BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018958
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 251 bits (642), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 118/217 (54%), Positives = 152/217 (70%), Gaps = 5/217 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
VP S+DWR KGAVT +K+Q +CG CWAF+ + AVEGI +I++ L+ LSEQ+L+DC T+
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 196 NNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPA-AAKISNYEEVPSGDE 254
N GC GG + AF +I Q GI TE YPY+A GTC +++ A A I +E VP DE
Sbjct: 62 NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDE 121
Query: 255 QALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLI 314
ALLKAV+ QPVS+AI A ++FQ Y EG+F G CGT+LDH V IVG+GTT DG YW +
Sbjct: 122 NALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYWTV 181
Query: 315 KNSWGNTWGDAGYMKIVR----DEGLCGIGTRSSYPL 347
KNSWG WG+ GY+++ R EGLCGI +SYP+
Sbjct: 182 KNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPI 218
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 248 bits (632), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 134/315 (42%), Positives = 192/315 (60%), Gaps = 15/315 (4%)
Query: 38 THEQSVVEIHEKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKANKEGNRTYKLGTNQFS 97
T + ++++ E WM +H + YK+ EK R +IFK+NL+YI++ NK+ N +Y LG N F+
Sbjct: 57 TSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKK-NNSYWLGLNVFA 115
Query: 98 DLTNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKGAVTPIKNQKEC 157
D++NDEF+ YTG + ++ + N ++P +DWR KGAVTP+KNQ C
Sbjct: 116 DMSNDEFKEKYTG--SIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSC 173
Query: 158 GCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGNNGCLGGSREKAFAYIIQNQGI 217
G WAF+AV+ +E I KIR+GNL + SEQ+LLDC + GC GG A + Q GI
Sbjct: 174 GSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRR-SYGCNGGYPWSALQLVAQ-YGI 231
Query: 218 ATEDEYPYQAVPGTCSAAQK-PAAAKISNYEEVPSGDEQALLKAVSMQPVSIAIAAYSTE 276
+ YPY+ V C + +K P AAK +V +E ALL +++ QPVS+ + A +
Sbjct: 232 HYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKD 291
Query: 277 FQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDE-- 334
FQ Y+ GIF G CG ++DHAV VG+ G NY LI+NSWG WG+ GY++I R
Sbjct: 292 FQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILIRNSWGTGWGENGYIRIKRGTGN 346
Query: 335 --GLCGIGTRSSYPL 347
G+CG+ T S YP+
Sbjct: 347 SYGVCGLYTSSFYPV 361
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 245 bits (626), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 110/223 (49%), Positives = 152/223 (68%), Gaps = 8/223 (3%)
Query: 133 MTDVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS 192
++D+P S+DWR KGAVT +K+Q +CG CWAF+ V +VEGI IR+G+L+ LSEQ+L+DC
Sbjct: 1 VSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD 60
Query: 193 TNGNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQ----KPAAAKISNYEE 248
T N+GC GG + AF YI N G+ TE YPY+A GTC+ A+ P I +++
Sbjct: 61 TADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQD 120
Query: 249 VPSGDEQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDG 308
VP+ E+ L +AV+ QPVS+A+ A F Y EG+F G CGT+LDH V +VG+G EDG
Sbjct: 121 VPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVVGYGVAEDG 180
Query: 309 ANYWLIKNSWGNTWGDAGYMKIVRDE----GLCGIGTRSSYPL 347
YW +KNSWG +WG+ GY+++ +D GLCGI +SYP+
Sbjct: 181 KAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPV 223
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 244 bits (624), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 134/314 (42%), Positives = 191/314 (60%), Gaps = 12/314 (3%)
Query: 38 THEQSVVEIHEKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKANKEGNRTYKLGTNQFS 97
T + ++++ WM H + Y++ EK R +IFK+NL YI++ NK+ N +Y LG N+F+
Sbjct: 13 TSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKK-NNSYWLGLNEFA 71
Query: 98 DLTNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKGAVTPIKNQKEC 157
DL+NDEF Y G + + + ++ N + ++P ++DWR KGAVTP+++Q C
Sbjct: 72 DLSNDEFNEKYVGSLIDATIEQSYDE---EFINEDIVNLPENVDWRKKGAVTPVRHQGSC 128
Query: 158 GCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGNNGCLGGSREKAFAYIIQNQGI 217
G CWAF+AVA VEGI KIR+G L++LSEQ+L+DC ++GC GG A Y+ +N GI
Sbjct: 129 GSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR-SHGCKGGYPPYALEYVAKN-GI 186
Query: 218 ATEDEYPYQAVPGTCSAAQKPAA-AKISNYEEVPSGDEQALLKAVSMQPVSIAIAAYSTE 276
+YPY+A GTC A Q K S V +E LL A++ QPVS+ + +
Sbjct: 187 HLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRP 246
Query: 277 FQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVR---- 332
FQ YK GIF G CGT++D AVT VG+G + LIKNSWG WG+ GY++I R
Sbjct: 247 FQLYKGGIFEGPCGTKVDGAVTAVGYGKSGGKGYI-LIKNSWGTAWGEKGYIRIKRAPGN 305
Query: 333 DEGLCGIGTRSSYP 346
G+CG+ S YP
Sbjct: 306 SPGVCGLYKSSYYP 319
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 107/217 (49%), Positives = 149/217 (68%), Gaps = 6/217 (2%)
Query: 135 DVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN 194
D+P S+DWR+ GAV P+KNQ CG CWAF+ VAAVEGI +I +G+LI LSEQQL+DC+T
Sbjct: 2 DLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTT- 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDE 254
N+GC GG AF +I+ N GI +E+ YPY+ G C++ I +YE VPS +E
Sbjct: 61 ANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNSTVNAPVVSIDSYENVPSHNE 120
Query: 255 QALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLI 314
Q+L KAV+ QPVS+ + A +FQ Y+ GIF G C +HA+T+VG+GT D ++W++
Sbjct: 121 QSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGTEND-KDFWIV 179
Query: 315 KNSWGNTWGDAGYMKIVRD----EGLCGIGTRSSYPL 347
KNSWG WG++GY++ R+ +G CGI +SYP+
Sbjct: 180 KNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 216
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 225 bits (574), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 112/213 (52%), Positives = 145/213 (68%), Gaps = 10/213 (4%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P +DWR KGAVTP+KNQ CG CWAF+ V+ VE I +IR+GNLI LSEQ+L+DC
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKK- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQ 255
N+GCLGG+ A+ YII N GI T+ YPY+AV G C AA K I Y VP +E
Sbjct: 60 NHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPCQAASK--VVSIDGYNGVPFCNEX 117
Query: 256 ALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIK 315
AL +AV++QP ++AI A S +FQ Y GIF+G CGT+L+H VTIVG+ ANYW+++
Sbjct: 118 ALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGY-----QANYWIVR 172
Query: 316 NSWGNTWGDAGYMKIVR--DEGLCGIGTRSSYP 346
NSWG WG+ GY++++R GLCGI YP
Sbjct: 173 NSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYP 205
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 224 bits (572), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 125/309 (40%), Positives = 181/309 (58%), Gaps = 19/309 (6%)
Query: 49 KWMAQHGRSYKDELEKEMRLKIFKENLEYIEKAN---KEGNRTYKLGTNQFSDLTNDEFR 105
KW A H R Y E+ R ++++N++ IE N +EG ++ + N F D+T++EFR
Sbjct: 10 KWKAMHNRLYGMN-EEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFR 68
Query: 106 ALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKGAVTPIKNQKECGCCWAFAA 165
+ G + P +Q + P S+DWR+KG VTP+KNQ +CG WAF+A
Sbjct: 69 QVMNGLQNRKPRKGKV------FQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSSWAFSA 122
Query: 166 VAAVEGITKIRSGNLIQLSEQQLLDCS-TNGNNGCLGGSREKAFAYIIQNQGIATEDEYP 224
A+EG ++G LI LSEQ L+DCS GN GC GG + AF Y+ N G+ +E+ YP
Sbjct: 123 TGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGLDSEESYP 182
Query: 225 YQAVPGTCSAAQKPAAAKISNYEEVPSGDEQALLKAV-SMQPVSIAIAAYSTEFQSYKEG 283
Y+A +C K + A + + ++P E+AL+KAV ++ P+S+AI A F YKEG
Sbjct: 183 YEATEESCKYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEG 241
Query: 284 I-FNGVCGTQ-LDHAVTIVGFG---TTEDGANYWLIKNSWGNTWGDAGYMKIVRD-EGLC 337
I F C ++ +DH V +VG+G T DG YWL+KNSWG WG GY+K+ +D C
Sbjct: 242 IYFEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 301
Query: 338 GIGTRSSYP 346
GI + +SYP
Sbjct: 302 GIASAASYP 310
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 224 bits (571), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 142/217 (65%), Gaps = 6/217 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
+P +DWR GAV IK+Q +CG CWAF+ +AAVEGI KI +G+LI LSEQ+L+DC T
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSA-AQKPAAAKISNYEEVPSGD 253
GC GG F +II N GI TE YPY A G C+ Q+ I YE VP +
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 254 EQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWL 313
E AL AV+ QPVS+A+ A FQ Y GIF G CGT +DHAVTIVG+G TE G +YW+
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYG-TEGGIDYWI 179
Query: 314 IKNSWGNTWGDAGYMKIVRD---EGLCGIGTRSSYPL 347
+KNSWG TWG+ GYM+I R+ G CGI ++SYP+
Sbjct: 180 VKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 224 bits (571), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 114/213 (53%), Positives = 144/213 (67%), Gaps = 10/213 (4%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P +DWR KGAVTP+KNQ +CG CWAF+ V+ VE I +IR+GNLI LSEQQL+DC+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKK- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQ 255
N+GC GG+ A+ YII N GI TE YPY+AV G C AA+K +I Y+ VP +E
Sbjct: 60 NHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGPCRAAKK--VVRIDGYKGVPHCNEN 117
Query: 256 ALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIK 315
AL KAV+ QP +AI A S +FQ YK GIF+G CGT+L+H V IVG+ +YW+++
Sbjct: 118 ALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGTKLNHGVVIVGYWK-----DYWIVR 172
Query: 316 NSWGNTWGDAGY--MKIVRDEGLCGIGTRSSYP 346
NSWG WG+ GY MK V GLCGI YP
Sbjct: 173 NSWGRYWGEQGYIRMKRVGGCGLCGIARLPYYP 205
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 224 bits (570), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 126/320 (39%), Positives = 185/320 (57%), Gaps = 19/320 (5%)
Query: 38 THEQSVVEIHEKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKAN---KEGNRTYKLGTN 94
T + S+ KW A H R Y E+ R ++++N++ IE N +EG ++ + N
Sbjct: 3 TFDHSLEAQWTKWKAMHNRLYGMN-EEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMN 61
Query: 95 QFSDLTNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKGAVTPIKNQ 154
F D+T++EFR + G++ P +Q + P S+DWR+KG VTP+KNQ
Sbjct: 62 AFGDMTSEEFRQVMNGFQNRKPRKGKV------FQEPLFYEAPRSVDWREKGYVTPVKNQ 115
Query: 155 KECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TNGNNGCLGGSREKAFAYIIQ 213
+CG WAF+A A+EG ++G LI LSEQ L+DCS GN GC GG + AF Y+
Sbjct: 116 GQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQD 175
Query: 214 NQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQALLKAV-SMQPVSIAIAA 272
N G+ +E+ YPY+A +C K + A + + ++P E+AL+KAV ++ P+S+AI A
Sbjct: 176 NGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDA 234
Query: 273 YSTEFQSYKEGI-FNGVCGTQ-LDHAVTIVGFG---TTEDGANYWLIKNSWGNTWGDAGY 327
F YKEGI F C ++ +DH V +VG+G T D YWL+KNSWG WG GY
Sbjct: 235 GHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 294
Query: 328 MKIVRD-EGLCGIGTRSSYP 346
+K+ +D CGI + +SYP
Sbjct: 295 VKMAKDRRNHCGIASAASYP 314
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 121/317 (38%), Positives = 186/317 (58%), Gaps = 15/317 (4%)
Query: 39 HEQSVVEIH-EKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKANKE---GNRTYKLGTN 94
H+ ++ H W +G+ YK++ E+ +R I+++NL+++ N E G +Y LG N
Sbjct: 3 HKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMN 62
Query: 95 QFSDLTNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKGAVTPIKNQ 154
D+T++E +L + ++PS R Y++ +P S+DWR+KG VT +K Q
Sbjct: 63 HLGDMTSEEVMSLMSSLRVPSQWQRN-----ITYKSNPNRILPDSVDWREKGCVTEVKYQ 117
Query: 155 KECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN--GNNGCLGGSREKAFAYII 212
CG WAF+AV A+E K+++G L+ LS Q L+DCST GN GC GG AF YII
Sbjct: 118 GSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYII 177
Query: 213 QNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQALLKAVSMQ-PVSIAIA 271
N+GI ++ YPY+A+ C K AA S Y E+P G E L +AV+ + PVS+ +
Sbjct: 178 DNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVD 237
Query: 272 AYSTEFQSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKI 330
A F Y+ G+ + C ++H V +VG+G +G YWL+KNSWG+ +G+ GY+++
Sbjct: 238 ARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFGEEGYIRM 296
Query: 331 VRDEG-LCGIGTRSSYP 346
R++G CGI + SYP
Sbjct: 297 ARNKGNHCGIASFPSYP 313
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 223 bits (567), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/217 (52%), Positives = 141/217 (64%), Gaps = 6/217 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
