Query 018960
Match_columns 348
No_of_seqs 226 out of 1760
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 08:43:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qu6_A Protein kinase PKR; dsR 100.0 4.1E-29 1.4E-33 223.3 14.5 152 1-155 14-174 (179)
2 2yt4_A Protein DGCR8; DSRBD, R 99.9 3.4E-27 1.2E-31 219.6 14.0 173 1-188 23-228 (232)
3 2l3j_A Double-stranded RNA-spe 99.9 6E-23 2.1E-27 191.2 17.4 144 1-154 5-226 (236)
4 3adj_A F21M12.9 protein; HYL1, 99.8 4.9E-19 1.7E-23 137.9 8.7 70 84-153 3-74 (76)
5 3adg_A F21M12.9 protein; HYL1, 99.8 9.9E-19 3.4E-23 135.0 10.3 69 84-152 2-72 (73)
6 2cpn_A TAR RNA-binding protein 99.8 2.1E-18 7.1E-23 138.7 10.8 73 82-155 13-87 (89)
7 1di2_A XLRBPA, double stranded 99.8 1.7E-18 5.8E-23 132.2 8.9 65 87-152 2-68 (69)
8 3adl_A RISC-loading complex su 99.8 3.4E-18 1.2E-22 137.3 10.9 71 82-153 12-84 (88)
9 1uhz_A Staufen (RNA binding pr 99.7 5.8E-18 2E-22 136.1 10.5 69 84-153 5-75 (89)
10 2khx_A Ribonuclease 3; drosha, 99.7 2.9E-18 1E-22 136.7 7.5 70 85-154 1-77 (85)
11 2l2n_A Hyponastic leave 1; DSR 99.7 7.1E-18 2.4E-22 139.0 9.7 77 82-158 14-92 (103)
12 2dix_A Interferon-inducible do 99.7 1.3E-17 4.5E-22 132.4 10.1 70 83-154 6-77 (84)
13 1ekz_A DSRBDIII, maternal effe 99.7 2.3E-18 7.8E-23 133.9 5.3 69 82-152 4-74 (76)
14 3llh_A RISC-loading complex su 99.7 1.1E-17 3.8E-22 134.5 9.5 72 82-155 11-84 (90)
15 1x49_A Interferon-induced, dou 99.7 1.2E-17 4E-22 136.4 8.5 74 82-156 11-86 (97)
16 2nug_A Ribonuclease III, RNAse 99.7 6E-18 2E-22 155.0 6.0 133 3-152 77-218 (221)
17 1x47_A DGCR8 protein; structur 99.7 5.7E-17 1.9E-21 132.5 10.9 74 81-154 12-85 (98)
18 2b7t_A Double-stranded RNA-spe 99.7 4.7E-17 1.6E-21 125.7 9.1 67 84-153 3-71 (73)
19 1whq_A RNA helicase A; double- 99.7 4E-17 1.4E-21 133.8 8.4 70 84-154 5-76 (99)
20 1o0w_A Ribonuclease III, RNAse 99.7 5.7E-18 1.9E-22 158.4 3.5 139 3-154 103-250 (252)
21 1whn_A Hypothetical protein ri 99.7 8.2E-17 2.8E-21 137.7 9.6 71 83-154 24-95 (128)
22 1t4n_A Ribonuclease III; DSRBD 99.7 2.8E-17 9.5E-22 133.8 5.7 71 84-155 5-77 (94)
23 2dmy_A Spermatid perinuclear R 99.7 1.6E-16 5.5E-21 129.5 10.2 71 81-154 12-84 (97)
24 1x48_A Interferon-induced, dou 99.7 1.5E-16 5.1E-21 127.6 9.6 70 84-155 5-76 (88)
25 1t4o_A Ribonuclease III; RNT1P 99.7 5.4E-17 1.8E-21 136.8 5.8 88 83-171 6-95 (117)
26 1uil_A Double-stranded RNA-bin 99.6 3.1E-16 1E-20 131.3 9.0 69 85-154 26-100 (113)
27 2l33_A Interleukin enhancer-bi 99.6 4.3E-16 1.5E-20 126.0 8.5 69 84-155 13-83 (91)
28 3n3w_A Ribonuclease III; nucle 99.6 1.7E-18 5.9E-23 162.1 -6.6 137 3-152 101-246 (248)
29 2a11_A Ribonuclease III, RNAse 99.6 1.2E-17 4E-22 155.0 -4.6 140 3-155 83-233 (242)
30 1di2_A XLRBPA, double stranded 99.6 1.6E-15 5.3E-20 115.7 7.3 67 1-69 1-68 (69)
31 2ljh_A Double-stranded RNA-spe 99.6 1.7E-15 6E-20 127.2 8.2 66 83-154 35-102 (114)
32 3adg_A F21M12.9 protein; HYL1, 99.6 5.1E-15 1.7E-19 114.1 9.7 68 1-69 4-72 (73)
33 2b7v_A Double-stranded RNA-spe 99.6 4.8E-15 1.6E-19 113.7 9.4 65 84-154 3-69 (71)
34 3adj_A F21M12.9 protein; HYL1, 99.6 1.3E-14 4.5E-19 112.8 9.2 69 1-70 5-74 (76)
35 1qu6_A Protein kinase PKR; dsR 99.5 4.4E-15 1.5E-19 132.4 7.0 70 84-154 12-83 (179)
36 2yt4_A Protein DGCR8; DSRBD, R 99.5 6.9E-14 2.4E-18 129.9 11.2 73 82-154 19-91 (232)
37 3p1x_A Interleukin enhancer-bi 99.5 7.4E-14 2.5E-18 108.6 9.0 66 84-155 6-73 (75)
38 2l2n_A Hyponastic leave 1; DSR 99.5 7.7E-14 2.6E-18 114.9 9.0 71 1-72 18-89 (103)
39 3adl_A RISC-loading complex su 99.5 6E-14 2.1E-18 112.5 8.1 69 1-71 16-85 (88)
40 2cpn_A TAR RNA-binding protein 99.5 9E-14 3.1E-18 111.6 7.9 68 1-70 17-85 (89)
41 1uhz_A Staufen (RNA binding pr 99.5 1.3E-13 4.5E-18 110.7 8.0 68 1-70 7-75 (89)
42 2khx_A Ribonuclease 3; drosha, 99.4 8.7E-14 3E-18 110.8 5.8 67 2-69 3-75 (85)
43 1ekz_A DSRBDIII, maternal effe 99.4 7.3E-14 2.5E-18 108.4 5.1 66 2-70 9-75 (76)
44 2dix_A Interferon-inducible do 99.4 2.8E-13 9.7E-18 107.4 8.2 68 1-71 9-77 (84)
45 2b7t_A Double-stranded RNA-spe 99.4 3.2E-13 1.1E-17 104.0 7.3 66 1-70 5-71 (73)
46 3rv0_A K. polysporus DCR1; RNA 99.4 5E-15 1.7E-19 144.8 -3.6 144 3-155 170-322 (341)
47 1x49_A Interferon-induced, dou 99.4 3.7E-13 1.3E-17 109.7 6.6 68 2-71 16-84 (97)
48 1whq_A RNA helicase A; double- 99.4 5E-13 1.7E-17 109.3 6.0 70 1-72 7-77 (99)
49 1x48_A Interferon-induced, dou 99.4 1.2E-12 4E-17 104.9 7.7 68 1-71 7-75 (88)
50 3llh_A RISC-loading complex su 99.4 1.1E-12 3.9E-17 105.2 7.5 68 1-71 15-83 (90)
51 1uil_A Double-stranded RNA-bin 99.3 2.9E-12 9.8E-17 107.2 9.4 69 2-72 28-101 (113)
52 2dmy_A Spermatid perinuclear R 99.3 1.6E-12 5.6E-17 105.7 7.1 66 1-70 17-83 (97)
53 1x47_A DGCR8 protein; structur 99.3 3.4E-12 1.2E-16 104.1 8.1 67 2-71 18-85 (98)
54 2l33_A Interleukin enhancer-bi 99.3 1.5E-12 5.1E-17 105.2 5.7 66 1-70 15-81 (91)
55 1t4n_A Ribonuclease III; DSRBD 99.3 1.4E-12 4.8E-17 106.1 5.2 67 2-70 8-75 (94)
56 1whn_A Hypothetical protein ri 99.3 5.4E-12 1.8E-16 107.9 8.9 67 1-70 27-94 (128)
57 1t4o_A Ribonuclease III; RNT1P 99.2 4.4E-12 1.5E-16 106.9 5.0 68 2-71 10-78 (117)
58 2ljh_A Double-stranded RNA-spe 99.2 1E-11 3.5E-16 104.2 5.5 64 1-71 38-102 (114)
59 2b7v_A Double-stranded RNA-spe 99.2 4.6E-11 1.6E-15 91.3 7.4 63 1-70 5-68 (71)
60 2l3j_A Double-stranded RNA-spe 99.2 5.6E-11 1.9E-15 110.5 9.3 68 84-154 3-72 (236)
61 3c4b_A Endoribonuclease dicer; 99.2 1.1E-11 3.8E-16 115.9 3.6 98 41-153 166-263 (265)
62 3p1x_A Interleukin enhancer-bi 99.1 1E-10 3.5E-15 90.8 6.0 65 3-71 7-72 (75)
63 2nug_A Ribonuclease III, RNAse 99.0 3E-10 1E-14 103.8 6.3 66 2-69 152-218 (221)
64 1o0w_A Ribonuclease III, RNAse 99.0 3.7E-10 1.3E-14 105.4 7.0 68 2-70 181-249 (252)
65 2a11_A Ribonuclease III, RNAse 98.9 2.4E-10 8.3E-15 105.7 0.0 70 2-72 164-233 (242)
66 3n3w_A Ribonuclease III; nucle 98.8 2.9E-10 9.8E-15 106.3 0.0 68 2-70 179-247 (248)
67 3rv0_A K. polysporus DCR1; RNA 98.1 2.8E-07 9.5E-12 90.1 0.0 64 2-71 256-321 (341)
68 3c4b_A Endoribonuclease dicer; 97.6 5E-05 1.7E-09 70.7 5.1 65 2-70 199-263 (265)
69 2kou_A Dicer-like protein 4; A 96.5 0.0059 2E-07 49.7 7.2 71 85-156 4-83 (102)
70 2qvw_A GLP_546_48378_50642; di 94.8 0.0018 6.1E-08 69.3 -3.5 108 3-155 375-499 (756)
71 2db2_A KIAA0890 protein; DSRM 89.9 1.1 3.7E-05 37.4 7.5 72 83-154 15-90 (119)
72 3htx_A HEN1; HEN1, small RNA m 88.4 0.37 1.3E-05 52.6 4.8 68 84-155 16-97 (950)
73 2kou_A Dicer-like protein 4; A 72.9 4.5 0.00015 32.5 4.8 66 3-72 7-82 (102)
74 1tac_A TAT protein; transcript 46.9 8.1 0.00028 30.5 1.7 37 304-341 41-77 (86)
75 3htx_A HEN1; HEN1, small RNA m 40.3 22 0.00076 38.9 4.4 70 85-154 394-504 (950)
76 3mi9_C Protein TAT; P-TEFB, HI 37.2 7.7 0.00026 30.6 0.2 35 306-341 43-77 (86)
77 3k6q_A Putative ligand binding 32.9 95 0.0033 26.5 6.3 60 87-155 40-99 (139)
78 3o2r_A Ribonuclease III; struc 27.4 1.4 4.8E-05 38.5 -6.2 55 3-63 101-162 (170)
79 2db2_A KIAA0890 protein; DSRM 21.0 1.3E+02 0.0044 24.9 4.8 67 2-73 19-92 (119)
No 1
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.96 E-value=4.1e-29 Score=223.32 Aligned_cols=152 Identities=24% Similarity=0.258 Sum_probs=130.0
Q ss_pred ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcC-CC-
Q 018960 1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE-GC- 77 (348)
Q Consensus 1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e-~~- 77 (348)
+||+.||||||++++. |.|.++. .|+.|.+.|++.|+++|..|.. |.|.|||+||+.||+.+|..|....... +.
