Query 018962
Match_columns 348
No_of_seqs 150 out of 1163
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:32:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1337 N-methyltransferase [G 100.0 4E-35 8.6E-40 290.2 23.1 318 2-332 120-454 (472)
2 KOG1338 Uncharacterized conser 99.9 1.4E-24 3E-29 199.6 13.7 196 1-211 98-313 (466)
3 PF09273 Rubis-subs-bind: Rubi 99.8 1.5E-19 3.2E-24 148.1 13.7 122 193-317 1-128 (128)
4 PF00856 SET: SET domain; Int 99.0 1.3E-09 2.7E-14 91.3 7.2 49 116-164 111-162 (162)
5 smart00317 SET SET (Su(var)3-9 97.9 9.2E-06 2E-10 64.2 4.0 46 118-163 68-116 (116)
6 KOG1085 Predicted methyltransf 94.6 0.03 6.6E-07 50.9 3.2 48 126-173 336-386 (392)
7 KOG2589 Histone tail methylase 94.6 0.035 7.6E-07 52.2 3.6 59 118-188 192-252 (453)
8 KOG1080 Histone H3 (Lys4) meth 85.6 0.84 1.8E-05 49.3 3.9 42 123-164 939-983 (1005)
9 KOG4442 Clathrin coat binding 82.2 1.6 3.6E-05 44.6 4.1 41 125-165 195-238 (729)
10 KOG1079 Transcriptional repres 70.8 3.8 8.3E-05 41.9 3.1 40 126-165 668-710 (739)
11 COG2940 Proteins containing SE 68.3 2.7 5.7E-05 42.2 1.5 41 126-166 408-451 (480)
12 KOG1338 Uncharacterized conser 53.6 1.7 3.7E-05 41.7 -2.7 71 117-189 269-343 (466)
13 KOG2461 Transcription factor B 48.8 17 0.00036 35.6 3.1 35 142-176 121-155 (396)
14 COG1188 Ribosome-associated he 45.7 18 0.00039 28.0 2.3 56 88-166 7-62 (100)
15 KOG1083 Putative transcription 41.7 33 0.00073 37.3 4.2 23 144-166 1274-1296(1306)
16 PF02344 Myc-LZ: Myc leucine z 35.0 50 0.0011 19.7 2.5 26 310-335 6-31 (32)
17 TIGR02059 swm_rep_I cyanobacte 31.9 76 0.0017 24.5 3.7 29 139-167 71-99 (101)
18 PF15188 CCDC-167: Coiled-coil 30.5 83 0.0018 23.6 3.7 42 288-332 22-63 (85)
19 KOG3429 Predicted peptidyl-tRN 30.2 2E+02 0.0044 24.3 6.3 52 264-320 111-163 (172)
20 KOG1082 Histone H3 (Lys9) meth 27.8 48 0.001 31.9 2.7 24 145-168 301-324 (364)
21 KOG0884 Similar to cyclophilin 26.0 1.2E+02 0.0025 24.4 3.9 48 119-167 49-109 (161)
No 1
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=100.00 E-value=4e-35 Score=290.20 Aligned_cols=318 Identities=33% Similarity=0.429 Sum_probs=252.0
Q ss_pred cccccCCCCCChHhHHhcCcccCCCCcccCCCCCCCHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHhhccccccC
Q 018962 2 YEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQY 81 (348)
Q Consensus 2 ~Er~~g~~S~w~pY~~~LP~~~~~~~~~~~~pl~w~~~el~~L~gs~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (348)
+|...+..|+|+||+..||. .+++|++|...++..|.+++.+..+..+++.++..+..+.+++......+..+
T Consensus 120 ~~~~~~~~s~w~~~i~~l~~-------~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (472)
T KOG1337|consen 120 LEWAHGEISKWKPYISTLPS-------QYNSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAELLEVLQSHPSLFGSD 192 (472)
T ss_pred Hhhhccccccchhhhhhchh-------hcCCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHHHHHHHhcccccccc
Confidence 56777888999999999999 57999999999999999999999999998888887777665443333333322
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhceeecccc------ccccceeeeecCCCCCCCCCccceeEeeeCCeEEEEEeccCCC