+P+ +DWR GAV IK+Q ECG CWAF+A+A VEGI KI +G LI LSEQ+L+DC T
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSA-AQKPAAAKISNYEEVPSGD 253
GC GG F +II N GI TE+ YPY A G C+ Q I YE VP +
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNN 120
Query: 254 EQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWL 313
E AL AV+ QPVS+A+ A F+ Y GIF G CGT +DHAVTIVG+G TE G +YW+
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYG-TEGGIDYWI 179
Query: 314 IKNSWGNTWGDAGYMKIVRD---EGLCGIGTRSSYPL 347
+KNSW TWG+ GYM+I+R+ G CGI T SYP+
Sbjct: 180 VKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 221 bits (562), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 110/215 (51%), Positives = 140/215 (65%), Gaps = 7/215 (3%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P+ +DWR KGAV IKNQK+CG CWAF+AVAAVE I KIR+G LI LSEQ+L+DC T
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDT-A 59
Query: 196 NNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQ 255
++GC GG AF YII N GI T+ YPY AV G+C + I+ ++ V +E
Sbjct: 60 SHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCK-PYRLRVVSINGFQRVTRNNES 118
Query: 256 ALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIK 315
AL AV+ QPVS+ + A FQ Y GIF G CGT +H V IVG+G T+ G NYW+++
Sbjct: 119 ALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYG-TQSGKNYWIVR 177
Query: 316 NSWGNTWGDAGYMKIVRD----EGLCGIGTRSSYP 346
NSWG WG+ GY+ + R+ GLCGI SYP
Sbjct: 178 NSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYP 212
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 221 bits (562), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 141/217 (64%), Gaps = 6/217 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
+P +DWR GAV IK+Q +CG WAF+ +AAVEGI KI +G+LI LSEQ+L+DC T
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSA-AQKPAAAKISNYEEVPSGD 253
GC GG F +II N GI TE YPY A G C+ Q+ I YE VP +
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 254 EQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWL 313
E AL AV+ QPVS+A+ A FQ Y GIF G CGT +DHAVTIVG+G TE G +YW+
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYG-TEGGIDYWI 179
Query: 314 IKNSWGNTWGDAGYMKIVRD---EGLCGIGTRSSYPL 347
+KNSWG TWG+ GYM+I R+ G CGI ++SYP+
Sbjct: 180 VKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 220 bits (561), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 124/316 (39%), Positives = 186/316 (58%), Gaps = 13/316 (4%)
Query: 39 HEQSVVEIH-EKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKANKE---GNRTYKLGTN 94
+ + +++ H E W H + Y +++++ R I+++NL+YI N E G TY+L N
Sbjct: 2 YPEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMN 61
Query: 95 QFSDLTNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKGAVTPIKNQ 154
D+T++E TG K+P R Y P S+D+R KG VTP+KNQ
Sbjct: 62 HLGDMTSEEVVQKMTGLKVPLSHSRSNDTL---YIPEWEGRAPDSVDYRKKGYVTPVKNQ 118
Query: 155 KECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGNNGCLGGSREKAFAYIIQN 214
+CG CWAF++V A+EG K ++G L+ LS Q L+DC + N+GC GG AF Y+ +N
Sbjct: 119 GQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-NDGCGGGYMTNAFQYVQKN 177
Query: 215 QGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQALLKAVS-MQPVSIAIAAY 273
+GI +ED YPY +C AAK Y E+P G+E+AL +AV+ + PVS+AI A
Sbjct: 178 RGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDAS 237
Query: 274 STEFQSYKEGI-FNGVCGT-QLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIV 331
T FQ Y +G+ ++ C + L+HAV VG+G + G +W+IKNSWG WG+ GY+ +
Sbjct: 238 LTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG-IQKGNKHWIIKNSWGENWGNKGYILMA 296
Query: 332 RDE-GLCGIGTRSSYP 346
R++ CGI +S+P
Sbjct: 297 RNKNNACGIANLASFP 312
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 219 bits (558), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 140/217 (64%), Gaps = 6/217 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
+P+ +DWR GAV IK+Q ECG WAF+A+A VEGI KI SG+LI LSEQ+L+DC T
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAA-QKPAAAKISNYEEVPSGD 253
GC GG F +II + GI TE+ YPY A G C A Q I YE VP +
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNN 120
Query: 254 EQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWL 313
E AL AV+ QPVS+A+ A F+ Y GIF G CGT +DHA+ IVG+G TE G +YW+
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTAVDHAIVIVGYG-TEGGVDYWI 179
Query: 314 IKNSWGNTWGDAGYMKIVRD---EGLCGIGTRSSYPL 347
+KNSW TWG+ GYM+I+R+ G CGI T SYP+
Sbjct: 180 VKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/213 (52%), Positives = 140/213 (65%), Gaps = 10/213 (4%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P +DWR KGAV P+KNQ +CG CWAF+ V VE I +IR+GNLI LSEQQL+DCS
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKK- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQ 255
N+GC GG ++A+ YII N GI TE YPY+A G C AA+K +I + VP +E
Sbjct: 60 NHGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGPCRAAKK--VVRIDGCKGVPQCNEN 117
Query: 256 ALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIK 315
AL AV+ QP +AI A S +FQ YK GIF G CGT+L+H V IVG+G +YW+++
Sbjct: 118 ALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVVIVGYGK-----DYWIVR 172
Query: 316 NSWGNTWGDAGY--MKIVRDEGLCGIGTRSSYP 346
NSWG WG+ GY MK V GLCGI YP
Sbjct: 173 NSWGRHWGEQGYTRMKRVGGCGLCGIARLPFYP 205
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/216 (50%), Positives = 142/216 (65%), Gaps = 8/216 (3%)
Query: 137 PTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGN 196
P S+DWR KGAVTP+KNQ CG WAF+ +A VEGI KI +GNL++LSEQ+L+DC + +
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKH-S 60
Query: 197 NGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAA-AKISNYEEVPSGDEQ 255
GC GG + + Y+ N G+ T YPYQA C A KP KI+ Y+ VPS E
Sbjct: 61 YGCKGGYQTTSLQYVA-NNGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXET 119
Query: 256 ALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIK 315
+ L A++ QP+S+ + A FQ YK G+F+G CGT+LDHAVT VG+GT+ DG NY +IK
Sbjct: 120 SFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTS-DGKNYIIIK 178
Query: 316 NSWGNTWGDAGYMKIVR----DEGLCGIGTRSSYPL 347
NSWG WG+ GYM++ R +G CG+ S YP
Sbjct: 179 NSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPF 214
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 140/216 (64%), Gaps = 12/216 (5%)
Query: 137 PTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGN 196
P S+DWR+KGAVTP+KNQ CG CWAF+ VA +EGI KI +G LI LSEQ+LLDC +
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERR-S 60
Query: 197 NGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAA-AKISNYEEVPSGDEQ 255
+GC GG + + Y++ N G+ TE EYPY+ G C A K I+ Y+ VP+ DE
Sbjct: 61 HGCDGGYQTTSLQYVVDN-GVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDEI 119
Query: 256 ALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIK 315
+L++A++ QPVS+ + FQ YK GI+ G CGT DHAVT VG+G T Y L+K
Sbjct: 120 SLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGYGKT-----YLLLK 174
Query: 316 NSWGNTWGDAGYMKIV----RDEGLCGIGTRSSYPL 347
NSWG WG+ GY++I R +G CG+ T S +P+
Sbjct: 175 NSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPI 210
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 207 bits (527), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 111/261 (42%), Positives = 157/261 (60%), Gaps = 15/261 (5%)
Query: 94 NQFSDLTNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKGAVTPIKN 153
N F D+T++EFR + G++ P +Q + P S+DWR+KG VTP+KN
Sbjct: 3 NAFGDMTSEEFRQVMNGFQNRKPRKGKV------FQEPLFYEAPRSVDWREKGYVTPVKN 56
Query: 154 QKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TNGNNGCLGGSREKAFAYII 212
Q +CG CWAF+A A+EG ++G LI LSEQ L+DCS GN GC GG + AF Y+
Sbjct: 57 QGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQ 116
Query: 213 QNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQALLKAV-SMQPVSIAIA 271
N G+ +E+ YPY+A +C K + A + + ++P E+AL+KAV ++ P+S+AI
Sbjct: 117 DNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAID 175
Query: 272 AYSTEFQSYKEGI-FNGVCGTQ-LDHAVTIVGFG---TTEDGANYWLIKNSWGNTWGDAG 326
A F YKEGI F C ++ +DH V +VG+G T D YWL+KNSWG WG G
Sbjct: 176 AGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGG 235
Query: 327 YMKIVRD-EGLCGIGTRSSYP 346
Y+K+ +D CGI + +SYP
Sbjct: 236 YVKMAKDRRNHCGIASAASYP 256
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 124/316 (39%), Positives = 174/316 (55%), Gaps = 16/316 (5%)
Query: 43 VVEIHEKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKAN---KEGNRTYKLGTNQFSDL 99
V E E + + RSY + E+ R +IF++ LE E+ N ++G +Y LG N F+D+
Sbjct: 18 VAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDM 77
Query: 100 TNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSM---TDVPTSLDWRDKGAVTPIKNQKE 156
T +E +A G MP+ H+ + ++L + P S DWRD+G V+P+KNQ
Sbjct: 78 TPEEMKAYTHGLIMPADLHKNGIPIKTR-EDLGLNASVRYPASFDWRDQGMVSPVKNQGS 136
Query: 157 CGCCWAFAAVAAVEGITKIRSGNLIQ--LSEQQLLDCSTNGNNGCLGGSREKAFAYIIQN 214
CG WAF++ A+E KI +G +SEQQL+DC N GC GG AF Y+ QN
Sbjct: 137 CGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNA-LGCSGGWMNDAFTYVAQN 195
Query: 215 QGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQALLKAVSMQ-PVSIAIAAY 273
GI +E YPY+ G C AA++S Y + DE L V+ + PV++A A
Sbjct: 196 GGIDSEGAYPYEMADGNCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVAFDA- 254
Query: 274 STEFQSYKEGI-FNGVCGT-QLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIV 331
F SY G+ +N C T + HAV IVG+G E+G +YWL+KNSWG+ WG GY KI
Sbjct: 255 DDPFGSYSGGVYYNPTCETNKFTHAVLIVGYG-NENGQDYWLVKNSWGDGWGLDGYFKIA 313
Query: 332 RD-EGLCGIGTRSSYP 346
R+ CGI +S P
Sbjct: 314 RNANNHCGIAGVASVP 329
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 205 bits (521), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 138/223 (61%), Gaps = 5/223 (2%)
Query: 130 NLSMTDVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLL 189
N+ +++P +DWR +G VTP+K+Q++CG CWAF+ A+EG ++G L+ LSEQ+L+
Sbjct: 1 NVLPSELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELM 60
Query: 190 DCS-TNGNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEE 248
DCS GN C GG AF Y++ + GI +ED YPY A C A KI +++
Sbjct: 61 DCSRAEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEECRAQSCEKVVKILGFKD 120
Query: 249 VPSGDEQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTT-ED 307
VP E A+ A++ PVSIAI A FQ Y EG+F+ CGT LDH V +VG+GT E
Sbjct: 121 VPRRSEAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDASCGTDLDHGVLLVGYGTDKES 180
Query: 308 GANYWLIKNSWGNTWGDAGYMKIVR---DEGLCGIGTRSSYPL 347
++W++KNSWG WG GYM + +EG CG+ +S+P+
Sbjct: 181 KKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPV 223
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 201 bits (511), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 177/307 (57%), Gaps = 27/307 (8%)
Query: 54 HGRSYKDELEKEMRLKIFKENLEYIEKAN---KEGNRTYKLGTNQFSDLTNDEFRALYTG 110
H +SY +E+ R IFK+N+ I + N ++G TY NQF D++ +EF A
Sbjct: 34 HKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEFLAYVNR 93
Query: 111 YKMPSPSHRXXXXXXFKYQNLSMTDVPT------SLDWRDKGAVTPIKNQKECGCCWAFA 164
K P H +NL M V + S+DWR AV+ +K+Q +CG W+F+
Sbjct: 94 GKAQKPKHP---------ENLRMPYVSSKKPLAASVDWRSN-AVSEVKDQGQCGSSWSFS 143
Query: 165 AVAAVEGITKIRSGNLIQLSEQQLLDCSTN-GNNGCLGGSREKAFAYIIQNQGIATEDEY 223
AVEG ++ G L LSEQ L+DCS++ GN GC GG + AF+Y I + GI +E Y
Sbjct: 144 TTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSY-IHDYGIMSESAY 202
Query: 224 PYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQALLKAVSMQ-PVSIAIAAYSTEFQSYKE 282
PY+A C + +S Y ++PSGDE +L AV PV++AI A + E Q Y
Sbjct: 203 PYEAQGDYCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDA-TDELQFYSG 261
Query: 283 GIF-NGVCG-TQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEG-LCGI 339
G+F + C + L+H V +VG+G +++G +YW++KNSWG+ WG++GY + VR+ G CGI
Sbjct: 262 GLFYDQTCNQSDLNHGVLVVGYG-SDNGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGI 320
Query: 340 GTRSSYP 346
T +SYP
Sbjct: 321 ATAASYP 327
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 142/219 (64%), Gaps = 8/219 (3%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
+P S+DWR KG VTP+KNQK+CG CWAF+A A+EG ++G L+ LSEQ L+DCS
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDE 254
GN GC GG +AF Y+ +N G+ +E+ YPY AV C + + A+ + + V G E
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDTGFTVVAPGKE 120
