Query 018960
Match_columns 348
No_of_seqs 226 out of 1760
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:31:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3732 Staufen and related do 99.9 9.4E-25 2E-29 211.9 17.0 202 2-209 40-299 (339)
2 COG0571 Rnc dsRNA-specific rib 99.8 5.1E-19 1.1E-23 166.6 10.2 140 3-155 85-233 (235)
3 PRK12371 ribonuclease III; Rev 99.8 3.1E-18 6.8E-23 161.0 10.5 135 4-153 88-231 (235)
4 PRK14718 ribonuclease III; Pro 99.7 1.1E-17 2.3E-22 168.7 10.6 138 3-153 75-222 (467)
5 PRK12372 ribonuclease III; Rev 99.7 2.9E-17 6.3E-22 164.3 11.3 139 3-154 75-223 (413)
6 cd00048 DSRM Double-stranded R 99.6 2.7E-15 5.8E-20 111.6 9.3 66 86-151 1-68 (68)
7 PRK00102 rnc ribonuclease III; 99.6 2.4E-15 5.2E-20 138.9 10.7 138 3-153 82-228 (229)
8 TIGR02191 RNaseIII ribonucleas 99.6 2.7E-15 5.8E-20 137.5 9.7 136 3-151 76-220 (220)
9 PHA02701 ORF020 dsRNA-binding 99.6 4.2E-15 9.1E-20 134.7 10.4 74 82-156 105-180 (183)
10 smart00358 DSRM Double-strande 99.6 9.7E-15 2.1E-19 108.9 9.1 64 87-151 1-66 (67)
11 PF00035 dsrm: Double-stranded 99.5 3.1E-14 6.8E-19 106.7 8.7 65 87-151 1-67 (67)
12 PHA03103 double-strand RNA-bin 99.5 5E-14 1.1E-18 128.1 10.3 73 81-155 105-179 (183)
13 KOG4334 Uncharacterized conser 99.3 8.4E-12 1.8E-16 126.5 10.8 175 1-188 376-588 (650)
14 smart00358 DSRM Double-strande 99.3 2.9E-11 6.3E-16 90.0 8.2 65 2-68 1-66 (67)
15 PF14709 DND1_DSRM: double str 99.2 3.1E-11 6.8E-16 96.3 7.2 68 85-152 1-80 (80)
16 cd00048 DSRM Double-stranded R 99.2 6.6E-11 1.4E-15 87.8 8.1 67 1-68 1-68 (68)
17 PHA02701 ORF020 dsRNA-binding 99.2 3.7E-11 8.1E-16 109.2 7.9 67 2-70 110-177 (183)
18 PF00035 dsrm: Double-stranded 99.2 4.4E-11 9.6E-16 89.5 6.8 66 2-68 1-67 (67)
19 KOG3732 Staufen and related do 99.2 4E-11 8.7E-16 117.3 8.2 105 50-157 2-110 (339)
20 KOG2777 tRNA-specific adenosin 99.2 1.3E-10 2.8E-15 120.2 11.3 163 18-196 10-210 (542)
21 PHA03103 double-strand RNA-bin 99.1 1.3E-10 2.8E-15 105.9 8.4 67 2-70 111-177 (183)
22 PRK12371 ribonuclease III; Rev 99.0 9E-10 1.9E-14 103.9 8.7 68 2-70 163-231 (235)
23 KOG1817 Ribonuclease [RNA proc 99.0 2E-09 4.2E-14 108.5 10.3 136 6-154 355-504 (533)
24 PRK14718 ribonuclease III; Pro 98.9 2E-09 4.3E-14 109.4 7.8 69 2-70 153-222 (467)
25 PRK12372 ribonuclease III; Rev 98.9 4.7E-09 1E-13 105.8 8.2 69 2-70 153-222 (413)
26 COG0571 Rnc dsRNA-specific rib 98.8 1E-08 2.3E-13 97.0 8.7 68 2-70 163-231 (235)
27 PF14709 DND1_DSRM: double str 98.8 1.5E-08 3.3E-13 80.8 7.6 67 2-68 3-79 (80)
28 PRK00102 rnc ribonuclease III; 98.8 2E-08 4.4E-13 92.8 8.6 68 2-70 160-228 (229)
29 TIGR02191 RNaseIII ribonucleas 98.6 7.6E-08 1.7E-12 88.2 8.0 66 2-68 154-220 (220)
30 KOG4334 Uncharacterized conser 98.1 1.8E-06 3.8E-11 88.5 3.9 74 81-154 371-444 (650)
31 KOG3769 Ribonuclease III domai 97.8 3.7E-05 8E-10 75.0 5.7 96 84-198 231-329 (333)
32 KOG0921 Dosage compensation co 97.4 0.00026 5.7E-09 77.5 6.5 151 2-154 3-241 (1282)
33 KOG2777 tRNA-specific adenosin 96.9 0.0053 1.2E-07 64.5 9.9 64 2-72 92-156 (542)
34 PF03368 Dicer_dimer: Dicer di 96.6 0.011 2.5E-07 47.9 7.8 66 88-156 2-76 (90)
35 KOG1817 Ribonuclease [RNA proc 96.5 0.011 2.4E-07 60.6 8.4 68 2-70 429-503 (533)
36 KOG3792 Transcription factor N 96.3 0.0027 5.9E-08 68.1 3.4 125 21-153 396-571 (816)
37 KOG3769 Ribonuclease III domai 94.9 0.04 8.7E-07 54.3 5.1 69 2-71 234-304 (333)
38 PF14954 LIX1: Limb expression 94.2 0.24 5.2E-06 46.9 8.3 82 82-165 18-110 (252)
39 KOG2334 tRNA-dihydrouridine sy 91.7 0.084 1.8E-06 54.3 1.5 69 84-154 374-443 (477)
40 PF03368 Dicer_dimer: Dicer di 89.3 0.99 2.1E-05 36.6 5.6 64 3-72 2-75 (90)
41 KOG0921 Dosage compensation co 88.5 0.65 1.4E-05 52.1 5.1 67 86-153 2-70 (1282)
42 PF14954 LIX1: Limb expression 70.3 15 0.00032 35.2 6.6 65 3-67 24-94 (252)
43 PF14622 Ribonucleas_3_3: Ribo 62.8 0.34 7.3E-06 41.3 -5.3 58 3-66 62-126 (128)
44 KOG2334 tRNA-dihydrouridine sy 57.3 5 0.00011 41.7 1.1 64 2-68 377-440 (477)
45 PF02169 LPP20: LPP20 lipoprot 49.2 25 0.00054 27.5 3.7 29 126-154 13-41 (92)
46 KOG3792 Transcription factor N 47.6 8.9 0.00019 42.1 1.2 63 86-151 371-441 (816)
47 PF08121 Toxin_33: Waglerin fa 28.0 36 0.00078 20.7 1.1 13 270-282 9-21 (22)
48 KOG2422 Uncharacterized conser 26.3 31 0.00067 37.4 1.1 31 298-328 73-106 (665)
49 KOG0701 dsRNA-specific nucleas 26.1 87 0.0019 37.9 4.7 72 84-155 1513-1600(1606)
50 PF14657 Integrase_AP2: AP2-li 24.9 2.4E+02 0.0052 19.7 5.2 21 131-152 22-42 (46)
51 PHA02893 hypothetical protein; 21.2 53 0.0012 26.9 1.3 38 307-347 3-40 (88)
No 1
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.92 E-value=9.4e-25 Score=211.86 Aligned_cols=202 Identities=23% Similarity=0.213 Sum_probs=160.1
Q ss_pred hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcCCC---
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEGC--- 77 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e~~--- 77 (348)
++|.|+|||.++++ .+.|++++ +|+.|.+.|.++|.++.+. ..|.|.|||.||+.||..+|..|.......+.