T Consensus 14 n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~-G~G~sKK~Aeq~AA~~al~~L~~~~~~~~p~~ 91 (179)
T 1qu6_A 14 FFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPE-GEGRSKKEAKNAAAKLAVEILNKEKKAVSPLL 91 (179)
T ss_dssp SHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCE-EECCSSHHHHHHHHHHHHHHHHSCCSCCSCSS
T ss_pred CHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEe-cCCCCHHHHHHHHHHHHHHHHhcccccCCCcc
Confidence 4899999999999986 8999875 8999999999999999987765 4899999999999999999997643210 00
Q ss_pred -C----CCCCCCCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHH
Q 018960 78 -P----LINQDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151 (348)
Q Consensus 78 -~----~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L 151 (348)
+ ..+....||++.||||||++++.+ .|++... ++|.+.|+|+|.|+|..|+.|.|+|||+||+.||+.||..|
T Consensus 92 ~~~~~~~e~~~~~n~~~~L~E~~qk~~~~~-~Y~~~~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al~~L 170 (179)
T 1qu6_A 92 LTTTNSSEGLSMGNYIGLINRIAQKKRLTV-NYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 170 (179)
T ss_dssp CCCSCSSCCCCCCCCHHHHHHHHHHSCCEE-EEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccccCCCCHHHHHHHHHHhcCCcc-eEEecCcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHHHHH
Confidence 0 011245799999999999999987 9998655 57999999999999998899999999999999999999999
Q ss_pred HhhC
Q 018960 152 LVTS 155 (348)
Q Consensus 152 ~~~s 155 (348)
....
T Consensus 171 ~~~~ 174 (179)
T 1qu6_A 171 LSEE 174 (179)
T ss_dssp HHCC
T ss_pred hccc
Confidence 7654
No 2
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.94 E-value=3.4e-27 Score=219.57 Aligned_cols=173 Identities=24% Similarity=0.242 Sum_probs=128.4
Q ss_pred ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcC-CC-
Q 018960 1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE-GC- 77 (348)
Q Consensus 1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e-~~- 77 (348)
.||+.||||||++++.+|.|.++. .|+. +.|++.|.++|..|..| .|.|||+|++.||+.||..|....... +.
T Consensus 23 d~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G-~G~SKK~Aeq~AA~~aL~~L~~~~~~~~~~~ 99 (232)
T 2yt4_A 23 SEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSG-TASSKKLAKNKAARATLEILIPDFVKQTSEE 99 (232)
T ss_dssp CHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHSTTTTTC----
T ss_pred CHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeec-CCCCHHHHHHHHHHHHHHHHHhhccccCCcc
Confidence 389999999999999899999976 6887 99999999999988764 899999999999999999997642210 00
Q ss_pred --------------CCC---------CCCCCChhHHHHHHHHHcCCCCCcEE--Eeec--CCCCCcEEEEEEECCEEeee
Q 018960 78 --------------PLI---------NQDTVFCKSILNEFAVKMNLELPAYS--TRQS--EALLPVFVSSLVFNGVTYTG 130 (348)
Q Consensus 78 --------------~~~---------~~~~~npKs~LQE~cQk~~~~~P~Y~--~v~e--pgH~~~F~v~V~I~g~~~~~ 130 (348)
... .....|||+.||| ||++++.+|.|+ ++.+ ++|.+.|+|+|. + .++.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~--~-~~~~ 175 (232)
T 2yt4_A 100 KPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG--K-HTVR 175 (232)
T ss_dssp ----CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET--T-EEEE
T ss_pred ccccccchhhcccccccCCcccccccccCCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE--E-EEEE
Confidence 000 0124599999999 999999999999 5554 569999999986 4 4678
Q ss_pred eecCCHHHHHHHHHHHHHHHHHhhC-CChhHHHHHHHhhhhHHHhh--hcccCCcccceee
Q 018960 131 EPGRSKKEAEQLAARAVIRTLLVTS-GSATILSEIIKSKGKLYAAL--NKVKESNYSTQKI 188 (348)
Q Consensus 131 G~G~SKKeAKq~AA~~AL~~L~~~s-~~~~ll~e~i~sk~~l~~~~--~k~k~~~~s~qk~ 188 (348)
|.|+|||+|||.||+.||+.|.... +|++++ .+|+.. +.+++....+|.|
T Consensus 176 G~G~sKK~Aeq~AA~~aL~~L~~~~~~~~~l~--------~~~g~~~~~~~~~~~~~~~~~ 228 (232)
T 2yt4_A 176 GWCKNKRVGKQLASQKILQLLHPHVKNWGSLL--------RMYGRESSKMVKQETSDKSVI 228 (232)
T ss_dssp EEESSHHHHHHHHHHHHHHHHSTTCCBHHHHH--------HHHTTC---------------
T ss_pred EEeCCHHHHHHHHHHHHHHHHHhhccchhHHH--------HHhccccccccchhhhhhhee
Confidence 9999999999999999999998754 677777 567743 4457777888877
No 3
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.90 E-value=6e-23 Score=191.16 Aligned_cols=144 Identities=27% Similarity=0.281 Sum_probs=118.8
Q ss_pred ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhc-----
Q 018960 1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKD----- 74 (348)
Q Consensus 1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~----- 74 (348)
.||+.|++|++.. .+|.|.++. .|+.|++.|++.|.++|..| .|.|.|||+|++.||+.||..|......
T Consensus 5 ~~K~~l~~l~e~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~--~G~G~SKK~Aeq~AA~~al~~l~~~~~~~~~~~ 80 (236)
T 2l3j_A 5 LPKNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQVF--EGSGPTKKKAKLHAAEKALRSFVQFPNASEAHL 80 (236)
T ss_dssp CTHHHHHHHHHHC--SSCEEEEEEEESCTTSCEEEEEEEETTEEE--EEEESHHHHHHHHHHHHHHHHHTTCSSCSCCCC
T ss_pred CCcCHHHHHhhcC--CCceEEEEeccCCCCCCeEEEEEEECCEEE--EEecCChHHHHHHHHHHHHHHHHhccccccchh
Confidence 4799999999874 489999976 79999999999999999887 3689999999999999999998753200
Q ss_pred --------------C--CC---------C-------------------------C--------------------CCCCC
Q 018960 75 --------------E--GC---------P-------------------------L--------------------INQDT 84 (348)
Q Consensus 75 --------------e--~~---------~-------------------------~--------------------~~~~~ 84 (348)
+ +. . + .....
T Consensus 81 amg~~~~~~~d~~~d~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~~~ 160 (236)
T 2l3j_A 81 AMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPPSG 160 (236)
T ss_dssp SCCCCCCCTTSCCSCCSCCCCCCCCCCCCSSSSCCCSSCSSSCSSSSSCSCCCSSCCCCCCCCSSSCSSSSCCCCCCCSS
T ss_pred hhccCCCCCCCCcccccccchhhcccccccccccccccccccccccccccchhhccccccccccccccCccccccCCCCC
Confidence 0 00 0 0 00023
Q ss_pred CChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960 85 VFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT 154 (348)
Q Consensus 85 ~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~ 154 (348)
.|||++|||| +..|.|+++.+ ++|.++|+|+|.|+|..+ .|.|+|||+|||.||+.||+.|...
T Consensus 161 ~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~sKK~Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 161 KNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL 226 (236)
T ss_dssp CCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHccc
Confidence 6999999999 56789999876 569999999999999876 8999999999999999999999643
No 4
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.78 E-value=4.9e-19 Score=137.95 Aligned_cols=70 Identities=31% Similarity=0.571 Sum_probs=65.4
Q ss_pred CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960 84 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV 153 (348)
Q Consensus 84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~ 153 (348)
..|||+.||||||++++.+|.|+++.+ ++|++.|+|.|.|+|..++.|.|+|||+|||.||+.||..|..
T Consensus 3 ~~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 3 HGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp CHHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 368999999999999999999999876 5799999999999999999999999999999999999999864
No 5
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.78 E-value=9.9e-19 Score=134.98 Aligned_cols=69 Identities=35% Similarity=0.531 Sum_probs=65.0
Q ss_pred CCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCcEEEEEEECCEEeeeeec-CCHHHHHHHHHHHHHHHHH
Q 018960 84 TVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPG-RSKKEAEQLAARAVIRTLL 152 (348)
Q Consensus 84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~~F~v~V~I~g~~~~~G~G-~SKKeAKq~AA~~AL~~L~ 152 (348)
..|||+.||||||++++.+|.|+++.+ |+|++.|+|.|.|+|..++.|.| +|||+|||.||+.||..|.
T Consensus 2 ~~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 2 SHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CCSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 469999999999999999999999987 57999999999999999999999 9999999999999999884
No 6
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.76 E-value=2.1e-18 Score=138.74 Aligned_cols=73 Identities=25% Similarity=0.205 Sum_probs=66.8
Q ss_pred CCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhC
Q 018960 82 QDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS 155 (348)
Q Consensus 82 ~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s 155 (348)
....|||+.||||||++++.+|.|+++.+ ++|.+.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|...+
T Consensus 13 ~~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~s 87 (89)
T 2cpn_A 13 QSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSGPS 87 (89)
T ss_dssp CCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHhhc
Confidence 34679999999999999999999999876 5799999999999998 8999999999999999999999997544
No 7
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.76 E-value=1.7e-18 Score=132.16 Aligned_cols=65 Identities=23% Similarity=0.280 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHH
Q 018960 87 CKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL 152 (348)
Q Consensus 87 pKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~ 152 (348)
|++.||||||++++..|.|+++.+ ++|++.|+|.|.|+|. ++.|.|+|||+|||.||+.||..|.
T Consensus 2 p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999876 5699999999999998 9999999999999999999999885
No 8
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.76 E-value=3.4e-18 Score=137.27 Aligned_cols=71 Identities=23% Similarity=0.204 Sum_probs=65.6
Q ss_pred CCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960 82 QDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV 153 (348)
Q Consensus 82 ~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~ 153 (348)
....|||+.||||||++++.+|.|+++.+ ++|.+.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|..
T Consensus 12 ~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~ 84 (88)
T 3adl_A 12 PRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHT 84 (88)
T ss_dssp CTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHc
Confidence 34579999999999999999999999876 5799999999999998 89999999999999999999999964
No 9
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.75 E-value=5.8e-18 Score=136.11 Aligned_cols=69 Identities=20% Similarity=0.084 Sum_probs=64.5
Q ss_pred CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960 84 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV 153 (348)
Q Consensus 84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~ 153 (348)
..|||+.||||||++++.+|.|+++.+ ++|++.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|..
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHhc
Confidence 579999999999999999999999876 5799999999999997 89999999999999999999999963
No 10
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.74 E-value=2.9e-18 Score=136.75 Aligned_cols=70 Identities=21% Similarity=0.240 Sum_probs=63.3
Q ss_pred CChhHHHHHHHHHc-----CCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960 85 VFCKSILNEFAVKM-----NLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT 154 (348)
Q Consensus 85 ~npKs~LQE~cQk~-----~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~ 154 (348)
.|||+.||||||++ ++..|.|+++.+ |+|++.|+|.|.|+|..++.|.|+|||+|||.||+.||..|...