Query: 255 QALLKAV-SMQPVSIAIAAYSTEFQSYKEGI-FNGVCGTQ-LDHAVTIVGF---GTTEDG 308
+AL+KAV ++ P+S+A+ A + FQ YK GI F C ++ LDH V +VG+ G D
Sbjct: 121 KALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDN 180
Query: 309 ANYWLIKNSWGNTWGDAGYMKIVRDE-GLCGIGTRSSYP 346
+ YWL+KNSWG WG GY+KI +D+ CGI T +SYP
Sbjct: 181 SKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYP 219
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 141/219 (64%), Gaps = 8/219 (3%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
+P S+DWR KG VTP+KNQK+CG WAF+A A+EG ++G L+ LSEQ L+DCS
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDE 254
GN GC GG +AF Y+ +N G+ +E+ YPY AV C + + A+ + + V G E
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDTGFTVVAPGKE 120
Query: 255 QALLKAV-SMQPVSIAIAAYSTEFQSYKEGI-FNGVCGTQ-LDHAVTIVGF---GTTEDG 308
+AL+KAV ++ P+S+A+ A + FQ YK GI F C ++ LDH V +VG+ G D
Sbjct: 121 KALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDN 180
Query: 309 ANYWLIKNSWGNTWGDAGYMKIVRDE-GLCGIGTRSSYP 346
+ YWL+KNSWG WG GY+KI +D+ CGI T +SYP
Sbjct: 181 SKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYP 219
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 135/217 (62%), Gaps = 12/217 (5%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P +DWR KGAVTP+KNQ CG CWAF+AV +EGI KIR+GNL Q SEQ+LLDC
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQK-PAAAKISNYEEVPSGDE 254
+ GC GG A + Q GI + YPY+ V C + +K P AAK +V ++
Sbjct: 60 SYGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 255 QALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLI 314
ALL +++ QPVS+ + A +FQ Y+ GIF G CG ++DHAV VG+ G NY LI
Sbjct: 119 GALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILI 173
Query: 315 KNSWGNTWGDAGYMKIVRDE----GLCGIGTRSSYPL 347
KNSWG WG+ GY++I R G+CG+ T S YP+
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 135/217 (62%), Gaps = 12/217 (5%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P +DWR KGAVTP+KNQ CG CWAF+AV +EGI KIR+GNL + SEQ+LLDC
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQK-PAAAKISNYEEVPSGDE 254
+ GC GG A + Q GI + YPY+ V C + +K P AAK +V +E
Sbjct: 60 SYGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 255 QALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLI 314
ALL +++ QPVS+ + A +FQ Y+ GIF G CG ++DHAV VG+ G NY LI
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILI 173
Query: 315 KNSWGNTWGDAGYMKIVRDE----GLCGIGTRSSYPL 347
KNSWG WG+ GY++I R G+CG+ T S YP+
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 132/219 (60%), Gaps = 12/219 (5%)
Query: 137 PTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGN 196
P S+DWR KGAVT +K+Q CG CWAF A A+EGI I +G LI +SEQQ++DC T
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTX-X 60
Query: 197 NGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQA 256
GG + AF ++I N GIA++ YPY V GTC KP AA+I Y VP+ A
Sbjct: 61 XXXXGGDADDAFRWVITNGGIASDANYPYTGVDGTCD-LNKPIAARIDGYTNVPN-SSSA 118
Query: 257 LLKAVSMQPVSIAIAAYSTEFQSYK-EGIFNGVCGTQ----LDHAVTIVGFGTTEDGANY 311
LL AV+ QPVS+ I ST FQ Y GIF G + +DH V IVG+G+ A+Y
Sbjct: 119 LLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNADY 178
Query: 312 WLIKNSWGNTWGDAGYMKIVRD----EGLCGIGTRSSYP 346
W++KNSWG WG GY+ I R+ +G+C I SYP
Sbjct: 179 WIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYP 217
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 101/220 (45%), Positives = 140/220 (63%), Gaps = 9/220 (4%)
Query: 135 DVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-T 193
+ P S+DWR+KG VTP+KNQ +CG CWAF+A A+EG ++G LI LSEQ L+DCS
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 194 NGNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGD 253
GN GC GG + AF Y+ N G+ +E+ YPY+A +C K + A + + ++P
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-Q 119
Query: 254 EQALLKAV-SMQPVSIAIAAYSTEFQSYKEGI-FNGVCGTQ-LDHAVTIVGFG---TTED 307
E+AL+KAV ++ P+S+AI A F YKEGI F C ++ +DH V +VG+G T D
Sbjct: 120 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESD 179
Query: 308 GANYWLIKNSWGNTWGDAGYMKIVRD-EGLCGIGTRSSYP 346
YWL+KNSWG WG GY+K+ +D CGI + +SYP
Sbjct: 180 NNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 219
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 134/216 (62%), Gaps = 12/216 (5%)
Query: 137 PTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGN 196
P +DWR KGAVTP+KNQ CG CWAF+AV +EGI KIR+GNL Q SEQ+LLDC +
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR-S 60
Query: 197 NGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQK-PAAAKISNYEEVPSGDEQ 255
GC GG A + Q GI + YPY+ V C + +K P AAK +V ++
Sbjct: 61 YGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 256 ALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIK 315
ALL +++ QPVS+ + A +FQ Y+ GIF G CG ++DHAV VG+ G NY LIK
Sbjct: 120 ALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILIK 174
Query: 316 NSWGNTWGDAGYMKIVRDE----GLCGIGTRSSYPL 347
NSWG WG+ GY++I R G+CG+ T S YP+
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 178/312 (57%), Gaps = 16/312 (5%)
Query: 45 EIHEKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKANKE---GNRTYKLGTNQFSDLTN 101
++ +W + + Y + + + R I+++N+++I++ N G TY LG NQF+D+T
Sbjct: 3 DLWHQWKRMYNKEY-NGADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTF 61
Query: 102 DEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKGAVTPIKNQKECGCCW 161
+EF+A Y +M S ++ N + VP +DWR+ G VT +K+Q CG W
Sbjct: 62 EEFKAKYLT-EMSRASDILSHGVPYEANNRA---VPDKIDWRESGYVTEVKDQGNCGSGW 117
Query: 162 AFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN-GNNGCLGGSREKAFAYIIQNQGIATE 220
AF+ +EG I SEQQL+DCS GNNGC GG E A+ Y+ Q G+ TE
Sbjct: 118 AFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQF-GLETE 176
Query: 221 DEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQALLKAVSMQ-PVSIAIAAYSTEFQS 279
YPY AV G C ++ AK++ + V SG E L V + P ++A+ S +F
Sbjct: 177 SSYPYTAVEGQCRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVES-DFMM 235
Query: 280 YKEGIFNG-VCG-TQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEG-L 336
Y+ GI+ C +++HAV VG+G T+ G +YW++KNSWG +WG+ GY+++VR+ G +
Sbjct: 236 YRSGIYQSQTCSPLRVNHAVLAVGYG-TQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNM 294
Query: 337 CGIGTRSSYPLA 348
CGI + +S P+
Sbjct: 295 CGIASLASLPMV 306
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 192 bits (487), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 139/219 (63%), Gaps = 9/219 (4%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
P S+DWR+KG VTP+KNQ +CG CWAF+A A+EG ++G LI LSEQ L+DCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDE 254
GN GC GG + AF Y+ N G+ +E+ YPY+A +C K + A + + ++P E
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QE 119
Query: 255 QALLKAV-SMQPVSIAIAAYSTEFQSYKEGI-FNGVCGTQ-LDHAVTIVGFG---TTEDG 308
+AL+KAV ++ P+S+AI A F YKEGI F C ++ +DH V +VG+G T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 309 ANYWLIKNSWGNTWGDAGYMKIVRD-EGLCGIGTRSSYP 346
YWL+KNSWG WG GY+K+ +D CGI + +SYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 218
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 191 bits (486), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 139/219 (63%), Gaps = 9/219 (4%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
P S+DWR+KG VTP+KNQ +CG CWAF+A A+EG ++G LI LSEQ L+DCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDE 254
GN GC GG + AF Y+ N G+ +E+ YPY+A +C K + A + + ++P E
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPK-QE 119
Query: 255 QALLKAV-SMQPVSIAIAAYSTEFQSYKEGI-FNGVCGTQ-LDHAVTIVGFG---TTEDG 308
+AL+KAV ++ P+S+AI A F YKEGI F C ++ +DH V +VG+G T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 309 ANYWLIKNSWGNTWGDAGYMKIVRD-EGLCGIGTRSSYP 346
YWL+KNSWG WG GY+K+ +D CGI + +SYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 218
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 191 bits (484), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 136/216 (62%), Gaps = 8/216 (3%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P ++DWR KGAVTP+++Q CG CWAF+AVA VEGI KIR+G L++LSEQ+L+DC
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAA-AKISNYEEVPSGDE 254
++GC GG A Y+ +N GI +YPY+A GTC A Q K S V +E
Sbjct: 60 SHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNE 118
Query: 255 QALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLI 314
LL A++ QPVS+ + + FQ YK GIF G CGT++DHAVT VG+G + LI
Sbjct: 119 GNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYI-LI 177
Query: 315 KNSWGNTWGDAGYMKIVR----DEGLCGIGTRSSYP 346
KNSWG WG+ GY++I R G+CG+ S YP
Sbjct: 178 KNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYP 213
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 190 bits (483), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 134/217 (61%), Gaps = 12/217 (5%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P +DWR KGAVTP+KNQ CG WAF+AV +EGI KIR+GNL Q SEQ+LLDC
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQK-PAAAKISNYEEVPSGDE 254
+ GC GG A + Q GI + YPY+ V C + +K P AAK +V +E
Sbjct: 60 SYGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 255 QALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLI 314
ALL +++ QPVS+ + A +FQ Y+ GIF G CG ++DHAV VG+ G NY LI
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILI 173
Query: 315 KNSWGNTWGDAGYMKIVRDE----GLCGIGTRSSYPL 347
KNSWG WG+ GY++I R G+CG+ T S YP+
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 141/215 (65%), Gaps = 6/215 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
P S+D+R+KG VTP+KNQ +CG CWAF++V A+EG K ++G L+ LS Q L+DC +
Sbjct: 1 APDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQ 255
N+GC GG AF Y+ +N+GI +ED YPY +C AAK Y E+P G+E+
Sbjct: 60 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEK 119
Query: 256 ALLKAVS-MQPVSIAIAAYSTEFQSYKEGI-FNGVCGT-QLDHAVTIVGFGTTEDGANYW 312
AL +AV+ + PVS+AI A T FQ Y +G+ ++ C + L+HAV VG+G ++ G +W
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESK-GNKHW 178
Query: 313 LIKNSWGNTWGDAGYMKIVRDE-GLCGIGTRSSYP 346
+IKNSWG WG GY+K+ R++ CGI +S+P
Sbjct: 179 IIKNSWGENWGMGGYIKMARNKNNACGIANLASFP 213
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 136/216 (62%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG CWAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 195 -GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGD 253
GN GC GG AF YII N+GI ++ YPY+A+ C K AA S Y E+P G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 120
Query: 254 EQALLKAVSMQ-PVSIAIAAYSTEFQSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+ + A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 179
Query: 312 WLIKNSWGNTWGDAGYMKIVRDEG-LCGIGTRSSYP 346
WL+KNSWG+ +G+ GY+++ R++G CGI + SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 134/217 (61%), Gaps = 12/217 (5%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P +DWR KGAVTP+KNQ CG WAF+AV +EGI KIR+GNL Q SEQ+LLDC
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQK-PAAAKISNYEEVPSGDE 254
+ GC GG A + Q GI + YPY+ V C + +K P AAK +V ++
Sbjct: 60 SYGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 255 QALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLI 314
ALL +++ QPVS+ + A +FQ Y+ GIF G CG ++DHAV VG+ G NY LI
Sbjct: 119 GALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILI 173
Query: 315 KNSWGNTWGDAGYMKIVRDE----GLCGIGTRSSYPL 347
KNSWG WG+ GY++I R G+CG+ T S YP+
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/217 (47%), Positives = 134/217 (61%), Gaps = 12/217 (5%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P +DWR KGAVTP+KNQ CG WAF+AV +EGI KIR+GNL + SEQ+LLDC
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQK-PAAAKISNYEEVPSGDE 254
+ GC GG A + Q GI + YPY+ V C + +K P AAK +V +E
Sbjct: 60 SYGCNGGYPWSALQLVAQ-YGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 255 QALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLI 314
ALL +++ QPVS+ + A +FQ Y+ GIF G CG ++DHAV VG+ G NY LI
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILI 173
Query: 315 KNSWGNTWGDAGYMKIVRDE----GLCGIGTRSSYPL 347
KNSWG WG+ GY++I R G+CG+ T S YP+
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 136/216 (62%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG CWAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 195 -GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGD 253
GN GC GG AF YII N+GI ++ YPY+A+ C K AA S Y E+P G
Sbjct: 64 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 123