T Consensus 40 ~IS~l~E~~~r~~~-~v~fevl~eeGp~H~~~fv~rvtvg~~~--a~GeG~sKK~AKh~AA~~~L~~lk~l~~l~~v~k~ 116 (339)
T KOG3732|consen 40 PISLLQEYGLRRGL-TPVYEVLREEGPPHMPNFVFRVTVGEIT--ATGEGKSKKLAKHRAAEALLKELKKLPPLANVRKD 116 (339)
T ss_pred hHHHHHHHHHHhCC-CcceeeeeccCCccCCCeEEEEEEeeeE--EecCCCchhHHHHHHHHHHHHHHhcCCCccccccC
Confidence 58999999999997 56899988 8999999999999998543 44689999999999999999999876432100
Q ss_pred ---------C---------CCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHH
Q 018960 78 ---------P---------LINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKK 137 (348)
Q Consensus 78 ---------~---------~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKK 137 (348)
+ +......||+++||||||+++|..|.|+++.+ .+|.++|+++|.+.+. ..+|.|.|||
T Consensus 117 ~~~~~~~~~~~~~~~q~~d~~~~~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~-~~~GkG~sKK 195 (339)
T KOG3732|consen 117 SLKFAKMKSSGVKKDQPGDPEYGQVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENF-TEEGKGPSKK 195 (339)
T ss_pred cccccccccCCccccCCCCcccccccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEecce-eeecCCchHH
Confidence 0 01134689999999999999999999999998 4699999999999986 4679999999
Q ss_pred HHHHHHHHHHHHHHHhhCC-----------------------C----hhHHHHHHHhhhhHHHhh-------hcccCCcc
Q 018960 138 EAEQLAARAVIRTLLVTSG-----------------------S----ATILSEIIKSKGKLYAAL-------NKVKESNY 183 (348)
Q Consensus 138 eAKq~AA~~AL~~L~~~s~-----------------------~----~~ll~e~i~sk~~l~~~~-------~k~k~~~~ 183 (348)
.||++||.+||+.|..... | .+...++-.-+..++..+ -+..+..+
T Consensus 196 iAKRnAAeamLe~l~~~~~~~~p~~~~~~~~~p~~~~~~~~~~~s~~~s~~eel~~~k~~~~~~~~~~~~~~~~~~~~~~ 275 (339)
T KOG3732|consen 196 IAKRNAAEAMLESLGFVKPNKTPENLKVSLLKPASGRALGCSDKSLDNSEGEELSRLKACLKVIFNSAGLAYIKLLSEIA 275 (339)
T ss_pred HHHHHHHHHHHHHhccCCCCcCcccccccccccccCcCCccCccccccchhhhhhhhhhhhhhccccccccccccccccc
Confidence 9999999999999983321 1 123334444455555432 11244668
Q ss_pred cceeeccCccccccccCCCCCCCCCC
Q 018960 184 STQKIATSYVPTTAIPKSSSGIHPIP 209 (348)
Q Consensus 184 s~qk~~~~~~~~~~~~~~~~~~~~~~ 209 (348)
-++.|...|..+++. +.+|+++|+
T Consensus 276 ~e~~f~~~y~d~~~~--t~sg~~~~~ 299 (339)
T KOG3732|consen 276 PENQFTVTYPDIEEL--TLSGQNQCL 299 (339)
T ss_pred cccchheecchhHHh--hhhhHHHHH
Confidence 888999999988888 889999998
No 2
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.78 E-value=5.1e-19 Score=166.55 Aligned_cols=140 Identities=28% Similarity=0.291 Sum_probs=120.8
Q ss_pred HHHHHHHHHHcCCCCCceEEeccCCCCCCce-EEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcC
Q 018960 3 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKF-RASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE 75 (348)
Q Consensus 3 KS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~F-t~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e 75 (348)
...|..+++.++ +..|+.++.|+...+.| +.+++.| |++|+|+| .+.|++++.+.+...+.....
T Consensus 85 ~~~La~ia~~l~--l~~~l~lg~ge~~~gg~~~~silaD~~EAligAiylD~g----~~~~~~~i~~l~~~~~~~~~~-- 156 (235)
T COG0571 85 EESLAEIARELG--LGDYLRLGKGEEKSGGRRRESILADAFEALIGAIYLDSG----LEAARKFILKLFLPRLEEIDA-- 156 (235)
T ss_pred HHHHHHHHHHhC--ccchhhccCChhhcCCCCchhHHHHHHHHHHHHHHHhCC----hHHHHHHHHHHHHHHHhhccc--
Confidence 467999999999 89999999999887655 4788888 89999987 799999988886666554321
Q ss_pred CCCCCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960 76 GCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV 153 (348)
Q Consensus 76 ~~~~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~ 153 (348)
.....|||+.||||||+++..+|.|+++.+ ++|++.|++.|.++|..++.|.|+|||+|||.||+.||+.|..
T Consensus 157 -----~~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~ 231 (235)
T COG0571 157 -----GDQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGV 231 (235)
T ss_pred -----cccccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhcc
Confidence 123489999999999999999999999988 4699999999999999999999999999999999999999875
Q ss_pred hC
Q 018960 154 TS 155 (348)
Q Consensus 154 ~s 155 (348)
..
T Consensus 232 ~~ 233 (235)
T COG0571 232 KE 233 (235)
T ss_pred cc
Confidence 43
No 3
>PRK12371 ribonuclease III; Reviewed
Probab=99.75 E-value=3.1e-18 Score=160.99 Aligned_cols=135 Identities=21% Similarity=0.171 Sum_probs=107.5
Q ss_pred HHHHHHHHHcCCCCCceEEeccCCCC-CCceEEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcCC
Q 018960 4 NRLQEHAQRSGIPLPVYQSHNEGFQH-APKFRASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEG 76 (348)
Q Consensus 4 S~LqE~~QK~g~~LP~Y~lv~~Gp~H-~~~Ft~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e~ 76 (348)
..|..+|.++| |+.|++.+.+... ......++..| |++|+|+| ...|++++-+.++..+...
T Consensus 88 ~~La~ia~~lg--L~~~i~~~~~~~~~~~~~~~~ilad~~EAliGAiylD~G----~~~a~~~i~~~~~~~~~~~----- 156 (235)
T PRK12371 88 ETCAAIADEIG--LHDLIRTGSDVKKLTGKRLLNVRADVVEALIAAIYLDGG----LEAARPFIQRYWQKRALET----- 156 (235)
T ss_pred HHHHHHHHHCC--cHHHhccCcchhhcCCcccchHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHhcc-----
Confidence 57899999999 8889987654433 12223456666 99999987 6888888766644333221
Q ss_pred CCCCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960 77 CPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV 153 (348)
Q Consensus 77 ~~~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~ 153 (348)
.....|||+.||||||+++...|.|+++.+ ++|.+.|+|.|.++|..++.|.|+|||+|||.||+.||+.|..
T Consensus 157 ----~~~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 157 ----DAARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred ----ccccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhh
Confidence 123569999999999999999999999866 5799999999999999999999999999999999999999864
No 4
>PRK14718 ribonuclease III; Provisional
Probab=99.73 E-value=1.1e-17 Score=168.69 Aligned_cols=138 Identities=21% Similarity=0.254 Sum_probs=109.1
Q ss_pred HHHHHHHHHHcCCCCCceEEeccCCCCCCce-EEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcC
Q 018960 3 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKF-RASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE 75 (348)
Q Consensus 3 KS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~F-t~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e 75 (348)
...|.++++++| |..|++++.|+.....+ ..+++.| |++|+|+| ...++.+.-+.+...|.. ..
T Consensus 75 netLA~IAr~LG--L~d~Lrlg~gE~~sgG~~~~sILADvFEALIGAIYLDsG----~e~a~~fI~~ll~p~i~~-~d-- 145 (467)
T PRK14718 75 QQSLYEIAQALN--ISDGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGG----FEAAQGVIKRLYVPILDH-ID-- 145 (467)
T ss_pred hHHHHHHHHHcC--chHHHhhCCcccccCCCCChhHHHHHHHHHHHHHHHccC----HHHHHHHHHHHHHHHHhh-hc--
Confidence 467999999999 78899888776554333 4567777 99999987 577777765554333322 10
Q ss_pred CCCCCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCE-EeeeeecCCHHHHHHHHHHHHHHHHH
Q 018960 76 GCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGV-TYTGEPGRSKKEAEQLAARAVIRTLL 152 (348)
Q Consensus 76 ~~~~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~-~~~~G~G~SKKeAKq~AA~~AL~~L~ 152 (348)
......|||+.||||||++++.+|.|.++.+ ++|++.|++.|+|+|. .++.|.|.|||+|||.||+.||+.|.
T Consensus 146 ----~~~~~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~ 221 (467)
T PRK14718 146 ----PRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVT 221 (467)
T ss_pred ----ccccccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 1123579999999999999999999999876 5799999999999995 45789999999999999999999997
Q ss_pred h
Q 018960 153 V 153 (348)
Q Consensus 153 ~ 153 (348)
.
T Consensus 222 ~ 222 (467)
T PRK14718 222 A 222 (467)
T ss_pred c
Confidence 3
No 5
>PRK12372 ribonuclease III; Reviewed
Probab=99.71 E-value=2.9e-17 Score=164.34 Aligned_cols=139 Identities=19% Similarity=0.218 Sum_probs=110.1
Q ss_pred HHHHHHHHHHcCCCCCceEEeccCCCCCCc-eEEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcC
Q 018960 3 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPK-FRASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE 75 (348)
Q Consensus 3 KS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~-Ft~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e 75 (348)
.+.|.++|.+++ |..|++++.|+..... ...+++.| |++|+|+| ...++.+.-+.++..|....