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~~ 77 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFP 77 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCSS
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhHh
Confidence 48999999999984 678899999876 57999999999999999999999999999999999999887543
No 11
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.73 E-value=7.1e-18 Score=139.02 Aligned_cols=77 Identities=32% Similarity=0.482 Sum_probs=65.9
Q ss_pred CCCCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCcEEEEEEECCEEeeeeec-CCHHHHHHHHHHHHHHHHHhhCCCh
Q 018960 82 QDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPG-RSKKEAEQLAARAVIRTLLVTSGSA 158 (348)
Q Consensus 82 ~~~~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~~F~v~V~I~g~~~~~G~G-~SKKeAKq~AA~~AL~~L~~~s~~~ 158 (348)
....|||+.||||||++++.+|.|+++.+ ++|++.|+|.|.|+|..++.|.| +|||+|||.||+.||..|.......
T Consensus 14 ~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~~~~ 92 (103)
T 2l2n_A 14 SNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSSELS 92 (103)
T ss_dssp -----CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHHC---
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhcccccc
Confidence 34679999999999999999999999987 57999999999999999999999 9999999999999999998776543
No 12
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.73 E-value=1.3e-17 Score=132.44 Aligned_cols=70 Identities=26% Similarity=0.354 Sum_probs=64.2
Q ss_pred CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960 83 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT 154 (348)
Q Consensus 83 ~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~ 154 (348)
...|||+.||||||+++ ..|.|+++.+ ++|++.|+|.|.|+| .++.|.|+|||+|||.||+.||+.|...
T Consensus 6 ~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T 2dix_A 6 SGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKAN 77 (84)
T ss_dssp CCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhcc
Confidence 45799999999999998 6899999876 579999999999999 8899999999999999999999999754
No 13
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.73 E-value=2.3e-18 Score=133.91 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=63.9
Q ss_pred CCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHH
Q 018960 82 QDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL 152 (348)
Q Consensus 82 ~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~ 152 (348)
....|||+.||||||++++. |.|+++.+ ++|.+.|+|.|.|+| .++.|.|+|||+|||.||+.||..|.
T Consensus 4 ~~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~ 74 (76)
T 1ekz_A 4 GDKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQ 74 (76)
T ss_dssp CCCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHh
Confidence 34679999999999999999 99999876 579999999999999 88999999999999999999999885
No 14
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=134.47 Aligned_cols=72 Identities=24% Similarity=0.285 Sum_probs=58.8
Q ss_pred CCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhC
Q 018960 82 QDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS 155 (348)
Q Consensus 82 ~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s 155 (348)
....|||+.||||||+++. .|.|+++.+ ++|++.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|....
T Consensus 11 ~~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~L~~~~ 84 (90)
T 3llh_A 11 NPGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKHLKGGS 84 (90)
T ss_dssp --CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC---
T ss_pred ccCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHHHHhcc
Confidence 3468999999999999875 799999876 5799999999999997 6889999999999999999999997664
No 15
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.72 E-value=1.2e-17 Score=136.37 Aligned_cols=74 Identities=19% Similarity=0.234 Sum_probs=67.0
Q ss_pred CCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhCC
Q 018960 82 QDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSG 156 (348)
Q Consensus 82 ~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s~ 156 (348)
....|||+.||||||++++. |.|+++.+ ++|.+.|+|.|.|+|+.++.|.|+|||+|||.||+.||+.|.....
T Consensus 11 ~~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 86 (97)
T 1x49_A 11 DTPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENK 86 (97)
T ss_dssp CCTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhhcC
Confidence 34679999999999999997 79998865 5799999999999999899999999999999999999999976554
No 16
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.71 E-value=6e-18 Score=155.04 Aligned_cols=133 Identities=23% Similarity=0.174 Sum_probs=104.4
Q ss_pred HHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHH-hhhhcC
Q 018960 3 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECIS-KKIKDE 75 (348)
Q Consensus 3 KS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~-~~~~~e 75 (348)
...|.++|.+++ +..|...+.|+.. .++..| |++|.++|. ....++++..+.+...+. ....
T Consensus 77 ~~~la~~a~~l~--l~~~l~~~~~~~~-----~~~lad~~EAliGAiyld~g~--~~~~~~~~i~~~~~~~~~~~~~~-- 145 (221)
T 2nug_A 77 EEFFNLLAQKLE--LHKFIRIKRGKIN-----ETIIGDVFEALWAAVYIDSGR--DANFTRELFYKLFKEDILSAIKE-- 145 (221)
T ss_dssp HHHHHHHHHTTT--GGGTCBSCTTCCC-----HHHHHHHHHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHcC--hHHhhccCCCccc-----chHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhhhhhc--
Confidence 467899999998 7788877766543 333444 889999762 233388887766545444 2211
Q ss_pred CCCCCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHH
Q 018960 76 GCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL 152 (348)
Q Consensus 76 ~~~~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~ 152 (348)
.....|||+.||||||++++..|.|+++.+ ++|.+.|+|.|.|+|. ++.|.|+|||+|||.||+.||+.|.
T Consensus 146 -----~~~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~skK~Ae~~AA~~AL~~L~ 218 (221)
T 2nug_A 146 -----GRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLE 218 (221)
T ss_dssp -----TCSCCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred -----cccccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHHHhh
Confidence 122579999999999999999999999876 5699999999999999 9999999999999999999999985
No 17
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.70 E-value=5.7e-17 Score=132.48 Aligned_cols=74 Identities=30% Similarity=0.337 Sum_probs=66.9
Q ss_pred CCCCCChhHHHHHHHHHcCCCCCcEEEeecCCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960 81 NQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT 154 (348)
Q Consensus 81 ~~~~~npKs~LQE~cQk~~~~~P~Y~~v~epgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~ 154 (348)
+.+..|||+.||||||++++.+|.|+++.+.|..+.|+|.|.|+|..++.|.|+|||+|||.||+.||+.|...
T Consensus 12 ~~~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (98)
T 1x47_A 12 NPNGKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD 85 (98)
T ss_dssp CTTCCCHHHHHHHHHHHHTCSCCEEEEEECSSSSCCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSS
T ss_pred cCCCCCHHHHHHHHHHHcCCCCCeEEEEEeECCCCcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence 34678999999999999999999999998744349999999999999999999999999999999999999743
No 18
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.70 E-value=4.7e-17 Score=125.67 Aligned_cols=67 Identities=25% Similarity=0.308 Sum_probs=61.0
Q ss_pred CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960 84 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV 153 (348)
Q Consensus 84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~ 153 (348)
..|||+.||||||+ +..|.|+++.+ ++|+++|+|.|.|+|..+ .|.|+|||+|||.||+.||+.|..
T Consensus 3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhc
Confidence 46999999999995 77899999876 579999999999999887 899999999999999999999863
No 19
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.69 E-value=4e-17 Score=133.77 Aligned_cols=70 Identities=23% Similarity=0.203 Sum_probs=63.4
Q ss_pred CCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCcEEEEEEECC-EEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960 84 TVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNG-VTYTGEPGRSKKEAEQLAARAVIRTLLVT 154 (348)
Q Consensus 84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~~F~v~V~I~g-~~~~~G~G~SKKeAKq~AA~~AL~~L~~~ 154 (348)
..|||+.||||||++ +..|.|++... ++|++.|+|.|.|+| ..++.|.|+|||+|||.||+.||+.|...
T Consensus 5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 76 (99)
T 1whq_A 5 SSGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRI 76 (99)
T ss_dssp CCSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Confidence 469999999999999 88999999333 579999999999999 68999999999999999999999999744
No 20
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.69 E-value=5.7e-18 Score=158.44 Aligned_cols=139 Identities=23% Similarity=0.219 Sum_probs=105.8
Q ss_pred HHHHHHHHHHcCCCCCceEEeccCCCCC-CceEEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcC
Q 018960 3 KNRLQEHAQRSGIPLPVYQSHNEGFQHA-PKFRASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE 75 (348)
Q Consensus 3 KS~LqE~~QK~g~~LP~Y~lv~~Gp~H~-~~Ft~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e 75 (348)
...|.++|.+++ +..|...+.|+... .+-..++..| |++|+++| ...++++..+.+...+.....
T Consensus 103 ~~~la~~a~~lg--L~~~l~~~~~e~~~~~~~~~~~lad~~EAliGAiyld~g----~~~~~~~i~~~~~~~~~~~~~-- 174 (252)
T 1o0w_A 103 EEVLAMVSRKMN--LGKFLFLGKGEEKTGGRDRDSILADAFEALLAAIYLDQG----YEKIKELFEQEFEFYIEKIMK-- 174 (252)
T ss_dssp HHHHHHHHHHTT--HHHHCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHcC--cHHhhccCchhhhcCCCCCccHHHhHHHHHHHHHHHcCC----HHHHHHHHHHHHHHHHHHhhh--
Confidence 467899999998 77787766443221 1222344445 88999986 677877776664444433221
Q ss_pred CCCCCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960 76 GCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV 153 (348)
Q Consensus 76 ~~~~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~ 153 (348)
.....|||+.||||||++++..|.|+++.+ ++|.+.|+|.|.|+|+.++.|.|+|||+|||.||+.||+.|..
T Consensus 175 -----~~~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~ 249 (252)
T 1o0w_A 175 -----GEMLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLLK 249 (252)
T ss_dssp -----TCCCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC-
T ss_pred -----cccccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 123579999999999999999999999875 5699999999999999999999999999999999999999864
Q ss_pred h
Q 018960 154 T 154 (348)
Q Consensus 154 ~ 154 (348)
.
T Consensus 250 ~ 250 (252)
T 1o0w_A 250 E 250 (252)
T ss_dssp -
T ss_pred c
Confidence 3
No 21
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.68 E-value=8.2e-17 Score=137.73 Aligned_cols=71 Identities=28% Similarity=0.280 Sum_probs=66.8
Q ss_pred CCCChhHHHHHHHHHcCCCCCcEEEeecCCCCCcEEEEEEECCEEeeeeec-CCHHHHHHHHHHHHHHHHHhh
Q 018960 83 DTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPG-RSKKEAEQLAARAVIRTLLVT 154 (348)
Q Consensus 83 ~~~npKs~LQE~cQk~~~~~P~Y~~v~epgH~~~F~v~V~I~g~~~~~G~G-~SKKeAKq~AA~~AL~~L~~~ 154 (348)
...|||+.||||||++++.+|.|+++.+ +|++.|+|.|.|+|..++.|.| +|||+|||.||+.||+.|...
T Consensus 24 ~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~-~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~ 95 (128)
T 1whn_A 24 PQITPKMCLLEWCRREKLPQPVYETVQR-TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLP 95 (128)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCCCCEEEC-SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred cCCCHHHHHHHHHHHcCCCCCeEEEEee-cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhcc
Confidence 3579999999999999999999999988 9999999999999999999999 999999999999999999643
No 22
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.68 E-value=2.8e-17 Score=133.82 Aligned_cols=71 Identities=18% Similarity=0.040 Sum_probs=63.8
Q ss_pred CCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCcEEEEEEECCE-EeeeeecCCHHHHHHHHHHHHHHHHHhhC
Q 018960 84 TVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGV-TYTGEPGRSKKEAEQLAARAVIRTLLVTS 155 (348)
Q Consensus 84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~~F~v~V~I~g~-~~~~G~G~SKKeAKq~AA~~AL~~L~~~s 155 (348)
..|||+.||||+|++ ...|.|+++.+ |+|++.|++.|.|+|. .++.|.|+|||+|||.||+.||..|....