Query: 254 EQALLKAVSMQ-PVSIAIAAYSTEFQSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+ + A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 124 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 182
Query: 312 WLIKNSWGNTWGDAGYMKIVRDEG-LCGIGTRSSYP 346
WL+KNSWG+ +G+ GY+++ R++G CGI + SYP
Sbjct: 183 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 218
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/220 (45%), Positives = 139/220 (63%), Gaps = 9/220 (4%)
Query: 135 DVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-T 193
+ P S+DWR+KG VTP+KNQ +CG WAF+A A+EG ++G LI LSEQ L+DCS
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 194 NGNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGD 253
GN GC GG + AF Y+ N G+ +E+ YPY+A +C K + A + + ++P
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-Q 119
Query: 254 EQALLKAV-SMQPVSIAIAAYSTEFQSYKEGI-FNGVCGTQ-LDHAVTIVGFG---TTED 307
E+AL+KAV ++ P+S+AI A F YKEGI F C ++ +DH V +VG+G T D
Sbjct: 120 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESD 179
Query: 308 GANYWLIKNSWGNTWGDAGYMKIVRD-EGLCGIGTRSSYP 346
YWL+KNSWG WG GY+K+ +D CGI + +SYP
Sbjct: 180 NNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 219
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 136/216 (62%), Gaps = 8/216 (3%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P ++DWR KGAVTP+++Q CG CWAF+AVA VEGI KIR+G L++LSEQ+L+DC
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAA-AKISNYEEVPSGDE 254
++GC GG A Y+ +N GI +YPY+A GTC A Q K S V +E
Sbjct: 60 SHGCKGGYPPYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNE 118
Query: 255 QALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLI 314
LL A++ QPVS+ + + FQ YK GIF G CGT+++HAVT VG+G + LI
Sbjct: 119 GNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVEHAVTAVGYGKSGGKGYI-LI 177
Query: 315 KNSWGNTWGDAGYMKIVR----DEGLCGIGTRSSYP 346
KNSWG WG+ GY++I R G+CG+ S YP
Sbjct: 178 KNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYP 213
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 136/216 (62%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG CWAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 195 -GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGD 253
GN GC GG AF YII N+GI ++ YPY+A+ C K AA S Y E+P G
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 121
Query: 254 EQALLKAVSMQ-PVSIAIAAYSTEFQSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+ + A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 122 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 180
Query: 312 WLIKNSWGNTWGDAGYMKIVRDEG-LCGIGTRSSYP 346
WL+KNSWG+ +G+ GY+++ R++G CGI + SYP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 216
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 136/216 (62%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG CWAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 195 -GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGD 253
GN GC GG AF YII N+GI ++ YPY+A+ C K AA S Y E+P G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 120
Query: 254 EQALLKAVSMQ-PVSIAIAAYSTEFQSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+ + A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 179
Query: 312 WLIKNSWGNTWGDAGYMKIVRDEG-LCGIGTRSSYP 346
WL+KNSWG+ +G+ GY+++ R++G CGI + SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 136/216 (62%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG CWAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 195 -GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGD 253
GN GC GG AF YII N+GI ++ YPY+A+ C K AA S Y E+P G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 120
Query: 254 EQALLKAVSMQ-PVSIAIAAYSTEFQSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+ + A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 179
Query: 312 WLIKNSWGNTWGDAGYMKIVRDEG-LCGIGTRSSYP 346
WL+KNSWG+ +G+ GY+++ R++G CGI + SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 138/219 (63%), Gaps = 9/219 (4%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
P S+DWR+KG VTP+KNQ +CG WAF+A A+EG ++G LI LSEQ L+DCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDE 254
GN GC GG + AF Y+ N G+ +E+ YPY+A +C K + A + + ++P E
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QE 119
Query: 255 QALLKAV-SMQPVSIAIAAYSTEFQSYKEGI-FNGVCGTQ-LDHAVTIVGFG---TTEDG 308
+AL+KAV ++ P+S+AI A F YKEGI F C ++ +DH V +VG+G T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 309 ANYWLIKNSWGNTWGDAGYMKIVRD-EGLCGIGTRSSYP 346
YWL+KNSWG WG GY+K+ +D CGI + +SYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 218
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 136/216 (62%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG CWAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 195 -GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGD 253
GN GC GG AF YII N+GI ++ YPY+A+ C K AA S Y E+P G
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 121
Query: 254 EQALLKAVSMQ-PVSIAIAAYSTEFQSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+ + A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 122 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 180
Query: 312 WLIKNSWGNTWGDAGYMKIVRDEG-LCGIGTRSSYP 346
WL+KNSWG+ +G+ GY+++ R++G CGI + SYP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 216
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 137/215 (63%), Gaps = 6/215 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
P S+D+R KG VTP+KNQ +CG CWAF++V A+EG K ++G L+ LS Q L+DC +
Sbjct: 1 TPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQ 255
N+GC GG AF Y+ +N+GI +ED YPY +C AAK Y E+P G+E+
Sbjct: 60 NDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEK 119
Query: 256 ALLKAVS-MQPVSIAIAAYSTEFQSYKEGIF--NGVCGTQLDHAVTIVGFGTTEDGANYW 312
AL +AV+ + PVS+AI A T FQ Y +G++ L+HAV VG+G + G +W
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYG-IQKGNKHW 178
Query: 313 LIKNSWGNTWGDAGYMKIVRDE-GLCGIGTRSSYP 346
+IKNSWG +WG+ GY+ + R++ CGI +S+P
Sbjct: 179 IIKNSWGESWGNKGYILMARNKNNACGIANLASFP 213
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 188 bits (477), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 138/219 (63%), Gaps = 9/219 (4%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
P S+DWR+KG VTP+KNQ +CG WAF+A A+EG ++G LI LSEQ L+DCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDE 254
GN GC GG + AF Y+ N G+ +E+ YPY+A +C K + A + + ++P E
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPK-QE 119
Query: 255 QALLKAV-SMQPVSIAIAAYSTEFQSYKEGI-FNGVCGTQ-LDHAVTIVGFG---TTEDG 308
+AL+KAV ++ P+S+AI A F YKEGI F C ++ +DH V +VG+G T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDD 179
Query: 309 ANYWLIKNSWGNTWGDAGYMKIVRD-EGLCGIGTRSSYP 346
YWL+KNSWG WG GY+K+ +D CGI + +SYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 218
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 188 bits (477), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 138/219 (63%), Gaps = 9/219 (4%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
P S+DWR+KG VTP+KNQ +CG WAF+A A+EG ++G LI LSEQ L+DCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDE 254
GN GC GG + AF Y+ N G+ +E+ YPY+A +C K + A + + ++P E
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QE 119
Query: 255 QALLKAV-SMQPVSIAIAAYSTEFQSYKEGI-FNGVCGTQ-LDHAVTIVGFG---TTEDG 308
+AL+KAV ++ P+S+AI A F YKEGI F C ++ +DH V +VG+G T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 309 ANYWLIKNSWGNTWGDAGYMKIVRD-EGLCGIGTRSSYP 346
YWL+KNSWG WG GY+K+ +D CGI + +SYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 218
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 187 bits (475), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 135/216 (62%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG CWAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 195 -GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGD 253
GN GC GG AF YII N+GI ++ YPY+A+ C K AA Y E+P G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCRKYTELPYGR 120
Query: 254 EQALLKAVSMQ-PVSIAIAAYSTEFQSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+ + A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 179
Query: 312 WLIKNSWGNTWGDAGYMKIVRDEG-LCGIGTRSSYP 346
WL+KNSWG+ +G+ GY+++ R++G CGI + SYP
Sbjct: 180 WLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYP 215
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 187 bits (475), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 139/214 (64%), Gaps = 6/214 (2%)
Query: 137 PTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGN 196
P S+D+R KG VTP+KNQ +CG CWAF++V A+EG K ++G L+ LS Q L+DC + N
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-N 59
Query: 197 NGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQA 256
+GC GG AF Y+ +N+GI +ED YPY +C AAK Y E+P G+E+A
Sbjct: 60 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKA 119
Query: 257 LLKAVS-MQPVSIAIAAYSTEFQSYKEGI-FNGVCGT-QLDHAVTIVGFGTTEDGANYWL 313
L +AV+ + PVS+AI A T FQ Y +G+ ++ C + L+HAV VG+G + G +W+
Sbjct: 120 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG-IQKGNKHWI 178
Query: 314 IKNSWGNTWGDAGYMKIVRDE-GLCGIGTRSSYP 346
IKNSWG WG+ GY+ + R++ CGI +S+P
Sbjct: 179 IKNSWGENWGNKGYILMARNKNNACGIANLASFP 212
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 187 bits (475), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 139/215 (64%), Gaps = 6/215 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
P S+D+R KG VTP+KNQ +CG CWAF++V A+EG K ++G L+ LS Q L+DC +
Sbjct: 3 APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE- 61
Query: 196 NNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQ 255
N+GC GG AF Y+ +N+GI +ED YPY +C AAK Y E+P G+E+
Sbjct: 62 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEK 121
Query: 256 ALLKAVS-MQPVSIAIAAYSTEFQSYKEGI-FNGVCGT-QLDHAVTIVGFGTTEDGANYW 312
AL +AV+ + PVS+AI A T FQ Y +G+ ++ C + L+HAV VG+G + G +W
Sbjct: 122 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG-IQKGNKHW 180
Query: 313 LIKNSWGNTWGDAGYMKIVRDE-GLCGIGTRSSYP 346
+IKNSWG WG+ GY+ + R++ CGI +S+P
Sbjct: 181 IIKNSWGENWGNKGYILMARNKNNACGIANLASFP 215
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 187 bits (475), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 139/215 (64%), Gaps = 6/215 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
P S+D+R KG VTP+KNQ +CG CWAF++V A+EG K ++G L+ LS Q L+DC +
Sbjct: 1 APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQ 255
N+GC GG AF Y+ +N+GI +ED YPY +C AAK Y E+P G+E+
Sbjct: 60 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEK 119
Query: 256 ALLKAVS-MQPVSIAIAAYSTEFQSYKEGI-FNGVCGT-QLDHAVTIVGFGTTEDGANYW 312
AL +AV+ + PVS+AI A T FQ Y +G+ ++ C + L+HAV VG+G + G +W
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG-IQKGNKHW 178
Query: 313 LIKNSWGNTWGDAGYMKIVRDE-GLCGIGTRSSYP 346
+IKNSWG WG+ GY+ + R++ CGI +S+P
Sbjct: 179 IIKNSWGENWGNKGYILMARNKNNACGIANLASFP 213
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 135/216 (62%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG WAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 195 -GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGD 253
GN GC GG AF YII N+GI ++ YPY+A+ C K AA S Y E+P G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 120
Query: 254 EQALLKAVSMQ-PVSIAIAAYSTEFQSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+ + A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 179
Query: 312 WLIKNSWGNTWGDAGYMKIVRDEG-LCGIGTRSSYP 346
WL+KNSWG+ +G+ GY+++ R++G CGI + SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 134/216 (62%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG CWAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 195 -GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGD 253
GN GC GG AF YII N+GI ++ YPY+A+ C AA Y E+P G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSAYRAATCRKYTELPYGR 120
Query: 254 EQALLKAVSMQ-PVSIAIAAYSTEFQSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+ + A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 179
Query: 312 WLIKNSWGNTWGDAGYMKIVRDEG-LCGIGTRSSYP 346
WL+KNSWG+ +G+ GY+++ R++G CGI + SYP
Sbjct: 180 WLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYP 215