T Consensus 75 n~tLA~IA~~Lg--L~~~Lrlg~ge~~sgg~~~~kILADvfEALIGAIYLDsG----~e~a~~fV~~ll~p~l~~~~--- 145 (413)
T PRK12372 75 QQSLYEIAQALN--ISEGLRLGEGELRSGGFRRPSILADAFEAIIGAVFLDGG----FEAAQGVIKRLYVPILDHID--- 145 (413)
T ss_pred hHHHHHHHHHcC--chHhhhcCcchhhcCCCCCccHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHhhcc---
Confidence 468999999999 7788888877654433 34567777 99999987 67777777666444332211
Q ss_pred CCCCCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCE-EeeeeecCCHHHHHHHHHHHHHHHHH
Q 018960 76 GCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGV-TYTGEPGRSKKEAEQLAARAVIRTLL 152 (348)
Q Consensus 76 ~~~~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~-~~~~G~G~SKKeAKq~AA~~AL~~L~ 152 (348)
......|||+.||||||++++..|+|+++.+ ++|++.|+|.|+|+|. .++.|.|.|||+|||.||+.||+.|.
T Consensus 146 ----~~~~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~ 221 (413)
T PRK12372 146 ----PRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVM 221 (413)
T ss_pred ----cccccCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 0123569999999999999999999999876 5799999999999985 45789999999999999999999998
Q ss_pred hh
Q 018960 153 VT 154 (348)
Q Consensus 153 ~~ 154 (348)
..
T Consensus 222 ~~ 223 (413)
T PRK12372 222 AA 223 (413)
T ss_pred cc
Confidence 43
No 6
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.62 E-value=2.7e-15 Score=111.55 Aligned_cols=66 Identities=36% Similarity=0.412 Sum_probs=60.7
Q ss_pred ChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHH
Q 018960 86 FCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151 (348)
Q Consensus 86 npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L 151 (348)
|||+.|+||||++++..|.|+++.. ++|.+.|.|.|.|+|..++.|.|.|||+||+.||+.||..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 7999999999999999999999654 46889999999999988889999999999999999999865
No 7
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.61 E-value=2.4e-15 Score=138.92 Aligned_cols=138 Identities=27% Similarity=0.291 Sum_probs=105.8
Q ss_pred HHHHHHHHHHcCCCCCceEEeccCCCCC-CceEEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcC
Q 018960 3 KNRLQEHAQRSGIPLPVYQSHNEGFQHA-PKFRASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE 75 (348)
Q Consensus 3 KS~LqE~~QK~g~~LP~Y~lv~~Gp~H~-~~Ft~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e 75 (348)
...|..++.++| +..|...+.|.... ......+..| |++|.+.| ...|+++.-+.+...+....
T Consensus 82 n~~la~~a~~lg--l~~~i~~~~~~~~~~~~~~~k~~ad~~EA~iGAiyld~g----~~~~~~~i~~~~~~~l~~~~--- 152 (229)
T PRK00102 82 EESLAEIARELG--LGEYLLLGKGEEKSGGRRRPSILADAFEALIGAIYLDQG----LEAARKFILRLFEPRIEEID--- 152 (229)
T ss_pred HHHHHHHHHHCC--cHHHHccCcHHHHcCCCCCccHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHhhc---
Confidence 367899999999 77888766443221 1223345555 89999976 57777776666444333321
Q ss_pred CCCCCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960 76 GCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV 153 (348)
Q Consensus 76 ~~~~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~ 153 (348)
......|||+.|+||||++++..|.|+++.+ +.|.+.|+|.|.++|..+++|.|.|||+||+.||+.||+.|..
T Consensus 153 ----~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 153 ----LGDLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred ----cccccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence 1234679999999999999999999999876 3588999999999999999999999999999999999999864
No 8
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.60 E-value=2.7e-15 Score=137.45 Aligned_cols=136 Identities=29% Similarity=0.341 Sum_probs=106.7
Q ss_pred HHHHHHHHHHcCCCCCceEEeccCCCCC-CceEEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcC
Q 018960 3 KNRLQEHAQRSGIPLPVYQSHNEGFQHA-PKFRASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE 75 (348)
Q Consensus 3 KS~LqE~~QK~g~~LP~Y~lv~~Gp~H~-~~Ft~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e 75 (348)
...|..++.++| ++.|.....+.... ......+..| |++|.+.| ...|+++..+.++..+.....
T Consensus 76 n~~la~~a~~~g--l~~~i~~~~~~~~~~~~~~~k~~ad~~eAliGAiyld~g----~~~~~~~i~~~~~~~~~~~~~-- 147 (220)
T TIGR02191 76 EESLAEVARELG--LGKFLLLGKGEEKSGGRRRESILADAFEALIGAIYLDSG----LEAARKFILKLLIPRIDAIEK-- 147 (220)
T ss_pred HHHHHHHHHHCC--cHHHhccCchHhhcCCcccchHHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHHhhhc--
Confidence 357899999998 77787765432221 2223445555 89999976 788998888886665554321
Q ss_pred CCCCCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHH
Q 018960 76 GCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151 (348)
Q Consensus 76 ~~~~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L 151 (348)
.....|||+.|+||||++++..|.|+++.+ ++|.+.|.|.|.++|..++.|.|.|||+||+.||+.||+.|
T Consensus 148 -----~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 148 -----EETLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred -----ccccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHhC
Confidence 124679999999999999998899999865 45889999999999999999999999999999999999865
No 9
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.60 E-value=4.2e-15 Score=134.72 Aligned_cols=74 Identities=26% Similarity=0.374 Sum_probs=67.4
Q ss_pred CCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhCC
Q 018960 82 QDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSG 156 (348)
Q Consensus 82 ~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s~ 156 (348)
....|||+.||||||+++..+ .|+++.+ ++|.+.|+++|.|+|..++.|.|+|||+|||+||+.||..|.....
T Consensus 105 ~k~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~~~ 180 (183)
T PHA02701 105 LKTLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILINNCG 180 (183)
T ss_pred CCCCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHhhcc
Confidence 345799999999999999888 8998876 5799999999999999999999999999999999999999977653
No 10
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.58 E-value=9.7e-15 Score=108.87 Aligned_cols=64 Identities=38% Similarity=0.443 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHH
Q 018960 87 CKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151 (348)
Q Consensus 87 pKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L 151 (348)
||+.|+||||++++ .|.|+++.. ++|.+.|.|.|.|+|..++.|.|.|||+||+.||+.||..|
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence 68999999999999 789999864 56899999999999988899999999999999999999887
No 11
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.54 E-value=3.1e-14 Score=106.69 Aligned_cols=65 Identities=34% Similarity=0.492 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHcCCCCCcEEEeec-CCCC-CcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHH
Q 018960 87 CKSILNEFAVKMNLELPAYSTRQS-EALL-PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151 (348)
Q Consensus 87 pKs~LQE~cQk~~~~~P~Y~~v~e-pgH~-~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L 151 (348)
||+.|+|||+++++.+|.|..... ++|. +.|.|+|.|+|..++.|.|.|||+||+.||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 789999999999988755544444 3444 7999999999999999999999999999999999987
No 12
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.52 E-value=5e-14 Score=128.09 Aligned_cols=73 Identities=21% Similarity=0.290 Sum_probs=64.1
Q ss_pred CCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhC
Q 018960 81 NQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS 155 (348)
Q Consensus 81 ~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s 155 (348)
+....|||+.||||||+++... |..+.+ ++|.+.|++.|.|+|..+++|.|+|||+|||+||+.||..|....
T Consensus 105 d~K~kNpKS~LQE~~Qk~~~~~--y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~~ 179 (183)
T PHA03103 105 SWKDKNPCTVINEYCQITSRDW--SINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILNYV 179 (183)
T ss_pred ccccCChhHHHHHHHHHhCCCe--EEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhcc
Confidence 4456799999999999999875 555544 579999999999999999999999999999999999999997654
No 13
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=99.31 E-value=8.4e-12 Score=126.53 Aligned_cols=175 Identities=19% Similarity=0.189 Sum_probs=130.1
Q ss_pred ChHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhc------
Q 018960 1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKD------ 74 (348)
Q Consensus 1 myKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~------ 74 (348)
|..-+|+||+|+....+|.|++.. -.+....|..+|.+|+..|++| +|.|||.||..||+.+|..|......
