BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018960
(348 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6YW64|DRB4_ORYSJ Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp.
japonica GN=DRB4 PE=2 SV=1
Length = 312
Score = 131 bits (329), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 80/199 (40%), Positives = 125/199 (62%), Gaps = 16/199 (8%)
Query: 2 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHR--KAAEQD 59
+K++LQE+ Q++ LP+Y + +G H KF+++V VDG ++S TF HR K AEQD
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSS--TFCHRRVKDAEQD 96
Query: 60 VAKIALECISKKIKDEG-----CPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALL 114
AK+A + + ++ + E LI+QD VF KSIL+E+ K + P YS ++E +
Sbjct: 97 AAKVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTEGSV 156
Query: 115 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAA 174
+VSS+ F G TYTG R+KK+AEQ AARA +++LL T + T +++I++SK KL A
Sbjct: 157 TPYVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSLLAT--NYTSMAKIVRSKEKLIRA 214
Query: 175 L-----NKVKESNYSTQKI 188
+ NK +SN + +K+
Sbjct: 215 ISPSGYNKGIDSNPTNKKL 233
>sp|Q0IV63|DRB7_ORYSJ Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp.
japonica GN=DRB7 PE=2 SV=1
Length = 473
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 101/172 (58%), Gaps = 3/172 (1%)
Query: 1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
+ K+RLQE+AQ++G+ P Y + EG H P F+++V ++ +Y S F +RKAAEQ
Sbjct: 33 VFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AKIALECISKKI-KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVS 119
A++AL I K I + P + Q+T CK++L E+A KMN +P+Y +S + L F+
Sbjct: 93 AEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAPFIC 151
Query: 120 SLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS-GSATILSEIIKSKGK 170
++ G+ Y G R+KK+AE AAR + + S GSA ++ I GK
Sbjct: 152 TVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGK 203
>sp|Q0IQN6|DRB8_ORYSJ Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp.
japonica GN=DRB8 PE=2 SV=1
Length = 424
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 101/172 (58%), Gaps = 3/172 (1%)
Query: 1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
+ K+RLQE+AQ++G+ P Y + EG H P F+++V ++ +Y S F +RKAAEQ
Sbjct: 33 VFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSA 92
Query: 61 AKIALECISKKI-KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVS 119
A++AL I K I + P + Q+T CK++L E+A KMN +P+Y +S + L F+
Sbjct: 93 AEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASGLAPFIC 151
Query: 120 SLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS-GSATILSEIIKSKGK 170
++ G+ Y G R+KK+AE AAR + + S GSA ++ I GK
Sbjct: 152 TVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGK 203
>sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp.
japonica GN=DRB3 PE=2 SV=1
Length = 437
Score = 108 bits (269), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 101/172 (58%), Gaps = 3/172 (1%)
Query: 1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
+ K+RLQE+AQ++G+ P Y + EG H P F+++V ++ +Y S FS+RKAAEQ
Sbjct: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
Query: 61 AKIALECISKKI-KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVS 119
A++AL I K I + P + Q+T CK++L E+A KMN +P+Y + + L F+
Sbjct: 95 AEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAPFLC 153
Query: 120 SLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS-GSATILSEIIKSKGK 170
++ G+ Y G R+KK+AE AAR + + S GSA ++ I GK
Sbjct: 154 TVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGK 205
>sp|O04492|DRB1_ARATH Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana
GN=DRB1 PE=1 SV=1
Length = 419
Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 91/153 (59%), Gaps = 7/153 (4%)
Query: 1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
+ K+RLQE+AQ+ +P PVY+ EG H F+++V +DGV Y S F +RKAAEQ
Sbjct: 15 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74
Query: 61 AKIALECISKKIKDEGCPLINQ---DTVFCKSILNEFAVKMNLELPAYSTRQSEALLPV- 116
A++AL ++K + C ++Q +T CK++L E+A KMN +P Y ++ E L V
Sbjct: 75 AEVALRELAKSSELSQC--VSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVT 132
Query: 117 -FVSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 148
F ++ G+ YTG R+KK+AE A R +
Sbjct: 133 QFTCTVEIGGIKYTGAATRTKKDAEISAGRTAL 165
>sp|Q0DKP4|DRB2_ORYSJ Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp.