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 135/216 (62%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG WAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 195 -GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGD 253
GN GC GG AF YII N+GI ++ YPY+A+ C K AA S Y E+P G
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 121
Query: 254 EQALLKAVSMQ-PVSIAIAAYSTEFQSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+ + A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 122 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 180
Query: 312 WLIKNSWGNTWGDAGYMKIVRDEG-LCGIGTRSSYP 346
WL+KNSWG+ +G+ GY+++ R++G CGI + SYP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 216
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 185 bits (469), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 135/216 (62%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG WAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 195 -GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGD 253
GN GC GG AF YII N+GI ++ YPY+A+ C K AA S Y E+P G
Sbjct: 63 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 122
Query: 254 EQALLKAVSMQ-PVSIAIAAYSTEFQSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+ + A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 123 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 181
Query: 312 WLIKNSWGNTWGDAGYMKIVRDEG-LCGIGTRSSYP 346
WL+KNSWG+ +G+ GY+++ R++G CGI + SYP
Sbjct: 182 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 217
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 184 bits (468), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 135/216 (62%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN- 194
+P S+DWR+KG VT +K Q CG WAF+AV A+E K+++G L+ LS Q L+DCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 195 -GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGD 253
GN GC GG AF YII N+GI ++ YPY+A+ C K AA S Y E+P G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLKCQYDSKYRAATCSKYTELPYGR 120
Query: 254 EQALLKAVSMQ-PVSIAIAAYSTEFQSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+ + A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 179
Query: 312 WLIKNSWGNTWGDAGYMKIVRDEG-LCGIGTRSSYP 346
WL+KNSWG+ +G+ GY+++ R++G CGI + SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 96/212 (45%), Positives = 138/212 (65%), Gaps = 6/212 (2%)
Query: 139 SLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGNNG 198
S+D+R KG VTP+KNQ +CG CWAF++V A+EG K ++G L+ LS Q L+DC + N+G
Sbjct: 2 SVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE-NDG 60
Query: 199 CLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQALL 258
C GG AF Y+ +N+GI +ED YPY +C AAK Y E+P G+E+AL
Sbjct: 61 CGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALK 120
Query: 259 KAVS-MQPVSIAIAAYSTEFQSYKEGI-FNGVCGT-QLDHAVTIVGFGTTEDGANYWLIK 315
+AV+ + PVS+AI A T FQ Y +G+ ++ C + L+HAV VG+G + G +W+IK
Sbjct: 121 RAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG-IQKGNKHWIIK 179
Query: 316 NSWGNTWGDAGYMKIVRDE-GLCGIGTRSSYP 346
NSWG WG+ GY+ + R++ CGI +S+P
Sbjct: 180 NSWGENWGNKGYILMARNKNNACGIANLASFP 211
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 184 bits (466), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 97/215 (45%), Positives = 138/215 (64%), Gaps = 6/215 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
P S+D+R KG VTP+KNQ +CG CWAF++V A+EG K +G L+ L+ Q L+DC +
Sbjct: 1 APDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSE- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQ 255
N+GC GG AF Y+ +N+GI +ED YPY +C AAK Y E+P G+E
Sbjct: 60 NDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEA 119
Query: 256 ALLKAV-SMQPVSIAIAAYSTEFQSYKEGI-FNGVCGTQ-LDHAVTIVGFGTTEDGANYW 312
AL +AV ++ PVS+AI A T FQ Y G+ ++ C + L+HAV VG+G + G +W
Sbjct: 120 ALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYG-IQAGNKHW 178
Query: 313 LIKNSWGNTWGDAGYMKIVRDE-GLCGIGTRSSYP 346
+IKNSWG +WG+AGY+ + R++ CGI +S+P
Sbjct: 179 IIKNSWGESWGNAGYILMARNKNNACGIANLASFP 213
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 95/215 (44%), Positives = 136/215 (63%), Gaps = 6/215 (2%)
Query: 137 PTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TNG 195
P S+DWR+KG VTP+KNQ +CG +AF+A A+EG ++G LI LSEQ L+DCS G
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 196 NNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQ 255
N GC GG + AF Y+ N G+ +E+ YPY+A +C K + A + ++P E+
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDVGFVDIPK-QEK 120
Query: 256 ALLKAV-SMQPVSIAIAAYSTEFQSYKEGIF--NGVCGTQLDHAVTIVGFGTTEDGANYW 312
AL+KAV ++ P+S+AI A F YKEGI+ + + L+HA+ +VG+G + YW
Sbjct: 121 ALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISNNQKYW 180
Query: 313 LIKNSWGNTWGDAGYMKIVRD-EGLCGIGTRSSYP 346
L+KNSWG WG GY+K+ +D CGI + +SYP
Sbjct: 181 LVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 215
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 136/216 (62%), Gaps = 12/216 (5%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+PTS+DWR KGAVTP++NQ CG CW F++VAAVEGI KI +G L+ LSEQ+LLDC
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERR- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQ-KPAAAKISNYEEVPSGDE 254
+ GC GG A Y + N GI YPY+ V C A+Q K K VP +E
Sbjct: 60 SYGCRGGFPLYALQY-VANSGIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNE 118
Query: 255 QALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLI 314
QAL++ +++QPVSI + A FQ+Y+ GIF G CGT +DHAV VG+G +Y LI
Sbjct: 119 QALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVAAVGYGN-----DYILI 173
Query: 315 KNSWGNTWGDAGYMKIVRD----EGLCGIGTRSSYP 346
KNSWG WG+ GY++I R +G CG+ + S +P
Sbjct: 174 KNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFP 209
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 182 bits (462), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 137/217 (63%), Gaps = 8/217 (3%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
+P S+DWR KGAVTP+K+Q C CWAF+ VA VEGI KI++GNL++LSEQ+L+DC
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQ- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAA-AKISNYEEVPSGDE 254
+ GC G + + Y+ QN GI +YPY A TC A Q K + V S +E
Sbjct: 60 SYGCNRGYQSTSLQYVAQN-GIHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNNE 118
Query: 255 QALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLI 314
+LL A++ QPVS+ + + +FQ+YK GIF G CGT++DHAVT VG+G + LI
Sbjct: 119 GSLLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCGTKVDHAVTAVGYGKSGGKGYI-LI 177
Query: 315 KNSWGNTWGDAGYMKIVR----DEGLCGIGTRSSYPL 347
KNSWG WG+ GY++I R G+CG+ S YP+
Sbjct: 178 KNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPI 214
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 172 bits (435), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 130/218 (59%), Gaps = 9/218 (4%)
Query: 137 PTSLDWRDKGA-VTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
P S+DWR KG V+P+KNQ CG CW F+ A+E I +G ++ L+EQQL+DC+ N
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 196 NN-GCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDE 254
NN GC GG +AF YI N+GI ED YPY+ C A A + + + DE
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDE 121
Query: 255 QALLKAVSM-QPVSIAIAAYSTEFQSYKEGIFNGV----CGTQLDHAVTIVGFGTTEDGA 309
+A+++AV++ PVS A + +F Y++GI++ +++HAV VG+G E+G
Sbjct: 122 EAMVEAVALYNPVSFAFEV-TNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYG-EENGI 179
Query: 310 NYWLIKNSWGNTWGDAGYMKIVRDEGLCGIGTRSSYPL 347
YW++KNSWG WG GY I R + +CG+ +SYP+
Sbjct: 180 PYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPI 217
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 130/224 (58%), Gaps = 18/224 (8%)
Query: 138 TSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGNN 197
+ DWR VTP+K+QK CG CWAF+++ +VE IR LI LSEQ+L+DCS N
Sbjct: 20 AAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK-NY 78
Query: 198 GCLGGSREKAFAYIIQNQGIATEDEYPYQA-VPGTCSAAQKPAAAKISNYEEVPSGDEQA 256
GC GG AF +I+ GI + +YPY + P C+ + I NY VP +
Sbjct: 79 GCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKE 138
Query: 257 LLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTE---------D 307
L+ + P+SI++A S +F YKEGIF+G CG QL+HAV +VGFG E +
Sbjct: 139 ALRFLG--PISISVAV-SDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGE 195
Query: 308 GANYWLIKNSWGNTWGDAGYMKIVRDE-GL---CGIGTRSSYPL 347
Y++IKNSWG WG+ G++ I DE GL CG+GT + PL
Sbjct: 196 KHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 239
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 166 bits (419), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 129/224 (57%), Gaps = 18/224 (8%)
Query: 138 TSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGNN 197
+ DWR VTP+K+QK CG WAF+++ +VE IR LI LSEQ+L+DCS N
Sbjct: 19 AAYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFK-NY 77
Query: 198 GCLGGSREKAFAYIIQNQGIATEDEYPYQA-VPGTCSAAQKPAAAKISNYEEVPSGDEQA 256
GC GG AF +I+ GI + +YPY + P C+ + I NY VP +
Sbjct: 78 GCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKE 137
Query: 257 LLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTE---------D 307
L+ + P+SI++A S +F YKEGIF+G CG QL+HAV +VGFG E +
Sbjct: 138 ALRFLG--PISISVAV-SDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGE 194
Query: 308 GANYWLIKNSWGNTWGDAGYMKIVRDE-GL---CGIGTRSSYPL 347
Y++IKNSWG WG+ G++ I DE GL CG+GT + PL
Sbjct: 195 KHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 238
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 134/227 (59%), Gaps = 18/227 (7%)
Query: 135 DVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN 194
D P S DW KG +T +K Q +CG WAF+A A+E I +GNL+ LSEQ+L+DC +
Sbjct: 1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDC-VD 59
Query: 195 GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNY-------E 247
+ GC G ++F +++++ GIA+E +YPY+A G C A + I NY E
Sbjct: 60 ESEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCKANEIQDKVTIDNYGVQILSNE 119
Query: 248 EVPSGDEQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGV-CGTQ--LDHAVTIVGFGT 304
S E +L V QP+S++I A +F Y GI++G C + ++H V IVG+G
Sbjct: 120 STESEAESSLQSFVLEQPISVSIDA--KDFHFYSGGIYDGGNCSSPYGINHFVLIVGYG- 176
Query: 305 TEDGANYWLIKNSWGNTWGDAGYMKIVRDE----GLCGIGTRSSYPL 347
+EDG +YW+ KNSWG WG GY++I R+ G+CG+ +SYP+
Sbjct: 177 SEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPI 223
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 127/223 (56%), Gaps = 18/223 (8%)
Query: 139 SLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGNNG 198
+ DWR G VTP+K+Q CG CWAF++V +VE IR L SEQ+L+DCS NNG
Sbjct: 23 AYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVK-NNG 81
Query: 199 CLGGSREKAFAYIIQNQGIATEDEYPYQA-VPGTCSAAQKPAAAKISNYEEVPSGDEQAL 257
C GG AF +I G+ ++D+YPY + +P TC+ + I +Y +P +
Sbjct: 82 CYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNLKRCNERYTIKSYVSIPDDKFKEA 141
Query: 258 LKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGT----TEDGAN--- 310
L+ + P+SI+IAA S +F Y+ G ++G CG +HAV +VG+G ED
Sbjct: 142 LRY--LGPISISIAA-SDDFAFYRGGFYDGECGAAPNHAVILVGYGMKDIYNEDTGRMEK 198
Query: 311 --YWLIKNSWGNTWGDAGYMKIVRDEG----LCGIGTRSSYPL 347
Y++IKNSWG+ WG+ GY+ + DE C IGT + PL
Sbjct: 199 FYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPL 241
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 150 bits (378), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 111/172 (64%), Gaps = 5/172 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
P S+DWR+KG VTP+KNQ +CG CWAF+A A+EG ++G LI LSEQ L+DCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDE 254
GN GC GG + AF Y+ N G+ +E+ YPY+A +C K + A + + ++P E
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QE 119
Query: 255 QALLKAV-SMQPVSIAIAAYSTEFQSYKEGI-FNGVCGTQ-LDHAVTIVGFG 303
+AL+KAV ++ P+S+AI A F YKEGI F C ++ +DH V +VG+G
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 110/172 (63%), Gaps = 5/172 (2%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCS-TN 194
P S+DWR+KG VTP+KNQ +CG WAF+A A+EG ++G LI LSEQ L+DCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 195 GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDE 254
GN GC GG + AF Y+ N G+ +E+ YPY+A +C K + A + + ++P E
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QE 119
Query: 255 QALLKAV-SMQPVSIAIAAYSTEFQSYKEGI-FNGVCGTQ-LDHAVTIVGFG 303
+AL+KAV ++ P+S+AI A F YKEGI F C ++ +DH V +VG+G
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 144 bits (364), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 120/209 (57%), Gaps = 15/209 (7%)