T Consensus 376 s~vCiLhEy~q~~lk~~pvyef~e-~~n~stpysa~v~~d~~~yGsG-~g~sKK~Ak~~AAR~tLeiLIPd~~~~~~n~~ 453 (650)
T KOG4334|consen 376 SKVCILHEYAQQCLKSLPVYEFAE-NDNNSTPYSAGVLPDLFPYGSG-VGASKKTAKLVAARDTLEILIPDLRVSEDNVC 453 (650)
T ss_pred eeeehHHHHHHHHhhhcceeehhh-ccCCCCcccccccccccccccc-cccchHHHHHHHHHHHHHHhcchhhhcccccc
Confidence 345689999999888899997764 4455678999999999999985 99999999999999999998764321
Q ss_pred CC-----------------CCC---------CCCCCCChhHHHHHHHHHcCCC--C-CcEEEeecCCCCCcEEEEEEECC
Q 018960 75 EG-----------------CPL---------INQDTVFCKSILNEFAVKMNLE--L-PAYSTRQSEALLPVFVSSLVFNG 125 (348)
Q Consensus 75 e~-----------------~~~---------~~~~~~npKs~LQE~cQk~~~~--~-P~Y~~v~epgH~~~F~v~V~I~g 125 (348)
+. +.. .......|-.+|.++.+++..- + ..++++........|++.| |
T Consensus 454 d~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d~~ik~E~i~~~nqkse~im~~---G 530 (650)
T KOG4334|consen 454 DGKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWNDLVIKKEMIGNGNQKSEVIMIL---G 530 (650)
T ss_pred cccccccccchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcceeeeeeccCCCCccceeEeee---c
Confidence 00 000 0112357889999998888532 1 1333333222444788887 7
Q ss_pred EEeeeeecCCHHHHHHHHHHHHHHHHHhh-CCChhHHHHHHHhhhhHHH--hhhcccCCcccceee
Q 018960 126 VTYTGEPGRSKKEAEQLAARAVIRTLLVT-SGSATILSEIIKSKGKLYA--ALNKVKESNYSTQKI 188 (348)
Q Consensus 126 ~~~~~G~G~SKKeAKq~AA~~AL~~L~~~-s~~~~ll~e~i~sk~~l~~--~~~k~k~~~~s~qk~ 188 (348)
+....|++.+|++++|.|.+..|+.|... .+||++| ++|+ +++-+++.+.|.+.+
T Consensus 531 kht~~~~cknkr~gkQlASQ~ilq~lHPh~~twGSlL--------riYGr~sik~vkq~~~s~~~V 588 (650)
T KOG4334|consen 531 KHTEEAECKNKRQGKQLASQRILQKLHPHLLTWGSLL--------RIYGRLSIKAVKQHSKSYFQV 588 (650)
T ss_pred cceeeeeeechhHHHHHHHHHHHHHhCHHhhhHHHHH--------HHhhhhhhHHHHhhcccceee
Confidence 77778999999999999999999999876 7899999 7888 556667766665444
No 14
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=99.25 E-value=2.9e-11 Score=90.03 Aligned_cols=65 Identities=38% Similarity=0.508 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHH
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI 68 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L 68 (348)
|++.|+|||+++++ .|.|.+.. .|+.|.+.|.+.|.++|..+.. |.|.|||+||+.||+.+|..|
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~-g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGE-GEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEE-eccCCHHHHHHHHHHHHHHhc
Confidence 68999999999999 88999887 7899999999999999987765 589999999999999999875
No 15
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=99.22 E-value=3.1e-11 Score=96.29 Aligned_cols=68 Identities=28% Similarity=0.396 Sum_probs=58.6
Q ss_pred CChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEee----------eeecCCHHHHHHHHHHHHHHHHH
Q 018960 85 VFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYT----------GEPGRSKKEAEQLAARAVIRTLL 152 (348)
Q Consensus 85 ~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~----------~G~G~SKKeAKq~AA~~AL~~L~ 152 (348)
.++++.|+|+|++++|..|.|++..+ ++|.+.|.+.|.|++..+. .-...+||+|+..||+.+|+.|.
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 36899999999999999999999865 5799999999999886652 12458999999999999999873
No 16
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=99.21 E-value=6.6e-11 Score=87.80 Aligned_cols=67 Identities=40% Similarity=0.533 Sum_probs=58.8
Q ss_pred ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHH
Q 018960 1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI 68 (348)
Q Consensus 1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L 68 (348)
.|++.|+|||+++++..|.|.+.. .|+.|.+.|.+.|.++|..+.. |.|.|||+||+.||+.+|..|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~-g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGE-GEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEE-eecCCHHHHHHHHHHHHHHhC
Confidence 379999999999988899999954 7888899999999999966665 489999999999999999754
No 17
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=99.20 E-value=3.7e-11 Score=109.17 Aligned_cols=67 Identities=21% Similarity=0.328 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 70 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~ 70 (348)
||+.||||||+.+..+ .|.++. .|+.|.+.|++.|.++|..|..| .|+|||+||++||+.||..|..
T Consensus 110 pKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G-~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA02701 110 PVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATA-SGCSKKLARHAACADALTILIN 177 (183)
T ss_pred ccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEE-EeCCHHHHHHHHHHHHHHHHHh
Confidence 8999999999998877 898776 69999999999999999998864 8999999999999999988754
No 18
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=99.20 E-value=4.4e-11 Score=89.52 Aligned_cols=66 Identities=38% Similarity=0.554 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHcCCCCCceEEeccCCCCC-CceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHH
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHNEGFQHA-PKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI 68 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~-~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L 68 (348)
|++.|+|||+++++.++.|.....|+.+. +.|.++|.++|..|.. |.|+|||+||+.||..+|..|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~-g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGE-GEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEE-EEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeE-eccCCHHHHHHHHHHHHHHhC
Confidence 78999999999998887777766676665 8999999999999985 489999999999999999876
No 19
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=99.19 E-value=4e-11 Score=117.33 Aligned_cols=105 Identities=25% Similarity=0.303 Sum_probs=85.5
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCC--CChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECC
Q 018960 50 FSHRKAAEQDVAKIALECISKKIKDEGCPLINQDT--VFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNG 125 (348)
Q Consensus 50 GsSKKeAKq~AAk~aL~~L~~~~~~e~~~~~~~~~--~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g 125 (348)
|.+...|++.||-.+|..|......+... .+.+. ..+++.|||||.+++..+ .|++.++ +.|++.|++.|.|+.
T Consensus 2 g~t~~~a~~daaa~al~~l~~~~~~~~~~-~~~~~g~KS~IS~l~E~~~r~~~~v-~fevl~eeGp~H~~~fv~rvtvg~ 79 (339)
T KOG3732|consen 2 GKTMQQAKHDAAAKALQVLQNGLISEGVM-LNADPGAKSPISLLQEYGLRRGLTP-VYEVLREEGPPHMPNFVFRVTVGE 79 (339)
T ss_pred ccchhhhhccccccchhhccCCCcchhcc-cccCcccCChHHHHHHHHHHhCCCc-ceeeeeccCCccCCCeEEEEEEee
Confidence 45678999999999998877655332211 12222 899999999999999876 9999997 569999999999985
Q ss_pred EEeeeeecCCHHHHHHHHHHHHHHHHHhhCCC
Q 018960 126 VTYTGEPGRSKKEAEQLAARAVIRTLLVTSGS 157 (348)
Q Consensus 126 ~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s~~ 157 (348)
..+.|.|+|||.||+.||..+|..|+.....
T Consensus 80 -~~a~GeG~sKK~AKh~AA~~~L~~lk~l~~l 110 (339)
T KOG3732|consen 80 -ITATGEGKSKKLAKHRAAEALLKELKKLPPL 110 (339)
T ss_pred -eEEecCCCchhHHHHHHHHHHHHHHhcCCCc
Confidence 4577999999999999999999999987643
No 20
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=99.17 E-value=1.3e-10 Score=120.16 Aligned_cols=163 Identities=29% Similarity=0.334 Sum_probs=126.8
Q ss_pred CceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhc-------CC----CC-------
Q 018960 18 PVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKD-------EG----CP------- 78 (348)
Q Consensus 18 P~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~-------e~----~~------- 78 (348)
..|..+. .|+.|.+.|..+|.++|..|. +|.|+..||..++..+.+..+. +. +.
T Consensus 10 ~~~~~~~q~~p~~~p~~~~~~~v~~~~~~-------~k~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (542)
T KOG2777|consen 10 LQYNLVSQTGPVHAPLFPFSVEVNGQEFP-------KKKAKQRAAEKALRVFLQFPEAHLSMGGTEGVNEDLTSDQADAF 82 (542)
T ss_pred cccccccccCCCCCCcccceEEecccccc-------cccccchhhhHHHHHHhhcCCcccccCCCCccccccchhhhHHH
Confidence 3455444 799999999999999998765 7899999999999988775432 10 00
Q ss_pred -CCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhC
Q 018960 79 -LINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS 155 (348)
Q Consensus 79 -~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s 155 (348)
.......||++.|+||++ -+.|.++.+ +.|.+.|.|.|.|||+.|..| |+|||+||+.||+.||+.|....
T Consensus 83 ~~~~~~~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~ 156 (542)
T KOG2777|consen 83 LSLGKEGKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKID 156 (542)
T ss_pred HhhhhccCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhcc
Confidence 011236899999999998 458888877 469999999999999999878 99999999999999999998653
Q ss_pred CC----------------hhHHHHHHHhhhhHHHhhhcccCCcccceeeccCccccc
Q 018960 156 GS----------------ATILSEIIKSKGKLYAALNKVKESNYSTQKIATSYVPTT 196 (348)
Q Consensus 156 ~~----------------~~ll~e~i~sk~~l~~~~~k~k~~~~s~qk~~~~~~~~~ 196 (348)
.. ++.+.++.. .+ |+.++++..+.+.+-++.+++|.+.