japonica GN=DRB2 PE=2 SV=1
Length = 593
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 89/153 (58%), Gaps = 2/153 (1%)
Query: 1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G T+ SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60
Query: 61 AKIALECISKKIKDEGCPL-INQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 118
A++AL +SK+ + +T K++L E A + L+LP Y+T R PVF
Sbjct: 61 AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120
Query: 119 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151
++ G+T+TG PG++KK+A++ AA A L
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSEL 153
>sp|Q9SKN2|DRB2_ARATH Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana
GN=DRB2 PE=1 SV=1
Length = 434
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Query: 1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60
Query: 61 AKIALECISKKIKDEG-CPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 118
A++AL +S + I +T K++L E A ++ LP Y+T R PVF
Sbjct: 61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120
Query: 119 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151
++ G+T+TG+P ++KK+AE+ AA A +L
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSL 153
>sp|Q8GY79|DRB5_ARATH Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana
GN=DRB5 PE=1 SV=1
Length = 393
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 4/154 (2%)
Query: 1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
M+KN+LQE AQRS LP Y EG HAP+F+ASV+ +G + SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60
Query: 61 AKIALECISKKI--KDEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVF 117
A+++L +S ++ K ++++ ++ K++L E A + L+LP Y S R P F
Sbjct: 61 AEVSLNVLSSRVPSKSLTAKILDETGIY-KNLLQETAHRAGLDLPMYTSVRSGSCHFPGF 119
Query: 118 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151
++ G+T+TGE ++KK+AE+ AA A +L
Sbjct: 120 SCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSL 153
>sp|Q9LJF5|DRB3_ARATH Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana
GN=DRB3 PE=2 SV=1
Length = 359
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 4/154 (2%)
Query: 1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
M+KN+LQE AQRS LP Y EG HAP+F+ASV+ +G + SP S + AE
Sbjct: 1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60
Query: 61 AKIALECISKK--IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVF 117
A++AL +S K K ++++ ++ K++L E A + L+LP Y S R +P F
Sbjct: 61 AEVALSALSSKGPSKSLTARVLDETGIY-KNLLQETAHRAGLDLPVYTSVRSGPGHIPTF 119
Query: 118 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151
++ G+++ GE ++KK+AE+ AA A +L
Sbjct: 120 SCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSL 153
>sp|B7E321|DRB5_ORYSJ Double-stranded RNA-binding protein 5 OS=Oryza sativa subsp.
japonica GN=DRB5 PE=2 SV=1
Length = 404
Score = 92.4 bits (228), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 91/154 (59%), Gaps = 4/154 (2%)
Query: 1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G T+ P+ + + AE
Sbjct: 1 MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60
Query: 61 AKIALECISKKIKDEGCP--LINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 117
A++AL +S + ++++ V+ K++L E A + L+LP Y+T R PVF
Sbjct: 61 AEVALARLSLRGPSSSLTARVLDETGVY-KNLLQETAHRAGLKLPVYTTVRSGPGHSPVF 119
Query: 118 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151
S++ G+++ G+P ++KK AE+ AA A +L
Sbjct: 120 SSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSL 153
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 88 KSILNEFAVKMNLELPAY-STRQSEALLPVFVSSLVFNGVTYTGEPG-RSKKEAEQLAAR 145
K+ L E A + LP+Y TR+ P F +++ FNG T+ G + ++AE AA
Sbjct: 3 KNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAAAE 62
Query: 146 AVIRTLLVTSGSATILSEIIKSKG 169
+ L + S+++ + ++ G
Sbjct: 63 VALARLSLRGPSSSLTARVLDETG 86
>sp|Q5N8Z0|DRB1_ORYSJ Double-stranded RNA-binding protein 1 OS=Oryza sativa subsp.