Q 018962 82 PYDIPTEAFTFEIFKQAFVAVQSCVVHLQKV------SLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKA 155 (348)
Q Consensus 82 ~~~~~~~~~t~~~f~wA~~~v~SRa~~~~~~------~~~~~~~LvP~~D~~Nh~~~~~~~~~~~~~~~~~~~a~~~~~~ 155 (348)
.. +.+|+++|.||+++|.||+|+.+.. +.....+|+|++||.||......+.++..++.+.+++.+++++
T Consensus 193 ~~----d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~~~~~~~~~d~~~~l~~~~~v~~ 268 (472)
T KOG1337|consen 193 LF----DTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEVIKAGYNQEDEAVELVAERDVSA 268 (472)
T ss_pred cc----CccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchhccccccCCCCcEEEEEeeeecC
Confidence 22 2389999999999999999987532 1124579999999999754444666677777999999999999
Q ss_pred CCeEEeccCCCCcHHHhHhcCcccCCCCCCeEEEEeecCCCCCChHHHHHHHHHcCCCccceEEEEeCCcccchhchHHH
Q 018962 156 GESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPY 235 (348)
Q Consensus 156 Geev~~~YG~~sN~~lL~~YGFv~~~Np~D~v~l~~~~~~~d~~~~~K~~~l~~~g~~~~~~f~l~~~~~~~~~~~ll~~ 235 (348)
|+||||+||+++|++||++|||+.++||+|+|.+.+.+...++.+..|.+.+..++......|.+....... .+++..
T Consensus 269 geevfi~YG~~~N~eLL~~YGFv~~~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 346 (472)
T KOG1337|consen 269 GEEVFINYGPKSNAELLLHYGFVEEDNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSILLTGEPV--SEMLLL 346 (472)
T ss_pred CCeEEEecCCCchHHHHHhcCCCCCCCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEEeecCCch--hhhhhh
Confidence 999999999999999999999999999999999999999999999999999999998888888876654322 233333
Q ss_pred HHhhcCCC---hHHHHHHHH----h---cCCCCCCChhhHHHHHHHHHHH-HHHHHhcCCCCHHHHHHhhccCCCChhHH
Q 018962 236 LRLGYVSD---TSEMQSVIS----S---LGPICPVSPCMERAVLDQLADY-FKARLAGYPATLSEDEAMLTDYNLHPKKR 304 (348)
Q Consensus 236 lRv~~~~~---~~el~~~~~----~---~~~~~~~s~~~E~~~~~~L~~~-l~~~L~~y~tt~eeD~~~L~~~~~s~r~~ 304 (348)
.++..+.+ ..++..... . .....+++..+|...+..+... +...+..+.+++++++..+.+..++.+..
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~vl~~~~l~~~~~ 426 (472)
T KOG1337|consen 347 FLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDESVLKDNILSKLLE 426 (472)
T ss_pred hhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhhhhhcccccchhhh
Confidence 33222221 112221111 1 1245677888999999999998 88888899999999999998877888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018962 305 VATQLVRMEKKMLNACLQVTADMIMLLP 332 (348)
Q Consensus 305 ~A~~~R~~eK~IL~~~l~~l~~~~~~l~ 332 (348)
++..++..+++||.+.+..+..+...++
T Consensus 427 ~~~k~~~~~~~iL~~~~~~~~~~~~~l~ 454 (472)
T KOG1337|consen 427 LLEKLRTLEKRILEKSLKLLRSRLKLLH 454 (472)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999998886555554
No 2
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.92 E-value=1.4e-24 Score=199.63 Aligned_cols=196 Identities=20% Similarity=0.265 Sum_probs=152.5
Q ss_pred CcccccCCCCCChHhHHhcCcccCCCCcccCCCCCCCHHHHhhccCCccHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 018962 1 MYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQ 80 (348)
Q Consensus 1 ~~Er~~g~~S~w~pY~~~LP~~~~~~~~~~~~pl~w~~~el~~L~gs~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (348)
+||+..+.+|+|+||++.+|++. .+++|+||+++|+..|..+...+.+.+....+.+.|....+.+ .+.