Query: 137 PTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGN 196
P ++DWR+KGAVTP+K+Q +CG CWAF+ + +EG ++ L+ LSEQ L+ C T +
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTI-D 60
Query: 197 NGCLGGSREKAFAYIIQNQG--IATEDEYPYQAVPG---TCSAAQKPAAAKISNYEEVPS 251
GC GG + AF +I+ + G + TE YPY + G C A I+++ ++P
Sbjct: 61 FGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQ 120
Query: 252 GDEQALLKAVSMQ-PVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGAN 310
DE A+ ++ P++IA+ A T F Y GI QLDH V +VG+ D +N
Sbjct: 121 -DEDAIAAYLAENGPLAIAVDA--TSFMDYNGGILTSCTSEQLDHGVLLVGY---NDASN 174
Query: 311 --YWLIKNSWGNTWGDAGYMKIVRDEGLC 337
YW+IKNSW N WG+ GY++I + C
Sbjct: 175 PPYWIIKNSWSNMWGEDGYIRIEKGTNQC 203
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 138 bits (347), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 113/208 (54%), Gaps = 13/208 (6%)
Query: 137 PTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGN 196
P ++DWR +GAVT +K+Q +CG CWAF+A+ VE + L L+EQ L+ C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-D 60
Query: 197 NGCLGGSREKAFAYIIQ--NQGIATEDEYPYQAVPGT---CSAAQKPAAAKISNYEEVPS 251
+GC GG AF +I+Q N + TED YPY + G C+ + A I+ + E+P
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 252 GDEQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGAN- 310
+ Q PV++A+ A S + +Y G+ QLDH V +VG+ DGA
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDASS--WMTYTGGVMTSCVSEQLDHGVLLVGY---NDGAAV 175
Query: 311 -YWLIKNSWGNTWGDAGYMKIVRDEGLC 337
YW+IKNSW WG+ GY++I + C
Sbjct: 176 PYWIIKNSWTTQWGEEGYIRIAKGSNQC 203
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 138 bits (347), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 113/208 (54%), Gaps = 13/208 (6%)
Query: 137 PTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGN 196
P ++DWR +GAVT +K+Q +CG CWAF+A+ VE + L L+EQ L+ C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-D 60
Query: 197 NGCLGGSREKAFAYIIQ--NQGIATEDEYPYQAVPGT---CSAAQKPAAAKISNYEEVPS 251
+GC GG AF +I+Q N + TED YPY + G C+ + A I+ + E+P
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 252 GDEQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGAN- 310
+ Q PV++A+ A S + +Y G+ QLDH V +VG+ DGA
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDASS--WMTYTGGVMTSCVSEQLDHGVLLVGY---NDGAAV 175
Query: 311 -YWLIKNSWGNTWGDAGYMKIVRDEGLC 337
YW+IKNSW WG+ GY++I + C
Sbjct: 176 PYWIIKNSWTTQWGEEGYIRIAKGSNQC 203
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 111/206 (53%), Gaps = 9/206 (4%)
Query: 137 PTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGN 196
P ++DWR +GAVT +K+Q +CG CWAF+A+ VE + L LSEQ L+ C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-D 60
Query: 197 NGCLGGSREKAFAYIIQ--NQGIATEDEYPYQAVPGT---CSAAQKPAAAKISNYEEVPS 251
+GC GG AF +I+Q N + TED YPY + G C+ + A I+ + E+P
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 252 GDEQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANY 311
+ Q PV++A+ A S + +Y G+ QLDH V +VG+ + Y
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDASS--WMTYTGGVMTSCVSEQLDHGVLLVGYNDSA-AVPY 177
Query: 312 WLIKNSWGNTWGDAGYMKIVRDEGLC 337
W+IKNSW WG+ GY++I + C
Sbjct: 178 WIIKNSWTTQWGEEGYIRIAKGSNQC 203
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 110/206 (53%), Gaps = 9/206 (4%)
Query: 137 PTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGN 196
P ++DWR +GAVT +K+Q +CG CWAF+A+ VE + L LSEQ L+ C +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-D 60
Query: 197 NGCLGGSREKAFAYIIQ--NQGIATEDEYPYQAVPGT---CSAAQKPAAAKISNYEEVPS 251
+GC GG AF +I+Q N + TED YPY + G C+ + A I+ + E+P
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 252 GDEQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANY 311
+ Q PV++A+ A S + +Y G+ LDH V +VG+ + Y
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDASS--WMTYTGGVMTSCVSEALDHGVLLVGYNDSA-AVPY 177
Query: 312 WLIKNSWGNTWGDAGYMKIVRDEGLC 337
W+IKNSW WG+ GY++I + C
Sbjct: 178 WIIKNSWTTQWGEEGYIRIAKGSNQC 203
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 82/213 (38%), Positives = 115/213 (53%), Gaps = 8/213 (3%)
Query: 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNG 195
P DWR KGAVT +K+Q CG CWAF+ VEG + G L+ LSEQ+LLDC
Sbjct: 1 APPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKM- 59
Query: 196 NNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQ 255
+ C+GG A++ I G+ TED+Y YQ +C + + A I + E+ +++
Sbjct: 60 DKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVELSQNEQK 119
Query: 256 ALLKAVSMQPVSIAIAAYSTEFQSYKEGI---FNGVCGTQL-DHAVTIVGFGTTEDGANY 311
P+S+AI A+ +F Y+ GI +C L DHAV +VG+G D +
Sbjct: 120 LAAWLAKRGPISVAINAFGMQF--YRHGISRPLRPLCSPWLIDHAVLLVGYGQRSD-VPF 176
Query: 312 WLIKNSWGNTWGDAGYMKIVRDEGLCGIGTRSS 344
W IKNSWG WG+ GY + R G CG+ T +S
Sbjct: 177 WAIKNSWGTDWGEKGYYYLHRGSGACGVNTMAS 209
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 115/206 (55%), Gaps = 18/206 (8%)
Query: 131 LSMTDVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLD 190
++ +VP+ LD R VTPI+ Q CG CWAF+ VAA E + LSEQ+L+D
Sbjct: 6 INSVNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVD 65
Query: 191 CSTNGNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAK--ISNYEE 248
C++ +GC G + + YI QN G+ E YPY A C ++P + ISNY +
Sbjct: 66 CAS--QHGCHGDTIPRGIEYIQQN-GVVEERSYPYVAREQRC---RRPNSQHYGISNYCQ 119
Query: 249 VPSGDEQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLD-------HAVTIVG 301
+ D + + +A++ +IA+ + ++++ ++G Q D HAV IVG
Sbjct: 120 IYPPDVKQIREALTQTHTAIAVIIGIKDLRAFQH--YDGRTIIQHDNGYQPNYHAVNIVG 177
Query: 302 FGTTEDGANYWLIKNSWGNTWGDAGY 327
+G+T+ G +YW+++NSW TWGD+GY
Sbjct: 178 YGSTQ-GDDYWIVRNSWDTTWGDSGY 202
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 139/296 (46%), Gaps = 27/296 (9%)
Query: 42 SVVEIHEKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKANKEGNRTYKLGTNQFSDLTN 101
S ++ E++ +SY ++E K F E+++Y++ N SDL+
Sbjct: 3 SSIKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG--------AINHLSDLSL 54
Query: 102 DEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMT-DVPTSLDWRDKGAVTPIKNQKECGCC 160
DEF+ + + + S+ + P +D R VTPI+ Q CG
Sbjct: 55 DEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSA 114
Query: 161 WAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGNNGCLGGSREKAFAYIIQNQGIATE 220
WAF+ VAA E + L+EQ+L+DC++ +GC G + + Y IQ+ G+ E
Sbjct: 115 WAFSGVAATESAYLAYRDQSLDLAEQELVDCAS--QHGCHGDTIPRGIEY-IQHNGVVQE 171
Query: 221 DEYPYQAVPGTCSAAQKPAAAK--ISNYEEVPSGDEQALLKAVSMQPVSIAIAAYSTEFQ 278
Y Y A +C ++P A + ISNY ++ + + +A++ +IA+ +
Sbjct: 172 SYYRYVAREQSC---RRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLD 228
Query: 279 SYKEGIFNGVCGTQLD-------HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGY 327
+++ ++G Q D HAV IVG+ + G +YW+++NSW WGD GY
Sbjct: 229 AFRH--YDGRTIIQRDNGYQPNYHAVNIVGYSNAQ-GVDYWIVRNSWDTNWGDNGY 281
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 115/228 (50%), Gaps = 32/228 (14%)
Query: 136 VPTSLDWRDKGA---VTPIKNQKECGCCWAFAAVAAVEGITKIRSGN--LIQLSEQQLLD 190
+PTS DWR+ V+P++NQ CG C++FA++ +E +I + N LS Q+++
Sbjct: 207 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 266
Query: 191 CSTNGNNGCLGGSREKAFAYII-----QNQGIATEDEYPYQAVPGTCSAAQKPAAAKISN 245
CS GC GG F Y+I Q+ G+ E +PY C + S
Sbjct: 267 CSQYAQ-GCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSE 320
Query: 246 YEEVPS---GDEQALLKA--VSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQ-------- 292
Y V G +AL+K V P+++A Y +F YK+GI++ G +
Sbjct: 321 YHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYD-DFLHYKKGIYHHT-GLRDPFNPFEL 378
Query: 293 LDHAVTIVGFGT-TEDGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGI 339
+HAV +VG+GT + G +YW++KNSWG WG+ GY +I R C I
Sbjct: 379 TNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAI 426
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 105/202 (51%), Gaps = 18/202 (8%)
Query: 135 DVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN 194
+ P +D R VTPI+ Q CG CWAF+ VAA E + L+EQ+L+DC++
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCAS- 67
Query: 195 GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAK--ISNYEEVPSG 252
+GC G + + Y IQ+ G+ E Y Y A +C ++P A + ISNY ++
Sbjct: 68 -QHGCHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSC---RRPNAQRFGISNYCQIYPP 122
Query: 253 DEQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLD-------HAVTIVGFGTT 305
+ + +A++ +IA+ + +++ ++G Q D HAV IVG+
Sbjct: 123 NVNKIREALAQTHSAIAVIIGIKDLDAFRH--YDGRTIIQRDNGYQPNYHAVNIVGYSNA 180
Query: 306 EDGANYWLIKNSWGNTWGDAGY 327
+ G +YW+++NSW WGD GY
Sbjct: 181 Q-GVDYWIVRNSWDTNWGDNGY 201
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 105/202 (51%), Gaps = 18/202 (8%)
Query: 135 DVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN 194
+ P +D R VTPI+ Q CG CWAF+ VAA E + L+EQ+L+DC++
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCAS- 67
Query: 195 GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAK--ISNYEEVPSG 252
+GC G + + Y IQ+ G+ E Y Y A +C ++P A + ISNY ++
Sbjct: 68 -QHGCHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSC---RRPNAQRFGISNYCQIYPP 122
Query: 253 DEQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLD-------HAVTIVGFGTT 305
+ + +A++ +IA+ + +++ ++G Q D HAV IVG+
Sbjct: 123 NANKIREALAQTHSAIAVIIGIKDLDAFRH--YDGRTIIQRDNGYQPNYHAVNIVGYSNA 180
Query: 306 EDGANYWLIKNSWGNTWGDAGY 327
+ G +YW+++NSW WGD GY
Sbjct: 181 Q-GVDYWIVRNSWDTNWGDNGY 201
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 104/202 (51%), Gaps = 18/202 (8%)
Query: 135 DVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN 194
+ P +D R VTPI+ Q CG WAF+ VAA E + L+EQ+L+DC++
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCAS- 67
Query: 195 GNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAK--ISNYEEVPSG 252
+GC G + + Y IQ+ G+ E Y Y A +C ++P A + ISNY ++
Sbjct: 68 -QHGCHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSC---RRPNAQRFGISNYCQIYPP 122
Query: 253 DEQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLD-------HAVTIVGFGTT 305
+ + +A++ +IA+ + +++ ++G Q D HAV IVG+
Sbjct: 123 NANKIREALAQTHSAIAVIIGIKDLDAFRH--YDGRTIIQRDNGYQPNYHAVNIVGYSNA 180
Query: 306 EDGANYWLIKNSWGNTWGDAGY 327
+ G +YW+++NSW WGD GY
Sbjct: 181 Q-GVDYWIVRNSWDTNWGDNGY 201
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 30/230 (13%)
Query: 133 MTDVPTSLDWRD-KGA--VTPIKNQKECGCCWAFAAVAAVEGITKIRSGN--LIQLSEQQ 187
+ +P S DWR+ +G V+P++NQ+ CG C++FA++ +E +I + N LS Q+
Sbjct: 203 ILSLPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQE 262
Query: 188 LLDCSTNGNNGCLGGSREKAFAYII-----QNQGIATEDEYPYQAVPGTCSAAQ---KPA 239
++ CS GC GG F Y+I Q+ G+ E+ +PY A C + +
Sbjct: 263 VVSCSPYAQ-GCDGG-----FPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKENCLRYY 316
Query: 240 AAKISNYEEVPSGDEQALLKA--VSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQ----- 292
+++ G +AL+K V P+++A + +F Y GI++ +
Sbjct: 317 SSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHD-DFLHYHSGIYHHTGLSDPFNPF 375
Query: 293 --LDHAVTIVGFGTTE-DGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGI 339
+HAV +VG+G G +YW++KNSWG+ WG++GY +I R C I
Sbjct: 376 ELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAI 425
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 108/247 (43%), Gaps = 44/247 (17%)
Query: 134 TDVPTSLDWRDK----GAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNL--IQLSEQQ 187
++P+S D R K ++ I++Q CG CWAF AV A+ + I+SG ++LS
Sbjct: 1 VEIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVD 60
Query: 188 LLDCSTNGNNGCLGGSREKAFAYIIQNQGIATE---------DEYPYQAVPGTCSAAQKP 238
LL C + GC GG A+ Y ++ +GI T + YP+ P
Sbjct: 61 LLSCCESCGLGCEGGILGPAWDYWVK-EGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPP 119
Query: 239 AAAKISNYEEVP------------------------SGDEQALLKAV-SMQPVSIAIAAY 273
+KI DE+A+ K + PV Y
Sbjct: 120 CGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVY 179
Query: 274 STEFQSYKEGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVR 332
+F +YK GI+ + G L HA+ I+G+G E+ A YWLI NSW WG+ GY +IVR
Sbjct: 180 E-DFLNYKSGIYKHITGETLGGHAIRIIGWGV-ENKAPYWLIANSWNEDWGENGYFRIVR 237
Query: 333 DEGLCGI 339
C I
Sbjct: 238 GRDECSI 244
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 128/305 (41%), Gaps = 53/305 (17%)
Query: 76 EYIEKANKEGNRTYKLGTNQFSDLTNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTD 135
E + NK N T++ G N ++ + R T P P R K