japonica GN=DRB1 PE=2 SV=1
Length = 441
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 2 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
+K++LQ +AQ+ G LP YQ+ EG HA +F++ V+VDG + SP F K AE A
Sbjct: 87 YKSQLQIYAQKKGKLLPSYQTIREGPGHASRFKSVVTVDGKAFESPEYFHTVKEAESAAA 146
Query: 62 KIALECISKKI-KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL-LPVFVS 119
K+AL + ++ E P+ + K++L E A K LP YST ++ +P+F S
Sbjct: 147 KLALMSLPQEASSSEQVPV---QPLSYKNLLQELAQKHGFSLPVYSTTSDGSVQVPMFKS 203
Query: 120 SLVFNGVTYTGEPGRSKKEAEQLAARAVIR 149
++VF ++ GEP +KK+AE AAR +
Sbjct: 204 TVVFQDGSFQGEPANTKKQAEMNAARVAFQ 233
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 71/154 (46%), Gaps = 4/154 (2%)
Query: 1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHR-KAAEQD 59
M+K+RLQE Q+ P Y G HAP F A+VSV+GV + +P + K A
Sbjct: 1 MYKSRLQELCQQRRWAPPEYTHRCAGPAHAPLFGATVSVNGVEFRTPEDAARSAKEAHNI 60
Query: 60 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 118
AK A + +S P + + KS L +A K LP+Y T R+ F
Sbjct: 61 AAKAAFDHLSSLPLPPPPPPSENQSSY-KSQLQIYAQKKGKLLPSYQTIREGPGHASRFK 119
Query: 119 SSLVFNGVTYTG-EPGRSKKEAEQLAARAVIRTL 151
S + +G + E + KEAE AA+ + +L
Sbjct: 120 SVVTVDGKAFESPEYFHTVKEAESAAAKLALMSL 153
>sp|Q9AV50|DRB6_ORYSJ Double-stranded RNA-binding protein 6 OS=Oryza sativa subsp.
japonica GN=DRB6 PE=2 SV=1
Length = 514
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSH-RKAAEQD 59
M+KN+LQE AQRS LP Y EG HAP+F+A+V+ +G + SP F+ R+A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 60 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE-ALLPVFV 118
+ I +T K++L E A ++ LP+Y+T +S LPVF
Sbjct: 61 AEVALAALARRGPSYSLAARILDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPVFT 120
Query: 119 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151
++ G+T+TG+P ++KK+AE+ AA A +L
Sbjct: 121 CTVELAGITFTGDPAKNKKQAEKNAASAAWSSL 153
>sp|Q8H1D4|DRB4_ARATH Double-stranded RNA-binding protein 4 OS=Arabidopsis thaliana
GN=DBR4 PE=1 SV=1
Length = 355
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 60
++K +LQ +A + + LPVY + EG HAP+FR +V+ G T+ S F K+AE
Sbjct: 4 VYKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAEHAA 63
Query: 61 AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE-ALLPVFVS 119
AKIA+ ++ + EG V K++L E A K + LP Y+T S + P F S
Sbjct: 64 AKIAVASLTPQ-SPEGI------DVAYKNLLQEIAQKESSLLPFYATATSGPSHAPTFTS 116
Query: 120 SLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151
++ F G ++GE ++KK AE AA+ ++
Sbjct: 117 TVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSI 148
>sp|Q49537|VLPE_MYCHR Variant surface antigen E OS=Mycoplasma hyorhinis GN=vlpE PE=4 SV=1
Length = 243
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 41/93 (44%)
Query: 179 KESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAIT 238
KESN S + + P +S G H P+ P S G HS P+ P + G H P+
Sbjct: 148 KESNPSNPTTSDGQHSNPSNPTTSDGQHSNPSNPTTSDGQHSNPSNPTTSDGQHSNPSNP 207
Query: 239 EASTGMHPTSAAIEVSTGMHSTAADSETSTGMN 271
S G H + S G HS ++ TS G N
Sbjct: 208 TTSDGQHSNPSNPTTSDGQHSNPSNPTTSDGQN 240
