Query 018958
Match_columns 348
No_of_seqs 301 out of 1884
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 05:30:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018958.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018958hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 3.1E-84 6.7E-89 590.4 25.1 300 41-347 65-370 (372)
2 PTZ00203 cathepsin L protease; 100.0 1.3E-80 2.7E-85 591.6 36.7 301 40-347 31-339 (348)
3 PTZ00021 falcipain-2; Provisio 100.0 2.7E-78 5.8E-83 591.7 32.2 306 38-348 160-488 (489)
4 PTZ00200 cysteine proteinase; 100.0 7.8E-77 1.7E-81 579.6 33.3 307 34-348 113-445 (448)
5 KOG1543 Cysteine proteinase Ca 100.0 5.6E-71 1.2E-75 521.8 31.0 287 51-347 30-323 (325)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 1.3E-58 2.8E-63 423.8 23.0 208 136-346 1-240 (243)
7 cd02248 Peptidase_C1A Peptidas 100.0 4.2E-58 9.1E-63 411.0 22.8 207 137-346 1-210 (210)
8 cd02698 Peptidase_C1A_Cathepsi 100.0 5.7E-58 1.2E-62 418.2 22.9 206 136-347 1-237 (239)
9 cd02620 Peptidase_C1A_Cathepsi 100.0 2.3E-57 5E-62 413.5 21.9 205 137-345 1-235 (236)
10 PF00112 Peptidase_C1: Papain 100.0 6.4E-56 1.4E-60 398.2 20.5 211 136-347 1-219 (219)
11 PTZ00049 cathepsin C-like prot 100.0 3.8E-54 8.3E-59 430.2 23.3 211 134-347 379-675 (693)
12 PTZ00364 dipeptidyl-peptidase 100.0 4.1E-54 8.8E-59 425.9 23.0 207 134-344 203-455 (548)
13 smart00645 Pept_C1 Papain fami 100.0 1.7E-50 3.6E-55 351.7 18.2 167 136-343 1-170 (174)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 6E-47 1.3E-51 340.6 20.5 192 139-333 1-212 (223)
15 PTZ00462 Serine-repeat antigen 100.0 1.5E-45 3.2E-50 378.0 21.7 199 148-348 544-781 (1004)
16 KOG1544 Predicted cysteine pro 100.0 3.3E-45 7.2E-50 330.2 7.0 262 76-344 151-456 (470)
17 COG4870 Cysteine protease [Pos 100.0 6.2E-31 1.4E-35 243.4 8.1 194 135-333 98-313 (372)
18 cd00585 Peptidase_C1B Peptidas 99.9 8.3E-24 1.8E-28 205.8 14.7 182 149-333 55-399 (437)
19 PF08246 Inhibitor_I29: Cathep 99.7 1E-17 2.2E-22 118.9 7.3 58 47-104 1-58 (58)
20 PF03051 Peptidase_C1_2: Pepti 99.7 2.1E-16 4.6E-21 154.2 16.0 182 149-333 56-400 (438)
21 smart00848 Inhibitor_I29 Cathe 99.6 2.3E-15 5.1E-20 106.3 5.2 57 47-103 1-57 (57)
22 COG3579 PepC Aminopeptidase C 98.9 1E-08 2.2E-13 94.7 10.9 77 254-332 297-401 (444)
23 KOG4128 Bleomycin hydrolases a 97.3 0.00044 9.4E-09 64.4 6.2 77 148-225 62-168 (457)
24 PF13529 Peptidase_C39_2: Pept 97.0 0.0095 2.1E-07 48.7 11.0 57 252-318 87-144 (144)
25 PF05543 Peptidase_C47: Stapho 96.5 0.027 5.9E-07 48.2 9.9 120 153-320 18-146 (175)
26 PF08127 Propeptide_C1: Peptid 96.5 0.0027 5.8E-08 41.3 2.8 36 75-113 3-38 (41)
27 PF14399 Transpep_BrtH: NlpC/p 88.8 1.1 2.5E-05 42.1 6.5 55 254-316 78-133 (317)
28 COG4990 Uncharacterized protei 85.7 1.9 4.2E-05 37.2 5.4 52 247-319 116-168 (195)
29 PF12385 Peptidase_C70: Papain 76.4 37 0.0008 28.9 9.7 38 253-305 97-135 (166)
30 PF09778 Guanylate_cyc_2: Guan 74.8 10 0.00022 33.8 6.5 58 253-316 112-180 (212)
31 cd00044 CysPc Calpains, domain 71.3 14 0.0003 35.0 7.0 40 293-333 235-302 (315)
32 cd02549 Peptidase_C39A A sub-f 60.9 26 0.00057 28.2 5.9 44 257-318 70-114 (141)
33 PF15052 TMEM169: TMEM169 prot 36.1 16 0.00036 29.6 0.8 48 6-53 53-100 (133)
34 PF03058 Sar8_2: Sar8.2 family 35.6 43 0.00092 25.6 2.9 22 11-32 3-24 (93)
35 PF00648 Peptidase_C2: Calpain 34.3 61 0.0013 30.2 4.5 28 293-320 213-243 (298)
36 PF01640 Peptidase_C10: Peptid 31.9 2.3E+02 0.0049 24.7 7.5 49 255-329 141-192 (192)
37 smart00230 CysPc Calpain-like 30.9 94 0.002 29.5 5.2 26 293-319 227-254 (318)
38 PF13333 rve_2: Integrase core 28.1 1.6E+02 0.0035 19.5 4.6 46 47-108 4-51 (52)
39 PF12776 Myb_DNA-bind_3: Myb/S 24.6 3E+02 0.0064 20.4 8.1 47 38-85 29-75 (96)
40 KOG4404 Tandem pore domain K+ 23.4 1.9E+02 0.0042 27.6 5.6 49 11-59 4-54 (350)
41 PF09680 Tiny_TM_bacill: Prote 22.5 84 0.0018 17.8 1.8 15 16-30 7-21 (24)
42 COG4871 Uncharacterized protei 20.6 58 0.0013 27.7 1.4 16 150-165 135-152 (193)
43 PF05391 Lsm_interact: Lsm int 20.0 84 0.0018 17.2 1.5 12 98-109 9-20 (21)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-84 Score=590.41 Aligned_cols=300 Identities=37% Similarity=0.719 Sum_probs=266.9
Q ss_pred hhHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHccCCCCceEEEcccCCCCCHHHHHHHHcccCCCCCCCCC
Q 018958 41 QSVVEIHEKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKANKEGNRTYKLGTNQFSDLTNDEFRALYTGYKMPSPSHRS 120 (348)
Q Consensus 41 ~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~~f~~n~~~I~~~N~~~~~s~~~g~N~FsD~t~eE~~~~~~~~~~~~~~~~~ 120 (348)
....+.|..|+.+|+|+|.+.+|...|+.+|+.|+..++++++....|.++|+|+|+|||+|||++++++.+..... ..
T Consensus 65 l~~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~~~~-~~ 143 (372)
T KOG1542|consen 65 LGLEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRRGSK-LP 143 (372)
T ss_pred cchHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhcccccccc-Cc
Confidence 45588999999999999999999999999999999999988876545899999999999999999999887664111 10
Q ss_pred CCCccccccCCCCCCCCCceecccCCCCCcccCCCCCcchHHHHHHHHHHHHHHHhcCCcccCCHHHHhhhcCCCCCCCC
Q 018958 121 TTSSTFKYQNLSMTDVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGNNGCL 200 (348)
Q Consensus 121 ~~~~~~~~~~~~~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~gc~ 200 (348)
...... .......||++||||++|.||||||||+||||||||+++++|+++.+++|++++||||+|+||+.. ++||+
T Consensus 144 ~~~~~~--~~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~~-d~gC~ 220 (372)
T KOG1542|consen 144 GDAAEA--PIEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDSC-DNGCN 220 (372)
T ss_pred cccccC--cCCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccCc-CCcCC
Confidence 000111 112334899999999999999999999999999999999999999999999999999999999985 89999
Q ss_pred CCChHHHHHHHHHcCCccCCCCCCCCCCCC-CCCCCCCCcceeecceEecCCccHHHHHHHHH-cCCeEEEEEecchhhc
Q 018958 201 GGSREKAFAYIIQNQGIATEDEYPYQAVPG-TCSAAQKPAAAKISNYEEVPSGDEQALLKAVS-MQPVSIAIAAYSTEFQ 278 (348)
Q Consensus 201 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~-~C~~~~~~~~~~i~~y~~~~~~~~~~ik~al~-~gPV~v~~~~~~~~f~ 278 (348)
||.+..|+.|+++..|+..|++|||++..+ .|........+.|.+|..++ .||++|.+.|. +|||+|+|++. .+|
T Consensus 221 GGl~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~~~~~~v~I~~f~~l~-~nE~~ia~wLv~~GPi~vgiNa~--~mQ 297 (372)
T KOG1542|consen 221 GGLMDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFDKSKIVVSIKDFSMLS-NNEDQIAAWLVTFGPLSVGINAK--PMQ 297 (372)
T ss_pred CCChhHHHHHHHHhCCccccccCCccccCCCccccchhhceEEEeccEecC-CCHHHHHHHHHhcCCeEEEEchH--HHH
Confidence 999999999988888999999999999888 99998888899999999998 59999999987 89999999965 899
Q ss_pred cccCceEeC---CCCCC-CCeEEEEEEEeecCCCccEEEEEcCCCCCCCCCceEEEEcCCCcccccCceeeee
Q 018958 279 SYKEGIFNG---VCGTQ-LDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGIGTRSSYPL 347 (348)
Q Consensus 279 ~y~~Giy~~---~~~~~-~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~~p~ 347 (348)
+|++||..+ .|... ++|||+|||||.+.-.++|||||||||++|||+||+|+.||.|.|||+++++-+.
T Consensus 298 ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N~CGi~~mvss~~ 370 (372)
T KOG1542|consen 298 FYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSNACGIADMVSSAA 370 (372)
T ss_pred HhcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEeccccccccccchhhhh
Confidence 999999998 38755 8999999999997338999999999999999999999999999999999988664
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=1.3e-80 Score=591.57 Aligned_cols=301 Identities=33% Similarity=0.655 Sum_probs=252.9
Q ss_pred chhHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHccCCCCceEEEcccCCCCCHHHHHHHHcccCCCCCCCC
Q 018958 40 EQSVVEIHEKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKANKEGNRTYKLGTNQFSDLTNDEFRALYTGYKMPSPSHR 119 (348)
Q Consensus 40 ~~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~~f~~n~~~I~~~N~~~~~s~~~g~N~FsD~t~eE~~~~~~~~~~~~~~~~ 119 (348)
..++..+|++|+++|+|+|.+.+|+.+|++||++|+++|++||+++ .+|++|+|+|+|||+|||++++++.........
T Consensus 31 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~-~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~~~ 109 (348)
T PTZ00203 31 GTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARN-PHARFGITKFFDLSEAEFAARYLNGAAYFAAAK 109 (348)
T ss_pred ccHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccC-CCeEEeccccccCCHHHHHHHhcCCCccccccc
Confidence 6678889999999999999988899999999999999999999864 699999999999999999987764221111000
Q ss_pred CCCCccccccCCCCCCCCCceecccCCCCCcccCCCCCcchHHHHHHHHHHHHHHHhcCCcccCCHHHHhhhcCCCCCCC
Q 018958 120 STTSSTFKYQNLSMTDVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGNNGC 199 (348)
Q Consensus 120 ~~~~~~~~~~~~~~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~gc 199 (348)
......+........+||++||||+.|+|+||||||.||||||||+++++|+++++++++.++||+|+|+||+.. +.||
T Consensus 110 ~~~~~~~~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~~-~~GC 188 (348)
T PTZ00203 110 QHAGQHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDHV-DNGC 188 (348)
T ss_pred ccccccccccccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccCC-CCCC
Confidence 000011111111123789999999999999999999999999999999999999999999999999999999974 7899
Q ss_pred CCCChHHHHHHHHHc--CCccCCCCCCCCCCCC---CCCCCCC-CcceeecceEecCCccHHHHHHHHH-cCCeEEEEEe
Q 018958 200 LGGSREKAFAYIIQN--QGIATEDEYPYQAVPG---TCSAAQK-PAAAKISNYEEVPSGDEQALLKAVS-MQPVSIAIAA 272 (348)
Q Consensus 200 ~GG~~~~a~~~~~~~--~Gi~~e~~yPY~~~~~---~C~~~~~-~~~~~i~~y~~~~~~~~~~ik~al~-~gPV~v~~~~ 272 (348)
+||++..|++|+.++ +|+++|++|||.+.++ .|..... ....++.+|..++. +++.|+.+|+ +|||+|+|++
T Consensus 189 ~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~-~e~~~~~~l~~~GPv~v~i~a 267 (348)
T PTZ00203 189 GGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMES-SERVMAAWLAKNGPISIAVDA 267 (348)
T ss_pred CCCCHHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCc-CHHHHHHHHHhCCCEEEEEEh
Confidence 999999999999864 5689999999998765 5864322 23567889988874 7888999998 7999999998
Q ss_pred cchhhccccCceEeCCCC-CCCCeEEEEEEEeecCCCccEEEEEcCCCCCCCCCceEEEEcCCCcccccCceeeee
Q 018958 273 YSTEFQSYKEGIFNGVCG-TQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGIGTRSSYPL 347 (348)
Q Consensus 273 ~~~~f~~y~~Giy~~~~~-~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~~p~ 347 (348)
. +|++|++|||+. |. ..++|||+|||||++ +|++|||||||||++|||+|||||+|+.|.|||++.++...