Sbjct: 13 ELVNYVNKR-NTTWQAGHNFYNVDMSYLKRLCGTFLGGPKPPQRVMFTEDLK-------- 63
Query: 136 VPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAVEGITKIRSGNLIQL---SEQQL 188
+P S D R++ P I++Q CG CWAF AV A+ I + + + +E L
Sbjct: 64 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 123
Query: 189 LDCSTNGNNGCLGGSREKAFAYIIQNQGIATEDEY-------PYQAVP---------GTC 232
C + +GC GG +A+ + + +G+ + Y PY P C
Sbjct: 124 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 182
Query: 233 SA-AQKPAAAKIS----------------NYEEVPSGDEQALLKAVSMQPVSIAIAAYST 275
+ P +KI N V + ++ + + PV A + YS
Sbjct: 183 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYS- 241
Query: 276 EFQSYKEGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDE 334
+F YK G++ V G + HA+ I+G+G E+G YWL+ NSW WGD G+ KI+R +
Sbjct: 242 DFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQ 300
Query: 335 GLCGI 339
CGI
Sbjct: 301 DHCGI 305
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 107/246 (43%), Gaps = 36/246 (14%)
Query: 136 VPTSLD----WRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSG-NLIQLSEQQLLD 190
+P+S D W + + I +Q CG CWA AA +A+ G + +S LL
Sbjct: 94 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 153
Query: 191 CSTNGNNGCLGGSREKAFAYIIQNQGIATEDEYPY------------QAVPGT------- 231
C ++ +GC GG ++A+AY + G+ ++ PY P
Sbjct: 154 CCSDCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDT 212
Query: 232 --CSAAQKPAAAKISNYEEVPS----GDEQALLKAVSMQPVSIAIAAYSTEFQSYKEGIF 285
C+ + NY S G++ + + P +A Y +F +Y G++
Sbjct: 213 PKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYE-DFIAYNSGVY 271
Query: 286 NGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGI--GTR 342
+ V G L HAV +VG+GT+ +G YW I NSW WG GY I R CGI G
Sbjct: 272 HHVSGQYLGGHAVRLVGWGTS-NGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGS 330
Query: 343 SSYPLA 348
+ PLA
Sbjct: 331 AGIPLA 336
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 109/245 (44%), Gaps = 44/245 (17%)
Query: 136 VPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAVEGITKIRSGNLIQL---SEQQL 188
+P S D R++ P I++Q CG CWAF AV A+ I + + + +E L
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 189 LDCSTNGNNGCLGGSREKAFAYIIQNQGIATEDEY-------PYQAVP---------GTC 232
C + +GC GG +A+ + + +G+ + Y PY P C
Sbjct: 62 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 120
Query: 233 SA-AQKPAAAKIS----------------NYEEVPSGDEQALLKAVSMQPVSIAIAAYST 275
+ P +KI N V + ++ + + PV A + YS
Sbjct: 121 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYS- 179
Query: 276 EFQSYKEGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDE 334
+F YK G++ V G + HA+ I+G+G E+G YWL+ NSW WGD G+ KI+R +
Sbjct: 180 DFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQ 238
Query: 335 GLCGI 339
CGI
Sbjct: 239 DHCGI 243
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 109/245 (44%), Gaps = 44/245 (17%)
Query: 136 VPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAVEGITKIRSGNLIQL---SEQQL 188
+P S D R++ P I++Q CG CWAF AV A+ I + + + +E L
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 189 LDCSTNGNNGCLGGSREKAFAYIIQNQGIATEDEY-------PYQAVP---------GTC 232
C + +GC GG +A+ + + +G+ + Y PY P C
Sbjct: 63 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 121
Query: 233 SA-AQKPAAAKIS----------------NYEEVPSGDEQALLKAVSMQPVSIAIAAYST 275
+ P +KI N V + ++ + + PV A + YS
Sbjct: 122 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYS- 180
Query: 276 EFQSYKEGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDE 334
+F YK G++ V G + HA+ I+G+G E+G YWL+ NSW WGD G+ KI+R +
Sbjct: 181 DFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQ 239
Query: 335 GLCGI 339
CGI
Sbjct: 240 DHCGI 244
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 109/245 (44%), Gaps = 44/245 (17%)
Query: 136 VPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAVEGITKIRSGNLIQL---SEQQL 188
+P S D R++ P I++Q CG CWAF AV A+ I + + + +E L
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 189 LDCSTNGNNGCLGGSREKAFAYIIQNQGIATEDEY-------PYQAVP---------GTC 232
C + +GC GG +A+ + + +G+ + Y PY P C
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 119
Query: 233 SA-AQKPAAAKIS----------------NYEEVPSGDEQALLKAVSMQPVSIAIAAYST 275
+ P +KI N V + ++ + + PV A + YS
Sbjct: 120 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYS- 178
Query: 276 EFQSYKEGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDE 334
+F YK G++ V G + HA+ I+G+G E+G YWL+ NSW WGD G+ KI+R +
Sbjct: 179 DFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQ 237
Query: 335 GLCGI 339
CGI
Sbjct: 238 DHCGI 242
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 107/246 (43%), Gaps = 36/246 (14%)
Query: 136 VPTSLD----WRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSG-NLIQLSEQQLLD 190
+P+S D W + + I +Q CG CWA AA +A+ G + +S LL
Sbjct: 71 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 130
Query: 191 CSTNGNNGCLGGSREKAFAYIIQNQGIATEDEYPY------------QAVPGT------- 231
C ++ +GC GG ++A+AY + G+ ++ PY P
Sbjct: 131 CCSDCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDT 189
Query: 232 --CSAAQKPAAAKISNYEEVPS----GDEQALLKAVSMQPVSIAIAAYSTEFQSYKEGIF 285
C+ + NY S G++ + + P +A Y +F +Y G++
Sbjct: 190 PKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYE-DFIAYNSGVY 248
Query: 286 NGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGI--GTR 342
+ V G L HAV +VG+GT+ +G YW I NSW WG GY I R CGI G
Sbjct: 249 HHVSGQYLGGHAVRLVGWGTS-NGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGS 307
Query: 343 SSYPLA 348
+ PLA
Sbjct: 308 AGIPLA 313
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 106/246 (43%), Gaps = 36/246 (14%)
Query: 136 VPTSLD----WRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSG-NLIQLSEQQLLD 190
+P+S D W + + I +Q CG CWA AA +A+ G + +S LL
Sbjct: 72 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 131
Query: 191 CSTNGNNGCLGGSREKAFAYIIQNQGIATEDEYPY------------QAVPGT------- 231
C ++ +GC GG ++A+AY + G+ ++ PY P
Sbjct: 132 CCSDCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDT 190
Query: 232 --CSAAQKPAAAKISNYEEVPS----GDEQALLKAVSMQPVSIAIAAYSTEFQSYKEGIF 285
C + NY S G++ + + P +A Y +F +Y G++
Sbjct: 191 PKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYE-DFIAYNSGVY 249
Query: 286 NGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGI--GTR 342
+ V G L HAV +VG+GT+ +G YW I NSW WG GY I R CGI G
Sbjct: 250 HHVSGQYLGGHAVRLVGWGTS-NGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGS 308
Query: 343 SSYPLA 348
+ PLA
Sbjct: 309 AGIPLA 314
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 117/240 (48%), Gaps = 31/240 (12%)
Query: 128 YQNLSMTDVPTSLDWRDKGAV---TPIKNQ---KECGCCWAFAAVAAVEGITKI-RSGNL 180
++ LS D+P S DWR+ V + +NQ + CG CWA A+ +A+ I R G
Sbjct: 28 HEYLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAW 87
Query: 181 IQ--LSEQQLLDCSTNGNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVP--------- 229
LS Q ++DC G+ C GG+ + Y Q GI E YQA
Sbjct: 88 PSTLLSVQNVIDCGNAGS--CEGGNDLSVWDYAHQ-HGIPDETCNNYQAKDQECDKFNQC 144
Query: 230 GTCSAAQKPAAAK------ISNYEEVPSGDEQALLKAVSMQPVSIAIAAYSTEFQSYKEG 283
GTC+ ++ A + + +Y + SG E+ + + + P+S I A + +Y G
Sbjct: 145 GTCNEFKECHAIRNYTLWRVGDYGSL-SGREKMMAEIYANGPISCGIMA-TERLANYTGG 202
Query: 284 IFNGVCGTQ-LDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGIGTR 342
I+ T ++H V++ G+G + DG YW+++NSWG WG+ G+++IV G G R
Sbjct: 203 IYAEYQDTTYINHVVSVAGWGIS-DGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGAR 261
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 107/245 (43%), Gaps = 44/245 (17%)
Query: 136 VPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAVEGITKIRSGNLIQL---SEQQL 188
+P S D R++ P I++Q CG WAF AV A+ I + + + +E L
Sbjct: 7 LPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 66
Query: 189 LDCSTNGNNGCLGGSREKAFAYIIQNQGIATEDEY-------PYQ----------AVPGT 231
C + +GC GG +A+ + + +G+ + Y PY A P
Sbjct: 67 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPC 125
Query: 232 CSAAQKPAAAKIS----------------NYEEVPSGDEQALLKAVSMQPVSIAIAAYST 275
P +KI N V + ++ + + PV A + YS
Sbjct: 126 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYS- 184
Query: 276 EFQSYKEGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDE 334
+F YK G++ V G + HA+ I+G+G E+G YWL+ NSW WGD G+ KI+R +
Sbjct: 185 DFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQ 243
Query: 335 GLCGI 339
CGI
Sbjct: 244 DHCGI 248
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 110/246 (44%), Gaps = 44/246 (17%)
Query: 135 DVPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAVEGITKIRSGNLIQL---SEQQ 187
++P S D R++ + P I++Q CG CWAF AV A+ I + + + +E
Sbjct: 6 NLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 65
Query: 188 LLDCSTNGNNGCLGGSREKAFAYIIQNQGIATEDEY-------PYQ----------AVPG 230
L C +GC GG A+ + + +G+ + Y PY A P
Sbjct: 66 LTCCGIQCGDGCNGGYPSGAWNFWTR-KGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPP 124
Query: 231 TCSAAQKPAAAKI------SNYEE----------VPSGDEQALLKAVSMQPVSIAIAAYS 274
P K+ ++Y+E V +++ + + PV A +S
Sbjct: 125 CTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFS 184
Query: 275 TEFQSYKEGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRD 333
+F +YK G++ G + HA+ I+G+G E+G YWL+ NSW WGD G+ KI+R
Sbjct: 185 -DFLTYKSGVYKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNADWGDNGFFKILRG 242
Query: 334 EGLCGI 339
E CGI
Sbjct: 243 ENHCGI 248
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 44/245 (17%)
Query: 136 VPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAVEGITKIRSGNLIQL---SEQQL 188
+P S D R++ + P I++Q CG CWAF AV A+ I + + + +E L
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 189 LDCSTNGNNGCLGGSREKAFAYIIQNQGIATEDEY-------PYQ----------AVPGT 231
C +GC GG A+ + + +G+ + Y PY A P
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTR-KGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPC 119
Query: 232 CSAAQKPAAAKI------SNYEE----------VPSGDEQALLKAVSMQPVSIAIAAYST 275
P K+ ++Y+E V +++ + + PV A +S
Sbjct: 120 TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFS- 178
Query: 276 EFQSYKEGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDE 334
+F +YK G++ G + HA+ I+G+G E+G YWL+ NSW WGD G+ KI+R E
Sbjct: 179 DFLTYKSGVYKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNADWGDNGFFKILRGE 237
Query: 335 GLCGI 339
CGI
Sbjct: 238 NHCGI 242
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 109/246 (44%), Gaps = 44/246 (17%)
Query: 135 DVPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAVEGITKIRSGNLIQL---SEQQ 187
++P S D R++ + P I++Q CG WAF AV A+ I + + + +E
Sbjct: 62 NLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 121
Query: 188 LLDCSTNGNNGCLGGSREKAFAYIIQNQGIATEDEY-------PYQ----------AVPG 230
L C +GC GG A+ + + +G+ + Y PY A P
Sbjct: 122 LTCCGIQCGDGCNGGYPSGAWNFWTR-KGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPP 180
Query: 231 TCSAAQKPAAAKI------SNYEE----------VPSGDEQALLKAVSMQPVSIAIAAYS 274
P K+ ++Y+E V +++ + + PV A +S
Sbjct: 181 CTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFS 240
Query: 275 TEFQSYKEGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRD 333
+F +YK G++ G + HA+ I+G+G E+G YWL+ NSW WGD G+ KI+R
Sbjct: 241 -DFLTYKSGVYKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNADWGDNGFFKILRG 298
Query: 334 EGLCGI 339
E CGI
Sbjct: 299 ENHCGI 304
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 115/238 (48%), Gaps = 33/238 (13%)
Query: 136 VPTSLDWRDKGAV---TPIKNQ---KECGCCWAFAAVAAVEGITKI-RSGNL--IQLSEQ 186
+P S DWR+ V + +NQ + CG CWA A+ +A+ I R G LS Q
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 187 QLLDCSTNGNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVP---------GTCSAAQK 237
++DC G+ C GG+ + Y Q GI E YQA GTC+ ++
Sbjct: 61 NVIDCGNAGS--CEGGNDLSVWDYAHQ-HGIPDETCNNYQAKDQECDKFNQCGTCNEFKE 117
Query: 238 PAAAK------ISNYEEVPSGDEQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGT 291
A + + +Y + SG E+ + + + P+S I A + +Y GI+ T
Sbjct: 118 CHAIRNYTLWRVGDYGSL-SGREKMMAEIYANGPISCGIMA-TERLANYTGGIYAEYQDT 175
Query: 292 Q-LDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGIGTRSSYPLA 348
++H V++ G+G + DG YW+++NSWG WG+ G+++IV G G R Y LA
Sbjct: 176 TYINHVVSVAGWGIS-DGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGAR--YNLA 230
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 77.8 bits (190), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 102/244 (41%), Gaps = 42/244 (17%)