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 194 PTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTSAAIEV 253
PTT+ PK S+ P+ P S G HS P+ P + G H P+ S G H +
Sbjct: 142 PTTSDPKESN-----PSNPTTSDGQHSNPSNPTTSDGQHSNPSNPTTSDGQHSNPSNPTT 196
Query: 254 STGMHSTAADSETSTGM 270
S G HS ++ TS G
Sbjct: 197 SDGQHSNPSNPTTSDGQ 213
Score = 35.8 bits (81), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 38/92 (41%)
Query: 179 KESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAIT 238
KESN S + + P +S G H P+ P S S P+ P + G H P+
Sbjct: 109 KESNPSNPTTSDPKESNPSNPTTSDGQHSNPSNPTTSDPKESNPSNPTTSDGQHSNPSNP 168
Query: 239 EASTGMHPTSAAIEVSTGMHSTAADSETSTGM 270
S G H + S G HS ++ TS G
Sbjct: 169 TTSDGQHSNPSNPTTSDGQHSNPSNPTTSDGQ 200
>sp|Q2SL32|RNC_HAHCH Ribonuclease 3 OS=Hahella chejuensis (strain KCTC 2396) GN=rnc PE=3
SV=1
Length = 226
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K RLQE+ Q + LP Y+ + +G HA F +DG++ + T S R+ AEQ A
Sbjct: 156 KTRLQEYLQARQLNLPRYEVISVQGEAHAQTFHVRCEIDGLSDATEGTGSSRRVAEQKAA 215
Query: 62 KIAL 65
K AL
Sbjct: 216 KQAL 219
>sp|B8CQJ5|RNC_SHEPW Ribonuclease 3 OS=Shewanella piezotolerans (strain WP3 / JCM 13877)
GN=rnc PE=3 SV=1
Length = 225
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 3 KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K LQEH Q+ PLP+Y+ H EG H F V+ + S R+ AEQ A
Sbjct: 157 KTLLQEHLQKFRKPLPIYKVVHTEGDAHEQTFTVECVVEDLRQAVVGVASSRRKAEQSAA 216
Query: 62 KIALECISK 70
LE I K
Sbjct: 217 AQVLELIKK 225
>sp|B0TIV7|RNC_SHEHH Ribonuclease 3 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rnc
PE=3 SV=1
Length = 225
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 3 KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K LQEH Q+ PLPVY+ H EG H F V+ ++ S R+ AEQ A
Sbjct: 157 KTLLQEHLQKFRKPLPVYKVVHTEGDAHEQTFTVECIVEDLSQAVVGVASSRRKAEQSAA 216
Query: 62 KIALECISK 70
LE + K
Sbjct: 217 AQVLELMKK 225
>sp|A8H1C7|RNC_SHEPA Ribonuclease 3 OS=Shewanella pealeana (strain ATCC 700345 /
ANG-SQ1) GN=rnc PE=3 SV=1
Length = 225
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 3 KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K LQE+ Q+ PLPVY+ +H EG H F V+ ++ S R+ AEQ A
Sbjct: 157 KTLLQEYLQKYRKPLPVYRVAHTEGDAHEQTFTVECIVEDLSQAVVGVASSRRKAEQSAA 216
Query: 62 KIALECISK 70
LE I K
Sbjct: 217 AQVLELIKK 225
>sp|A1SSM8|RNC_PSYIN Ribonuclease 3 OS=Psychromonas ingrahamii (strain 37) GN=rnc PE=3
SV=1
Length = 228
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K RLQEH Q PLP+Y+ +G H +F S S+DG+ S RK AEQ A
Sbjct: 159 KTRLQEHLQSRKQPLPIYEVLEIKGEAHNQRFTMSCSIDGLKSVQGQGTSRRK-AEQIAA 217
Query: 62 KIALECIS 69
L+ +S
Sbjct: 218 NKMLDSLS 225
>sp|Q7VRR0|RNC_BLOFL Ribonuclease 3 OS=Blochmannia floridanus GN=rnc PE=3 SV=1
Length = 232
Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K RLQE+ Q +PLP+Y + +G H F + V + Y+ S R+ AEQD A
Sbjct: 160 KTRLQEYLQHHHLPLPIYCINQVQGQAHDQIFIMNCQVSSLKYSVMGRGSSRRKAEQDAA 219
Query: 62 KIALE 66
+ AL+
Sbjct: 220 ENALK 224
