Query 018961
Match_columns 348
No_of_seqs 250 out of 880
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 08:44:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.7 6E-19 2.1E-23 132.4 4.0 56 197-254 4-59 (60)
2 2d8s_A Cellular modulator of i 99.7 8.7E-18 3E-22 132.5 3.9 61 194-254 10-70 (80)
3 2kiz_A E3 ubiquitin-protein li 98.5 1.3E-07 4.5E-12 69.9 4.4 55 193-254 8-63 (69)
4 1x4j_A Ring finger protein 38; 98.4 1.5E-07 5.2E-12 70.9 2.8 52 195-253 19-71 (75)
5 2ep4_A Ring finger protein 24; 98.3 4.1E-07 1.4E-11 68.1 4.2 52 197-255 13-65 (74)
6 2l0b_A E3 ubiquitin-protein li 98.3 3.1E-07 1.1E-11 72.3 2.9 51 196-253 37-88 (91)
7 2ect_A Ring finger protein 126 98.2 3.1E-07 1E-11 69.4 1.2 55 193-254 9-64 (78)
8 2ecm_A Ring finger and CHY zin 98.2 5.7E-07 1.9E-11 63.4 2.4 50 197-253 3-54 (55)
9 2ct2_A Tripartite motif protei 98.2 1.5E-06 5E-11 66.5 4.9 56 194-254 10-68 (88)
10 1iym_A EL5; ring-H2 finger, ub 98.2 3.1E-07 1.1E-11 64.9 0.9 50 197-253 3-54 (55)
11 1v87_A Deltex protein 2; ring- 98.1 1.2E-06 4.2E-11 70.6 3.9 52 199-255 25-95 (114)
12 2ecl_A Ring-box protein 2; RNF 98.1 6.2E-07 2.1E-11 69.4 2.0 49 199-254 15-76 (81)
13 2ea6_A Ring finger protein 4; 98.0 1.4E-06 4.8E-11 63.6 1.6 51 196-253 12-67 (69)
14 2csy_A Zinc finger protein 183 98.0 4.8E-06 1.6E-10 63.5 4.2 51 194-253 10-60 (81)
15 2yur_A Retinoblastoma-binding 98.0 2.9E-06 9.9E-11 64.1 2.9 51 196-253 12-63 (74)
16 3dpl_R Ring-box protein 1; ubi 98.0 3.1E-06 1.1E-10 69.6 3.1 49 199-254 37-101 (106)
17 1chc_A Equine herpes virus-1 r 98.0 3.9E-06 1.3E-10 61.6 3.0 50 197-254 3-52 (68)
18 2d8t_A Dactylidin, ring finger 97.9 3E-06 1E-10 63.2 1.7 50 196-254 12-61 (71)
19 2ecw_A Tripartite motif-contai 97.9 1.4E-05 4.7E-10 60.2 5.0 50 197-253 17-70 (85)
20 3ztg_A E3 ubiquitin-protein li 97.9 9.5E-06 3.2E-10 63.0 4.2 54 193-253 7-61 (92)
21 2ecn_A Ring finger protein 141 97.8 2E-06 6.7E-11 63.7 -0.2 47 197-253 13-59 (70)
22 3ng2_A RNF4, snurf, ring finge 97.8 5E-06 1.7E-10 61.2 2.0 51 196-253 7-62 (71)
23 2ysl_A Tripartite motif-contai 97.8 7.9E-06 2.7E-10 60.6 2.9 52 196-254 17-69 (73)
24 2ecy_A TNF receptor-associated 97.8 9.3E-06 3.2E-10 59.6 2.8 50 196-253 12-61 (66)
25 2ecv_A Tripartite motif-contai 97.8 1.9E-05 6.4E-10 59.4 4.2 51 197-254 17-71 (85)
26 2ct0_A Non-SMC element 1 homol 97.7 1.1E-05 3.7E-10 62.9 2.6 53 196-254 12-64 (74)
27 2djb_A Polycomb group ring fin 97.7 1.5E-05 5.2E-10 59.5 2.9 49 197-254 13-62 (72)
28 2xeu_A Ring finger protein 4; 97.7 1.1E-05 3.6E-10 58.0 1.7 50 198-254 2-56 (64)
29 2ecj_A Tripartite motif-contai 97.7 2.2E-05 7.7E-10 55.5 3.2 46 196-248 12-58 (58)
30 2ysj_A Tripartite motif-contai 97.7 3.9E-05 1.3E-09 55.6 4.4 46 196-248 17-63 (63)
31 1t1h_A Gspef-atpub14, armadill 97.6 2.1E-05 7.2E-10 59.2 2.7 51 195-253 4-54 (78)
32 4a0k_B E3 ubiquitin-protein li 97.6 8.5E-06 2.9E-10 68.5 0.5 48 200-254 49-112 (117)
33 1e4u_A Transcriptional repress 97.5 4.6E-05 1.6E-09 59.2 3.3 56 197-256 9-64 (78)
34 2egp_A Tripartite motif-contai 97.5 1.6E-05 5.4E-10 59.7 0.1 51 197-254 10-65 (79)
35 4ayc_A E3 ubiquitin-protein li 97.5 1.3E-05 4.3E-10 67.4 -0.8 50 198-256 52-101 (138)
36 1g25_A CDK-activating kinase a 97.4 5.3E-05 1.8E-09 55.3 1.8 50 198-253 2-54 (65)
37 3lrq_A E3 ubiquitin-protein li 97.4 4.7E-05 1.6E-09 60.7 1.3 51 196-254 19-70 (100)
38 3k1l_B Fancl; UBC, ring, RWD, 97.3 0.0001 3.5E-09 72.8 3.2 56 196-254 305-373 (381)
39 3fl2_A E3 ubiquitin-protein li 97.2 0.00013 4.4E-09 59.8 2.7 50 197-254 50-99 (124)
40 1jm7_A BRCA1, breast cancer ty 97.2 0.00015 5.1E-09 57.7 2.5 49 198-253 20-69 (112)
41 2y43_A E3 ubiquitin-protein li 97.2 6.7E-05 2.3E-09 59.1 0.5 49 197-254 20-69 (99)
42 2ckl_B Ubiquitin ligase protei 97.2 0.00016 5.3E-09 62.1 2.6 49 197-253 52-101 (165)
43 2ckl_A Polycomb group ring fin 97.0 0.00016 5.3E-09 58.0 1.4 49 197-254 13-62 (108)
44 4ap4_A E3 ubiquitin ligase RNF 97.0 0.00013 4.4E-09 59.0 0.8 54 197-257 5-63 (133)
45 1z6u_A NP95-like ring finger p 96.9 0.00033 1.1E-08 60.2 2.6 49 198-254 77-125 (150)
46 3hct_A TNF receptor-associated 96.9 0.0005 1.7E-08 56.0 3.0 51 196-254 15-65 (118)
47 1rmd_A RAG1; V(D)J recombinati 96.8 0.00028 9.6E-09 57.0 1.3 50 197-254 21-70 (116)
48 2y1n_A E3 ubiquitin-protein li 96.8 0.00055 1.9E-08 68.0 3.5 51 197-255 330-380 (389)
49 4ap4_A E3 ubiquitin ligase RNF 96.8 0.00041 1.4E-08 56.0 1.9 51 197-254 70-125 (133)
50 2vje_B MDM4 protein; proto-onc 96.7 0.00039 1.3E-08 51.3 1.3 53 194-254 2-56 (63)
51 3l11_A E3 ubiquitin-protein li 96.7 0.00015 5.3E-09 58.5 -1.6 50 197-254 13-62 (115)
52 2kre_A Ubiquitin conjugation f 96.5 0.0029 9.8E-08 51.0 4.9 52 194-254 24-75 (100)
53 2kr4_A Ubiquitin conjugation f 96.5 0.0022 7.6E-08 49.9 3.9 50 196-254 11-60 (85)
54 4ic3_A E3 ubiquitin-protein li 96.2 0.00054 1.9E-08 51.8 -0.7 45 197-254 22-67 (74)
55 1wgm_A Ubiquitin conjugation f 96.2 0.0041 1.4E-07 49.9 4.0 51 196-254 19-69 (98)
56 2vje_A E3 ubiquitin-protein li 96.0 0.0022 7.4E-08 47.4 1.7 48 198-254 7-57 (64)
57 2c2l_A CHIP, carboxy terminus 96.0 0.0035 1.2E-07 56.4 3.3 49 197-253 206-254 (281)
58 1jm7_B BARD1, BRCA1-associated 95.9 0.00075 2.6E-08 54.9 -1.5 46 197-253 20-66 (117)
59 2ea5_A Cell growth regulator w 95.7 0.0064 2.2E-07 45.6 3.2 51 193-255 9-59 (68)
60 1bor_A Transcription factor PM 95.7 0.0015 5E-08 46.9 -0.4 46 197-254 4-49 (56)
61 3nw0_A Non-structural maintena 95.7 0.0039 1.3E-07 57.7 2.3 51 198-255 179-230 (238)
62 3knv_A TNF receptor-associated 95.6 0.002 6.8E-08 54.8 -0.1 51 195-253 27-77 (141)
63 3hcs_A TNF receptor-associated 95.1 0.0089 3.1E-07 51.2 2.4 51 196-254 15-65 (170)
64 2f42_A STIP1 homology and U-bo 94.7 0.014 4.9E-07 52.1 2.8 50 197-254 104-153 (179)
65 2yu4_A E3 SUMO-protein ligase 94.6 0.022 7.6E-07 44.8 3.4 48 197-251 5-59 (94)
66 2ecg_A Baculoviral IAP repeat- 94.5 0.017 5.7E-07 43.5 2.3 45 197-254 23-68 (75)
67 1wim_A KIAA0161 protein; ring 94.4 0.019 6.6E-07 44.7 2.5 51 197-252 3-62 (94)
68 3htk_C E3 SUMO-protein ligase 93.3 0.054 1.9E-06 51.5 3.7 51 197-254 179-232 (267)
69 3t6p_A Baculoviral IAP repeat- 92.7 0.014 4.7E-07 56.8 -1.2 45 197-254 293-338 (345)
70 2yho_A E3 ubiquitin-protein li 91.5 0.026 8.9E-07 43.4 -0.7 47 197-255 16-62 (79)
71 2bay_A PRE-mRNA splicing facto 90.5 0.12 4.1E-06 38.0 2.2 46 200-254 4-50 (61)
72 2lri_C Autoimmune regulator; Z 89.1 0.092 3.2E-06 39.7 0.5 55 192-253 5-61 (66)
73 1weo_A Cellulose synthase, cat 84.4 0.87 3E-05 37.0 3.8 51 198-254 15-70 (93)
74 2l43_A N-teminal domain from h 81.8 0.31 1.1E-05 38.6 0.3 54 196-252 22-76 (88)
75 1weu_A Inhibitor of growth fam 79.5 0.8 2.7E-05 36.8 1.9 52 193-251 30-85 (91)
76 1wen_A Inhibitor of growth fam 75.6 0.53 1.8E-05 35.9 -0.2 55 191-252 8-66 (71)
77 2ku3_A Bromodomain-containing 71.1 0.49 1.7E-05 36.2 -1.3 52 197-251 14-66 (71)
78 2k16_A Transcription initiatio 69.7 0.49 1.7E-05 35.7 -1.6 53 196-252 15-69 (75)
79 2ri7_A Nucleosome-remodeling f 67.0 0.81 2.8E-05 39.3 -1.0 52 197-252 6-60 (174)
80 2l5u_A Chromodomain-helicase-D 66.8 0.81 2.8E-05 33.6 -0.9 49 196-251 8-58 (61)
81 3u5n_A E3 ubiquitin-protein li 66.8 0.41 1.4E-05 42.7 -3.0 50 196-252 4-55 (207)
82 1f62_A Transcription factor WS 63.1 1.2 4.2E-05 31.0 -0.5 47 200-250 1-49 (51)
83 1wev_A Riken cDNA 1110020M19; 61.5 0.33 1.1E-05 38.3 -4.1 56 195-253 12-74 (88)
84 3ql9_A Transcriptional regulat 58.6 5.8 0.0002 33.7 2.8 49 196-251 54-111 (129)
85 2vnf_A ING 4, P29ING4, inhibit 57.9 0.39 1.3E-05 35.3 -4.0 49 195-250 6-58 (60)
86 1wep_A PHF8; structural genomi 52.9 5.7 0.00019 30.2 1.7 53 196-252 9-64 (79)
87 2jmi_A Protein YNG1, ING1 homo 51.9 0.8 2.7E-05 36.7 -3.4 51 193-250 20-75 (90)
88 1mm2_A MI2-beta; PHD, zinc fin 49.9 0.98 3.4E-05 33.2 -3.0 48 197-251 7-56 (61)
89 2ysm_A Myeloid/lymphoid or mix 49.7 1.7 5.8E-05 34.9 -1.9 39 196-238 4-42 (111)
90 2e6r_A Jumonji/ARID domain-con 47.8 0.85 2.9E-05 36.3 -3.9 54 194-251 11-66 (92)
91 4gne_A Histone-lysine N-methyl 47.7 2.4 8.3E-05 34.8 -1.2 49 193-248 9-59 (107)
92 3o36_A Transcription intermedi 44.0 1.6 5.5E-05 38.0 -3.1 49 197-252 2-52 (184)
93 3v43_A Histone acetyltransfera 43.5 8.7 0.0003 31.0 1.5 35 198-235 4-43 (112)
94 2lbm_A Transcriptional regulat 43.5 8.6 0.00029 33.1 1.5 47 197-250 61-116 (142)
95 2vpb_A Hpygo1, pygopus homolog 42.5 8.1 0.00028 28.8 1.1 35 195-233 4-40 (65)
96 1we9_A PHD finger family prote 39.5 6.8 0.00023 28.4 0.2 53 196-251 3-58 (64)
97 1wew_A DNA-binding family prot 38.0 29 0.00098 26.3 3.6 55 191-251 8-72 (78)
98 2yt5_A Metal-response element- 37.1 6.5 0.00022 28.6 -0.2 53 196-251 3-61 (66)
99 1wem_A Death associated transc 36.7 25 0.00087 26.2 3.1 55 193-252 10-71 (76)
100 3vk6_A E3 ubiquitin-protein li 34.5 21 0.00073 29.3 2.4 35 216-256 17-51 (101)
101 2ko5_A Ring finger protein Z; 34.2 10 0.00034 31.2 0.4 45 199-253 28-72 (99)
102 2xb1_A Pygopus homolog 2, B-ce 34.1 6.9 0.00024 31.6 -0.5 50 200-252 4-62 (105)
103 2g6q_A Inhibitor of growth pro 33.3 1.5 5.1E-05 32.5 -4.3 49 195-250 7-59 (62)
104 1fp0_A KAP-1 corepressor; PHD 32.4 5 0.00017 32.1 -1.6 49 196-251 22-72 (88)
105 1xwh_A Autoimmune regulator; P 31.9 2.8 9.7E-05 31.0 -3.0 49 196-251 5-55 (66)
106 3kv5_D JMJC domain-containing 31.9 4.6 0.00016 41.0 -2.4 52 197-252 35-89 (488)
107 2lv9_A Histone-lysine N-methyl 31.7 6.7 0.00023 31.3 -1.0 49 198-251 27-76 (98)
108 2yql_A PHD finger protein 21A; 31.6 2.1 7E-05 30.7 -3.7 48 196-250 6-55 (56)
109 1x4i_A Inhibitor of growth pro 30.4 5.8 0.0002 30.0 -1.5 52 196-252 3-56 (70)
110 3ask_A E3 ubiquitin-protein li 25.8 8.7 0.0003 35.5 -1.5 49 199-251 174-225 (226)
111 3c6w_A P28ING5, inhibitor of g 24.4 1.8 6.2E-05 31.7 -5.1 47 197-250 7-57 (59)
112 2kwj_A Zinc finger protein DPF 24.0 14 0.00049 29.9 -0.4 35 200-237 2-42 (114)
