||||||++|||||||+|||||||+|+|||
T Consensus 257 AEyfrd~~G~dVLl~~DsitR~A~A~rEv 285 (498)
T 1fx0_B 257 AEYFRDVNEQDVLLFIDNIFRFVQAGSEV 285 (498)
T ss_dssp HHHHTTTSCCEEEEEEECSHHHHHHHHHH
T ss_pred HHHHHHhcCCcEEEEeccHHHHHHHHHHH
Confidence 99999977999999999999999999986
No 3
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=100.00 E-value=5.5e-67 Score=531.74 Aligned_cols=249 Identities=26% Similarity=0.426 Sum_probs=226.3
Q ss_pred CCceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecC
Q 018957 84 KGAIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (348)
Q Consensus 84 ~~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpV 163 (348)
...+|+|++|.|+++.++ |++++. ..|++.+..+.. +.+.+++++.+++++|+++.||++|++|++||++++|||
T Consensus 25 ~~~~G~V~~v~g~i~~v~---Gl~~~~-~gElv~~~~~~~-g~v~~l~~d~v~~~~~~~~~gi~~G~~V~~tg~~~~Vpv 99 (513)
T 3oaa_A 25 AHNEGTIVSVSDGVIRIH---GLADCM-QGEMISLPGNRY-AIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPV 99 (513)
T ss_dssp CTTEEEEEEEETTEEEEE---ECTTCB-TTCEEEETTTEE-EEEEEECSSCEEEEESSCCSSCCTTCEEECCSCSSEEEC
T ss_pred ceeEEEEEEEECcEEEEE---CCccCC-cCCEEEECCCCE-EEEEEeeCCEEEEEEeCCccCCCCCCEEEEcCCCCeEee
Confidence 445899999999999997 887554 234433333444 455567888999999999999999999999999999999
Q ss_pred CccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHH
Q 018957 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (348)
Q Consensus 164 G~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~ 243 (348)
|++|||||+|++|+|||+++++....++||+++||++++|.++++||+||||+||+|+|||||||++|||++|+|||+|+
T Consensus 100 G~~lLGRV~d~lG~PiDg~g~i~~~~~~pi~~~ap~~~~R~~v~epl~TGikaID~l~PigrGQR~~Ifg~~g~GKT~l~ 179 (513)
T 3oaa_A 100 GRGLLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALA 179 (513)
T ss_dssp SGGGTTCEEETTSCBTTCSCSCCCSCEEESSCCCCCSSSCCCCCCBCCCSCHHHHHHSCCBTTCBCEEEESSSSSHHHHH
T ss_pred CHHHhccchhhcCcCccCCCCCCccceeecccCCCCccccCCcCcccccceeeeccccccccCCEEEeecCCCCCcchHH
Confidence 99999999999999999999998889999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhh
Q 018957 244 MELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (348)
Q Consensus 244 ~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfr 323 (348)
+++|.|++ .++.+|||++||||+||+++|+++|.+.|+ ++||+||++|+|+||.+|+++||+|+|+|||||
T Consensus 180 l~~I~n~~-~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~--------m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfr 250 (513)
T 3oaa_A 180 IDAIINQR-DSGIKCIYVAIGQKASTISNVVRKLEEHGA--------LANTIVVVATASESAALQYLAPYAGCAMGEYFR 250 (513)
T ss_dssp HHHHHTTS-SSSCEEEEEEESCCHHHHHHHHHHHHHHSC--------STTEEEEEECTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhc-cCCceEEEEEecCChHHHHHHHHHHhhcCc--------ccceEEEEECCCCChHHHHHHHHHHHHHHHHHH
Confidence 88888873 334579999999999999999999999985 469999999999999999999999999999999
Q ss_pred hcCCCcEEEEEechhHHHhhhccc
Q 018957 324 DAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 324 d~~G~dVLli~DslTR~A~A~~e~ 347 (348)
| +|+|||++||||||||+|++|+
T Consensus 251 d-~G~dVLli~Dsltr~A~A~REi 273 (513)
T 3oaa_A 251 D-RGEDALIIYDDLSKQAVAYRQI 273 (513)
T ss_dssp H-TTCEEEEEEETHHHHHHHHHHH
T ss_pred h-cCCCEEEEecChHHHHHHHHHH
Confidence 9 8999999999999999999986
No 4
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=100.00 E-value=1.6e-66 Score=529.68 Aligned_cols=248 Identities=23% Similarity=0.395 Sum_probs=226.7
Q ss_pred ceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCc
Q 018957 86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR 165 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~ 165 (348)
.+|+|++|.|++++++ |+|++. ..|++....+. .+++.+++++.+++++|+++.||++|+.|++||++++||||+
T Consensus 27 ~~G~V~~v~g~iv~v~---gl~~~~-~ge~~~i~~g~-~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~ 101 (510)
T 2ck3_A 27 ETGRVLSIGDGIARVH---GLRNVQ-AEEMVEFSSGL-KGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGE 101 (510)
T ss_dssp SEEEEEEEETTEEEEE---ECTTCB-TTCEEEETTSC-EEEEEEECSSCEEEEESSCGGGCCTTCEEEECCCCCEEEESG
T ss_pred EEeEEEEEECcEEEEe---eCCCCC-CCCEEEECCCC-eEEEEeccCCeEEEEEECCcccccCCCEEEEeCCcceeecCc
Confidence 5899999999999997 887665 12232222233 477778899999999999999999999999999999999999
Q ss_pred cccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHHH
Q 018957 166 VTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245 (348)
Q Consensus 166 ~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~ 245 (348)
+|||||+|++|+|||+++++...++|||+++||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|+++
T Consensus 102 ~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~I~g~~g~GKT~Lal~ 181 (510)
T 2ck3_A 102 ELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAID 181 (510)
T ss_dssp GGTTCEECTTSCBCSSSCCCCCSEEEESSCCCCCSTTBCCCCSBCCCSCHHHHHHSCCBTTCBCEEEESTTSSHHHHHHH
T ss_pred cceeeEEccCCcCcCCCCCCCccceeecccCCCCcccccccCccccccceeeccccccccCCEEEEecCCCCCchHHHHH
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHhh-------cCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHH
Q 018957 246 LINNVAKA-------HGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318 (348)
Q Consensus 246 ii~n~a~~-------~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~ti 318 (348)
+|.|+++. ++.+|||++||||+||+++|+++|++.+++ +||+||++|+|+||.+|+++||+|+|+
T Consensus 182 ~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m--------~~tvvV~atad~p~~~r~~a~~~a~ti 253 (510)
T 2ck3_A 182 TIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAM--------KYTIVVSATASDAAPLQYLAPYSGCSM 253 (510)
T ss_dssp HHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCG--------GGEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCc--------ccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 88888763 334799999999999999999999998854 699999999999999999999999999
Q ss_pred HHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 319 AEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 319 AEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|||||| +|+|||++||||||||+|+||+
T Consensus 254 AEyfrd-~G~dVLli~Dsltr~A~A~REi 281 (510)
T 2ck3_A 254 GEYFRD-NGKHALIIYDDLSKQAVAYRQM 281 (510)
T ss_dssp HHHHHT-TTCEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHH-cCCcEEEEEcCHHHHHHHHHHH
Confidence 999999 7999999999999999999986
No 5
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=100.00 E-value=1.8e-66 Score=528.47 Aligned_cols=246 Identities=25% Similarity=0.427 Sum_probs=226.3
Q ss_pred ceeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCc
Q 018957 86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGR 165 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~ 165 (348)
.+|+|++|.|++++++ |+|++. ..|++....+. .+++.+++++.+++++|+++.||++|+.|++||++++||||+
T Consensus 27 ~~G~V~~v~g~iv~v~---gl~~~~-~ge~~~i~~g~-~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~ 101 (502)
T 2qe7_A 27 EVGTVIQVGDGIARVH---GLEKVM-AGELLEFENGV-MGMAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGE 101 (502)
T ss_dssp CEEEEEEEETTEEEEE---CCTTCB-TTEEEEETTSC-EEEEEEEETTEEEEEECSCCSSCCTTCEEEEEEEESEEECSG
T ss_pred EEEEEEEecCcEEEEE---ECCCCC-CCCEEEECCCC-EEEEEEecCCeEEEEEecCccCCcCCCEEEEeCCcceEEccc
Confidence 5899999999999997 887665 22333332233 477778899999999999999999999999999999999999
Q ss_pred cccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHHH
Q 018957 166 VTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIME 245 (348)
Q Consensus 166 ~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~ 245 (348)
+|||||+|++|+|||+++++...++|||+++||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|+++
T Consensus 102 ~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT~Lal~ 181 (502)
T 2qe7_A 102 ALLGRVVNPLGQPLDGRGPIETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAID 181 (502)
T ss_dssp GGTTCEECTTCCBSSCSCCCCCCCEEESSCCCCCTTSBCCCCSBCCCSCHHHHHSSCCBTTCBCEEEECSSSCHHHHHHH
T ss_pred ccceEEEccCCCCCCCCCCCCCCceeeccCCCCCcccccCCCCccccceeecccccccccCCEEEEECCCCCCchHHHHH
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHhhcCC-EEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhh
Q 018957 246 LINNVAKAHGG-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324 (348)
Q Consensus 246 ii~n~a~~~~~-~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd 324 (348)
+|.|++. .| +|||++||||+||+++|+++|.+.++ ++||+||++|+|+||.+|+++||+|+|+||||||
T Consensus 182 ~I~~~~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~--------m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd 251 (502)
T 2qe7_A 182 TIINQKG--QDVICIYVAIGQKQSTVAGVVETLRQHDA--------LDYTIVVTASASEPAPLLYLAPYAGCAMGEYFMY 251 (502)
T ss_dssp HHHGGGS--CSEEEEEEEESCCHHHHHHHHHHHHHTTC--------STTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhc--CCcEEEEEECCCcchHHHHHHHHHhhCCC--------cceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888753 45 78999999999999999999999885 4699999999999999999999999999999999
Q ss_pred cCCCcEEEEEechhHHHhhhccc
Q 018957 325 AEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 325 ~~G~dVLli~DslTR~A~A~~e~ 347 (348)
+|||||++||||||||+|+||+
T Consensus 252 -~G~dVLl~~Dsltr~A~A~REi 273 (502)
T 2qe7_A 252 -KGKHALVVYDDLSKQAAAYREL 273 (502)
T ss_dssp -TTCEEEEEEECHHHHHHHHHHH
T ss_pred -cCCcEEEEEecHHHHHHHHHHH
Confidence 7999999999999999999986
No 6
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=100.00 E-value=6.8e-66 Score=524.81 Aligned_cols=246 Identities=25% Similarity=0.433 Sum_probs=225.7
Q ss_pred ceeeEEEEECCEEEEEeCCCChhhhhceEEeec-CceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957 86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVDH-SVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~-~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG 164 (348)
.+|+|++|.|++++++ |+|.+. ..|++.. ..+. .+++.+++++.+++++|+++.||++|+.|++||++++||||
T Consensus 39 ~~G~V~~V~g~iv~v~---gl~~~~-~gEl~~i~~~g~-~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG 113 (515)
T 2r9v_A 39 DTGKVIQVGDGIARAY---GLNKVM-VSELVEFVETGV-KGVAFNLEEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVG 113 (515)
T ss_dssp TEEEEEEEETTEEEEE---ECTTCC-TTEEEEETTTCC-EEEEEECCTTCEEEEEESCCTTCCTTCEEEEEEEECEEEES
T ss_pred eeeEEEEEECcEEEEe---cCCCCC-CCCEEEEecCCe-EEEEEEecCCeEEEEEecCcccccCCCEEEEeCCcceeecC
Confidence 5899999999999997 887665 2233333 2233 46677789999999999999999999999999999999999
Q ss_pred ccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHH
Q 018957 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (348)
Q Consensus 165 ~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~ 244 (348)
++|||||+|++|+|||+++++...++|||+++||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|++
T Consensus 114 ~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~P~~~~R~~v~epl~TGiraID~l~PigrGQR~~I~g~~g~GKT~Lal 193 (515)
T 2r9v_A 114 EELLGRVVNPLGEPLDGKGPINAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTAIAI 193 (515)
T ss_dssp GGGTTCEECTTSCBCSSSCCCCCSEEEESCCCCCCGGGBCCCCSEECCSCHHHHHHSCEETTCBEEEEEETTSSHHHHHH
T ss_pred ccceeeEEcCCCCCcCCCCCCCccceeecccCCCCcccccCCCcchhcCccccccccccccCCEEEEEcCCCCCccHHHH
Confidence 99999999999999999999988889999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhhcCC-EEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhh
Q 018957 245 ELINNVAKAHGG-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFR 323 (348)
Q Consensus 245 ~ii~n~a~~~~~-~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfr 323 (348)
++|.|++. .| +|||++||||+||+++|+++|.+.+++ +||+||++|+|+||.+|+++||+|+|+|||||
T Consensus 194 ~~I~~~~~--~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m--------~rtvvV~atad~p~~~r~~a~~~a~tiAEyfr 263 (515)
T 2r9v_A 194 DTIINQKG--QGVYCIYVAIGQKKSAIARIIDKLRQYGAM--------EYTTVVVASASDPASLQYIAPYAGCAMGEYFA 263 (515)
T ss_dssp HHHHTTTT--TTEEEEEEEESCCHHHHHHHHHHHHHTTGG--------GGEEEEEECTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhc--CCcEEEEEEcCCCcHHHHHHHHHHHhCCCc--------ceeEEEEECCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88888753 45 689999999999999999999998854 69999999999999999999999999999999
Q ss_pred hcCCCcEEEEEechhHHHhhhccc
Q 018957 324 DAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 324 d~~G~dVLli~DslTR~A~A~~e~ 347 (348)
| +|||||++||||||||+|+||+
T Consensus 264 d-~G~dVLli~DslTr~A~A~REi 286 (515)
T 2r9v_A 264 Y-SGRDALVVYDDLSKHAVAYRQL 286 (515)
T ss_dssp T-TTCEEEEEEETHHHHHHHHHHH
T ss_pred H-cCCcEEEEeccHHHHHHHHHHH
Confidence 9 7999999999999999999986
No 7
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=100.00 E-value=1.9e-65 Score=516.58 Aligned_cols=250 Identities=22% Similarity=0.346 Sum_probs=224.4
Q ss_pred CceeeEEEEECCEEEEEeCCCChhhh-hceEEee--cCceeEEEEeeeccCceEEEEeecCCCCCC-CCCEEEecCCCce
Q 018957 85 GAIGQVCQVIGAVVDVRFDEGLPPIL-TALEVVD--HSVRLVLEVAQHMGEGVVRTIAMDGTEGLV-RGQRVLNTGSPIT 160 (348)
Q Consensus 85 ~~~G~V~~V~G~vV~v~f~~glp~i~-~~lev~~--~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~-~G~~V~~tg~~l~ 160 (348)
..+|+|++|.|++++++ |++.+. +++..+. ++.....||+.+ +++.+.+++|+++.||+ .|++|.+||++++
T Consensus 10 ~~~g~v~~v~g~~v~v~---gl~~~~~ge~v~i~~~~g~~~~geVv~~-~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~ 85 (465)
T 3vr4_D 10 KEYRTIKEVVGPLMAVE---KVSGVKYEELIEVRMQNGEIRRGQVLEV-QEDKAMVQIFEGTSGINLKNSSVRFLGHPLQ 85 (465)
T ss_dssp -CBCCEEEEETTEEEEE---SCCSCCTTCEEEEECTTSCEEEEEEEEE-ESSEEEEEETTCCTTCCTTTCEEEECSSCCE
T ss_pred ceEEEEEEEECCEEEEe---cCCCCCcCCEEEEEcCCCCEEEEEEEEE-eCCeEEEEEecCccccccCCCEEEECCCcce
Confidence 35899999999999997 765433 3433332 223567888866 66678899999999999 9999999999999
Q ss_pred ecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHH
Q 018957 161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (348)
Q Consensus 161 VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT 240 (348)
||||++|||||+|++|+|||+++++..+.++||++.||+|++|.++++||+||||+||+|+||+||||++|||++|+|||
T Consensus 86 vpvg~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt 165 (465)
T 3vr4_D 86 LGVSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHK 165 (465)
T ss_dssp EEECGGGTTEEEETTSCBCSCCCCCCCSEEEESSCCCBCTTTEECCCCBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHH
T ss_pred eecchhhccceeccCCcccCCCCCCcccceeeccCcccCchhccCcccccccCceEEecccccccCCEEEEeCCCCcChH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCC----EEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHH
Q 018957 241 VLIMELINNVAKAHGG----FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316 (348)
Q Consensus 241 ~L~~~ii~n~a~~~~~----~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~ 316 (348)
+|+++|++ ++++|++ +|||++||||+||+++|+++|.+.+++ +||++|++|+|+||.+|+++||+|+
T Consensus 166 ~L~~~Ia~-~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~--------~rtvvV~atsd~p~~~r~~a~~~a~ 236 (465)
T 3vr4_D 166 ELAAQIAR-QATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAI--------DRSVMFMNLANDPAIERIATPRMAL 236 (465)
T ss_dssp HHHHHHHH-HCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGG--------GGEEEEEEETTSCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCc--------cceEEEEECCCCCHHHHHHHHHHHH
Confidence 99987665 5555445 899999999999999999999999854 6999999999999999999999999
Q ss_pred HHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 317 TVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 317 tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|+||||||++|+||||+|||+||||+|+||+
T Consensus 237 tiAEyfrd~~G~~VLl~~DslTr~A~A~REi 267 (465)
T 3vr4_D 237 TAAEYLAYEKGMHVLVIMTDMTNYAEALREI 267 (465)
T ss_dssp HHHHHHHHTTCCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEcChHHHHHHHHHH
Confidence 9999999956999999999999999999986
No 8
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=100.00 E-value=3e-66 Score=527.42 Aligned_cols=246 Identities=22% Similarity=0.350 Sum_probs=225.3
Q ss_pred ceeeEEEEECCEEEEEeCCCChhhh-hceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957 86 AIGQVCQVIGAVVDVRFDEGLPPIL-TALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~glp~i~-~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG 164 (348)
.+|+|++|.|++++++ |+|.+. +++. ....+. .+++.+++++.+++++|+++.||++|+.|++||++++||||
T Consensus 28 ~~G~V~~v~g~iv~v~---gl~~~~~ge~~--~i~~g~-~g~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG 101 (507)
T 1fx0_A 28 NTGTVLQVGDGIARIH---GLDEVMAGELV--EFEEGT-IGIALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVS 101 (507)
T ss_dssp TEEEECCCCSSEEEEE---ECTTCCTTCCE--EETTCC-EEEEEEECSSEEEEEECSCGGGCCTTCEEECCCCCCEEEES
T ss_pred EEEEEEEEeCCEEEEE---ECCCccCCCEE--EECCCc-eEEEEeccCCeEEEEEecCccCCcCCCEEEEeCCcceeecC
Confidence 5899999999999997 886655 2222 222233 46777889999999999999999999999999999999999
Q ss_pred ccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHHH
Q 018957 165 RVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIM 244 (348)
Q Consensus 165 ~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~ 244 (348)
++|||||+|++|+|||+++++...++|||+++||+|++|.++++||+||||+||+|+|||||||++|||++|+|||+|++
T Consensus 102 ~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT~Lal 181 (507)
T 1fx0_A 102 EAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAMIPVGRGQRELIIGDRQTGKTAVAT 181 (507)
T ss_dssp SSCSSCCCCSSSCCSSSSCCCCCSEEEESSCCCCCSSSBCCCCSBCCCSCTTTTTTSCCBTTCBCBEEESSSSSHHHHHH
T ss_pred ccceeEEEccCCcCCCCCCCCCCCceeeccCCCCCcccccccCCcccccceecccccccccCCEEEEecCCCCCccHHHH
Confidence 99999999999999999999988889999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhh
Q 018957 245 ELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRD 324 (348)
Q Consensus 245 ~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd 324 (348)
++|.|++. ++.+|||++||||+||+++|+++|.+.++ ++||+||++|+|+||.+|+++||+|+|+||||||
T Consensus 182 ~~I~~~~~-~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~--------m~rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd 252 (507)
T 1fx0_A 182 DTILNQQG-QNVICVYVAIGQKASSVAQVVTNFQERGA--------MEYTIVVAETADSPATLQYLAPYTGAALAEYFMY 252 (507)
T ss_dssp HHHHTCCT-TTCEEEEEEESCCHHHHHHHHHHTGGGTG--------GGSEEEEEECTTSCGGGTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhc-CCcEEEEEEcCCCchHHHHHHHHHHhcCc--------cccceEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888753 33479999999999999999999998875 4699999999999999999999999999999999
Q ss_pred cCCCcEEEEEechhHHHhhhccc
Q 018957 325 AEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 325 ~~G~dVLli~DslTR~A~A~~e~ 347 (348)
+|||||++||||||||+|+||+
T Consensus 253 -~G~dVLli~Dsltr~A~A~REi 274 (507)
T 1fx0_A 253 -RERHTLIIYDDLSKQAQAYRQM 274 (507)
T ss_dssp -TTCEEEEEEECHHHHHHHHHHH
T ss_pred -cCCcEEEEEecHHHHHHHHHHH
Confidence 7999999999999999999986
No 9
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=100.00 E-value=1.2e-65 Score=519.73 Aligned_cols=253 Identities=20% Similarity=0.291 Sum_probs=202.5
Q ss_pred CceeeEEEEECCEEEEEeCCCChhhhhceEEee-cCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecC
Q 018957 85 GAIGQVCQVIGAVVDVRFDEGLPPILTALEVVD-HSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPV 163 (348)
Q Consensus 85 ~~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~-~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpV 163 (348)
..+|+|++|.|+++++++.. .+.+.+.+++.. .+.....||+.+ .++.+.+++|+++.||++|++|.+||++++|||
T Consensus 12 ~~~g~V~~V~g~vv~v~g~~-~~~~ge~v~i~~~~g~~~~geV~~~-~~~~v~~~~~~~t~gl~~G~~V~~tg~~l~vpv 89 (469)
T 2c61_A 12 KEYKTITQIAGPLIFVEKTE-PVGYNEIVNIKMGDGTVRRGQVLDS-SADIVVVQVFEGTGGLDKDCGVIFTGETLKLPA 89 (469)
T ss_dssp ----------CCEEEEECCS-CCCTTCEEEEECTTSCEEEEEEEEE-CSSEEEEEEC-------------CEEEBCEEEE
T ss_pred ccccEEEEEECcEEEEeeCC-CCCcCCEEEEEeCCCCEEEEEEEEE-eCCEEEEEEeCCCcCCCCCCEEEEcCCCcEEEc
Confidence 34799999999999998432 234443344421 222355777765 677889999999999999999999999999999
Q ss_pred CccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHHH
Q 018957 164 GRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLI 243 (348)
Q Consensus 164 G~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~ 243 (348)
|++|||||+|++|+|||+++++..+.++|+++.||+|++|.++++||+||||+||+|+||+||||++|||++|+|||+|+
T Consensus 90 g~~lLGRV~d~lG~PiDg~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGir~ID~l~pigrGQr~~Ifgg~G~GKt~Ll 169 (469)
T 2c61_A 90 SVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIA 169 (469)
T ss_dssp CGGGTTCEEETTSCBSSSCCCCCCSEEEESSSCSSCCBCSCCCCSBCBCSCHHHHTTSCCBTTCBCCEEECTTSCHHHHH
T ss_pred cccceeeEEcccCCCCCCCCCCCccccccccCccCCcccccccccccceeeEeeeeeeccccCCEEEEECCCCCCHHHHH
Confidence 99999999999999999999988888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc---CCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHH
Q 018957 244 MELINNVAKAH---GGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAE 320 (348)
Q Consensus 244 ~~ii~n~a~~~---~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAE 320 (348)
.+|+++...++ +++|||++||||+||++||+++|.+.+++ +||+||++|+|+||.+|++++|+|+|+||
T Consensus 170 ~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m--------~rtvvV~~tsd~p~~~r~~~~~~a~tiAE 241 (469)
T 2c61_A 170 LQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGAL--------ERAVVFLNLADDPAVERIVTPRMALTAAE 241 (469)
T ss_dssp HHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGG--------GGEEEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCc--------cceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 98887643222 36999999999999999999999998854 69999999999999999999999999999
Q ss_pred HhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 321 HFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 321 yfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
||||++|+|||||||||||||+|+||+
T Consensus 242 yfrdd~G~dVLl~~DsltR~A~A~rEi 268 (469)
T 2c61_A 242 YLAYEHGMHVLVILTDITNYAEALRQM 268 (469)
T ss_dssp HHHHHHCCEEEEEEECHHHHHHHHTTS
T ss_pred HHHHhcCCeEEEEEeCHHHHHHHHHHH
Confidence 999547999999999999999999997
No 10
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=100.00 E-value=4.7e-65 Score=513.59 Aligned_cols=250 Identities=22% Similarity=0.300 Sum_probs=223.9
Q ss_pred CceeeEEEEECCEEEEEeCCCChhhh-hce-EEee-cCceeEEEEeeeccCceEEEEeecCCCCCC-CCCEEEecCCCce
Q 018957 85 GAIGQVCQVIGAVVDVRFDEGLPPIL-TAL-EVVD-HSVRLVLEVAQHMGEGVVRTIAMDGTEGLV-RGQRVLNTGSPIT 160 (348)
Q Consensus 85 ~~~G~V~~V~G~vV~v~f~~glp~i~-~~l-ev~~-~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~-~G~~V~~tg~~l~ 160 (348)
..+|+|++|.|++++++ |++.+. +++ ++.. ++.....||+.+ +++.+.+++|+++.||+ .|+.|.+||++++
T Consensus 6 ~~~g~V~~v~g~~v~v~---gl~~~~~ge~v~i~~~~g~~~~geVv~~-~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~ 81 (464)