>sp|B3CMS0|RNC_WOLPP Ribonuclease 3 OS=Wolbachia pipientis subsp. Culex pipiens (strain
wPip) GN=rnc PE=3 SV=1
Length = 230
Score = 40.0 bits (92), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASV---SVDGVTYTSPNTFSHRKAAEQ 58
K LQE QR+ +PLP Y+ + G H P+F SV S D V+ +P+ +K AEQ
Sbjct: 161 KTSLQEWTQRNKLPLPKYELVKQTGPAHNPEFTISVCIESYDKVSACAPS----KKIAEQ 216
Query: 59 DVAKIALECISK 70
A++ LE I K
Sbjct: 217 KAAELILEKIKK 228
>sp|Q5WVI4|RNC_LEGPL Ribonuclease 3 OS=Legionella pneumophila (strain Lens) GN=rnc PE=3
SV=1
Length = 224
Score = 39.7 bits (91), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 3 KNRLQEHAQRSGIPLPVY-QSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K +LQE Q S LP Y + EG +HA F + +++GV+ + T +R+ AEQ A
Sbjct: 156 KTQLQEFLQASKFALPEYVLTKVEGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAA 215
Query: 62 KIALE 66
K LE
Sbjct: 216 KAMLE 220
>sp|A5ID21|RNC_LEGPC Ribonuclease 3 OS=Legionella pneumophila (strain Corby) GN=rnc PE=3
SV=1
Length = 224
Score = 39.7 bits (91), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 3 KNRLQEHAQRSGIPLPVY-QSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K +LQE Q S LP Y + EG +HA F + +++GV+ + T +R+ AEQ A
Sbjct: 156 KTQLQEFLQASKFALPEYVLTKIEGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAA 215
Query: 62 KIALE 66
K LE
Sbjct: 216 KAMLE 220
>sp|Q5X446|RNC_LEGPA Ribonuclease 3 OS=Legionella pneumophila (strain Paris) GN=rnc PE=3
SV=1
Length = 224
Score = 39.7 bits (91), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 3 KNRLQEHAQRSGIPLPVY-QSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K +LQE Q S LP Y + EG +HA F + +++GV+ + T +R+ AEQ A
Sbjct: 156 KTQLQEFLQASKFALPEYVLTKIEGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAA 215
Query: 62 KIALE 66
K LE
Sbjct: 216 KAMLE 220
>sp|Q5ZUD5|RNC_LEGPH Ribonuclease 3 OS=Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 / ATCC 33152 / DSM 7513) GN=rnc PE=3 SV=1
Length = 224
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 3 KNRLQEHAQRSGIPLPVY-QSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K +LQE Q S LP Y + EG +HA F + +++GV+ + T +R+ AEQ A
Sbjct: 156 KTQLQEFLQASKFALPEYVLTKIEGDEHAQIFHVTCTIEGVSQVAYGTGPNRRKAEQLAA 215
Query: 62 KIALE 66
K LE
Sbjct: 216 KAMLE 220
>sp|Q2GIW0|RNC_ANAPZ Ribonuclease 3 OS=Anaplasma phagocytophilum (strain HZ) GN=rnc PE=3
SV=1
Length = 236
Score = 38.9 bits (89), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K LQE AQ +P Y+ N+ G +HAP F V+V+G + T +K AE A
Sbjct: 166 KTALQEWAQGHNFAIPSYRLINKSGLEHAPVFTVEVTVNGQRVHA--TGCKKKYAEIAAA 223
Query: 62 KIALECISKK 71
K+ LE ++K+
Sbjct: 224 KLMLEKVTKQ 233
>sp|C0R4Q8|RNC_WOLWR Ribonuclease 3 OS=Wolbachia sp. subsp. Drosophila simulans (strain
wRi) GN=rnc PE=3 SV=1
Length = 232
Score = 38.9 bits (89), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K LQE Q++ +PLP Y+ + G H P+F SV ++ S S +K AEQ A
Sbjct: 161 KTSLQEWTQKNKLPLPEYELVKQTGPAHNPEFTISVCIEDYGKVSA-CASSKKIAEQKAA 219
Query: 62 KIALECISK 70
++ LE I K
Sbjct: 220 ELMLEKIGK 228
