BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018962
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3
Length = 497
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 146/329 (44%), Gaps = 28/329 (8%)
Query: 10 SFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDT 69
SFW PYI+ L + ++PL + E E+ YL + ++ + + R+Y
Sbjct: 169 SFWQPYIQTLPSE-------YDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQY----- 216
Query: 70 VWFMAGSLFQQYPY--DIP-TEAFTFEIFKQAFVAVQSCVVHLQKVSLAR-RFALVPLGP 125
+F + Q +P+ +P ++FT+E ++ A +V + + +R AL+PL
Sbjct: 217 AYFY--KVIQTHPHANKLPLKDSFTYEDYRWAVSSVXTRQNQIPTEDGSRVTLALIPLWD 274
Query: 126 PLLAYSSKCKXXXXXXXXXXXXXXXRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYD 185
+ + ++AGE I ++ G + N++ +I+ GF ++N +D
Sbjct: 275 XCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHD 334
Query: 186 RLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRL------- 238
R+ ++ ++ D Y K V R G + VF +H E + +L +LR+
Sbjct: 335 RVKIKLGVSKSDRLYAXKAEVLARAGIPTSSVFALHFT-EPPISAQLLAFLRVFCXTEEE 393
Query: 239 --GYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTD 296
++ S + + + PVS E + L D L Y T+ ED+++L +
Sbjct: 394 LKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFLEDRASLLLKTYKTTIEEDKSVLKN 453
Query: 297 YNLHPKKRVATQLVRMEKKMLNACLQVTA 325
++L + + A +L EK++L ++ A
Sbjct: 454 HDLSVRAKXAIKLRLGEKEILEKAVKSAA 482
>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|B Chain B, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|C Chain C, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1OZV|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1P0Y|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
Length = 444
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 131/325 (40%), Gaps = 24/325 (7%)
Query: 12 WLPYIRELDRQRGR---------GQL--AVESPLLWSETELAYLTGSPTKAEILERAEGI 60
WL I L R+R R G L +S + WSE EL L GS + E +
Sbjct: 81 WLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYV 140
Query: 61 KREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFK-QAFVAVQS-CVVHLQKVSLARRF 118
K E +L+ + P + + F I + +AF +++ +V + L
Sbjct: 141 KNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHS 200
Query: 119 ALVPLGPPLLAYSSKCKXXXXXXXXXXXXXXXRPYKAGESIVV-WCGPQPNSKLLINYGF 177
A V AY K KAGE + + + + N++L ++YGF
Sbjct: 201 AGVTTEDH--AYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGF 258
Query: 178 VDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLR 237
++ + + ++ DP + DK VA+ NG F + R +LPYLR
Sbjct: 259 IEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPP--GLLPYLR 316
Query: 238 LGYVSDTSE--MQSVI--SSLGPI-CPVSPCMERAVLDQLADYFKARLAGYPATLSEDEA 292
L + T ++S+ + G + VS E + + + K+ LAGY T+ +D
Sbjct: 317 LVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRE 376
Query: 293 MLTDYNLHPKKRVATQLVRMEKKML 317
L + NL + +A + EK +L
Sbjct: 377 -LKEGNLDSRLAIAVGIREGEKMVL 400
>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|B Chain B, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|C Chain C, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H23|A Chain A, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|B Chain B, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|C Chain C, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H2E|A Chain A, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|B Chain B, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|C Chain C, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2J|A Chain A, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|B Chain B, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|C Chain C, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
Length = 440
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 131/325 (40%), Gaps = 24/325 (7%)
Query: 12 WLPYIRELDRQRGR---------GQL--AVESPLLWSETELAYLTGSPTKAEILERAEGI 60
WL I L R+R R G L +S + WSE EL L GS + E +
Sbjct: 77 WLSVILFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYV 136
Query: 61 KREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFK-QAFVAVQS-CVVHLQKVSLARRF 118
K E +L+ + P + + F I + +AF +++ +V + L
Sbjct: 137 KNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHS 196
Query: 119 ALVPLGPPLLAYSSKCKXXXXXXXXXXXXXXXRPYKAGESIVV-WCGPQPNSKLLINYGF 177
A V AY K KAGE + + + + N++L ++YGF
Sbjct: 197 AGVTTEDH--AYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGF 254
Query: 178 VDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLR 237