T 3gqb_B 6 KEYTGITYISGPLLFVE---NAKDLAYGAIVDIKDGTGRVRGGQVIEV-SEEYAVIQVFEETTGLDLATTSVSLVEDVAR 81 (464)
T ss_dssp CCBCCEEEEETTEEEEE---SCTTSCTTCEEEEECTTSCEEEEEEEEE-ESSEEEEEESSCCTTCCSSSCEEEEEESSCE
T ss_pred ceeeEEEEEECCEEEEe---cCCCCCcCCEEEEEcCCCCEEEEEEEEE-eCCeEEEEEecCccccccCCCEEEECCCCcE
Confidence 35799999999999997 766443 333 3321 223467888865 66778899999999999 9999999999999
Q ss_pred ecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHH
Q 018957 161 VPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKT 240 (348)
Q Consensus 161 VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT 240 (348)
||||++|||||+|++|+|||+++++..+.++||++.||+|++|.++++||+||||+||+|+||+||||++|||++|+|||
T Consensus 82 vpvg~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg~G~GKt 161 (464)
T 3gqb_B 82 LGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPAN 161 (464)
T ss_dssp EEECSTTTTEEEETTCCBCSSSCCCCCSEEEETTCCCBCGGGBCCCCCBCBCSCHHHHTTSCCBTTCBCCEEEETTSCHH
T ss_pred EEeChHhcCCEeccCCcccCCCccccCcceeeccCCCCChhhccCccccccCcceeeecccccccCCEEEEecCCCCCch
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC-------C----EEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHH
Q 018957 241 VLIMELINNVAKAHG-------G----FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARA 309 (348)
Q Consensus 241 ~L~~~ii~n~a~~~~-------~----~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~ 309 (348)
+|+.+|++ ++++|+ | +|||++||||+||+++|+++|.+.|++ +||++|++|+|+||.+|+
T Consensus 162 ~L~~~Ia~-~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~--------~rtvvv~~t~d~p~~~r~ 232 (464)
T 3gqb_B 162 EIAAQIAR-QATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGAL--------SRSVLFLNKADDPTIERI 232 (464)
T ss_dssp HHHHHHHH-HCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGG--------GGEEEEEEETTSCTHHHH
T ss_pred HHHHHHHH-HHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccc--------cceEEEEECCCCCHHHHH
Confidence 99987665 444421 3 899999999999999999999999854 699999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 310 RVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 310 ~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
++||+|+|+||||||++|+||||+|||+||||+|++|+
T Consensus 233 ~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr~A~A~REi 270 (464)
T 3gqb_B 233 LTPRMALTVAEYLAFEHDYHVLVILTDMTNYSEALREI 270 (464)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHH
Confidence 99999999999999956999999999999999999986
No 11
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=100.00 E-value=1.1e-61 Score=491.61 Aligned_cols=254 Identities=68% Similarity=1.070 Sum_probs=238.6
Q ss_pred ceeeEEEEECCEEEEEeCCC-ChhhhhceEEee-c--Cc----eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCC
Q 018957 86 AIGQVCQVIGAVVDVRFDEG-LPPILTALEVVD-H--SV----RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGS 157 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~g-lp~i~~~lev~~-~--~~----~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~ 157 (348)
.+|+|++|+|++|+++|+++ +|.+++.+++.. . +. ++++||+++++++.+++++|+++.||++|+.|.+||+
T Consensus 2 ~~G~v~~v~G~vv~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~ev~~~~~~~~v~~~~~~~t~gl~~G~~V~~tg~ 81 (473)
T 1sky_E 2 TRGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRGMEVIDTGA 81 (473)
T ss_dssp CEEEEEEEETTEEEEEESTTCCCCTTEEEEEEECCSSTTCCCEEEEEEEEEEEETTEEEEEESSCCTTCCTTCEEEEEEE
T ss_pred CceEEEEEECcEEEEEecCCcccccCCEEEEEecCCCCCccccceEEEEeEEecCCcEEEEEecCccCCCCCCEEEEcCC
Confidence 36999999999999999854 888887777754 2 22 5899999999999999999999999999999999999
Q ss_pred CceecCCccccccEEeeeCcccccCCCCccc-ccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCC
Q 018957 158 PITVPVGRVTLGRIMNVIGEPIDEKGDLKTE-HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG 236 (348)
Q Consensus 158 ~l~VpVG~~lLGRViD~lG~PiD~~g~i~~~-~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~G 236 (348)
+++||||++|||||+|++|+|||+++++... ++||+++++|++++|.++++||+||||+||.|+|++||||++|||++|
T Consensus 82 ~~~vpvg~~llGrv~d~lG~piD~~g~i~~~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~L~pi~kGq~~~i~G~sG 161 (473)
T 1sky_E 82 PISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAG 161 (473)
T ss_dssp ECEEECSGGGTTCEECTTSCBCSSSCCCCTTSCEEESCCCCCCGGGBCCSCCEECCSCHHHHHHSCEETTCEEEEECCSS
T ss_pred cceeeccccceeeEEeecCCccCcccccCCCceeecccccCcchhhhcccCccccccchHHHHHhhhccCCEEEEECCCC
Confidence 9999999999999999999999999998776 789999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHH
Q 018957 237 VGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316 (348)
Q Consensus 237 vGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~ 316 (348)
+|||+|+.++++|+++.+.++|||++||||++|+.+++++|.+.+++ +||++|++++|+||++|++++++++
T Consensus 162 vGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l--------~~tvvv~~~~~d~pg~r~~~~~~~l 233 (473)
T 1sky_E 162 VGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVI--------SKTAMVFGQMNEPPGARMRVALTGL 233 (473)
T ss_dssp SCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGG--------GGEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhcCCc--------ceeEEEEEcCCCCHHHHHHHHHHHH
Confidence 99999999999998877789999999999999999999999998854 6999999999999999999999999
Q ss_pred HHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 317 TVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 317 tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
++||||||++|+|||||+|||||||+|++|+
T Consensus 234 tiAEyFrd~~G~~VLl~~D~itR~a~A~rei 264 (473)
T 1sky_E 234 TMAEYFRDEQGQDGLLFIDNIFRFTQAGSEV 264 (473)
T ss_dssp HHHHHHHHHSCCEEEEEEECTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcEEEEeccHHHHHHHHHHH
Confidence 9999999967999999999999999999986
No 12
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=100.00 E-value=1.8e-61 Score=497.11 Aligned_cols=251 Identities=25% Similarity=0.375 Sum_probs=213.1
Q ss_pred eeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCcc
Q 018957 87 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRV 166 (348)
Q Consensus 87 ~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~~ 166 (348)
.|+|++|.|++|++++..+ +.++..+++ . +.++..||+.+.++ .+.+++|++|.||++|++|.+||++++||||++
T Consensus 10 ~G~V~~V~G~vv~v~g~~~-~~~gE~v~v-~-~~~l~gEVi~~~~d-~a~i~v~e~t~Gl~~G~~V~~tG~~lsV~vG~~ 85 (600)
T 3vr4_A 10 IGKIIKVSGPLVMAENMSE-ASIQDMCLV-G-DLGVIGEIIEMRQD-VASIQVYEETSGIGPGEPVRSTGEALSVELGPG 85 (600)
T ss_dssp CEEEEEEETTEEEEESCTT-SCTTCEEEE-T-TTTEEEEEEEEETT-EEEEEESSCCTTCCTTCEEEECSSSSEEEESTT
T ss_pred ceEEEEEECcEEEEEcCCC-CccCCEEEE-C-CCcEEEEEEEEcCC-cEEEEEccCCCCCCCCCEEEECCCCCEEEeCHH
Confidence 6999999999999984322 233322333 3 24688999998665 567999999999999999999999999999999
Q ss_pred ccccEEeeeCcccccC----C-----------CCcc--------------------------------------------
Q 018957 167 TLGRIMNVIGEPIDEK----G-----------DLKT-------------------------------------------- 187 (348)
Q Consensus 167 lLGRViD~lG~PiD~~----g-----------~i~~-------------------------------------------- 187 (348)
|||||+|++|+|||++ + ++..
T Consensus 86 lLGrV~DglGrPlD~~~~~~g~~~~~~g~~~~~l~~~~~w~f~p~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~ 165 (600)
T 3vr4_A 86 IISQMFDGIQRPLDTFMEVTQSNFLGRGVQLPALDHEKQWWFEATIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGT 165 (600)
T ss_dssp CTTCEECTTCCBHHHHHHHHCSSBCCTTCCCCSSCSSCCEEEEECSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEE
T ss_pred HHhhhhCcCCCcccccccccCccccccCCcCCCCCcccccccCcccccCCEecCCceEEEEecCCceeeeeecCCCCCce
Confidence 9999999999999987 4 1211
Q ss_pred -----------------------------cccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCc
Q 018957 188 -----------------------------EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVG 238 (348)
Q Consensus 188 -----------------------------~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvG 238 (348)
.++||++.+ |++.+|.++++||+||||+||+|+||+||||++|||++|+|
T Consensus 166 v~~i~~g~~~v~~~v~~i~~~~g~~~i~~~~~wpv~~~-~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifgg~g~G 244 (600)
T 3vr4_A 166 VQKIESGSFTIDDPICVIETEQGLKELTMMQKWPVRRG-RPIKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGAG 244 (600)
T ss_dssp EEEECCEEECTTSCCEEEEETTEEEEECSCEEEETTSC-CCCSEEECCCSBCCCCCHHHHHHSCCBTTCEEEEECCTTSC
T ss_pred EEEecCCcceeceeEEEEeccCCcccccccccccccCC-CchhhccCCCceecccchhhhccCCccCCCEEeeecCCCcc
Confidence 124566554 44679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHH
Q 018957 239 KTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTV 318 (348)
Q Consensus 239 KT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~ti 318 (348)
||+|+++|+++ .+.++|||++||||+||++||+++|++.....+| +..++||++|++|+|+||.+|++++|+|+|+
T Consensus 245 KT~L~~~ia~~---~~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G-~~~m~rtvvV~~tsd~p~~~R~~~~~~alti 320 (600)
T 3vr4_A 245 KTVVQHQIAKW---SDVDLVVYVGCGERGNEMTDVVNEFPELIDPNTG-ESLMERTVLIANTSNMPVAAREASIYTGITI 320 (600)
T ss_dssp HHHHHHHHHHH---SSCSEEEEEEEEECHHHHHHHHHHTTTCBCTTTC-SBGGGGEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---cCCCEEEEEEecccHHHHHHHHHHHHhhcccccc-cccccceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 99999988765 2568999999999999999999999873221122 2357899999999999999999999999999
Q ss_pred HHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 319 AEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 319 AEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|||||| +|+|||+++||+||||+|+||+
T Consensus 321 AEyfrd-~G~dVLl~~Ds~tR~A~A~rEi 348 (600)
T 3vr4_A 321 AEYFRD-MGYDVAIMADSTSRWAEALREM 348 (600)
T ss_dssp HHHHHT-TTCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHH-cCCCEEEEecchHHHHHHHHHH
Confidence 999999 7999999999999999999986
No 13
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=100.00 E-value=2.7e-61 Score=494.13 Aligned_cols=251 Identities=28% Similarity=0.391 Sum_probs=213.1
Q ss_pred eeeEEEEECCEEEEEeCCCChhhhhceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCCcc
Q 018957 87 IGQVCQVIGAVVDVRFDEGLPPILTALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRV 166 (348)
Q Consensus 87 ~G~V~~V~G~vV~v~f~~glp~i~~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG~~ 166 (348)
.|+|++|.|++|++++..+ +.++..+++ . +.++..||+++.+++ +.+++|++|.||++|++|.+||++++||||++
T Consensus 3 ~G~V~~V~G~vv~v~g~~~-~~~gE~v~v-~-~~~l~gEVi~~~~d~-~~i~v~e~t~Gl~~G~~V~~tg~~l~V~vG~~ 78 (578)
T 3gqb_A 3 QGVIQKIAGPAVIAKGMLG-ARMYDISKV-G-EEGLVGEIIRLDGDT-AFVQVYEDTSGLKVGEPVVSTGLPLAVELGPG 78 (578)
T ss_dssp EEEEEEEETTEEEEESCTT-CCTTEEEEE-T-TTTEEEEEEEEETTE-EEEEESSCCTTCCTTCEEEEEEEESEEEESTT
T ss_pred eeEEEEEECCEEEEEcCCC-CccCCEEEE-C-CCcEEEEEEEEcCCc-EEEEEcCCCCCCCCCCEEEECCCCCEEEeCHH
Confidence 6999999999999984332 233322333 2 246889999986655 56999999999999999999999999999999
Q ss_pred ccccEEeeeCcccccC----CC----------Cccc--------------------------------------------
Q 018957 167 TLGRIMNVIGEPIDEK----GD----------LKTE-------------------------------------------- 188 (348)
Q Consensus 167 lLGRViD~lG~PiD~~----g~----------i~~~-------------------------------------------- 188 (348)
|||||+|++|+|||++ ++ +..+
T Consensus 79 lLGrV~DglG~PlD~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v~ 158 (578)
T 3gqb_A 79 MLNGIYDGIQRPLERIREKTGIYITRGVVVHALDREKKWAWTPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVK 158 (578)
T ss_dssp CTTCEECTTSCBHHHHHHHHCSBCCTTCCCCSSCSSSCEEEEECCCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEE
T ss_pred HhhhhhCcCCCcccccccccCccccccccCCCcCcccccccccccccCccccccceeeeecccccceecccCCCcCceeE
Confidence 9999999999999987 32 1111
Q ss_pred --------------------------ccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCCCcHHHH
Q 018957 189 --------------------------HYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVL 242 (348)
Q Consensus 189 --------------------------~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L 242 (348)
++||++.+ +++.+|.++++||+||||+||+|+||+||||++|||++|+|||+|
T Consensus 159 ~i~~~G~~~v~~~i~~~~~g~~i~~~~~wPv~~~-~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifg~~g~GKT~l 237 (578)
T 3gqb_A 159 EVKPAGEYTVEEPVVVLEDGTELKMYHTWPVRRA-RPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSVT 237 (578)
T ss_dssp EECCSEEECTTSCSEEETTCCEECSCEEEETTSC-CCCSEEECSCSEECCSCHHHHTTSCEETTCEEEECCCTTSCHHHH
T ss_pred EeccCCcccccceeEEeecCccccccccccccCC-CChHHhccCCCcccccchhhhhcccccCCCEEeeeCCCCccHHHH
Confidence 23556555 346799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHh
Q 018957 243 IMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF 322 (348)
Q Consensus 243 ~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyf 322 (348)
+++|+++ .+.++|||++||||+||++||+++|++.....+| ++.++||++|++|+|+||.+|++++|+|+|+||||
T Consensus 238 ~~~ia~~---~~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G-~~~~~rtvvv~~tsd~p~~~R~~~~~~altiAEyf 313 (578)
T 3gqb_A 238 QQSLAKW---SNADVVVYVGSGERGNEMTDVLVEFPELTDPKTG-GPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYF 313 (578)
T ss_dssp HHHHHHH---SSCSEEEEEEEEECHHHHHHHHTTGGGCBCTTTS-SBSGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc---cCCCEEEEEEecccHHHHHHHHHHHHhhcccccc-cccccceEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 9988765 2568999999999999999999999874221122 23678999999999999999999999999999999
Q ss_pred hhcCCCcEEEEEechhHHHhhhccc
Q 018957 323 RDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 323 rd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
|| +|+|||+++||+||||+|+||+
T Consensus 314 rd-~G~dVLl~~Ds~tR~A~A~rEi 337 (578)
T 3gqb_A 314 RD-QGFSVALMADSTSRWAEALREI 337 (578)
T ss_dssp HH-TTCEEEECCSCHHHHHHHHHHH
T ss_pred HH-cCCCEEEEecChHHHHHHHHHH
Confidence 99 7999999999999999999986
No 14
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=100.00 E-value=2.1e-61 Score=495.14 Aligned_cols=251 Identities=27% Similarity=0.393 Sum_probs=168.6
Q ss_pred ceeeEEEEECCEEEEEeCCCChhhh-hceEEeecCceeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCCCceecCC
Q 018957 86 AIGQVCQVIGAVVDVRFDEGLPPIL-TALEVVDHSVRLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGSPITVPVG 164 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~glp~i~-~~lev~~~~~~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~~l~VpVG 164 (348)
..|+|.+|.|+++.++ |++.+. +++..+. +.++..||+.+ +++.+.+++|+++.||++|++|.+||++++||||
T Consensus 3 ~~G~V~~V~G~iv~~~---g~~~~~~gElv~v~-~~~l~geVi~l-~~d~~~i~v~e~t~Gi~~G~~V~~tg~~lsV~vG 77 (588)
T 3mfy_A 3 AKGRIIRVTGPLVVAD---GMKGAKMYEVVRVG-ELGLIGEIIRL-EGDKAVIQVYEETAGVRPGEPVVGTGASLSVELG 77 (588)
T ss_dssp ---------------------------------------------------------------CCCCCSSSSSCCEEEES
T ss_pred ceeEEEEEECCEEEEE---cCCCCccCCEEEEc-CCceEEEEEEe-cCCeEEEEEccCCCCCCCCCEEEEcCCCCEEEeC
Confidence 4699999999999986 776443 3332222 23578888876 5666779999999999999999999999999999
Q ss_pred ccccccEEeeeCcccccCCCC--------------c--------------------------------------------
Q 018957 165 RVTLGRIMNVIGEPIDEKGDL--------------K-------------------------------------------- 186 (348)
Q Consensus 165 ~~lLGRViD~lG~PiD~~g~i--------------~-------------------------------------------- 186 (348)
++|||||+|++|+|||+++++ .
T Consensus 78 ~gLLGrV~DglgrPLd~~~~~~g~~~~~g~~~~~l~~~~~w~f~p~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g 157 (588)
T 3mfy_A 78 PRLLTSIYDGIQRPLEVIREKTGDFIARGVTAPALPRDKKWHFIPKAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEG 157 (588)
T ss_dssp TTCTTCEEETTCCSSSSCCCCCSSSCCCCCCCCSSCSSCCEEEEECCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCE
T ss_pred HHHHhhccCCCCCcccCcccccccccccccccCccccccccccccccccCcccccCceEEEEecccceeeeeecCCCCCc
Confidence 999999999999999997431 0
Q ss_pred -------------------------------ccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCC
Q 018957 187 -------------------------------TEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGA 235 (348)
Q Consensus 187 -------------------------------~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~ 235 (348)
..++||++.++| +++|.++++||+||||+||+|+||+||||++|||++
T Consensus 158 ~v~~i~~~g~~~v~~~i~~i~~~~g~~~~i~~~~~wpv~~~~p-~~~R~~~~epl~TGirvID~l~PigkGqr~~I~g~~ 236 (588)
T 3mfy_A 158 EIVEIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRP-YKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPA 236 (588)
T ss_dssp EEEEECCSEEECTTSEEEEEECTTCCEEEEESCEEEETTSCCC-CSEEECSCSEECCSCHHHHHHSCEETTCEEEECSCC
T ss_pred eEEEeccCCcccccceEEEEecCCCccccccccccccccCCCc-hhhhccCCcccccCcchhhccCCcccCCeEEeecCC
Confidence 012467765554 689999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHH
Q 018957 236 GVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTG 315 (348)
Q Consensus 236 GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a 315 (348)
|+|||+|+++|+++ .+.++|||++||||+||++||+++|++.....++ +..++||++|++|+|+||.+|++++|+|
T Consensus 237 g~GKT~L~~~ia~~---~~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g-~~~m~rtvvV~~tsd~p~~~r~~~~~~a 312 (588)
T 3mfy_A 237 GSGKTVTQHQLAKW---SDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG-KPLMERTVLIANTSNMPVAAREASIYTG 312 (588)
T ss_dssp SHHHHHHHHHHHHH---SSCSEEEEEECCSSSSHHHHHHHHTTTCEETTTT-EEGGGGEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhc---cCCCEEEEEEecccHHHHHHHHHHHHHhcccccc-cccccceEEEEECCCCCHHHHHHHHHHH
Confidence 99999999987764 3568999999999999999999999873221111 2357899999999999999999999999
Q ss_pred HHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 316 LTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 316 ~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
+|+|||||| +|+|||+++||+||||+|+||+
T Consensus 313 ~tiAEyfrd-~G~dVLl~~DsltR~A~A~rEi 343 (588)
T 3mfy_A 313 ITIAEYFRD-MGYDVALMADSTSRWAEALREI 343 (588)
T ss_dssp HHHHHHHHH-TTCEEEEEEECTTTCCCCC---
T ss_pred HHHHHHHHH-cCCCEEEeecchHHHHHHHHHH
Confidence 999999999 7999999999999999999997
No 15
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=100.00 E-value=3.8e-44 Score=355.51 Aligned_cols=183 Identities=18% Similarity=0.279 Sum_probs=156.6
Q ss_pred CCCCCCCEEEecCCCceecCCccccccEEeeeCccccc-CCCCcccccccccCCCcchhhccccc-ceeecceeeeecee
Q 018957 144 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDE-KGDLKTEHYLPIHREAPAFVEQATEQ-QILVTGIKVVDLLA 221 (348)
Q Consensus 144 ~GL~~G~~V~~tg~~l~VpVG~~lLGRViD~lG~PiD~-~g~i~~~~~~pi~~~~p~~~~R~~~~-e~l~TGIkvID~l~ 221 (348)
.+|+.||.|....++.+-.--..-|+||.+++|++.+. ......++..|+ +|.+|..++ ++++||+|+||+|+
T Consensus 96 ~~lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng~~p~~~~~r~~fe~l~Pi-----~P~~R~~le~e~~~tGiraID~l~ 170 (427)
T 3l0o_A 96 FNLNTGDIISGVIRKPKEGEKYFAMIKIEAINYRPVEAVNDRVNFDNLTPD-----YPRERFILETDPKIYSTRLIDLFA 170 (427)
T ss_dssp TTCCTTCEEEEEEECCCSSSCSEEEEEEEEETTEEC----CCCCGGGSCEE-----CCCSBCCCCCSTTCHHHHHHHHHS
T ss_pred cCCCCCCEEEEEEeCCCCCcccccceEEEecCCCChHHhccccccccCCCC-----Cchhhccccccchhccchhhhhcc
Confidence 69999999998877666544445778999999988775 333334444444 589999998 99999999999999
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCC-EEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEec
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQ 300 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~-~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~t 300 (348)
|||||||++|||++|+|||+|+++|+++.+++|.+ .|||++||||++|+++|+++| +.+||++|
T Consensus 171 PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~---------------~G~VV~at 235 (427)
T 3l0o_A 171 PIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIREST---------------NAIVIAAP 235 (427)
T ss_dssp CCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSC---------------CSEEEECC
T ss_pred cccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHh---------------CCeEEEEC
Confidence 99999999999999999999999999887766777 579999999999998766554 13799999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 301 MNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 301 sdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
+|+||.+|++++|+|+|+|||||| +|+|||+++|||||||+|+||+
T Consensus 236 adep~~~r~~~a~~altiAEyfrd-~G~dVLil~DslTR~A~A~rEv 281 (427)
T 3l0o_A 236 FDMPPDKQVKVAELTLEMAKRLVE-FNYDVVILLDSLTRLARVYNIV 281 (427)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHH-TTCEEEEEEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEecccchHHHHHHHHH
Confidence 999999999999999999999999 8999999999999999999986
No 16
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=100.00 E-value=2.3e-41 Score=340.50 Aligned_cols=247 Identities=23% Similarity=0.382 Sum_probs=212.8
Q ss_pred ceeeEEEEECCEEEEEeCCCChhhhhceEEee-cCc---eeEEEEeeeccCceEEEEeecCCCCCCCCCEEEecCC----
Q 018957 86 AIGQVCQVIGAVVDVRFDEGLPPILTALEVVD-HSV---RLVLEVAQHMGEGVVRTIAMDGTEGLVRGQRVLNTGS---- 157 (348)
Q Consensus 86 ~~G~V~~V~G~vV~v~f~~glp~i~~~lev~~-~~~---~~~~EVv~~lg~~~V~~i~~~~t~GL~~G~~V~~tg~---- 157 (348)
.+|+|++|.|+++++++. .+.+.+.+++.. .+. ...+||+. ++++.+++++|+++.||++|+.|.+||+
T Consensus 9 ~~g~v~~v~g~~~~~~~~--~~~~~e~~~~~~~~~~~~~~~~~ev~~-~~~~~~~~~~~~~~~gl~~g~~v~~~~~~~~~ 85 (438)
T 2dpy_A 9 RYGRLTRATGLVLEATGL--QLPLGATCIIERQDGPETKEVESEVVG-FNGQRLFLMPLEEVEGILPGARVYARNGHGDG 85 (438)
T ss_dssp CCEEEEECSSSSEEEESC--CCCSSCEEEEEECSTTSCEEEEEEEEE-CCTTCEEEEESSCCTTCCTTEEEEEC------
T ss_pred eeeEEEEEECcEEEEEeC--CCCCCCEEEEecCCCCccccEEEEEEE-EcCCEEEEEEccCCCCCCCCCEEEECCCcccc
Confidence 479999999999999854 344444355543 222 57889996 6888999999999999999999999999
Q ss_pred ---CceecCCccccccEEeeeCcccccCCCCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecC
Q 018957 158 ---PITVPVGRVTLGRIMNVIGEPIDEKGDLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGG 234 (348)
Q Consensus 158 ---~l~VpVG~~lLGRViD~lG~PiD~~g~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~ 234 (348)
++++|+|+++||||+|++|+|+|+++++....+||++.++|++.++..++.++.||+++||.++|+++||+++|||+
T Consensus 86 ~~~~~~v~~g~~~lgrv~~~lg~p~d~~~~~~~~~~~~i~~~~~~~l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG~ 165 (438)
T 2dpy_A 86 LQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAG 165 (438)
T ss_dssp ----CEEECSGGGTTEEECTTCCBSSSSCCCCCSCEEESCCCCCCTTTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEEEC
T ss_pred ccccEEEEcchhhhhhhhhccCCccCCCCCccccccccccCCCCCceEEeccceecCCCceEEeeeEEecCCCEEEEECC
Confidence 99999999999999999999999998887777899999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHH
Q 018957 235 AGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLT 314 (348)
Q Consensus 235 ~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~ 314 (348)
+|+|||||+..|+... +.+..+|.++|+|++|+.++++++.+.+ .+++++.+++|+++|+..++.+++.