T Consensus 157 ~~~~~~~~~~~~e~~~~~~~~Ia~lv~--~k-F~~L~k~~kp~~~~~tvLAgvv~~~ 210 (542)
T KOG2777|consen 157 ENPERPSEALTLENPSTLGDEIAELVL--EK-FDELTKNGKPIPREWTVLAGVVMTK 210 (542)
T ss_pred CCcccccccccccCCChHHHHHHHHHH--HH-HHHHHhcCCCccchhhhhhhhhhcc
Confidence 22 233333333 22 3778888889999999999998877
No 21
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=99.14 E-value=1.3e-10 Score=105.91 Aligned_cols=67 Identities=25% Similarity=0.356 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 70 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~ 70 (348)
||+.||||||+.+..+ .|.+...|+.|.+.|+++|.++|..|..| .|+|||+||+.||+.||..|..
T Consensus 111 pKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G-~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 111 PCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPA-IGSTKKEAKNNAAKLAMDKILN 177 (183)
T ss_pred hhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHh
Confidence 7899999999998654 44545589999999999999999999875 8999999999999999998855
No 22
>PRK12371 ribonuclease III; Reviewed
Probab=99.02 E-value=9e-10 Score=103.90 Aligned_cols=68 Identities=32% Similarity=0.367 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 70 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~ 70 (348)
||+.||||||+.+...|.|.++. .|+.|.+.|++.|.++|..+.. |.|+|||+|++.||+.+|..+..
T Consensus 163 ~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~-g~G~sKK~Ae~~AA~~al~~~~~ 231 (235)
T PRK12371 163 AKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPET-GEGRSKRAAEQVAAEKMLEREGV 231 (235)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEE-eeeCCHHHHHHHHHHHHHHHhhh
Confidence 89999999999887789999885 7999999999999999988765 48999999999999999988754
No 23
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=98.99 E-value=2e-09 Score=108.47 Aligned_cols=136 Identities=20% Similarity=0.200 Sum_probs=106.6
Q ss_pred HHHHHHHcCCCCCceEEeccCCCCCCceEEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 018960 6 LQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEGCPL 79 (348)
Q Consensus 6 LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e~~~~ 79 (348)
-..||.-+| .++|.+..........-+-.+++| |+.|.|+| ...++++....+.-.|....
T Consensus 355 qakva~~lg--f~e~li~n~~~k~~~~lk~K~~ADlfEAfiGaLyvD~~----le~~~qf~~~l~~Prl~~fi------- 421 (533)
T KOG1817|consen 355 QAKVADDLG--FHEYLITNFDLKDFQNLKLKDYADLFEAFIGALYVDKG----LEYCRQFLRVLFFPRLKEFI------- 421 (533)
T ss_pred HHHHHHHhC--CchhhhhCcchhhhhhhhHHHHHHHHHHHHHHHhhcCC----cHHHHHHHHHHhhHHHHHHH-------
Confidence 356788888 778877653222222223445555 88899876 78899998888777666654
Q ss_pred CCCCCCChhHHHHHHHHHcCCC------CCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHH
Q 018960 80 INQDTVFCKSILNEFAVKMNLE------LPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151 (348)
Q Consensus 80 ~~~~~~npKs~LQE~cQk~~~~------~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L 151 (348)
.++++.||++.||.+|...... +|.|.+... +.+++.|.+.|+++|+.+++|+|+|.|+|+..||+.||+.+
T Consensus 422 ~nq~wndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~ 501 (533)
T KOG1817|consen 422 RNQDWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENL 501 (533)
T ss_pred HhhhccCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHH
Confidence 3577899999999999988664 578887765 45999999999999999999999999999999999999999
Q ss_pred Hhh
Q 018960 152 LVT 154 (348)
Q Consensus 152 ~~~ 154 (348)
..+
T Consensus 502 ~~d 504 (533)
T KOG1817|consen 502 KMD 504 (533)
T ss_pred Hhh
Confidence 863
No 24
>PRK14718 ribonuclease III; Provisional
Probab=98.93 E-value=2e-09 Score=109.37 Aligned_cols=69 Identities=32% Similarity=0.393 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 70 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~ 70 (348)
||+.||||||+.++.+|.|.++. .|+.|.+.|.+.|+++|..+...|.|.|||+|++.||+.+|..|..
T Consensus 153 yKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~~ 222 (467)
T PRK14718 153 AKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVTA 222 (467)
T ss_pred HHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhcc
Confidence 79999999999999999999986 7999999999999999854433358999999999999999999874
No 25
>PRK12372 ribonuclease III; Reviewed
Probab=98.87 E-value=4.7e-09 Score=105.80 Aligned_cols=69 Identities=32% Similarity=0.377 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 70 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~ 70 (348)
||+.||||||+.++.+|.|.++. .|+.|++.|++.|+++|..+...|.|.|||+|++.||+.+|..|..
T Consensus 153 ~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~~ 222 (413)
T PRK12372 153 AKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVMA 222 (413)
T ss_pred HHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999886 7999999999999999854433458999999999999999999874
No 26
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=98.84 E-value=1e-08 Score=96.98 Aligned_cols=68 Identities=35% Similarity=0.443 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 70 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~ 70 (348)
||+.||||+|..+..+|.|.++. +|+.|++.|.+.|.++|..++. |.|+|||+|++.||+.+|..|..
T Consensus 163 ~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~-G~G~skk~AEq~AA~~al~~l~~ 231 (235)
T COG0571 163 PKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGT-GKGRSKKEAEQAAAEQALKKLGV 231 (235)
T ss_pred hhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEE-ecccCHHHHHHHHHHHHHHHhcc
Confidence 79999999999999999999988 5999999999999999977766 48999999999999999988754
No 27
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=98.81 E-value=1.5e-08 Score=80.84 Aligned_cols=67 Identities=27% Similarity=0.379 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEe---------CCCCCCchHHHHHHHHHHHHHHH
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYT---------SPNTFSHRKAAEQDVAKIALECI 68 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~---------dgG~GsSKKeAKq~AAk~aL~~L 68 (348)
.++.|+|+|+|++|+.|.|.+.. .|++|...|.++|.+.+..+. ..--.+++|+||..||+.+|..|
T Consensus 3 a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~L 79 (80)
T PF14709_consen 3 AVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQAL 79 (80)
T ss_pred HHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhc
Confidence 47899999999999999999975 799999999999999976552 11234689999999999999876
No 28
>PRK00102 rnc ribonuclease III; Reviewed
Probab=98.78 E-value=2e-08 Score=92.83 Aligned_cols=68 Identities=41% Similarity=0.523 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 70 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~ 70 (348)
||+.|+||||+.++..|.|.++. .|+.|.+.|++.|.++|..+..| .|.|||+||+.||+.||..|..
T Consensus 160 pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g-~g~skk~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 160 YKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEG-TGSSKKEAEQAAAKQALKKLKE 228 (229)
T ss_pred HHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHhh
Confidence 78999999999998889998866 68999999999999999888765 8999999999999999998754
No 29
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=98.65 E-value=7.6e-08 Score=88.25 Aligned_cols=66 Identities=44% Similarity=0.560 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHH
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI 68 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L 68 (348)
||+.|+||||+.++..|.|.++. .|+.|.+.|.+.|.++|..+..| .|.|||+|++.||+.||+.|
T Consensus 154 pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g-~g~skk~A~~~AA~~Al~~l 220 (220)
T TIGR02191 154 YKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEG-KGKSKKEAEQNAAKAALEKL 220 (220)
T ss_pred hHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHhC
Confidence 78999999999988789999875 58889999999999999888765 79999999999999999753
No 30
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=98.13 E-value=1.8e-06 Score=88.53 Aligned_cols=74 Identities=24% Similarity=0.310 Sum_probs=66.3
Q ss_pred CCCCCChhHHHHHHHHHcCCCCCcEEEeecCCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960 81 NQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT 154 (348)
Q Consensus 81 ~~~~~npKs~LQE~cQk~~~~~P~Y~~v~epgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~ 154 (348)
+......+..|+||+|+....+|.|++.......-.|...|.+++-.|++|.|.|||.||..||+.+|+.|..+
T Consensus 371 npngks~vCiLhEy~q~~lk~~pvyef~e~~n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd 444 (650)
T KOG4334|consen 371 NPNGKSKVCILHEYAQQCLKSLPVYEFAENDNNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPD 444 (650)
T ss_pred CCCCceeeehHHHHHHHHhhhcceeehhhccCCCCcccccccccccccccccccchHHHHHHHHHHHHHHhcch
Confidence 44567788899999999999999998877656677899999999999999999999999999999999999864
No 31
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=3.7e-05 Score=75.00 Aligned_cols=96 Identities=23% Similarity=0.271 Sum_probs=78.6
Q ss_pred CCChhHHHHHHHHHcCCCCCcEEEeecCC---CCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhCCChhH
Q 018960 84 TVFCKSILNEFAVKMNLELPAYSTRQSEA---LLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATI 160 (348)
Q Consensus 84 ~~npKs~LQE~cQk~~~~~P~Y~~v~epg---H~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s~~~~l 160 (348)
..+|...|-++|++++..-|+|+++.+.| -.+.|.|-++-|.+.++.|.|.|-+.|++.||+.||..|.....