>sp|Q73FT3|RNC_WOLPM Ribonuclease 3 OS=Wolbachia pipientis wMel GN=rnc PE=3 SV=1
Length = 232
Score = 38.9 bits (89), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K LQE Q++ +PLP Y+ + G H P+F SV ++ S S +K AEQ A
Sbjct: 161 KTSLQEWTQKNKLPLPEYELVKQTGPAHNPEFTISVCIEDYGKVSA-CASSKKIAEQKAA 219
Query: 62 KIALECISK 70
++ LE I K
Sbjct: 220 ELMLEKIGK 228
>sp|P51837|RNC_COXBU Ribonuclease 3 OS=Coxiella burnetii (strain RSA 493 / Nine Mile
phase I) GN=rnc PE=3 SV=2
Length = 233
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 62
K+ LQE Q +PLP Y+ G HA F + V G+ + + + R+ AEQ AK
Sbjct: 155 KSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAK 214
Query: 63 IALECIS 69
LE +
Sbjct: 215 RFLELLD 221
>sp|A9N942|RNC_COXBR Ribonuclease 3 OS=Coxiella burnetii (strain RSA 331 / Henzerling
II) GN=rnc PE=3 SV=1
Length = 233
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 62
K+ LQE Q +PLP Y+ G HA F + V G+ + + + R+ AEQ AK
Sbjct: 155 KSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAK 214
Query: 63 IALECIS 69
LE +
Sbjct: 215 RFLELLD 221
>sp|A9KFA0|RNC_COXBN Ribonuclease 3 OS=Coxiella burnetii (strain Dugway 5J108-111)
GN=rnc PE=3 SV=1
Length = 233
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 62
K+ LQE Q +PLP Y+ G HA F + V G+ + + + R+ AEQ AK
Sbjct: 155 KSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAK 214
Query: 63 IALECIS 69
LE +
Sbjct: 215 RFLELLD 221
>sp|O69161|RNC_BRAJA Ribonuclease 3 OS=Bradyrhizobium japonicum (strain USDA 110) GN=rnc
PE=3 SV=2
Length = 250
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query: 1 MHKNR---------LQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTF 50
MHK R LQE AQ G+P PVY+ G H P+FR +V + G+ +
Sbjct: 166 MHKPRRPLRDPKTVLQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLA-PAEGIG 224
Query: 51 SHRKAAEQDVAKIALE 66
++AAE+ A + +E
Sbjct: 225 GSKRAAEKVAASVMIE 240
>sp|B6IYZ9|RNC_COXB2 Ribonuclease 3 OS=Coxiella burnetii (strain CbuG_Q212) GN=rnc PE=3
SV=1
Length = 233
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 62
K+ LQE Q +PLP Y+ G HA F + V G+ + + + R+ AEQ AK
Sbjct: 155 KSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAK 214
Query: 63 IALECIS 69
LE +
Sbjct: 215 RFLELLD 221
>sp|B8F3C7|RNC_HAEPS Ribonuclease 3 OS=Haemophilus parasuis serovar 5 (strain SH0165)
GN=rnc PE=3 SV=1
Length = 223
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K RLQE+ Q +PLP Y+ + +G H F+ S V+ V + R+ AEQD A
Sbjct: 154 KTRLQEYLQGRKLPLPTYEVIDIKGEAHNQTFKVSCKVEKVDEIFIGNGTSRRKAEQDAA 213
>sp|B6J4J9|RNC_COXB1 Ribonuclease 3 OS=Coxiella burnetii (strain CbuK_Q154) GN=rnc PE=3
SV=1
Length = 233
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 62
K+ LQE Q +PLP Y+ G HA F + V G+ + + + R+ AEQ AK
Sbjct: 155 KSLLQEWLQARRLPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAK 214
Query: 63 IALECIS 69
LE +
Sbjct: 215 RFLELLD 221
>sp|Q5GTI3|RNC_WOLTR Ribonuclease 3 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS)
GN=rnc PE=3 SV=1
Length = 243
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVD--GVTYTSPNTFSHRKAAEQD 59