113 1wee_A PHD finger family prote 22.2 16 0.00055 27.2 -0.4 51 197-251 14-66 (72)
114 3i2d_A E3 SUMO-protein ligase 21.2 1.1E+02 0.0036 30.3 5.1 49 202-253 246-299 (371)
115 2e6s_A E3 ubiquitin-protein li 20.1 6.8 0.00023 30.2 -2.9 46 201-250 28-76 (77)
116 2ro1_A Transcription intermedi 20.1 9.5 0.00033 33.6 -2.4 47 199-252 2-50 (189)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.74 E-value=6e-19 Score=132.39 Aligned_cols=56 Identities=34% Similarity=0.789 Sum_probs=50.5
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+++..||||+++. ++++++||+|+|++++||+.||.+|+.++++.+||+|+++|+.
T Consensus 4 ~~~~~CrIC~~~~--~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEEC--SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCC--CCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 5678999999863 4568999999999999999999999999999999999999974
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=8.7e-18 Score=132.49 Aligned_cols=61 Identities=28% Similarity=0.719 Sum_probs=54.4
Q ss_pred cccCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 194 d~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+.++++..|+||+++.++++++++||+|+|++++||+.||++|+..+++.+||+|+++|..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 10 ITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CCCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3445677899999887777889999999999999999999999999888899999999974
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.46 E-value=1.3e-07 Score=69.89 Aligned_cols=55 Identities=31% Similarity=0.793 Sum_probs=42.9
Q ss_pred ccccCCCCeeEEeccCCCCC-CeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 193 EEIAEEEAVCRICLDICEEG-NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 193 ed~~eee~~CRICl~~~eeg-~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
++..+++..|.||++....+ ....+||. +.+|..|+.+|+..+. +|++|+.++..
T Consensus 8 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~~--~CP~Cr~~~~~ 63 (69)
T 2kiz_A 8 GTEEDTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITNK--KCPICRVDIEA 63 (69)
T ss_dssp CCSTTCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHCS--BCTTTCSBSCS
T ss_pred cCcCCCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcCC--CCcCcCccccC
Confidence 34445677899999876543 45678986 5899999999998854 79999998764
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=1.5e-07 Score=70.91 Aligned_cols=52 Identities=19% Similarity=0.635 Sum_probs=41.2
Q ss_pred ccCCCCeeEEeccCCCCCCe-eeccCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018961 195 IAEEEAVCRICLDICEEGNT-LKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~-Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
..+++..|.||++....++. ..+||. +.+|..|+.+|+..+ ..|++|++++.
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~ 71 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSG 71 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCC
Confidence 34567889999987655443 568886 589999999999875 59999998865
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=4.1e-07 Score=68.08 Aligned_cols=52 Identities=23% Similarity=0.650 Sum_probs=40.6
Q ss_pred CCCCeeEEeccCCCCCC-eeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeecc
Q 018961 197 EEEAVCRICLDICEEGN-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (348)
Q Consensus 197 eee~~CRICl~~~eeg~-~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~ 255 (348)
+++..|.||++....+. ..++||. +.+|..|+.+|+..+. .|++|++++..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~~--~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEVRK--VCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHHCS--BCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHcCC--cCCCcCcccccc
Confidence 44678999998865433 3456886 5899999999998854 999999988654
No 6
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.28 E-value=3.1e-07 Score=72.30 Aligned_cols=51 Identities=24% Similarity=0.646 Sum_probs=40.6
Q ss_pred cCCCCeeEEeccCCCCCC-eeeccCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018961 196 AEEEAVCRICLDICEEGN-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~-~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
.+++..|.||++....++ ...+||. +.+|..|+.+|+..+ ..|++|+.++.
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS--GTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT--CBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC--CcCcCcCccCC
Confidence 356788999998765555 4568987 589999999999764 59999998864
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.20 E-value=3.1e-07 Score=69.44 Aligned_cols=55 Identities=25% Similarity=0.704 Sum_probs=42.3
Q ss_pred ccccCCCCeeEEeccCCCCCC-eeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 193 EEIAEEEAVCRICLDICEEGN-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 193 ed~~eee~~CRICl~~~eeg~-~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
++..+++..|.||++....+. ..++||. +.+|..|+.+|+..+ ..|++|+.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 64 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH--DSCPVCRKSLTG 64 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT--CSCTTTCCCCCC
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC--CcCcCcCCccCC
Confidence 334456788999998765443 3567886 589999999999754 699999999764
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.19 E-value=5.7e-07 Score=63.36 Aligned_cols=50 Identities=20% Similarity=0.477 Sum_probs=39.9
Q ss_pred CCCCeeEEeccCCCC--CCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018961 197 EEEAVCRICLDICEE--GNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 197 eee~~CRICl~~~ee--g~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
+++..|.||++...+ .....+||. +.+|..|+.+|+..+ ..|++|+.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 456779999987533 236678986 589999999999986 69999998764
No 9
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=1.5e-06 Score=66.49 Aligned_cols=56 Identities=18% Similarity=0.490 Sum_probs=44.2
Q ss_pred cccCCCCeeEEeccCCCCCC--eeeccCcccCcccccCHHHHHHHHHHc-CCccccccCceeec
Q 018961 194 EIAEEEAVCRICLDICEEGN--TLKMECSCKGALRLVHEECAIRWFSTK-GNKNCEVCGKEVQN 254 (348)
Q Consensus 194 d~~eee~~CRICl~~~eeg~--~Li~PC~CkGslk~VH~~CL~kWl~~k-~~~~CElCk~~y~~ 254 (348)
+..++...|.||++...+++ +..+||. +.+|..|+.+|+..+ +...|++|+..+..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhccCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 34455778999998765433 6778886 689999999999886 45799999998764
No 10
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.18 E-value=3.1e-07 Score=64.87 Aligned_cols=50 Identities=26% Similarity=0.705 Sum_probs=38.6
Q ss_pred CCCCeeEEeccCCCCCC-eeecc-CcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018961 197 EEEAVCRICLDICEEGN-TLKME-CSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 197 eee~~CRICl~~~eeg~-~Li~P-C~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
+++..|-||++..+.++ ....| |. +.+|..|+.+|+.. +..|++|+.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCG-----HGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSC-----CEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCC-----CcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 44677999998865443 45666 75 58999999999976 458999998764
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.15 E-value=1.2e-06 Score=70.58 Aligned_cols=52 Identities=21% Similarity=0.474 Sum_probs=39.1
Q ss_pred CCeeEEeccCCCCCC----------------eeeccCcccCcccccCHHHHHHHHHH---cCCccccccCceeecc
Q 018961 199 EAVCRICLDICEEGN----------------TLKMECSCKGALRLVHEECAIRWFST---KGNKNCEVCGKEVQNL 255 (348)
Q Consensus 199 e~~CRICl~~~eeg~----------------~Li~PC~CkGslk~VH~~CL~kWl~~---k~~~~CElCk~~y~~~ 255 (348)
+..|-||++...... ...+||. +.+|..||.+|+.. +...+|++|+..|...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 358999998753211 1157887 59999999999975 3467999999998743
No 12
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=6.2e-07 Score=69.40 Aligned_cols=49 Identities=18% Similarity=0.509 Sum_probs=35.7
Q ss_pred CCeeEEeccCCC-----------CCC-eeecc-CcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 199 EAVCRICLDICE-----------EGN-TLKME-CSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 199 e~~CRICl~~~e-----------eg~-~Li~P-C~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+..|-||++..+ .++ ...+| |. +.+|..||.+|+..+ .+|++|++++..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~ 76 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECN-----HSFHNCCMSLWVKQN--NRCPLCQQDWVV 76 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTS-----CEEEHHHHHHHTTTC--CBCTTTCCBCCE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCC-----CccChHHHHHHHHhC--CCCCCcCCCcch
Confidence 455777776542 222 44555 76 699999999999875 499999998764
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=1.4e-06 Score=63.57 Aligned_cols=51 Identities=24% Similarity=0.621 Sum_probs=39.4
Q ss_pred cCCCCeeEEeccCCCC----CC-eeeccCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018961 196 AEEEAVCRICLDICEE----GN-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 196 ~eee~~CRICl~~~ee----g~-~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
.++...|-||++...+ +. ...++|. +.+|..|+.+|+.. +..|++|+.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 3556789999987532 12 2668887 58999999999987 459999999875
No 14
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=4.8e-06 Score=63.50 Aligned_cols=51 Identities=25% Similarity=0.563 Sum_probs=41.3
Q ss_pred cccCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018961 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 194 d~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
+..++...|.||++... ++.++||. +.+|..|+.+|+.. ...|++|+..+.