T Consensus 5 ~~D~KT~LQE~~Q~~-~~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l~ 77 (94)
T 1t4n_A 5 DMNAKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLD 77 (94)
T ss_dssp CHHHHHHHHHHTCSS-SSCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHHHHH
T ss_pred CCCchHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 569999999999997 56899999877 5799999999999998 89999999999999999999999885443
No 23
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.68 E-value=1.6e-16 Score=129.50 Aligned_cols=71 Identities=23% Similarity=0.229 Sum_probs=63.9
Q ss_pred CCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960 81 NQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT 154 (348)
Q Consensus 81 ~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~ 154 (348)
+....|||+.||||||++ ..|.|+++.+ ++|++.|+|.|.|+|..+ .|.|+|||+|||.||+.||+.|...
T Consensus 12 ~~~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~~ 84 (97)
T 2dmy_A 12 DSKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGYP 84 (97)
T ss_dssp CCCSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTCC
T ss_pred cCCCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCCC
Confidence 455689999999999996 6899999875 579999999999999988 8999999999999999999999643
No 24
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.67 E-value=1.5e-16 Score=127.57 Aligned_cols=70 Identities=29% Similarity=0.418 Sum_probs=63.2
Q ss_pred CCChhHHHHHHHHHcCCCCCcEEEeec-CCCCC-cEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhC
Q 018960 84 TVFCKSILNEFAVKMNLELPAYSTRQS-EALLP-VFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS 155 (348)
Q Consensus 84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~-~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s 155 (348)
..|||+.||||||++++.+ .|+ ... ++|++ +|+|.|.|+|+.++.|.|+|||+|||.||+.||+.|....
T Consensus 5 ~~d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 76 (88)
T 1x48_A 5 SSGYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSP 76 (88)
T ss_dssp SSCHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhcC
Confidence 4699999999999999976 999 333 67999 7999999999999999999999999999999999997653
No 25
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.66 E-value=5.4e-17 Score=136.81 Aligned_cols=88 Identities=19% Similarity=0.027 Sum_probs=66.4
Q ss_pred CCCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCcEEEEEEECCE-EeeeeecCCHHHHHHHHHHHHHHHHHhhCCChhH
Q 018960 83 DTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGV-TYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATI 160 (348)
Q Consensus 83 ~~~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~~F~v~V~I~g~-~~~~G~G~SKKeAKq~AA~~AL~~L~~~s~~~~l 160 (348)
...|||+.||||||+. ...|.|+++.+ |+|++.|++.|.|+|. .++.|.|+|||+|||.||+.||..|....-++.+
T Consensus 6 ~~~D~KT~LQE~~Q~~-~~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l~Ky~~~ 84 (117)
T 1t4o_A 6 LDMNAKRQLYSLIGYA-SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKMLDFYAKQ 84 (117)
T ss_dssp CCTTHHHHHHHHHCCG-GGCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHHHHHTC-
T ss_pred CCCCchHHHHHHHcCC-CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999994 57899999887 5699999999999998 8999999999999999999999988655444444
Q ss_pred HHHHHHhhhhH
Q 018960 161 LSEIIKSKGKL 171 (348)
Q Consensus 161 l~e~i~sk~~l 171 (348)
-+++.++.+.+
T Consensus 85 r~~~~r~~s~~ 95 (117)
T 1t4o_A 85 RAAIPRSESVL 95 (117)
T ss_dssp -----------
T ss_pred HhhcCCcccee
Confidence 45555554444
No 26
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.65 E-value=3.1e-16 Score=131.32 Aligned_cols=69 Identities=23% Similarity=0.267 Sum_probs=62.2
Q ss_pred CChhHHHHHHHHHcCCCCCcEEEeec-CCCCCcEEEEEEE-----CCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960 85 VFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVF-----NGVTYTGEPGRSKKEAEQLAARAVIRTLLVT 154 (348)
Q Consensus 85 ~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~~F~v~V~I-----~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~ 154 (348)
.|||+.||||||++++ .|.|++... |+|++.|+|.|.| +|..++.|.|+|||+|||.||+.||+.|...
T Consensus 26 ~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~ 100 (113)
T 1uil_A 26 ENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHL 100 (113)
T ss_dssp HHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhc
Confidence 5999999999999999 899994333 6799999999999 6888999999999999999999999999754
No 27
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.64 E-value=4.3e-16 Score=126.02 Aligned_cols=69 Identities=23% Similarity=0.214 Sum_probs=62.7
Q ss_pred CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhC
Q 018960 84 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS 155 (348)
Q Consensus 84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s 155 (348)
..++|+.||||||+++ .|.|+++.+ ++|+++|+|.|.|+|..+ .|.|+|||+|||.||+.||+.|....
T Consensus 13 ~~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~ 83 (91)
T 2l33_A 13 TKHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDT 83 (91)
T ss_dssp CSSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCC
T ss_pred ccCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhhcC
Confidence 4689999999999998 789999876 679999999999999887 89999999999999999999997554
No 28
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.64 E-value=1.7e-18 Score=162.09 Aligned_cols=137 Identities=19% Similarity=0.144 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCCCCceEEeccCCCCC-CceEEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcC
Q 018960 3 KNRLQEHAQRSGIPLPVYQSHNEGFQHA-PKFRASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE 75 (348)
Q Consensus 3 KS~LqE~~QK~g~~LP~Y~lv~~Gp~H~-~~Ft~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e 75 (348)
...|.+++.++| |..|+..+.|+... .+...++..| |++|.++| ...|+++..+.+...+....
T Consensus 101 ~~~La~~a~~lg--L~~~l~~~~~e~~~~g~~~~~~lad~fEAliGAiyld~G----~~~~~~~i~~~~~~~l~~~~--- 171 (248)
T 3n3w_A 101 EKSFAKIANSLN--LGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAG----FEFAKTIALRLIEKNFPQID--- 171 (248)
T ss_dssp HHHHHHHHHHTT--GGGTCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHcC--cHHHhhcCchhhhcCCCCCccHHHHHHHHHHHHHHHHCC----hHHHHHHHHHHHHHHHHHhh---
Confidence 367999999999 78888876543221 2233345555 89999986 57777776554322221110
Q ss_pred CCCCCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHH
Q 018960 76 GCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL 152 (348)
Q Consensus 76 ~~~~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~ 152 (348)
......|||+.||||||++++..|.|+++.+ ++|.+.|+|.|.|+|+.++.|.|+|||+|||.||+.||+.|.
T Consensus 172 ----~~~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~ 246 (248)
T 3n3w_A 172 ----AKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLG 246 (248)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred ----ccccccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHH
Confidence 1123579999999999999999999999866 469999999999999999999999999999999999999885
No 29
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.60 E-value=1.2e-17 Score=155.01 Aligned_cols=140 Identities=25% Similarity=0.251 Sum_probs=39.7
Q ss_pred HHHHHHHHHHc---CCCCCceEEeccCCCCC-CceEEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhh
Q 018960 3 KNRLQEHAQRS---GIPLPVYQSHNEGFQHA-PKFRASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECISKKI 72 (348)
Q Consensus 3 KS~LqE~~QK~---g~~LP~Y~lv~~Gp~H~-~~Ft~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~ 72 (348)
...|.++|.++ + |..|...+.|+... .+...++..| |++|.++| ...++++..+.+...+....
T Consensus 83 ~~~la~~a~~l~~~g--L~~~l~~~~~e~~~~~~~~~~~lad~~EAliGAiyld~g----~~~~~~~i~~~~~~~~~~~~ 156 (242)
T 2a11_A 83 TQALADVARRLCAEG--LGVHVLLGRGEANTGGADKSSILADGMESLLGAIYLQHG----MEKAREVILRLFGPLLDAAP 156 (242)
T ss_dssp HHHHHHHHHHHSSSC--SGGGCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHhhhhC--hHHHhhcCchhhhcCCCCCccHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHhh
Confidence 35789999999 7 77888776544221 2223344444 88999976 57777776665444333221
Q ss_pred hcCCCCCCCCCCCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHH
Q 018960 73 KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 151 (348)
Q Consensus 73 ~~e~~~~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~e-pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L 151 (348)
......|||+.||||||++++..|.|+++.. ++|.+.|+|.|.++|+.++.|.|+|||+|||.||+.||+.|
T Consensus 157 -------~~~~~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L 229 (242)
T 2a11_A 157 -------TLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKAL 229 (242)
T ss_dssp -------C------------------------------------------------------------------------
T ss_pred -------hccccCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHH
Confidence 0123569999999999999999999999875 46999999999999998999999999999999999999999
Q ss_pred HhhC
Q 018960 152 LVTS 155 (348)
Q Consensus 152 ~~~s 155 (348)
....
T Consensus 230 ~~~~ 233 (242)
T 2a11_A 230 EVLD 233 (242)
T ss_dssp ----
T ss_pred hhcc
Confidence 7543
No 30
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.59 E-value=1.6e-15 Score=115.67 Aligned_cols=67 Identities=24% Similarity=0.307 Sum_probs=62.2
Q ss_pred ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHH
Q 018960 1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECIS 69 (348)
Q Consensus 1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~ 69 (348)
||++.||||||++++.+|.|.++. +|++|++.|++.|.++|. +.. |.|+|||+|++.||+.+|..|.
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~-G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VET-GSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEE-EEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEE-eecCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999876 899999999999999997 665 4899999999999999998874
No 31
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.59 E-value=1.7e-15 Score=127.17 Aligned_cols=66 Identities=27% Similarity=0.334 Sum_probs=60.0
Q ss_pred CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960 83 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT 154 (348)
Q Consensus 83 ~~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~ 154 (348)
...|||+.||||||+ |.|+++.+ ++|+++|+|+|.|+|..+ .|.|+|||+|||+||+.||+.|...
T Consensus 35 ~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~ 102 (114)
T 2ljh_A 35 QPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQF 102 (114)
T ss_dssp CCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcC
Confidence 457999999999984 89999876 579999999999999999 8999999999999999999999754
No 32
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.59 E-value=5.1e-15 Score=114.10 Aligned_cols=68 Identities=44% Similarity=0.612 Sum_probs=63.3
Q ss_pred ChHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCC-CchHHHHHHHHHHHHHHHH
Q 018960 1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTF-SHRKAAEQDVAKIALECIS 69 (348)
Q Consensus 1 myKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~G-sSKKeAKq~AAk~aL~~L~ 69 (348)
.||+.||||||++++.+|.|.++.+|+.|++.|++.|.++|..|..| .| +|||+|++.||+.||..|.
T Consensus 4 d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 4 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSL-PGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp SHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECC-SCBSSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEee-eccCCHHHHHHHHHHHHHHHhh
Confidence 48999999999999999999999899999999999999999888775 89 8999999999999998874
No 33
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.59 E-value=4.8e-15 Score=113.68 Aligned_cols=65 Identities=29% Similarity=0.291 Sum_probs=58.5
Q ss_pred CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960 84 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT 154 (348)
Q Consensus 84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~ 154 (348)
..||++.||||| ..|.|+++.+ ++|++.|+|.|.|+|..+ .|.|+|||+|||.||+.||+.|...
T Consensus 3 ~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~SKK~Aeq~AA~~al~~L~~~ 69 (71)
T 2b7v_A 3 GKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL 69 (71)
T ss_dssp SSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHHHhc
Confidence 579999999993 6789999876 579999999999999876 8999999999999999999998753
No 34
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.55 E-value=1.3e-14 Score=112.81 Aligned_cols=69 Identities=32% Similarity=0.518 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960 1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 70 (348)
Q Consensus 1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~ 70 (348)
+||+.||||||++++.+|.|.++. +|+.|++.|++.|.++|..|..| .|+|||+|++.||+.||..|..
T Consensus 5 n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 5 LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGA-ATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECC-CBSSHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEe-ccCCHHHHHHHHHHHHHHHHhh
Confidence 489999999999999999999876 79999999999999999888765 8999999999999999998854
No 35
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=99.55 E-value=4.4e-15 Score=132.40 Aligned_cols=70 Identities=24% Similarity=0.300 Sum_probs=64.6
Q ss_pred CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960 84 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT 154 (348)
Q Consensus 84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~ 154 (348)
..|||+.||||||++++. |.|+++.+ ++|.+.|+|.|.|+|..++.|.|+|||+|||.||+.||+.|...