T Consensus 166 sGsGKSTLl~~Iag~~---~~~~G~i~~~G~r~~ev~~~~~~~~~~~--------~l~r~i~~v~q~~~~~~~~~~v~~~ 234 (438)
T 2dpy_A 166 SGVGKSVLLGMMARYT---RADVIVVGLIGERGREVKDFIENILGPD--------GRARSVVIAAPADVSPLLRMQGAAY 234 (438)
T ss_dssp TTSSHHHHHHHHHHHS---CCSEEEEEEESCCHHHHHHHHHTTTHHH--------HHHTEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhccc---CCCeEEEEEeceecHHHHHHHHhhcccc--------ccCceEEEEECCCCCHHHHHHHHHH
Confidence 9999999987666542 4577899999999999988766543322 2358899999999999999999999
Q ss_pred HHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 315 GLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 315 a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
++++||||++ ++++|+.++|+++||+++++++
T Consensus 235 ~~~~ae~~~~-~~~~v~~~ld~l~~lS~g~qrv 266 (438)
T 2dpy_A 235 ATRIAEDFRD-RGQHVLLIMDSLTRYAMAQREI 266 (438)
T ss_dssp HHHHHHHHHT-TTCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCHHHHHHhHHHHHHHHHHH
Confidence 9999999999 7999999999999999998654
No 17
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=100.00 E-value=6e-40 Score=325.77 Aligned_cols=183 Identities=19% Similarity=0.262 Sum_probs=149.1
Q ss_pred CCCCCCCEEEecCCCceecCCccccccEEeeeCccccc-CCCCcccccccccCCCcchhhccccc----ceeecceeeee
Q 018957 144 EGLVRGQRVLNTGSPITVPVGRVTLGRIMNVIGEPIDE-KGDLKTEHYLPIHREAPAFVEQATEQ----QILVTGIKVVD 218 (348)
Q Consensus 144 ~GL~~G~~V~~tg~~l~VpVG~~lLGRViD~lG~PiD~-~g~i~~~~~~pi~~~~p~~~~R~~~~----e~l~TGIkvID 218 (348)
.+|+.||.|...-++.+=.--..-|-+|-...|.+.+. ++.+..++..|++ |.+|..++ +|++||||+||
T Consensus 92 ~~lr~gd~v~g~~r~~~~~ER~faLl~v~~vn~~~pe~~~~ri~Fe~ltp~y-----P~er~~Le~~~~~~~~tGiraID 166 (422)
T 3ice_A 92 FNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLH-----ANSRLRMERGNGSTEDLTARVLD 166 (422)
T ss_dssp HTCCTTCEEEEEEECCCSSCCSEEEEEEEEESSSCHHHHTTSCCTTTSCEES-----CCSBCCCCCTTCCTTHHHHHHHH
T ss_pred cCCCCCCEEEEEEeCCCccchHHHHhccCcccCCChhhhcCCceeccccccC-----CCCccccccCCCCcccccceeee
Confidence 58999999987654433211111222444445555443 4556666667777 45666666 89999999999
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCC-EEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEE
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGG-FSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALV 297 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~-~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV 297 (348)
+++|++||||++|||++|+|||+|+++++++.+++|.+ .|||++||||++|+++|++++ +++||
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~---------------~~~vV 231 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV---------------KGEVV 231 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTC---------------SSEEE
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHh---------------CeEEE
Confidence 99999999999999999999999999998887777777 589999999999998865443 58999
Q ss_pred EecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 298 YGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 298 ~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
++|+|+||.+|++++++|+++|||||| +|+|||+++|||||||+|++|+
T Consensus 232 ~atadep~~~r~~~a~~alt~AEyfrd-~G~dVLil~DslTR~A~A~rev 280 (422)
T 3ice_A 232 ASTFDEPASRHVQVAEMVIEKAKRLVE-HKKDVIILLDSITRLARAYNTV 280 (422)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHHH-TSCEEEEEEECHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCEEEEEeCchHHHHHHHHH
Confidence 999999999999999999999999999 8999999999999999999986
No 18
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=100.00 E-value=2e-36 Score=296.21 Aligned_cols=177 Identities=30% Similarity=0.495 Sum_probs=160.2
Q ss_pred CceecCCccccccEEeeeCcccccCC-CCcccccccccCCCcchhhcccccceeecceeeeeceeecccCceeEeecCCC
Q 018957 158 PITVPVGRVTLGRIMNVIGEPIDEKG-DLKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAG 236 (348)
Q Consensus 158 ~l~VpVG~~lLGRViD~lG~PiD~~g-~i~~~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkGQr~gIfg~~G 236 (348)
+++||||++|||||+|++|+|||+++ ++...++||++.++|++.+|..+++++.||+++||.++|+++||+++|||++|
T Consensus 2 ~~~~~vg~~~lGrv~~~~g~p~d~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nG 81 (347)
T 2obl_A 2 SHKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSG 81 (347)
T ss_dssp CCEEEECGGGTTCEECTTSCBCSCCSSCCCCCEEEESCCCCSCSTTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTT
T ss_pred CceeecCccccCCEECCCCCcCCCCCCCCCCCCcccccCCCCCCeeecccceecCCCCEEEEeeeeecCCCEEEEECCCC
Confidence 68999999999999999999999998 88778899999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHH
Q 018957 237 VGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGL 316 (348)
Q Consensus 237 vGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~ 316 (348)
+|||||+..|+.+. +.+..+|.++|||.+|+.+++..+.+ ..+++++++++++++|+.+|+.+++.++
T Consensus 82 aGKTTLl~~I~g~~---~~~~g~i~~~G~~~~ev~~~i~~~~~---------~~~~~~v~~~~~~~~~~~~r~~~~~~~~ 149 (347)
T 2obl_A 82 VGKSTLLGMICNGA---SADIIVLALIGERGREVNEFLALLPQ---------STLSKCVLVVTTSDRPALERMKAAFTAT 149 (347)
T ss_dssp SSHHHHHHHHHHHS---CCSEEEEEEESCCHHHHHHHHTTSCH---------HHHTTEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCC---CCCEEEEEEecccHHHHHHHHHhhhh---------hhhhceEEEEECCCCCHHHHHHHHHHHH
Confidence 99999987766542 46788999999999999776544211 1246899999999999999999999999
Q ss_pred HHHHHhhhcCCCcEEEEEechhHHHhhhccc
Q 018957 317 TVAEHFRDAEGQDVLLFIDNIFRFTQVSFIL 347 (348)
Q Consensus 317 tiAEyfrd~~G~dVLli~DslTR~A~A~~e~ 347 (348)
++||||+| +|+||++++|+++||++|++++
T Consensus 150 ~~ae~~~~-~~~~vl~~ld~~~~lS~g~r~v 179 (347)
T 2obl_A 150 TIAEYFRD-QGKNVLLMMDSVTRYARAARDV 179 (347)
T ss_dssp HHHHHHHT-TTCEEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHh-ccccHHHHHhhHHHHHHHHHHH
Confidence 99999999 7999999999999999999765
No 19
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.83 E-value=3e-05 Score=75.38 Aligned_cols=111 Identities=14% Similarity=0.220 Sum_probs=73.4
Q ss_pred ceeecceeeeeceee------cccCceeEeecCCCCcHHHHHHHHHHHHHhhc-CCEEEEEEeeccchhHHHHHHHHHHc
Q 018957 208 QILVTGIKVVDLLAP------YQRGGKIGLFGGAGVGKTVLIMELINNVAKAH-GGFSVFAGVGERTREGNDLYREMIES 280 (348)
Q Consensus 208 e~l~TGIkvID~l~P------igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~-~~~~V~~~IGER~rEv~~~~~e~~~~ 280 (348)
+.+.||+..+|.++- +.+| .+.|+|++|+|||+|+.+++.+.++.. +..++|+-.-+..+.. .+.+.
T Consensus 5 ~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~l 78 (333)
T 3io5_A 5 DVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSM 78 (333)
T ss_dssp -CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHT
T ss_pred CEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHh
Confidence 567899999999998 8899 999999999999999999998876542 5678887544443332 24555
Q ss_pred CccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHh--hhcCCCcEEEEEechhHHH
Q 018957 281 GVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHF--RDAEGQDVLLFIDNIFRFT 341 (348)
Q Consensus 281 ~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyf--rd~~G~dVLli~DslTR~A 341 (348)
|+- .++ ++++ +.+ ..++. ++.+++.+ .. +++--|||+||++-+.
T Consensus 79 Gvd-------~d~-llv~-~~~--~~E~~-----~l~i~~~l~~i~-~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 79 GVD-------PER-VIHT-PVQ--SLEQL-----RIDMVNQLDAIE-RGEKVVVFIDSLGNLA 124 (333)
T ss_dssp TCC-------GGG-EEEE-ECS--BHHHH-----HHHHHHHHHTCC-TTCCEEEEEECSTTCB
T ss_pred CCC-------HHH-eEEE-cCC--CHHHH-----HHHHHHHHHHhh-ccCceEEEEecccccc
Confidence 531 123 3333 222 23332 13333333 22 4778899999998764
No 20
>1pyv_A ATP synthase beta chain, mitochondrial precursor; hydrolase; NMR {Nicotiana plumbaginifolia} SCOP: j.36.4.1
Probab=97.80 E-value=8.1e-06 Score=56.87 Aligned_cols=51 Identities=53% Similarity=0.683 Sum_probs=34.0
Q ss_pred ChhhhHhHHHhhhhcccCCC--CCCCCCCCc-CCCcccccCCchhhhhhhHHHH
Q 018957 1 MASRRLLSSLLRSSVRRSPS--KSSLSNSSV-FSPAATRRASPYGHLLSRVSEY 51 (348)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 51 (348)
||+||+|++|+|.+..+..- .-++-+|-+ +.....+|++|.|++++|+.+|
T Consensus 1 masrrllasllrqsaqrggglisrslgnsipksasrassraspkgfllnravqy 54 (54)
T 1pyv_A 1 MASRRLLASLLRQSAQRGGGLISRSLGNSIPKSASRASSRASPKGFLLNRAVQY 54 (54)
T ss_dssp -CCSHHHHHHHHHHHTTSSCSSSSTGGGGTTTTSTTTSTTCSHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHhCCceeehhhcccCcchhhhhhcccCccchhhhhhhcC
Confidence 89999999999988776221 111111111 2334578899999999999876
No 21
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.77 E-value=2.1e-05 Score=70.06 Aligned_cols=64 Identities=31% Similarity=0.454 Sum_probs=52.6
Q ss_pred ceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHH
Q 018957 208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGN 271 (348)
Q Consensus 208 e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~ 271 (348)
+-+.||++.+|-++. +.+|+-+.|.|++|+|||+|+.+++.|.+...+..++|.-.-+..+++.
T Consensus 10 ~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~ 75 (251)
T 2zts_A 10 RRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLR 75 (251)
T ss_dssp CEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHH
T ss_pred CeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHH
Confidence 458999999999997 8999999999999999999999998876554455677777777665543
No 22
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.73 E-value=8.1e-05 Score=66.17 Aligned_cols=43 Identities=28% Similarity=0.330 Sum_probs=39.3
Q ss_pred ceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 208 QILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 208 e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
+.+.||+..+|-++ -+.+|+-++|.|++|+|||+|+..++.+.
T Consensus 4 ~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 4 IQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp CEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999998 58899999999999999999999988764
No 23
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.64 E-value=4.2e-05 Score=67.12 Aligned_cols=61 Identities=28% Similarity=0.373 Sum_probs=47.0
Q ss_pred ceeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchh
Q 018957 208 QILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE 269 (348)
Q Consensus 208 e~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rE 269 (348)
+.+.||++.+|-++. +.+|+-++|.|++|+|||||+..++.+.+.. +.-++|...-+...+
T Consensus 3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~-~~~v~~~~~~~~~~~ 65 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD-GDPCIYVTTEESRDS 65 (235)
T ss_dssp CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH-TCCEEEEESSSCHHH
T ss_pred ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC-CCeEEEEEcccCHHH
Confidence 467899999999985 8899999999999999999999988766543 334555554443333
No 24
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.60 E-value=5.2e-05 Score=67.61 Aligned_cols=45 Identities=31% Similarity=0.448 Sum_probs=39.3
Q ss_pred cceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957 207 QQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 207 ~e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
-+.+.||+..+|-++ -+-+|+-++|+|++|+|||||+..++.+..
T Consensus 9 ~~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 9 VRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp CCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 366899999999887 699999999999999999999998875443
No 25
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.59 E-value=0.00025 Score=68.28 Aligned_cols=59 Identities=24% Similarity=0.213 Sum_probs=46.9
Q ss_pred cceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHHHhh-----cCCEEEEEEeec
Q 018957 207 QQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKA-----HGGFSVFAGVGE 265 (348)
Q Consensus 207 ~e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~-----~~~~~V~~~IGE 265 (348)
.+.+.||++.+|-++ -+-+|+-+.|+|++|+|||+|+.+++.+.+.. .+.-++|+-.-+
T Consensus 101 ~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 101 VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp CCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred cceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 578999999999998 58899999999999999999999998875331 234556664433
No 26
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.58 E-value=0.00021 Score=62.78 Aligned_cols=43 Identities=33% Similarity=0.335 Sum_probs=38.3
Q ss_pred ceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 208 QILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 208 e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
+.+.||+..+|-++ -+.+|+.++|+|++|+|||||+..++.+.
T Consensus 5 ~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 5 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp CEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999777 68899999999999999999999887644
No 27
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.58 E-value=0.00018 Score=69.86 Aligned_cols=111 Identities=23% Similarity=0.382 Sum_probs=72.1
Q ss_pred cceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCcc
Q 018957 207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283 (348)
Q Consensus 207 ~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~ 283 (348)
.+.+.||+..+|-++. +-+|.-+.|+|++|+|||+|+.+++.+.++. +..++|+-..+..+.. + ..+.|+-
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-g~~vlyi~~E~~~~~~---~--a~~lG~~ 112 (349)
T 2zr9_A 39 ISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGIAAFIDAEHALDPE---Y--AKKLGVD 112 (349)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHH---H--HHHTTCC
T ss_pred CCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCcCHH---H--HHHcCCC
Confidence 4689999999999886 6699999999999999999999999876543 4456666554433332 1 2334421
Q ss_pred ccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (348)
Q Consensus 284 ~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A 341 (348)
.++ +.+.. .+ ..++ .+.+++.+.. +++--+||+|+++.+.
T Consensus 113 -------~~~-l~i~~-~~--~~e~------~l~~~~~l~~-~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 113 -------TDS-LLVSQ-PD--TGEQ------ALEIADMLVR-SGALDIIVIDSVAALV 152 (349)
T ss_dssp -------GGG-CEEEC-CS--SHHH------HHHHHHHHHT-TTCCSEEEEECGGGCC
T ss_pred -------HHH-eEEec-CC--CHHH------HHHHHHHHHh-cCCCCEEEEcChHhhc
Confidence 122 22332 11 2333 2345665654 3455578999998764
No 28
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.56 E-value=0.00016 Score=70.79 Aligned_cols=55 Identities=31% Similarity=0.580 Sum_probs=46.0
Q ss_pred cceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEE
Q 018957 207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG 262 (348)
Q Consensus 207 ~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~ 262 (348)
.+.+.||+..+|-++. +.+|.-+.|+|++|+|||||+.+++.+.+. .+..++|+-
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~-~gg~VlyId 96 (356)
T 3hr8_A 39 VEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK-MGGVAAFID 96 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 3678999999999988 789999999999999999999999987654 334566654
No 29
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.54 E-value=0.00029 Score=67.04 Aligned_cols=125 Identities=15% Similarity=0.119 Sum_probs=73.7
Q ss_pred ccceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHHHhhc-----CCEEEEEEeecc--chhHHHHHHH
Q 018957 206 EQQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAH-----GGFSVFAGVGER--TREGNDLYRE 276 (348)
Q Consensus 206 ~~e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~-----~~~~V~~~IGER--~rEv~~~~~e 276 (348)
..+.+.||+..+|-++ -+-+|+-+.|+|++|+|||+|+.+++.+.+..+ +.-++|+-.-+. .+.+.+ -
T Consensus 85 ~~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~---~ 161 (324)
T 2z43_A 85 NVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN---M 161 (324)
T ss_dssp SCCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH---H
T ss_pred cCCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH---H
Confidence 3578999999999998 588999999999999999999999998754321 345666544432 333333 2
Q ss_pred HHHcCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhh
Q 018957 277 MIESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQV 343 (348)
Q Consensus 277 ~~~~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A 343 (348)
+.+.++- .++.+++ +.+... .. .++.. ..+..++.+..+.++--+||+|+++.+..+
T Consensus 162 ~~~~g~~---~~~~~~~-l~~~~~-~~--~~~~~---~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 162 AKALGLD---IDNVMNN-IYYIRA-IN--TDHQI---AIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HHHTTCC---HHHHHHT-EEEEEC-CS--HHHHH---HHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred HHHhCCC---HHHHhcc-EEEEeC-CC--HHHHH---HHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 3333321 0001112 233322 21 22211 122333333331255678999999988654
No 30
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.45 E-value=8.6e-05 Score=66.00 Aligned_cols=61 Identities=26% Similarity=0.364 Sum_probs=47.6
Q ss_pred ceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchh
Q 018957 208 QILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE 269 (348)
Q Consensus 208 e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rE 269 (348)
+.+.||++.+|-++ -+-+|+-++|.|++|+|||+|+.+++.+.++. +.-++|+..-+...+
T Consensus 3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-~~~v~~~~~e~~~~~ 65 (247)
T 2dr3_A 3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-GEPGIYVALEEHPVQ 65 (247)
T ss_dssp CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-TCCEEEEESSSCHHH
T ss_pred ccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccCCHHH
Confidence 46789999999886 47899999999999999999999998877653 344566654444333
No 31
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.40 E-value=9.3e-05 Score=64.77 Aligned_cols=51 Identities=25% Similarity=0.313 Sum_probs=41.6
Q ss_pred eecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEee
Q 018957 210 LVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG 264 (348)
Q Consensus 210 l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IG 264 (348)
+.||++.+|-++. +.+|+-++|.|++|+|||+|+.+++. . .+.-++|+..-
T Consensus 2 i~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~--~~~~v~~i~~~ 54 (220)
T 2cvh_A 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L--SGKKVAYVDTE 54 (220)
T ss_dssp BCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H--HCSEEEEEESS
T ss_pred cccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H--cCCcEEEEECC
Confidence 6799999999985 99999999999999999999998876 1 23445555443
No 32
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.39 E-value=0.00036 Score=68.37 Aligned_cols=111 Identities=26% Similarity=0.373 Sum_probs=73.0
Q ss_pred cceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCcc
Q 018957 207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283 (348)
Q Consensus 207 ~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~ 283 (348)
.+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+.+++.+.++. +..++|+-.-+..+.. + +.+.++-
T Consensus 52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~-g~~vlyi~~E~s~~~~---~--a~~~g~d 125 (366)
T 1xp8_A 52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA-GGTCAFIDAEHALDPV---Y--ARALGVN 125 (366)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHH---H--HHHTTCC
T ss_pred CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-CCeEEEEECCCChhHH---H--HHHcCCC
Confidence 4689999999999987 7799999999999999999999999887653 3456666555443332 1 2333421
Q ss_pred ccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (348)
Q Consensus 284 ~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A 341 (348)
.++ +++. ..+ ..++ .+.+++.+.. ++.--+||+|+++.+.
T Consensus 126 -------~~~-l~i~-~~~--~~e~------~l~~l~~l~~-~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 126 -------TDE-LLVS-QPD--NGEQ------ALEIMELLVR-SGAIDVVVVDSVAALT 165 (366)
T ss_dssp -------GGG-CEEE-CCS--SHHH------HHHHHHHHHT-TTCCSEEEEECTTTCC
T ss_pred -------HHH-ceee-cCC--cHHH------HHHHHHHHHh-cCCCCEEEEeChHHhc
Confidence 122 2233 222 1233 3445566655 3555578899998765
No 33
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.38 E-value=0.00038 Score=67.88 Aligned_cols=111 Identities=20% Similarity=0.321 Sum_probs=70.3
Q ss_pred cceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCcc
Q 018957 207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283 (348)
Q Consensus 207 ~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~ 283 (348)
.+.+.||+..+|-++. +-+|.-+.|.|++|+|||+|+.+++.+.++. +..++|+-.-+..+.. + ..+.++-
T Consensus 41 ~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~-g~~vlyid~E~s~~~~---~--a~~~g~~ 114 (356)
T 1u94_A 41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-GKTCAFIDAEHALDPI---Y--ARKLGVD 114 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEESSCCCCHH---H--HHHTTCC
T ss_pred CCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCCCccHH---H--HHHcCCC
Confidence 4678999999999987 7799999999999999999999999877643 3445555443322221 1 2333421
Q ss_pred ccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (348)
Q Consensus 284 ~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A 341 (348)
.++ +.++ ..+ ..++ .+.+++++.. ++.--+||+|+++.+.
T Consensus 115 -------~~~-l~i~-~~~--~~e~------~~~~~~~l~~-~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 115 -------IDN-LLCS-QPD--TGEQ------ALEICDALAR-SGAVDVIVVDSVAALT 154 (356)
T ss_dssp -------GGG-CEEE-CCS--SHHH------HHHHHHHHHH-HTCCSEEEEECGGGCC
T ss_pred -------hhh-eeee-CCC--CHHH------HHHHHHHHHh-ccCCCEEEEcCHHHhc
Confidence 122 2233 222 2232 3345566654 2444478999998764
No 34
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.34 E-value=0.00053 Score=64.74 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=41.0
Q ss_pred cccceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 205 TEQQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 205 ~~~e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
...+.+.||+..+|-++ -+-+|+-+.|+|++|+|||+|+.+++.+.
T Consensus 75 ~~~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 75 STVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTCCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ccCCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999998 58899999999999999999999998764
No 35
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.31 E-value=0.00049 Score=68.20 Aligned_cols=50 Identities=30% Similarity=0.322 Sum_probs=42.9
Q ss_pred hcccccceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957 202 EQATEQQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 202 ~R~~~~e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
++......+.||+..+|-++ -+-+|+-+.|+|++|+|||||+.+++.+..
T Consensus 152 ~~~~~~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~ 203 (400)
T 3lda_A 152 MRRSELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQ 203 (400)
T ss_dssp HHHHTSCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred hhhccCCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhc
Confidence 34444678999999999998 688999999999999999999998876643
No 36
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.21 E-value=0.00095 Score=64.58 Aligned_cols=49 Identities=29% Similarity=0.299 Sum_probs=41.8
Q ss_pred hcccccceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 202 EQATEQQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 202 ~R~~~~e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
++....+.+.||+..+|-++ -+-+|+-++|+|++|+|||||+..++.+.
T Consensus 105 ~~~~~~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 105 KKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHTCCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhhccCCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33344578999999999985 68899999999999999999999988765
No 37
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.99 E-value=0.00088 Score=77.06 Aligned_cols=114 Identities=18% Similarity=0.297 Sum_probs=77.4
Q ss_pred cccceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957 205 TEQQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (348)
Q Consensus 205 ~~~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~ 281 (348)
...+.+.||+..+|-++. +-+|+-+.|+|++|+|||+|+.+++.+.++ .+.-++|+-.-+...+.. +.+.+
T Consensus 10 ~~~~~isTGi~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~-~G~~vlYI~te~~~~~l~-----~~~lg 83 (1706)
T 3cmw_A 10 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPIY-----ARKLG 83 (1706)
T ss_dssp --CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECTTSCCCHHH-----HHHTT
T ss_pred ccCcccccCcHHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhh-CCCceEEEEecCccHHHH-----HHhhc
Confidence 345789999999999875 899999999999999999999999887654 345688888877766653 22233
Q ss_pred ccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHh
Q 018957 282 VIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (348)
Q Consensus 282 v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~ 342 (348)
. ..++- .++.. + ..++ ...+.+++.. .++.-+||+||++-+..