T Consensus 268 ~--~f~~Y~~GIy~~-c~~~~~nHaVliVGYG~~-~g~~YWiikNSWG~~WGe~GY~ri~rg~n~Cgi~~~~~~~~ 339 (348)
T PTZ00203 268 S--SFMSYHSGVLTS-CIGEQLNHGVLLVGYNMT-GEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYPVSVH 339 (348)
T ss_pred h--hhcCccCceeec-cCCCCCCeEEEEEEEecC-CCceEEEEEcCCCCCcCcCceEEEEcCCCcccccceEEEEe
Confidence 5 899999999985 65 457999999999986 78999999999999999999999999999999998877643
No 3
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=2.7e-78 Score=591.70 Aligned_cols=306 Identities=38% Similarity=0.723 Sum_probs=259.0
Q ss_pred CCchhHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHccCCCCceEEEcccCCCCCHHHHHHHHcccCCCC-C
Q 018958 38 THEQSVVEIHEKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKANKEGNRTYKLGTNQFSDLTNDEFRALYTGYKMPS-P 116 (348)
Q Consensus 38 ~~~~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~~f~~n~~~I~~~N~~~~~s~~~g~N~FsD~t~eE~~~~~~~~~~~~-~ 116 (348)
....+....|++|+++|+|+|.+.+|+.+|+++|++|+++|++||++++.+|++|+|+|+|||.|||++++++..... .
T Consensus 160 ~~n~e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~~ 239 (489)
T PTZ00021 160 MTNLENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKSFDFK 239 (489)
T ss_pred ccChHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhccccccccc
Confidence 345667788999999999999999999999999999999999999876689999999999999999999887644211 0
Q ss_pred CCCC--CCCcccc-----ccCCCCCCCCCceecccCCCCCcccCCCCCcchHHHHHHHHHHHHHHHhcCCcccCCHHHHh
Q 018958 117 SHRS--TTSSTFK-----YQNLSMTDVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLL 189 (348)
Q Consensus 117 ~~~~--~~~~~~~-----~~~~~~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~ 189 (348)
.... ....... ..+.....+|+++|||+.|.|+||||||.||||||||+++++|++++++++..++||+|+|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLV 319 (489)
T PTZ00021 240 SNGKKSPRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELV 319 (489)
T ss_pred cccccccccccccccccccccccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHh
Confidence 0000 0000000 00111012499999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCChHHHHHHHHHcCCccCCCCCCCCCC-CCCCCCCCCCcceeecceEecCCccHHHHHHHHH-cCCeE
Q 018958 190 DCSTNGNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAV-PGTCSAAQKPAAAKISNYEEVPSGDEQALLKAVS-MQPVS 267 (348)
Q Consensus 190 dc~~~~~~gc~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~-~~~C~~~~~~~~~~i~~y~~~~~~~~~~ik~al~-~gPV~ 267 (348)
||+.. +.||+||++..|+.|+.+++|+++|++|||.+. ++.|........++|.+|..++ +++|+++|+ .|||+
T Consensus 320 DCs~~-n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~~~~~~~~i~~y~~i~---~~~lk~al~~~GPVs 395 (489)
T PTZ00021 320 DCSFK-NNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPELCNIDRCKEKYKIKSYVSIP---EDKFKEAIRFLGPIS 395 (489)
T ss_pred hhccC-CCCCCCcchHhhhhhhhhccccCcccccCccCCCCCccccccccccceeeeEEEec---HHHHHHHHHhcCCeE
Confidence 99974 889999999999999988779999999999987 4789765445567889998886 468999998 69999
Q ss_pred EEEEecchhhccccCceEeCCCCCCCCeEEEEEEEeecC---------CCccEEEEEcCCCCCCCCCceEEEEcCC----
Q 018958 268 IAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTE---------DGANYWLIKNSWGNTWGDAGYMKIVRDE---- 334 (348)
Q Consensus 268 v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~~---------~g~~ywivkNSWG~~WG~~Gy~~i~~~~---- 334 (348)
|++++. .+|++|++|||+++|+..++|||+|||||++. .+.+|||||||||++|||+|||||+|+.
T Consensus 396 v~i~a~-~~f~~YkgGIy~~~C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~~ 474 (489)
T PTZ00021 396 VSIAVS-DDFAFYKGGIFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGLM 474 (489)
T ss_pred EEEEee-cccccCCCCcCCCCCCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCCC
Confidence 999997 69999999999988988899999999999752 1257999999999999999999999994
Q ss_pred CcccccCceeeeeC
Q 018958 335 GLCGIGTRSSYPLA 348 (348)
Q Consensus 335 ~~Cgi~~~~~~p~~ 348 (348)
|+|||++.++||++
T Consensus 475 n~CGI~t~a~yP~~ 488 (489)
T PTZ00021 475 KTCSLGTEAYVPLI 488 (489)
T ss_pred CCCCCcccceeEec
Confidence 59999999999985
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=7.8e-77 Score=579.64 Aligned_cols=307 Identities=34% Similarity=0.655 Sum_probs=257.3
Q ss_pred ccCCCCchhHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHccCCCCceEEEcccCCCCCHHHHHHHHcccCC
Q 018958 34 SSRSTHEQSVVEIHEKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKANKEGNRTYKLGTNQFSDLTNDEFRALYTGYKM 113 (348)
Q Consensus 34 ~~~~~~~~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~~f~~n~~~I~~~N~~~~~s~~~g~N~FsD~t~eE~~~~~~~~~~ 113 (348)
+.....+.++..+|++|+++|+|.|.+.+|+.+|+.+|++|+++|++||. +.+|++|+|+|+|||+|||.+++++...
T Consensus 113 ~~~~~~e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~--~~~y~lgiN~FsDlT~eEF~~~~~~~~~ 190 (448)
T PTZ00200 113 SDDPKLEFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKG--DEPYSKEINKFSDLTEEEFRKLFPVIKV 190 (448)
T ss_pred CCCccchHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcC--cCCeEEeccccccCCHHHHHHHhccCCC
Confidence 34444577788999999999999999999999999999999999999996 3689999999999999999988776443
Q ss_pred CCCCCC--C--------CCCccc----cc-----cCC-C-CCCCCCceecccCCCCCcccCCC-CCcchHHHHHHHHHHH
Q 018958 114 PSPSHR--S--------TTSSTF----KY-----QNL-S-MTDVPTSLDWRDKGAVTPIKNQK-ECGCCWAFAAVAAVEG 171 (348)
Q Consensus 114 ~~~~~~--~--------~~~~~~----~~-----~~~-~-~~~lP~~~Dwr~~g~v~pV~dQg-~cGsCwAfA~~~~lE~ 171 (348)
+..... . .....+ +. ..+ . ...+|+++|||+.|.|+|||||| .||||||||+++++|+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs 270 (448)
T PTZ00200 191 PPKSNSTSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVES 270 (448)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccCCCCccCCCCCCCCCcccCCCccchHHHHhHHHHHHH
Confidence 211000 0 000000 00 001 0 01369999999999999999999 9999999999999999
Q ss_pred HHHHhcCCcccCCHHHHhhhcCCCCCCCCCCChHHHHHHHHHcCCccCCCCCCCCCCCCCCCCCCCCcceeecceEecCC
Q 018958 172 ITKIRSGNLIQLSEQQLLDCSTNGNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPS 251 (348)
Q Consensus 172 ~~~~~~~~~~~LS~q~l~dc~~~~~~gc~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~y~~~~~ 251 (348)
+++++++..++||+|+|+||+.. +.||+||++..|++|+.++ |+++|++|||.+..+.|.... .....|.+|..++
T Consensus 271 ~~~i~~~~~~~LSeQqLvDC~~~-~~GC~GG~~~~A~~yi~~~-Gi~~e~~YPY~~~~~~C~~~~-~~~~~i~~y~~~~- 346 (448)
T PTZ00200 271 LYKIYRDKSVDLSEQELVNCDTK-SQGCSGGYPDTALEYVKNK-GLSSSSDVPYLAKDGKCVVSS-TKKVYIDSYLVAK- 346 (448)
T ss_pred HHHHhcCCCeecCHHHHhhccCc-cCCCCCCcHHHHHHHHhhc-CccccccCCCCCCCCCCcCCC-CCeeEecceEecC-
Confidence 99999999999999999999974 7899999999999999776 999999999999999998653 3346688887664
Q ss_pred ccHHHHHHHHHcCCeEEEEEecchhhccccCceEeCCCCCCCCeEEEEEEEeec-CCCccEEEEEcCCCCCCCCCceEEE
Q 018958 252 GDEQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTT-EDGANYWLIKNSWGNTWGDAGYMKI 330 (348)
Q Consensus 252 ~~~~~ik~al~~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~-~~g~~ywivkNSWG~~WG~~Gy~~i 330 (348)
..+.+++++..|||+|+|.+. .+|+.|++|||+++|+..++|||+|||||.+ .+|.+|||||||||++||++|||||
T Consensus 347 -~~~~l~~~l~~GPV~v~i~~~-~~f~~Yk~GIy~~~C~~~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri 424 (448)
T PTZ00200 347 -GKDVLNKSLVISPTVVYIAVS-RELLKYKSGVYNGECGKSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRL 424 (448)
T ss_pred -HHHHHHHHHhcCCEEEEeecc-cccccCCCCccccccCCCCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEE
Confidence 345667777789999999997 7999999999998898779999999999964 3688999999999999999999999
Q ss_pred EcC---CCcccccCceeeeeC
Q 018958 331 VRD---EGLCGIGTRSSYPLA 348 (348)
Q Consensus 331 ~~~---~~~Cgi~~~~~~p~~ 348 (348)
+|+ .|.|||++.+.||++
T Consensus 425 ~r~~~g~n~CGI~~~~~~P~~ 445 (448)
T PTZ00200 425 ERTNEGTDKCGILTVGLTPVF 445 (448)
T ss_pred EeCCCCCCcCCccccceeeEE
Confidence 996 589999999999974
No 5
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-71 Score=521.85 Aligned_cols=287 Identities=45% Similarity=0.862 Sum_probs=252.4
Q ss_pred HHHhCCccCChHHHHHHHHHHHHHHHHHHHHccCCCCceEEEcccCCCCCHHHHHHHHcccCCCCCCCCCCCCccccccC
Q 018958 51 MAQHGRSYKDELEKEMRLKIFKENLEYIEKANKEGNRTYKLGTNQFSDLTNDEFRALYTGYKMPSPSHRSTTSSTFKYQN 130 (348)
Q Consensus 51 ~~~~~k~Y~~~~E~~~R~~~f~~n~~~I~~~N~~~~~s~~~g~N~FsD~t~eE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (348)
+.+|.+.|.+..|+..|+.+|.+|++.|+.||.....+|++|+|+|+|+|.+|+++.+.+.+++... . .... ..