Query: 136 VPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAVEGITKIRSGNLI--QLSEQQLL 189
+P S D R++ P I++Q CG CWAF AV A+ I S + ++S + +L
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 190 DCSTNGNNGCLGGSREKAFAYIIQNQGIATEDEY-------PYQAVP------------- 229
C G +G+ + Y PY P
Sbjct: 61 TCCGGECGDGCNGGEPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 230 ---------GTCSAAQKPAAAKISNYE----EVPSGDEQALLKAVSMQPVSIAIAAYSTE 276
TC P+ + ++ V + +++ + + PV A + YS +
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYS-D 179
Query: 277 FQSYKEGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEG 335
F YK G++ V G + HA+ I+G+G E+G YWL+ NSW WGD G+ KI+R +
Sbjct: 180 FLLYKSGVYQHVSGEIMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQD 238
Query: 336 LCGI 339
CGI
Sbjct: 239 HCGI 242
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 102/244 (41%), Gaps = 42/244 (17%)
Query: 136 VPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAVEGITKIRSGNLI--QLSEQQLL 189
+P S D R++ P I++Q CG CWAF AV A+ I S + ++S + +L
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 190 DCSTNGNNGCLGGSREKAFAYIIQNQGIATEDEY-------PYQAVP------------- 229
C G +G+ + Y PY P
Sbjct: 61 TCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 230 ---------GTCSAAQKPAAAKISNYE----EVPSGDEQALLKAVSMQPVSIAIAAYSTE 276
TC P+ + ++ V + +++ + + PV A + YS +
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYS-D 179
Query: 277 FQSYKEGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEG 335
F YK G++ V G + HA+ I+G+G E+G YWL+ NSW WGD G+ KI+R +
Sbjct: 180 FLLYKSGVYQHVSGEIMGGHAIRILGWGV-ENGTPYWLVGNSWNTDWGDNGFFKILRGQD 238
Query: 336 LCGI 339
CGI
Sbjct: 239 HCGI 242
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 81/166 (48%), Gaps = 22/166 (13%)
Query: 136 VPTSLDWRDKGA---VTPIKNQKECGCCWAFAAVAAVEGITKIRSGN--LIQLSEQQLLD 190
+PTS DWR+ V+P++NQ CG C++FA++ +E +I + N LS Q+++
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 191 CSTNGNNGCLGGSREKAFAYII-----QNQGIATEDEYPYQAVPGTCSAAQKPAAAKISN 245
CS GC GG F Y+I Q+ G+ E +PY C + S
Sbjct: 61 CSQYA-QGCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSE 114
Query: 246 YEEVP---SGDEQALLK--AVSMQPVSIAIAAYSTEFQSYKEGIFN 286
Y V G +AL+K V P+++A Y +F YK+GI++
Sbjct: 115 YHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYD-DFLHYKKGIYH 159
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 231 TCSAAQKPAAAKISNYE----EVPSGDEQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFN 286
TC P+ + ++ V + +++ + + PV A + YS +F YK G++
Sbjct: 83 TCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYS-DFLLYKSGVYQ 141
Query: 287 GVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGI 339
V G + HA+ I+G+G E+G YWL+ NSW WGD G+ KI+R + CGI
Sbjct: 142 HVSGEIMGGHAIRILGWGV-ENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGI 194
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 38/194 (19%)
Query: 181 IQLSEQQLLDC-STNGNNGCLGGSREKAFAYIIQNQGIATEDEY-------PYQAVP--- 229
+++S + LL C + +GC GG +A+ + + +G+ + Y PY P
Sbjct: 3 VEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEH 61
Query: 230 ------GTCSA-AQKPAAAKIS----------------NYEEVPSGDEQALLKAVSMQPV 266
C+ P +KI N V + ++ + + PV
Sbjct: 62 HVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPV 121
Query: 267 SIAIAAYSTEFQSYKEGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGNTWGDA 325
A + YS +F YK G++ V G + HA+ I+G+G E+G YWL+ NSW WGD
Sbjct: 122 EGAFSVYS-DFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDN 179
Query: 326 GYMKIVRDEGLCGI 339
G+ KI+R + CGI
Sbjct: 180 GFFKILRGQDHCGI 193
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 57.8 bits (138), Expect = 8e-09, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 50 WMAQHGRSYKDELEKEMRLKIFKENLEYIEKANKEGNRTYKLGTNQFSDLTNDEFRALYT 109
+ A + +SY E EK+ R IFK NL YI N++G +Y L N F DL+ DEFR Y
Sbjct: 28 FQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQG-YSYSLKMNHFGDLSRDEFRRKYL 86
Query: 110 GYK 112
G+K
Sbjct: 87 GFK 89
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 56.6 bits (135), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 294 DHAVTIVGFGT-TEDGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGI 339
+HAV +VG+GT + G +YW++KNSWG WG+ GY +I R C I
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAI 56
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 91/218 (41%), Gaps = 41/218 (18%)
Query: 151 IKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGN-NGCLGGSREKAFA 209
+++Q C W FA+ +E I ++ ++S + +C + + C GS F
Sbjct: 25 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 84
Query: 210 YIIQNQG-IATEDEYPYQAVP--GTCSAAQKP-----AAAKISNYEEVPSG--------- 252
II++ G + E YPY V C + KI + + P+
Sbjct: 85 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 144
Query: 253 -------DEQALLKAVSMQPVSI-AIAAY-------STEFQSYKEGIFNGVCGTQL-DHA 296
+ A +K + + ++ ++ AY EF K +CG DHA
Sbjct: 145 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKK---VKNLCGDDTADHA 201
Query: 297 VTIVGFG----TTEDGANYWLIKNSWGNTWGDAGYMKI 330
V IVG+G + + +YW+++NSWG WGD GY K+
Sbjct: 202 VNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 239
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 91/218 (41%), Gaps = 41/218 (18%)
Query: 151 IKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGN-NGCLGGSREKAFA 209
+++Q C W FA+ +E I ++ ++S + +C + + C GS F
Sbjct: 24 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 83
Query: 210 YIIQNQG-IATEDEYPYQAVP--GTCSAAQKP-----AAAKISNYEEVPSG--------- 252
II++ G + E YPY V C + KI + + P+
Sbjct: 84 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 143
Query: 253 -------DEQALLKAVSMQPVSI-AIAAY-------STEFQSYKEGIFNGVCGTQL-DHA 296
+ A +K + + ++ ++ AY EF K +CG DHA
Sbjct: 144 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKK---VQNLCGDDTADHA 200
Query: 297 VTIVGFG----TTEDGANYWLIKNSWGNTWGDAGYMKI 330
V IVG+G + + +YW+++NSWG WGD GY K+
Sbjct: 201 VNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 238
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 311 YWLIKNSWGNTWGDAGYMKIVRD-EGLCGIGTRSSYP 346
YWL+KNSWG WG GY+K+ +D CGI + +SYP
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 40
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
Antigent-2(Ctla Protein), Crammer At Ph 6.0
Length = 80
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
Query: 48 EKWM---AQHGRSYKDELEKEMRLKIFKENLEYIEKANKE---GNRTYKLGTNQFSDLTN 101
E+W+ ++ ++Y+ E E MR +I+ E+ IE+ N++ G T+K+G N +DLT
Sbjct: 8 EEWVEYKSKFDKNYEAE-EDLMRRRIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTP 66
Query: 102 DEFRALYTGYKMP 114
+EF A +G K+P
Sbjct: 67 EEF-AQRSGKKVP 78
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 35.8 bits (81), Expect = 0.034, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 136 VPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAV 169
+P S D R++ P I++Q CG CWAF AV A+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 35.0 bits (79), Expect = 0.057, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 136 VPTSLDWRDKGAVTP----IKNQKECGCCWAFAAVAAV 169
+P S D R++ P I++Q CG CWAF AV A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 39/203 (19%), Positives = 77/203 (37%), Gaps = 29/203 (14%)
Query: 151 IKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLL----DCSTNGNNGCLGGSREK 206
+ +Q G C A A AA++ +I + +L + G+ G+ +
Sbjct: 69 VYDQGRIGSCTANALAAAIQ-FERIHDKQSPEFIPSRLFIYYNERKIEGHVNYDSGAMIR 127
Query: 207 AFAYIIQNQGIATEDEYPY---------QAVPGTCSAAQKPAAAKISNYEEVPSGDEQAL 257
++ G+ E E+PY + P A++KP+ + + + +
Sbjct: 128 DGIKVLHKLGVCPEKEWPYGDTPADPRTEEFPPGAPASKKPSDQCYKDAQNYKITEYSRV 187
Query: 258 LKAVSMQPVSIAIAA-YSTEFQSYKEGIFNGVCGTQLD-----------HAVTIVGFGTT 305
+ + +A+ + + F Y + N ++ HAV VG+
Sbjct: 188 AQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIPLPTKNDTLEGGHAVLCVGY--- 244
Query: 306 EDGANYWLIKNSWGNTWGDAGYM 328
+D ++ I+NSWGN G+ GY
Sbjct: 245 DDEIRHFRIRNSWGNNVGEDGYF 267
>pdb|1H09|A Chain A, Multimodular Pneumococcal Cell Wall Endolysin From Phage
Cp-1
Length = 338
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 243 ISNYEEVPSGDEQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGV----CGTQLDHAVT 298
+ +YE+ PSGD QA A IA A Y + SYK + V Q +++
Sbjct: 89 VLDYEDDPSGDAQANTNACLRFMQMIADAGYKPIYYSYKPFTHDNVDYQQILAQFPNSLW 148
Query: 299 IVGFGTTEDGANY 311
I G+G + AN+
Sbjct: 149 IAGYGLNDGTANF 161
>pdb|1OBA|A Chain A, Multimodular Pneumococcal Cell Wall Endolysin From Phage
Cp-1 Complexed With Choline
Length = 339
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 243 ISNYEEVPSGDEQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGV----CGTQLDHAVT 298
+ +YE+ PSGD QA A IA A Y + SYK + V Q +++
Sbjct: 90 VLDYEDDPSGDAQANTNACLRFMQMIADAGYKPIYYSYKPFTHDNVDYQQILAQFPNSLW 149
Query: 299 IVGFGTTEDGANY 311
I G+G + AN+
Sbjct: 150 IAGYGLNDGTANF 162
>pdb|2IXU|A Chain A, Crystal Structure Of The Modular Cpl-1 Endolysin Complexed
With A Peptidoglycan Analogue (Wild-Type Endolysin)
Length = 339
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 243 ISNYEEVPSGDEQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGV----CGTQLDHAVT 298
+ +YE+ PSGD QA A IA A Y + SYK + V Q +++
Sbjct: 90 VLDYEDDPSGDAQANTNACLRFMQMIADAGYKPIYYSYKPFTHDNVDYQQILAQFPNSLW 149
Query: 299 IVGFGTTEDGANY 311
I G+G + AN+
Sbjct: 150 IAGYGLNDGTANF 162
>pdb|2IXV|A Chain A, Crystal Structure Of The Modular Cpl-1 Endolysin Complexed
With A Peptidoglycan Analogue (E94q Mutant)
pdb|2J8G|A Chain A, Crystal Structure Of The Modular Cpl-1 Endolysin Complexed
With A Peptidoglycan Analogue (E94q Mutant In Complex
With A Tetrasaccharide-Pentapeptide)
pdb|2J8F|A Chain A, Crystal Structure Of The Modular Cpl-1 Endolysin Complexed
With A Peptidoglycan Analogue (e94q Mutant In Complex
With A Disaccharide-pentapeptide)
Length = 339
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 243 ISNYEEVPSGDEQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGV----CGTQLDHAVT 298
+ +Y++ PSGD QA A IA A Y + SYK + V Q +++
Sbjct: 90 VLDYQDDPSGDAQANTNACLRFMQMIADAGYKPIYYSYKPFTHDNVDYQQILAQFPNSLW 149
Query: 299 IVGFGTTEDGANY 311
I G+G + AN+
Sbjct: 150 IAGYGLNDGTANF 162
>pdb|2E00|A Chain A, Crystal Structure Of N392l Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 149 TPIKNQKECGCCWAFAA 165
TP+ NQK G CW FAA
Sbjct: 66 TPVTNQKSSGRCWLFAA 82
>pdb|2DZZ|A Chain A, Crystal Structure Of N392v Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 149 TPIKNQKECGCCWAFAA 165
TP+ NQK G CW FAA
Sbjct: 66 TPVTNQKSSGRCWLFAA 82
>pdb|2E02|A Chain A, Crystal Structure Of H369l Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 149 TPIKNQKECGCCWAFAA 165
TP+ NQK G CW FAA
Sbjct: 66 TPVTNQKSSGRCWLFAA 82
>pdb|2E01|A Chain A, Crystal Structure Of H369a Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 149 TPIKNQKECGCCWAFAA 165
TP+ NQK G CW FAA
Sbjct: 66 TPVTNQKSSGRCWLFAA 82
>pdb|2DZY|A Chain A, Crystal Structure Of N392a Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 149 TPIKNQKECGCCWAFAA 165
TP+ NQK G CW FAA
Sbjct: 66 TPVTNQKSSGRCWLFAA 82
>pdb|1GCB|A Chain A, Gal6, Yeast Bleomycin Hydrolase Dna-Binding Protease
(Thiol)
Length = 454
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 149 TPIKNQKECGCCWAFAA 165
TP+ NQK G CW FAA
Sbjct: 62 TPVTNQKSSGRCWLFAA 78
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 291 TQLDHAVTIVGFGTTEDGANYWLIKNSWG 319
T DH I G ++G Y+ +KNSWG
Sbjct: 314 TTDDHGXQIYGIAKDQEGNEYYXVKNSWG 342
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 148 VTPIKNQKECGCCWAFAAVAAVE 170
+T +KNQ G CW +++ + +E
Sbjct: 22 ITSVKNQNRAGTCWCYSSYSFLE 44
>pdb|2E03|A Chain A, Crystal Structure Of Nq67e Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 149 TPIKNQKECGCCWAFAA 165
TP+ N+K G CW FAA
Sbjct: 66 TPVTNEKSSGRCWLFAA 82
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 293 LDHAVTI--VGFGTTEDGA-NYWLIKNSWGNTWGDAGYM 328
+ HA+T V +DGA W ++NSWG G GY+
Sbjct: 369 MTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 293 LDHAVTI--VGFGTTEDGA-NYWLIKNSWGNTWGDAGYM 328
+ HA+T V +DGA W ++NSWG G GY+
Sbjct: 369 MTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,190,813
Number of Sequences: 62578
Number of extensions: 417446
Number of successful extensions: 1629
Number of sequences better than 100.0: 134
Number of HSP's better than 100.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1133
Number of HSP's gapped (non-prelim): 174
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)