T Consensus 231 l~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~~tp---- 306 (333)
T KOG3769|consen 231 LQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYDHTP---- 306 (333)
T ss_pred ccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHcCCh----
Confidence 45899999999999999999999998854 57899999999999999999999999999999999988865542
Q ss_pred HHHHHHhhhhHHHhhhcccCCcccceeeccCccccccc
Q 018960 161 LSEIIKSKGKLYAALNKVKESNYSTQKIATSYVPTTAI 198 (348)
Q Consensus 161 l~e~i~sk~~l~~~~~k~k~~~~s~qk~~~~~~~~~~~ 198 (348)
..-..++|+++++-...|++.++
T Consensus 307 ---------------~~~~p~~~~~g~~PK~t~~~~~~ 329 (333)
T KOG3769|consen 307 ---------------ERQRPPDYSEGKIPKATVRYTSI 329 (333)
T ss_pred ---------------hhcCCCccccccCCCcceeeccc
Confidence 12234567776666656666654
No 32
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.40 E-value=0.00026 Score=77.53 Aligned_cols=151 Identities=25% Similarity=0.274 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhc-------
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKD------- 74 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~------- 74 (348)
-|+.|..||-|+.+. |.|++..+|.....+|.|.|.+.+..|...|...+||.|+.+||+...++|....+.
T Consensus 3 ~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~d~p~ 81 (1282)
T KOG0921|consen 3 VKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQSDIPT 81 (1282)
T ss_pred HHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhccccccCCcc
Confidence 378899999999986 899999999999999999999999888877777889999999999999998654210
Q ss_pred -------------------------------C---CCC-----C------------------------------------
Q 018960 75 -------------------------------E---GCP-----L------------------------------------ 79 (348)
Q Consensus 75 -------------------------------e---~~~-----~------------------------------------ 79 (348)
+ +.+ .
T Consensus 82 ~~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~~qd~p~~~~p~~~d~~~~~~g~~~~~~~qkae~~~e~ea~d~~~~ih 161 (1282)
T KOG0921|consen 82 LTSSSLEASSTWQDSETATMFCGGEDGNSFQESQQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAESETVDLNAEIH 161 (1282)
T ss_pred cccccccCcccccccccccccccccccccCCCCCCCcccccccccccccccCCCCCchhHHHHhhhhhhhhhhccCcccc
Confidence 0 000 0
Q ss_pred CCCCCCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCcEEEEEEE-----CCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960 80 INQDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVF-----NGVTYTGEPGRSKKEAEQLAARAVIRTLLV 153 (348)
Q Consensus 80 ~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~~F~v~V~I-----~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~ 153 (348)
.+....|.|..|++|-|+..... .|+.+.. ++|.+.|+.+..+ +-.....+.|.+||.|+...|...+..|..
T Consensus 162 g~wt~eN~K~~ln~~~q~~~~~~-~y~~~~~g~~~~~s~~~e~si~v~~~~~~~~~~~~gsnkk~~~~~ca~s~vrqm~h 240 (1282)
T KOG0921|consen 162 GNWTMENAKKALNEYLQKMRIQD-NYKYTIVGPEHVRSFEAEASIYVPQLNRNLVAKETGSNKKVAEASCALSLVRQLFH 240 (1282)
T ss_pred CCCCcchhHHHHhHHHhhhhhcc-ccceeecCCccccchhhhHHHhhhhhchhhhhhhccccceecCcchHHHHHHHHHH
Confidence 01123689999999999999966 8888766 6799999987764 223344688999999999999999887754
Q ss_pred h
Q 018960 154 T 154 (348)
Q Consensus 154 ~ 154 (348)
-
T Consensus 241 l 241 (1282)
T KOG0921|consen 241 L 241 (1282)
T ss_pred H
Confidence 3
No 33
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=96.89 E-value=0.0053 Score=64.49 Aligned_cols=64 Identities=38% Similarity=0.413 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhh
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI 72 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~ 72 (348)
+.+.|+|+++ + +.|+++. .|+.|.+.|.+++.+||..|.. | |.|||+||+.||..+|+.|....
T Consensus 92 pv~ll~e~~~--~---~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~-~-~~sKk~ak~~aa~~al~~l~~~~ 156 (542)
T KOG2777|consen 92 PVSLLHELAN--G---LFFDFVNESGPQHAPKFVMSVVVDGRWFEG-G-GRSKKEAKQEAAMAALQVLFKID 156 (542)
T ss_pred chHHHHHHhc--c---cceeeeccCCCCCCceEEEEEEECCEEccC-C-CcchHHHHHHHHHHHHHHHHhcc
Confidence 5788999999 3 3566665 7999999999999999988865 4 89999999999999999987754
No 34
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=96.60 E-value=0.011 Score=47.94 Aligned_cols=66 Identities=23% Similarity=0.330 Sum_probs=43.8
Q ss_pred hHHHHHHHHHcCCC-----CCcEEEeecCCCCCcEEEEEEECC----EEeeeeecCCHHHHHHHHHHHHHHHHHhhCC
Q 018960 88 KSILNEFAVKMNLE-----LPAYSTRQSEALLPVFVSSLVFNG----VTYTGEPGRSKKEAEQLAARAVIRTLLVTSG 156 (348)
Q Consensus 88 Ks~LQE~cQk~~~~-----~P~Y~~v~epgH~~~F~v~V~I~g----~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s~ 156 (348)
++.|+.||++..-. .|.|.+....+ .|.|+|.+-. +.+......||+.||+.||-.|...|.....
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~---~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~ 76 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS---GFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGE 76 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G----EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC---cEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCC
Confidence 57899999987532 48888877632 8999998743 2233346799999999999999999987654
No 35
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=96.46 E-value=0.011 Score=60.63 Aligned_cols=68 Identities=24% Similarity=0.302 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHcCC------CCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960 2 HKNRLQEHAQRSGI------PLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 70 (348)
Q Consensus 2 yKS~LqE~~QK~g~------~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~ 70 (348)
+++.|+.+|..+.. .+|.|.+.+ .|+.+++.|.+.|+++|..... |.|++.|.|+-.||..||+.+..
T Consensus 429 pkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat-~~G~nik~Ae~rAA~~ALe~~~~ 503 (533)
T KOG1817|consen 429 PKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLAT-GVGSNIKQAEMRAAMQALENLKM 503 (533)
T ss_pred cHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEee-ccCchHhHHHHHHHHHHHHHHHh
Confidence 68899999988764 377888877 7999999999999999977666 58999999999999999998765
No 36
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=96.33 E-value=0.0027 Score=68.07 Aligned_cols=125 Identities=15% Similarity=0.085 Sum_probs=89.8
Q ss_pred EEeccCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh------h----hc---CCC----CC----
Q 018960 21 QSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK------I----KD---EGC----PL---- 79 (348)
Q Consensus 21 ~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~------~----~~---e~~----~~---- 79 (348)
+++..||.|.++|+.++++||..|.. .|.|++.|+=+||++.|+..... . .+ ++. .+
T Consensus 396 Lvv~t~P~~~~~~t~e~r~~~~~~~a--~gps~~~~~wh~~~k~lq~~~~p~ga~~r~~~~ge~~a~~p~~~~r~~as~d 473 (816)
T KOG3792|consen 396 LVVDTKPSHRPRRTMEVRVNGLPAEA--EGPSKKTAKWHAARKRLQNEGRPTGAAQRFGRMGEDPASMPEPKGRRPASVD 473 (816)
T ss_pred ceeccCCcccchhhhhhhhcCCcccc--CCcccccchHHHHHHHhhccCCCccccccccccCCCcccCCCCCCcccCCCc
Confidence 35568999999999999999998886 57999999999999988765210 0 00 000 00
Q ss_pred ---------------------------CCCCCCChhHHHHHHHHHcCCCCCcEEEeecC---CCCCcEEEEEEECCEEee
Q 018960 80 ---------------------------INQDTVFCKSILNEFAVKMNLELPAYSTRQSE---ALLPVFVSSLVFNGVTYT 129 (348)
Q Consensus 80 ---------------------------~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~ep---gH~~~F~v~V~I~g~~~~ 129 (348)
.+....++...|+|- .... .|++..+. +|.++|.+.|.+.|+. .