T Consensus 12 ~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~ 83 (179)
T 1qu6_A 12 AGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKE 83 (179)
T ss_dssp SCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhcc
Confidence 469999999999999987 89999876 57999999999999998999999999999999999999999754
No 36
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=99.50 E-value=6.9e-14 Score=129.90 Aligned_cols=73 Identities=29% Similarity=0.324 Sum_probs=66.4
Q ss_pred CCCCChhHHHHHHHHHcCCCCCcEEEeecCCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960 82 QDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT 154 (348)
Q Consensus 82 ~~~~npKs~LQE~cQk~~~~~P~Y~~v~epgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~ 154 (348)
....|||+.||||||++++..|.|+++.+.|..+.|+|.|.|+|..++.|.|+|||+|||.||+.||..|...
T Consensus 19 ~~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~ 91 (232)
T 2yt4_A 19 PNGKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD 91 (232)
T ss_dssp CTTSCHHHHHHHHHHHTTCCCCEEEEEECSCTTSCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHSTT
T ss_pred CCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3568999999999999999999999988744339999999999999999999999999999999999999764
No 37
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.49 E-value=7.4e-14 Score=108.55 Aligned_cols=66 Identities=23% Similarity=0.158 Sum_probs=55.8
Q ss_pred CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhC
Q 018960 84 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS 155 (348)
Q Consensus 84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s 155 (348)
..||++.|+|+ . ..|.|+++.+ ++|++.|+|.|.|+|..+ .|.|+|||+|||.||+.||+.|..+.
T Consensus 6 ~K~pl~~L~q~---~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~~ 73 (75)
T 3p1x_A 6 GKNPVMELNEK---R--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDT 73 (75)
T ss_dssp CCCHHHHHHHH---S--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHc---C--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHccC
Confidence 45566666655 3 5789999876 579999999999999988 89999999999999999999997654
No 38
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=99.49 E-value=7.7e-14 Score=114.86 Aligned_cols=71 Identities=44% Similarity=0.593 Sum_probs=65.1
Q ss_pred ChHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCC-CchHHHHHHHHHHHHHHHHhhh
Q 018960 1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTF-SHRKAAEQDVAKIALECISKKI 72 (348)
Q Consensus 1 myKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~G-sSKKeAKq~AAk~aL~~L~~~~ 72 (348)
.||+.||||||++++.+|.|.++.+|+.|++.|++.|.++|..|..| .| +|||.|++.||+.||..|....
T Consensus 18 d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G-~G~~SKK~Aeq~AA~~AL~~L~~~~ 89 (103)
T 2l2n_A 18 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSL-PGFFNRKAAEQSAAEVALRELAKSS 89 (103)
T ss_dssp -CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECC-SCBSSHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEe-ecCCCHHHHHHHHHHHHHHHHhccc
Confidence 48999999999999999999999899999999999999999888775 89 8999999999999999987643
No 39
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.48 E-value=6e-14 Score=112.49 Aligned_cols=69 Identities=22% Similarity=0.267 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960 1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK 71 (348)
Q Consensus 1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~ 71 (348)
.||+.||||||+.++.+|.|.++. +|+.|.+.|++.|.++|. +.. |.|+|||+|++.||+.||..|...
T Consensus 16 d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~-G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 16 HEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEI-GSGTSKKLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp CHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEE-EEESSHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEE-EeeCCHHHHHHHHHHHHHHHHHcc
Confidence 389999999999999999999976 899999999999999996 665 589999999999999999988653
No 40
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.47 E-value=9e-14 Score=111.62 Aligned_cols=68 Identities=24% Similarity=0.274 Sum_probs=62.2
Q ss_pred ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960 1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 70 (348)
Q Consensus 1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~ 70 (348)
.||+.||||||++++.+|.|.++. .|+.|.+.|++.|.++|. +.. |.|.|||+|++.||+.||..|..
T Consensus 17 d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~-G~G~SKK~Aeq~AA~~AL~~L~~ 85 (89)
T 2cpn_A 17 NPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEI-GSGTSKKLAKRNAAAKMLLRVSG 85 (89)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEE-EEESSHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEE-eeeCCHHHHHHHHHHHHHHHHHh
Confidence 389999999999999999999876 899999999999999997 665 48999999999999999998864
No 41
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.46 E-value=1.3e-13 Score=110.69 Aligned_cols=68 Identities=21% Similarity=0.187 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960 1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 70 (348)
Q Consensus 1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~ 70 (348)
.||+.||||||++++.+|.|.++. .|+.|++.|++.|.++|. |.. |.|+|||+|++.||+.||..|..
T Consensus 7 d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~-G~G~SKK~Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 7 GPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VAT-GTGPNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp CHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEE-EEESSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEE-EeeCCHHHHHHHHHHHHHHHHhc
Confidence 489999999999999999999876 799999999999999995 655 58999999999999999998864
No 42
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=99.44 E-value=8.7e-14 Score=110.83 Aligned_cols=67 Identities=24% Similarity=0.249 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHc-----CCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHH
Q 018960 2 HKNRLQEHAQRS-----GIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECIS 69 (348)
Q Consensus 2 yKS~LqE~~QK~-----g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~ 69 (348)
||+.||||||++ ++.+|.|.++. +||+|++.|++.|.++|..|.. |.|+|||+|++.||+.||..|.
T Consensus 3 ~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~-G~G~SKK~AEq~AA~~AL~~L~ 75 (85)
T 2khx_A 3 PKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGC-GKGPSIQQAEMGAAMDALEKYN 75 (85)
T ss_dssp SCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCC-EEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEE-EeeCCHHHHHHHHHHHHHHHHh
Confidence 899999999984 56789999976 8999999999999999987766 5899999999999999997653
No 43
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=99.44 E-value=7.3e-14 Score=108.37 Aligned_cols=66 Identities=17% Similarity=0.200 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 70 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~ 70 (348)
||+.||||||+.++. |.|.++. +|+.|.+.|++.|.++| .+.. |.|+|||+|++.||+.||..|..
T Consensus 9 ~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~-G~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 9 PISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTE-GEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp HHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEE-ECCCSTTSSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEE-EeeCCHHHHHHHHHHHHHHHHhh
Confidence 899999999999998 9999976 79999999999999999 7765 48999999999999999988753
No 44
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.43 E-value=2.8e-13 Score=107.41 Aligned_cols=68 Identities=21% Similarity=0.316 Sum_probs=61.3
Q ss_pred ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960 1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK 71 (348)
Q Consensus 1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~ 71 (348)
.||+.||||||+++ .+|.|.++. .|+.|++.|++.|.++| .+.. |.|.|||+|++.||+.||..|...
T Consensus 9 d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~-G~G~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T 2dix_A 9 TPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCT-GEGTSKKLAKHRAAEAAINILKAN 77 (84)
T ss_dssp CHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEE-ECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEE-eeeCCHHHHHHHHHHHHHHHHhcc
Confidence 38999999999998 689999876 79999999999999999 7765 489999999999999999998653
No 45
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=99.41 E-value=3.2e-13 Score=104.04 Aligned_cols=66 Identities=29% Similarity=0.339 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960 1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 70 (348)
Q Consensus 1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~ 70 (348)
.||+.||||||+ +.+|.|.+++ +|+.|++.|++.|.++|..| . |.|+|||+|++.||+.||..|..
T Consensus 5 d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~-G~G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 5 LPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-E-GSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-E-EEESSHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-E-eecCCHHHHHHHHHHHHHHHHhc
Confidence 489999999997 4599999876 79999999999999999887 4 58999999999999999998864
No 46
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.41 E-value=5e-15 Score=144.83 Aligned_cols=144 Identities=14% Similarity=0.051 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCCCCceEEeccCCCC--CCceEEEEEEC------ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhc
Q 018960 3 KNRLQEHAQRSGIPLPVYQSHNEGFQH--APKFRASVSVD------GVTYTSPNTFSHRKAAEQDVAKIALECISKKIKD 74 (348)
Q Consensus 3 KS~LqE~~QK~g~~LP~Y~lv~~Gp~H--~~~Ft~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~ 74 (348)
...|.+++.++| |..|.+.+.|+.. .+....++..| |++|.|+| +.....|+++..+.+...+......
T Consensus 170 ~~~La~iA~~lg--L~~~l~~~~g~~~~~~~~~~~~ilaD~fEAlIGAIylD~~-~~G~~~a~~fi~~l~~~~l~~~~~~ 246 (341)
T 3rv0_A 170 NNNLFDWSTKLN--FTKRLQGNIATPTRVVKDKMSKRYADCVEAYIGALVIDRF-GTEFLDIKEWLEELSEKKLAKSSQM 246 (341)
T ss_dssp HHHHHHHHHHTT--TTTTTCCSSCCC----CCHHHHHHHHHHHHHHHHHHHHHC-SSTTHHHHHHHHHHTHHHHHCGGGC
T ss_pred HHHHHHHHHHcC--cHHHhhhcCChhhhccCCccccHHHHHHHHHHHHHhhcCc-cCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 467999999999 7788875433221 11122344555 89999872 1226788888776644444332210
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHcCCCC-CcEEEeecCCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960 75 EGCPLINQDTVFCKSILNEFAVKMNLEL-PAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV 153 (348)
Q Consensus 75 e~~~~~~~~~~npKs~LQE~cQk~~~~~-P~Y~~v~epgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~ 153 (348)
. .......|||+.||||||++++.. |.|+++.+.| .|++.|.|+|+.++.|.|+|||+|||.||+.||+.|..
T Consensus 247 ~---~~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~G---pF~v~v~i~~~~~g~G~G~SKK~AEq~AA~~AL~~L~~ 320 (341)
T 3rv0_A 247 V---IKEPLNKNAKNELAELLQINKLGHKLHYRKLTEMP---PFRVEVKIGDILLDEAEGNSIREAEHRAAMKVLENDEL 320 (341)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred h---hccccccCHHHHHHHHHHHcCCCCCceEEEEeccC---CEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHhhh
Confidence 0 001235799999999999998765 5999887633 29999999999999999999999999999999999875
Q ss_pred hC
Q 018960 154 TS 155 (348)
Q Consensus 154 ~s 155 (348)
..
T Consensus 321 ~~ 322 (341)
T 3rv0_A 321 LR 322 (341)
T ss_dssp --
T ss_pred hh
Confidence 53
No 47
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.39 E-value=3.7e-13 Score=109.70 Aligned_cols=68 Identities=19% Similarity=0.341 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK 71 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~ 71 (348)
||+.||||||++++. |.|.++. .|+.|.+.|++.|.++|..|.. |.|+|||+|++.||+.||..|...
T Consensus 16 ~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~-G~G~SKK~Aeq~AA~~AL~~L~~~ 84 (97)
T 1x49_A 16 YMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPE-AKGRSKQEARNAAAKLAVDILDNE 84 (97)
T ss_dssp HHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCC-EEESSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEE-EeeCCHHHHHHHHHHHHHHHHHhh
Confidence 899999999999986 7999875 7999999999999999988766 489999999999999999988654
No 48
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=99.37 E-value=5e-13 Score=109.34 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=62.5
Q ss_pred ChHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECc-eEEeCCCCCCchHHHHHHHHHHHHHHHHhhh
Q 018960 1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDG-VTYTSPNTFSHRKAAEQDVAKIALECISKKI 72 (348)
Q Consensus 1 myKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDG-aiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~ 72 (348)
.||+.||||||++ +.+|.|.+...|+.|++.|++.|.++| ..+.. |.|.|||+|++.||+.||..|....