T Consensus 98 l~E~~~pq~SrWrPYfs~wp~p~-----rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~~~~i~~i~pf------~~~ 166 (466)
T KOG1338|consen 98 LREKKMPQKSRWRPYFSRWPQPA-----RMHSPIFWDENELSMLLCSTVLEETVKDKAEIEKDFIFVIQPF------KQH 166 (466)
T ss_pred HHHhhcccccccccHHHhCCChh-----hcCCCccCCchHHHHHhhcccchhhHhHHHHHHHHHHHHHHHH------HHh
Confidence 46776566699999999999997 7999999999999966555566668889999999999887753 344
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhhceeecccc-----------ccccceeeeecCCCCCCCCCccceeEeeeCCeEEEEE
Q 018962 81 YPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKV-----------SLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVV 149 (348)
Q Consensus 81 ~~~~~~~~~~t~~~f~wA~~~v~SRa~~~~~~-----------~~~~~~~LvP~~D~~Nh~~~~~~~~~~~~~~~~~~~a 149 (348)
+|..+ +.+++++|..+++++.+.+|.+.-. ......+|+|.+||+||++..|++.+.++++|+.|+|
T Consensus 167 ~p~vf--s~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~nanl~y~~NcL~mva 244 (466)
T KOG1338|consen 167 CPIVF--SRPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANANLRYEDNCLEMVA 244 (466)
T ss_pred Ccchh--cccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhcccceeccCcceeeee
Confidence 66543 3489999999999999999987411 1123579999999999888889999999999999999
Q ss_pred eccCCCCCeEEeccCCCCcHHHhHhcCcccCCCC---------CCeEEEEeecCCCCCChHHHHHHHHHcC
Q 018962 150 DRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNP---------YDRLVVEAALNTEDPQYQDKRMVAQRNG 211 (348)
Q Consensus 150 ~~~~~~Geev~~~YG~~sN~~lL~~YGFv~~~Np---------~D~v~l~~~~~~~d~~~~~K~~~l~~~g 211 (348)
.++|.+|+||+++||.++|. |++||.+.-.-. +|-+.+-.+.+.+++....|..+++.++
T Consensus 245 ~r~iekgdev~n~dg~~p~~--l~~l~ka~c~gihm~~g~~~l~niv~~l~D~~~d~tm~~~R~il~ql~n 313 (466)
T KOG1338|consen 245 DRNIEKGDEVDNSDGLKPMG--LLKLTKALCVGIHMVWGILKLYNIVQILMDVPNDDTMRNMRLILLQLHN 313 (466)
T ss_pred cCCCCCccccccccccCcch--hhhhhhhccceeeeecceeecchHHHHHhcCCCcchHHHHHHHHHHhcc
Confidence 99999999999999999888 888887764321 2333333455566666666655444433
No 3
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=99.82 E-value=1.5e-19 Score=148.06 Aligned_cols=122 Identities=32% Similarity=0.483 Sum_probs=104.6
Q ss_pred cCCCCCChHHHHHHHHHcCCCccceEEEEeCCcccchhchHHHHHhhcCCChHHHHHHHHhcC------CCCCCChhhHH
Q 018962 193 LNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLG------PICPVSPCMER 266 (348)
Q Consensus 193 ~~~~d~~~~~K~~~l~~~g~~~~~~f~l~~~~~~~~~~~ll~~lRv~~~~~~~el~~~~~~~~------~~~~~s~~~E~ 266 (348)
++++||+++.|.++|+.+|+.....|.+..++. ++.++++++||++|+ .+++..+..... ...++|.+||.