T Consensus 10 ~~~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQ--NPVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp SCCCCCSBCSSSCSBCC--SEEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred ccCCCCCCCcCCCchhc--CeeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 34455678999998753 57788987 58899999999976 459999999986
No 15
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.98 E-value=2.9e-06 Score=64.06 Aligned_cols=51 Identities=22% Similarity=0.527 Sum_probs=41.8
Q ss_pred cCCCCeeEEeccCCCCCCeeecc-CcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018961 196 AEEEAVCRICLDICEEGNTLKME-CSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~P-C~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
.+++..|.||++... ++..+| |. +.+|..|+.+|+..++...|++|+.++.
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMT--DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCT--TCEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHh--CCeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 345678999998654 577788 76 5899999999999887789999999754
No 16
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.97 E-value=3.1e-06 Score=69.60 Aligned_cols=49 Identities=22% Similarity=0.437 Sum_probs=36.5
Q ss_pred CCeeEEeccCCCCC----------------CeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 199 EAVCRICLDICEEG----------------NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 199 e~~CRICl~~~eeg----------------~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+..|-||++..++. ....+||. +.+|..||.+|+.. +.+|++|+.++.+
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWEF 101 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCCE
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHc--CCcCcCCCCccee
Confidence 35688888664321 13457787 69999999999987 4699999999753
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.95 E-value=3.9e-06 Score=61.57 Aligned_cols=50 Identities=22% Similarity=0.589 Sum_probs=40.0
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+++..|.||++...+ .....||. +.+|..|+.+|+..+ ..|++|+.++..
T Consensus 3 ~~~~~C~IC~~~~~~-~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSN-YSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCS-CEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccC-CcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHh
Confidence 456789999987542 24778987 579999999999875 599999999864
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=3e-06 Score=63.21 Aligned_cols=50 Identities=22% Similarity=0.537 Sum_probs=40.3
Q ss_pred cCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
.+++..|.||++... ++..+||. +.+|..|+.+|+..+ ..|++|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~--~~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCV--HPVSLPCK-----HVFCYLCVKGASWLG--KRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCS--SEEEETTT-----EEEEHHHHHHCTTCS--SBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccC--CCEEccCC-----CHHHHHHHHHHHHCC--CcCcCcCchhCH
Confidence 355678999997643 56778887 589999999999764 699999999864
No 19
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.88 E-value=1.4e-05 Score=60.22 Aligned_cols=50 Identities=26% Similarity=0.682 Sum_probs=40.8
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHc----CCccccccCceee
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK----GNKNCEVCGKEVQ 253 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k----~~~~CElCk~~y~ 253 (348)
+++..|.||++... ++..+||. +.+|..|+.+|+... +...|++|+..+.
T Consensus 17 ~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 17 KEEVTCPICLELLK--EPVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CTTTSCTTTCSCCS--SCEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred ccCCCCcCCChhhC--cceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 45678999998754 46678886 589999999999884 3789999999876
No 20
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.88 E-value=9.5e-06 Score=62.97 Aligned_cols=54 Identities=20% Similarity=0.515 Sum_probs=44.1
Q ss_pred ccccCCCCeeEEeccCCCCCCeeecc-CcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018961 193 EEIAEEEAVCRICLDICEEGNTLKME-CSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 193 ed~~eee~~CRICl~~~eeg~~Li~P-C~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
.+..+++-.|.||++... ++...| |. +.++..||.+|+..++...|++|+..+.
T Consensus 7 ~~~~~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMT--DAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCCTTTEETTTTEECS--SCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cccCCcCCCCCCCChhhc--CceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 344466789999997654 577888 76 5899999999999887889999999873
No 21
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=2e-06 Score=63.69 Aligned_cols=47 Identities=26% Similarity=0.735 Sum_probs=38.7
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
++...|.||++...+ ..+||. +.+|..|+.+|+. .+..|++|++++.
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 13 TDEEECCICMDGRAD---LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCSSSCCSCCS---EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTT
T ss_pred CCCCCCeeCCcCccC---cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCccc
Confidence 456789999987543 778987 5799999999997 4679999998876
No 22
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.84 E-value=5e-06 Score=61.19 Aligned_cols=51 Identities=24% Similarity=0.620 Sum_probs=39.7
Q ss_pred cCCCCeeEEeccCCCC----CC-eeeccCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018961 196 AEEEAVCRICLDICEE----GN-TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 196 ~eee~~CRICl~~~ee----g~-~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
.+++..|-||++...+ ++ ....||. +.+|..|+.+|+..+ ..|++|+..+.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 62 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKIN 62 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccC
Confidence 3556789999976421 22 3678887 589999999999875 59999999876
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=7.9e-06 Score=60.58 Aligned_cols=52 Identities=29% Similarity=0.637 Sum_probs=41.3
Q ss_pred cCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHH-cCCccccccCceeec
Q 018961 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST-KGNKNCEVCGKEVQN 254 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~-k~~~~CElCk~~y~~ 254 (348)
.+++..|.||++... ++...||. +.+|..|+.+|+.. .+...|++|+.++..
T Consensus 17 ~~~~~~C~IC~~~~~--~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQ--KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCS--SEEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccC--CeEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 355678999998654 57777886 58999999999974 346799999998763
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=9.3e-06 Score=59.58 Aligned_cols=50 Identities=20% Similarity=0.491 Sum_probs=39.5
Q ss_pred cCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018961 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
.+++..|.||++... ++...+|. +.+|..|+.+|+. +++..|++|+.++.
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLC--SPKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIV 61 (66)
T ss_dssp CCCCEECTTTCCEES--SCCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCC
T ss_pred CCcCCCCCCCChHhc--CeeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCC
Confidence 355678999997654 45567887 5899999999996 44679999999875
No 25
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=1.9e-05 Score=59.45 Aligned_cols=51 Identities=29% Similarity=0.685 Sum_probs=41.0
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHH----cCCccccccCceeec
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST----KGNKNCEVCGKEVQN 254 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~----k~~~~CElCk~~y~~ 254 (348)
++...|.||++... ++..+||. +.+|..|+.+|+.. .+...|++|+..+..
T Consensus 17 ~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLT--QPLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCS--SCBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccC--CceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 45678999998754 46677886 58999999999987 346899999999763
No 26
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.75 E-value=1.1e-05 Score=62.89 Aligned_cols=53 Identities=21% Similarity=0.619 Sum_probs=40.3
Q ss_pred cCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
++....|-||++....+.. -+ .|. +.+|..||.+||+.+++.+|++|++++..
T Consensus 12 ~~~i~~C~IC~~~i~~g~~--C~-~C~---h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQS--CE-TCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEE--CS-SSC---CEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred cCCCCcCcchhhHcccCCc--cC-CCC---chhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3556789999987655432 11 443 58999999999988877899999988764
No 27
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=1.5e-05 Score=59.50 Aligned_cols=49 Identities=22% Similarity=0.521 Sum_probs=39.0
Q ss_pred CCCCeeEEeccCCCCCCeee-ccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 197 EEEAVCRICLDICEEGNTLK-MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li-~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+++..|.||++... ++.. .+|. +.+|..|+.+|+.. ...|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 13 TPYILCSICKGYLI--DATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQ 62 (72)
T ss_dssp CGGGSCTTTSSCCS--SCEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCS
T ss_pred CCCCCCCCCChHHH--CcCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCc
Confidence 45678999998654 3555 4887 58999999999977 4699999999864
No 28
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.70 E-value=1.1e-05 Score=58.01 Aligned_cols=50 Identities=22% Similarity=0.558 Sum_probs=38.6
Q ss_pred CCCeeEEeccCCCC-----CCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 198 EEAVCRICLDICEE-----GNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 198 ee~~CRICl~~~ee-----g~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
++..|.||++...+ ......+|. +.+|..|+.+|+.. +..|++|+.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCCc
Confidence 35679999986432 123577887 58999999999987 4599999998763
No 29
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=2.2e-05 Score=55.49 Aligned_cols=46 Identities=28% Similarity=0.785 Sum_probs=36.1
Q ss_pred cCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHH-cCCcccccc
Q 018961 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST-KGNKNCEVC 248 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~-k~~~~CElC 248 (348)
.+++..|.||++... ++..+||. +.+|..|+.+|+.. +++..|++|
T Consensus 12 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLK--EPVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCS--SCCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccC--ccEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 345678999998754 35677886 58999999999874 456899998
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=3.9e-05 Score=55.62 Aligned_cols=46 Identities=30% Similarity=0.705 Sum_probs=36.6
Q ss_pred cCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHc-CCcccccc
Q 018961 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK-GNKNCEVC 248 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k-~~~~CElC 248 (348)
.+++..|.||++... ++..+||. +.+|..|+.+|+... ++..|++|
T Consensus 17 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQ--KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCS--SCEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhC--CeEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 455778999998754 46777886 589999999999864 46799998
No 31
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.64 E-value=2.1e-05 Score=59.22 Aligned_cols=51 Identities=16% Similarity=0.380 Sum_probs=41.3
Q ss_pred ccCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018961 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
...++-.|.||++... ++...||. +.+++.|+.+|+.. +..+|++|+.++.
T Consensus 4 ~~~~~~~C~IC~~~~~--~Pv~~~Cg-----H~fc~~Ci~~~~~~-~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 4 EFPEYFRCPISLELMK--DPVIVSTG-----QTYERSSIQKWLDA-GHKTCPKSQETLL 54 (78)
T ss_dssp CCSSSSSCTTTSCCCS--SEEEETTT-----EEEEHHHHHHHHTT-TCCBCTTTCCBCS
T ss_pred CCcccCCCCCcccccc--CCEEcCCC-----CeecHHHHHHHHHH-CcCCCCCCcCCCC
Confidence 3456788999998643 57888887 58999999999964 4679999999875
No 32
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.64 E-value=8.5e-06 Score=68.47 Aligned_cols=48 Identities=23% Similarity=0.504 Sum_probs=0.0
Q ss_pred CeeEEeccCCCC--------------CC--eeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 200 AVCRICLDICEE--------------GN--TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 200 ~~CRICl~~~ee--------------g~--~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
..|-||++..++ ++ .+..||. +.+|..|+.+|+..+ .+|++|+.++.+
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~~--~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKTR--QVCPLDNREWEF 112 (117)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHcC--CcCCCCCCeeee
Confidence 469999976432 11 1224676 699999999999884 599999999753
No 33
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.54 E-value=4.6e-05 Score=59.23 Aligned_cols=56 Identities=23% Similarity=0.473 Sum_probs=44.8
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeeccc
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP 256 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~p 256 (348)
+++..|-||++..+..+....||.|. +.+++.|+.+|... ++..|++|+..|..-+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCCCc
Confidence 45678999999765556677888884 68999999998754 5689999999998654
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.49 E-value=1.6e-05 Score=59.66 Aligned_cols=51 Identities=27% Similarity=0.662 Sum_probs=40.9
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHc-----CCccccccCceeec
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK-----GNKNCEVCGKEVQN 254 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k-----~~~~CElCk~~y~~ 254 (348)
+++..|.||++... ++..+||. +.+|..|+.+|+... +...|++|+..+..