T Consensus 7 d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~-G~G~SKK~Aeq~AA~~AL~~L~~~~ 77 (99)
T 1whq_A 7 GIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGM-GNSTNKKDAQSNAARDFVNYLVRIN 77 (99)
T ss_dssp SSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEE-EEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEE-eccCCHHHHHHHHHHHHHHHHHhhC
Confidence 3899999999999 789999996689999999999999999 56665 4899999999999999999987643
No 49
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.36 E-value=1.2e-12 Score=104.86 Aligned_cols=68 Identities=19% Similarity=0.215 Sum_probs=61.6
Q ss_pred ChHHHHHHHHHHcCCCCCceEEeccCCCCCC-ceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960 1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAP-KFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK 71 (348)
Q Consensus 1 myKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~-~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~ 71 (348)
.||+.||||||++++.+ .|. ...|+.|++ +|++.|.++|..|..| .|.|||+|++.||+.||..|...
T Consensus 7 d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~ 75 (88)
T 1x48_A 7 GYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTG-SGVTKQEAKQLAAKEAYQKLLKS 75 (88)
T ss_dssp CHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEE-EESSHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEe-ecCCHHHHHHHHHHHHHHHHHhc
Confidence 38999999999999876 999 668999999 7999999999888764 89999999999999999999764
No 50
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=105.17 Aligned_cols=68 Identities=31% Similarity=0.405 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960 1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK 71 (348)
Q Consensus 1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~ 71 (348)
.||+.||||||+.+. .|.|.++. +|+.|++.|++.|.++|. +.. |.|+|||+|++.||+.||..|...
T Consensus 15 d~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~-G~G~SKK~Aeq~AA~~aL~~L~~~ 83 (90)
T 3llh_A 15 TPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCT-GQGPSKKAAKHKAAEVALKHLKGG 83 (90)
T ss_dssp CHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEE-EEESSHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEE-EEeCCHHHHHHHHHHHHHHHHHhc
Confidence 389999999999985 89999865 899999999999999997 444 589999999999999999988654
No 51
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=99.34 E-value=2.9e-12 Score=107.17 Aligned_cols=69 Identities=22% Similarity=0.210 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEE-----CceEEeCCCCCCchHHHHHHHHHHHHHHHHhhh
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSV-----DGVTYTSPNTFSHRKAAEQDVAKIALECISKKI 72 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~v-----DGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~ 72 (348)
||+.||||||++++ +|.|.+...||.|++.|++.|.+ +|..|.. |.|+|||+|++.||+.||..|....
T Consensus 28 ~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~-G~G~SKK~AEq~AA~~AL~~L~~~~ 101 (113)
T 1uil_A 28 AKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAR-EHGSNKKLAAQSCALSLVRQLYHLG 101 (113)
T ss_dssp HHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEE-CCCSSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEE-EeeCCHHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999 99999656899999999999999 5777765 4899999999999999999987653
No 52
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.33 E-value=1.6e-12 Score=105.74 Aligned_cols=66 Identities=33% Similarity=0.361 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960 1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 70 (348)
Q Consensus 1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~ 70 (348)
.||+.||||||++ .+|.|.++. .|+.|++.|++.|.++|..| . |.|.|||+|++.||+.||..|..
T Consensus 17 d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~-G~G~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 17 DLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-E-ASGPSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp SCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-E-EeeCCHHHHHHHHHHHHHHHhCC
Confidence 3899999999997 489999987 79999999999999999887 4 58999999999999999998853
No 53
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.32 E-value=3.4e-12 Score=104.14 Aligned_cols=67 Identities=37% Similarity=0.401 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK 71 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~ 71 (348)
||+.||||||++++.+|.|.++. .|+. +.|++.|.++|..|..| .|.|||+|++.||+.||..|...
T Consensus 18 ~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~ 85 (98)
T 1x47_A 18 EVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSG-TASSKKLAKNKAARATLEILIPD 85 (98)
T ss_dssp HHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999987 7887 99999999999888764 89999999999999999988654
No 54
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=99.31 E-value=1.5e-12 Score=105.23 Aligned_cols=66 Identities=27% Similarity=0.277 Sum_probs=60.0
Q ss_pred ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960 1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 70 (348)
Q Consensus 1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~ 70 (348)
++|+.|+||||+.+ .|.|.+++ +|++|++.|++.|.++|..| . |.|+|||+||+.||+.||..|..
T Consensus 15 ~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~-G~G~SKK~AEq~AA~~AL~~L~~ 81 (91)
T 2l33_A 15 HGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-Q-GAGSNKKVAKAYAALAALEKLFP 81 (91)
T ss_dssp STTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-E-eeeCCHHHHHHHHHHHHHHHHhh
Confidence 47899999999998 88999876 79999999999999999887 3 58999999999999999998864
No 55
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=99.31 E-value=1.4e-12 Score=106.10 Aligned_cols=67 Identities=15% Similarity=-0.017 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECce-EEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGV-TYTSPNTFSHRKAAEQDVAKIALECISK 70 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGa-iY~dgG~GsSKKeAKq~AAk~aL~~L~~ 70 (348)
||+.||||+|+.+ .+|.|.++.+||+|++.|++.|.++|. .++. |.|+|||+|+|.||+.||..|.-
T Consensus 8 ~KT~LQE~~Q~~~-~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~-G~G~SKK~AEQ~AA~~AL~~l~~ 75 (94)
T 1t4n_A 8 AKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGT-GVGRNIKIAGIRAAENALRDKKM 75 (94)
T ss_dssp HHHHHHHHTCSSS-SCCEEEECCCCSSSCCSEEEEEECSSSCEEEE-EEESSHHHHHHHHHHHHHHCHHH
T ss_pred chHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEE-EEeCCHHHHHHHHHHHHHHHHHH
Confidence 7999999999975 589999998999999999999999998 7766 48999999999999999986643
No 56
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.30 E-value=5.4e-12 Score=107.86 Aligned_cols=67 Identities=28% Similarity=0.372 Sum_probs=61.8
Q ss_pred ChHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCC-CchHHHHHHHHHHHHHHHHh
Q 018960 1 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTF-SHRKAAEQDVAKIALECISK 70 (348)
Q Consensus 1 myKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~G-sSKKeAKq~AAk~aL~~L~~ 70 (348)
.||+.||||||++++.+|.|.++.. .|++.|++.|.++|..|..| .| .|||+|++.||+.||..|..
T Consensus 27 d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G-~G~~SKK~AEQ~AA~~AL~~L~~ 94 (128)
T 1whn_A 27 TPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQST-LWDKSKKLAEQTAAIVCLRSQGL 94 (128)
T ss_dssp CHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEES-SCBSSHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEE-eccCCHHHHHHHHHHHHHHHHhc
Confidence 3899999999999999999999987 89999999999999888764 89 99999999999999999854
No 57
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=99.24 E-value=4.4e-12 Score=106.87 Aligned_cols=68 Identities=15% Similarity=-0.027 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECce-EEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGV-TYTSPNTFSHRKAAEQDVAKIALECISKK 71 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGa-iY~dgG~GsSKKeAKq~AAk~aL~~L~~~ 71 (348)
||+.||||+|+.+ .+|.|.++.+||+|++.|++.|.++|. .++. |.|.|||+|+|.||+.||..+.-.
T Consensus 10 ~KT~LQE~~Q~~~-~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~-G~G~SKK~AEQ~AA~~AL~~l~~l 78 (117)
T 1t4o_A 10 AKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGT-GVGRNIKIAGIRAAENALRDKKML 78 (117)
T ss_dssp HHHHHHHHHCCGG-GCCEEEEEECCCSSCCCEEEEEECTTCCEEEE-EEESSHHHHHHHHHHHHHHCHHHH
T ss_pred chHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEE-EEeCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999955 689999988999999999999999998 7766 489999999999999999876543
No 58
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=99.21 E-value=1e-11 Score=104.20 Aligned_cols=64 Identities=30% Similarity=0.341 Sum_probs=57.6
Q ss_pred ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960 1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK 71 (348)
Q Consensus 1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~ 71 (348)
.||+.||||||+ |.|.+++ +|+.|++.|++.|.++|..| . |.|.|||+||+.||+.||..|...
T Consensus 38 d~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~-G~G~SKK~AEq~AA~~AL~~L~~~ 102 (114)
T 2ljh_A 38 NTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-L-GQGRSKKVARIEAAATALRSFIQF 102 (114)
T ss_dssp CHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHCCC
T ss_pred CHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-E-eeeCCHHHHHHHHHHHHHHHHHcC
Confidence 389999999984 7999876 79999999999999999988 4 689999999999999999988653
No 59
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=99.18 E-value=4.6e-11 Score=91.35 Aligned_cols=63 Identities=29% Similarity=0.273 Sum_probs=56.0
Q ss_pred ChHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960 1 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 70 (348)
Q Consensus 1 myKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~ 70 (348)
.|++.|+||| .+|.|.+++ .|+.|++.|++.|.++|..| . |.|+|||+|++.||+.||..|..
T Consensus 5 np~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~-G~G~SKK~Aeq~AA~~al~~L~~ 68 (71)
T 2b7v_A 5 NPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-E-GSGRNKKLAKARAAQSALATVFN 68 (71)
T ss_dssp CHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-E-EEESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-E-EeeCCHHHHHHHHHHHHHHHHHh
Confidence 3789999993 489999876 79999999999999999876 3 68999999999999999998865
No 60
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=99.17 E-value=5.6e-11 Score=110.46 Aligned_cols=68 Identities=25% Similarity=0.293 Sum_probs=60.2
Q ss_pred CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960 84 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT 154 (348)
Q Consensus 84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e--pgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~ 154 (348)
..|+|+.|++|++. +..|.|+++.+ ++|.+.|+|+|.|+|..+ .|.|+|||+|||.||+.||+.|...
T Consensus 3 ~~~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~l~~~ 72 (236)
T 2l3j_A 3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQF 72 (236)
T ss_dssp CCCTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-EEEESHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEE-EEecCChHHHHHHHHHHHHHHHHhc
Confidence 35889999999976 56789999875 579999999999999886 8999999999999999999999754
No 61
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=99.15 E-value=1.1e-11 Score=115.95 Aligned_cols=98 Identities=18% Similarity=0.089 Sum_probs=67.2
Q ss_pred ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCChhHHHHHHHHHcCCCCCcEEEeecCCCCCcEEEE
Q 018960 41 GVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSS 120 (348)
Q Consensus 41 GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~~e~~~~~~~~~~npKs~LQE~cQk~~~~~P~Y~~v~epgH~~~F~v~ 120 (348)
|++|.|+| .+...++++....+...+..... .+||+.||||+|.... .+.|.... ..|.+.|+|.
T Consensus 166 GAiylD~G--~~~~~~~~~i~~~~~~~i~~~~~-----------~~~k~~l~el~~~~~~-~~~~~~~~-~~~~~~f~v~ 230 (265)
T 3c4b_A 166 GAIYMDSG--MSLEVVWQVYYPMMQPLIEKFSA-----------NVPRSPVRELLEMEPE-TAKFSPAE-RTYDGKVRVT 230 (265)
T ss_dssp HHHHHHTT--SCHHHHHHHHHHHHHHHHHHHHH-----------HSCCCHHHHHHHHCTT-TEEECCCE-ECTTSCEEEE
T ss_pred hheeeecC--CCHHHHHHHHHHHHHHHHHhHhh-----------cCCCCHHHHHHHhccC-Cceeeecc-ccCCCcEEEE
Confidence 89999976 34577777765554333322110 2344555555554432 22332211 3689999999
Q ss_pred EEECCEEeeeeecCCHHHHHHHHHHHHHHHHHh
Q 018960 121 LVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV 153 (348)
Q Consensus 121 V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~ 153 (348)
|.|+|..++.|.|+|||+|||.||+.||+.|..