T Consensus 1 l~~~D~l~~~K~~lL~~~gl~~~~~f~l~~~~~--~~~~Ll~~lRv~~~~-~~e~~~~~~~~~~~~~~~~~~~ls~~nE~ 77 (128)
T PF09273_consen 1 LSPSDPLFEEKKQLLEEHGLSGDQTFDLRADGP--LPPELLAALRVLLMT-EEELRALKSLADSSEWSDRSEPLSPENEI 77 (128)
T ss_dssp --TTSTTHHHHHHHHHHTTS-SEEEEEEECCSS--SHHHHHHHHHHHHSC-HHHHHHHHHCGTTTHCCHCCC-SBHHHHH
T ss_pred CCchhhhHHHHHHHHHHCCCCCCceeeeeCCCC--CCHHHHHHHHHHHcC-hHHHHHHHHhhcccccccccCCCchhhHH
Confidence 357899999999999999998888899988864 789999999999995 678877765432 24678999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHhhccCCCChhHHHHHHHHHHHHHHH
Q 018962 267 AVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKML 317 (348)
Q Consensus 267 ~~~~~L~~~l~~~L~~y~tt~eeD~~~L~~~~~s~r~~~A~~~R~~eK~IL 317 (348)
+++++|...|..+|+.|+||+++|+++|++...+.+.++|++||++||+||
T Consensus 78 ~~l~~L~~~~~~~L~~y~TtleeD~~~L~~~~~~~~~~~A~~~R~~EK~IL 128 (128)
T PF09273_consen 78 AALQFLIDLCEARLSAYPTTLEEDEELLQSNDLSSRRRMALQVRLGEKRIL 128 (128)
T ss_dssp HHHHHHHHHHHHHHTTSSS-HHHHHHHCHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHhcCCCcHHHHHHHHHHHHhHhcC
Confidence 999999999999999999999999999999877778999999999999998
No 4
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=98.98 E-value=1.3e-09 Score=91.30 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=39.0
Q ss_pred cceeeeecCCCCCCCC-CccceeEe--eeCCeEEEEEeccCCCCCeEEeccC
Q 018962 116 RRFALVPLGPPLLAYS-SKCKAMLA--AVDDAVQLVVDRPYKAGESIVVWCG 164 (348)
Q Consensus 116 ~~~~LvP~~D~~Nh~~-~~~~~~~~--~~~~~~~~~a~~~~~~Geev~~~YG 164 (348)
...+|+|++||+||.+ ++|.+.+. ..++.++++|.++|++|||||++||
T Consensus 111 ~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 111 DGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred cccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 4589999999999866 34555444 2588999999999999999999999
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=97.94 E-value=9.2e-06 Score=64.23 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=35.5
Q ss_pred eeeeecCCCCCCCC-CccceeEeeeCC--eEEEEEeccCCCCCeEEecc
Q 018962 118 FALVPLGPPLLAYS-SKCKAMLAAVDD--AVQLVVDRPYKAGESIVVWC 163 (348)
Q Consensus 118 ~~LvP~~D~~Nh~~-~~~~~~~~~~~~--~~~~~a~~~~~~Geev~~~Y 163 (348)
..+.|+++++||.+ +++...+...++ .+.++|.|+|++||||+++|
T Consensus 68 ~~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 68 RRKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred CccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 35899999999865 334444444444 49999999999999999998
No 6
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=94.59 E-value=0.03 Score=50.86 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=35.3
Q ss_pred CCCCC-CCccceeEee--eCCeEEEEEeccCCCCCeEEeccCCCCcHHHhH
Q 018962 126 PLLAY-SSKCKAMLAA--VDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLI 173 (348)
Q Consensus 126 ~~Nh~-~~~~~~~~~~--~~~~~~~~a~~~~~~Geev~~~YG~~sN~~lL~ 173 (348)
++||. ++++.+.+-. ..-.++++|.++|.+|||+...||++|-.-++.