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~~-~----~~~~-~~ 103 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEIK-R----DKFT-EK 103 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCcccc-c----cccc-cc
Confidence 6777777777789999999999999999999997668999999999999999999988776654331 1 1111 11
Q ss_pred CCCCCCCCceecccCC-CCCcccCCCCCcchHHHHHHHHHHHHHHHhcC-CcccCCHHHHhhhcCCCCCCCCCCChHHHH
Q 018958 131 LSMTDVPTSLDWRDKG-AVTPIKNQKECGCCWAFAAVAAVEGITKIRSG-NLIQLSEQQLLDCSTNGNNGCLGGSREKAF 208 (348)
Q Consensus 131 ~~~~~lP~~~Dwr~~g-~v~pV~dQg~cGsCwAfA~~~~lE~~~~~~~~-~~~~LS~q~l~dc~~~~~~gc~GG~~~~a~ 208 (348)
....++|++||||++| .++||||||.||||||||++++||++++|+++ .++.||+|+|+||+..++.||+||.+..|+
T Consensus 104 ~~~~~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~GC~GG~~~~A~ 183 (325)
T KOG1543|consen 104 LDGDDLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGECGDGCNGGEPKNAF 183 (325)
T ss_pred cchhhCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCCCCCCcCCCCHHHHH
Confidence 2224899999999996 55669999999999999999999999999999 899999999999998657899999999999
Q ss_pred HHHHHcCCccC-CCCCCCCCCCCCCCCCCCCcceeecceEecCCccHHHHHHHHH-cCCeEEEEEecchhhccccCceEe
Q 018958 209 AYIIQNQGIAT-EDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQALLKAVS-MQPVSIAIAAYSTEFQSYKEGIFN 286 (348)
Q Consensus 209 ~~~~~~~Gi~~-e~~yPY~~~~~~C~~~~~~~~~~i~~y~~~~~~~~~~ik~al~-~gPV~v~~~~~~~~f~~y~~Giy~ 286 (348)
+|+.++ |+++ +.+|||.+..+.|..........+.++..++. ++++|+++|+ +|||+|+|++. .+|+.|++|||.
T Consensus 184 ~yi~~~-G~~t~~~~Ypy~~~~~~C~~~~~~~~~~~~~~~~~~~-~e~~i~~~v~~~GPv~v~~~a~-~~F~~Y~~GVy~ 260 (325)
T KOG1543|consen 184 KYIKKN-GGVTECENYPYIGKDGTCKSNKKDKTVTIKGFYNVPA-NEEAIAEAVAKNGPVSVAIDAY-EDFSLYKGGVYA 260 (325)
T ss_pred HHHHHh-CCCCCCcCCCCcCCCCCccCCCccceeEeeeeeecCc-CHHHHHHHHHhcCCeEEEEeeh-hhhhhccCceEe
Confidence 999998 6666 99999999999999986667778888888885 4999999998 79999999999 599999999999
Q ss_pred CCCC-C-CCCeEEEEEEEeecCCCccEEEEEcCCCCCCCCCceEEEEcCCCcccccCceee-ee
Q 018958 287 GVCG-T-QLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGIGTRSSY-PL 347 (348)
Q Consensus 287 ~~~~-~-~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~~-p~ 347 (348)
+++. . .++|||+|||||. .++.+|||||||||+.|||+|||||.|+.+.|+|++.++| |+
T Consensus 261 ~~~~~~~~~~Hav~iVGyG~-~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~~I~~~~~~~p~ 323 (325)
T KOG1543|consen 261 EEKGDDKEGDHAVLIVGYGT-GDGVDYWIVKNSWGTDWGEKGYFRIARGVNKCGIASEASYGPI 323 (325)
T ss_pred CCCCCCCCCCceEEEEEEcC-CCCceeEEEEcCCCCCcccCceEEEecCCCchhhhcccccCCC
Confidence 9844 4 5999999999999 6889999999999999999999999999999999999999 65
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=1.3e-58 Score=423.78 Aligned_cols=208 Identities=37% Similarity=0.723 Sum_probs=181.7
Q ss_pred CCCceecccCC----CCCcccCCCCCcchHHHHHHHHHHHHHHHhcCC------cccCCHHHHhhhcCCCCCCCCCCChH
Q 018958 136 VPTSLDWRDKG----AVTPIKNQKECGCCWAFAAVAAVEGITKIRSGN------LIQLSEQQLLDCSTNGNNGCLGGSRE 205 (348)
Q Consensus 136 lP~~~Dwr~~g----~v~pV~dQg~cGsCwAfA~~~~lE~~~~~~~~~------~~~LS~q~l~dc~~~~~~gc~GG~~~ 205 (348)
||++||||+.+ +|+||||||.||+|||||+++++|+++++++++ .+.||+|+|++|+.. +.||+||++.
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~-~~GC~GG~~~ 79 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQY-SQGCDGGFPF 79 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCC-CCCCCCCCHH
Confidence 79999999988 999999999999999999999999999998876 688999999999874 7899999999
Q ss_pred HHHHHHHHcCCccCCCCCCCCC-CCCCCCCCC-CCcceeecceEecC----CccHHHHHHHHH-cCCeEEEEEecchhhc
Q 018958 206 KAFAYIIQNQGIATEDEYPYQA-VPGTCSAAQ-KPAAAKISNYEEVP----SGDEQALLKAVS-MQPVSIAIAAYSTEFQ 278 (348)
Q Consensus 206 ~a~~~~~~~~Gi~~e~~yPY~~-~~~~C~~~~-~~~~~~i~~y~~~~----~~~~~~ik~al~-~gPV~v~~~~~~~~f~ 278 (348)
.++.|+.++ |+++|++|||.. ..+.|.... .....++..|..+. ..++++||++|. +|||+++|++. ++|+
T Consensus 80 ~a~~~~~~~-Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~-~~F~ 157 (243)
T cd02621 80 LVGKFAEDF-GIVTEDYFPYTADDDRPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVY-SDFD 157 (243)
T ss_pred HHHHHHHhc-CcCCCceeCCCCCCCCCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEec-cccc
Confidence 999999876 999999999998 677897653 33344555555442 257899999997 79999999998 7999
Q ss_pred cccCceEeCC-----CCC---------CCCeEEEEEEEeecC-CCccEEEEEcCCCCCCCCCceEEEEcCCCcccccCce
Q 018958 279 SYKEGIFNGV-----CGT---------QLDHAVTIVGFGTTE-DGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGIGTRS 343 (348)
Q Consensus 279 ~y~~Giy~~~-----~~~---------~~~Hav~iVGyg~~~-~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~ 343 (348)
.|++|||+.+ |.. .++|||+|||||++. ++.+|||||||||++||++|||||+|+.|.|||++.+
T Consensus 158 ~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~~~cgi~~~~ 237 (243)
T cd02621 158 FYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQA 237 (243)
T ss_pred ccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCCcccCcccce
Confidence 9999999875 532 479999999999974 4889999999999999999999999999999999998
Q ss_pred eee
Q 018958 344 SYP 346 (348)
Q Consensus 344 ~~p 346 (348)
+++
T Consensus 238 ~~~ 240 (243)
T cd02621 238 VFA 240 (243)
T ss_pred Eee
Confidence 653
No 7
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=4.2e-58 Score=411.00 Aligned_cols=207 Identities=54% Similarity=1.096 Sum_probs=191.3
Q ss_pred CCceecccCCCCCcccCCCCCcchHHHHHHHHHHHHHHHhcCCcccCCHHHHhhhcCCCCCCCCCCChHHHHHHHHHcCC
Q 018958 137 PTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGNNGCLGGSREKAFAYIIQNQG 216 (348)
Q Consensus 137 P~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~gc~GG~~~~a~~~~~~~~G 216 (348)
|++||||+.+.++||+|||.||+|||||++++||++++++++...+||+|+|++|....+.+|.||+...+++++.+. |
T Consensus 1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~gC~GG~~~~a~~~~~~~-G 79 (210)
T cd02248 1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEYVKNG-G 79 (210)
T ss_pred CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCCCCCCCCCCCHHHhHHHHHHC-C
Confidence 889999999999999999999999999999999999999999889999999999987446899999999999988765 9
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCcceeecceEecCCccHHHHHHHHH-cCCeEEEEEecchhhccccCceEeCC-C-CCCC
Q 018958 217 IATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQALLKAVS-MQPVSIAIAAYSTEFQSYKEGIFNGV-C-GTQL 293 (348)
Q Consensus 217 i~~e~~yPY~~~~~~C~~~~~~~~~~i~~y~~~~~~~~~~ik~al~-~gPV~v~~~~~~~~f~~y~~Giy~~~-~-~~~~ 293 (348)
+++|++|||......|.........++.+|..++..++++||++|. +|||++++.+. ++|+.|++|||..+ | ...+
T Consensus 80 i~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~-~~f~~y~~Giy~~~~~~~~~~ 158 (210)
T cd02248 80 LASESDYPYTGKDGTCKYNSSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDAS-SSFQFYKGGIYSGPCCSNTNL 158 (210)
T ss_pred cCccccCCccCCCCCccCCCCcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecC-cccccCCCCceeCCCCCCCcC
Confidence 9999999999988899887667788999999998767899999998 69999999998 79999999999987 4 3567
Q ss_pred CeEEEEEEEeecCCCccEEEEEcCCCCCCCCCceEEEEcCCCcccccCceeee
Q 018958 294 DHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGIGTRSSYP 346 (348)
Q Consensus 294 ~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~~p 346 (348)
+|||+|||||++ .+.+|||||||||+.||++|||||+|+.|.|||++.+.||
T Consensus 159 ~Hav~iVGy~~~-~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~~ 210 (210)
T cd02248 159 NHAVLLVGYGTE-NGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYASYP 210 (210)
T ss_pred CEEEEEEEEeec-CCceEEEEEcCCCCccccCcEEEEEcCCCccCceeeeecC
Confidence 999999999997 6889999999999999999999999999999999998887
No 8
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=5.7e-58 Score=418.20 Aligned_cols=206 Identities=29% Similarity=0.667 Sum_probs=181.5
Q ss_pred CCCceecccCC---CCCcccCCC---CCcchHHHHHHHHHHHHHHHhcC---CcccCCHHHHhhhcCCCCCCCCCCChHH
Q 018958 136 VPTSLDWRDKG---AVTPIKNQK---ECGCCWAFAAVAAVEGITKIRSG---NLIQLSEQQLLDCSTNGNNGCLGGSREK 206 (348)
Q Consensus 136 lP~~~Dwr~~g---~v~pV~dQg---~cGsCwAfA~~~~lE~~~~~~~~---~~~~LS~q~l~dc~~~~~~gc~GG~~~~ 206 (348)
||++||||+.+ +|+|||||| .||||||||++++||++++++++ ..+.||+|+|+||+. +.||+||++..
T Consensus 1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~--~~gC~GG~~~~ 78 (239)
T cd02698 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG--GGSCHGGDPGG 78 (239)
T ss_pred CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC--CCCccCcCHHH
Confidence 69999999987 899999998 99999999999999999998865 357899999999986 68999999999
Q ss_pred HHHHHHHcCCccCCCCCCCCCCCCCCCCC---------------CCCcceeecceEecCCccHHHHHHHHH-cCCeEEEE
Q 018958 207 AFAYIIQNQGIATEDEYPYQAVPGTCSAA---------------QKPAAAKISNYEEVPSGDEQALLKAVS-MQPVSIAI 270 (348)
Q Consensus 207 a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~---------------~~~~~~~i~~y~~~~~~~~~~ik~al~-~gPV~v~~ 270 (348)
+++|+.++ |+++|++|||......|... .....+++.+|..++ ++++||++|. +|||+++|
T Consensus 79 a~~~~~~~-Gl~~e~~yPY~~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~--~~~~i~~~l~~~GPV~v~i 155 (239)
T cd02698 79 VYEYAHKH-GIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS--GRDKMMAEIYARGPISCGI 155 (239)
T ss_pred HHHHHHHc-CcCCCCeeCCcCCCCCCcCCCCCCCcccCcccccccccceEEeeeceecC--CHHHHHHHHHHcCCEEEEE
Confidence 99999886 99999999999877667531 012235677777775 5788999986 89999999
Q ss_pred EecchhhccccCceEeCC-CCCCCCeEEEEEEEeecCCCccEEEEEcCCCCCCCCCceEEEEcCC-----CcccccCcee
Q 018958 271 AAYSTEFQSYKEGIFNGV-CGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDE-----GLCGIGTRSS 344 (348)
Q Consensus 271 ~~~~~~f~~y~~Giy~~~-~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~-----~~Cgi~~~~~ 344 (348)
.+. .+|+.|++|||+.. |...++|||+|||||++.++++|||||||||++|||+|||||+|+. |+|||++.++
T Consensus 156 ~~~-~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~~ 234 (239)
T cd02698 156 MAT-EALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCA 234 (239)
T ss_pred Eec-ccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccceE
Confidence 998 59999999999886 5567899999999998744899999999999999999999999998 9999999999
Q ss_pred eee
Q 018958 345 YPL 347 (348)
Q Consensus 345 ~p~ 347 (348)
|+.