T Consensus 10 ~~~~~C~IC~~~~~--~p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLT--EPLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECS--SCCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccC--CeeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 45788999998754 46677886 589999999999873 36799999999763
No 35
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.46 E-value=1.3e-05 Score=67.43 Aligned_cols=50 Identities=20% Similarity=0.633 Sum_probs=40.0
Q ss_pred CCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeeccc
Q 018961 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP 256 (348)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~p 256 (348)
++..|.||++... ++..+||. |.+|..|+.+|+.. +..|++|+.++...+
T Consensus 52 ~~~~C~iC~~~~~--~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 52 NELQCIICSEYFI--EAVTLNCA-----HSFCSYCINEWMKR--KIECPICRKDIKSKT 101 (138)
T ss_dssp HHSBCTTTCSBCS--SEEEETTS-----CEEEHHHHHHHTTT--CSBCTTTCCBCCCEE
T ss_pred ccCCCcccCcccC--CceECCCC-----CCccHHHHHHHHHc--CCcCCCCCCcCCCCC
Confidence 4467999998753 57788986 58999999999976 458999999886443
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.38 E-value=5.3e-05 Score=55.33 Aligned_cols=50 Identities=22% Similarity=0.524 Sum_probs=37.7
Q ss_pred CCCeeEEecc-CCCCCC--eeeccCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018961 198 EEAVCRICLD-ICEEGN--TLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 198 ee~~CRICl~-~~eeg~--~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
++..|.||++ ...+.. .+..||. +.+|..|+.+|+.. +...|++|+..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCccc
Confidence 3567999998 433221 2467887 58999999999875 4578999999876
No 37
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.35 E-value=4.7e-05 Score=60.73 Aligned_cols=51 Identities=25% Similarity=0.563 Sum_probs=41.6
Q ss_pred cCCCCeeEEeccCCCCCCeee-ccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 196 AEEEAVCRICLDICEEGNTLK-MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li-~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
-+++..|.||++... ++.. .+|. +.+|..||.+|+..++ ..|++|+..+..
T Consensus 19 l~~~~~C~IC~~~~~--~p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 19 IAEVFRCFICMEKLR--DARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQL 70 (100)
T ss_dssp HHHHTBCTTTCSBCS--SEEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred CCCCCCCccCCcccc--CccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCCH
Confidence 345678999998754 4676 8987 5899999999999864 699999999853
No 38
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.30 E-value=0.0001 Score=72.82 Aligned_cols=56 Identities=27% Similarity=0.654 Sum_probs=40.9
Q ss_pred cCCCCeeEEeccCCCC-CCeeeccCc---ccCcccccCHHHHHHHHHHcCC---------ccccccCceeec
Q 018961 196 AEEEAVCRICLDICEE-GNTLKMECS---CKGALRLVHEECAIRWFSTKGN---------KNCEVCGKEVQN 254 (348)
Q Consensus 196 ~eee~~CRICl~~~ee-g~~Li~PC~---CkGslk~VH~~CL~kWl~~k~~---------~~CElCk~~y~~ 254 (348)
++....|-||++...+ |..-...|. |+ +.+|..||.+||+...+ ..|+.|++++..
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 3567889999987654 322234463 54 69999999999986432 589999998764
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.23 E-value=0.00013 Score=59.82 Aligned_cols=50 Identities=22% Similarity=0.480 Sum_probs=40.3
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+++..|.||++... ++...||. |.+|..|+.+|+.. +...|++|+..+..
T Consensus 50 ~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVF--RPITTVCQ-----HNVCKDCLDRSFRA-QVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCS--SEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHc--CcEEeeCC-----CcccHHHHHHHHhH-CcCCCCCCCccCCC
Confidence 34578999998654 57778887 57999999999983 45699999999864
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.19 E-value=0.00015 Score=57.71 Aligned_cols=49 Identities=20% Similarity=0.708 Sum_probs=39.3
Q ss_pred CCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHc-CCccccccCceee
Q 018961 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTK-GNKNCEVCGKEVQ 253 (348)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k-~~~~CElCk~~y~ 253 (348)
+...|.||++... ++...||. +.+|..|+.+|+..+ +...|++|+..+.
T Consensus 20 ~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 20 KILECPICLELIK--EPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HHTSCSSSCCCCS--SCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCCcccChhhc--CeEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 4568999998653 46677886 589999999999874 3569999999876
No 41
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.19 E-value=6.7e-05 Score=59.12 Aligned_cols=49 Identities=22% Similarity=0.561 Sum_probs=39.0
Q ss_pred CCCCeeEEeccCCCCCCeeec-cCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 197 EEEAVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~-PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+++..|.||++... ++... ||. +.+|..|+.+|+..+ ..|++|+..+..
T Consensus 20 ~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFN--IAMIIPQCS-----HNYCSLCIRKFLSYK--TQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCS--SEEECTTTC-----CEEEHHHHHHHHTTC--CBCTTTCCBCCG
T ss_pred CCCCCcccCChhhC--CcCEECCCC-----CHhhHHHHHHHHHCC--CCCCCCCCcCCh
Confidence 45678999998754 46555 787 589999999999853 699999998763
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.16 E-value=0.00016 Score=62.11 Aligned_cols=49 Identities=37% Similarity=0.802 Sum_probs=38.9
Q ss_pred CCCCeeEEeccCCCCCCeeec-cCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018961 197 EEEAVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~-PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
+++..|.||++... ++... ||. +.+|..|+.+|+.. ++..|++|+..+.
T Consensus 52 ~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLK--NTMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCS--SEEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCC
T ss_pred CCCCCCcccChHhh--CcCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCC
Confidence 34568999998754 46655 887 58999999999985 3579999999985
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.05 E-value=0.00016 Score=57.98 Aligned_cols=49 Identities=22% Similarity=0.628 Sum_probs=39.8
Q ss_pred CCCCeeEEeccCCCCCCeeec-cCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 197 EEEAVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~-PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+++..|.||++... ++... ||. +.+|..|+.+|+..+ ..|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~--~p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFI--DATTIIECL-----HSFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCS--SEEEETTTC-----CEEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred CCcCCCccCChHHh--CcCEeCCCC-----ChhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 45678999998754 46665 887 589999999999764 699999999764
No 44
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.03 E-value=0.00013 Score=58.96 Aligned_cols=54 Identities=20% Similarity=0.499 Sum_probs=41.5
Q ss_pred CCCCeeEEeccCCCC-----CCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeeccce
Q 018961 197 EEEAVCRICLDICEE-----GNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLPV 257 (348)
Q Consensus 197 eee~~CRICl~~~ee-----g~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~pv 257 (348)
.++..|-||++...+ .....++|. +.+|..|+.+|+..+ ..|++|+..+....+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTC--SBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhC--CCCCCCCCcCccccc
Confidence 456789999976532 123678997 589999999999765 499999999875543
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.94 E-value=0.00033 Score=60.20 Aligned_cols=49 Identities=20% Similarity=0.535 Sum_probs=40.2
Q ss_pred CCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+...|.||++... ++..+||. +.+|..|+.+|+.. +...|++|+..+..
T Consensus 77 ~~~~C~IC~~~~~--~pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 77 QSFMCVCCQELVY--QPVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQ 125 (150)
T ss_dssp HHTBCTTTSSBCS--SEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCT
T ss_pred cCCEeecCChhhc--CCEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCC
Confidence 4578999998653 57788987 58999999999985 45689999999874
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.87 E-value=0.0005 Score=56.01 Aligned_cols=51 Identities=22% Similarity=0.475 Sum_probs=40.5
Q ss_pred cCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
-+++..|.||++... ++...||. +.++..|+.+|+..++ ..|++|+..+..
T Consensus 15 ~~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALR--EAVQTPCG-----HRFCKACIIKSIRDAG-HKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhc--CeEECCcC-----ChhhHHHHHHHHhhCC-CCCCCCCCCcCH
Confidence 345678999997653 56778876 5899999999998764 499999998764
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.85 E-value=0.00028 Score=57.04 Aligned_cols=50 Identities=20% Similarity=0.503 Sum_probs=40.4
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+++..|.||++... ++...||. +.+|..|+.+|+... ...|++|+..+..
T Consensus 21 ~~~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 21 VKSISCQICEHILA--DPVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFP 70 (116)
T ss_dssp HHHTBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcHhc--CcEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence 44678999998653 57778886 589999999999874 4689999999764
No 48
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=96.83 E-value=0.00055 Score=68.01 Aligned_cols=51 Identities=20% Similarity=0.542 Sum_probs=40.7
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeecc
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~ 255 (348)
+....|.||++.. .++...||.. .+|..|+.+|+.. +...|++|+.++...
T Consensus 330 ~~~~~C~ICle~~--~~pv~lpCGH-----~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 330 STFQLCKICAEND--KDVKIEPCGH-----LMCTSCLTSWQES-EGQGCPFCRCEIKGT 380 (389)
T ss_dssp TSSSBCTTTSSSB--CCEEEETTCC-----EECHHHHHHHHHH-TCSBCTTTCCBCCEE
T ss_pred CCCCCCCccCcCC--CCeEEeCCCC-----hhhHHHHHHHHhc-CCCCCCCCCCccCCc
Confidence 3447999999764 3578899984 6799999999984 356999999998753
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.80 E-value=0.00041 Score=55.96 Aligned_cols=51 Identities=24% Similarity=0.604 Sum_probs=38.6
Q ss_pred CCCCeeEEeccCCCC----C-CeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 197 EEEAVCRICLDICEE----G-NTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 197 eee~~CRICl~~~ee----g-~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
++...|-||++...+ + .....+|. +.+|..|+.+|+..+ .+|++|+..+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHC--SBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcC--CCCCCCCCcCCh
Confidence 446779999976432 1 23566776 689999999999875 599999998863
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.74 E-value=0.00039 Score=51.33 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=38.2
Q ss_pred cccCCCCeeEEeccCCCCCCeee--ccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 194 EIAEEEAVCRICLDICEEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 194 d~~eee~~CRICl~~~eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+..+.+..|.||++... +..+ .||... .+-..|+.+|.... ..|++|+.++..
T Consensus 2 ~~~~~~~~C~IC~~~~~--~~~~~~~pCgH~----~~C~~C~~~~~~~~--~~CPiCR~~i~~ 56 (63)
T 2vje_B 2 DCQNLLKPCSLCEKRPR--DGNIIHGRTGHL----VTCFHCARRLKKAG--ASCPICKKEIQL 56 (63)
T ss_dssp -CGGGGSBCTTTSSSBS--CEEEEETTEEEE----EECHHHHHHHHHTT--CBCTTTCCBCCE
T ss_pred CCCCcCCCCcccCCcCC--CeEEEecCCCCH----hHHHHHHHHHHHhC--CcCCCcCchhhc
Confidence 34456778999998643 3444 499841 26889999998653 699999999763
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=96.66 E-value=0.00015 Score=58.50 Aligned_cols=50 Identities=20% Similarity=0.540 Sum_probs=40.1
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+++..|.||++... ++..+||. +.+|..|+.+|+.. ++..|++|+..+..
T Consensus 13 ~~~~~C~iC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILV--EPVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCS--SCEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccC--ceeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 34578999997654 57778887 58999999999964 35799999999864
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.49 E-value=0.0029 Score=51.02 Aligned_cols=52 Identities=6% Similarity=0.088 Sum_probs=41.5
Q ss_pred cccCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 194 d~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
....++-.|-||++.. .++.+.||. +.+-+.|+.+|+.. +.+|++|+.++..
T Consensus 24 ~~~p~~~~CpI~~~~m--~dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLM--TDPVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp SSCSTTTBCTTTCSBC--SSEEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred ccCcHhhCCcCccCcc--cCCeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 3445678999998764 368999975 47889999999974 5799999998763
No 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.46 E-value=0.0022 Score=49.92 Aligned_cols=50 Identities=6% Similarity=0.096 Sum_probs=40.5
Q ss_pred cCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
..++-.|-||++.. .++.+.||. +.+-+.|+.+|+.. +.+|++|+.++..
T Consensus 11 ~p~~~~CpI~~~~m--~dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLM--TDPVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBC--SSEEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred CchheECcccCchh--cCCeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 35678999998764 368999975 57889999999986 4699999998763
No 54
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=96.23 E-value=0.00054 Score=51.82 Aligned_cols=45 Identities=27% Similarity=0.617 Sum_probs=36.8
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccc-cCHHHHHHHHHHcCCccccccCceeec
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~-VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+++..|.||++.. .++..+||. +. +...|+.+| ..|++|+..+..
T Consensus 22 ~~~~~C~iC~~~~--~~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRN--IAIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSB--CCEEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCC--CCEEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccC
Confidence 4567899999764 357788997 46 999999999 699999998864
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.16 E-value=0.0041 Score=49.93 Aligned_cols=51 Identities=12% Similarity=0.063 Sum_probs=40.5
Q ss_pred cCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
..++-.|-||++.. .++.+.||. | +.+-+.|+.+|+.. +.+|++|+.++..