T Consensus 336 LINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDRSkesi~~ 386 (392)
T KOG1085|consen 336 LINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDRSKESIAK 386 (392)
T ss_pred hhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhccccchhHHhh
Confidence 67764 3445544433 344689999999999999999999988776554
No 7
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=94.57 E-value=0.035 Score=52.15 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=44.0
Q ss_pred eeeeecCCCCCCCCCccceeEeeeC-CeEEEEEeccCCCCCeEEeccCCCCcHHHhHhcCcccCCCCC-CeEE
Q 018962 118 FALVPLGPPLLAYSSKCKAMLAAVD-DAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPY-DRLV 188 (348)
Q Consensus 118 ~~LvP~~D~~Nh~~~~~~~~~~~~~-~~~~~~a~~~~~~Geev~~~YG~~sN~~lL~~YGFv~~~Np~-D~v~ 188 (348)
..|=|-+ ++||++ .+|..|...+ +...+++.|||++||||+--||. ||.-++|.+ .|+.
T Consensus 192 LwLGPaa-fINHDC-rpnCkFvs~g~~tacvkvlRDIePGeEITcFYgs----------~fFG~~N~~CeC~T 252 (453)
T KOG2589|consen 192 LWLGPAA-FINHDC-RPNCKFVSTGRDTACVKVLRDIEPGEEITCFYGS----------GFFGENNEECECVT 252 (453)
T ss_pred heeccHH-hhcCCC-CCCceeecCCCceeeeehhhcCCCCceeEEeecc----------cccCCCCceeEEee
Confidence 3577777 688755 3455565555 78999999999999999999998 777777763 4443
No 8
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=85.56 E-value=0.84 Score=49.28 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=32.3
Q ss_pred cCCCCCCCC-CccceeEeeeC--CeEEEEEeccCCCCCeEEeccC
Q 018962 123 LGPPLLAYS-SKCKAMLAAVD--DAVQLVVDRPYKAGESIVVWCG 164 (348)
Q Consensus 123 ~~D~~Nh~~-~~~~~~~~~~~--~~~~~~a~~~~~~Geev~~~YG 164 (348)
++-++||.+ ++|.+.....+ ..++++|.++|.+||||+.+|-
T Consensus 939 iAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYk 983 (1005)
T KOG1080|consen 939 IARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYK 983 (1005)
T ss_pred hhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecc
Confidence 344789876 57877665443 3688999999999999998884
No 9
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.17 E-value=1.6 Score=44.63 Aligned_cols=41 Identities=17% Similarity=0.087 Sum_probs=28.3
Q ss_pred CCCCCCC-CccceeEeeeCCe--EEEEEeccCCCCCeEEeccCC
Q 018962 125 PPLLAYS-SKCKAMLAAVDDA--VQLVVDRPYKAGESIVVWCGP 165 (348)
Q Consensus 125 D~~Nh~~-~~~~~~~~~~~~~--~~~~a~~~~~~Geev~~~YG~ 165 (348)
-++||.+ |+|.+.-....|. +-+-+.+.|++||||+..|+=
T Consensus 195 RFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf 238 (729)
T KOG4442|consen 195 RFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQF 238 (729)
T ss_pred HhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEeccc
Confidence 3679876 4555432233343 556789999999999999963
No 10
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=70.76 E-value=3.8 Score=41.86 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=28.4
Q ss_pred CCCCCC-CccceeE--eeeCCeEEEEEeccCCCCCeEEeccCC
Q 018962 126 PLLAYS-SKCKAML--AAVDDAVQLVVDRPYKAGESIVVWCGP 165 (348)
Q Consensus 126 ~~Nh~~-~~~~~~~--~~~~~~~~~~a~~~~~~Geev~~~YG~ 165 (348)
+.||.. ++|.+.. -..++.+-+.|.|.|.+|||+|..|+=
T Consensus 668 FANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrY 710 (739)
T KOG1079|consen 668 FANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRY 710 (739)
T ss_pred hccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeecc
Confidence 456542 3444333 335667889999999999999999964
No 11
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=68.33 E-value=2.7 Score=42.21 Aligned_cols=41 Identities=24% Similarity=0.339 Sum_probs=28.7
Q ss_pred CCCCCC-CccceeEeeeCC--eEEEEEeccCCCCCeEEeccCCC
Q 018962 126 PLLAYS-SKCKAMLAAVDD--AVQLVVDRPYKAGESIVVWCGPQ 166 (348)
Q Consensus 126 ~~Nh~~-~~~~~~~~~~~~--~~~~~a~~~~~~Geev~~~YG~~ 166 (348)
++||.+ +++.+......+ .+.+.+.++|++||||.++||..