T Consensus 235 ~~~ 237 (239)
T cd02698 235 WAD 237 (239)
T ss_pred EEe
Confidence 974
No 9
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=2.3e-57 Score=413.45 Aligned_cols=205 Identities=36% Similarity=0.735 Sum_probs=175.9
Q ss_pred CCceecccC--CCC--CcccCCCCCcchHHHHHHHHHHHHHHHhcC--CcccCCHHHHhhhcCCCCCCCCCCChHHHHHH
Q 018958 137 PTSLDWRDK--GAV--TPIKNQKECGCCWAFAAVAAVEGITKIRSG--NLIQLSEQQLLDCSTNGNNGCLGGSREKAFAY 210 (348)
Q Consensus 137 P~~~Dwr~~--g~v--~pV~dQg~cGsCwAfA~~~~lE~~~~~~~~--~~~~LS~q~l~dc~~~~~~gc~GG~~~~a~~~ 210 (348)
|++||||+. +++ +||+|||.||+|||||++++||+++.++++ +.+.||+|+|+||+..++.||+||++..|++|
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~GG~~~~a~~~ 80 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGYPDAAWKY 80 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCCCCHHHHHHH
Confidence 899999996 554 599999999999999999999999999887 77899999999998754789999999999999
Q ss_pred HHHcCCccCCCCCCCCCCCCC------------------CCCCC----CCcceeecceEecCCccHHHHHHHHH-cCCeE
Q 018958 211 IIQNQGIATEDEYPYQAVPGT------------------CSAAQ----KPAAAKISNYEEVPSGDEQALLKAVS-MQPVS 267 (348)
Q Consensus 211 ~~~~~Gi~~e~~yPY~~~~~~------------------C~~~~----~~~~~~i~~y~~~~~~~~~~ik~al~-~gPV~ 267 (348)
++++ |+++|++|||.+.... |.... .....++..+..+. .++++||.+|. +|||+
T Consensus 81 i~~~-G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~-~~~~~ik~~l~~~GPv~ 158 (236)
T cd02620 81 LTTT-GVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVP-SDETDIMKEIMTNGPVQ 158 (236)
T ss_pred HHhc-CCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeC-CHHHHHHHHHHHCCCeE
Confidence 9886 9999999999876543 33221 11123455555565 47899999997 79999
Q ss_pred EEEEecchhhccccCceEeCCCC-CCCCeEEEEEEEeecCCCccEEEEEcCCCCCCCCCceEEEEcCCCcccccCceee
Q 018958 268 IAIAAYSTEFQSYKEGIFNGVCG-TQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEGLCGIGTRSSY 345 (348)
Q Consensus 268 v~~~~~~~~f~~y~~Giy~~~~~-~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~~ 345 (348)
++|.+. ++|+.|++|||+..|+ ..++|||+|||||++ ++++|||||||||++|||+|||||+|+.|.|||++.++.
T Consensus 159 v~i~~~-~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~-~g~~YWivrNSWG~~WGe~Gy~ri~~~~~~cgi~~~~~~ 235 (236)
T cd02620 159 AAFTVY-EDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVE-NGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVVA 235 (236)
T ss_pred EEEEec-hhhhhcCCcEEeecCCCCcCCeEEEEEEEecc-CCeeEEEEEeCCCCCCCCCcEEEEEccCcccccccceec
Confidence 999997 7999999999987655 346899999999987 889999999999999999999999999999999998763
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=6.4e-56 Score=398.24 Aligned_cols=211 Identities=45% Similarity=0.894 Sum_probs=184.6
Q ss_pred CCCceecccC-CCCCcccCCCCCcchHHHHHHHHHHHHHHHhc-CCcccCCHHHHhhhcCCCCCCCCCCChHHHHHHHHH
Q 018958 136 VPTSLDWRDK-GAVTPIKNQKECGCCWAFAAVAAVEGITKIRS-GNLIQLSEQQLLDCSTNGNNGCLGGSREKAFAYIIQ 213 (348)
Q Consensus 136 lP~~~Dwr~~-g~v~pV~dQg~cGsCwAfA~~~~lE~~~~~~~-~~~~~LS~q~l~dc~~~~~~gc~GG~~~~a~~~~~~ 213 (348)
||++||||+. +.++||+|||.||+|||||+++++|++++++. ...++||+|+|++|....+.+|+||++..|+.++++
T Consensus 1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~~c~gg~~~~a~~~~~~ 80 (219)
T PF00112_consen 1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNKYNKGCDGGSPFDALKYIKN 80 (219)
T ss_dssp STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTGTSSTTBBBEHHHHHHHHHH
T ss_pred CCCCEecccCCCCcCccccCCcccccccchhccceeccccccccccccccccccccccccccccccccCcccccceeecc
Confidence 7999999998 48999999999999999999999999999999 788999999999999733679999999999999998
Q ss_pred cCCccCCCCCCCCCCC-CCCCCCCCCc-ceeecceEecCCccHHHHHHHHH-cCCeEEEEEecchhhccccCceEeCC-C
Q 018958 214 NQGIATEDEYPYQAVP-GTCSAAQKPA-AAKISNYEEVPSGDEQALLKAVS-MQPVSIAIAAYSTEFQSYKEGIFNGV-C 289 (348)
Q Consensus 214 ~~Gi~~e~~yPY~~~~-~~C~~~~~~~-~~~i~~y~~~~~~~~~~ik~al~-~gPV~v~~~~~~~~f~~y~~Giy~~~-~ 289 (348)
+.|+++|++|||.... ..|....... ..++..|..+...++++||++|. +|||++++.+...+|+.|++|||..+ |
T Consensus 81 ~~Gi~~e~~~pY~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~~ 160 (219)
T PF00112_consen 81 NNGIVTEEDYPYNGNENPTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPDC 160 (219)
T ss_dssp HTSBEBTTTS--SSSSSCSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECSTSS
T ss_pred cCcccccccccccccccccccccccccccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeecccc
Confidence 4599999999999877 6888764333 47889999988667999999998 69999999999547999999999996 6
Q ss_pred C-CCCCeEEEEEEEeecCCCccEEEEEcCCCCCCCCCceEEEEcCCC-cccccCceeeee
Q 018958 290 G-TQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDEG-LCGIGTRSSYPL 347 (348)
Q Consensus 290 ~-~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~-~Cgi~~~~~~p~ 347 (348)
. ..++|||+|||||++ .+++|||||||||++||++|||||+|+.+ +|||++.++||+
T Consensus 161 ~~~~~~Hav~iVGy~~~-~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 161 SNESGGHAVLIVGYDDE-NGKGYWIVKNSWGTDWGDNGYFRISYDYNNECGIESQAVYPI 219 (219)
T ss_dssp SSSSEEEEEEEEEEEEE-TTEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGTTSSEEEEE
T ss_pred ccccccccccccccccc-cceeeEeeehhhCCccCCCeEEEEeeCCCCcCccCceeeecC
Confidence 5 478999999999998 79999999999999999999999999976 999999999996
No 11
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=3.8e-54 Score=430.19 Aligned_cols=211 Identities=28% Similarity=0.594 Sum_probs=177.7
Q ss_pred CCCCCceecccC----CCCCcccCCCCCcchHHHHHHHHHHHHHHHhcCC-----c-----ccCCHHHHhhhcCCCCCCC
Q 018958 134 TDVPTSLDWRDK----GAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGN-----L-----IQLSEQQLLDCSTNGNNGC 199 (348)
Q Consensus 134 ~~lP~~~Dwr~~----g~v~pV~dQg~cGsCwAfA~~~~lE~~~~~~~~~-----~-----~~LS~q~l~dc~~~~~~gc 199 (348)
.+||++||||+. +.++||+|||.||||||||++++||++++|++++ . ..||+|+|+||+.. +.||
T Consensus 379 ~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~-nqGC 457 (693)
T PTZ00049 379 DELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFY-DQGC 457 (693)
T ss_pred ccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCC-CCCc
Confidence 489999999984 6799999999999999999999999999998643 1 27999999999974 7899
Q ss_pred CCCChHHHHHHHHHcCCccCCCCCCCCCCCCCCCCCCCC---------------------------------------cc
Q 018958 200 LGGSREKAFAYIIQNQGIATEDEYPYQAVPGTCSAAQKP---------------------------------------AA 240 (348)
Q Consensus 200 ~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~---------------------------------------~~ 240 (348)
+||.+..|+.|+.+. ||++|++|||.+..+.|...... ..
T Consensus 458 ~GG~~~~A~kya~~~-GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 536 (693)
T PTZ00049 458 NGGFPYLVSKMAKLQ-GIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPAR 536 (693)
T ss_pred CCCcHHHHHHHHHHC-CCCcCCccCCcCCCCCCCCCCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999876 99999999999888888642110 11
Q ss_pred eeecceEecC-------CccHHHHHHHHH-cCCeEEEEEecchhhccccCceEeCC-------CCC--------------
Q 018958 241 AKISNYEEVP-------SGDEQALLKAVS-MQPVSIAIAAYSTEFQSYKEGIFNGV-------CGT-------------- 291 (348)
Q Consensus 241 ~~i~~y~~~~-------~~~~~~ik~al~-~gPV~v~~~~~~~~f~~y~~Giy~~~-------~~~-------------- 291 (348)
..+.+|..+. ..++++|+++|. +|||+|+|++. ++|+.|++|||+.+ |..
T Consensus 537 ~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~-~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~ 615 (693)
T PTZ00049 537 WYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEAS-PDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGW 615 (693)
T ss_pred eeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEec-hhhhcCCCccccCcccccccccCCcccccccccccccc
Confidence 2344455543 146889999998 79999999997 79999999999852 531
Q ss_pred -CCCeEEEEEEEeecC-CCc--cEEEEEcCCCCCCCCCceEEEEcCCCcccccCceeeee
Q 018958 292 -QLDHAVTIVGFGTTE-DGA--NYWLIKNSWGNTWGDAGYMKIVRDEGLCGIGTRSSYPL 347 (348)
Q Consensus 292 -~~~Hav~iVGyg~~~-~g~--~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~~p~ 347 (348)
.++|||+|||||.+. +|. +|||||||||++||++|||||+|+.|.|||++.++|+.
T Consensus 616 e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGIEs~a~~~~ 675 (693)
T PTZ00049 616 EKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFIE 675 (693)
T ss_pred ccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCCCccCCccceeEEe
Confidence 369999999999752 453 79999999999999999999999999999999999864
No 12
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=4.1e-54 Score=425.91 Aligned_cols=207 Identities=28% Similarity=0.539 Sum_probs=177.7
Q ss_pred CCCCCceecccCC---CCCcccCCCC---CcchHHHHHHHHHHHHHHHhcC------CcccCCHHHHhhhcCCCCCCCCC
Q 018958 134 TDVPTSLDWRDKG---AVTPIKNQKE---CGCCWAFAAVAAVEGITKIRSG------NLIQLSEQQLLDCSTNGNNGCLG 201 (348)
Q Consensus 134 ~~lP~~~Dwr~~g---~v~pV~dQg~---cGsCwAfA~~~~lE~~~~~~~~------~~~~LS~q~l~dc~~~~~~gc~G 201 (348)
.+||++||||+.| +++||||||. ||||||||++++||++++++++ ..+.||+|+|+||+.. ++||+|
T Consensus 203 ~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~-n~GCdG 281 (548)
T PTZ00364 203 DPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQY-GQGCAG 281 (548)
T ss_pred cCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccCC-CCCCCC
Confidence 4799999999987 7999999999 9999999999999999999873 4688999999999874 789999
Q ss_pred CChHHHHHHHHHcCCccCCCCC--CCCCCCC---CCCCCCCCcceeec------ceEecCCccHHHHHHHHH-cCCeEEE
Q 018958 202 GSREKAFAYIIQNQGIATEDEY--PYQAVPG---TCSAAQKPAAAKIS------NYEEVPSGDEQALLKAVS-MQPVSIA 269 (348)
Q Consensus 202 G~~~~a~~~~~~~~Gi~~e~~y--PY~~~~~---~C~~~~~~~~~~i~------~y~~~~~~~~~~ik~al~-~gPV~v~ 269 (348)
|++..|++|+.++ |+++|++| ||.+.++ .|........+.+. +|..+. +++++|+.+|. +|||+|+
T Consensus 282 G~p~~A~~yi~~~-GI~tE~dY~~PY~~~dg~~~~Ck~~~~~~~y~~~~~~~I~gyy~~~-~~e~~I~~eI~~~GPVsVa 359 (548)
T PTZ00364 282 GFPEEVGKFAETF-GILTTDSYYIPYDSGDGVERACKTRRPSRRYYFTNYGPLGGYYGAV-TDPDEIIWEIYRHGPVPAS 359 (548)
T ss_pred CcHHHHHHHHHhC-CcccccccCCCCCCCCCCCCCCCCCcccceeeeeeeEEecceeecC-CcHHHHHHHHHHcCCeEEE
Confidence 9999999999876 99999999 9987655 48765333333333 444444 47888999997 7999999
Q ss_pred EEecchhhccccCceEeCC---------C-----------CCCCCeEEEEEEEeecCCCccEEEEEcCCCC--CCCCCce
Q 018958 270 IAAYSTEFQSYKEGIFNGV---------C-----------GTQLDHAVTIVGFGTTEDGANYWLIKNSWGN--TWGDAGY 327 (348)
Q Consensus 270 ~~~~~~~f~~y~~Giy~~~---------~-----------~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~--~WG~~Gy 327 (348)
|++. .+|+.|++|||.+. | ...++|||+|||||.+++|.+|||||||||+ +|||+||
T Consensus 360 Ida~-~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GY 438 (548)
T PTZ00364 360 VYAN-SDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGT 438 (548)
T ss_pred EEec-hHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCe
Confidence 9998 68999999998621 1 1347999999999986578999999999999 9999999
Q ss_pred EEEEcCCCcccccCcee
Q 018958 328 MKIVRDEGLCGIGTRSS 344 (348)
Q Consensus 328 ~~i~~~~~~Cgi~~~~~ 344 (348)
|||+|+.|+|||++.++
T Consensus 439 fRI~RG~N~CGIes~~v 455 (548)
T PTZ00364 439 RKIARGVNAYNIESEVV 455 (548)
T ss_pred EEEEcCCCcccccceee
Confidence 99999999999999987
No 13
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=1.7e-50 Score=351.70 Aligned_cols=167 Identities=56% Similarity=1.127 Sum_probs=149.9
Q ss_pred CCCceecccCCCCCcccCCCCCcchHHHHHHHHHHHHHHHhcCCcccCCHHHHhhhcCCCCCCCCCCChHHHHHHHHHcC
Q 018958 136 VPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTNGNNGCLGGSREKAFAYIIQNQ 215 (348)
Q Consensus 136 lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~~~~gc~GG~~~~a~~~~~~~~ 215 (348)
||++||||+.++++||+|||.||+|||||+++++|+++++++++.++||+|+|++|....+.||+||.+..|++|+.++.