T Consensus 84 ~-------dl~~i-~i~~p-~--t~e~------l~~ll~~L~~-~~~~~LVVIDSLt~L~~ 126 (1706)
T 3cmw_A 84 V-------DIDNL-LCSQP-D--TGEQ------ALEICDALAR-SGAVDVIVVDSVAALTP 126 (1706)
T ss_dssp C-------CGGGC-EEECC-S--SHHH------HHHHHHHHHH-HTCCSEEEESCSTTCCC
T ss_pred c-------Cccce-eeecc-C--cHHH------HHHHHHHHHh-ccCCCEEEEcchhhhcc
Confidence 1 11222 23322 1 1222 2345566665 46677999999987644
No 38
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.86 E-value=0.00078 Score=62.55 Aligned_cols=54 Identities=20% Similarity=0.176 Sum_probs=41.8
Q ss_pred ceeec-ceeeeece-eecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEE
Q 018957 208 QILVT-GIKVVDLL-APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFA 261 (348)
Q Consensus 208 e~l~T-GIkvID~l-~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~ 261 (348)
.-+.| |+.++|-+ +.+.+|+-++|.|++|+|||||+..++.+.+..++.-++|.
T Consensus 15 ~~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 15 VGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp CCBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 45778 99988865 46889999999999999999999998887654333233343
No 39
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.72 E-value=0.0016 Score=60.00 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=38.9
Q ss_pred ccceeecceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957 206 EQQILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (348)
Q Consensus 206 ~~e~l~TGIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~ 252 (348)
..+.+.||+.-+|-++. +-+|+-++|+|++|+|||||+.+++...+.
T Consensus 9 ~~~~i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 9 ILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp HHHHHHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 45668899988887664 559999999999999999999999876543
No 40
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=96.69 E-value=0.013 Score=54.84 Aligned_cols=69 Identities=10% Similarity=-0.053 Sum_probs=55.5
Q ss_pred eeecceeeeeceee--cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957 209 ILVTGIKVVDLLAP--YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (348)
Q Consensus 209 ~l~TGIkvID~l~P--igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~ 281 (348)
.+.|||.-+|-++- +-+|--++|.|++|+|||+|+.+++.+.++ .++.++|+..-|...++. +.+...|
T Consensus 2 ~i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~-~Ge~~~~~~~~e~~~~l~---~~~~~~G 72 (260)
T 3bs4_A 2 SLSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLK-SDNLVGMFSISYPLQLII---RILSRFG 72 (260)
T ss_dssp CBCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHH-TTCEEEEEECSSCHHHHH---HHHHHTT
T ss_pred cCccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHH-CCCcEEEEEEeCCHHHHH---HHHHHcC
Confidence 35789999998875 558999999999999999999999887665 478999999999887764 3444444
No 41
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.65 E-value=0.0028 Score=73.93 Aligned_cols=116 Identities=17% Similarity=0.300 Sum_probs=79.5
Q ss_pred cccccceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHH
Q 018957 203 QATEQQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIE 279 (348)
Q Consensus 203 R~~~~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~ 279 (348)
+.+..+.+.||+..+|-++- +-+|.-..|+|++|+|||+|+.+++.+.++ .+.-++|+-.-+..++.. +..
T Consensus 8 ~~~~~~~i~TGi~~LD~lLg~GGip~G~vtlI~G~pGsGKT~lalq~a~~~~~-~Ge~vlYI~tEes~~~~r-----a~~ 81 (2050)
T 3cmu_A 8 RSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPIY-----ARK 81 (2050)
T ss_dssp ----CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEECTTSCCCHHH-----HHH
T ss_pred hccCCCeeccCcHHHHHHHhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHhhc-cCCceEEEEccCcchhhH-----Hhh
Confidence 33445789999999999874 779999999999999999999999987754 356789988887776653 233
Q ss_pred cCccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHh
Q 018957 280 SGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (348)
Q Consensus 280 ~~v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~ 342 (348)
.+. ..++- .++.. + ..++ .+.+.+++.. .+.--+||+||++-+..
T Consensus 82 lG~-------dl~~i-~v~~p-~--~~e~------ll~il~~L~~-~~~~~lVVIDSISaL~~ 126 (2050)
T 3cmu_A 82 LGV-------DIDNL-LCSQP-D--TGEQ------ALEICDALAR-SGAVDVIVVDSVAALTP 126 (2050)
T ss_dssp TTC-------CTTTC-EEECC-S--SHHH------HHHHHHHHHH-HTCCSEEEESCGGGCCC
T ss_pred hcc-------Ccccc-eecCC-C--cHHH------HHHHHHHHHh-ccCCcEEEEcChHHhhh
Confidence 332 11232 23322 1 1222 2455667766 46677899999997654
No 42
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.59 E-value=0.0083 Score=56.28 Aligned_cols=99 Identities=11% Similarity=0.114 Sum_probs=54.6
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHHhhc-----CCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEE
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAH-----GGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVY 298 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~-----~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~ 298 (348)
..++-+.|.|++|+|||+|+..+.+...... ....+++-+.. .....+++.++.+.- +.. .
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~l~~~l----~~~-~-------- 107 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH-RETPYRVASAIAEAV----GVR-V-------- 107 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT-SCSHHHHHHHHHHHH----SCC-C--------
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc-CCCHHHHHHHHHHHh----CCC-C--------
Confidence 5677899999999999999998876543211 22345554433 233334444443321 100 0
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHhh
Q 018957 299 GQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQV 343 (348)
Q Consensus 299 ~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~A 343 (348)
.....+...-+ -.+.+++.. .|+.++|++|++-++...
T Consensus 108 ~~~~~~~~~~~------~~l~~~l~~-~~~~~vlilDEi~~l~~~ 145 (387)
T 2v1u_A 108 PFTGLSVGEVY------ERLVKRLSR-LRGIYIIVLDEIDFLPKR 145 (387)
T ss_dssp CSSCCCHHHHH------HHHHHHHTT-SCSEEEEEEETTTHHHHS
T ss_pred CCCCCCHHHHH------HHHHHHHhc-cCCeEEEEEccHhhhccc
Confidence 00111111111 123344555 688999999999887653
No 43
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.56 E-value=0.0018 Score=61.44 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=46.9
Q ss_pred ceeecceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchh
Q 018957 208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTRE 269 (348)
Q Consensus 208 e~l~TGIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rE 269 (348)
+.+.||++.+|-++- +.+|+-+.|.|.+|+|||+|+.+++.+.+..+ .-++|...-+..++
T Consensus 49 ~~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-~~vl~~slE~s~~~ 110 (315)
T 3bh0_A 49 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHSLEMGKKE 110 (315)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT-CEEEEEESSSCHHH
T ss_pred CCccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEECCCCHHH
Confidence 568899999998874 77999999999999999999999998877532 33444444344333
No 44
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.47 E-value=0.0024 Score=74.53 Aligned_cols=113 Identities=19% Similarity=0.337 Sum_probs=75.0
Q ss_pred cccceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957 205 TEQQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (348)
Q Consensus 205 ~~~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~ 281 (348)
...+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+..++.+.++ ++..++|.-.-+-..... ....|
T Consensus 1403 ~~~~~isTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~-~G~~v~Fi~~e~~~~~l~-----a~~~G 1476 (2050)
T 3cmu_A 1403 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPIY-----ARKLG 1476 (2050)
T ss_dssp TSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT-TTCCEEEECTTSCCCHHH-----HHHTT
T ss_pred cccccccCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCcEEEEEcccccCHHH-----HHHcC
Confidence 346789999999999999 889999999999999999999999876554 455666665544322221 33334
Q ss_pred ccccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957 282 VIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (348)
Q Consensus 282 v~~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A 341 (348)
+ ++ ++ +.+.+.+ +.+ .++.+++++.+ +++--+||+|++.-|.
T Consensus 1477 ~-dl------~~--l~v~~~~--~~E------~~l~~~~~lvr-~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1477 V-DI------DN--LLCSQPD--TGE------QALEICDALAR-SGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp C-CT------TT--CEEECCS--SHH------HHHHHHHHHHH-HTCCSEEEESCGGGCC
T ss_pred C-Cc------hh--ceeecCC--hHH------HHHHHHHHHHh-cCCCCEEEEcChhHhc
Confidence 2 11 12 2333444 233 34456666655 3566689999996443
No 45
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.42 E-value=0.0021 Score=63.99 Aligned_cols=58 Identities=22% Similarity=0.272 Sum_probs=45.7
Q ss_pred ceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeec
Q 018957 208 QILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (348)
Q Consensus 208 e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGE 265 (348)
.-+.||+..+|-++ -+.+|+-+.|.|++|+|||+|+.+++.+.+..++.-++|...-+
T Consensus 184 ~~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 184 TGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 56889999999887 37799999999999999999999999988754333344444333
No 46
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.39 E-value=0.0047 Score=71.18 Aligned_cols=111 Identities=21% Similarity=0.335 Sum_probs=74.9
Q ss_pred cceeecceeeeeceee---cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCcc
Q 018957 207 QQILVTGIKVVDLLAP---YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVI 283 (348)
Q Consensus 207 ~e~l~TGIkvID~l~P---igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~ 283 (348)
.+.+.||+..+|-++. +-+|.-+.|.|++|+|||+|+.+++.+.++ .+..++|+-.-+..+.. + +.+.|+-
T Consensus 361 ~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~-~G~~vlyis~E~s~~~~---~--a~~lGvd 434 (1706)
T 3cmw_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHALDPI---Y--ARKLGVD 434 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECTTSCCCHH---H--HHHTTCC
T ss_pred CceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEccCchHHH---H--HHHcCCC
Confidence 5789999999999987 889999999999999999999999988765 34567777655555543 1 3444531
Q ss_pred ccCcccCCCeeEEEEecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHH
Q 018957 284 KLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFT 341 (348)
Q Consensus 284 ~~~~~~~~~rtvvV~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A 341 (348)
.++ +.+ .+.+ ..++. +.+++.+.. ++.--+||+|+++-+.
T Consensus 435 -------~~~-L~i-~~~~--~~e~~------l~~l~~lv~-~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 435 -------IDN-LLC-SQPD--TGEQA------LEICDALAR-SGAVDVIVVDSVAALT 474 (1706)
T ss_dssp -------GGG-CEE-ECCS--SHHHH------HHHHHHHHH-HTCCSEEEESCSTTCC
T ss_pred -------HHH-eEE-cCCC--CHHHH------HHHHHHHHH-hcCCCEEEECCHHHhh
Confidence 122 222 2222 23333 344555554 2444578999998654
No 47
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.22 E-value=0.021 Score=53.40 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=54.9
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHHhhc--CCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecC
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAH--GGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQM 301 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~--~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~ts 301 (348)
.+++-+.|.|++|+|||+|+..++....... ....+|+-+.+.. ...+++.++.+. ++.. ....
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~i~~~----l~~~---------~~~~ 108 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID-TPYRVLADLLES----LDVK---------VPFT 108 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC-SHHHHHHHHTTT----TSCC---------CCSS
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC-CHHHHHHHHHHH----hCCC---------CCCC
Confidence 5678899999999999999998876543322 2345666554332 233444444222 1110 0001
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHh
Q 018957 302 NEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (348)
Q Consensus 302 dep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~ 342 (348)
..+....+ -.+-+++.. .++.++|++|++..+..
T Consensus 109 ~~~~~~~~------~~l~~~l~~-~~~~~vlilDE~~~l~~ 142 (386)
T 2qby_A 109 GLSIAELY------RRLVKAVRD-YGSQVVIVLDEIDAFVK 142 (386)
T ss_dssp SCCHHHHH------HHHHHHHHT-CCSCEEEEEETHHHHHH
T ss_pred CCCHHHHH------HHHHHHHhc-cCCeEEEEEcChhhhhc
Confidence 11111111 122345555 57789999999988764
No 48
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.21 E-value=0.003 Score=62.73 Aligned_cols=56 Identities=21% Similarity=0.175 Sum_probs=43.5
Q ss_pred ceeecceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEe
Q 018957 208 QILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV 263 (348)
Q Consensus 208 e~l~TGIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~I 263 (348)
..+.||+..+|-++- +.+|+-+.|.|++|+|||+|+.+++.+.+..++.-++|...
T Consensus 181 ~~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 181 AGVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp --CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 567899999998874 77999999999999999999999999887533333444433
No 49
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.21 E-value=0.0037 Score=53.43 Aligned_cols=40 Identities=25% Similarity=0.384 Sum_probs=29.1
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEE
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFA 261 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~ 261 (348)
.+.+|+.++|+|++|+|||+|+..++.......+..++|.
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 3567999999999999999999888765532233334454
No 50
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.08 E-value=0.0032 Score=53.89 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=23.5
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|..+.+|+.++|.|++|+|||||+..+..
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 55688999999999999999999987653
No 51
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.97 E-value=0.0049 Score=61.62 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=48.3
Q ss_pred cceeecceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhH
Q 018957 207 QQILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG 270 (348)
Q Consensus 207 ~e~l~TGIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv 270 (348)
..-+.||+..+|-++- +.+|+-+.|.|.+|+|||+|+.+++.+.+.. +.-++|...-+..+++
T Consensus 177 ~~gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlEms~~ql 240 (444)
T 3bgw_A 177 ITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEMGKKEN 240 (444)
T ss_dssp CCSBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSSSCTTHH
T ss_pred CCCcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECCCCHHHH
Confidence 3568899999998874 7899999999999999999999999988764 3344444444444433
No 52
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=95.90 E-value=0.012 Score=59.74 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=38.6
Q ss_pred CceeEeecCCCCcHHHHHHHHHH---HHHhhcCCEEEEEEeeccc-hhHHHHHHHHHHc
Q 018957 226 GGKIGLFGGAGVGKTVLIMELIN---NVAKAHGGFSVFAGVGERT-REGNDLYREMIES 280 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~---n~a~~~~~~~V~~~IGER~-rEv~~~~~e~~~~ 280 (348)
..-++|.|..|+|||+|+..+.+ ...+.+-+..+++-+.+.. ....++++++.+.
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 35689999999999999998875 1223344778888777654 2455666666544
No 53
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.86 E-value=0.004 Score=62.58 Aligned_cols=64 Identities=17% Similarity=0.100 Sum_probs=49.1
Q ss_pred cceeec-ceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhH
Q 018957 207 QQILVT-GIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREG 270 (348)
Q Consensus 207 ~e~l~T-GIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv 270 (348)
...+.| |++.+|-++- +.+|.=+.|.|++|+|||+|+.+++.+.+..++.-++|+..-+..+++
T Consensus 221 ~~~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l 286 (503)
T 1q57_A 221 SVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEET 286 (503)
T ss_dssp TTCSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHH
T ss_pred cCCccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHH
Confidence 346788 9999998864 678999999999999999999999998875434445555554444433
No 54
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.85 E-value=0.0045 Score=60.07 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=46.6
Q ss_pred cceeecceeeeeceee-cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccc
Q 018957 207 QQILVTGIKVVDLLAP-YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267 (348)
Q Consensus 207 ~e~l~TGIkvID~l~P-igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~ 267 (348)
-.-+.||+..+|-++- +.+|+=+.|.|.+|+|||+|+.+++.+.+. + +..|.....|-.
T Consensus 26 ~~gi~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~-g~~Vl~fSlEms 85 (338)
T 4a1f_A 26 VTGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-D-DRGVAVFSLEMS 85 (338)
T ss_dssp CCSBCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-T-TCEEEEEESSSC
T ss_pred cCcccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-c-CCeEEEEeCCCC
Confidence 3578899999998874 889999999999999999999999998875 2 334433444543
No 55
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.85 E-value=0.024 Score=53.96 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=54.4
Q ss_pred cCceeEe--ecCCCCcHHHHHHHHHHHHHhh----cCCE-EEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEE
Q 018957 225 RGGKIGL--FGGAGVGKTVLIMELINNVAKA----HGGF-SVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALV 297 (348)
Q Consensus 225 kGQr~gI--fg~~GvGKT~L~~~ii~n~a~~----~~~~-~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV 297 (348)
.++-+.| .|++|+|||+|+..+.+..... +.++ ++|+-+.+. ....++++++.+. ++.. .
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~----l~~~-~------- 115 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA-PNLYTILSLIVRQ----TGYP-I------- 115 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC-CSHHHHHHHHHHH----HTCC-C-------
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC-CCHHHHHHHHHHH----hCCC-C-------
Confidence 4566777 8999999999999887654321 1133 466655443 3344566665432 1110 0
Q ss_pred EecCCCCHHHHHHHHHHHHHHHHHhhhcCCCcEEEEEechhHHHh
Q 018957 298 YGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQ 342 (348)
Q Consensus 298 ~~tsdep~~~r~~a~~~a~tiAEyfrd~~G~dVLli~DslTR~A~ 342 (348)
.....+... ..-.+.+++.. .++.++|++||+-.+..
T Consensus 116 -~~~~~~~~~------~~~~l~~~l~~-~~~~~llvlDe~~~l~~ 152 (412)
T 1w5s_A 116 -QVRGAPALD------ILKALVDNLYV-ENHYLLVILDEFQSMLS 152 (412)
T ss_dssp -CCTTCCHHH------HHHHHHHHHHH-HTCEEEEEEESTHHHHS
T ss_pred -CCCCCCHHH------HHHHHHHHHHh-cCCeEEEEEeCHHHHhh
Confidence 000111111 11223345554 58899999999977653
No 56
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.74 E-value=0.006 Score=61.82 Aligned_cols=57 Identities=23% Similarity=0.259 Sum_probs=41.5
Q ss_pred ceeecceeeeece-e-ecccCceeEeecCCCCcHHHHHHHHH-HHHHhhcCCEEEEEEeecc
Q 018957 208 QILVTGIKVVDLL-A-PYQRGGKIGLFGGAGVGKTVLIMELI-NNVAKAHGGFSVFAGVGER 266 (348)
Q Consensus 208 e~l~TGIkvID~l-~-PigkGQr~gIfg~~GvGKT~L~~~ii-~n~a~~~~~~~V~~~IGER 266 (348)
+.+.||+.++|-+ + .+.+|+..+|.|++|+|||||+..++ ....+.. .-.||+. |+.
T Consensus 19 ~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~-~g~i~v~-g~~ 78 (525)
T 1tf7_A 19 AKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD-EPGVFVT-FEE 78 (525)
T ss_dssp CEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC-CCEEEEE-SSS
T ss_pred ccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC-CCEEEEE-EeC
Confidence 5678899999865 4 68899999999999999999999863 4433312 2345543 443
No 57
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.73 E-value=0.0061 Score=52.61 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=22.5
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+.+|+.++|.|++|+|||||+..+..
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHh
Confidence 56899999999999999999987664
No 58
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.72 E-value=0.037 Score=52.08 Aligned_cols=52 Identities=23% Similarity=0.195 Sum_probs=32.8
Q ss_pred cCc--eeEeecCCCCcHHHHHHHHHHHHHhhc-CCEEEEEEeeccchhHHHHHHHHH
Q 018957 225 RGG--KIGLFGGAGVGKTVLIMELINNVAKAH-GGFSVFAGVGERTREGNDLYREMI 278 (348)
Q Consensus 225 kGQ--r~gIfg~~GvGKT~L~~~ii~n~a~~~-~~~~V~~~IGER~rEv~~~~~e~~ 278 (348)
.+. -+.|.|++|+|||+|+..+.... ... ....+++-+.. .....++++++.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~-~~~~~~~~~~i~~~~-~~~~~~~~~~l~ 95 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELY-KDKTTARFVYINGFI-YRNFTAIIGEIA 95 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHH-TTSCCCEEEEEETTT-CCSHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH-hhhcCeeEEEEeCcc-CCCHHHHHHHHH
Confidence 445 79999999999999998877654 222 23345555433 333445555543
No 59
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.69 E-value=0.0056 Score=54.74 Aligned_cols=30 Identities=30% Similarity=0.401 Sum_probs=22.6
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
=+.+.+|+.++|+|++|+|||||+..+...
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 356789999999999999999999877653
No 60
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.66 E-value=0.0065 Score=53.46 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=22.0
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
++.+|+.++|+|++|+|||||+..+..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999999987654
No 61
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.65 E-value=0.018 Score=58.06 Aligned_cols=42 Identities=29% Similarity=0.436 Sum_probs=29.7
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHH---HhhcCCEEEEEEeecc
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNV---AKAHGGFSVFAGVGER 266 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~---a~~~~~~~V~~~IGER 266 (348)
..+-++|.|++|+|||+|+.++.++. .....+.++++-+++.
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 45678999999999999999887532 2222345666666665
No 62
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.61 E-value=0.0074 Score=52.71 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=22.5
Q ss_pred eecceeeeeceeecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 210 LVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 210 l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
|.++--..+.+.+..+|..++|.|++|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 13 LGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp ---------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCchhhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4455556677777889999999999999999999877643
No 63
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.52 E-value=0.01 Score=57.68 Aligned_cols=43 Identities=26% Similarity=0.194 Sum_probs=36.1
Q ss_pred cceeecceeeeecee-ecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 207 QQILVTGIKVVDLLA-PYQRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 207 ~e~l~TGIkvID~l~-PigkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
...+.||+.-+|-++ -+-+|.-+.|.|++|+|||+|+.+++.+
T Consensus 103 ~~~i~TGi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 103 TGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp STTCCSBCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred hhccccCcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 345679999999887 4447888899999999999999998875
No 64
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.48 E-value=0.013 Score=58.25 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=26.3
Q ss_pred CceeEeecCCCCcHHHHHHHHHHHHHhhcCCE-EEEEE
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAG 262 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~-~V~~~ 262 (348)
+.-+.|.|++|+|||+|+..+.+.....+.+. ++|+-
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 56789999999999999987776554333343 34443
No 65
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.34 E-value=0.016 Score=54.20 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=26.7
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEe
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV 263 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~I 263 (348)
.+.-+.|.|++|+|||+|+..+++..... +.-++|+-+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~~~~~i~~ 73 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GYRVIYSSA 73 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT-TCCEEEEEH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC-CCEEEEEEH
Confidence 45679999999999999998877654322 233455543
No 66
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.32 E-value=0.1 Score=53.29 Aligned_cols=31 Identities=29% Similarity=0.222 Sum_probs=26.9
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
+.+.+|+.++|+|++|+|||||+..|+....
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 4688999999999999999999988776543
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.31 E-value=0.01 Score=50.91 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=23.0
Q ss_pred eecccCceeEeecCCCCcHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIME 245 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ 245 (348)
+.+.+|+-++|+|++|+|||||+..
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHH
Confidence 5788999999999999999999983
No 68
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.27 E-value=0.012 Score=53.57 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=25.1
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 44789999999999999999999987443
No 69
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.18 E-value=0.013 Score=53.36 Aligned_cols=29 Identities=24% Similarity=0.511 Sum_probs=25.1
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 24 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 24 ITFSIPEGALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 34688999999999999999999997543
No 70
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.18 E-value=0.011 Score=52.11 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=23.9
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
..+|+.++|.|++|+|||||+..+....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998766543
No 71
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.14 E-value=0.012 Score=50.65 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=25.8
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
+.+.+|+.++|.|+.|+|||||+..++...
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 467899999999999999999998776543
No 72
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.13 E-value=0.014 Score=50.30 Aligned_cols=27 Identities=30% Similarity=0.399 Sum_probs=22.4
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.+.+|..++|.|++|+|||||+..+..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987654
No 73
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.11 E-value=0.013 Score=52.96 Aligned_cols=28 Identities=25% Similarity=0.546 Sum_probs=24.6
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~i 246 (348)
.=+.+.+|+.++|+|++|+|||||+.-+
T Consensus 23 vsl~i~~Ge~~~iiG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 23 ISLSVKKGEFVSIIGASGSGKSTLLYIL 50 (224)
T ss_dssp EEEEEETTCEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 4468899999999999999999998744
No 74
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.08 E-value=0.014 Score=53.59 Aligned_cols=29 Identities=28% Similarity=0.491 Sum_probs=25.1
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 28 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 44688999999999999999999997543
No 75
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.04 E-value=0.016 Score=53.27 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=25.3
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 22 VNLVVPKGEVHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999999999999997554
No 76
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.04 E-value=0.014 Score=54.18 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=25.1
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 25 VSLQARAGDVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 44679999999999999999999997543
No 77
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.03 E-value=0.016 Score=53.81 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=25.2
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 39 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 39 LSLDVHPGEVHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999999999999997554
No 78
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.03 E-value=0.015 Score=50.05 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.3
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+|..++|.|++|+|||||+..+...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6889999999999999999887654
No 79
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.01 E-value=0.016 Score=50.51 Aligned_cols=29 Identities=28% Similarity=0.157 Sum_probs=22.8
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+.+.+|..+.|.|++|+||||++..+...
T Consensus 20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 20 FQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred EecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999887754
No 80
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.96 E-value=0.014 Score=54.35 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=26.9
Q ss_pred eeee-ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 215 KVVD-LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 215 kvID-~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.++| .=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 25 ~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~ 58 (266)
T 4g1u_C 25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLT 58 (266)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHT
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3444 34789999999999999999999997553
No 81
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.94 E-value=0.014 Score=51.34 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=20.7
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
-+|+.++|+|++|+|||||+..+...
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999877653
No 82
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.94 E-value=0.015 Score=52.53 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=22.8
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
=+.+.+|..++|.|++|+|||||+..+..
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred eccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999999986654
No 83
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.93 E-value=0.017 Score=58.44 Aligned_cols=59 Identities=19% Similarity=0.322 Sum_probs=43.1
Q ss_pred cceeecceeeeecee--ecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeecc
Q 018957 207 QQILVTGIKVVDLLA--PYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266 (348)
Q Consensus 207 ~e~l~TGIkvID~l~--PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER 266 (348)
.+.+.||+.-+|-++ .+.+|..++|.|++|+|||||+..++..... .+..++|..-.+.