T Consensus 19 ~p~~~~CpI~~~~m--~dPV~~~cG--~--htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLM--CDPVVLPSS--R--VTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBC--SSEEECTTT--C--CEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred CcHhcCCcCccccc--cCCeECCCC--C--eEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 35678999998764 368999976 1 36789999999986 4699999998763
No 56
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=96.04 E-value=0.0022 Score=47.44 Aligned_cols=48 Identities=27% Similarity=0.402 Sum_probs=35.9
Q ss_pred CCCeeEEeccCCCCCCeeec--cCcccCcccc-cCHHHHHHHHHHcCCccccccCceeec
Q 018961 198 EEAVCRICLDICEEGNTLKM--ECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~--PC~CkGslk~-VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
++..|.||++.. .+.... ||.. . +=..|+.+|... +..|++|+.++..
T Consensus 7 ~~~~C~IC~~~~--~~~~~~~~pCgH-----~~~C~~C~~~~~~~--~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRP--KNGCIVHGKTGH-----LMACFTCAKKLKKR--NKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSC--SCEEEEETTEEE-----EEECHHHHHHHHHT--TCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCC--CCEEEECCCCCC-----hhhHHHHHHHHHHc--CCcCCCcCcchhc
Confidence 456799999864 345555 9973 4 458999999975 4589999998764
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.00 E-value=0.0035 Score=56.37 Aligned_cols=49 Identities=6% Similarity=0.009 Sum_probs=39.5
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
.+.-.|-||++.. .+|++.||. +.+-+.|+.+|+...+ .+|++|+.++.
T Consensus 206 ~~~~~c~i~~~~~--~dPv~~~~g-----h~f~~~~i~~~~~~~~-~~cP~~~~~~~ 254 (281)
T 2c2l_A 206 PDYLCGKISFELM--REPCITPSG-----ITYDRKDIEEHLQRVG-HFNPVTRSPLT 254 (281)
T ss_dssp CSTTBCTTTCSBC--SSEEECSSC-----CEEETTHHHHHHHHTC-SSCTTTCCCCC
T ss_pred CcccCCcCcCCHh--cCCeECCCC-----CEECHHHHHHHHHHCC-CCCcCCCCCCc
Confidence 3567899998764 469999985 4778899999998754 34999999886
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.88 E-value=0.00075 Score=54.90 Aligned_cols=46 Identities=20% Similarity=0.503 Sum_probs=38.0
Q ss_pred CCCCeeEEeccCCCCCCeeec-cCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018961 197 EEEAVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~-PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
+++..|.||++... ++... ||. +.++..|+.+|+. ..|++|+..+.
T Consensus 20 ~~~~~C~IC~~~~~--~pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILR--EPVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCS--SCBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred hhCCCCCCCChHhh--CccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 45788999998653 46776 886 6899999999997 68999999974
No 59
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.72 E-value=0.0064 Score=45.61 Aligned_cols=51 Identities=22% Similarity=0.425 Sum_probs=37.5
Q ss_pred ccccCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeecc
Q 018961 193 EEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (348)
Q Consensus 193 ed~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~ 255 (348)
|...+++..|.||++.. .+.+.+||... .+-..|+.+ ...|++|+..+...
T Consensus 9 e~~~~~~~~C~IC~~~~--~~~v~~pCgH~----~~C~~C~~~------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 9 EPSEENSKDCVVCQNGT--VNWVLLPCRHT----CLCDGCVKY------FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSCCCSSCCSSSSSSC--CCCEETTTTBC----CSCTTHHHH------CSSCTTTCCCCCCE
T ss_pred cccCCCCCCCCCcCcCC--CCEEEECCCCh----hhhHHHHhc------CCCCCCCCcchhce
Confidence 34445577899999863 35788999852 277899873 36999999998753
No 60
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.70 E-value=0.0015 Score=46.86 Aligned_cols=46 Identities=13% Similarity=0.267 Sum_probs=36.2
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+++..|.||++... ++..+||. +.++..|+.+| ...|++|++.+..
T Consensus 4 ~~~~~C~IC~~~~~--~p~~l~Cg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAK--CPKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCB--CCSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccC--CeEEcCCC-----CcccHHHHccC-----CCCCCcCCcEeec
Confidence 45677999998754 46788987 47899998874 5699999998763
No 61
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.70 E-value=0.0039 Score=57.74 Aligned_cols=51 Identities=22% Similarity=0.646 Sum_probs=39.5
Q ss_pred CCCeeEEeccCCCCCCeeeccCc-ccCcccccCHHHHHHHHHHcCCccccccCceeecc
Q 018961 198 EEAVCRICLDICEEGNTLKMECS-CKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (348)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~PC~-CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~ 255 (348)
.-..|.||.+--..|. -|. |. ..+|..|+.+|++.+++..|+.|+.....-
T Consensus 179 ~i~~C~iC~~iv~~g~----~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ----SCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCE----ECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCc----ccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4788999987655432 242 54 589999999999988888999999986643
No 62
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=95.58 E-value=0.002 Score=54.82 Aligned_cols=51 Identities=22% Similarity=0.505 Sum_probs=40.0
Q ss_pred ccCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018961 195 IAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
..+++-.|-||++... +++..+|. +.+++.|+.+|+.. +...|++|+.++.
T Consensus 27 ~l~~~~~C~IC~~~~~--~pv~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVLR--RPFQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhhc--CcEECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCccc
Confidence 3456778999997653 56777887 58999999999964 4579999999753
No 63
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=95.11 E-value=0.0089 Score=51.21 Aligned_cols=51 Identities=22% Similarity=0.475 Sum_probs=40.2
Q ss_pred cCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
.++.-.|-||++... +++..||. +.+...|+.+|+..++ .+|++|+..+..
T Consensus 15 ~~~~~~C~IC~~~~~--~pv~~~Cg-----H~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALR--EAVQTPCG-----HRFCKACIIKSIRDAG-HKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhc--CcEECCCC-----CHHHHHHHHHHHHhCC-CCCCCCccCcch
Confidence 345678999998653 57777775 5899999999998754 499999998764
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=94.74 E-value=0.014 Score=52.13 Aligned_cols=50 Identities=6% Similarity=0.018 Sum_probs=40.6
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
.++-.|-||++... +|++.||. +.+=+.|+.+|+...+. +||+|+.++..
T Consensus 104 p~~f~CPI~~elm~--DPV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMR--EPCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCS--SEEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCG
T ss_pred cHhhcccCccccCC--CCeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCCh
Confidence 45788999987643 68999985 57889999999987654 79999998763
No 65
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.63 E-value=0.022 Score=44.79 Aligned_cols=48 Identities=17% Similarity=0.439 Sum_probs=38.5
Q ss_pred CCCCeeEEeccCCCCCCeeecc-CcccCcccccCHHHHHHHHHHc----CCccccc--cCce
Q 018961 197 EEEAVCRICLDICEEGNTLKME-CSCKGALRLVHEECAIRWFSTK----GNKNCEV--CGKE 251 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~P-C~CkGslk~VH~~CL~kWl~~k----~~~~CEl--Ck~~ 251 (348)
.++-.|-||++... ++++.| |. +.+-+.|+.+|+... +..+|++ |+..
T Consensus 5 ~~~~~CPI~~~~~~--dPV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMK--KPVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCS--SEEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhc--CCEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 55788999997643 688886 86 578899999999864 3579999 9865
No 66
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.52 E-value=0.017 Score=43.46 Aligned_cols=45 Identities=27% Similarity=0.603 Sum_probs=34.7
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccc-cCHHHHHHHHHHcCCccccccCceeec
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~-VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+++..|.||++.. .++..+||.. . +...|+.++ ..|++|+.++..
T Consensus 23 ~~~~~C~IC~~~~--~~~~~~pCgH-----~~~C~~C~~~~------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRN--IAIVFVPCGH-----LVTCKQCAEAV------DKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSC--CCBCCSSSCC-----CCBCHHHHHHC------SBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCC--CCEEEecCCC-----HHHHHHHhhCC------CCCccCCceecC
Confidence 3456899999864 3577889973 5 899998642 699999999864
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.39 E-value=0.019 Score=44.73 Aligned_cols=51 Identities=18% Similarity=0.440 Sum_probs=38.0
Q ss_pred CCCCeeEEeccCCCCCCeee-ccCcccCcccccCHHHHHHHHHHc---C---Cccccc--cCcee
Q 018961 197 EEEAVCRICLDICEEGNTLK-MECSCKGALRLVHEECAIRWFSTK---G---NKNCEV--CGKEV 252 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li-~PC~CkGslk~VH~~CL~kWl~~k---~---~~~CEl--Ck~~y 252 (348)
.+...|-||++.....+.+. .+|. |.+.+.|+.+|+..+ + ...|+. |+..+
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCCcCCcccCcccccccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 34667999998765433333 4787 489999999999764 2 469999 99884
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=93.25 E-value=0.054 Score=51.47 Aligned_cols=51 Identities=16% Similarity=0.363 Sum_probs=40.7
Q ss_pred CCCCeeEEeccCCCCCCeeec-cCcccCcccccCHHHHHHHHHHcCCccccc--cCceeec
Q 018961 197 EEEAVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEV--CGKEVQN 254 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~-PC~CkGslk~VH~~CL~kWl~~k~~~~CEl--Ck~~y~~ 254 (348)
..+..|-||++.. .+|+.. .|. +.+=+.|+.+|+...+...|++ |+..+..
T Consensus 179 ~~el~CPIcl~~f--~DPVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPY--EAPLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBC--SSEEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcc--cCCeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 5578899998764 357764 776 4788999999998777789999 9998763
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=92.72 E-value=0.014 Score=56.83 Aligned_cols=45 Identities=29% Similarity=0.736 Sum_probs=36.9
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccc-cCHHHHHHHHHHcCCccccccCceeec
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRL-VHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~-VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
+++..|.||++.. .++...||.. . +...|+.+| ..|++|+..+..
T Consensus 293 ~~~~~C~IC~~~~--~~~v~lpCgH-----~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKE--VSVVFIPCGH-----LVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSB--CCEEEETTCC-----EEECTTTGGGC------SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcC--CceEEcCCCC-----hhHhHHHHhcC------CcCCCCCCCccC
Confidence 4568999999864 3578889984 5 899999998 599999999864
No 70
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=91.51 E-value=0.026 Score=43.35 Aligned_cols=47 Identities=26% Similarity=0.606 Sum_probs=35.7
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceeecc
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNL 255 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~ 255 (348)
+++..|.||++.. .+....||... .+=..|+.+| ..|++|+..+...
T Consensus 16 ~~~~~C~IC~~~~--~~~v~~pCgH~----~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 16 KEAMLCMVCCEEE--INSTFCPCGHT----VCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp HHHTBCTTTSSSB--CCEEEETTCBC----CBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred CCCCEeEEeCccc--CcEEEECCCCH----HHHHHHHHhc------CcCCCCCchhhCe
Confidence 3457899999763 35788899842 2568999887 3999999998753
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=90.54 E-value=0.12 Score=38.01 Aligned_cols=46 Identities=9% Similarity=0.197 Sum_probs=35.6
Q ss_pred CeeEEeccCCCCCCeeec-cCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 200 AVCRICLDICEEGNTLKM-ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 200 ~~CRICl~~~eeg~~Li~-PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
-.|.||++.-+ ++.+. +|. +.+=+.|+++|+...+ +|+++++++..
T Consensus 4 ~~CpIs~~~m~--dPV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPR--RPVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCS--SEEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCCG
T ss_pred EEecCCCCCCC--CCEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCCh
Confidence 46888887643 67777 655 4788999999998765 69999988763
No 72
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=89.05 E-value=0.092 Score=39.70 Aligned_cols=55 Identities=18% Similarity=0.364 Sum_probs=37.4
Q ss_pred CccccCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHH--cCCccccccCceee
Q 018961 192 DEEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKEVQ 253 (348)
Q Consensus 192 ~ed~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--k~~~~CElCk~~y~ 253 (348)
+++.+.....|.||.+. ++ |+ -| .+=-+.+|..||.-.+.. ++.+.|+.|...-.