T Consensus 474 dr~a~~~~a~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~Ek----~rg~-k~El~set~~gs~~~R~v~gV~rvG~~-a 547 (816)
T KOG3792|consen 474 DRHANEKHAGIYPTEEELENVQRQVSHLERALKLVSDELAEK----RRGD-KYELPSETGTGSHDKRFVKGVMRVGIL-A 547 (816)
T ss_pred chhhhccccccCccHHHHHHHHHhhhHHHHhhcchhHHHhhh----cccc-ceecccccCCCCCCceeeeeeeeeehh-h
Confidence 001124555556553 2233 78888772 5999999999999985 4
Q ss_pred eeecCCHHHHHHHHHHHHHHHHHh
Q 018960 130 GEPGRSKKEAEQLAARAVIRTLLV 153 (348)
Q Consensus 130 ~G~G~SKKeAKq~AA~~AL~~L~~ 153 (348)
.|.+.+++-|+..|+..|++.+..
T Consensus 548 kG~~~~gd~a~~~a~Lca~~pt~~ 571 (816)
T KOG3792|consen 548 KGLLLNGDRAVELALLCAEKPTSG 571 (816)
T ss_pred ccccccchHHHHHHHHhccCcccc
Confidence 699999999999998888766543
No 37
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=94.92 E-value=0.04 Score=54.28 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHcCCCCCceEEec-cCCCC-CCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQH-APKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK 71 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H-~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~ 71 (348)
|...|.++|+++|+.-|++.+++ .|..- .+.|.+-++.|-...+. |.|.|.+.|++.||+.+|..+-..
T Consensus 234 P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGq-G~Gesl~~A~e~AA~dAL~k~y~~ 304 (333)
T KOG3769|consen 234 PRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQ-GQGESLKLAEEQAARDALIKLYDH 304 (333)
T ss_pred hHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhcc-CcchHHHHHHHHHHHHHHHHHHcC
Confidence 56789999999999999999887 45433 68999999998755444 689999999999999999887664
No 38
>PF14954 LIX1: Limb expression 1
Probab=94.19 E-value=0.24 Score=46.93 Aligned_cols=82 Identities=22% Similarity=0.263 Sum_probs=54.8
Q ss_pred CCCCChhHHHHHHHHHc---CC-----CCCcEEEeecCCCCCcEEEEEEECC-EEeee-eecCCHHHHHHHHHHHHHH-H
Q 018960 82 QDTVFCKSILNEFAVKM---NL-----ELPAYSTRQSEALLPVFVSSLVFNG-VTYTG-EPGRSKKEAEQLAARAVIR-T 150 (348)
Q Consensus 82 ~~~~npKs~LQE~cQk~---~~-----~~P~Y~~v~epgH~~~F~v~V~I~g-~~~~~-G~G~SKKeAKq~AA~~AL~-~ 150 (348)
....|-+..||||=|.. +. .+..|+.+ |+..+-|.|.|++-| -.|+. -.+.||-+|+++||+.||. .
T Consensus 18 ~~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~--ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmNS 95 (252)
T PF14954_consen 18 YGDVNVVEALQEFWQMKQSRGADLKSEALVVYESV--PSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMNS 95 (252)
T ss_pred cccchHHHHHHHHHHHHHhccccCCCCCeeeeecc--CCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHHH
Confidence 34568899999987544 22 23345433 456888999999854 55654 5789999999999999985 3
Q ss_pred HHhhCCChhHHHHHH
Q 018960 151 LLVTSGSATILSEII 165 (348)
Q Consensus 151 L~~~s~~~~ll~e~i 165 (348)
+.++-.+..+..|.|
T Consensus 96 vfNEhPsRrIt~eFi 110 (252)
T PF14954_consen 96 VFNEHPSRRITDEFI 110 (252)
T ss_pred HHhcCCcccccHHHH
Confidence 445444443443333
No 39
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=91.70 E-value=0.084 Score=54.28 Aligned_cols=69 Identities=29% Similarity=0.237 Sum_probs=60.7
Q ss_pred CCChhHHHHHHHHHcCCCCCcEEEeecCCCCCcEEEEEEECCEEeeeee-cCCHHHHHHHHHHHHHHHHHhh
Q 018960 84 TVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEP-GRSKKEAEQLAARAVIRTLLVT 154 (348)
Q Consensus 84 ~~npKs~LQE~cQk~~~~~P~Y~~v~epgH~~~F~v~V~I~g~~~~~G~-G~SKKeAKq~AA~~AL~~L~~~ 154 (348)
+..+|..|-.||.+....-|.|++++. -++.|...+.++|..|..+. -.++|.|+|.||..+|......
T Consensus 374 ~~~~k~~l~~~~~~~~~~~~~ye~~~~--~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l~ 443 (477)
T KOG2334|consen 374 WDTPKMVLADLCVKTKANGPVYETVQR--TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNLW 443 (477)
T ss_pred CCCHHHHHHHhhhhhcCCCcchhhhhh--hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCcc
Confidence 468999999999999999999999985 46889999999998888764 5999999999999999877654
No 40
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=89.32 E-value=0.99 Score=36.60 Aligned_cols=64 Identities=14% Similarity=0.053 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCC-----CCceEEeccCCCCCCceEEEEEECc-----eEEeCCCCCCchHHHHHHHHHHHHHHHHhhh
Q 018960 3 KNRLQEHAQRSGIP-----LPVYQSHNEGFQHAPKFRASVSVDG-----VTYTSPNTFSHRKAAEQDVAKIALECISKKI 72 (348)
Q Consensus 3 KS~LqE~~QK~g~~-----LP~Y~lv~~Gp~H~~~Ft~SV~vDG-----aiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~ 72 (348)
++.|+.||+++..+ .|.|.+...+. .|.++|.+-. .+.+. ...||+.||+.||-.|...|.+..
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~----~~~c~v~LP~~~pi~~i~g~--~~~sk~~AK~sAAf~Ac~~L~~~g 75 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS----GFICTVILPINSPIRSIEGP--PMRSKKLAKRSAAFEACKKLHEAG 75 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G-----EEEEEE--TT-SS--EEEE----SSHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC----cEEEEEECCCCCCCCeEEcc--ccccHHHHHHHHHHHHHHHHHHcC
Confidence 57899999997642 47777766443 7888888751 12222 456899999999999999998865
No 41
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=88.49 E-value=0.65 Score=52.06 Aligned_cols=67 Identities=24% Similarity=0.261 Sum_probs=56.5
Q ss_pred ChhHHHHHHHHHcCCCCCcEEEeecCC-CCCcEEEEEEECCEEee-eeecCCHHHHHHHHHHHHHHHHHh
Q 018960 86 FCKSILNEFAVKMNLELPAYSTRQSEA-LLPVFVSSLVFNGVTYT-GEPGRSKKEAEQLAARAVIRTLLV 153 (348)
Q Consensus 86 npKs~LQE~cQk~~~~~P~Y~~v~epg-H~~~F~v~V~I~g~~~~-~G~G~SKKeAKq~AA~~AL~~L~~ 153 (348)
|-|..|-.||.++.+. |.|.+-.+.+ ....|.|.|.+.+..+. .|...+||+|+.+||+.-.+.|-.
T Consensus 2 d~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr 70 (1282)
T KOG0921|consen 2 DVKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVR 70 (1282)
T ss_pred cHHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhh
Confidence 5578899999999998 7999888744 55579999999886655 477888999999999999999864
No 42
>PF14954 LIX1: Limb expression 1
Probab=70.32 E-value=15 Score=35.25 Aligned_cols=65 Identities=23% Similarity=0.226 Sum_probs=44.3
Q ss_pred HHHHHHHHHH---cCCCCCc--eEEeccCCCCCCceEEEEEEC-ceEEeCCCCCCchHHHHHHHHHHHHHH
Q 018960 3 KNRLQEHAQR---SGIPLPV--YQSHNEGFQHAPKFRASVSVD-GVTYTSPNTFSHRKAAEQDVAKIALEC 67 (348)
Q Consensus 3 KS~LqE~~QK---~g~~LP~--Y~lv~~Gp~H~~~Ft~SV~vD-GaiY~dgG~GsSKKeAKq~AAk~aL~~ 67 (348)
...||||=|. .|..++. ..+....|..++.|.|-|++- |..|+.-....||.+|++.||+.||..
T Consensus 24 V~~LqeFWq~Kq~r~a~~~~~~lv~YEs~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmN 94 (252)
T PF14954_consen 24 VEALQEFWQMKQSRGADLKSEALVVYESVPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMN 94 (252)
T ss_pred HHHHHHHHHHHHhccccCCCCCeeeeeccCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHH
Confidence 4577776543 2322322 111224566778899989875 678877667889999999999999854
No 43
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=62.77 E-value=0.34 Score=41.35 Aligned_cols=58 Identities=24% Similarity=0.263 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCCCCceEEeccCCCC-CCceEEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHH
Q 018960 3 KNRLQEHAQRSGIPLPVYQSHNEGFQH-APKFRASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALE 66 (348)
Q Consensus 3 KS~LqE~~QK~g~~LP~Y~lv~~Gp~H-~~~Ft~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~ 66 (348)
...|.++++++| +..|...+.|... ......++..| |++|.+.| .+.|++++-+.++.