T Consensus 1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~~~~gC~GG~~~~a~~~~~~~~ 80 (174)
T smart00645 1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTGGNNGCNGGLPDNAFEYIKKNG 80 (174)
T ss_pred CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCCCCCCCCCcCHHHHHHHHHHcC
Confidence 69999999999999999999999999999999999999999998999999999999874356999999999999998755
Q ss_pred CccCCCCCCCCCCCCCCCCCCCCcceeecceEecCCccHHHHHHHHHcCCeEEEEEecchhhccccCceEeCC-CCC-CC
Q 018958 216 GIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPSGDEQALLKAVSMQPVSIAIAAYSTEFQSYKEGIFNGV-CGT-QL 293 (348)
Q Consensus 216 Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~y~~~~~~~~~~ik~al~~gPV~v~~~~~~~~f~~y~~Giy~~~-~~~-~~ 293 (348)
|+++|++|||.. ++.+.+. +|+.|++|||+.+ |.. .+
T Consensus 81 Gi~~e~~~PY~~---------------------------------------~~~~~~~--~f~~Y~~Gi~~~~~~~~~~~ 119 (174)
T smart00645 81 GLETESCYPYTG---------------------------------------SVAIDAS--DFQFYKSGIYDHPGCGSGTL 119 (174)
T ss_pred CcccccccCccc---------------------------------------EEEEEcc--cccCCcCeEECCCCCCCCcc
Confidence 999999999975 4555554 6999999999985 764 37
Q ss_pred CeEEEEEEEeecCCCccEEEEEcCCCCCCCCCceEEEEcCC-CcccccCce
Q 018958 294 DHAVTIVGFGTTEDGANYWLIKNSWGNTWGDAGYMKIVRDE-GLCGIGTRS 343 (348)
Q Consensus 294 ~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~-~~Cgi~~~~ 343 (348)
+|+|+|||||.+.+|++|||||||||+.||++|||||+|+. |.|||+...
T Consensus 120 ~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~~ 170 (174)
T smart00645 120 DHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASV 170 (174)
T ss_pred cEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceeee
Confidence 99999999998657889999999999999999999999997 999996544
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=6e-47 Score=340.64 Aligned_cols=192 Identities=35% Similarity=0.637 Sum_probs=167.4
Q ss_pred ceecccCCCCCcccCCCCCcchHHHHHHHHHHHHHHHhcC--CcccCCHHHHhhhcCCC----CCCCCCCChHHHHH-HH
Q 018958 139 SLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSG--NLIQLSEQQLLDCSTNG----NNGCLGGSREKAFA-YI 211 (348)
Q Consensus 139 ~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~lE~~~~~~~~--~~~~LS~q~l~dc~~~~----~~gc~GG~~~~a~~-~~ 211 (348)
.+|||+.+ ++||+|||.||+|||||+++++|++++++.+ +.++||+|+|++|.... ..+|.||.+..++. ++
T Consensus 1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~ 79 (223)
T cd02619 1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLV 79 (223)
T ss_pred CCcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHH
Confidence 48999998 9999999999999999999999999999987 78999999999998762 36999999999998 66
Q ss_pred HHcCCccCCCCCCCCCCCCCCCCC----CCCcceeecceEecCCccHHHHHHHHH-cCCeEEEEEecchhhccccCceEe
Q 018958 212 IQNQGIATEDEYPYQAVPGTCSAA----QKPAAAKISNYEEVPSGDEQALLKAVS-MQPVSIAIAAYSTEFQSYKEGIFN 286 (348)
Q Consensus 212 ~~~~Gi~~e~~yPY~~~~~~C~~~----~~~~~~~i~~y~~~~~~~~~~ik~al~-~gPV~v~~~~~~~~f~~y~~Giy~ 286 (348)
.. .|+++|++|||......|... ......++..|..+...++++||++|. .|||++++.+. ..|..|++|++.
T Consensus 80 ~~-~Gi~~e~~~Py~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~-~~~~~~~~~~~~ 157 (223)
T cd02619 80 AL-KGIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVY-SGFDRLKEGIIY 157 (223)
T ss_pred HH-cCCCccccCCCCCCCCCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcc-cchhcccCcccc
Confidence 65 599999999999987776532 344567889999988777899999998 69999999998 799999999873
Q ss_pred -----C-CC-CCCCCeEEEEEEEeecC-CCccEEEEEcCCCCCCCCCceEEEEcC
Q 018958 287 -----G-VC-GTQLDHAVTIVGFGTTE-DGANYWLIKNSWGNTWGDAGYMKIVRD 333 (348)
Q Consensus 287 -----~-~~-~~~~~Hav~iVGyg~~~-~g~~ywivkNSWG~~WG~~Gy~~i~~~ 333 (348)
. .+ ...++|||+|||||++. .+++|||||||||+.||++||+||+++
T Consensus 158 ~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~ 212 (223)
T cd02619 158 EEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYE 212 (223)
T ss_pred ccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehh
Confidence 2 12 35679999999999872 288999999999999999999999997
No 15
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=377.99 Aligned_cols=199 Identities=26% Similarity=0.489 Sum_probs=161.1
Q ss_pred CCcccCCCCCcchHHHHHHHHHHHHHHHhcCCcccCCHHHHhhhcCC-CCCCCCCCChH-HHHHHHHHcCCccCCCCCCC
Q 018958 148 VTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQLLDCSTN-GNNGCLGGSRE-KAFAYIIQNQGIATEDEYPY 225 (348)
Q Consensus 148 v~pV~dQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l~dc~~~-~~~gc~GG~~~-~a~~~~~~~~Gi~~e~~yPY 225 (348)
..||||||.||+|||||+++++|++++++++..+.||+|+|+||+.. ++.||.||+.. .++.|+.+++|+++|++|||
T Consensus 544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPY 623 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLY 623 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCC
Confidence 47899999999999999999999999999999999999999999864 46899999754 56688887766899999999
Q ss_pred CC--CCCCCCCCCC------------------CcceeecceEecCCc----c----HHHHHHHHH-cCCeEEEEEecchh
Q 018958 226 QA--VPGTCSAAQK------------------PAAAKISNYEEVPSG----D----EQALLKAVS-MQPVSIAIAAYSTE 276 (348)
Q Consensus 226 ~~--~~~~C~~~~~------------------~~~~~i~~y~~~~~~----~----~~~ik~al~-~gPV~v~~~~~~~~ 276 (348)
.. ..+.|+.... .....+.+|..+... + ++.|+++|+ +|||+|+|++. +
T Consensus 624 t~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs--d 701 (1004)
T PTZ00462 624 NYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAE--N 701 (1004)
T ss_pred ccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEee--h
Confidence 75 4567874311 012234566655431 1 367888998 69999999986 6
Q ss_pred hcccc-CceEeCC-CC-CCCCeEEEEEEEeec----CCCccEEEEEcCCCCCCCCCceEEEEc-CCCcccccCceeeeeC
Q 018958 277 FQSYK-EGIFNGV-CG-TQLDHAVTIVGFGTT----EDGANYWLIKNSWGNTWGDAGYMKIVR-DEGLCGIGTRSSYPLA 348 (348)
Q Consensus 277 f~~y~-~Giy~~~-~~-~~~~Hav~iVGyg~~----~~g~~ywivkNSWG~~WG~~Gy~~i~~-~~~~Cgi~~~~~~p~~ 348 (348)
|+.|. +|||... |+ ..++|||+|||||.+ ..+++|||||||||+.||++|||||.| +.+.|||+....+|+|
T Consensus 702 f~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n~CGin~i~t~~~f 781 (1004)
T PTZ00462 702 VLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCEDNFIHSVVIF 781 (1004)
T ss_pred HHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCCCCCccchheeeeeE
Confidence 88885 8986654 87 457999999999974 136799999999999999999999998 6899999987777764
No 16
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=3.3e-45 Score=330.15 Aligned_cols=262 Identities=28% Similarity=0.525 Sum_probs=206.6
Q ss_pred HHHHHHccCCCCceEEE-cccCCCCCHHHHHHHHcccCCCCCCCCCCCCccccccCCCC-CCCCCceecccC--CCCCcc
Q 018958 76 EYIEKANKEGNRTYKLG-TNQFSDLTNDEFRALYTGYKMPSPSHRSTTSSTFKYQNLSM-TDVPTSLDWRDK--GAVTPI 151 (348)
Q Consensus 76 ~~I~~~N~~~~~s~~~g-~N~FsD~t~eE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lP~~~Dwr~~--g~v~pV 151 (348)
++|+++|. ++.+|+++ ..+|..||.++-.+..+|..+|......+.. . +..+.+ .+||+.||-|++ +++.|+
T Consensus 151 d~iE~in~-G~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv~nMNE--i-~~~l~p~~~LPE~F~As~KWp~liH~p 226 (470)
T KOG1544|consen 151 DMIEAINQ-GNYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSVMNMNE--I-YTVLNPGEVLPEAFEASEKWPNLIHEP 226 (470)
T ss_pred HHHHHHhc-CCccccccchhhhhcccccccceeeecccCchhhhhhHHh--H-hhccCcccccchhhhhhhcCCccccCc
Confidence 57889997 56899987 6799999999987777887666543211111 1 011111 489999999987 899999
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHHhcCC--cccCCHHHHhhhcCCCCCCCCCCChHHHHHHHHHcCCccCCCCCCCCCC-
Q 018958 152 KNQKECGCCWAFAAVAAVEGITKIRSGN--LIQLSEQQLLDCSTNGNNGCLGGSREKAFAYIIQNQGIATEDEYPYQAV- 228 (348)
Q Consensus 152 ~dQg~cGsCwAfA~~~~lE~~~~~~~~~--~~~LS~q~l~dc~~~~~~gc~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~- 228 (348)
.|||+|++.|||+++++...+++|++.. ...||+|+|++|.....+||.||....|+-|+.+. |+|...||||...