T Consensus 5 ~~~~~~~~~~C~vC~~~---~~-ll-~C--d~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 5 GQQNLAPGARCGVCGDG---TD-VL-RC--THCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp TTTCCCTTCCCTTTSCC---TT-CE-EC--SSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred cccCCCCCCCcCCCCCC---Ce-EE-EC--CCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 34555667789999753 33 33 23 344479999999877754 36799999987643
No 73
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=84.40 E-value=0.87 Score=37.02 Aligned_cols=51 Identities=25% Similarity=0.478 Sum_probs=36.7
Q ss_pred CCCeeEEeccCC---CCCCeee--ccCcccCcccccCHHHHHHHHHHcCCccccccCceeec
Q 018961 198 EEAVCRICLDIC---EEGNTLK--MECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQN 254 (348)
Q Consensus 198 ee~~CRICl~~~---eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~ 254 (348)
...+|.||-+.- ..|+.++ +.|. --|=+.|++-=.+. ++..|+.||++|+-
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~-----FPvCrpCyEYErke-G~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECG-----FPACRPCYEYERRE-GTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSC-----CCCCHHHHHHHHHT-SCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccC-----ChhhHHHHHHHHhc-cCccccccCCcccc
Confidence 458999998652 3556665 3444 35667998876554 78999999999984
No 74
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=81.79 E-value=0.31 Score=38.58 Aligned_cols=54 Identities=30% Similarity=0.495 Sum_probs=34.6
Q ss_pred cCCCCeeEEeccCCC-CCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCcee
Q 018961 196 AEEEAVCRICLDICE-EGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252 (348)
Q Consensus 196 ~eee~~CRICl~~~e-eg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y 252 (348)
.+++..|.||...+. .++.|+ -|. +--..+|..|+.-=..-.+.+.|+.|....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll-~CD--~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVIL-FCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEE-ECS--SSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCCCCCCCCCEE-ECC--CCCchhhcccCCCCccCCCceECccccCcc
Confidence 356788999987642 223333 333 334589999986333334789999997653
No 75
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.48 E-value=0.8 Score=36.81 Aligned_cols=52 Identities=23% Similarity=0.491 Sum_probs=33.0
Q ss_pred ccccCCCCeeEEeccCCCCCCeeec--cCcccCcccccCHHHHHHHHHH--cCCccccccCce
Q 018961 193 EEIAEEEAVCRICLDICEEGNTLKM--ECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKE 251 (348)
Q Consensus 193 ed~~eee~~CRICl~~~eeg~~Li~--PC~CkGslk~VH~~CL~kWl~~--k~~~~CElCk~~ 251 (348)
+.++++...| ||..... + .++. -|.|.. .|+|..|+. |.. .+++.|+.|...
T Consensus 30 ~~d~~e~~yC-iC~~~~~-g-~MI~CD~~dC~~--~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 30 PVDPNEPTYC-LCHQVSY-G-EMIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCSCCCBCS-TTCCBCC-S-CCCCCSCSSCSC--CCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CcCCCCCcEE-ECCCCCC-C-CEeEecCCCCCC--CCEecccCC--cCcCCCCCEECcCccCc
Confidence 3444566777 9987543 3 3442 244642 599999987 333 367999999764
No 76
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=75.55 E-value=0.53 Score=35.92 Aligned_cols=55 Identities=22% Similarity=0.454 Sum_probs=34.4
Q ss_pred CCccccCCCCeeEEeccCCCCCCeeec--cCcccCcccccCHHHHHHHHHH--cCCccccccCcee
Q 018961 191 NDEEIAEEEAVCRICLDICEEGNTLKM--ECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKEV 252 (348)
Q Consensus 191 ~~ed~~eee~~CRICl~~~eeg~~Li~--PC~CkGslk~VH~~CL~kWl~~--k~~~~CElCk~~y 252 (348)
+.+..+++...| ||..... | .++. -|.|.. .++|..|+. |.. .+.+.|+.|...-
T Consensus 8 ~~~~d~~~~~~C-~C~~~~~-g-~MI~CD~~~C~~--~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 8 DMPVDPNEPTYC-LCHQVSY-G-EMIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCCCTTSCCCS-TTCCCSC-S-SEECCSCSSCSC--CCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred ccccCCCCCCEE-ECCCCCC-C-CEeEeeCCCCCC--ccEecccCC--cCcCCCCCEECCCCCccc
Confidence 334445567788 8987543 3 3442 233542 599999987 433 3679999997643
No 77
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=71.08 E-value=0.49 Score=36.16 Aligned_cols=52 Identities=31% Similarity=0.542 Sum_probs=33.0
Q ss_pred CCCCeeEEeccCC-CCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCce
Q 018961 197 EEEAVCRICLDIC-EEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKE 251 (348)
Q Consensus 197 eee~~CRICl~~~-eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~ 251 (348)
++...|.||...+ ++++.|+ -|. +=-..+|..|+.-=..-.+.+.|+.|...
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll-~CD--~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVIL-FCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEE-ECS--SSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEE-ECC--CCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4567899998764 2334443 232 33359999998632223468999999654
No 78
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=69.66 E-value=0.49 Score=35.67 Aligned_cols=53 Identities=15% Similarity=0.286 Sum_probs=33.5
Q ss_pred cCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHH--cCCccccccCcee
Q 018961 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKEV 252 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--k~~~~CElCk~~y 252 (348)
.++...|.||....+ ++.++. |.+=-.++|..|+.--... .+.+.|+.|....
T Consensus 15 ~~~~~~C~~C~~~~~-~~~mi~---CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPDD-GSPMIG---CDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCCS-SCCEEE---CSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCCCCC-CCCEEE---cCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 455667999986654 334442 2233479999998643322 2578999997654
No 79
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=67.05 E-value=0.81 Score=39.33 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=33.7
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHH---cCCccccccCcee
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST---KGNKNCEVCGKEV 252 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~---k~~~~CElCk~~y 252 (348)
++...| +|...++++..++.=-.| -.|+|..|+.---.. .+...|+.|+..-
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C---~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRC---QNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTT---CCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCC---CchhChhhcCCchhhccCccCeecCCCcchh
Confidence 567789 998765544455532234 379999998532222 4578999998753
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=66.83 E-value=0.81 Score=33.63 Aligned_cols=49 Identities=24% Similarity=0.554 Sum_probs=32.3
Q ss_pred cCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHH--HcCCccccccCce
Q 018961 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS--TKGNKNCEVCGKE 251 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~--~k~~~~CElCk~~ 251 (348)
.+++..|.+|... ++.+. |.+=-+.+|..||.-=+. -++.+.|+.|..+
T Consensus 8 ~~~~~~C~vC~~~---g~ll~----CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIIL----CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEE----CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---CcEEE----CCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4557789999763 33332 234446999999875332 2467999999753
No 81
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=66.76 E-value=0.41 Score=42.71 Aligned_cols=50 Identities=22% Similarity=0.518 Sum_probs=33.6
Q ss_pred cCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHH--cCCccccccCcee
Q 018961 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKEV 252 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--k~~~~CElCk~~y 252 (348)
++++..|.+|... |+ ++ - |.|--+.+|..||.-.+.. .|.+.|+.|...-
T Consensus 4 d~~~~~C~~C~~~---g~-ll-~--Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG---GD-LL-C--CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC---EE-EE-E--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC---Cc-eE-E--cCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3456779999754 22 33 2 4445579999998655543 4679999998653
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=63.14 E-value=1.2 Score=31.04 Aligned_cols=47 Identities=21% Similarity=0.493 Sum_probs=28.7
Q ss_pred CeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHH--HcCCccccccCc
Q 018961 200 AVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS--TKGNKNCEVCGK 250 (348)
Q Consensus 200 ~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~--~k~~~~CElCk~ 250 (348)
+.|.||...+++++.+. | .+=-+.+|..||.-=+. -++.+.|+.|..
T Consensus 1 a~C~vC~~~~~~~~ll~--C--d~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 1 ARCKVCRKKGEDDKLIL--C--DECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCCTTTCCSSCCSCCEE--C--TTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCCEEE--C--CCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 36889987654433332 2 23346999999842111 135788999964
No 83
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.48 E-value=0.33 Score=38.32 Aligned_cols=56 Identities=21% Similarity=0.486 Sum_probs=36.8
Q ss_pred ccCCCCeeEEeccCCCC-CCeeeccCcccCcccccCHHHHHHHHH------HcCCccccccCceee
Q 018961 195 IAEEEAVCRICLDICEE-GNTLKMECSCKGALRLVHEECAIRWFS------TKGNKNCEVCGKEVQ 253 (348)
Q Consensus 195 ~~eee~~CRICl~~~ee-g~~Li~PC~CkGslk~VH~~CL~kWl~------~k~~~~CElCk~~y~ 253 (348)
..++...|.+|.....+ ++.|+. |.+=-..+|..|+.-=+. -.+.+.|..|....+
T Consensus 12 ~~e~~~~C~vC~~~~~~~~~~ll~---CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 12 AMEMGLACVVCRQMTVASGNQLVE---CQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HHHHCCSCSSSCCCCCCTTCCEEE---CSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred cCCCCCcCCCCCCCCCCCCCceEE---CCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 34567899999976432 344443 223346899999875442 247899999977654
No 84
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=58.57 E-value=5.8 Score=33.71 Aligned_cols=49 Identities=22% Similarity=0.481 Sum_probs=32.7
Q ss_pred cCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHH------HHH---cCCccccccCce
Q 018961 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRW------FST---KGNKNCEVCGKE 251 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kW------l~~---k~~~~CElCk~~ 251 (348)
+..+..|++|.+. | .|+ .|.+--+.+|..||..= -.. .+.+.|..|...
T Consensus 54 Dg~~~~C~vC~dG---G-~Ll---cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---G-NLI---CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC---S-EEE---ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCC---C-eeE---ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3455679999753 3 343 13445589999999973 232 578999999543
No 85
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=57.93 E-value=0.39 Score=35.34 Aligned_cols=49 Identities=22% Similarity=0.563 Sum_probs=29.5
Q ss_pred ccCCCCeeEEeccCCCCCCeeec--cCcccCcccccCHHHHHHHHHH--cCCccccccCc
Q 018961 195 IAEEEAVCRICLDICEEGNTLKM--ECSCKGALRLVHEECAIRWFST--KGNKNCEVCGK 250 (348)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~Li~--PC~CkGslk~VH~~CL~kWl~~--k~~~~CElCk~ 250 (348)
++++...| ||..... | .++. -|.|. ..++|..|+. +.. .+.+.|+.|..
T Consensus 6 d~~e~~~C-~C~~~~~-g-~mi~CD~cdC~--~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 6 DPNEPTYC-LCHQVSY-G-EMIGCDNPDCS--IEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp ---CCEET-TTTEECC-S-EEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCCEE-ECCCcCC-C-CEEEeCCCCCC--CceEehhcCC--CCcCCCCCEECcCccC
Confidence 34556677 8986533 3 4442 23354 2599999987 433 26789988864
No 86
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=52.85 E-value=5.7 Score=30.23 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=33.7
Q ss_pred cCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHH---cCCccccccCcee
Q 018961 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST---KGNKNCEVCGKEV 252 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~---k~~~~CElCk~~y 252 (348)
+++...| ||....+.+..+|.=-.|. .|+|..|+.-=-.. -....|+.|....
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQ---DWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTC---CEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCC---CcEEeeecCcccccccCCCeEECCCccccc
Confidence 3556677 8987665444555422343 69999998532222 2568999998764
No 87
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=51.94 E-value=0.8 Score=36.74 Aligned_cols=51 Identities=24% Similarity=0.501 Sum_probs=31.2
Q ss_pred ccccCCCCeeEEeccCCCCCCeee--ccCcccCcccccCHHHHHHHHHH--cCCccccc-cCc
Q 018961 193 EEIAEEEAVCRICLDICEEGNTLK--MECSCKGALRLVHEECAIRWFST--KGNKNCEV-CGK 250 (348)
Q Consensus 193 ed~~eee~~CRICl~~~eeg~~Li--~PC~CkGslk~VH~~CL~kWl~~--k~~~~CEl-Ck~ 250 (348)
++++++...| ||..... |+ ++ --|.|.. .|+|..|+. |.. .+.+.|+. |..