K LQE Q++ +PLP Y+ + G H+P+F S+ ++ G + S +K AEQ
Sbjct: 171 KTSLQEWTQKNKLPLPEYELMKQTGPAHSPEFTISICIENYGKVFACA---SSKKVAEQK 227
Query: 60 VAKIALECIS 69
A++ LE I+
Sbjct: 228 AAELMLEKIN 237
>sp|A6WKQ7|RNC_SHEB8 Ribonuclease 3 OS=Shewanella baltica (strain OS185) GN=rnc PE=3
SV=1
Length = 226
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K LQEH Q PLP YQ N EG H F ++ ++ + S R+ AEQ A
Sbjct: 158 KTLLQEHLQGFKKPLPDYQVINIEGDAHDQTFTVECRIEDLSQSVIGVASSRRKAEQIAA 217
Query: 62 KIALECISK 70
LE + K
Sbjct: 218 AQVLELLKK 226
>sp|A9L5N6|RNC_SHEB9 Ribonuclease 3 OS=Shewanella baltica (strain OS195) GN=rnc PE=3
SV=1
Length = 226
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K LQEH Q PLP YQ N EG H F ++ ++ + S R+ AEQ A
Sbjct: 158 KTLLQEHLQGFKKPLPDYQVINIEGDAHDQTFTVECRIEDLSQSVIGVASSRRKAEQIAA 217
Query: 62 KIALECISK 70
LE + K
Sbjct: 218 AQVLELLKK 226
>sp|A3D1V6|RNC_SHEB5 Ribonuclease 3 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091)
GN=rnc PE=3 SV=1
Length = 226
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K LQEH Q PLP YQ N EG H F ++ ++ + S R+ AEQ A
Sbjct: 158 KTLLQEHLQGFKKPLPDYQVINIEGDAHDQTFTVECRIEDLSQSVIGVASSRRKAEQIAA 217
Query: 62 KIALECISK 70
LE + K
Sbjct: 218 AQVLELLKK 226
>sp|B8EBQ2|RNC_SHEB2 Ribonuclease 3 OS=Shewanella baltica (strain OS223) GN=rnc PE=3
SV=1
Length = 226
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K LQEH Q PLP YQ N EG H F ++ ++ + S R+ AEQ A
Sbjct: 158 KTLLQEHLQGFKKPLPDYQVINIEGDAHDQTFTVECRIEDLSQSVIGVASSRRKAEQIAA 217
Query: 62 KIALECISK 70
LE + K
Sbjct: 218 AQVLELLKK 226
>sp|Q8EH81|RNC_SHEON Ribonuclease 3 OS=Shewanella oneidensis (strain MR-1) GN=rnc PE=3
SV=1
Length = 226
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K LQE+ Q PLP YQ N EG H F +D ++ + S R+ AEQ A
Sbjct: 158 KTLLQEYLQGLKKPLPDYQVINIEGDAHDQTFTVECRIDDLSQSVIGVASSRRKAEQIAA 217
Query: 62 KIALECISK 70
LE + K
Sbjct: 218 AQVLELLKK 226
>sp|B7VK79|RNC_VIBSL Ribonuclease 3 OS=Vibrio splendidus (strain LGP32) GN=rnc PE=3 SV=1
Length = 225
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K RLQE Q PLPVY N +G H +F V GV + R+ AEQ A
Sbjct: 156 KTRLQEFLQGRRNPLPVYTVTNIKGEAHNQEFTVECEVAGVDKPVIGKGTSRRKAEQAAA 215
Query: 62 KIALECIS 69
+ ALE +S
Sbjct: 216 ETALEQLS 223
>sp|Q52698|RNC_RHOCA Ribonuclease 3 OS=Rhodobacter capsulatus GN=rnc PE=1 SV=1
Length = 228
Score = 37.0 bits (84), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 3 KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K LQE AQ G+P P Y++ +G HAP+FR +V + S R AEQ A
Sbjct: 159 KTALQEWAQARGLPPPRYETLGRDGPDHAPQFRIAVVLASGETEEAQAGSKRN-AEQAAA 217
Query: 62 KIALECISK 70
K LE + +
Sbjct: 218 KALLERLER 226
>sp|B4RCU4|RNC_PHEZH Ribonuclease 3 OS=Phenylobacterium zucineum (strain HLK1) GN=rnc
PE=3 SV=1
Length = 238
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 3 KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K +LQE Q G+PLP Y+ EG HAP F V V G S R+AAE+ A
Sbjct: 163 KTQLQEWVQGMGLPLPTYEIVSQEGPPHAPSFTVEVQVAGFGAERGEGRS-RQAAEKAAA 221
Query: 62 KIAL 65