T Consensus 408 ~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~ 451 (480)
T COG2940 408 FINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPS 451 (480)
T ss_pred eeecCCCCCcceecccccccceeeecccccchhhhhhccccccc
Confidence 678754 234443333333 67788999999999999999874
No 12
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.58 E-value=1.7 Score=41.65 Aligned_cols=71 Identities=13% Similarity=-0.057 Sum_probs=53.8
Q ss_pred ceeeeecCCCCCCCCCcccee--EeeeCCeEEEEEeccCCCCCeEEeccCCCCcHHHhHhcC-cccC-CCCCCeEEE
Q 018962 117 RFALVPLGPPLLAYSSKCKAM--LAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYG-FVDE-DNPYDRLVV 189 (348)
Q Consensus 117 ~~~LvP~~D~~Nh~~~~~~~~--~~~~~~~~~~~a~~~~~~Geev~~~YG~~sN~~lL~~YG-Fv~~-~Np~D~v~l 189 (348)
..+|+|+.+|++....-++.. +-...+..+|++.|.+ |.|..++||...+.++...|| |+.. .-|++.+.+
T Consensus 269 ~ka~c~gihm~~g~~~l~niv~~l~D~~~d~tm~~~R~i--l~ql~nt~teld~~e~~~syd~ftkkE~~p~~g~lv 343 (466)
T KOG1338|consen 269 TKALCVGIHMVWGILKLYNIVQILMDVPNDDTMRNMRLI--LLQLHNTRTELDINEFHSSYDTFTKKEVKPAIGKLV 343 (466)
T ss_pred hhhccceeeeecceeecchHHHHHhcCCCcchHHHHHHH--HHHhccchhhhhhHHHHHhhhhhhhccccccceeee
Confidence 468999999987533333332 3345567788888888 999999999999999999999 5543 378887776
No 13
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=48.79 E-value=17 Score=35.55 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=31.1
Q ss_pred CCeEEEEEeccCCCCCeEEeccCCCCcHHHhHhcC
Q 018962 142 DDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYG 176 (348)
Q Consensus 142 ~~~~~~~a~~~~~~Geev~~~YG~~sN~~lL~~YG 176 (348)
...+-++|.|+|.+|||+.+.||.--+.+|...+|
T Consensus 121 ~~~Ifyrt~r~I~p~eELlVWY~~e~~~~L~~~~~ 155 (396)
T KOG2461|consen 121 GENIFYRTIRDIRPNEELLVWYGSEYAEELAYGHG 155 (396)
T ss_pred cCceEEEecccCCCCCeEEEEeccchHhHhcccCC
Confidence 46678899999999999999999988888888777
No 14
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=45.70 E-value=18 Score=27.97 Aligned_cols=56 Identities=7% Similarity=0.099 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHhhhceeeccccccccceeeeecCCCCCCCCCccceeEeeeCCeEEEEEeccCCCCCeEEeccCCC
Q 018962 88 EAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQ 166 (348)
Q Consensus 88 ~~~t~~~f~wA~~~v~SRa~~~~~~~~~~~~~LvP~~D~~Nh~~~~~~~~~~~~~~~~~~~a~~~~~~Geev~~~YG~~ 166 (348)
...-+|.|+|+.-++=+|+.-- +|+. ...+.++ | -..++.+.++.|++|.+.||..