T Consensus 20 ~~~~~~~~yC-iC~~~~~-g~-MI~CD~c~C~~--eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 20 GNNNQEEVYC-FCRNVSY-GP-MVACDNPACPF--EWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp ----CCSCCS-TTTCCCS-SS-EECCCSSSCSC--SCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCCCCCcEE-EeCCCCC-CC-EEEecCCCCcc--ccCcCccCC--CCcCCCCCccCChhhcc
Confidence 3445667788 9986533 33 54 2355652 699999985 322 36799999 963
No 88
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=49.90 E-value=0.98 Score=33.16 Aligned_cols=48 Identities=25% Similarity=0.455 Sum_probs=30.5
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHH--cCCccccccCce
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKE 251 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--k~~~~CElCk~~ 251 (348)
.++..|.+|.+. ++ |+ - |.+--+.+|..||.-=+.. .+.+.|+.|...
T Consensus 7 ~~~~~C~vC~~~---g~-ll-~--Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GE-LL-C--CDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC---SS-CB-C--CSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC---CC-EE-E--cCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 457789999753 23 22 2 2233468999998643322 367899999764
No 89
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=49.74 E-value=1.7 Score=34.93 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=25.5
Q ss_pred cCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHH
Q 018961 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS 238 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~ 238 (348)
..++..|.||.+.++.+ .|+ -| .+=-+.+|..||.-++.
T Consensus 4 ~~~~~~C~~C~~~g~~~-~ll-~C--~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLL-DQF-FC--TTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCSCBTTTCCCCCTT-TSE-EC--SSSCCEECTTTTTCCCC
T ss_pred CCCCCCCcCCCCCCCCc-CCe-EC--CCCCCCcChHHhCCccc
Confidence 35678899998765432 233 23 33347999999987654
No 90
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.82 E-value=0.85 Score=36.27 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=32.6
Q ss_pred cccCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHH--HHcCCccccccCce
Q 018961 194 EIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWF--STKGNKNCEVCGKE 251 (348)
Q Consensus 194 d~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl--~~k~~~~CElCk~~ 251 (348)
....+...|.||....+++ .|+ -|. +=-+.+|..||.-=+ .-++.+.|+.|...
T Consensus 11 ~~~~~~~~C~vC~~~~~~~-~ll-~CD--~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCSRGDEDD-KLL-FCD--GCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSCCSGGGG-GCE-ECT--TTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred hhccCCCCCccCCCcCCCC-CEE-EcC--CCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3345567899998765432 222 232 223689999985111 12367899999764
No 91
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=47.70 E-value=2.4 Score=34.84 Aligned_cols=49 Identities=27% Similarity=0.370 Sum_probs=28.7
Q ss_pred ccccCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHH--cCCcccccc
Q 018961 193 EEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVC 248 (348)
Q Consensus 193 ed~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--k~~~~CElC 248 (348)
+...+++..|.+|.+. | .|+ -|..++--+.+|..||. +.. +|++.|+-|
T Consensus 9 ~~~~~~~~~C~~C~~~---G-~ll-~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c 59 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDG---G-ELV-MCDKKDCPKAYHLLCLN--LTQPPYGKWECPWH 59 (107)
T ss_dssp -CCCSSCSSCTTTCCC---S-EEE-ECCSTTCCCEECTGGGT--CSSCCSSCCCCGGG
T ss_pred CCcCCCCCCCCcCCCC---C-cEe-EECCCCCCcccccccCc--CCcCCCCCEECCCC
Confidence 3344667889999742 3 333 47522334699999997 433 345555533
No 92
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=44.02 E-value=1.6 Score=38.00 Aligned_cols=49 Identities=22% Similarity=0.547 Sum_probs=32.7
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHH--cCCccccccCcee
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST--KGNKNCEVCGKEV 252 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~--k~~~~CElCk~~y 252 (348)
+++..|.+|... |+ ++ - |.+--+.+|..|+.--+.. ++.+.|+.|+..-
T Consensus 2 ~~~~~C~~C~~~---g~-ll-~--Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 2 PNEDWCAVCQNG---GE-LL-C--CEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSCSSCTTTCCC---SS-CE-E--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccccCCCC---Ce-ee-e--cCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 346779999754 33 22 2 3344479999998655543 4679999998653
No 93
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=43.51 E-value=8.7 Score=31.03 Aligned_cols=35 Identities=23% Similarity=0.402 Sum_probs=21.8
Q ss_pred CCCeeEEeccCCC-----CCCeeeccCcccCcccccCHHHHHH
Q 018961 198 EEAVCRICLDICE-----EGNTLKMECSCKGALRLVHEECAIR 235 (348)
Q Consensus 198 ee~~CRICl~~~e-----eg~~Li~PC~CkGslk~VH~~CL~k 235 (348)
...+|.+|+...+ .++.|+. | .+=-+.+|..||..
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~-C--~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELIS-C--ADCGNSGHPSCLKF 43 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEE-C--TTTCCEECHHHHTC
T ss_pred cCccccccCCchhhCcCCCchhceE-h--hhcCCCCCCchhcC
Confidence 4578999996532 2234552 2 23336899999964
No 94
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=43.46 E-value=8.6 Score=33.13 Aligned_cols=47 Identities=23% Similarity=0.509 Sum_probs=32.0
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHH---------HcCCccccccCc
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS---------TKGNKNCEVCGK 250 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~---------~k~~~~CElCk~ 250 (348)
..+..|++|.+. |+ |+ - |.+=-+.+|..||..=+. ..+.+.|..|..
T Consensus 61 g~~d~C~vC~~G---G~-Ll-c--CD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GN-LI-C--CDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCC---SS-EE-E--CSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCC---Cc-EE-e--CCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 346789999764 33 33 1 233347999999986441 357899999974
No 95
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=42.47 E-value=8.1 Score=28.79 Aligned_cols=35 Identities=23% Similarity=0.598 Sum_probs=21.7
Q ss_pred ccCCCCeeEEeccCCCCCCeeeccC--cccCcccccCHHHH
Q 018961 195 IAEEEAVCRICLDICEEGNTLKMEC--SCKGALRLVHEECA 233 (348)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~Li~PC--~CkGslk~VH~~CL 233 (348)
.++....|-+|......+..+| -| .|+ .|+|..|+
T Consensus 4 ~~~~~~~C~~C~~p~~~~~~mI-~CD~~C~---~WfH~~Cv 40 (65)
T 2vpb_A 4 SSDPVYPCGICTNEVNDDQDAI-LCEASCQ---KWFHRICT 40 (65)
T ss_dssp -----CBCTTTCSBCCTTSCEE-EBTTTTC---CEEEHHHH
T ss_pred CCCCcCcCccCCCccCCCCCeE-ecccCcc---ccCchhcc
Confidence 3566778999998765544444 45 354 69999996
No 96
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=39.53 E-value=6.8 Score=28.36 Aligned_cols=53 Identities=13% Similarity=0.267 Sum_probs=33.0
Q ss_pred cCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHH---cCCccccccCce
Q 018961 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST---KGNKNCEVCGKE 251 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~---k~~~~CElCk~~ 251 (348)
++++..|.||....+++..+|. | .+=-.|+|..|+.--... -....|+.|...
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~-C--d~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWIC-C--DLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEE-C--SSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEE-c--cCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4667889999877654445553 2 222379999997532221 145788888653
No 97
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=38.03 E-value=29 Score=26.27 Aligned_cols=55 Identities=24% Similarity=0.463 Sum_probs=32.8
Q ss_pred CCccccCCCCeeEEeccCCCCCCeeeccCc---ccCcccccCHHHHHHHHHH-------cCCccccccCce
Q 018961 191 NDEEIAEEEAVCRICLDICEEGNTLKMECS---CKGALRLVHEECAIRWFST-------KGNKNCEVCGKE 251 (348)
Q Consensus 191 ~~ed~~eee~~CRICl~~~eeg~~Li~PC~---CkGslk~VH~~CL~kWl~~-------k~~~~CElCk~~ 251 (348)
+++..+++...| ||....+.+ .+| -|. |. .|+|-.|+--=-.. .....|+.|+..
T Consensus 8 dd~~~~~~~~~C-iC~~~~~~g-~MI-~CD~~~C~---~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 8 EDPFQPEIKVRC-VCGNSLETD-SMI-QCEDPRCH---VWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCSSSCCCCCCC-SSCCCCCCS-CEE-ECSSTTTC---CEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred ccccCCCCCEEe-ECCCcCCCC-CEE-EECCccCC---ccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 344444567788 898764333 344 354 65 49999997421111 136789888754
No 98
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=37.08 E-value=6.5 Score=28.57 Aligned_cols=53 Identities=19% Similarity=0.370 Sum_probs=33.2
Q ss_pred cCCCCeeEEeccCCC-CCCeeeccCcccCcccccCHHHHHHHH-----HHcCCccccccCce
Q 018961 196 AEEEAVCRICLDICE-EGNTLKMECSCKGALRLVHEECAIRWF-----STKGNKNCEVCGKE 251 (348)
Q Consensus 196 ~eee~~CRICl~~~e-eg~~Li~PC~CkGslk~VH~~CL~kWl-----~~k~~~~CElCk~~ 251 (348)
++++..|.+|..... .++.|+ -| .+=-..+|..|+.-=+ .-.+.+.|..|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll-~C--d~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMV-IC--DKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEE-EC--SSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEE-EC--CCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 456788999987532 223333 22 2333689999986432 13577899998654
No 99
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=36.75 E-value=25 Score=26.21 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=32.9
Q ss_pred ccccCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHH-------HcCCccccccCcee
Q 018961 193 EEIAEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS-------TKGNKNCEVCGKEV 252 (348)
Q Consensus 193 ed~~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~-------~k~~~~CElCk~~y 252 (348)
+..+++...| ||....+ +..+|.==.|. .|+|..|+.-=.. ......|+.|....
T Consensus 10 ~~~d~~~~~C-~C~~~~~-~~~MI~Cd~C~---~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 10 EVYDPNALYC-ICRQPHN-NRFMICCDRCE---EWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CSCCTTCCCS-TTCCCCC-SSCEEECSSSC---CEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred cccCCCCCEE-ECCCccC-CCCEEEeCCCC---CcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 3344456778 8987654 33455322343 6999999842111 23578999997543
No 100
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=34.55 E-value=21 Score=29.30 Aligned_cols=35 Identities=26% Similarity=0.525 Sum_probs=28.8
Q ss_pred eccCcccCcccccCHHHHHHHHHHcCCccccccCceeeccc
Q 018961 216 KMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQNLP 256 (348)
Q Consensus 216 i~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~~~p 256 (348)
..||+ +.+=.+|+..|-+.+ .++|+.|+.++..+-
T Consensus 17 mIPCk-----HvFCydCa~~~~~~~-~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 17 MIPCK-----HVFCYDCAILHEKKG-DKMCPGCSDPVQRIE 51 (101)
T ss_dssp EETTC-----CEEEHHHHHHHHHTT-CCBCTTTCCBCSEEE
T ss_pred ecccc-----ccHHHHHHHHHHhcc-CCCCcCcCCeeeeeE
Confidence 46998 478889999998664 579999999988764
No 101
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=34.18 E-value=10 Score=31.16 Aligned_cols=45 Identities=20% Similarity=0.473 Sum_probs=33.1
Q ss_pred CCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHHcCCccccccCceee
Q 018961 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEVQ 253 (348)
Q Consensus 199 e~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y~ 253 (348)
.-.|..|+-+. ..|+ -|+ -+|.=..||..-++.++ .|+||++++.