T Consensus 231 v~v~~~~~~~G~G~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 231 VEVVGKGKFKGVGRSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp EEETTTEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EEEecceEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 999998899999999999999999999999864
No 62
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=99.09 E-value=1e-10 Score=90.78 Aligned_cols=65 Identities=28% Similarity=0.297 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960 3 KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK 71 (348)
Q Consensus 3 KS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~ 71 (348)
|+-|++|+|... .|.|.++. +|+.|++.|++.|.+||..| . |.|+|||+|++.||+.||..|...
T Consensus 7 K~pl~~L~q~~~--~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~-G~G~SKK~Aeq~AA~~al~~L~~~ 72 (75)
T 3p1x_A 7 KNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-Q-GAGSNKKVAKAYAALAALEKLFPD 72 (75)
T ss_dssp CCHHHHHHHHST--TCCEEEEEEESCTTSCEEEEEEEETTEEE-E-EEESSHHHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHcCC--CCEEEEEEeeCCCCCceEEEEEEECCEEE-E-EEECCHHHHHHHHHHHHHHHHHcc
Confidence 345778888764 88999987 89999999999999999888 4 589999999999999999988653
No 63
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.01 E-value=3e-10 Score=103.81 Aligned_cols=66 Identities=27% Similarity=0.262 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHH
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECIS 69 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~ 69 (348)
||+.||||||+.++.+|.|.++. .|+.|.+.|++.|.++|. +.. |.|.|||+||+.||+.||..|.
T Consensus 152 pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~-G~G~skK~Ae~~AA~~AL~~L~ 218 (221)
T 2nug_A 152 YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTL-GEGKSKKEAEQRAAEELIKLLE 218 (221)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEE-EEESSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEE-EecCCHHHHHHHHHHHHHHHhh
Confidence 79999999999998899999876 799999999999999998 766 4899999999999999998875
No 64
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.01 E-value=3.7e-10 Score=105.44 Aligned_cols=68 Identities=31% Similarity=0.284 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 70 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~ 70 (348)
||+.||||||+.++..|.|.++. .|+.|.+.|++.|.++|..+.. |.|.|||+||+.||+.||..|..
T Consensus 181 pkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~-G~G~SKK~Aeq~AA~~AL~~L~~ 249 (252)
T 1o0w_A 181 YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIAT-GKGRTKKEAEKEAARIAYEKLLK 249 (252)
T ss_dssp HHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEE-EEESSHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEE-EeeCCHHHHHHHHHHHHHHHHhh
Confidence 79999999999998899999876 7999999999999999988766 48999999999999999998754
No 65
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=98.86 E-value=2.4e-10 Score=105.74 Aligned_cols=70 Identities=30% Similarity=0.328 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhhh
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI 72 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~ 72 (348)
||+.||||||+.++..|.|.++..|+.|.+.|++.|.++|..+.. |.|.|||+||+.||+.||..|....
T Consensus 164 pkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~-G~G~skk~Ae~~AA~~AL~~L~~~~ 233 (242)
T 2a11_A 164 WKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGS-GVGRSKKEAEQKAAAAAWKALEVLD 233 (242)
T ss_dssp -----------------------------------------------------------------------
T ss_pred hHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEE-eeeCCHHHHHHHHHHHHHHHHhhcc
Confidence 799999999999988999999889999999999999999987765 4899999999999999999886543
No 66
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=98.85 E-value=2.9e-10 Score=106.29 Aligned_cols=68 Identities=31% Similarity=0.351 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHcCCCCCceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 70 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~ 70 (348)
||+.||||||+.++.+|.|.++. +|+.|.+.|++.|.++|..+.. |.|.|||+||+.||+.||..|..
T Consensus 179 pks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~-G~G~SKK~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 179 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELAR-AIAGSKKEAQQMAAKIALEKLGA 247 (248)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEE-eeeCCHHHHHHHHHHHHHHHHHc
Confidence 79999999999999999999875 7999999999999999987776 48999999999999999988753
No 67
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=98.15 E-value=2.8e-07 Score=90.12 Aligned_cols=64 Identities=22% Similarity=0.142 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHcCCCC-CceEEec-cCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHhh
Q 018960 2 HKNRLQEHAQRSGIPL-PVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK 71 (348)
Q Consensus 2 yKS~LqE~~QK~g~~L-P~Y~lv~-~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~ 71 (348)
||+.||||||+.++.+ |.|.++. .|+ |++.|.++|..++. |.|.|||+|++.||+.||..|...
T Consensus 256 ~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~-G~G~SKK~AEq~AA~~AL~~L~~~ 321 (341)
T 3rv0_A 256 AKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDE-AEGNSIREAEHRAAMKVLENDELL 321 (341)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEE-EEeCCHHHHHHHHHHHHHHHhhhh
Confidence 7899999999998765 4899876 343 99999999987766 589999999999999999887653
No 68
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=97.60 E-value=5e-05 Score=70.74 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEECceEEeCCCCCCchHHHHHHHHHHHHHHHHh
Q 018960 2 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK 70 (348)
Q Consensus 2 yKS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vDGaiY~dgG~GsSKKeAKq~AAk~aL~~L~~ 70 (348)
+++.|+||.+.... .+.|. ..|..|++.|++.|.++|..+.. |.|.|||+||+.||+.||..|..
T Consensus 199 ~k~~l~el~~~~~~-~~~~~--~~~~~~~~~f~v~v~v~~~~~~~-G~G~SkK~Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 199 PRSPVRELLEMEPE-TAKFS--PAERTYDGKVRVTVEVVGKGKFK-GVGRSYRIAKSAAARRALRSLKA 263 (265)
T ss_dssp CCCHHHHHHHHCTT-TEEEC--CCEECTTSCEEEEEEETTTEEEE-EEESSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhccC-Cceee--eccccCCCcEEEEEEEecceEEE-EeeCCHHHHHHHHHHHHHHHHhh
Confidence 45567777776642 22222 24567889999999999987766 48999999999999999998854
No 69
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=96.54 E-value=0.0059 Score=49.74 Aligned_cols=71 Identities=8% Similarity=0.075 Sum_probs=51.3
Q ss_pred CChhHHHHHHHHHcCC-----CCCcEEEeecCCCCCcEEEEEEECC----EEeeeeecCCHHHHHHHHHHHHHHHHHhhC
Q 018960 85 VFCKSILNEFAVKMNL-----ELPAYSTRQSEALLPVFVSSLVFNG----VTYTGEPGRSKKEAEQLAARAVIRTLLVTS 155 (348)
Q Consensus 85 ~npKs~LQE~cQk~~~-----~~P~Y~~v~epgH~~~F~v~V~I~g----~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s 155 (348)
.+.++.|+.||++.-. ..|.|.+.........| |+|.+-. +.+....-.||+.||+.||-+|...|....
T Consensus 4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~~~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~L~~~G 82 (102)
T 2kou_A 4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNLG 82 (102)
T ss_dssp SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCGGGCEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCccccCccceEEEeEeecCCCeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHHHHHCC
Confidence 4678999999998743 34889876543334567 8888643 122223459999999999999999998764
Q ss_pred C
Q 018960 156 G 156 (348)
Q Consensus 156 ~ 156 (348)
.
T Consensus 83 ~ 83 (102)
T 2kou_A 83 V 83 (102)
T ss_dssp S
T ss_pred C
Confidence 3
No 70
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=94.77 E-value=0.0018 Score=69.31 Aligned_cols=108 Identities=13% Similarity=0.070 Sum_probs=71.8
Q ss_pred HHHHHHHHHHcCCCCCceEEeccCCCCCCceEEEEEEC------ceEEeC-CCCCCchHHHHHHHHHHHHHHHHhhhhcC
Q 018960 3 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVD------GVTYTS-PNTFSHRKAAEQDVAKIALECISKKIKDE 75 (348)
Q Consensus 3 KS~LqE~~QK~g~~LP~Y~lv~~Gp~H~~~Ft~SV~vD------GaiY~d-gG~GsSKKeAKq~AAk~aL~~L~~~~~~e 75 (348)
...|.++++++| ++.|++.+.|+. -..++..| |++|.| +| ...|+++..+. +.......
T Consensus 375 n~~La~~A~~lg--L~~~l~~~~~e~----~~~~ilaD~~EAliGAiylD~~G----~~~a~~~v~~~----~~~~~~~~ 440 (756)
T 2qvw_A 375 NEALNYLVQTLG--LPQLAEFSNNLV----AKSKTWADMYEEIVGSIFTGPNG----IYGCEEFLAKT----LMSPEHSK 440 (756)
T ss_dssp HHHHHHHHHHTT--CTTTCBCCSCC------CCCCHHHHHHHHHHHHHHSTTH----HHHHHHHHHHH----HBCGGGSC
T ss_pred chHHHHHHHHcC--hHHHhccCCCCC----CcccHHHhHHHHHhCcccccccC----hHHHHHHHHHH----HHhhhhcc
Confidence 367999999999 889999887764 12344555 889998 76 56665554332 22222111
Q ss_pred CCCCCCCCCCCh-hHHHHHHHHHcCCCCCcEEEeecCCCCCcEEEEEEECCEEeeeeecCCHHHHH---------HHHHH
Q 018960 76 GCPLINQDTVFC-KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAE---------QLAAR 145 (348)
Q Consensus 76 ~~~~~~~~~~np-Ks~LQE~cQk~~~~~P~Y~~v~epgH~~~F~v~V~I~g~~~~~G~G~SKKeAK---------q~AA~ 145 (348)
. ......|| |+.||||+|+++ ++.|.+.+.+.|| -.||+
T Consensus 441 ~---~~~~~~Dp~Kt~LqE~~q~~~----------------------------ia~~v~~~~~~ak~~~~~~~~~~~aa~ 489 (756)
T 2qvw_A 441 T---VGSACPDAVTKASKRVCMGEA----------------------------GAHEFRSLVDYACEQGISVFCSSRVST 489 (756)
T ss_dssp C------CCCHHHHHHHHHHHTSCC----------------------------CHHHHHHHHHHTTTTTCCCBSSSHHHH
T ss_pred c---ccccccCchHHHHHHHHhccc----------------------------hhhhhhhhhhHHhhhccccchhhHHHH
Confidence 1 12335788 999999998433 3457777888887 57999
Q ss_pred HHHHHHHhhC
Q 018960 146 AVIRTLLVTS 155 (348)
Q Consensus 146 ~AL~~L~~~s 155 (348)
.||+.|....
T Consensus 490 ~aL~~l~~~~ 499 (756)
T 2qvw_A 490 MFLERLRDIP 499 (756)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHhhcccc
Confidence 9999998764
No 71
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.87 E-value=1.1 Score=37.36 Aligned_cols=72 Identities=15% Similarity=-0.087 Sum_probs=46.6
Q ss_pred CCCChhHHHHHHHHHcCCCC--CcEEEeecCCCCCcEEEEEEEC--CEEeeeeecCCHHHHHHHHHHHHHHHHHhh
Q 018960 83 DTVFCKSILNEFAVKMNLEL--PAYSTRQSEALLPVFVSSLVFN--GVTYTGEPGRSKKEAEQLAARAVIRTLLVT 154 (348)
Q Consensus 83 ~~~npKs~LQE~cQk~~~~~--P~Y~~v~epgH~~~F~v~V~I~--g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~ 154 (348)
....||++|+...|+--... =.|.+.....+.++=.|++.+. ...-..|.|+.|.+||++||..|++.|+..