++ + + ++ DP + DK VA+ NG F + R +LPYLR
Sbjct: 255 IEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPP--GLLPYLR 312
Query: 238 LGYVSDTSE--MQSVI--SSLGPI-CPVSPCMERAVLDQLADYFKARLAGYPATLSEDEA 292
L + T ++S+ + G + VS E + + + K+ LAGY T+ +D
Sbjct: 313 LVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRE 372
Query: 293 MLTDYNLHPKKRVATQLVRMEKKML 317
L + NL + +A + EK +L
Sbjct: 373 -LKEGNLDSRLAIAVGIREGEKMVL 396
>pdb|1MZH|A Chain A, Qr15, An Aldolase
pdb|1MZH|B Chain B, Qr15, An Aldolase
Length = 225
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 47 SPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCV 106
+ T ++ E E ++ ELD VW + S F+ YD E EIF++ AV +
Sbjct: 67 NKTSVKVKEAVEAVRDGAQELDIVWNL--SAFKSEKYDFVVEELK-EIFRETPSAVHKVI 123
Query: 107 V 107
V
Sbjct: 124 V 124
>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T25|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 3- Hydroxyisoxazole-4-Carboxylic Acid
pdb|1T26|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 4- Hydroxy-1,2,5-Thiadiazole-3-Carboxylic Acid
pdb|1T2C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh
pdb|1T2D|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And Oxalate
pdb|2X8L|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Apo Structure
pdb|4B7U|A Chain A, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|B Chain B, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|C Chain C, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|D Chain D, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
Length = 322
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 215 VQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICP 259
VQ+ H H+G K I + LG V DTS ++ IS +CP
Sbjct: 133 VQLLHQHSGVPKNKI------IGLGGVLDTSRLKYYISQKLNVCP 171
>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedicarboxylic Acid
pdb|1U4S|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedisulphonic Acid
pdb|1U5A|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,5- Dihydroxy-2-Naphthoic Acid
pdb|1U5C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,7- Dihydroxynaphthalene-2-Carboxylic Acid And Nad+
pdb|2A94|A Chain A, Structure Of Plasmodium Falciparum Lactate Dehydrogenase
Complexed To Apadh
Length = 321
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 215 VQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICP 259
VQ+ H H+G K I + LG V DTS ++ IS +CP
Sbjct: 132 VQLLHQHSGVPKNKI------IGLGGVLDTSRLKYYISQKLNVCP 170
>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p
Mutant Complexed With Nadh And Oxamate
Length = 322
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 215 VQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICP 259
VQ+ H H+G K I + LG V DTS ++ IS +CP
Sbjct: 133 VQLLHQHSGVPKNKI------IGLGGVLDTSRLKYYISQKLNVCP 171
>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2-({4-
Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane-
1,1,2-Triol
Length = 323
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 215 VQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICP 259
VQ+ H H+G K I + LG V DTS ++ IS +CP
Sbjct: 132 VQLLHQHSGVPKNKI------IGLGGVLDTSRLKYYISQKLNVCP 170
>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase.
pdb|1LDG|A Chain A, Plasmodium Falciparum L-lactate Dehydrogenase Complexed
With Nadh And Oxamate
Length = 316
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 215 VQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICP 259
VQ+ H H+G K I + LG V DTS ++ IS +CP
Sbjct: 133 VQLLHQHSGVPKNKI------IGLGGVLDTSRLKYYISQKLNVCP 171
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 215 VQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICP 259
VQ+ H H+G K I + LG V DTS ++ IS +CP
Sbjct: 133 VQLLHQHSGVPKNKI------IGLGGVLDTSRLKYYISQKLNVCP 171
>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei
pdb|1OC4|B Chain B, Lactate Dehydrogenase From Plasmodium Berghei
Length = 322
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 215 VQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICP 259
VQ+ H H+G K I + LG V DTS ++ IS +CP
Sbjct: 133 VQLLHQHSGVPKNKI------VGLGGVLDTSRLKYYISQKLNVCP 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,525,001
Number of Sequences: 62578
Number of extensions: 358373
Number of successful extensions: 887
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 881
Number of HSP's gapped (non-prelim): 13
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)