T Consensus 28 ~~nCKsCWf~~---k~LV-~C~----dHYLCl~CLtlmL~~Sd--rCpIC~~pLP 72 (99)
T 2ko5_A 28 PQFCKSCWFEN---KGLV-ECN----NHYLCLNCLTLLLSVSN--RCPICKMPLP 72 (99)
T ss_dssp CCCCCSSCSCC---SSEE-ECS----SCEEEHHHHHHTCSSSS--EETTTTEECC
T ss_pred cccChhhcccc---CCee-eec----chhhHHHHHHHHHhhcc--CCcccCCcCC
Confidence 35588888653 2355 343 37999999998887765 9999999976
No 102
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=34.07 E-value=6.9 Score=31.64 Aligned_cols=50 Identities=20% Similarity=0.404 Sum_probs=32.9
Q ss_pred CeeEEeccCCCCCCeeeccC-cccCcccccCHHHHHH----HHH----HcCCccccccCcee
Q 018961 200 AVCRICLDICEEGNTLKMEC-SCKGALRLVHEECAIR----WFS----TKGNKNCEVCGKEV 252 (348)
Q Consensus 200 ~~CRICl~~~eeg~~Li~PC-~CkGslk~VH~~CL~k----Wl~----~k~~~~CElCk~~y 252 (348)
..|.||.....++..++.=| .|+ .|+|..|+.- .-. ..+...|+.|...-
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~---~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQ---KWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTC---CEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcc---cccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 46999998764444555444 686 6999999731 111 11468999998753
No 103
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=33.26 E-value=1.5 Score=32.54 Aligned_cols=49 Identities=22% Similarity=0.529 Sum_probs=29.2
Q ss_pred ccCCCCeeEEeccCCCCCCeeec--cCcccCcccccCHHHHHHHHHH--cCCccccccCc
Q 018961 195 IAEEEAVCRICLDICEEGNTLKM--ECSCKGALRLVHEECAIRWFST--KGNKNCEVCGK 250 (348)
Q Consensus 195 ~~eee~~CRICl~~~eeg~~Li~--PC~CkGslk~VH~~CL~kWl~~--k~~~~CElCk~ 250 (348)
++++...| ||..... | .++. -|.|. ..++|..|+. +.. .+.+.|+.|..
T Consensus 7 d~~e~~yC-~C~~~~~-g-~MI~CD~c~C~--~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 7 DPNEPTYC-LCNQVSY-G-EMIGCDNEQCP--IEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp ---CCEET-TTTEECC-S-EEEECSCTTCS--SCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCCCcEE-ECCCCCC-C-CeeeeeCCCCC--cccEecccCC--cCcCCCCCEECcCccc
Confidence 34556677 8976532 3 4542 34464 2699999986 322 25788988864
No 104
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=32.44 E-value=5 Score=32.05 Aligned_cols=49 Identities=18% Similarity=0.534 Sum_probs=32.3
Q ss_pred cCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHH--HcCCccccccCce
Q 018961 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS--TKGNKNCEVCGKE 251 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~--~k~~~~CElCk~~ 251 (348)
.+++..|.+|... |+.|. |.+--+.+|..||.-=+. -.+.+.|+.|...
T Consensus 22 d~n~~~C~vC~~~---g~LL~----CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVM----CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEE----CTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CCEEE----CCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 3556789999764 33222 445567999999843222 2367999999864
No 105
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=31.94 E-value=2.8 Score=30.99 Aligned_cols=49 Identities=27% Similarity=0.575 Sum_probs=31.1
Q ss_pred cCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHH--HcCCccccccCce
Q 018961 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS--TKGNKNCEVCGKE 251 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~--~k~~~~CElCk~~ 251 (348)
..++..|.||.+. ++.+. | .+--+.+|..||.-=+. -++.+.|+.|...
T Consensus 5 ~~~~~~C~vC~~~---g~ll~--C--D~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDG---GELIC--C--DGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCC---SSCEE--C--SSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCC---CCEEE--c--CCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 3567889999864 33232 2 24446899999863222 2367899999643
No 106
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=31.87 E-value=4.6 Score=40.97 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=31.4
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHHH---cCCccccccCcee
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFST---KGNKNCEVCGKEV 252 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~~---k~~~~CElCk~~y 252 (348)
.+...| ||....+.+..++.=..|. .|+|..|+.-=-.. -+...|+.|....
T Consensus 35 ~~~~yC-~C~~~~d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 35 PPPVYC-VCRQPYDVNRFMIECDICK---DWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCCEET-TTTEECCTTSCEEEBTTTC---CEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CCCeEE-eCCCcCCCCCCeEEccCCC---CceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 334445 8876654445566533454 69999997421111 1358999998653
No 107
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=31.68 E-value=6.7 Score=31.25 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=28.1
Q ss_pred CCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHH-HHcCCccccccCce
Q 018961 198 EEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWF-STKGNKNCEVCGKE 251 (348)
Q Consensus 198 ee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl-~~k~~~~CElCk~~ 251 (348)
+...| ||....+++ .++. | .+--.++|..|+.-=. .....+.|+.|+..
T Consensus 27 d~vrC-iC~~~~~~~-~mi~-C--d~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDG-YMIC-C--DKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCSS-CEEE-B--TTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCEEe-ECCCccCCC-cEEE-c--CCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 34457 887654443 4553 2 2334699999974210 01136899999743
No 108
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.62 E-value=2.1 Score=30.71 Aligned_cols=48 Identities=27% Similarity=0.555 Sum_probs=29.3
Q ss_pred cCCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHH--HcCCccccccCc
Q 018961 196 AEEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS--TKGNKNCEVCGK 250 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~--~k~~~~CElCk~ 250 (348)
++++..|.+|... ++.+. | .+--+.+|..||.-=+. -++.+.|+.|..
T Consensus 6 ~~~~~~C~vC~~~---g~ll~--C--d~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLM--C--DTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEE--C--SSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEE--c--CCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3557789999764 33222 3 24447899999863222 235678888753
No 109
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.42 E-value=5.8 Score=29.99 Aligned_cols=52 Identities=21% Similarity=0.450 Sum_probs=31.0
Q ss_pred cCCCCeeEEeccCCCCCCeeec--cCcccCcccccCHHHHHHHHHHcCCccccccCcee
Q 018961 196 AEEEAVCRICLDICEEGNTLKM--ECSCKGALRLVHEECAIRWFSTKGNKNCEVCGKEV 252 (348)
Q Consensus 196 ~eee~~CRICl~~~eeg~~Li~--PC~CkGslk~VH~~CL~kWl~~k~~~~CElCk~~y 252 (348)
+++...| ||.... .| .+|. -|.|. ..++|..|+.-=-...+.+.|+.|....
T Consensus 3 ~~~~~yC-~C~~~~-~g-~MI~CD~cdC~--~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 3 SGSSGYC-ICNQVS-YG-EMVGCDNQDCP--IEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CSCCCCS-TTSCCC-CS-SEECCSCTTCS--CCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCCCeEE-EcCCCC-CC-CEeEeCCCCCC--ccCCcccccccCcCCCCCEECCCCCccc
Confidence 3556677 587653 33 4442 34454 2699999986211113578999997653
No 110
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=25.79 E-value=8.7 Score=35.53 Aligned_cols=49 Identities=18% Similarity=0.345 Sum_probs=26.6
Q ss_pred CCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHH--HcC-CccccccCce
Q 018961 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS--TKG-NKNCEVCGKE 251 (348)
Q Consensus 199 e~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~--~k~-~~~CElCk~~ 251 (348)
+..|.+|....+++..|. |.|--..+|..||.-=+. -+| .+.|+.|..+
T Consensus 174 ~c~C~vC~~~~~~~~lL~----CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLM----CDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC--CCEE----CSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCCCCeEE----cCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 347888876544433332 334446999999862111 245 7899999653
No 111
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=24.38 E-value=1.8 Score=31.71 Aligned_cols=47 Identities=26% Similarity=0.537 Sum_probs=29.0
Q ss_pred CCCCeeEEeccCCCCCCeeec--cCcccCcccccCHHHHHHHHHH--cCCccccccCc
Q 018961 197 EEEAVCRICLDICEEGNTLKM--ECSCKGALRLVHEECAIRWFST--KGNKNCEVCGK 250 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~--PC~CkGslk~VH~~CL~kWl~~--k~~~~CElCk~ 250 (348)
++...| ||..... | .++. -|.|.. .++|..|+. +.. .+.+.|+.|..
T Consensus 7 ~e~~yC-~C~~~~~-g-~mi~CD~~~C~~--~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVSY-G-EMIGCDNPDCPI--EWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEECC-S-EEEECSCTTCSS--CEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCcEE-ECCCCCC-C-CeeEeeCCCCCC--CCEecccCC--cccCCCCCEECcCccC
Confidence 456667 8976532 3 4542 233542 599999987 333 25788988864
No 112
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=23.97 E-value=14 Score=29.89 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=21.3
Q ss_pred CeeEEeccCCC------CCCeeeccCcccCcccccCHHHHHHHH
Q 018961 200 AVCRICLDICE------EGNTLKMECSCKGALRLVHEECAIRWF 237 (348)
Q Consensus 200 ~~CRICl~~~e------eg~~Li~PC~CkGslk~VH~~CL~kWl 237 (348)
..|.||+.... +++.|+. |. +=-+.+|..||.-+.
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~-C~--~C~~~~H~~Cl~~~~ 42 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVS-CA--DCGRSGHPTCLQFTL 42 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEE-CS--SSCCEECTTTTTCCH
T ss_pred CcCccCCCCccccccCCCCCCCeE-eC--CCCCccchhhCCChh
Confidence 57999986541 1234442 32 223689999998663
No 113
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=22.22 E-value=16 Score=27.18 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=29.8
Q ss_pred CCCCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHH--HcCCccccccCce
Q 018961 197 EEEAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS--TKGNKNCEVCGKE 251 (348)
Q Consensus 197 eee~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~--~k~~~~CElCk~~ 251 (348)
++...| ||....+.++.+|.==.| ..|+|..|+.-=-. ......|+.|+..
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C---~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGC---GVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSS---CEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCC---CCccCCeeeccCccccCCCcEECCCccCC
Confidence 455678 787665445455542234 36999999642110 1235788888653
No 114
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=21.19 E-value=1.1e+02 Score=30.30 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=32.0
Q ss_pred eEEeccCCCCCCeeeccCcccCcccccCHHHHHH--HHH---HcCCccccccCceee
Q 018961 202 CRICLDICEEGNTLKMECSCKGALRLVHEECAIR--WFS---TKGNKNCEVCGKEVQ 253 (348)
Q Consensus 202 CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~k--Wl~---~k~~~~CElCk~~y~ 253 (348)
-.|-+-.--....+..||+-+ ..-|.+|++. |+. .++.+.|++|+..+.
T Consensus 246 ~~vSL~CPlS~~ri~~PvRg~---~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 246 TIMSLQCPISYTRMKYPSKSI---NCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp EEEESBCTTTSSBCSSEEEET---TCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eEEeecCCCccccccccCcCC---cCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 344443222345778888754 5778888643 553 357899999999864
No 115
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.11 E-value=6.8 Score=30.17 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=27.1
Q ss_pred eeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHH--HcC-CccccccCc
Q 018961 201 VCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS--TKG-NKNCEVCGK 250 (348)
Q Consensus 201 ~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~--~k~-~~~CElCk~ 250 (348)
.|.||....++++.|. | .+=-+.+|..||.-=+. -++ .+.|+.|..
T Consensus 28 ~C~vC~~~~~~~~ll~--C--D~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLL--C--DECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEE--C--SSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEE--c--CCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 7888876544444332 2 23336889999752111 135 678888864
No 116
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=20.10 E-value=9.5 Score=33.61 Aligned_cols=47 Identities=21% Similarity=0.534 Sum_probs=31.0
Q ss_pred CCeeEEeccCCCCCCeeeccCcccCcccccCHHHHHHHHH--HcCCccccccCcee
Q 018961 199 EAVCRICLDICEEGNTLKMECSCKGALRLVHEECAIRWFS--TKGNKNCEVCGKEV 252 (348)
Q Consensus 199 e~~CRICl~~~eeg~~Li~PC~CkGslk~VH~~CL~kWl~--~k~~~~CElCk~~y 252 (348)
++.|.+|... |+ |+ - |.|--+.+|..|+.-=+. -.|.+.|+.|...-
T Consensus 2 ~~~C~~C~~~---g~-ll-~--Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LV-M--CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SS-CC-C--CTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---Cc-ee-E--CCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 5679999754 33 32 2 455567999999743221 24679999998763
Done!