T Consensus 260 ~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-~G~~vi~~~~ee~ 320 (525)
T 1tf7_A 260 NVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA-NKERAILFAYEES 320 (525)
T ss_dssp CCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT-TTCCEEEEESSSC
T ss_pred cceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh-CCCCEEEEEEeCC
Confidence 356778887777553 7899999999999999999999988866543 3344455443333
No 84
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.90 E-value=0.015 Score=52.66 Aligned_cols=29 Identities=31% Similarity=0.563 Sum_probs=25.0
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|.|++|+|||||+.-+.
T Consensus 27 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 27 INFKIERGQLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 44678899999999999999999997543
No 85
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.90 E-value=0.011 Score=56.46 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=27.5
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
|.-+.+.+|++++|+|++|+|||||+.-+..-
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 34578999999999999999999999876654
No 86
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.90 E-value=0.017 Score=52.64 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=25.1
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp EEEEECTTEEEEEECCTTSSHHHHHHHHT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34678999999999999999999997554
No 87
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.89 E-value=0.017 Score=54.24 Aligned_cols=30 Identities=30% Similarity=0.566 Sum_probs=25.5
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 26 ~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 26 GINMNIKRGEVTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp EEEEEEETTSEEEEECCTTSSHHHHHHHHT
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 344689999999999999999999997543
No 88
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.89 E-value=0.022 Score=54.71 Aligned_cols=28 Identities=7% Similarity=0.115 Sum_probs=24.6
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
-+++..+.|.|++|||||+++..++...
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4688899999999999999999888765
No 89
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.89 E-value=0.016 Score=54.02 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=25.1
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 43 vsl~i~~Gei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 43 INVHIREGEVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred eEEEEcCCCEEEEEcCCCCcHHHHHHHHH
Confidence 44678999999999999999999997543
No 90
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.87 E-value=0.01 Score=52.90 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=19.9
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+.+.+|+.++|.|++|+|||||+..+.
T Consensus 22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 22 MLKSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEECCCEEEEECSCC----CHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999998776
No 91
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.87 E-value=0.016 Score=52.94 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=24.9
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 25 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 25 IDLKVPRGQIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34678999999999999999999987543
No 92
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.85 E-value=0.012 Score=50.81 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=27.5
Q ss_pred eeeeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 215 KVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 215 kvID~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.+++- +++.+|.+++|+|++|+|||||+..+.
T Consensus 16 ~~l~~-~~~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 16 PDIRH-LPSDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SSGGG-SSCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCHhH-CCCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 45555 899999999999999999999987665
No 93
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.85 E-value=0.016 Score=53.96 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=25.1
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 38 vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 34688999999999999999999997543
No 94
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.85 E-value=0.016 Score=53.62 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=25.1
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 34 vsl~i~~Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 34 ISFEIEEGEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHT
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 34688999999999999999999997543
No 95
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.85 E-value=0.015 Score=52.57 Aligned_cols=29 Identities=24% Similarity=0.556 Sum_probs=24.8
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+-+|+.++|+|++|+|||||+.-+.
T Consensus 28 vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 28 ITMTIEKGNVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp EEEEEETTCCEEEECCTTSSHHHHHHHHT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 33678899999999999999999987543
No 96
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.83 E-value=0.016 Score=54.42 Aligned_cols=30 Identities=33% Similarity=0.400 Sum_probs=25.5
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 39 ~isl~i~~Ge~~~liG~NGsGKSTLlk~l~ 68 (279)
T 2ihy_A 39 KISWQIAKGDKWILYGLNGAGKTTLLNILN 68 (279)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 344678999999999999999999987543
No 97
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.82 E-value=0.015 Score=53.62 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=25.0
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 26 VSISVNKGDVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp ECCEEETTCEEEEECSTTSSHHHHHHHHT
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 34678999999999999999999997543
No 98
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.82 E-value=0.019 Score=53.11 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=25.1
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 39 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 39 INFFIPSGTTCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 34678999999999999999999997554
No 99
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.76 E-value=0.28 Score=47.01 Aligned_cols=40 Identities=33% Similarity=0.295 Sum_probs=29.1
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEe
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGV 263 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~I 263 (348)
-.+|+.++|.|++|+||||++..++..... ++.-+.+.+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~-~~g~V~l~g~ 165 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN-HGFSVVIAAS 165 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCEEEEEee
Confidence 368999999999999999999988765533 3333334433
No 100
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.76 E-value=0.022 Score=61.58 Aligned_cols=40 Identities=28% Similarity=0.534 Sum_probs=29.2
Q ss_pred ceeEeecCCCCcHHHHHHHHHHHHH---hhcCCEEEEEEeecc
Q 018957 227 GKIGLFGGAGVGKTVLIMELINNVA---KAHGGFSVFAGVGER 266 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n~a---~~~~~~~V~~~IGER 266 (348)
..++|.|..|+|||+|+.+++++.. ....+.++++-+++.
T Consensus 148 ~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 148 GWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp EEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 4578999999999999998876531 113456667777764
No 101
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.75 E-value=0.017 Score=53.24 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=25.5
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 18 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 18 PLSGEVRAGEILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 344678999999999999999999997543
No 102
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.74 E-value=0.019 Score=56.15 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=27.6
Q ss_pred eee-eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 215 KVV-DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 215 kvI-D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.++ |.=+.+.+|+.++|+|++|+|||||+..++
T Consensus 18 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHh
Confidence 444 455789999999999999999999997554
No 103
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.70 E-value=0.019 Score=53.27 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=25.1
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 26 VSLVINEGECLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 34689999999999999999999997543
No 104
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.70 E-value=0.28 Score=46.72 Aligned_cols=44 Identities=25% Similarity=0.215 Sum_probs=32.2
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeec
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGE 265 (348)
+...+|+.++|.|+.|+||||++..++...+.. +.-+.++...-
T Consensus 100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~-g~kVllid~D~ 143 (320)
T 1zu4_A 100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL-GYKVLIAAADT 143 (320)
T ss_dssp CCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 357889999999999999999999888765543 33344444443
No 105
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.70 E-value=0.018 Score=53.17 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=25.0
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 24 LNFDLNKGDILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp EEEEEETTCEEEEECCSSSSHHHHHHHHT
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 33678999999999999999999997543
No 106
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.65 E-value=0.024 Score=52.55 Aligned_cols=34 Identities=29% Similarity=0.364 Sum_probs=27.5
Q ss_pred eeeceeecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 216 vID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
+++-+. +.+|+.++|.|++|+|||||+..++.-.
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 344444 8899999999999999999998776543
No 107
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.60 E-value=0.25 Score=41.72 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.7
Q ss_pred ceeEeecCCCCcHHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
..+.|.|++|+|||+|+..+++..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 359999999999999999887654
No 108
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.58 E-value=0.019 Score=49.96 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=22.0
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
..+|..++|.|++|+|||||+..+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999876543
No 109
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.56 E-value=0.024 Score=55.93 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=27.2
Q ss_pred eee-eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 215 KVV-DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 215 kvI-D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.++ |.=+.+.+|+.++|+|++|+|||||+..++
T Consensus 17 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHH
Confidence 344 444789999999999999999999997554
No 110
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.53 E-value=0.024 Score=55.32 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=25.9
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+..++
T Consensus 33 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 33 GVSFQIREGEMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHh
Confidence 455688999999999999999999997554
No 111
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.53 E-value=0.025 Score=55.24 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=26.1
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+..++
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHH
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHH
Confidence 455789999999999999999999997554
No 112
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.50 E-value=0.13 Score=57.31 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=35.2
Q ss_pred CceeEeecCCCCcHHHHHHHHHHH--HHhhcCCEEEEEEeeccchhHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINN--VAKAHGGFSVFAGVGERTREGNDLYREMIE 279 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n--~a~~~~~~~V~~~IGER~rEv~~~~~e~~~ 279 (348)
..-++|.|..|+|||||+.++.+. ......+-++++-+++... ...++..+.+
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d-~~~IL~~Ll~ 204 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS-PETVLEMLQK 204 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSS-HHHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCC-HHHHHHHHHH
Confidence 457899999999999999988753 2222223367777777654 3455555544
No 113
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.50 E-value=0.025 Score=55.26 Aligned_cols=30 Identities=23% Similarity=0.486 Sum_probs=25.9
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+..++
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHh
Confidence 445789999999999999999999997554
No 114
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.49 E-value=0.025 Score=55.45 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=25.9
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+..++
T Consensus 29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHH
Confidence 455789999999999999999999997554
No 115
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.46 E-value=0.27 Score=46.68 Aligned_cols=41 Identities=24% Similarity=0.170 Sum_probs=30.3
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEee
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG 264 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IG 264 (348)
..+|..++|.|++|+||||++..++...+.. +.-+.++...
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~-g~kV~lv~~D 141 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE-GKSVVLAAAD 141 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEEC
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhc-CCEEEEEccc
Confidence 5678899999999999999999888765432 3334444443
No 116
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.44 E-value=0.08 Score=52.83 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=19.2
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
.-+.|.|++|||||+|+..+.+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999866543
No 117
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.43 E-value=0.044 Score=47.65 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=23.6
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
.+|+.+.|.|++|+|||||+..+....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999998877654
No 118
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.41 E-value=0.026 Score=55.28 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=26.1
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+..++
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHHHHH
Confidence 455789999999999999999999997554
No 119
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.40 E-value=0.04 Score=52.80 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=26.0
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
+.+.+|+.++|.|++|+|||||+..++...
T Consensus 50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 50 PQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp GGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 568899999999999999999998776543
No 120
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.37 E-value=0.047 Score=51.73 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=26.5
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
+.+.+|+.++|+|++|+||||++..++....
T Consensus 95 ~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 95 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CCSSSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999988776543
No 121
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.34 E-value=0.022 Score=55.36 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=25.7
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+..++
T Consensus 18 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 18 NLSLKVESGEYFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp EEEEEECTTCEEEEECCCTHHHHHHHHHHH
T ss_pred eeEEEEcCCCEEEEECCCCccHHHHHHHHH
Confidence 344689999999999999999999997543
No 122
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.29 E-value=0.033 Score=47.94 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=24.2
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+..+|..++|.|++|+||||++..+...
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999877654
No 123
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.27 E-value=0.027 Score=49.07 Aligned_cols=29 Identities=28% Similarity=0.272 Sum_probs=24.7
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
...+.+|..++|.|++|+||||++..+..
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34577899999999999999999987654
No 124
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.25 E-value=0.028 Score=55.41 Aligned_cols=29 Identities=28% Similarity=0.629 Sum_probs=25.4
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|.|++|+|||||+..++
T Consensus 40 vsl~i~~Ge~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 40 ISFSISPGQRVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHH
T ss_pred eeEEEcCCCEEEEECCCCChHHHHHHHHh
Confidence 34689999999999999999999997554
No 125
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.24 E-value=0.024 Score=50.02 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=21.9
Q ss_pred CceeEeecCCCCcHHHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
|++++|+|++|+|||||+..++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 7899999999999999998776544
No 126
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.22 E-value=0.025 Score=53.35 Aligned_cols=29 Identities=31% Similarity=0.563 Sum_probs=25.0
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|+.++|+|++|+|||||+.-+.
T Consensus 57 isl~i~~Ge~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 57 INFKIERGQLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHT
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 34678999999999999999999987543
No 127
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.22 E-value=0.023 Score=54.20 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=25.2
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|++++|+|++|+|||||+.-+.
T Consensus 73 isl~i~~Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 73 VSFTVMPGQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp EEEEECTTCEEEEESSSCHHHHHHHHHHT
T ss_pred eeEEEcCCCEEEEECCCCchHHHHHHHHH
Confidence 34689999999999999999999996543
No 128
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.20 E-value=0.033 Score=49.91 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=24.0
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
.|..+|.-+.|.|++|+|||||+..++..
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 35568999999999999999999888754
No 129
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.19 E-value=0.061 Score=46.72 Aligned_cols=40 Identities=23% Similarity=0.231 Sum_probs=28.5
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEee
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG 264 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IG 264 (348)
.+++.+.|.|++|+|||+|+..++..... ++..++|+-+.
T Consensus 50 ~~~~~~ll~G~~G~GKT~la~~l~~~~~~-~~~~~~~~~~~ 89 (242)
T 3bos_A 50 DGVQAIYLWGPVKSGRTHLIHAACARANE-LERRSFYIPLG 89 (242)
T ss_dssp CSCSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEGG
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEHH
Confidence 46889999999999999999988765432 22234444443
No 130
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.09 E-value=0.034 Score=54.50 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=27.2
Q ss_pred eeee-eceeecccCceeEeecCCCCcHHHHHHHH
Q 018957 214 IKVV-DLLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (348)
Q Consensus 214 IkvI-D~l~PigkGQr~gIfg~~GvGKT~L~~~i 246 (348)
+.++ |.=+.+.+|+..+|+|++|+|||||+.-+
T Consensus 41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i 74 (366)
T 3tui_C 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV 74 (366)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHH
Confidence 3455 44578999999999999999999998644
No 131
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.03 E-value=0.022 Score=55.36 Aligned_cols=30 Identities=23% Similarity=0.542 Sum_probs=25.7
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|+.++|+|++|+|||||+..++
T Consensus 23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 23 NVNINIENGERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHHh
Confidence 345688999999999999999999997544
No 132
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.01 E-value=0.032 Score=51.90 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=23.3
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
=+.+. |+.++|+|++|+|||||+.-+.
T Consensus 25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~ 51 (263)
T 2pjz_A 25 NLEVN-GEKVIILGPNGSGKTTLLRAIS 51 (263)
T ss_dssp EEEEC-SSEEEEECCTTSSHHHHHHHHT
T ss_pred eEEEC-CEEEEEECCCCCCHHHHHHHHh
Confidence 35677 9999999999999999997554
No 133
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.00 E-value=0.066 Score=46.74 Aligned_cols=28 Identities=25% Similarity=0.200 Sum_probs=23.9
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+..+|..++|.|++|+|||||+..+...
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578899999999999999999877654
No 134
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.93 E-value=0.038 Score=46.58 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.9
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
-+|..++|.|++|+||||++..+..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999987754
No 135
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.93 E-value=0.059 Score=50.77 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=21.6
Q ss_pred CceeEeecCCCCcHHHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
|.-+.|.|++|+|||+|+..+++..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999998877654
No 136
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.89 E-value=0.058 Score=50.76 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=23.2
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+..+|..++|.|++|+|||||+..+..
T Consensus 76 ~~~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 76 GQRIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999999976654
No 137
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.89 E-value=0.5 Score=44.48 Aligned_cols=40 Identities=28% Similarity=0.141 Sum_probs=29.0
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEee
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVG 264 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IG 264 (348)
.+|..+++.|..|+||||++..++...+.. +.-+.++...
T Consensus 96 ~~~~vi~i~G~~G~GKTT~~~~la~~~~~~-g~~v~l~~~D 135 (297)
T 1j8m_F 96 KIPYVIMLVGVQGTGKTTTAGKLAYFYKKK-GFKVGLVGAD 135 (297)
T ss_dssp SSSEEEEEECSSCSSTTHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 358999999999999999999888766543 3333344443
No 138
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.88 E-value=0.038 Score=48.66 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.7
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
.+|.-++|.|++|+|||||+..++..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 47889999999999999999887653
No 139
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.87 E-value=0.035 Score=50.07 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=22.1
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+-+|+-++|+|++|+|||||+..+...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999876543
No 140
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.85 E-value=0.037 Score=46.36 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=20.7
Q ss_pred cCceeEeecCCCCcHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.|..++|.|++|+|||||+..+..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999987654
No 141
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.84 E-value=0.033 Score=48.02 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=20.1
Q ss_pred CceeEeecCCCCcHHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
|.-++|.|++|+|||||+..+...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 456899999999999999877643
No 142
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.83 E-value=0.07 Score=50.60 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=24.1
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
++|+.++|+|++|+|||||+..++....
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4799999999999999999988775543
No 143
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.83 E-value=0.027 Score=50.48 Aligned_cols=26 Identities=31% Similarity=0.249 Sum_probs=22.9
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+.+|+.++|+|++|+|||||+.-+.-
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhc
Confidence 47999999999999999999976653
No 144
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.74 E-value=0.014 Score=55.76 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=27.9
Q ss_pred eeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 217 ID~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+|.|+++-+|+.++|+|++|+|||||+..+.
T Consensus 164 ~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 164 LADIIPHFQDKTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp CTTTGGGGTTSEEEEEESHHHHHHHHHHHHC
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHhc
Confidence 5778899999999999999999999987664
No 145
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.69 E-value=0.038 Score=46.64 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=23.2
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
+|+-++|+|++|+|||+|+..+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998776644
No 146
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.68 E-value=0.74 Score=43.08 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=29.9
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeecc
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER 266 (348)
+|+.++|.|..|+||||++..++...+.. +.-+.++...-+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~-~~~v~l~~~d~~ 137 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK-GRRPLLVAADTQ 137 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT-TCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEecCCcc
Confidence 89999999999999999999888765543 333344444433
No 147
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.67 E-value=0.33 Score=45.09 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=21.5
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
..+.-++|.|++|+|||+|+..++..
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 45667999999999999999877653
No 148
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.67 E-value=0.045 Score=47.79 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=23.9
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+.+|.-+.|.|++|+|||||+..+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 578899999999999999999887654
No 149
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.62 E-value=0.077 Score=51.72 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=26.2
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
+.+.+|+.++|+|++|+||||++..++...
T Consensus 152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 357899999999999999999998877654
No 150
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.59 E-value=0.04 Score=52.41 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=23.8
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.+.+|..++|.|++|+|||||+..+..
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCchHHHHHHHHHh
Confidence 378999999999999999999976654
No 151
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.52 E-value=0.34 Score=48.56 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.3
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNVAK 252 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~ 252 (348)
++..+.+.|.+|+||||++..++...++
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 5778999999999999999999876654
No 152
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.51 E-value=0.043 Score=47.77 Aligned_cols=22 Identities=41% Similarity=0.693 Sum_probs=19.1
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
+++|.|++|+|||||+..++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999876643
No 153
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.48 E-value=0.047 Score=46.31 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.6
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.+|..+.|.|++|+||||++..+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999987764
No 154
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.42 E-value=0.042 Score=49.37 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=20.8
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.+.+| ++|+|++|+|||+|+..+..
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHH
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHH
Confidence 34566 99999999999999987664
No 155
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.38 E-value=0.061 Score=44.47 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=22.8
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
..+.-+.|.|++|+|||+|+..+++..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 445779999999999999999887654
No 156
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.35 E-value=0.057 Score=47.26 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.1
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
++.+++|.|++|+||||++..+...
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999877653
No 157
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.33 E-value=0.089 Score=45.89 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=23.9
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNVAK 252 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~ 252 (348)
+|+-..|.|++|+||||++.+++.+...
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5777889999999999999888887643
No 158
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.32 E-value=0.046 Score=46.73 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=20.1
Q ss_pred CceeEeecCCCCcHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|+.++|+|++|+|||||+..+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 56789999999999999987753
No 159
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.32 E-value=0.58 Score=46.71 Aligned_cols=29 Identities=31% Similarity=0.140 Sum_probs=24.8
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~ 252 (348)
.++..+.+.|++|+||||++..++...++
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36788999999999999999998876654
No 160
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.28 E-value=0.06 Score=49.22 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=24.4
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+ +.++|+|++|+|||||+.-+.
T Consensus 17 ~isl~i~~-e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 17 NVDFEMGR-DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp EEEEEECS-SEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEECC-EEEEEECCCCCCHHHHHHHHh
Confidence 44467889 999999999999999997544
No 161
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.27 E-value=0.03 Score=52.77 Aligned_cols=31 Identities=35% Similarity=0.483 Sum_probs=28.6
Q ss_pred eeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 217 ID~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
||-|+.+-+|+..+|+|++|+|||||+..+.
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 6788899999999999999999999998776
No 162
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.26 E-value=0.45 Score=45.46 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.1
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
-++|+|++|+|||+|+..+++.
T Consensus 86 ~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999877654
No 163
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.25 E-value=0.045 Score=50.74 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=20.8
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.+.+| ++|+|++|+|||+|+..++.
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHH
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHH
Confidence 35566 99999999999999986654
No 164
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.24 E-value=0.049 Score=45.95 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.0
Q ss_pred cCceeEeecCCCCcHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+|.|++|+|.+|+|||+|+..+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 678999999999999999987764
No 165
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.22 E-value=0.042 Score=52.77 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=23.7
Q ss_pred eccc--CceeEeecCCCCcHHHHHHHHHHH
Q 018957 222 PYQR--GGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 222 Pigk--GQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
.+.+ |++.+|+|++|+|||||+..+...
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 3566 999999999999999999876643
No 166
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.16 E-value=0.054 Score=48.65 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=21.2
Q ss_pred cCceeEeecCCCCcHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
++..++|+|++|+|||||+..+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987763
No 167
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.05 E-value=0.12 Score=44.46 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=21.4
Q ss_pred ceeEeecCCCCcHHHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
+-+.|.|++|+|||+|+..+.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6799999999999999988776553
No 168
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.81 E-value=0.072 Score=54.39 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=26.2
Q ss_pred eeeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 216 vID~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+++.+..+.+|+.++|+|++|+|||||+.-+.
T Consensus 37 ~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~ 68 (538)
T 1yqt_A 37 VLYRLPVVKEGMVVGIVGPNGTGKSTAVKILA 68 (538)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHH
T ss_pred cccCcCcCCCCCEEEEECCCCCCHHHHHHHHh
Confidence 44444468999999999999999999987543
No 169
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.80 E-value=0.14 Score=44.10 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=23.9
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
..+|-.+.|.|++|+||||++..+....
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999999887643
No 170
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.74 E-value=0.059 Score=49.30 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=21.2
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
.+.+| ++|+|++|+|||+|+..+...
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHH
Confidence 34566 999999999999999876643
No 171
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.72 E-value=0.08 Score=44.65 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=21.7
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
+|..+.|.|++|+||||++..+....
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999887643
No 172
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.69 E-value=0.24 Score=41.97 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=19.5
Q ss_pred eeEeecCCCCcHHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
.++|.|++|+||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999998877643
No 173
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.65 E-value=0.86 Score=40.69 Aligned_cols=55 Identities=22% Similarity=0.167 Sum_probs=35.0
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeecc-chhHHHHHHHHHHcC
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER-TREGNDLYREMIESG 281 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER-~rEv~~~~~e~~~~~ 281 (348)
.+|--+.|-|+.|+||||++..+...... .++.|+ .+-|. +.+.-+.++++...+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~--~~~~v~-~~~~p~~~~~g~~i~~~l~~~ 59 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE--RGIEVQ-LTREPGGTPLAERIRELLLAP 59 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEE-EEESSCSSHHHHHHHHHHHSC
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH--cCCCcc-cccCCCCCHHHHHHHHHHhcC
Confidence 36788999999999999999888765432 234443 23333 334445566665543
No 174
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.65 E-value=0.16 Score=46.03 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=20.7
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
....++|.|++|+|||+|+..+++.
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3456899999999999999877654
No 175
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.63 E-value=0.071 Score=48.53 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.8
Q ss_pred ccCceeEeecCCCCcHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.+|..++|.|++|+|||||+..+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999998776
No 176
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.63 E-value=0.79 Score=41.35 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=20.9
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
.+.-++|.|++|+|||+|+..+++.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4556999999999999999877654
No 177
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.61 E-value=0.22 Score=46.85 Aligned_cols=28 Identities=32% Similarity=0.413 Sum_probs=24.7
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
.+|+.++|.|+.|+||||++..++...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998886654
No 178
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.60 E-value=0.18 Score=50.44 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=18.4
Q ss_pred eEeecCCCCcHHHHHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n 249 (348)
++++||+|||||.|+..++..
T Consensus 218 vLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 218 ALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred eEEECcCCCCHHHHHHHHHHH
Confidence 899999999999999877654
No 179
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.60 E-value=0.19 Score=50.10 Aligned_cols=21 Identities=38% Similarity=0.714 Sum_probs=18.6
Q ss_pred eEeecCCCCcHHHHHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n 249 (348)
++++||+|||||.|+..+++.
T Consensus 209 iLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999877654
No 180
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.57 E-value=0.081 Score=44.82 Aligned_cols=26 Identities=42% Similarity=0.356 Sum_probs=22.5
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
.++..+.|.|++|+||||++..+...
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 46788999999999999999887654
No 181
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.56 E-value=0.072 Score=44.21 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=22.5
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
....-+.|.|++|+|||+|+..+++..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 346678999999999999999887654
No 182
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.55 E-value=0.12 Score=50.10 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=25.0
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
+.+|+.++|.|++|+|||||+..++...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 6789999999999999999998887654
No 183
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.55 E-value=0.062 Score=53.98 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=24.8
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|++++|+|++|+|||||+.-++.
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHH
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 335567999999999999999999975543
No 184
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.48 E-value=0.084 Score=54.93 Aligned_cols=32 Identities=28% Similarity=0.464 Sum_probs=26.5
Q ss_pred eeeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 216 vID~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.++.+..+.+|+.++|+|++|+|||||+.-+.
T Consensus 93 ~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~ 124 (608)
T 3j16_B 93 KLHRLPTPRPGQVLGLVGTNGIGKSTALKILA 124 (608)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHH
T ss_pred eecCCCCCCCCCEEEEECCCCChHHHHHHHHh
Confidence 35555568899999999999999999987543
No 185
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.42 E-value=0.16 Score=43.68 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=23.5
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
..+|-.+.|.|++|+||||++..+....