T Consensus 227 lDQgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~gG~lDRAWWYlRKr-GvVsdhCYP~~~dQ 305 (470)
T KOG1544|consen 227 LDQGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRGGRLDRAWWYLRKR-GVVSDHCYPFSGDQ 305 (470)
T ss_pred cccCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhhhhccCccCcccchheeeecc-cccccccccccCCC
Confidence 9999999999999999999999987643 35799999999998778999999999999999886 9999999999752
Q ss_pred ---CCCC------------------CCC--CCCcceeecceEecCCccHHHHHHHHH-cCCeEEEEEecchhhccccCce
Q 018958 229 ---PGTC------------------SAA--QKPAAAKISNYEEVPSGDEQALLKAVS-MQPVSIAIAAYSTEFQSYKEGI 284 (348)
Q Consensus 229 ---~~~C------------------~~~--~~~~~~~i~~y~~~~~~~~~~ik~al~-~gPV~v~~~~~~~~f~~y~~Gi 284 (348)
.+.| ... .....++++.-+.+. .++++|++.|. +|||.+.|.|- ++|..|++||
T Consensus 306 ~~~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVS-SnE~eImkElM~NGPVQA~m~VH-EDFF~YkgGi 383 (470)
T KOG1544|consen 306 AGPAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVS-SNEKEIMKELMENGPVQALMEVH-EDFFLYKGGI 383 (470)
T ss_pred CCCCCCceeeccccCcccccccCcCCCcccccCceeeecCCeecc-CCHHHHHHHHHhCCChhhhhhhh-hhhhhhccce
Confidence 2233 221 111233444444454 57888888886 99999999887 9999999999
Q ss_pred EeCCCC---------CCCCeEEEEEEEeecC--CC--ccEEEEEcCCCCCCCCCceEEEEcCCCcccccCcee
Q 018958 285 FNGVCG---------TQLDHAVTIVGFGTTE--DG--ANYWLIKNSWGNTWGDAGYMKIVRDEGLCGIGTRSS 344 (348)
Q Consensus 285 y~~~~~---------~~~~Hav~iVGyg~~~--~g--~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~ 344 (348)
|.+... ..+.|+|.|.|||++. .| .+|||..||||+.|||+|||||-|+.|.|.|++.+.
T Consensus 384 Y~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNecdIEsfvI 456 (470)
T KOG1544|consen 384 YSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNECDIESFVI 456 (470)
T ss_pred eeccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccccchhhhHhhh
Confidence 998521 2468999999999862 33 489999999999999999999999999999998754
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.2e-31 Score=243.40 Aligned_cols=194 Identities=28% Similarity=0.455 Sum_probs=134.8
Q ss_pred CCCCceecccCCCCCcccCCCCCcchHHHHHHHHHHHHHHHhcCCcccCCHHHH-----hhhcCCCCC-CCCCCChHHHH
Q 018958 135 DVPTSLDWRDKGAVTPIKNQKECGCCWAFAAVAAVEGITKIRSGNLIQLSEQQL-----LDCSTNGNN-GCLGGSREKAF 208 (348)
Q Consensus 135 ~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~lE~~~~~~~~~~~~LS~q~l-----~dc~~~~~~-gc~GG~~~~a~ 208 (348)
.+|+.||||+.|.|+||||||.||+||||++++++|+.+.-.. ..++|+..+ +.|...... --+||....+.
T Consensus 98 s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~~ 175 (372)
T COG4870 98 SLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGGNADMSA 175 (372)
T ss_pred cchhheeeeccCCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCCcccccc
Confidence 5899999999999999999999999999999999998765433 334454433 222221111 13478888888
Q ss_pred HHHHHcCCccCCCCCCCCCCCCCCCCCCCCcceeecceEecCC----ccHHHHHHHHH-cCCeEEE--EEecchhhcccc
Q 018958 209 AYIIQNQGIATEDEYPYQAVPGTCSAAQKPAAAKISNYEEVPS----GDEQALLKAVS-MQPVSIA--IAAYSTEFQSYK 281 (348)
Q Consensus 209 ~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~y~~~~~----~~~~~ik~al~-~gPV~v~--~~~~~~~f~~y~ 281 (348)
.|+.+..|.+.|.+-||......|... .+...++..-..++. -+...|++++. .|-+... |++. .+....
T Consensus 176 a~l~e~sgpv~et~d~y~~~s~~~~~~-~p~~k~~~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~--~~~~~~ 252 (372)
T COG4870 176 AYLTEWSGPVYETDDPYSENSYFSPTN-LPVTKHVQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDAT--NSLGIC 252 (372)
T ss_pred ccccccCCcchhhcCccccccccCCcC-CchhhccccceecccchhhhcccchHHHHhhhccccceeEEecc--cccccc
Confidence 899999999999999999876655542 122233333333332 12333666665 5655433 4444 333333
Q ss_pred CceEeCCCCCCCCeEEEEEEEeec---------CCCccEEEEEcCCCCCCCCCceEEEEcC
Q 018958 282 EGIFNGVCGTQLDHAVTIVGFGTT---------EDGANYWLIKNSWGNTWGDAGYMKIVRD 333 (348)
Q Consensus 282 ~Giy~~~~~~~~~Hav~iVGyg~~---------~~g~~ywivkNSWG~~WG~~Gy~~i~~~ 333 (348)
-+.|........+|||+||||+|. +.|.++||||||||++||++|||||++.
T Consensus 253 ~~~~~~~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~ 313 (372)
T COG4870 253 IPYPYVDSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYY 313 (372)
T ss_pred cCCCCCCccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEee
Confidence 344444334678999999999985 2467899999999999999999999998
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.91 E-value=8.3e-24 Score=205.85 Aligned_cols=182 Identities=24% Similarity=0.427 Sum_probs=128.5
Q ss_pred CcccCCCCCcchHHHHHHHHHHHHHHHh-cCCcccCCHHHHhh----------------hcCC-----------CCCCCC
Q 018958 149 TPIKNQKECGCCWAFAAVAAVEGITKIR-SGNLIQLSEQQLLD----------------CSTN-----------GNNGCL 200 (348)
Q Consensus 149 ~pV~dQg~cGsCwAfA~~~~lE~~~~~~-~~~~~~LS~q~l~d----------------c~~~-----------~~~gc~ 200 (348)
.||+||++-|.||.||+...+++.+.++ +.+.++||+.++.. +... .....+
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~D 134 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQND 134 (437)
T ss_pred CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCC
Confidence 4899999999999999999999988774 45679999987654 2211 245678
Q ss_pred CCChHHHHHHHHHcCCccCCCCCCCCCC---------------------------CCC----------------------
Q 018958 201 GGSREKAFAYIIQNQGIATEDEYPYQAV---------------------------PGT---------------------- 231 (348)
Q Consensus 201 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~---------------------------~~~---------------------- 231 (348)
||....+...+.+ +|+++++.||-+.. .+.
T Consensus 135 GGqw~m~~~li~K-YGvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~~ 213 (437)
T cd00585 135 GGQWDMLVNLIEK-YGLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILAI 213 (437)
T ss_pred CCchHHHHHHHHH-cCCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998877 59999999984310 000
Q ss_pred CC---CC-------C-----------CCc----c---eeecceEec---CC---------------------------cc
Q 018958 232 CS---AA-------Q-----------KPA----A---AKISNYEEV---PS---------------------------GD 253 (348)
Q Consensus 232 C~---~~-------~-----------~~~----~---~~i~~y~~~---~~---------------------------~~ 253 (348)
|- +. . ++. . ....+|..+ |. -.
T Consensus 214 ~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y~Nvp 293 (437)
T cd00585 214 ALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILYLNVP 293 (437)
T ss_pred HcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceEEecC
Confidence 00 00 0 000 0 001111111 00 02
Q ss_pred HHHHH----HHHH-cCCeEEEEEecchhhccccCceEeCC----------------------CCCCCCeEEEEEEEeecC
Q 018958 254 EQALL----KAVS-MQPVSIAIAAYSTEFQSYKEGIFNGV----------------------CGTQLDHAVTIVGFGTTE 306 (348)
Q Consensus 254 ~~~ik----~al~-~gPV~v~~~~~~~~f~~y~~Giy~~~----------------------~~~~~~Hav~iVGyg~~~ 306 (348)
.+.++ ++|. .+||.+++++. .|..|++||++.. |.+..+|||+|||||.+.
T Consensus 294 ~d~l~~~~~~~L~~g~pV~~g~Dv~--~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~~D~ 371 (437)
T cd00585 294 MDVLKKAAIAQLKDGEPVWFGCDVG--KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVDLDE 371 (437)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEcC--hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEEecC
Confidence 34444 4566 56999999997 5779999999653 224468999999999876
Q ss_pred CCc-cEEEEEcCCCCCCCCCceEEEEcC
Q 018958 307 DGA-NYWLIKNSWGNTWGDAGYMKIVRD 333 (348)
Q Consensus 307 ~g~-~ywivkNSWG~~WG~~Gy~~i~~~ 333 (348)
+|+ .||+||||||+.||++||++|+++
T Consensus 372 ~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 372 DGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred CCCcceEEEEcccCCCCCCCcceehhHH
Confidence 676 699999999999999999999987
No 19
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.73 E-value=1e-17 Score=118.88 Aligned_cols=58 Identities=53% Similarity=0.826 Sum_probs=51.9
Q ss_pred HHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHccCCCCceEEEcccCCCCCHHHH
Q 018958 47 HEKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKANKEGNRTYKLGTNQFSDLTNDEF 104 (348)
Q Consensus 47 f~~f~~~~~k~Y~~~~E~~~R~~~f~~n~~~I~~~N~~~~~s~~~g~N~FsD~t~eE~ 104 (348)
|++|+++|+|+|.+.+|+..|+++|.+|+++|.+||+.++.+|++|+|+|||||++||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence 8999999999999999999999999999999999997677899999999999999997
No 20
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.71 E-value=2.1e-16 Score=154.19 Aligned_cols=182 Identities=26% Similarity=0.446 Sum_probs=107.5
Q ss_pred CcccCCCCCcchHHHHHHHHHHHHHHHhcC-CcccCCHHHHh----------------hhcCC-----------CCCCCC
Q 018958 149 TPIKNQKECGCCWAFAAVAAVEGITKIRSG-NLIQLSEQQLL----------------DCSTN-----------GNNGCL 200 (348)
Q Consensus 149 ~pV~dQg~cGsCwAfA~~~~lE~~~~~~~~-~~~~LS~q~l~----------------dc~~~-----------~~~gc~ 200 (348)
.||.||..-|.||.||+...++..+.++.+ +.++||+.++. ++... .....+
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~D 135 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSD 135 (438)
T ss_dssp -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S
T ss_pred CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCC
Confidence 499999999999999999999999888765 67899998764 33221 134578
Q ss_pred CCChHHHHHHHHHcCCccCCCCCCCCCC---------------------------C------------------------
Q 018958 201 GGSREKAFAYIIQNQGIATEDEYPYQAV---------------------------P------------------------ 229 (348)
Q Consensus 201 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~---------------------------~------------------------ 229 (348)
||....+...+.+ +|+|+.+.||-+.. .
T Consensus 136 GGqw~~~~nli~K-YGvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~ 214 (438)
T PF03051_consen 136 GGQWDMVVNLIKK-YGVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAI 214 (438)
T ss_dssp -B-HHHHHHHHHH-H---BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHH-cCcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888887776 59999999984320 0
Q ss_pred --CCCCCC------CCCc------------------ceeecceEec---C-------------C--------------cc
Q 018958 230 --GTCSAA------QKPA------------------AAKISNYEEV---P-------------S--------------GD 253 (348)
Q Consensus 230 --~~C~~~------~~~~------------------~~~i~~y~~~---~-------------~--------------~~ 253 (348)
|.+... .+.. .....+|..+ | . -.
T Consensus 215 ~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylNvp 294 (438)
T PF03051_consen 215 YLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLNVP 294 (438)
T ss_dssp HH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE--
T ss_pred HcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEeccC
Confidence 000000 0000 0011112111 0 0 01
Q ss_pred HHHHHH----HHHcC-CeEEEEEecchhhccccCceEeCCC----------------------CCCCCeEEEEEEEeecC
Q 018958 254 EQALLK----AVSMQ-PVSIAIAAYSTEFQSYKEGIFNGVC----------------------GTQLDHAVTIVGFGTTE 306 (348)
Q Consensus 254 ~~~ik~----al~~g-PV~v~~~~~~~~f~~y~~Giy~~~~----------------------~~~~~Hav~iVGyg~~~ 306 (348)
.+.|++ +|..| ||-.+.++. . +...+.||.+... .+..+|||+|||.+.+.