T Consensus 15 ~Fp~PKnLL~~ViqrA~~ss~~kd~l~~~~t~g~k~K~~tl~l~WP~~mef~a~G~rK~eAE~kAAA~AC~kLK~L 90 (119)
T 2db2_A 15 EFPQPKNLLNSVIGRALGISHAKDKLVYVHTNGPKKKKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKGW 90 (119)
T ss_dssp TCSCHHHHHHHHHHHHTTHHHHHHHEEEEECCSSSSEEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHccCchhhheeEEeecCCceeEEEEEecCCCcEEEEeeccchHHHHHHHHHHHHHHHHHc
Confidence 35689999998877653211 1232222222334445666553 333335999999999999999999999864
No 72
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=88.43 E-value=0.37 Score=52.55 Aligned_cols=68 Identities=21% Similarity=0.280 Sum_probs=49.2
Q ss_pred CCChhHHHHHHHHHcCCCCCcEEEeec--------CC-----CCC-cEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHH
Q 018960 84 TVFCKSILNEFAVKMNLELPAYSTRQS--------EA-----LLP-VFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIR 149 (348)
Q Consensus 84 ~~npKs~LQE~cQk~~~~~P~Y~~v~e--------pg-----H~~-~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~ 149 (348)
...||.++++ +.+-. +.|++.+. || ..| .|.|.+.+-+-.+..+..+.||+|||.||+.||+
T Consensus 16 ~~~pk~~~~q---~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al~ 91 (950)
T 3htx_A 16 TPTPKAIIHQ---KFGAK-ASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALD 91 (950)
T ss_dssp CCCCHHHHHH---TTGGG-SEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHH---HhCcc-eeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchhhccccHHHHHHHHHHH
Confidence 4468888764 33333 48976432 12 122 7888888877655579999999999999999999
Q ss_pred HHHhhC
Q 018960 150 TLLVTS 155 (348)
Q Consensus 150 ~L~~~s 155 (348)
.|..+.
T Consensus 92 ~~g~~~ 97 (950)
T 3htx_A 92 KLGIRP 97 (950)
T ss_dssp TTTSTT
T ss_pred HhCCCc
Confidence 998753
No 73
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=72.94 E-value=4.5 Score=32.53 Aligned_cols=66 Identities=14% Similarity=0.135 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCC-----CCCceEEeccCCCCCCceEEEEEECc-----eEEeCCCCCCchHHHHHHHHHHHHHHHHhhh
Q 018960 3 KNRLQEHAQRSGI-----PLPVYQSHNEGFQHAPKFRASVSVDG-----VTYTSPNTFSHRKAAEQDVAKIALECISKKI 72 (348)
Q Consensus 3 KS~LqE~~QK~g~-----~LP~Y~lv~~Gp~H~~~Ft~SV~vDG-----aiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~ 72 (348)
++.|+.||+++.. ..|.|.+.... ..+..| ++|.+-. .+++. .-.+++.||+.||-.|...|.+..
T Consensus 7 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~-~~~~~~-c~v~LP~~splr~i~g~--~~~sk~~AK~sAAf~Ac~~L~~~G 82 (102)
T 2kou_A 7 ISMMYKYCSRLPHDEFFQPKPEFQFKPVD-EFGGTI-CRITLPANAPISEIESS--LLPSTEAAKKDACLKAVHELHNLG 82 (102)
T ss_dssp HHHHHHHHTTSSSCTTCCSSCEEEEEECC-GGGCEE-EEEECCTTCSSCCEEEE--EESSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCccccCccceEEEeEee-cCCCeE-EEEECCCCCCCCeeeCC--ccccHHHHHHHHHHHHHHHHHHCC
Confidence 5789999999853 35778864321 113466 8887652 22222 236899999999999999998865
No 74
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=46.92 E-value=8.1 Score=30.50 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=27.1
Q ss_pred ccccccchhhhhhhhhhhccccccccCCccccccCCCC
Q 018960 304 SEGGSSSTNKRRKNKRKANKKLRTDAQPCVSAQPLTQV 341 (348)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (348)
-..|-|-|+|||+..|.+-+. ..|-|.+++-+||.|.
T Consensus 41 KGLGIsYgRkkRr~RRr~p~~-~~~hq~~~~kqp~sq~ 77 (86)
T 1tac_A 41 KGLGISYGRKKRRQRRRPSQG-GQTHQDPIPKQPSSQP 77 (86)
T ss_dssp TTSSSSSCCCSGGGSCTTCCS-SCCCSSSSTTCCSSTT
T ss_pred CCCceEeccccccccCCCCCC-CCCCcCcCCCCCCCCC
Confidence 346777888887766655443 4577999999999875
No 75
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=40.35 E-value=22 Score=38.93 Aligned_cols=70 Identities=16% Similarity=0.059 Sum_probs=46.4
Q ss_pred CChhHHHHHHHHHcCCCCCcEEEeecC----------------------------------CCCCcEEEEEEECCE----
Q 018960 85 VFCKSILNEFAVKMNLELPAYSTRQSE----------------------------------ALLPVFVSSLVFNGV---- 126 (348)
Q Consensus 85 ~npKs~LQE~cQk~~~~~P~Y~~v~ep----------------------------------gH~~~F~v~V~I~g~---- 126 (348)
..|+.+|..+|.++.+.-|.|.+...+ +-...|.|+|.|..+
T Consensus 394 ~~pr~~l~~fc~~~~l~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~c~~~~~~~~~~~ 473 (950)
T 3htx_A 394 PLPREILGLFCHQHRLAEPILSSSTAPVKSLSDIFRSHKKLKVSGVDDANENLSRQKEDTPGLGHGFRCEVKIFTKSQDL 473 (950)
T ss_dssp SCHHHHHHHHHHTTTCCCCEEECCC--------------------------------------------CEEEEEETTEE
T ss_pred CChHHHHHHHHHHhhcCcceeeeccCccccccccccccccccccccchhhhcCCcccCCCCCcccceEEEEEEEecccch
Confidence 468899999999999999988733211 001129999988422
Q ss_pred --Eee-eeecCCHHHHHHHHHHHHHHHHHhh
Q 018960 127 --TYT-GEPGRSKKEAEQLAARAVIRTLLVT 154 (348)
Q Consensus 127 --~~~-~G~G~SKKeAKq~AA~~AL~~L~~~ 154 (348)
.+. .+.=+..-+|=|+|+.++|..|..-
T Consensus 474 ~~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~ 504 (950)
T 3htx_A 474 VLECSPRKFYEKENDAIQNASLKALLWFSKF 504 (950)
T ss_dssp EEEECCSCCCSSHHHHHHHHHHHHHHHHHTS
T ss_pred hhccChhhhhhhccHHHHHHHHHHHHHHHHH
Confidence 122 2455788899999999999999764
No 76
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=37.23 E-value=7.7 Score=30.61 Aligned_cols=35 Identities=31% Similarity=0.456 Sum_probs=4.9
Q ss_pred ccccchhhhhhhhhhhccccccccCCccccccCCCC
Q 018960 306 GGSSSTNKRRKNKRKANKKLRTDAQPCVSAQPLTQV 341 (348)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (348)
.|-|-|+|+|+..|.+-+. ..|-|.+++-+||.|.
T Consensus 43 LGIsYgRkkRrqRRr~p~~-s~~hq~~~~kQp~sq~ 77 (86)
T 3mi9_C 43 LGISYGRKKRRQRRRAHQN-SQTHQASLSKQPTSQS 77 (86)
T ss_dssp SCCCSCC-----------------------------
T ss_pred CccccccccccccCCCCCC-CCCCcCcCCcCCCCCC
Confidence 4667777776555555443 3488999999999874
No 77
>3k6q_A Putative ligand binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Syntrophomonas wolfei subsp}
Probab=32.93 E-value=95 Score=26.46 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHcCCCCCcEEEeecCCCCCcEEEEEEECCEEeeeeecCCHHHHHHHHHHHHHHHHHhhC
Q 018960 87 CKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS 155 (348)
Q Consensus 87 pKs~LQE~cQk~~~~~P~Y~~v~epgH~~~F~v~V~I~g~~~~~G~G~SKKeAKq~AA~~AL~~L~~~s 155 (348)
-...|.++|+ .+.. .++++.+.| ++++.+.+-.+. +.|.|+.+|.+..+..++++-+.-.
T Consensus 40 s~~lL~~~L~--~y~f-~~e~i~EdG-----s~t~~l~eldi~-~~g~T~eeA~~~li~~l~eYAedY~ 99 (139)
T 3k6q_A 40 SEQIIKDLLQ--DLKI-HAELSKEDG-----IIIGTIDGFDLV-VSGESEQEVIQKLAEDLLEYAQDYM 99 (139)
T ss_dssp EHHHHHHHTT--TCCE-EEEEEEETT-----EEEEEETTTCCE-EEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHh--cccC-ceEEEecCC-----eEEEEecCceeE-eeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4668889983 3333 556665533 477777875543 8999999999999999888766543
No 78
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=27.38 E-value=1.4 Score=38.46 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCCCCceEEeccCCCCC-CceEEEEEEC------ceEEeCCCCCCchHHHHHHHHHH
Q 018960 3 KNRLQEHAQRSGIPLPVYQSHNEGFQHA-PKFRASVSVD------GVTYTSPNTFSHRKAAEQDVAKI 63 (348)
Q Consensus 3 KS~LqE~~QK~g~~LP~Y~lv~~Gp~H~-~~Ft~SV~vD------GaiY~dgG~GsSKKeAKq~AAk~ 63 (348)
...|.+++.++| +..|+..+.|+... .+...++..| |++|.++| .+.|+++..+.
T Consensus 101 ~~~La~ia~~lg--L~~~l~~~~~~~~~~~~~~~~ilad~fEAliGAiylD~G----~~~a~~~i~~~ 162 (170)
T 3o2r_A 101 EKSFAKIANSLN--LGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAG----FEFAKTIALRL 162 (170)
T ss_dssp HHHHHHHHHHTT--GGGTCBCCHHHHHTTGGGCHHHHHHHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--cHHhhhcCcchhhcCCCCcchHHHHHHHHHHHHHHHHCC----HHHHHHHHHHH
Confidence 468999999998 88888877554321 2233445555 88999887 57777766554
No 79
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.98 E-value=1.3e+02 Score=24.92 Aligned_cols=67 Identities=18% Similarity=-0.003 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHcCC--CCCceEEec--cCCCCCCceEEEEEEC---ceEEeCCCCCCchHHHHHHHHHHHHHHHHhhhh
Q 018960 2 HKNRLQEHAQRSGI--PLPVYQSHN--EGFQHAPKFRASVSVD---GVTYTSPNTFSHRKAAEQDVAKIALECISKKIK 73 (348)
Q Consensus 2 yKS~LqE~~QK~g~--~LP~Y~lv~--~Gp~H~~~Ft~SV~vD---GaiY~dgG~GsSKKeAKq~AAk~aL~~L~~~~~ 73 (348)
+|+.|+...|..-. ..-.|++.- +|. ..-.+++.+. -+.|. +.|+.|-+|++.||..|...|.....
T Consensus 19 PKnLL~~ViqrA~~ss~~kd~l~~~~t~g~---k~K~~tl~l~WP~~mef~--a~G~rK~eAE~kAAA~AC~kLK~Lgl 92 (119)
T 2db2_A 19 PKNLLNSVIGRALGISHAKDKLVYVHTNGP---KKKKVTLHIKWPKSVEVE--GYGSKKIDAERQAAAAACQLFKGWGL 92 (119)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHEEEEECCSS---SSEEEEEEECSSSCEEEE--EEESSHHHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHccCchhhheeEEeecCC---ceeEEEEEecCCCcEEEE--eeccchHHHHHHHHHHHHHHHHHcCc
Confidence 57777777666421 122332221 232 2235666665 45554 47788999999999999999988653
Done!