+ L
Sbjct: 222 QCML 225
>sp|A8I3B5|RNC_AZOC5 Ribonuclease 3 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM
5975 / ORS 571) GN=rnc PE=3 SV=1
Length = 235
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 3 KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGV 42
K LQE AQ G+P PVY+ G HAP+FR +V + G+
Sbjct: 162 KTVLQEWAQARGLPPPVYRDVERSGPDHAPRFRVAVDLPGL 202
>sp|Q608M7|RNC_METCA Ribonuclease 3 OS=Methylococcus capsulatus (strain ATCC 33009 /
NCIMB 11132 / Bath) GN=rnc PE=3 SV=1
Length = 230
Score = 36.6 bits (83), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K RLQE Q G+PLPVY ++ G H FR V S RK AEQ A
Sbjct: 156 KTRLQELMQGRGLPLPVYTLIDQSGLPHDQHFRVRCEVPLAVEPCVGEGSSRKKAEQQAA 215
Query: 62 KIALECISKK 71
+ L +S +
Sbjct: 216 ENMLSRLSDQ 225
>sp|Q3SRB3|RNC_NITWN Ribonuclease 3 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC
25391) GN=rnc PE=3 SV=1
Length = 266
Score = 36.6 bits (83), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 3 KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGV 42
K LQE AQ G+P PVY+ G H P+FR +V + G+
Sbjct: 198 KTVLQEWAQGKGLPTPVYREVERTGPHHDPRFRVAVELPGL 238
>sp|A7MZA8|RNC_VIBHB Ribonuclease 3 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120)
GN=rnc PE=3 SV=1
Length = 225
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K RLQE Q PLPVY N +G H +F V GV + R+ AEQ A
Sbjct: 156 KTRLQEFLQGRRKPLPVYTVTNIKGEAHNQEFTVECDVAGVDKPVIGKGTSRRKAEQAAA 215
Query: 62 KIALECIS 69
+ ALE ++
Sbjct: 216 ETALEQLT 223
>sp|Q9KA05|RNC_BACHD Ribonuclease 3 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=rnc PE=3 SV=1
Length = 263
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 88 KSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 145
KS L EF + NL Y Q A FVS +V N T GRSKKEAEQ AA+
Sbjct: 192 KSQLQEFIQRDNLGHIHYEIVQERGPAHNREFVSEVVLNNETLGVGTGRSKKEAEQHAAQ 251
Query: 146 AVIRTL 151
+ TL
Sbjct: 252 QALITL 257
>sp|C3LR04|RNC_VIBCM Ribonuclease 3 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rnc
PE=3 SV=1
Length = 225
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 3 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 61
K RLQE Q PLPVY N +G H +F + V G+ + R+ AEQ A
Sbjct: 156 KTRLQEFLQGRRKPLPVYTVTNIKGEAHNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAA 215
Query: 62 KIALECIS 69
+ ALE ++
Sbjct: 216 ETALEQLT 223
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.126 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,709,278
Number of Sequences: 539616
Number of extensions: 5113283
Number of successful extensions: 16305
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 372
Number of HSP's that attempted gapping in prelim test: 15300
Number of HSP's gapped (non-prelim): 1081
length of query: 348
length of database: 191,569,459
effective HSP length: 118
effective length of query: 230
effective length of database: 127,894,771
effective search space: 29415797330
effective search space used: 29415797330
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)