T Consensus 295 id~lk~~~i~~Lk~G~~VwfgcDV~-k-~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~ 372 (438)
T PF03051_consen 295 IDELKDAAIKSLKAGYPVWFGCDVG-K-FFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDE 372 (438)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEETT-T-TEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-T
T ss_pred HHHHHHHHHHHHHcCCcEEEeccCC-c-cccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEecc
Confidence 344444 45555 999999997 3 4566888876531 02347999999999977
Q ss_pred CCc-cEEEEEcCCCCCCCCCceEEEEcC
Q 018958 307 DGA-NYWLIKNSWGNTWGDAGYMKIVRD 333 (348)
Q Consensus 307 ~g~-~ywivkNSWG~~WG~~Gy~~i~~~ 333 (348)
+|+ .+|+|+||||+..|.+|||.|+.+
T Consensus 373 ~g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 373 DGKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp TSSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred CCCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 787 699999999999999999999864
No 21
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.58 E-value=2.3e-15 Score=106.27 Aligned_cols=57 Identities=51% Similarity=0.885 Sum_probs=54.1
Q ss_pred HHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHccCCCCceEEEcccCCCCCHHH
Q 018958 47 HEKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKANKEGNRTYKLGTNQFSDLTNDE 103 (348)
Q Consensus 47 f~~f~~~~~k~Y~~~~E~~~R~~~f~~n~~~I~~~N~~~~~s~~~g~N~FsD~t~eE 103 (348)
|++|+.+|+|.|.+.+|+..|+.+|.+|++.|..||..+..+|++|+|+|+|||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence 689999999999999999999999999999999999887789999999999999886
No 22
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.91 E-value=1e-08 Score=94.71 Aligned_cols=77 Identities=26% Similarity=0.462 Sum_probs=55.7
Q ss_pred HHHHHHHH----HcC-CeEEEEEecchhhccccCceEeCC-C------C---------------CCCCeEEEEEEEeecC
Q 018958 254 EQALLKAV----SMQ-PVSIAIAAYSTEFQSYKEGIFNGV-C------G---------------TQLDHAVTIVGFGTTE 306 (348)
Q Consensus 254 ~~~ik~al----~~g-PV~v~~~~~~~~f~~y~~Giy~~~-~------~---------------~~~~Hav~iVGyg~~~ 306 (348)
.+.+|++. ..| +|=.+.++. -+..-+.||.+.. . + +-..|||+|.|.+.+.
T Consensus 297 me~lkkl~~~q~qagetVwFG~dvg--q~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~ 374 (444)
T COG3579 297 MERLKKLAIKQMQAGETVWFGCDVG--QLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDE 374 (444)
T ss_pred HHHHHHHHHHHHhcCCcEEeecCch--hhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhcccccc
Confidence 45566643 234 888888776 5666777775432 0 0 1126999999999876
Q ss_pred CCc-cEEEEEcCCCCCCCCCceEEEEc
Q 018958 307 DGA-NYWLIKNSWGNTWGDAGYMKIVR 332 (348)
Q Consensus 307 ~g~-~ywivkNSWG~~WG~~Gy~~i~~ 332 (348)
+|. --|.|.||||..=|.+|||-++-
T Consensus 375 ~g~p~rwkVENSWG~d~G~~GyfvaSd 401 (444)
T COG3579 375 TGNPLRWKVENSWGKDVGKKGYFVASD 401 (444)
T ss_pred CCCceeeEeecccccccCCCceEeehH
Confidence 664 46999999999999999998863
No 23
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=97.33 E-value=0.00044 Score=64.40 Aligned_cols=77 Identities=22% Similarity=0.340 Sum_probs=53.9
Q ss_pred CCcccCCCCCcchHHHHHHHHHHHHHHHhcC-CcccCCHHHHhh--------------------hcCC---------CCC
Q 018958 148 VTPIKNQKECGCCWAFAAVAAVEGITKIRSG-NLIQLSEQQLLD--------------------CSTN---------GNN 197 (348)
Q Consensus 148 v~pV~dQg~cGsCwAfA~~~~lE~~~~~~~~-~~~~LS~q~l~d--------------------c~~~---------~~~ 197 (348)
-+||.||.+-|-||.|+.+..+---+.++-+ ..+.||..+|.- |-.. .+.
T Consensus 62 ~~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP 141 (457)
T KOG4128|consen 62 RQPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNP 141 (457)
T ss_pred CcccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCC
Confidence 3699999999999999999987654444433 346788776531 1111 133
Q ss_pred CCCCCChHHHHHHHHHcCCccCCCCCCC
Q 018958 198 GCLGGSREKAFAYIIQNQGIATEDEYPY 225 (348)
Q Consensus 198 gc~GG~~~~a~~~~~~~~Gi~~e~~yPY 225 (348)
.-+||....-+..+++ +|+.+..|||-
T Consensus 142 ~~DGGqw~MfvNlVkK-YGviPKkcy~~ 168 (457)
T KOG4128|consen 142 VPDGGQWQMFVNLVKK-YGVIPKKCYLH 168 (457)
T ss_pred CCCCchHHHHHHHHHH-hCCCcHHhccc
Confidence 4578887777777766 59999999963
No 24
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=97.05 E-value=0.0095 Score=48.71 Aligned_cols=57 Identities=18% Similarity=0.354 Sum_probs=33.6
Q ss_pred ccHHHHHHHHHcC-CeEEEEEecchhhccccCceEeCCCCCCCCeEEEEEEEeecCCCccEEEEEcCC
Q 018958 252 GDEQALLKAVSMQ-PVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSW 318 (348)
Q Consensus 252 ~~~~~ik~al~~g-PV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSW 318 (348)
.+.+.|+++|..| ||.+.+....... .+..+ .....+|.|+|+||+++ . +++|..+|
T Consensus 87 ~~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~---~~~~~~H~vvi~Gy~~~---~-~~~v~DP~ 144 (144)
T PF13529_consen 87 ASFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGY---DGTYGGHYVVIIGYDED---G-YVYVNDPW 144 (144)
T ss_dssp S-HHHHHHHHHTT--EEEEEETTSS-----TTEEE---EE-TTEEEEEEEEE-SS---E--EEEE-TT
T ss_pred CcHHHHHHHHHCCCcEEEEEEcccccC---CCCCc---CCCcCCEEEEEEEEeCC---C-EEEEeCCC
Confidence 4678999999865 9999986431011 11111 12346899999999875 2 78888877
No 25
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=96.52 E-value=0.027 Score=48.23 Aligned_cols=120 Identities=20% Similarity=0.292 Sum_probs=68.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHh--------cCCcccCCHHHHhhhcCCCCCCCCCCChHHHHHHHHHcCCccCCCCCC
Q 018958 153 NQKECGCCWAFAAVAAVEGITKIR--------SGNLIQLSEQQLLDCSTNGNNGCLGGSREKAFAYIIQNQGIATEDEYP 224 (348)
Q Consensus 153 dQg~cGsCwAfA~~~~lE~~~~~~--------~~~~~~LS~q~l~dc~~~~~~gc~GG~~~~a~~~~~~~~Gi~~e~~yP 224 (348)
.||.-+=|-+||.+++|-...... ..-...+|+++|..++. .+...+.|.+.. |...
T Consensus 18 tQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~---------~~~~~i~y~ks~-g~~~----- 82 (175)
T PF05543_consen 18 TQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSL---------TPNQMIKYAKSQ-GRNP----- 82 (175)
T ss_dssp --SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B----------HHHHHHHHHHT-TEEE-----
T ss_pred ccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCC---------CHHHHHHHHHHc-Ccch-----
Confidence 489999999999999887542111 11235677777766642 345677776543 4321
Q ss_pred CCCCCCCCCCCCCCcceeecceEecCCccHHHHHHHHH-cCCeEEEEEecchhhccccCceEeCCCCCCCCeEEEEEEEe
Q 018958 225 YQAVPGTCSAAQKPAAAKISNYEEVPSGDEQALLKAVS-MQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFG 303 (348)
Q Consensus 225 Y~~~~~~C~~~~~~~~~~i~~y~~~~~~~~~~ik~al~-~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg 303 (348)
.+..-. .+.+++++.+. +.|+.+...... ...+...+|||+||||-
T Consensus 83 --------------------~~~n~~-~s~~eV~~~~~~nk~i~i~~~~v~------------~~~~~~~gHAlavvGya 129 (175)
T PF05543_consen 83 --------------------QYNNRM-PSFDEVKKLIDNNKGIAILADRVE------------QTNGPHAGHALAVVGYA 129 (175)
T ss_dssp --------------------EEECS----HHHHHHHHHTT-EEEEEEEETT------------SCTTB--EEEEEEEEEE
T ss_pred --------------------hHhcCC-CCHHHHHHHHHcCCCeEEEecccc------------cCCCCccceeEEEEeee
Confidence 111100 15678888887 567777665431 01234578999999998
Q ss_pred ecCCCccEEEEEcCCCC
Q 018958 304 TTEDGANYWLIKNSWGN 320 (348)
Q Consensus 304 ~~~~g~~ywivkNSWG~ 320 (348)
.-.+|.++.++=|=|-.
T Consensus 130 ~~~~g~~~y~~WNPW~~ 146 (175)
T PF05543_consen 130 KPNNGQKTYYFWNPWWN 146 (175)
T ss_dssp EETTSEEEEEEE-TT-S
T ss_pred ecCCCCeEEEEeCCccC
Confidence 76578999999888854
No 26
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=96.50 E-value=0.0027 Score=41.27 Aligned_cols=36 Identities=31% Similarity=0.460 Sum_probs=22.7
Q ss_pred HHHHHHHccCCCCceEEEcccCCCCCHHHHHHHHcccCC
Q 018958 75 LEYIEKANKEGNRTYKLGTNQFSDLTNDEFRALYTGYKM 113 (348)
Q Consensus 75 ~~~I~~~N~~~~~s~~~g~N~FsD~t~eE~~~~~~~~~~ 113 (348)
-++|+.+|+. +.+|++|.| |.+.|.++++.+ +|..+
T Consensus 3 de~I~~IN~~-~~tWkAG~N-F~~~~~~~ik~L-lGv~~ 38 (41)
T PF08127_consen 3 DEFIDYINSK-NTTWKAGRN-FENTSIEYIKRL-LGVLP 38 (41)
T ss_dssp HHHHHHHHHC-T-SEEE-----SSB-HHHHHHC-S-B-T
T ss_pred HHHHHHHHcC-CCcccCCCC-CCCCCHHHHHHH-cCCCC
Confidence 3689999997 689999999 899999888864 56554
No 27
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=88.76 E-value=1.1 Score=42.09 Aligned_cols=55 Identities=16% Similarity=0.409 Sum_probs=35.6
Q ss_pred HHHHHHHHHcC-CeEEEEEecchhhccccCceEeCCCCCCCCeEEEEEEEeecCCCccEEEEEc
Q 018958 254 EQALLKAVSMQ-PVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKN 316 (348)
Q Consensus 254 ~~~ik~al~~g-PV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~~~g~~ywivkN 316 (348)
.+.|+++|..| ||.+.++.+ +..|...-| .....+|.|+|+||+++ ++.+.++-+
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~---~lpy~~~~~---~~~~~~H~i~v~G~d~~--~~~~~v~D~ 133 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY---YLPYRPNYY---KKHHADHYIVVYGYDEE--EDVFYVSDP 133 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc---cCCCCcccc---ccccCCcEEEEEEEeCC--CCEEEEEcC
Confidence 35677788866 999998766 444443322 12345899999999864 345666533
No 28
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.75 E-value=1.9 Score=37.21 Aligned_cols=52 Identities=21% Similarity=0.375 Sum_probs=37.4
Q ss_pred EecCCccHHHHHHHHHc-CCeEEEEEecchhhccccCceEeCCCCCCCCeEEEEEEEeecCCCccEEEEEcCCC
Q 018958 247 EEVPSGDEQALLKAVSM-QPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWG 319 (348)
Q Consensus 247 ~~~~~~~~~~ik~al~~-gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG 319 (348)
..++..+..+|+..|.+ .||.+-... |..| .-|+|+|+||++. ++..-++||
T Consensus 116 ~d~tGksl~~ik~ql~kg~PV~iw~T~----~~~~------------s~H~v~itgyDk~-----n~yynDpyG 168 (195)
T COG4990 116 VDLTGKSLSDIKGQLLKGRPVVIWVTN----FHSY------------SIHSVLITGYDKY-----NIYYNDPYG 168 (195)
T ss_pred ccCcCCcHHHHHHHHhcCCcEEEEEec----cccc------------ceeeeEeeccccc-----ceEeccccc
Confidence 34555789999999985 588776533 3332 3599999999875 666667775
No 29
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=76.43 E-value=37 Score=28.87 Aligned_cols=38 Identities=21% Similarity=0.269 Sum_probs=27.5