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568889999999999999999887653
No 186
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.40 E-value=0.041 Score=51.68 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=27.6
Q ss_pred eeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 217 ID~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
||-++.+.+|+..+|+|++|+|||||+..+.
T Consensus 160 v~~lf~~l~geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 160 IEELKEYLKGKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp HHHHHHHHSSSEEEEECSTTSSHHHHHHHHS
T ss_pred HHHHHHHhcCCeEEEECCCCCcHHHHHHHhc
Confidence 6778888999999999999999999987654
No 187
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.35 E-value=0.2 Score=41.29 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=19.8
Q ss_pred cCceeEeecCCCCcHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.+.-+.|.|++|||||+++..+..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 456689999999999999976644
No 188
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.32 E-value=0.092 Score=43.49 Aligned_cols=22 Identities=23% Similarity=0.080 Sum_probs=19.1
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
.+.|.|++|+||||++..+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999887654
No 189
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.32 E-value=0.28 Score=48.68 Aligned_cols=58 Identities=21% Similarity=0.379 Sum_probs=36.0
Q ss_pred eEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEE---------eeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEe
Q 018957 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAG---------VGERTREGNDLYREMIESGVIKLGDKQADSKCALVYG 299 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~---------IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~ 299 (348)
++++||+|||||.|+..++... +..+|.. +||..+.+.++...-.+. ..+++|+-
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~-----~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~-----------aP~IIFiD 248 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHT-----DCKFIRVSGAELVQKYIGEGSRMVRELFVMAREH-----------APSIIFMD 248 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHH-----TCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHT-----------CSEEEEEE
T ss_pred eEEeCCCCCCHHHHHHHHHHhh-----CCCceEEEhHHhhccccchHHHHHHHHHHHHHHh-----------CCceEeee
Confidence 8999999999999998776542 3333332 355555555544443332 35777765
Q ss_pred cCC
Q 018957 300 QMN 302 (348)
Q Consensus 300 tsd 302 (348)
-.|
T Consensus 249 EiD 251 (405)
T 4b4t_J 249 EID 251 (405)
T ss_dssp SSS
T ss_pred cch
Confidence 544
No 190
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.31 E-value=0.19 Score=42.80 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=23.8
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
..+|..+.|.|.+|+||||++..+....
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4478889999999999999998887654
No 191
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.23 E-value=0.72 Score=43.10 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=19.4
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
.-++|+|++|+|||+|+..+++.
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999877653
No 192
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.22 E-value=1.3 Score=43.99 Aligned_cols=28 Identities=25% Similarity=0.105 Sum_probs=24.7
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNVAK 252 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~ 252 (348)
+|+.+.|.|..|+||||++..++...+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 7889999999999999999988876654
No 193
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.20 E-value=0.084 Score=45.27 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=19.5
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|++|+|++|+|||||+..++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999887653
No 194
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.16 E-value=0.17 Score=49.01 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=23.9
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
..+|+.++|.|++|+|||||+..++...
T Consensus 120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp HCSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 5678899999999999999998776544
No 195
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.07 E-value=0.14 Score=48.06 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=22.4
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
..+.-+.|.|++|+|||+|+..+++..
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999998887654
No 196
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.04 E-value=0.11 Score=42.34 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.8
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.++|++|+|||+|+..+..+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999888754
No 197
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.99 E-value=0.11 Score=44.12 Aligned_cols=25 Identities=40% Similarity=0.504 Sum_probs=22.1
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+|..++|.|++|+||||++..+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999877654
No 198
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.97 E-value=0.094 Score=53.71 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=25.8
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.+.+|++++|.|++|+|||||+.-+..
T Consensus 362 i~l~i~~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 446789999999999999999999976543
No 199
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.97 E-value=0.09 Score=45.05 Aligned_cols=22 Identities=41% Similarity=0.700 Sum_probs=19.5
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
+++|+|++|+|||||+..++.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999877654
No 200
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.97 E-value=0.11 Score=44.48 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=22.6
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
+|..+.|.|++|+||||++..+....
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999887644
No 201
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.96 E-value=0.1 Score=45.39 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=19.1
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
+++|.|++|+||||++..+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999877653
No 202
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.92 E-value=0.098 Score=43.47 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.4
Q ss_pred ceeEeecCCCCcHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~ 248 (348)
-+++|+|++|+|||+|+..+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3789999999999999988764
No 203
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.91 E-value=0.12 Score=43.84 Aligned_cols=24 Identities=33% Similarity=0.257 Sum_probs=20.8
Q ss_pred CceeEeecCCCCcHHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+..+.|.|++|+||||++..+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999988754
No 204
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.90 E-value=0.095 Score=53.50 Aligned_cols=26 Identities=35% Similarity=0.669 Sum_probs=23.0
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.+.+|+.++|+|+.|+|||||+.-+.
T Consensus 308 ~i~~Ge~~~i~G~NGsGKSTLlk~l~ 333 (538)
T 1yqt_A 308 EIKKGEVIGIVGPNGIGKTTFVKMLA 333 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999999997554
No 205
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.86 E-value=0.11 Score=45.37 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.6
Q ss_pred eeEeecCCCCcHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~ 248 (348)
+++|.|++|+||||++..+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999987754
No 206
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.86 E-value=0.096 Score=53.65 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=25.6
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|++++|.|++|+|||||+.-+.
T Consensus 361 ~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~ 390 (582)
T 3b60_A 361 NINLKIPAGKTVALVGRSGSGKSTIASLIT 390 (582)
T ss_dssp EEEEEECTTCEEEEEECTTSSHHHHHHHHT
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344678999999999999999999997554
No 207
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.84 E-value=0.31 Score=48.72 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=18.5
Q ss_pred eEeecCCCCcHHHHHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n 249 (348)
++++||+|||||.|+..+++.
T Consensus 218 vLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999877654
No 208
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.79 E-value=0.11 Score=42.00 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.6
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.++|++|+|||+|+..++.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999888753
No 209
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.77 E-value=0.11 Score=54.03 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=26.4
Q ss_pred eeeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 216 VVDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 216 vID~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+++.+..+.+|+.++|+|++|+|||||+.-+.
T Consensus 107 ~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~ 138 (607)
T 3bk7_A 107 VLYRLPIVKDGMVVGIVGPNGTGKTTAVKILA 138 (607)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHT
T ss_pred eeCCCCCCCCCCEEEEECCCCChHHHHHHHHh
Confidence 45555568999999999999999999997543
No 210
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.73 E-value=0.094 Score=42.40 Aligned_cols=22 Identities=32% Similarity=0.733 Sum_probs=19.7
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..+..+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999888754
No 211
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.73 E-value=0.085 Score=44.64 Aligned_cols=21 Identities=38% Similarity=0.725 Sum_probs=19.0
Q ss_pred eeEeecCCCCcHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~ 248 (348)
|+.|+|++|+|||+|+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999987764
No 212
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.64 E-value=0.13 Score=43.07 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=20.5
Q ss_pred CceeEeecCCCCcHHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
|.-+.|.|.+|+||||++..+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 567899999999999999887653
No 213
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.64 E-value=0.11 Score=42.67 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=19.0
Q ss_pred eeEeecCCCCcHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~ 248 (348)
|+.|+|++|+|||+|+..+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 789999999999999988764
No 214
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.64 E-value=0.38 Score=40.44 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=19.7
Q ss_pred eeEeecCCCCcHHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
.++|.|++|+||||++..+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999998887643
No 215
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.60 E-value=0.059 Score=52.64 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=25.7
Q ss_pred eeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 217 ID~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+|-|....+|+.++|+|++|+|||||+..+.
T Consensus 206 l~~L~~~~~G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 206 LKPLEEALTGRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HHHHHHHHTTSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCCccHHHHHHHHh
Confidence 3455566799999999999999999997665
No 216
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.59 E-value=0.99 Score=40.92 Aligned_cols=58 Identities=21% Similarity=0.214 Sum_probs=33.2
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHHhhc--CCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVAKAH--GGFSVFAGVGERTREGNDLYREMIESG 281 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~--~~~~V~~~IGER~rEv~~~~~e~~~~~ 281 (348)
.+|--+-|-|+.|+||||++..+.......+ .++.|+..--.++.+.-+.++++...+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~ 82 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQ 82 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcC
Confidence 5788899999999999999988876543220 133333222223445555566665543
No 217
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.56 E-value=0.13 Score=43.02 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=20.4
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
|-++|.|++|+||||++..+...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999877653
No 218
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.54 E-value=0.12 Score=41.93 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.7
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|.+|+|||+|+..+..+
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999888754
No 219
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.53 E-value=0.069 Score=51.57 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=24.9
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+.+.+|+.++|.|++|+|||||+.-++.
T Consensus 170 ~~i~~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 170 RAVQLERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp HHHHTTCCEEEEESSSSCHHHHHHHHHT
T ss_pred HHHhcCCEEEEECCCCCCHHHHHHHHHh
Confidence 4678999999999999999999987664
No 220
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.48 E-value=0.22 Score=44.76 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=25.1
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
.+.+|..+.|.|++|+||||++..+....
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999998887654
No 221
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.47 E-value=0.6 Score=46.81 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=18.6
Q ss_pred eEeecCCCCcHHHHHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n 249 (348)
++++||+|||||.|+..++..
T Consensus 219 vLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHHH
T ss_pred CceECCCCchHHHHHHHHHHH
Confidence 899999999999999877654
No 222
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.45 E-value=0.2 Score=47.72 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=26.2
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
+...+|..++|.|.+|+|||||+..++....
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3468999999999999999999988875543
No 223
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.45 E-value=0.14 Score=43.88 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.3
Q ss_pred cCceeEeecCCCCcHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+|-.+.|.|++|+||||++..+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 678899999999999999987764
No 224
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.45 E-value=0.14 Score=50.65 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=38.0
Q ss_pred cccccccCCCcchhhcccccceeecceeeeeceeecccC-ceeEeecCCCCcHHHHHHHHHHHHHhhcC-CEEEEEEeec
Q 018957 188 EHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRG-GKIGLFGGAGVGKTVLIMELINNVAKAHG-GFSVFAGVGE 265 (348)
Q Consensus 188 ~~~~pi~~~~p~~~~R~~~~e~l~TGIkvID~l~PigkG-Qr~gIfg~~GvGKT~L~~~ii~n~a~~~~-~~~V~~~IGE 265 (348)
..+.|+.-...++.++..+...+.. +-.+ +-+.|.|++|+|||+++..++........ .+.+.+..+.
T Consensus 16 ~~~~p~~~~~Ln~~Q~~av~~~~~~----------i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~ 85 (459)
T 3upu_A 16 PRGSHMTFDDLTEGQKNAFNIVMKA----------IKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHA 85 (459)
T ss_dssp -----CCSSCCCHHHHHHHHHHHHH----------HHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHH
T ss_pred cccCCCccccCCHHHHHHHHHHHHH----------HhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHH
Confidence 3455665555666666554433221 1112 28899999999999999988876543322 3445544443
No 225
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.44 E-value=0.14 Score=43.22 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=20.5
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
++-.+.|.|++|+||||++..+...
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3557899999999999999877653
No 226
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.43 E-value=0.098 Score=53.72 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=25.7
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+-+|++++|.|++|+|||||+.-+.
T Consensus 362 ~isl~i~~G~~~~ivG~sGsGKSTLl~~l~ 391 (595)
T 2yl4_A 362 DFSLSIPSGSVTALVGPSGSGKSTVLSLLL 391 (595)
T ss_dssp EEEEEECTTCEEEEECCTTSSSTHHHHHHT
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344688999999999999999999997554
No 227
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.43 E-value=0.5 Score=43.87 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=19.5
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
.-++|.|++|||||+|+..+.+.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999887553
No 228
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.40 E-value=0.24 Score=47.59 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.1
Q ss_pred CceeEeecCCCCcHHHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
+.+++|.|.+|+|||||+..++...
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 7789999999999999998887643
No 229
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.36 E-value=0.11 Score=42.70 Aligned_cols=19 Identities=32% Similarity=0.315 Sum_probs=17.2
Q ss_pred eeEeecCCCCcHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMEL 246 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~i 246 (348)
.+.|.|++|+||||++..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999877
No 230
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.36 E-value=0.1 Score=42.05 Aligned_cols=22 Identities=45% Similarity=0.813 Sum_probs=19.6
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.++|.+|+|||+|+..+..+
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999888754
No 231
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.35 E-value=0.11 Score=42.03 Aligned_cols=22 Identities=32% Similarity=0.709 Sum_probs=19.6
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.++|.+|+|||+|+..+..+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999888754
No 232
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.35 E-value=0.11 Score=53.28 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=24.9
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|++++|.|++|+|||||+.-+.
T Consensus 360 isl~i~~G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 360 INLSIEKGETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHTTTT
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHh
Confidence 34689999999999999999999986443
No 233
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.34 E-value=0.1 Score=42.57 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=19.7
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.++|++|+|||+|+..+..+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999888754
No 234
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.34 E-value=0.11 Score=42.23 Aligned_cols=22 Identities=36% Similarity=0.758 Sum_probs=19.7
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.++|++|+|||+|+..+..+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999888754
No 235
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.33 E-value=0.14 Score=43.55 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=22.8
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+.++-.+.|.|++|+||||++..+...
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 346778999999999999999887653
No 236
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.22 E-value=0.41 Score=43.94 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=38.9
Q ss_pred ceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCCHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEPPG 306 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep~~ 306 (348)
.-+.|.|++|+|||+|+..+.+.. . .. .+++-+.. .....++...|.+. ..+..++|.--.+.-+.
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~-~--~~-~~~~~~~~-~~~~~~l~~~l~~~---------~~~~~~l~lDEi~~l~~ 104 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL-G--VN-LRVTSGPA-IEKPGDLAAILANS---------LEEGDILFIDEIHRLSR 104 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH-T--CC-EEEECTTT-CCSHHHHHHHHTTT---------CCTTCEEEETTTTSCCH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh-C--CC-EEEEeccc-cCChHHHHHHHHHh---------ccCCCEEEEECCccccc
Confidence 568999999999999998776543 1 12 22332222 22233444433320 12457888877766554
Q ss_pred HH
Q 018957 307 AR 308 (348)
Q Consensus 307 ~r 308 (348)
..
T Consensus 105 ~~ 106 (324)
T 1hqc_A 105 QA 106 (324)
T ss_dssp HH
T ss_pred ch
Confidence 33
No 237
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.22 E-value=1.1 Score=42.88 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=20.1
Q ss_pred CceeEeecCCCCcHHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+.-++|.|++|+|||+|+..++..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999877543
No 238
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.22 E-value=0.13 Score=43.11 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.5
Q ss_pred ceeEeecCCCCcHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~ 248 (348)
-|++|+|++|+|||+|+..+..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3789999999999999988764
No 239
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.22 E-value=0.66 Score=43.70 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=19.7
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
.-++|+|++|+|||+|+..+++.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 45899999999999999877654
No 240
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.21 E-value=0.12 Score=44.54 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=18.5
Q ss_pred eeEeecCCCCcHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~ 248 (348)
+++|.|++|+||||++..+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999987654
No 241
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.13 E-value=0.15 Score=43.44 Aligned_cols=22 Identities=36% Similarity=0.721 Sum_probs=19.3
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
.+.|.|++|+||||++..+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999887654
No 242
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.13 E-value=0.11 Score=53.18 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=23.8
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+.+.+|+.++|+|++|+|||||+..+.
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~ 315 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFARILV 315 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHT
T ss_pred ceECCCCEEEEECCCCCCHHHHHHHHh
Confidence 467899999999999999999997554
No 243
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.13 E-value=0.14 Score=41.47 Aligned_cols=22 Identities=32% Similarity=0.732 Sum_probs=19.7
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|.+|+|||+|+..+..+
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999888753
No 244
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.11 E-value=0.14 Score=45.29 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=20.6
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
..++..+.|.|++|+||||++..+..
T Consensus 4 ~~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 4 SARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cccCcEEEEECCCCCCHHHHHHHHHH
Confidence 34667899999999999999987764
No 245
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.11 E-value=0.13 Score=53.49 Aligned_cols=26 Identities=35% Similarity=0.669 Sum_probs=23.0
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.+.+|+.++|+|++|+|||||+.-+.
T Consensus 378 ~v~~Gei~~i~G~NGsGKSTLlk~l~ 403 (607)
T 3bk7_A 378 EIRKGEVIGIVGPNGIGKTTFVKMLA 403 (607)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999999997554
No 246
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.10 E-value=0.15 Score=43.08 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=22.0
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
.++..+.|.|.+|+||||++..+...
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999887654
No 247
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.07 E-value=0.11 Score=53.40 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=25.0
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|++++|.|++|+|||||+.-+.
T Consensus 374 isl~i~~G~~~~ivG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 374 ITFHIKPGQKVALVGPTGSGKTTIVNLLM 402 (598)
T ss_dssp EEEECCTTCEEEEECCTTSSTTHHHHHHT
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 34679999999999999999999987543
No 248
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.07 E-value=0.14 Score=41.91 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=18.4
Q ss_pred eeEeecCCCCcHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii 247 (348)
|+.|+|++|+|||+|+..+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999998875
No 249
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.04 E-value=0.15 Score=43.02 Aligned_cols=29 Identities=21% Similarity=0.545 Sum_probs=23.0
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.-+.+.+| -.+|+|+.|+|||+|+.-+.
T Consensus 19 ~~~~~~~~g-~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 19 KVVIPFSKG-FTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp CEEEECCSS-EEEEEECTTSSHHHHHHHHH
T ss_pred cEEEecCCC-cEEEECCCCCCHHHHHHHHH
Confidence 344566677 88999999999999986553
No 250
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.01 E-value=0.28 Score=44.59 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=24.2
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~ 252 (348)
.+|+-+.|.|+.|+||||++.+++.+...
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 56888888899999999999999988754
No 251
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.97 E-value=0.15 Score=41.34 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=19.7
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..++.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999888753
No 252
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.96 E-value=1.2 Score=44.18 Aligned_cols=29 Identities=21% Similarity=0.168 Sum_probs=23.8
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHHHhh
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNVAKA 253 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~ 253 (348)
+...+.+.|..|+||||++..++...++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 34578889999999999999998776543
No 253
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.93 E-value=0.13 Score=52.88 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=25.0
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|++++|.|++|+|||||+.-+.
T Consensus 362 isl~i~~Ge~~~ivG~sGsGKSTll~~l~ 390 (587)
T 3qf4_A 362 VNFSVKPGSLVAVLGETGSGKSTLMNLIP 390 (587)
T ss_dssp EEEEECTTCEEEEECSSSSSHHHHHHTTT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 33689999999999999999999986443
No 254
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.91 E-value=1.2 Score=40.58 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=21.4
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
+...+.|.|++|+|||+++..+++..
T Consensus 45 ~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 45 SMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 33359999999999999998887654
No 255
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.91 E-value=0.21 Score=49.58 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=24.2
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
..+|+-++|.|+.|+|||||+..++...
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 3689999999999999999998777544
No 256
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.86 E-value=0.15 Score=47.92 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=23.3
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
-.++..++|.|++|+|||||+..+....
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998776543
No 257
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.82 E-value=0.13 Score=42.42 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=19.6
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..+..+
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999888753
No 258
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.82 E-value=0.13 Score=43.86 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=19.8
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..++.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999888764
No 259
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.82 E-value=0.086 Score=48.64 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=23.8
Q ss_pred eeccc---CceeEeecCCCCcHHHHHHHHHH
Q 018957 221 APYQR---GGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 221 ~Pigk---GQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+.+.+ |..+.|.|++|+||||++..+..
T Consensus 40 ~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 40 EEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp HTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred hhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34555 99999999999999999987765
No 260
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.78 E-value=0.15 Score=41.52 Aligned_cols=22 Identities=41% Similarity=0.816 Sum_probs=19.4
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..+..+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7899999999999999888743
No 261
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=90.78 E-value=0.12 Score=53.80 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.8
Q ss_pred ceeecccCceeEeecCCCCcHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLI 243 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~ 243 (348)
.=+.+.+|+.++|+|++|+|||||+
T Consensus 37 vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 37 IDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEEEETTSEEEEECSTTSSHHHHH
T ss_pred cEEEECCCCEEEEECCCCCCHHHHh
Confidence 3468999999999999999999996
No 262
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.77 E-value=0.17 Score=44.31 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.6
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+|-++.|.|++|+||||++..+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999887654
No 263
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.76 E-value=0.16 Score=41.83 Aligned_cols=22 Identities=41% Similarity=0.764 Sum_probs=19.7
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..+..+
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999888754
No 264
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.75 E-value=0.15 Score=41.43 Aligned_cols=23 Identities=30% Similarity=0.806 Sum_probs=20.0
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
=|+.++|.+|+|||+|+..+..+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37999999999999999887753
No 265
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.71 E-value=0.29 Score=46.09 Aligned_cols=27 Identities=22% Similarity=0.545 Sum_probs=23.0
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
.++-+.|.|++|+|||+|+..+++...
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 368899999999999999988776554
No 266
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.71 E-value=0.12 Score=44.05 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=20.2
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.+.-|+.|+|++|+|||+|+..+..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3455999999999999999988875
No 267
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.70 E-value=0.16 Score=42.98 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.0
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
.++.|.|++|+||||++..+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999887654
No 268
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.68 E-value=0.17 Score=41.22 Aligned_cols=22 Identities=32% Similarity=0.770 Sum_probs=19.8
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..++.+
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999888754
No 269
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.66 E-value=0.16 Score=43.28 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.0
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
.++..++|.|++|+||||++..+...
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999877654
No 270
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=90.65 E-value=0.41 Score=49.49 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=34.5
Q ss_pred eEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccchhHHHHHHHHHHcC
Q 018957 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESG 281 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~rEv~~~~~e~~~~~ 281 (348)
..|.||||||||+.+.++|.+..+... .| ..|.....-+.++.+.+.+.+
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~l~~~~~--~I-Lv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQAVKQGL--KV-LCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTC--CE-EEEESSHHHHHHHHHHHHHTT
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCC--eE-EEEcCchHHHHHHHHHHHhcC
Confidence 589999999999999999887655322 22 334555666666666665543
No 271
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.64 E-value=0.096 Score=46.75 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=22.6
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+..+|.-++|.|+.|+||||++..+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~ 41 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFE 41 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999987554
No 272
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.60 E-value=0.17 Score=43.11 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.2
Q ss_pred eeEeecCCCCcHHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
-+.|.|++|+|||+|+..+++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887654
No 273
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.58 E-value=0.14 Score=41.80 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=21.2
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+-=|+.|+|++|+|||+|+..+..+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4458999999999999999888653
No 274
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.56 E-value=0.17 Score=42.04 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.6
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|++|+|++|+|||+|+..+..+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999887753
No 275
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.55 E-value=0.14 Score=41.70 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=18.2
Q ss_pred eeEeecCCCCcHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii 247 (348)
|+.|+|++|+|||+|+..+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 78999999999999998775
No 276
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.54 E-value=0.14 Score=42.41 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.8
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.++|.+|+|||+|+..+..+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999888754
No 277
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.51 E-value=0.16 Score=42.32 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.5
Q ss_pred eeEeecCCCCcHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~ 248 (348)
.+.|.|++|+||||++..+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 478999999999999988765
No 278
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.51 E-value=0.16 Score=43.97 Aligned_cols=20 Identities=40% Similarity=0.635 Sum_probs=17.6
Q ss_pred eeEeecCCCCcHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii 247 (348)
.++|.|++|+||||++..+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La 23 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999998664
No 279
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=90.49 E-value=0.8 Score=43.14 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=19.7
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
..++|+|++|+|||||+.-++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 67899999999999999866653
No 280
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.48 E-value=0.11 Score=43.16 Aligned_cols=22 Identities=32% Similarity=0.699 Sum_probs=20.0
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.++|++|+|||+|+..++.+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999988764
No 281
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.46 E-value=1.8 Score=39.47 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=33.3
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEE-EEEEeec-cchhHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFS-VFAGVGE-RTREGNDLYREMIE 279 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~-V~~~IGE-R~rEv~~~~~e~~~ 279 (348)
+|.-+.|-|++|+||||++..+....... .+. +.. .-| .+.+.-+.++++..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~--~~~~~~~-~rep~~t~~g~~ir~~l~ 79 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQN--GIDHITR-TREPGGTLLAEKLRALVK 79 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHT--TCCCEEE-EESSCSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCCeeee-ecCCCCCHHHHHHHHHHh
Confidence 67889999999999999998887654322 333 222 223 34455555555543
No 282
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.46 E-value=0.16 Score=55.67 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=25.9
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|++++|+|++|+|||||+..+.