T Consensus 62 ~~~La~~a~~lg--L~~~i~~~~~~~~~~~~~~~~vlad~feAliGAiyld~G----~~~a~~~i~~~i~~ 126 (128)
T PF14622_consen 62 NETLAEIAKQLG--LDKLIRWGPGEEKSGGSGSDKVLADVFEALIGAIYLDSG----FEAARKFIQKLILP 126 (128)
T ss_dssp HHHHHHHHHHTT--CGGC-B--HHHHHTTGGG-HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH--
T ss_pred hHHHHHHHHHCC--HHHHHHhCccHhhcCCCCCccHHHhHHHHHHHHHHHHcC----HHHHHHHHHHHhcc
Confidence 467999999999 7888877543322 22334445555 89999987 68888887776554
No 44
>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=57.31 E-value=5 Score=41.70 Aligned_cols=64 Identities=27% Similarity=0.306 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHH
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI 68 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L 68 (348)
++..|..||.+.+..-|.|++... .+..|...+.++|+.|..+-...++|.|+|.||..+|...
T Consensus 377 ~k~~l~~~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s 440 (477)
T KOG2334|consen 377 PKMVLADLCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKS 440 (477)
T ss_pred HHHHHHHhhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhc
Confidence 577899999999888888998874 5678999999999998877566789999999999887654
No 45
>PF02169 LPP20: LPP20 lipoprotein; InterPro: IPR002217 A major antigen has been recognised in Helicobacter pylori, a protein with an apparent molecular weight of 20,000 and mass 18,283 kDa []. DNA sequence analysis revealed a 525 bp gene, encoding a 175-amino acid residue product with a typical 21-residue lipoprotein signal peptide and consensus prolipoprotein processing site []. Results of experimental work with Lpp20 are consistent with it being a nonessential lipoprotein []. Prokaryotic membrane lipoproteins are synthesised with precursor signal peptides that are cleaved by specific peptidases (signal peptidase II). The enzyme recognises a conserved sequence, cutting upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [].; GO: 0009279 cell outer membrane
Probab=49.18 E-value=25 Score=27.51 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=23.7
Q ss_pred EEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960 126 VTYTGEPGRSKKEAEQLAARAVIRTLLVT 154 (348)
Q Consensus 126 ~~~~~G~G~SKKeAKq~AA~~AL~~L~~~ 154 (348)
..++.|.|.+.+.|+++|-..+.+.|...
T Consensus 13 ~l~a~G~~~~~~~A~~~A~~~la~~i~~~ 41 (92)
T PF02169_consen 13 YLYAVGSGSSREQAKQDALANLAEQISVV 41 (92)
T ss_pred EEEEEEcccChHHHHHHHHHHHHHheeEE
Confidence 35677999999999999988888877644
No 46
>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]
Probab=47.62 E-value=8.9 Score=42.15 Aligned_cols=63 Identities=21% Similarity=0.136 Sum_probs=47.3
Q ss_pred ChhHHHHHHHHHcCCCCCcEE------Eeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHH
Q 018960 86 FCKSILNEFAVKMNLELPAYS------TRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151 (348)
Q Consensus 86 npKs~LQE~cQk~~~~~P~Y~------~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L 151 (348)
|+...|..+-+++. .+ .|+ ++.+ |.|.++|+++|.+||..+. ..|.+||.|+-.||++-|+..
T Consensus 371 d~nak~mhl~grRh-rL-QYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~~-a~gps~~~~~wh~~~k~lq~~ 441 (816)
T KOG3792|consen 371 DPNAKEMHLKGRRH-RL-QYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPAE-AEGPSKKTAKWHAARKRLQNE 441 (816)
T ss_pred CcchHHhhhhcccc-cc-eeccccCCCceeccCCcccchhhhhhhhcCCccc-cCCcccccchHHHHHHHhhcc
Confidence 44444444433332 23 788 5554 6799999999999998765 779999999999999999887
No 47
>PF08121 Toxin_33: Waglerin family; InterPro: IPR012637 This family consists of the lethal peptides (waglerins) that are found in the venom of Trimeresurus wagleri (Wagler's pit viper) (Tropidolaemus wagleri). Waglerins are 22-24 residue lethal peptides and are competitive antagonist of the muscle nicotinic receptor (nAChR). Waglerin-1 possesses a distinctive selectivity for the alpha-epsilon interface binding site of the mouse nAChR [].; GO: 0030550 acetylcholine receptor inhibitor activity, 0005576 extracellular region
Probab=27.96 E-value=36 Score=20.74 Aligned_cols=13 Identities=38% Similarity=0.743 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCC
Q 018960 270 MNLPCHPFKKPKL 282 (348)
Q Consensus 270 ~~~~~~~~~~~~~ 282 (348)
.-||||-..+|||
T Consensus 9 cyppchyiprpkp 21 (22)
T PF08121_consen 9 CYPPCHYIPRPKP 21 (22)
T ss_pred CCCCccccCCCCC
Confidence 4689999999987
No 48
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.34 E-value=31 Score=37.41 Aligned_cols=31 Identities=39% Similarity=0.581 Sum_probs=15.3
Q ss_pred CCCCCcccc---cccchhhhhhhhhhhccccccc
Q 018960 298 PVLGQHSEG---GSSSTNKRRKNKRKANKKLRTD 328 (348)
Q Consensus 298 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 328 (348)
|+-+|+... ..++.+|.+|+|||.|||-.++
T Consensus 73 ~~~~~es~~~~~~~~sk~k~KKK~krkkKk~~~~ 106 (665)
T KOG2422|consen 73 PSVGQESRITLASKSSKNKKKKKKKRKKKKSTAE 106 (665)
T ss_pred cccCCcccccccchhhccccchhhhhccccccCc
Confidence 445666653 3334444455555555555443
No 49
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=26.12 E-value=87 Score=37.86 Aligned_cols=72 Identities=17% Similarity=0.063 Sum_probs=53.4
Q ss_pred CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcE--------------EEEEEECCEEeeeeecCCHHHHHHHHHHHH
Q 018960 84 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVF--------------VSSLVFNGVTYTGEPGRSKKEAEQLAARAV 147 (348)
Q Consensus 84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F--------------~v~V~I~g~~~~~G~G~SKKeAKq~AA~~A 147 (348)
....++.+.+-|-...|++|.+..+++ +.|..+| ..+|.+.++....|.|...+.||..||+.|
T Consensus 1513 i~~dsg~~~~~~~~~~~a~p~~s~~~E~~~~h~~~~~~~~~~k~~d~~~~~~tv~~~~~~~~~~~g~~~~~aK~s~~k~A 1592 (1606)
T KOG0701|consen 1513 IKLDSGNMMEPCIEKFWALPPRSPIRELLELHPERALFGKCEKVADAGKVRVTVDVFNKEVFAGEGRNYRIAKASAAKAA 1592 (1606)
T ss_pred eecCcccccchHhhcCcCCCCccchhhhccccceeeccchhhhhhhccceEEEEEecccchhhhcchhhhhhhhhHHHHH
Confidence 345667899999999999999999887 2343322 234444555555688999999999999999
Q ss_pred HHHHHhhC
Q 018960 148 IRTLLVTS 155 (348)
Q Consensus 148 L~~L~~~s 155 (348)
++.|....
T Consensus 1593 ~~ll~~~~ 1600 (1606)
T KOG0701|consen 1593 LKLLKKLG 1600 (1606)
T ss_pred HHHHHHhh
Confidence 98886553
No 50
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=24.87 E-value=2.4e+02 Score=19.67 Aligned_cols=21 Identities=33% Similarity=0.302 Sum_probs=14.1
Q ss_pred eecCCHHHHHHHHHHHHHHHHH
Q 018960 131 EPGRSKKEAEQLAARAVIRTLL 152 (348)
Q Consensus 131 G~G~SKKeAKq~AA~~AL~~L~ 152 (348)
.-..+|++|+..+++ ++..|.
T Consensus 22 ~GF~TkkeA~~~~~~-~~~~~~ 42 (46)
T PF14657_consen 22 RGFKTKKEAEKALAK-IEAELE 42 (46)
T ss_pred CCCCcHHHHHHHHHH-HHHHHH
Confidence 336899999997666 444443
No 51
>PHA02893 hypothetical protein; Provisional
Probab=21.16 E-value=53 Score=26.95 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=21.1
Q ss_pred cccchhhhhhhhhhhccccccccCCccccccCCCCCCCCcC
Q 018960 307 GSSSTNKRRKNKRKANKKLRTDAQPCVSAQPLTQVPPCSVA 347 (348)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (348)
.++.|.|+||+|+|..--.|.+ +..++|=.--.-||+-
T Consensus 3 ~~taGaKkrkRK~~~~t~~~~e---~~T~~~~d~C~TCSsC 40 (88)
T PHA02893 3 ASTAGAKKRKKKSRSATSTRKE---EETAIPEDACTTCQIC 40 (88)
T ss_pred ccccchhhhccCCccccccccc---cceecCCCCCcchhhh
Confidence 4567888877776663333322 2234555555566653
Done!