Q ss_pred cHHHHHHHHH-cCCeEEEEEecchhhccccCceEeCCCCCCCCeEEEEEEEeec
Q 018958 253 DEQALLKAVS-MQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTT 305 (348)
Q Consensus 253 ~~~~ik~al~-~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~ 305 (348)
+.+.+...|. +||+-++.... .+....|+++|.|-+.+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P---------------~~~~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAP---------------GDSWVAHASVITGIDGD 135 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCC---------------CCcceeeEEEEEeecCC
Confidence 5678888887 89999886544 12234699999998654
No 30
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=74.78 E-value=10 Score=33.83 Aligned_cols=58 Identities=16% Similarity=0.269 Sum_probs=34.0
Q ss_pred cHHHHHHHHH-cCCeEEEEEecchhhcc---ccCceEeC---C-C---CCCCCeEEEEEEEeecCCCccEEEEEc
Q 018958 253 DEQALLKAVS-MQPVSIAIAAYSTEFQS---YKEGIFNG---V-C---GTQLDHAVTIVGFGTTEDGANYWLIKN 316 (348)
Q Consensus 253 ~~~~ik~al~-~gPV~v~~~~~~~~f~~---y~~Giy~~---~-~---~~~~~Hav~iVGyg~~~~g~~ywivkN 316 (348)
+.++|...|. .||+.+-++.. ... -+.-.... . + ....+|=|+|+||+.. .+-++++|
T Consensus 112 s~~ei~~hl~~g~~aIvLVd~~---~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~---~~~~~yrd 180 (212)
T PF09778_consen 112 SIQEIIEHLSSGGPAIVLVDAS---LLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAA---TKEFEYRD 180 (212)
T ss_pred cHHHHHHHHhCCCcEEEEEccc---cccChhhcccccccccccccCCCCCccEEEEEEEeecCC---CCeEEEeC
Confidence 5788999998 45666666554 111 02222111 1 1 2457999999999865 33455555
No 31
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=71.33 E-value=14 Score=35.02 Aligned_cols=40 Identities=23% Similarity=0.499 Sum_probs=32.8
Q ss_pred CCeEEEEEEEeecCC--CccEEEEEcCCCC--C----------C--------------CCCceEEEEcC
Q 018958 293 LDHAVTIVGFGTTED--GANYWLIKNSWGN--T----------W--------------GDAGYMKIVRD 333 (348)
Q Consensus 293 ~~Hav~iVGyg~~~~--g~~ywivkNSWG~--~----------W--------------G~~Gy~~i~~~ 333 (348)
.+||-.|++.-.- + +.+...+||-||. . | .++|-|||+.+
T Consensus 235 ~~HaY~Vl~~~~~-~~~~~~lv~lrNPWg~~~w~G~ws~~~~~w~~~~~~~~~~~~~~~~dG~Fwm~~~ 302 (315)
T cd00044 235 KGHAYSVLDVREV-QEEGLRLLRLRNPWGVGEWWGGWSDDSSEWWVIDAERKKLLLSGKDDGEFWMSFE 302 (315)
T ss_pred cCcceEEeEEEEE-ccCceEEEEecCCccCCCccCCCCCCCchhccChHHHHHhcCCCCCCCEEEEEhH
Confidence 4899999999875 4 7889999999994 1 2 36899999876
No 32
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=60.89 E-value=26 Score=28.19 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=28.6
Q ss_pred HHHHHH-cCCeEEEEEecchhhccccCceEeCCCCCCCCeEEEEEEEeecCCCccEEEEEcCC
Q 018958 257 LLKAVS-MQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSW 318 (348)
Q Consensus 257 ik~al~-~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSW 318 (348)
+++.+. ..||.+.++.. ......+|.|+|+||+. .+..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~--------------~~~~~~gH~vVv~g~~~----~~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG--------------VSITPSGHAMVVIGYDR----KGNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC--------------cccCCCCeEEEEEEEcC----CCCEEEECCC
Confidence 667777 45998887541 01233679999999971 1235566665
No 33
>PF15052 TMEM169: TMEM169 protein family
Probab=36.14 E-value=16 Score=29.55 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=28.6
Q ss_pred eecccccccchhHHHHHHHHHHhhhhhhccCCCCchhHHHHHHHHHHH
Q 018958 6 ERSGSFKINTTPMFIIITLLVSCASQVVSSRSTHEQSVVEIHEKWMAQ 53 (348)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~f~~~ 53 (348)
|||-..||-..|++||+-=+.+.+.....+....-.++.=.|.+|.++
T Consensus 53 ers~~hKi~~cPlLIl~YP~lIv~~t~~LglYaa~~QlSw~~~~W~~~ 100 (133)
T PF15052_consen 53 ERSFWHKITVCPLLILFYPFLIVLVTLSLGLYAAFVQLSWSFGSWWNE 100 (133)
T ss_pred cceeeeeehhccHHHHHHHHHHHHHHHHHHHHHHhhheeeeHHHHHHH
Confidence 899999999999998764333333322222212233444457777654
No 34
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=35.65 E-value=43 Score=25.57 Aligned_cols=22 Identities=32% Similarity=0.223 Sum_probs=14.7
Q ss_pred ccccchhHHHHHHHHHHhhhhh
Q 018958 11 FKINTTPMFIIITLLVSCASQV 32 (348)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~ 32 (348)
+|.|...++.|++||++-.+++
T Consensus 3 ~Ktnlfl~lSLailLmIISSqv 24 (93)
T PF03058_consen 3 SKTNLFLCLSLAILLMIISSQV 24 (93)
T ss_pred chhhhHHHHHHHHHHHHHhhHH
Confidence 6888898888855555544434
No 35
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=34.29 E-value=61 Score=30.19 Aligned_cols=28 Identities=21% Similarity=0.550 Sum_probs=19.4
Q ss_pred CCeEEEEEEEeecC---CCccEEEEEcCCCC
Q 018958 293 LDHAVTIVGFGTTE---DGANYWLIKNSWGN 320 (348)
Q Consensus 293 ~~Hav~iVGyg~~~---~g~~ywivkNSWG~ 320 (348)
.+||-.|+++.... .+...-.+||-||.
T Consensus 213 ~~HaY~Vl~~~~~~~~~~~~~lv~LrNPwg~ 243 (298)
T PF00648_consen 213 PGHAYAVLDVREVNGNGEGHRLVKLRNPWGS 243 (298)
T ss_dssp TTS-EEEEEEEEEEETTEEEEEEEEE-TTSS
T ss_pred cceeEEEEEEEeeccccceeEEEEEcCCCcc
Confidence 58999999987641 12567889999984
No 36
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=31.90 E-value=2.3e+02 Score=24.65 Aligned_cols=49 Identities=29% Similarity=0.624 Sum_probs=28.9
Q ss_pred HHHHHHHH-cCCeEEEEEecchhhccccCceEeCCCCCCCCeEEEEEEEeecCCCccEEEEEcCCCCCCC--CCceEE
Q 018958 255 QALLKAVS-MQPVSIAIAAYSTEFQSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGNTWG--DAGYMK 329 (348)
Q Consensus 255 ~~ik~al~-~gPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG--~~Gy~~ 329 (348)
+.|+..|. ..||.+.-.... .+||.+|=||.. .+||-+ -|| || .+|||+
T Consensus 141 ~~i~~el~~~rPV~~~g~~~~------------------~GHawViDGy~~----~~~~H~--NwG--W~G~~nGyy~ 192 (192)
T PF01640_consen 141 DMIRNELDNGRPVLYSGNSKS------------------GGHAWVIDGYDS----DGYFHC--NWG--WGGSSNGYYR 192 (192)
T ss_dssp HHHHHHHHTT--EEEEEEETT------------------EEEEEEEEEEES----SSEEEE--E-S--STTTT-EEEE
T ss_pred HHHHHHHHcCCCEEEEEecCC------------------CCeEEEEcCccC----CCeEEE--eeC--ccCCCCCccC
Confidence 45677776 569876643320 179999999954 357755 454 44 568875
No 37
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=30.91 E-value=94 Score=29.49 Aligned_cols=26 Identities=23% Similarity=0.562 Sum_probs=21.5
Q ss_pred CCeEEEEEEEeecCCCcc--EEEEEcCCC
Q 018958 293 LDHAVTIVGFGTTEDGAN--YWLIKNSWG 319 (348)
Q Consensus 293 ~~Hav~iVGyg~~~~g~~--ywivkNSWG 319 (348)
.+||=.|++...- ++.+ ...+||-||
T Consensus 227 ~~HaYsVl~v~~~-~~~~~~Ll~lrNPWg 254 (318)
T smart00230 227 KGHAYSVTDVREV-QGRRQELLRLRNPWG 254 (318)
T ss_pred cCccEEEEEEEEE-ecCCeEEEEEECCCC
Confidence 4899999998764 4445 899999998
No 38
>PF13333 rve_2: Integrase core domain
Probab=28.15 E-value=1.6e+02 Score=19.54 Aligned_cols=46 Identities=26% Similarity=0.342 Sum_probs=28.4
Q ss_pred HHHHHHH--hCCccCChHHHHHHHHHHHHHHHHHHHHccCCCCceEEEcccCCCCCHHHHHHHH
Q 018958 47 HEKWMAQ--HGRSYKDELEKEMRLKIFKENLEYIEKANKEGNRTYKLGTNQFSDLTNDEFRALY 108 (348)
Q Consensus 47 f~~f~~~--~~k~Y~~~~E~~~R~~~f~~n~~~I~~~N~~~~~s~~~g~N~FsD~t~eE~~~~~ 108 (348)
|...|.+ |.+.|.|-+|- +..|+ +.|+-+|.+. ++ .||+.|+.+..
T Consensus 4 f~~lK~E~~~~~~~~t~eel--~~~I~----~YI~~yN~~R-------l~---~lsP~eyr~~~ 51 (52)
T PF13333_consen 4 FGTLKTEMLYRQKFKTREEL--KQAID----EYIDYYNNER-------LK---GLSPVEYRNQY 51 (52)
T ss_pred hHhhcchhcCCcccchHHHH--HHHHH----HHHHHhccCC-------CC---CcCHHHHHHhh
Confidence 4455555 66777765443 33333 3677888754 22 88999998754
No 39
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=24.62 E-value=3e+02 Score=20.43 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=38.3
Q ss_pred CCchhHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHccCC
Q 018958 38 THEQSVVEIHEKWMAQHGRSYKDELEKEMRLKIFKENLEYIEKANKEG 85 (348)
Q Consensus 38 ~~~~~~~~~f~~f~~~~~k~Y~~~~E~~~R~~~f~~n~~~I~~~N~~~ 85 (348)
.........=++|...++..| +...-..|+..+++..+.+..+-...
T Consensus 29 fk~~~w~~i~~~~~~~~~~~~-t~~qlknk~~~lk~~y~~~~~l~~~s 75 (96)
T PF12776_consen 29 FKKEGWNNIAEEFNEKTGLNY-TKKQLKNKWKTLKKDYRIWKELRNHS 75 (96)
T ss_pred cCHHHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345566777788888999999 47788999999999999999887654
No 40
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=23.42 E-value=1.9e+02 Score=27.61 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=30.7
Q ss_pred ccccchhHHHHHHHHHHhhhhhhccCCC--CchhHHHHHHHHHHHhCCccC
Q 018958 11 FKINTTPMFIIITLLVSCASQVVSSRST--HEQSVVEIHEKWMAQHGRSYK 59 (348)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~~f~~~~~k~Y~ 59 (348)
.++.++.++++.++.=|.++.++-+... +|....+.+++=+.++.++|.
T Consensus 4 ~qnvR~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn 54 (350)
T KOG4404|consen 4 RQNVRTLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYN 54 (350)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhC
Confidence 3677899998888888888766522211 234444555555556666665
No 41
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=22.48 E-value=84 Score=17.78 Aligned_cols=15 Identities=13% Similarity=0.403 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHhhh
Q 018958 16 TPMFIIITLLVSCAS 30 (348)
Q Consensus 16 ~~~~~~~~~~~~~~~ 30 (348)
+..++|++||++.+.
T Consensus 7 alivVLFILLiIvG~ 21 (24)
T PF09680_consen 7 ALIVVLFILLIIVGA 21 (24)
T ss_pred hhHHHHHHHHHHhcc
Confidence 455667777766543
No 42
>COG4871 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.62 E-value=58 Score=27.74 Aligned_cols=16 Identities=50% Similarity=0.966 Sum_probs=10.7
Q ss_pred cccCCCCCc--chHHHHH
Q 018958 150 PIKNQKECG--CCWAFAA 165 (348)
Q Consensus 150 pV~dQg~cG--sCwAfA~ 165 (348)
|--|=|.|| +|.|||.
T Consensus 135 P~tNCg~CGEqtCmaFAi 152 (193)
T COG4871 135 PQTNCGKCGEQTCMAFAI 152 (193)
T ss_pred CCCccccchhHHHHHHHH
Confidence 334556666 7899875
No 43
>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation [].
Probab=20.03 E-value=84 Score=17.22 Aligned_cols=12 Identities=33% Similarity=0.772 Sum_probs=9.3
Q ss_pred CCCHHHHHHHHc
Q 018958 98 DLTNDEFRALYT 109 (348)
Q Consensus 98 D~t~eE~~~~~~ 109 (348)
-++.++|+++++
T Consensus 9 p~SNddFrkmfl 20 (21)
T PF05391_consen 9 PKSNDDFRKMFL 20 (21)
T ss_pred ccchHHHHHHHc
Confidence 467889988876
Done!