T Consensus 454 vsl~I~~Ge~v~LiGpNGsGKSTLLk~La 482 (986)
T 2iw3_A 454 TQLRLKRARRYGICGPNGCGKSTLMRAIA 482 (986)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 45689999999999999999999998665
No 283
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.45 E-value=0.2 Score=43.23 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=21.5
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
.++-.+.|.|++|+||||++..+...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999877653
No 284
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.44 E-value=0.2 Score=43.05 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=20.2
Q ss_pred cCceeEeecCCCCcHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+...++|.|++|+||||++..+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445689999999999999987764
No 285
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.43 E-value=0.16 Score=41.72 Aligned_cols=23 Identities=39% Similarity=0.775 Sum_probs=20.1
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
=|+.|+|.+|+|||+|+..+..+
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37899999999999999888754
No 286
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.40 E-value=0.14 Score=42.23 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.6
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..+..+
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7899999999999999888753
No 287
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.39 E-value=0.14 Score=43.07 Aligned_cols=24 Identities=38% Similarity=0.325 Sum_probs=16.5
Q ss_pred cCceeEeecCCCCcHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
++..+.|.|.+|+||||++..+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 677899999999999999987764
No 288
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.37 E-value=0.33 Score=44.59 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=25.4
Q ss_pred eeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeec
Q 018957 228 KIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGE 265 (348)
++.+.|.+|||||+++..++...++. +--++++-+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~-G~~V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ-GVRVMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC-CCCEEEEEeCC
Confidence 46778999999999999888776543 22233444444
No 289
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.35 E-value=0.19 Score=43.40 Aligned_cols=23 Identities=26% Similarity=0.422 Sum_probs=19.8
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
-.+.|.|++|+||||++..+...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999887654
No 290
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.34 E-value=0.18 Score=42.47 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.2
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
=+++|+|++|+|||+|+..+..+
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999887753
No 291
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.32 E-value=0.15 Score=42.37 Aligned_cols=22 Identities=45% Similarity=0.801 Sum_probs=19.7
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..++.+
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999888754
No 292
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.31 E-value=0.14 Score=50.27 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=24.9
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+.+.+|+.++|.|++|+|||||+..++.
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4688999999999999999999987764
No 293
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.31 E-value=0.15 Score=43.33 Aligned_cols=22 Identities=23% Similarity=0.671 Sum_probs=19.9
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..++.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 7899999999999999888764
No 294
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.30 E-value=0.18 Score=42.69 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=20.2
Q ss_pred eeEeecCCCCcHHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
|+.|+|.+|+|||+|+..+..+.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 78999999999999998887653
No 295
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.24 E-value=1 Score=43.05 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=24.1
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~ 252 (348)
.+.-+++|.|.+|+|||||+..++...+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35568999999999999999998876543
No 296
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.23 E-value=0.19 Score=41.21 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=19.7
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|.+|+|||+|+..+..+
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999888754
No 297
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.21 E-value=0.18 Score=42.49 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.5
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
++.|.|++|+||||++..+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999888654
No 298
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.20 E-value=0.18 Score=42.34 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=19.9
Q ss_pred eeEeecCCCCcHHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
.+.|.|++|+||||++..+....
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999887654
No 299
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.19 E-value=0.16 Score=42.37 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.4
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..++.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999887753
No 300
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.19 E-value=0.073 Score=50.90 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=24.3
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+.+.+|+.++|.|++|+|||||+.-++.
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHHGGG
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4567999999999999999999976654
No 301
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.18 E-value=0.16 Score=42.71 Aligned_cols=22 Identities=45% Similarity=0.813 Sum_probs=19.8
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.++|.+|+|||+|+..++.+
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999888754
No 302
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.15 E-value=0.16 Score=42.03 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=19.9
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
=|+.|+|++|+|||+|+..+..+
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999877653
No 303
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=90.13 E-value=0.19 Score=41.83 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=20.3
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
=|++|+|.+|+|||+|+..++.+
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999888764
No 304
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.13 E-value=0.16 Score=42.27 Aligned_cols=22 Identities=32% Similarity=0.687 Sum_probs=19.5
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|.+|+|||+|+..+..+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999888754
No 305
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.08 E-value=0.16 Score=41.95 Aligned_cols=22 Identities=32% Similarity=0.709 Sum_probs=19.6
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|.+|+|||+|+..+..+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 7899999999999999887753
No 306
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.07 E-value=0.2 Score=44.02 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.5
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+|-++.|.|++|+||||++..+...
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999877653
No 307
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.04 E-value=2.1 Score=43.52 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=23.1
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~ 252 (348)
.+...+.|.|.+|+||||++..++...++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44568999999999999999999876544
No 308
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.04 E-value=0.15 Score=42.88 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.8
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..+..+
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999988764
No 309
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=89.97 E-value=0.18 Score=41.40 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.6
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..+..+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999888743
No 310
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.96 E-value=0.21 Score=45.59 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=20.5
Q ss_pred CceeEeecCCCCcHHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+.-++|.|++|+|||+|+..++..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 567899999999999999877653
No 311
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.96 E-value=0.55 Score=47.48 Aligned_cols=22 Identities=36% Similarity=0.526 Sum_probs=18.7
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
-++++||+|||||.|+..++..
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHH
T ss_pred ceEeeCCCCCcHHHHHHHHHhc
Confidence 3899999999999999877654
No 312
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.91 E-value=0.16 Score=42.34 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=19.8
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..+..+
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999888754
No 313
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.91 E-value=0.21 Score=42.18 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=19.6
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|++|+|.+|+|||+|+..+..+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999887754
No 314
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.90 E-value=0.22 Score=44.98 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=21.2
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
++-++.|+|++|+||||++..+...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4558999999999999999887653
No 315
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.89 E-value=0.21 Score=41.28 Aligned_cols=22 Identities=32% Similarity=0.771 Sum_probs=19.7
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|.+|+|||+|+..+..+
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999888754
No 316
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=89.86 E-value=0.16 Score=52.86 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=24.4
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~i 246 (348)
.=+.+.+|+.++|+|++|+|||||+..+
T Consensus 341 vsl~I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 341 VSVKIPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEEEEETTSEEEEECSTTSSHHHHHTTT
T ss_pred ceeEecCCCEEEEEeeCCCCHHHHHHHH
Confidence 3468999999999999999999998643
No 317
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.86 E-value=0.22 Score=42.71 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.2
Q ss_pred eeEeecCCCCcHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~ 248 (348)
|+.|+|++|||||+|+..++.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999988874
No 318
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.83 E-value=0.17 Score=47.02 Aligned_cols=21 Identities=29% Similarity=0.659 Sum_probs=17.8
Q ss_pred eEeecCCCCcHHHHHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n 249 (348)
++|.|++|||||+|+..+++.
T Consensus 39 lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567799999999999877754
No 319
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.81 E-value=0.18 Score=41.67 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=19.6
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|.+|+|||+|+..+..+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7899999999999999887654
No 320
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=89.77 E-value=0.17 Score=45.23 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.0
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|||||+|+..++.+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 7999999999999999988754
No 321
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.76 E-value=0.2 Score=41.26 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.0
Q ss_pred cCceeEeecCCCCcHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+.-++.|+|++|+|||+|+..+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 556899999999999999988764
No 322
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.75 E-value=0.22 Score=44.34 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.6
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.+|.+++|.|++|+||||++..+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999887664
No 323
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=89.69 E-value=0.18 Score=42.05 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=19.7
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..+..+
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999887654
No 324
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.69 E-value=0.18 Score=42.71 Aligned_cols=22 Identities=32% Similarity=0.709 Sum_probs=19.5
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..+..+
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999887754
No 325
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.66 E-value=0.17 Score=42.04 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=19.8
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|.+|+|||+|+..+..+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999888754
No 326
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.66 E-value=0.21 Score=44.43 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=19.5
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
.-++|.|++|+|||+|+..+++.
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 44899999999999999877654
No 327
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.65 E-value=0.16 Score=50.76 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=23.1
Q ss_pred eecccCce--eEeecCCCCcHHHHHHHHH
Q 018957 221 APYQRGGK--IGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 221 ~PigkGQr--~gIfg~~GvGKT~L~~~ii 247 (348)
+.+.+|+. ++|+|++|+|||||+..+.
T Consensus 35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~ 63 (427)
T 2qag_B 35 KSVSQGFCFNILCVGETGLGKSTLMDTLF 63 (427)
T ss_dssp HSCC-CCEEEEEEECSTTSSSHHHHHHHH
T ss_pred eEecCCCeeEEEEECCCCCCHHHHHHHHh
Confidence 56889999 9999999999999997664
No 328
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.64 E-value=0.22 Score=41.51 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=17.7
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|.+|+|||+|+ ..+.+
T Consensus 16 ki~vvG~~~~GKssL~-~~l~~ 36 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNL-KWIYS 36 (198)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHh
Confidence 7899999999999999 45543
No 329
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.61 E-value=0.18 Score=45.75 Aligned_cols=28 Identities=25% Similarity=0.157 Sum_probs=24.1
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+..++..+.|.|++|+||||++..+...
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5667889999999999999999887653
No 330
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.59 E-value=0.24 Score=45.26 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=21.3
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
.+.-+.|.|++|+|||+|+..+++..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34569999999999999998776654
No 331
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.57 E-value=0.26 Score=43.04 Aligned_cols=28 Identities=39% Similarity=0.449 Sum_probs=23.8
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
+.+|..+.|.|.+|+||||++..+....
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999998876543
No 332
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=89.56 E-value=0.21 Score=44.79 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.6
Q ss_pred eEeecCCCCcHHHHHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n 249 (348)
++|.|++|+|||+|+..+...
T Consensus 48 vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 899999999999999877653
No 333
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.54 E-value=0.2 Score=41.13 Aligned_cols=21 Identities=33% Similarity=0.744 Sum_probs=18.8
Q ss_pred eeEeecCCCCcHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~ 248 (348)
|+.|+|.+|+|||+|+..++.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999987764
No 334
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=89.52 E-value=0.22 Score=44.00 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.3
Q ss_pred eEeecCCCCcHHHHHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n 249 (348)
+-|.||+|+|||||+..++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999988754
No 335
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.39 E-value=0.2 Score=42.25 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=19.7
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|.+|+|||+|+..+..+
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999888754
No 336
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=89.37 E-value=0.24 Score=41.56 Aligned_cols=22 Identities=36% Similarity=0.777 Sum_probs=19.6
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..++.+
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999888754
No 337
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.27 E-value=0.23 Score=43.14 Aligned_cols=24 Identities=42% Similarity=0.695 Sum_probs=21.5
Q ss_pred ceeEeecCCCCcHHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
-++.|.|.+|+|||+|+..++.+.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998764
No 338
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.27 E-value=0.2 Score=43.10 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.2
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
-|+.|+|++|+|||+|+..++.+
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999888754
No 339
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.23 E-value=0.24 Score=43.50 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=21.2
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
++..+.|.|++|+||||++..+...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999887654
No 340
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.17 E-value=0.25 Score=41.96 Aligned_cols=22 Identities=41% Similarity=0.749 Sum_probs=19.7
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|.+|+|||+|+..++.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999888754
No 341
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.17 E-value=0.21 Score=41.99 Aligned_cols=24 Identities=42% Similarity=0.533 Sum_probs=20.6
Q ss_pred CceeEeecCCCCcHHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
--|+.|+|.+|+|||+|+..++.+
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999888753
No 342
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.17 E-value=0.21 Score=42.28 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=19.8
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|.+|+|||+|+..+..+
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7999999999999999888764
No 343
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.13 E-value=0.21 Score=42.23 Aligned_cols=22 Identities=32% Similarity=0.699 Sum_probs=19.6
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..+..+
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999887753
No 344
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.11 E-value=0.25 Score=41.54 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.5
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|.+|+|||+|+..+..+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999887753
No 345
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.09 E-value=0.16 Score=57.14 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=25.8
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=+.|-+||+++|.|++|+|||||+.-+.+
T Consensus 1098 isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1098 LSFSVEPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEECTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred eeEEECCCCEEEEECCCCChHHHHHHHHhc
Confidence 447899999999999999999999875543
No 346
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.08 E-value=0.49 Score=41.21 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=20.6
Q ss_pred eeEeecCCCCcHHHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
.++|.|.+|+|||||+..++....
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhhH
Confidence 578999999999999999887653
No 347
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.06 E-value=0.26 Score=43.92 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=18.6
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
++.|+|++|+||+|++..++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999877653
No 348
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.03 E-value=0.29 Score=43.45 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=21.2
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
++.++.|.|++|+||||++..+...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999887654
No 349
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.03 E-value=0.26 Score=41.62 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.7
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|.+|+|||+|+..+..+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999888754
No 350
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.03 E-value=0.19 Score=45.16 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=18.7
Q ss_pred eEeecCCCCcHHHHHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n 249 (348)
++|.|++|+|||+|+..++..
T Consensus 47 vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999877654
No 351
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.02 E-value=0.28 Score=40.61 Aligned_cols=22 Identities=27% Similarity=0.202 Sum_probs=19.2
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
++.|.|.+|+||||++..+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999877653
No 352
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.01 E-value=0.26 Score=42.51 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.2
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
-++.|+|++|+|||+|+..+..+
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999888764
No 353
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.99 E-value=0.26 Score=41.83 Aligned_cols=39 Identities=31% Similarity=0.482 Sum_probs=21.3
Q ss_pred eecceeeeeceeecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 210 LVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 210 l~TGIkvID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+.||...++.+.+ -+-=|+.|+|.+|+|||+|+..+..+
T Consensus 13 ~~~~~~~~~~~~~-~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 13 LGTENLYFQSMAK-SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp ---------------CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCccccchhccCC-CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 3445555555443 23458999999999999999888754
No 354
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.91 E-value=0.22 Score=42.55 Aligned_cols=22 Identities=50% Similarity=0.696 Sum_probs=19.5
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..+..+
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7899999999999999887653
No 355
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.88 E-value=0.27 Score=41.06 Aligned_cols=22 Identities=36% Similarity=0.751 Sum_probs=19.7
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|.+|+|||+|+..+..+
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7899999999999999888754
No 356
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.86 E-value=0.27 Score=41.85 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=19.9
Q ss_pred cCceeEeecCCCCcHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+-..++|.|++|+||||++..+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999987654
No 357
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.82 E-value=0.27 Score=40.85 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=19.3
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
.+.|.|++|+||||++..+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999887653
No 358
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=88.82 E-value=0.25 Score=41.88 Aligned_cols=22 Identities=32% Similarity=0.777 Sum_probs=19.7
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|++|+|++|+|||+|+..+..+
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999888754
No 359
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.76 E-value=0.27 Score=43.01 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.2
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
++.|.|++|+||||++..+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999877653
No 360
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.71 E-value=0.35 Score=44.13 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=25.6
Q ss_pred ceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeec
Q 018957 227 GKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGE 265 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGE 265 (348)
+-++|.|++|+|||+++..+...... +..-.+++-+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~-~~~~~~~~~~~~ 85 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD-TEEAMIRIDMTE 85 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS-CGGGEEEEEGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC-CCcceEEeeccc
Confidence 46899999999999999877765422 122244444443
No 361
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=88.71 E-value=0.26 Score=41.84 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=19.4
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|.+|+|||+|+..+..+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999887653
No 362
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.65 E-value=0.26 Score=44.85 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.1
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
-+.|.|++|+|||||+..++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 3689999999999999988754
No 363
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.60 E-value=0.24 Score=41.80 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=19.8
Q ss_pred CceeEeecCCCCcHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.=|+.|+|++|+|||+|+..+..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34899999999999999987764
No 364
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.50 E-value=0.29 Score=44.38 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.0
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
.+.-+.|.|++|+|||+++..+++.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999877654
No 365
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.47 E-value=0.23 Score=41.95 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=19.9
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..+..+
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999888754
No 366
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=88.46 E-value=0.26 Score=41.41 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.2
Q ss_pred ceeEeecCCCCcHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~ 248 (348)
-|+.|+|.+|+|||+|+..+..
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3789999999999999987764
No 367
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=88.46 E-value=0.16 Score=44.07 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.7
Q ss_pred ceeEeecCCCCcHHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
+.++|.|++|+|||||+..++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999998777654
No 368
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=88.44 E-value=3.1 Score=38.24 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=37.2
Q ss_pred eeEeecC-CCCcHHHHHHHHHHHHHhhcCCEE-EEEEee-ccchhHHHHHHHHHHcCccccCcccCCCeeEEEEecCCCC
Q 018957 228 KIGLFGG-AGVGKTVLIMELINNVAKAHGGFS-VFAGVG-ERTREGNDLYREMIESGVIKLGDKQADSKCALVYGQMNEP 304 (348)
Q Consensus 228 r~gIfg~-~GvGKT~L~~~ii~n~a~~~~~~~-V~~~IG-ER~rEv~~~~~e~~~~~v~~~~~~~~~~rtvvV~~tsdep 304 (348)
...+++| +|+|||+++..+++.. +.. +++-.. .+..++.+.+.++.+..-. ..++.++++--.+.-
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l-----~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~------~~~~~vliiDEi~~l 117 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDV-----NADMMFVNGSDCKIDFVRGPLTNFASAASF------DGRQKVIVIDEFDRS 117 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHT-----TEEEEEEETTTCCHHHHHTHHHHHHHBCCC------SSCEEEEEEESCCCG
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHh-----CCCEEEEcccccCHHHHHHHHHHHHhhccc------CCCCeEEEEECCccc
Confidence 5566666 9999999998776532 222 333222 2233344444444443211 124778888777765
Q ss_pred H
Q 018957 305 P 305 (348)
Q Consensus 305 ~ 305 (348)
.
T Consensus 118 ~ 118 (324)
T 3u61_B 118 G 118 (324)
T ss_dssp G
T ss_pred C
Confidence 4
No 369
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=88.43 E-value=0.28 Score=41.93 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=21.1
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+-=|+.|+|.+|+|||+|+..++.+
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3348999999999999999888754
No 370
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=88.40 E-value=0.23 Score=42.83 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=20.8
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+-=|+.|+|.+|+|||+|+..++.+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3448999999999999999888764
No 371
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=88.39 E-value=0.23 Score=42.15 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=19.7
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
=|+.|+|++|+|||+|+..+..+
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999888754
No 372
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.39 E-value=0.23 Score=43.15 Aligned_cols=22 Identities=50% Similarity=0.741 Sum_probs=19.8
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..++.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7899999999999999888754
No 373
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=88.36 E-value=0.23 Score=41.58 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.0
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
=|+.|+|.+|+|||+|+..+..+
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999888753
No 374
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.34 E-value=0.28 Score=41.21 Aligned_cols=23 Identities=30% Similarity=0.751 Sum_probs=20.3
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
-|+.|+|.+|+|||+|+..+..+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 48999999999999999888753
No 375
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.33 E-value=0.16 Score=42.21 Aligned_cols=22 Identities=36% Similarity=0.706 Sum_probs=9.6
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..+..+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999887754
No 376
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.33 E-value=2.5 Score=37.70 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=34.5
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHHHhhcCCE-EEEEEeec-cchhHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNVAKAHGGF-SVFAGVGE-RTREGNDLYREMIE 279 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~-~V~~~IGE-R~rEv~~~~~e~~~ 279 (348)
+|--|.|-|+.|+||||++..+....... ++ .| ...-| .+....+.++++..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~--~~~~v-~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQL--GIRDM-VFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCE-EEEESSCSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCcc-eeeeCCCCCHHHHHHHHHHh
Confidence 57778899999999999998877654322 33 23 23344 34556666777655
No 377
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.32 E-value=0.18 Score=55.30 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=25.8
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|++++|+|++|+|||||+.-+.
T Consensus 691 dVSl~I~~GeivaIiGpNGSGKSTLLklLa 720 (986)
T 2iw3_A 691 DINFQCSLSSRIAVIGPNGAGKSTLINVLT 720 (986)
T ss_dssp EEEEEEETTCEEEECSCCCHHHHHHHHHHT
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 445689999999999999999999997554
No 378
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=88.29 E-value=0.22 Score=42.76 Aligned_cols=22 Identities=41% Similarity=0.724 Sum_probs=19.2
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..+..+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 7899999999999999888743
No 379
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.27 E-value=0.26 Score=50.34 Aligned_cols=28 Identities=32% Similarity=0.533 Sum_probs=23.3
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|-...+|+..+|+|++|+|||||+.-+.
T Consensus 19 l~~~~~Gei~gLiGpNGaGKSTLlkiL~ 46 (538)
T 3ozx_A 19 LPTPKNNTILGVLGKNGVGKTTVLKILA 46 (538)
T ss_dssp CCCCCTTEEEEEECCTTSSHHHHHHHHT
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHh
Confidence 3445699999999999999999997543
No 380
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.27 E-value=0.34 Score=40.67 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=19.6
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
..+.|.|++|+||||++..+...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999877653
No 381
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=88.26 E-value=0.25 Score=41.30 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=20.8
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.+.=|+.|+|++|+|||+|+..+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999988764
No 382
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.23 E-value=0.28 Score=41.24 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.7
Q ss_pred cCceeEeecCCCCcHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+-=|+.|+|.+|+|||+|+..++.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999988874
No 383
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=88.20 E-value=0.23 Score=42.65 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=18.2
Q ss_pred eeEeecCCCCcHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii 247 (348)
|+.|+|++|+|||+|+..++
T Consensus 25 ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999998774
No 384
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.19 E-value=0.18 Score=51.29 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=23.9
Q ss_pred eecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 221 APYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 221 ~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+.+.+|+.++|.|++|+||||++..++.
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHHGG
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3467899999999999999999987654
No 385
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=88.18 E-value=0.32 Score=45.31 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=23.1
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+-.+|.-+.|.|++|+||||++..+...
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4456777999999999999999887653
No 386
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=88.15 E-value=0.24 Score=43.06 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.0
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..+..+
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999888764
No 387
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=88.14 E-value=0.25 Score=45.74 Aligned_cols=21 Identities=33% Similarity=0.638 Sum_probs=18.2
Q ss_pred eeEeecCCCCcHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~ 248 (348)
+++|+|++|+|||||+..+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999976654
No 388
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=88.14 E-value=0.44 Score=41.92 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.0
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
.++|.|+.|+||||++..+...
T Consensus 14 iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999877643
No 389
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.14 E-value=0.32 Score=44.52 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=19.7
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
-.+.|.|++|+||||++..+...
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999877643
No 390
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.12 E-value=0.29 Score=44.39 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=22.6
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
..|..+.|.|++|+|||+|+.+++..
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45778999999999999999998753
No 391
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.05 E-value=0.59 Score=40.60 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.0
Q ss_pred ceeEeecCCCCcHHHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
..++|.|++|+|||||+..++....
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 4678999999999999998887643
No 392
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.05 E-value=0.53 Score=45.22 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=23.7
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNVAK 252 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~ 252 (348)
.+.-+.|+|++|+|||+++..++.+...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~ 61 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM 61 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5677899999999999999988876543
No 393
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=88.01 E-value=0.34 Score=44.45 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.1
Q ss_pred CceeEeecCCCCcHHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+-+.|.|++|+|||+|+.++.+.
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 578999999999999999988754
No 394
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=87.96 E-value=0.27 Score=42.85 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.9
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..++.+
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999988764
No 395
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=87.96 E-value=0.31 Score=41.61 Aligned_cols=22 Identities=36% Similarity=0.767 Sum_probs=19.5
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..+..+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999887653
No 396
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.93 E-value=0.2 Score=41.56 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.5
Q ss_pred ccCceeEeecCCCCcHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
-+.=|+.|+|++|+|||+|+..+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 345689999999999999998765
No 397
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=87.91 E-value=0.24 Score=42.60 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=20.3
Q ss_pred cCceeEeecCCCCcHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+--|+.|+|++|+|||+|+..+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 344899999999999999987763
No 398
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=87.91 E-value=0.26 Score=46.17 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=22.2
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
-|+.+++|+|.+|+|||||+..++.+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 36679999999999999999887643
No 399
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=87.89 E-value=0.31 Score=41.91 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=18.9
Q ss_pred eeEeecCCCCcHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~ 248 (348)
|+.|+|.+|+|||+|+..+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 789999999999999987764
No 400
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=87.84 E-value=0.85 Score=45.35 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=21.7
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
+...+.|+|++|||||+|+..++...
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 44567999999999999998887665
No 401
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.74 E-value=0.35 Score=41.19 Aligned_cols=23 Identities=39% Similarity=0.730 Sum_probs=19.9
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
=|+.|+|++|+|||+|+..+..+
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999887743
No 402
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=87.70 E-value=0.32 Score=43.11 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.6
Q ss_pred eeEeecCCCCcHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii 247 (348)
|+.|+|++|||||+|+..++
T Consensus 39 kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999998776
No 403
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=87.70 E-value=0.27 Score=42.19 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.1
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
=|+.|+|++|+|||+|+..+..+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999888754
No 404
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=87.66 E-value=0.32 Score=43.14 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.8
Q ss_pred eeEeecCCCCcHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~ 248 (348)
|++|+|.+|+|||+|+..+..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 789999999999999987764
No 405
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=87.65 E-value=0.32 Score=47.89 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=25.1
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|-.+.+|.+++|+|.+|+|||||+..+..
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 33577899999999999999999988775
No 406
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.54 E-value=0.33 Score=41.71 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=19.7
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|.+|+|||+|+..+..+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 8999999999999999887753
No 407
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=87.52 E-value=0.34 Score=49.36 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=22.2
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+|.-++|+|++|+|||+|+..+...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999876654
No 408
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.45 E-value=2.3 Score=38.40 Aligned_cols=53 Identities=21% Similarity=0.122 Sum_probs=32.9
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHHHh-hcCCEEEEEEeecc-chhHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGFSVFAGVGER-TREGNDLYREMI 278 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~a~-~~~~~~V~~~IGER-~rEv~~~~~e~~ 278 (348)
.+|.-+.|-|..|+||||++..+...... . ++.|+...=|. +....+.++++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~--g~~v~~~treP~~t~~g~~ir~~l 73 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIY--GVNNVVLTREPGGTLLNESVRNLL 73 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHH--CGGGEEEEESSCSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcc--CceeeEeeeCCCCChHHHHHHHHH
Confidence 36778889999999999999888765432 2 33333323332 234445555554
No 409
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=87.42 E-value=0.37 Score=44.15 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=19.9
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
-|+||+|++|+||||++..+...
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 37899999999999999877654
No 410
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=87.40 E-value=0.4 Score=48.62 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=24.4
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
|.=+.+.+ +.++|+|++|+|||||+..+.-
T Consensus 22 ~vsl~i~~-e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 22 ARTFDFDE-LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCS-SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEcc-ceEEEECCCCCcHHHHHHHHhc
Confidence 33457788 9999999999999999975543
No 411
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.40 E-value=0.17 Score=52.04 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=25.1
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
.+.+|+.+.|+|.+|+|||||+..+....
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhh
Confidence 46799999999999999999998776543
No 412
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=87.40 E-value=0.28 Score=42.12 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.5
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|.+|+|||+|+..+..+
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 7899999999999999887653
No 413
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=87.38 E-value=0.34 Score=41.15 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=19.0
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|.+|+|||+|+..+..+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999887643
No 414
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=87.35 E-value=0.36 Score=43.46 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=19.2
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
.++|.|++|+||||++..+...
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999877653
No 415
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=87.24 E-value=0.33 Score=54.48 Aligned_cols=30 Identities=27% Similarity=0.500 Sum_probs=25.9
Q ss_pred eceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 218 DLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 218 D~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
|.=+.+.+|++++|.|++|+|||||+.-+.
T Consensus 1051 ~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~ 1080 (1284)
T 3g5u_A 1051 GLSLEVKKGQTLALVGSSGCGKSTVVQLLE 1080 (1284)
T ss_dssp SCCEEECSSSEEEEECSSSTTHHHHHHHHT
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344789999999999999999999997554
No 416
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=87.22 E-value=0.36 Score=41.27 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.5
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|.+|+|||+|+..+..+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999887753
No 417
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=87.18 E-value=0.41 Score=42.25 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=26.6
Q ss_pred eEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeecc
Q 018957 229 IGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGER 266 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER 266 (348)
+.|.|++|+|||+++.+++.. +.-++|+..++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-----APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-----CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-----CCCeEEEecCCC
Confidence 689999999999999887632 234689999876
No 418
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=87.12 E-value=0.23 Score=49.25 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.7
Q ss_pred eeEeecCCCCcHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~ 248 (348)
.++|+|++|+|||||+..+..
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 999999999999999976553
No 419
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=87.10 E-value=0.82 Score=40.31 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=25.2
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAK 252 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~ 252 (348)
..+|+-..+.|+.|+||||.+..+++|...
T Consensus 5 ~~~g~i~v~~G~mgsGKTT~ll~~a~r~~~ 34 (191)
T 1xx6_A 5 KDHGWVEVIVGPMYSGKSEELIRRIRRAKI 34 (191)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 456778888999999999999999988753
No 420
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=86.96 E-value=0.34 Score=41.32 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.1
Q ss_pred cCceeEeecCCCCcHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+.=|+.|+|++|+|||+|+..+..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999987753
No 421
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=86.92 E-value=0.35 Score=41.94 Aligned_cols=22 Identities=41% Similarity=0.685 Sum_probs=19.3
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..+..+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 7899999999999999888753
No 422
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=86.92 E-value=0.28 Score=41.29 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.0
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
-|+.|+|.+|+|||+|+..+..+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999887654
No 423
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=86.82 E-value=0.46 Score=41.42 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=19.3
Q ss_pred cCceeEeecCCCCcHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii 247 (348)
++-.++|.|++|+||||++..+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34568999999999999998764
No 424
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.81 E-value=0.36 Score=46.27 Aligned_cols=21 Identities=33% Similarity=0.417 Sum_probs=18.0
Q ss_pred eeEeecCCCCcHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~ 248 (348)
-+||.|++|+|||||+..+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999976644
No 425
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=86.81 E-value=0.45 Score=40.60 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=18.8
Q ss_pred eeEeecCCCCcHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~ 248 (348)
.++|.|++|+||||++..+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999987765
No 426
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=86.79 E-value=0.39 Score=44.11 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=21.1
Q ss_pred ceeEeecCCCCcHHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
+-+.|.|++|+|||+|+.++.+..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999887654
No 427
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=86.75 E-value=0.6 Score=47.98 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=22.8
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
.++-+.|.|++|+|||+++..++....
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~ 229 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAE 229 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999988876543
No 428
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=86.74 E-value=0.29 Score=45.54 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=21.8
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
..|.-+.|.|++|+|||+|+..+.+.
T Consensus 44 ~~~~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 44 CTGGHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp HHTCCEEEESCCCHHHHHHHHHHHHH
T ss_pred HcCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34678999999999999999877653
No 429
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.67 E-value=0.47 Score=42.62 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=26.5
Q ss_pred CceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEEEeeccc
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERT 267 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~~IGER~ 267 (348)
+.-+.|.|++|+|||+|+..+.+.... ...-.+++-+..-.
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~-~~~~~~~v~~~~~~ 69 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSR-WQGPFISLNCAALN 69 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTT-TTSCEEEEEGGGSC
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCc-cCCCeEEEecCCCC
Confidence 457899999999999999866543211 11234555555443
No 430
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=86.55 E-value=0.46 Score=42.05 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.0
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
++.|.|++|+||||++..+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999877653
No 431
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=86.49 E-value=0.32 Score=45.62 Aligned_cols=20 Identities=35% Similarity=0.649 Sum_probs=17.5
Q ss_pred eeEeecCCCCcHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii 247 (348)
+++|+|++|+|||||+..+.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~ 39 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLF 39 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 44999999999999998765
No 432
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=86.44 E-value=0.36 Score=54.26 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=25.2
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+.+|++++|.|++|+|||||+.-+.
T Consensus 409 isl~i~~G~~~~ivG~sGsGKSTl~~ll~ 437 (1284)
T 3g5u_A 409 LNLKVKSGQTVALVGNSGCGKSTTVQLMQ 437 (1284)
T ss_dssp EEEEECTTCEEEEECCSSSSHHHHHHHTT
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 44689999999999999999999987543
No 433
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=86.42 E-value=0.59 Score=45.45 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=23.4
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNVAK 252 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~a~ 252 (348)
.-+-+.|+|++|+|||+++..++.+..+
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~ 79 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLL 79 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3578899999999999998878877654
No 434
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=86.40 E-value=0.46 Score=43.17 Aligned_cols=25 Identities=32% Similarity=0.210 Sum_probs=21.4
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
++..+.|.|.+|+||||++..+...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999999888754
No 435
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.32 E-value=0.37 Score=44.92 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=21.9
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
-+++..++|.|++|+||||++..++..
T Consensus 33 ~~~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 33 PRDLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp TTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 345556999999999999999877664
No 436
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=86.28 E-value=0.45 Score=41.10 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=21.6
Q ss_pred CceeEeecCCCCcHHHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
--++.|.|.+|+|||||+..++.+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3478999999999999999988764
No 437
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=86.23 E-value=0.37 Score=42.28 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=19.8
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
=|+.|+|.+|+|||+|+..++.+
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999877643
No 438
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=86.12 E-value=0.48 Score=41.30 Aligned_cols=22 Identities=45% Similarity=0.721 Sum_probs=19.6
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
|+.|+|++|+|||+|+..+..+
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 7899999999999999887753
No 439
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=86.11 E-value=0.41 Score=43.61 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=21.6
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
.|.-.++|.|++|+|||+++..+++..
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 343458999999999999998887653
No 440
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=86.07 E-value=0.39 Score=48.78 Aligned_cols=24 Identities=38% Similarity=0.552 Sum_probs=20.1
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+-+| ++|+|++|+|||+|+..+..
T Consensus 63 ip~G--vLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 63 IPKG--VLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp CCSE--EEEECSSSSSHHHHHHHHHH
T ss_pred CCce--EEEECCCCCCHHHHHHHHHH
Confidence 4566 99999999999999986654
No 441
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=85.91 E-value=0.2 Score=42.45 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=5.0
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
=|+.|+|++|+|||+|+..+..+
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999887755
No 442
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=85.89 E-value=0.41 Score=43.62 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=18.8
Q ss_pred eeEeecCCCCcHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~ 248 (348)
+++|+|.+|+|||||+..+..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 789999999999999987764
No 443
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=85.83 E-value=0.24 Score=42.72 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=19.7
Q ss_pred eeEeecCCCCcHHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
.+.|.|++|+||||++..+....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999998887654
No 444
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=85.79 E-value=0.48 Score=42.76 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=20.0
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
.|.--+.|+|++|+||+|++..++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34444678999999999999877653
No 445
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=85.77 E-value=0.45 Score=40.48 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.5
Q ss_pred eeEeecCCCCcHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii 247 (348)
|+.|+|++|+|||+|+..+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~ 41 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVF 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999987544
No 446
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=85.74 E-value=0.27 Score=42.61 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=19.6
Q ss_pred eeEeecCCCCcHHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
|+.|+|.+|+|||+|+..++.+.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999998866543
No 447
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=85.72 E-value=0.48 Score=49.24 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=23.2
Q ss_pred ceeecccC-----ceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRG-----GKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkG-----Qr~gIfg~~GvGKT~L~~~ii 247 (348)
.-+.+.+| +.++|+|++|+|||||+..+.
T Consensus 366 vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~ 399 (608)
T 3j16_B 366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLA 399 (608)
T ss_dssp CEEEECCEECCTTCEEEEESCTTSSHHHHHHHHH
T ss_pred eEEEEecCccccceEEEEECCCCCcHHHHHHHHh
Confidence 34566666 789999999999999997554
No 448
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.55 E-value=0.55 Score=43.47 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=20.4
Q ss_pred ceeEeecCCCCcHHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
..++|.|++|+|||+++..+++..
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 349999999999999998877654
No 449
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=85.33 E-value=0.53 Score=44.63 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=20.0
Q ss_pred CceeEeecCCCCcHHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+..++|.|++|||||+++..++..
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999877653
No 450
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=85.29 E-value=0.46 Score=42.56 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.6
Q ss_pred ceeEeecCCCCcHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~ 248 (348)
-+++|+|.+|+|||+|+..++.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999988764
No 451
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=85.28 E-value=0.51 Score=45.03 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.1
Q ss_pred CceeEeecCCCCcHHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
..-++|.|++|+|||+|+..+++.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999877653
No 452
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.10 E-value=0.5 Score=44.34 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=19.2
Q ss_pred eEeecCCCCcHHHHHHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
+++.|++|+|||+++..++...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999998777653
No 453
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.06 E-value=0.5 Score=53.26 Aligned_cols=29 Identities=28% Similarity=0.524 Sum_probs=25.1
Q ss_pred ceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 219 LLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 219 ~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
.=+.+-+|++++|.|++|+|||||+.-+.
T Consensus 437 isl~i~~G~~vaivG~sGsGKSTll~ll~ 465 (1321)
T 4f4c_A 437 MNLRVNAGQTVALVGSSGCGKSTIISLLL 465 (1321)
T ss_dssp EEEEECTTCEEEEEECSSSCHHHHHHHHT
T ss_pred eEEeecCCcEEEEEecCCCcHHHHHHHhc
Confidence 34688999999999999999999997554
No 454
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=84.96 E-value=0.36 Score=40.53 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=19.8
Q ss_pred cCceeEeecCCCCcHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii 247 (348)
+-=|+.|+|++|+|||+|+..+.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 44589999999999999998764
No 455
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=84.78 E-value=0.47 Score=48.75 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=23.1
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
.+..|+.++|.|++|+|||+|+..+..
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 356788999999999999999986654
No 456
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=84.69 E-value=0.84 Score=47.07 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=32.7
Q ss_pred CceeEeecCCCCcHHHHHHHHHHHHHhhcC-CEEEEEEeeccchhHHHHHHHHHHcC
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINNVAKAHG-GFSVFAGVGERTREGNDLYREMIESG 281 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n~a~~~~-~~~V~~~IGER~rEv~~~~~e~~~~~ 281 (348)
..-..|.||+|+|||+++..++....+..+ .+.|. .-...-+.++.+.+.+.+
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~---a~tn~A~~~l~~~l~~~~ 248 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC---APSNIAVDQLTEKIHQTG 248 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEE---ESSHHHHHHHHHHHHTTT
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE---eCcHHHHHHHHHHHHhcC
Confidence 446789999999999999998876543222 23333 333444445555554443
No 457
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=84.41 E-value=1.3 Score=46.44 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=22.3
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
.+...++|.|++|||||+++..++...
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 345568999999999999998877654
No 458
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=84.40 E-value=0.49 Score=46.90 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=27.0
Q ss_pred eeceeecccCceeEeecCCCCcHHHHHHHHHH
Q 018957 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 217 ID~l~PigkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
-|.-+.+-.|..++|+|++|+|||||+..+..
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg 179 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTR 179 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCS
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHc
Confidence 35556788999999999999999999986654
No 459
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=84.35 E-value=0.62 Score=41.44 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.5
Q ss_pred ccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 224 QRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 224 gkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
..|.=++|.|++|+|||||+.+++..
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 35677899999999999999999864
No 460
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.14 E-value=1.8 Score=46.13 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=22.1
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNVA 251 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~a 251 (348)
+...+.|.|++|+|||+|+..++....
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 344589999999999999988877653
No 461
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=84.09 E-value=0.29 Score=40.32 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=18.2
Q ss_pred cCceeEeecCCCCcHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMEL 246 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~i 246 (348)
.+.-+.|.|++|+|||+++..+
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCcEEEECCCCccHHHHHHHH
Confidence 3456899999999999998654
No 462
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=84.08 E-value=0.63 Score=44.26 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=20.1
Q ss_pred CceeEeecCCCCcHHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
..-+.|.|++|||||+|+..+++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 446899999999999999877653
No 463
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=84.04 E-value=0.55 Score=47.35 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=20.2
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+.+| ++|.|++|+|||+|+..++..
T Consensus 48 ~p~g--vLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 48 MPKG--ILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 3355 899999999999999876643
No 464
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=84.39 E-value=0.21 Score=42.75 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=20.6
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+.=|+.|+|.+|+|||+|+..+..+
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4458999999999999999777643
No 465
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=83.90 E-value=0.96 Score=45.92 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=22.1
Q ss_pred CceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINNVAK 252 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n~a~ 252 (348)
.+.+.|.|++|+|||+++..-|.+..+
T Consensus 22 ~~~~lV~a~aGsGKT~~l~~ri~~l~~ 48 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLVHRIAWLMS 48 (647)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence 456899999999999998887766554
No 466
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=83.88 E-value=0.52 Score=40.56 Aligned_cols=21 Identities=48% Similarity=0.773 Sum_probs=18.5
Q ss_pred eeEeecCCCCcHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~ 248 (348)
|+.|+|.+|+|||+|+..++.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999977663
No 467
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=83.73 E-value=0.42 Score=44.27 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=20.1
Q ss_pred CceeEeecCCCCcHHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
.+-+.|.|++|+|||+|+..+.+.
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHh
Confidence 345999999999999999877654
No 468
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=83.69 E-value=0.63 Score=45.94 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=19.6
Q ss_pred ceeEeecCCCCcHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n 249 (348)
.-++|+|++|||||+|+..+++.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999877654
No 469
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=83.57 E-value=0.76 Score=44.91 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=22.4
Q ss_pred cccCce--eEeecCCCCcHHHHHHHHHHH
Q 018957 223 YQRGGK--IGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 223 igkGQr--~gIfg~~GvGKT~L~~~ii~n 249 (348)
+.+|++ +.|+|++|+||||++..++..
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 446777 999999999999999877654
No 470
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=83.56 E-value=0.77 Score=42.84 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=17.7
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
++-.++|-|++|+||||++..+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3446899999999999999877653
No 471
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=83.51 E-value=0.64 Score=45.94 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=23.7
Q ss_pred ecccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 222 PYQRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 222 PigkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
-+.+|.+++|+|.+|+|||||+..+...
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4678899999999999999999877643
No 472
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=83.35 E-value=0.74 Score=45.43 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=21.4
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
.+..+++.|++|||||+|+..+++..
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 34569999999999999998777653
No 473
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=83.26 E-value=0.68 Score=42.82 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.4
Q ss_pred ceeEeecCCCCcHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~ 248 (348)
-+++|+|.+|+|||+|+..+..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 3789999999999999988764
No 474
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=83.21 E-value=0.65 Score=49.59 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.3
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+..|..++|.|++|||||+|+..+..
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 56788999999999999999976643
No 475
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=83.15 E-value=0.87 Score=48.96 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=17.4
Q ss_pred eEeecCCCCcHHHHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~ 248 (348)
+++.|++|||||+|+..+++
T Consensus 241 ILL~GPPGTGKT~LAraiA~ 260 (806)
T 3cf2_A 241 ILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp EEEECCTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999876653
No 476
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=83.02 E-value=0.33 Score=46.71 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=25.7
Q ss_pred ceeee-eceeecccCceeEeecCCCCcHHHHHHHH
Q 018957 213 GIKVV-DLLAPYQRGGKIGLFGGAGVGKTVLIMEL 246 (348)
Q Consensus 213 GIkvI-D~l~PigkGQr~gIfg~~GvGKT~L~~~i 246 (348)
+++.+ |.=+.+.+| ..+|+|+.|+|||||+.-+
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI 80 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDAL 80 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHH
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHH
Confidence 44444 334678899 9999999999999998543
No 477
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=82.97 E-value=0.34 Score=41.82 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.6
Q ss_pred CceeEeecCCCCcHHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
--|+.|+|.+|+|||+|+..+..+
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 348999999999999999887654
No 478
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=82.94 E-value=0.82 Score=40.63 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.3
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
||..+.|-|..|+||||++..+...
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4667899999999999999877654
No 479
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=82.83 E-value=0.67 Score=42.85 Aligned_cols=20 Identities=35% Similarity=0.516 Sum_probs=18.1
Q ss_pred eeEeecCCCCcHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii 247 (348)
.++|.|++|+||||++..+.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999998776
No 480
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=82.81 E-value=0.75 Score=41.50 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=18.8
Q ss_pred ceeEeecCCCCcHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~ 248 (348)
=|++|+|.+|+|||+|+..+..
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhC
Confidence 3789999999999999977653
No 481
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=82.74 E-value=0.85 Score=41.34 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=20.5
Q ss_pred ceeEeecCCCCcHHHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
..+.|.|++|+|||+++..+++..
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECcCCcCHHHHHHHHHHHh
Confidence 358999999999999998887654
No 482
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=82.52 E-value=0.76 Score=41.91 Aligned_cols=21 Identities=43% Similarity=0.558 Sum_probs=19.0
Q ss_pred eeEeecCCCCcHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~ 248 (348)
+++++|.+|+|||+|+..+..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 789999999999999988764
No 483
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=82.50 E-value=3.1 Score=39.06 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.3
Q ss_pred eEeecCCCCcHHHHHHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
.++.|++|+|||+++..+++..
T Consensus 27 ~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 27 LLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHHHH
Confidence 7888999999999999887654
No 484
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=82.49 E-value=0.94 Score=46.71 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=17.7
Q ss_pred eeEeecCCCCcHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii 247 (348)
-++|.|++|+|||+|+..+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la 348 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFIS 348 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSS
T ss_pred ceEEECCCchHHHHHHHHHH
Confidence 69999999999999987654
No 485
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=82.48 E-value=0.68 Score=42.23 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=18.0
Q ss_pred ecccCc--eeEeecCCCCcHHHHHHHHH
Q 018957 222 PYQRGG--KIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 222 PigkGQ--r~gIfg~~GvGKT~L~~~ii 247 (348)
|+-||- ++.|+|.+|+|||||+..+.
T Consensus 2 p~~~g~~~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 2 PLGSGFEFTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp -----CEEEEEEEECTTSSHHHHHHHHS
T ss_pred CCcCccEEEEEEECCCCCCHHHHHHHHh
Confidence 444553 79999999999999987653
No 486
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=82.40 E-value=1.8 Score=44.08 Aligned_cols=49 Identities=14% Similarity=0.170 Sum_probs=34.7
Q ss_pred eeecccCceeEeecCCCCcHHHHHHHHHHHHHhh-cC-CEEEEEEeeccchh
Q 018957 220 LAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKA-HG-GFSVFAGVGERTRE 269 (348)
Q Consensus 220 l~PigkGQr~gIfg~~GvGKT~L~~~ii~n~a~~-~~-~~~V~~~IGER~rE 269 (348)
.+.+.+|..++|.|.+|+|||+++..++...+.. .+ ++.+| ++.-++.|
T Consensus 161 ~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~-liDpK~~e 211 (512)
T 2ius_A 161 VADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFI-MIDPKMLE 211 (512)
T ss_dssp EEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEE-EECCSSSG
T ss_pred EEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEE-EECCchhh
Confidence 4567889999999999999999999888765432 23 34444 45555433
No 487
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=82.31 E-value=0.9 Score=39.36 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=19.7
Q ss_pred CceeEeecCCCCcHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+..++|.|++|+||||++..+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999987665
No 488
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=82.31 E-value=0.8 Score=44.35 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.4
Q ss_pred eeEeecCCCCcHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n 249 (348)
-++|.|++|+|||+|+..++..
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 4799999999999999988764
No 489
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=82.30 E-value=0.69 Score=43.36 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=21.2
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
|-.+++|+|.+|+|||||+..++.+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457999999999999999888753
No 490
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=82.13 E-value=1.6 Score=38.67 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=22.1
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+-+|+-+.|.|+.|+|||+++...+.+
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 457899999999999999877665544
No 491
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=82.09 E-value=1.1 Score=44.50 Aligned_cols=27 Identities=33% Similarity=0.345 Sum_probs=23.0
Q ss_pred CceeEeecCCCCcHHHHHHHHHHHHHh
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINNVAK 252 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n~a~ 252 (348)
...+.|+|.+|+||||++..++...++
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999998876543
No 492
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.06 E-value=0.95 Score=41.09 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.1
Q ss_pred eeEeecCCCCcHHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
.+.|.|++|+|||+++..+++..
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999998887654
No 493
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=81.57 E-value=0.82 Score=44.90 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=19.5
Q ss_pred ceeEeecCCCCcHHHHHHHHHH
Q 018957 227 GKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 227 Qr~gIfg~~GvGKT~L~~~ii~ 248 (348)
=|++|+|++|+|||||+..++.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g 202 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILN 202 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999987764
No 494
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=81.46 E-value=0.7 Score=45.80 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=17.2
Q ss_pred eEeecCCCCcHHHHHHHHHH
Q 018957 229 IGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 229 ~gIfg~~GvGKT~L~~~ii~ 248 (348)
++|+|++|+|||||+..++.
T Consensus 34 I~lvG~sGaGKSTLln~L~g 53 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFL 53 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHhC
Confidence 49999999999999976653
No 495
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=81.20 E-value=1.2 Score=48.69 Aligned_cols=31 Identities=16% Similarity=-0.035 Sum_probs=27.3
Q ss_pred eeceeecccCceeEeecCCCCcHHHHHHHHH
Q 018957 217 VDLLAPYQRGGKIGLFGGAGVGKTVLIMELI 247 (348)
Q Consensus 217 ID~l~PigkGQr~gIfg~~GvGKT~L~~~ii 247 (348)
-|.-+.+.+|+-++|.|+.|+||||++..+.
T Consensus 653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred ccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4667788899999999999999999998873
No 496
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=81.02 E-value=0.77 Score=41.98 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=21.4
Q ss_pred cCceeEeecCCCCcHHHHHHHHHHH
Q 018957 225 RGGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 225 kGQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+.=|+.|+|.+|+|||+|+..++.+
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~ 178 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTN 178 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCChHHHHHHHHhC
Confidence 4458999999999999999888764
No 497
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=80.79 E-value=0.65 Score=47.08 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=21.5
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHH
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELIN 248 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~ 248 (348)
+..|.-++|.|++|+|||+|+..+..
T Consensus 38 l~~~~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp HHHTCEEEEECCSSSSHHHHHHHGGG
T ss_pred HhcCCeeEeecCchHHHHHHHHHHHH
Confidence 34567899999999999999976654
No 498
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=80.79 E-value=1 Score=41.90 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=19.6
Q ss_pred eeEeecCCCCcHHHHHHHHHHHH
Q 018957 228 KIGLFGGAGVGKTVLIMELINNV 250 (348)
Q Consensus 228 r~gIfg~~GvGKT~L~~~ii~n~ 250 (348)
-+.|.|++|+|||+++..+++..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999998877654
No 499
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=80.71 E-value=2.2 Score=38.67 Aligned_cols=47 Identities=21% Similarity=0.167 Sum_probs=28.6
Q ss_pred cccCceeEeecCCCCcHHHHHHHHHHHHHhhcCCEEEEE-Eeeccchh
Q 018957 223 YQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFA-GVGERTRE 269 (348)
Q Consensus 223 igkGQr~gIfg~~GvGKT~L~~~ii~n~a~~~~~~~V~~-~IGER~rE 269 (348)
-.+|+-..+.|+.|+||||.+.+++.|...+...+.||- .++.|..|
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge 72 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSE 72 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-------
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchH
Confidence 356777778899999999999999988754333344432 55666443
No 500
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=80.69 E-value=0.95 Score=42.23 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=20.5
Q ss_pred CceeEeecCCCCcHHHHHHHHHHH
Q 018957 226 GGKIGLFGGAGVGKTVLIMELINN 249 (348)
Q Consensus 226 GQr~gIfg~~GvGKT~L~~~ii~n 249 (348)
+-|+.++|.+|+|||+|+..+..+
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 358999999999999999877654
Done!