T Consensus 7 ~~mRLDKwL~~aR~~KrRslAk---------------~~~~----~GrV~vN---G-~~aKpS~~VK~GD~l~i~~~~~ 62 (100)
T COG1188 7 DRMRLDKWLWAARFIKRRSLAK---------------EMIE----GGRVKVN---G-QRAKPSKEVKVGDILTIRFGNK 62 (100)
T ss_pred cceehHHHHHHHHHhhhHHHHH---------------HHHH----CCeEEEC---C-EEcccccccCCCCEEEEEeCCc
Confidence 3457889999999999997643 2221 1122221 1 1237888999999999999983
No 15
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=41.71 E-value=33 Score=37.27 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=19.7
Q ss_pred eEEEEEeccCCCCCeEEeccCCC
Q 018962 144 AVQLVVDRPYKAGESIVVWCGPQ 166 (348)
Q Consensus 144 ~~~~~a~~~~~~Geev~~~YG~~ 166 (348)
.+.+.|.+||.+||||+..|.-+
T Consensus 1274 Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1274 RVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred eeeeeecCCCCCCceEEEecccc
Confidence 36678999999999999999654
No 16
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=35.02 E-value=50 Score=19.72 Aligned_cols=26 Identities=15% Similarity=0.064 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC
Q 018962 310 VRMEKKMLNACLQVTADMIMLLPDVT 335 (348)
Q Consensus 310 R~~eK~IL~~~l~~l~~~~~~l~~~~ 335 (348)
-+.||..|+.-.+.|+..++.|+.++
T Consensus 6 L~sekeqLrrr~eqLK~kLeqlrnS~ 31 (32)
T PF02344_consen 6 LISEKEQLRRRREQLKHKLEQLRNSC 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 36788999999999999998887664
No 17
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=31.89 E-value=76 Score=24.54 Aligned_cols=29 Identities=7% Similarity=0.242 Sum_probs=23.5
Q ss_pred eeeCCeEEEEEeccCCCCCeEEeccCCCC
Q 018962 139 AAVDDAVQLVVDRPYKAGESIVVWCGPQP 167 (348)
Q Consensus 139 ~~~~~~~~~~a~~~~~~Geev~~~YG~~s 167 (348)
+.....+.+.-.+.|..|++|.++|-+.+
T Consensus 71 ~~s~ktVTLTL~~~V~~Gq~VTVsYt~ps 99 (101)
T TIGR02059 71 GGSNTTITLTLAQVVEDGDEVTLSYTKNS 99 (101)
T ss_pred cCcccEEEEEecccccCCCEEEEEeeCCC
Confidence 33455789999999999999999996543
No 18
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=30.49 E-value=83 Score=23.61 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=27.3
Q ss_pred HHHHHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 018962 288 SEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLP 332 (348)
Q Consensus 288 eeD~~~L~~~~~s~r~~~A~~~R~~eK~IL~~~l~~l~~~~~~l~ 332 (348)
+.-+..|....+|+..|-.+. .|+..|...+..-++.++.|+
T Consensus 22 e~ve~rL~~~eLs~e~R~~lE---~E~~~l~~~l~~~E~eL~~Lr 63 (85)
T PF15188_consen 22 EAVESRLRRRELSPEARRSLE---KELNELKEKLENNEKELKLLR 63 (85)
T ss_pred HHHHHHHcccCCChHHHHHHH---HHHHHHHHHhhccHHHHHHHH
Confidence 444445655566654444433 677888888888888887776
No 19
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=30.16 E-value=2e+02 Score=24.34 Aligned_cols=52 Identities=21% Similarity=0.143 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHhcCC-CCHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHH
Q 018962 264 MERAVLDQLADYFKARLAGYP-ATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNAC 320 (348)
Q Consensus 264 ~E~~~~~~L~~~l~~~L~~y~-tt~eeD~~~L~~~~~s~r~~~A~~~R~~eK~IL~~~ 320 (348)
|-.++++.|.+++...-+.-+ .+-+||.+.+. .+..-|.+=|+.||++..+.
T Consensus 111 NiaDcleKlr~~I~~~~~~~~~~~teE~~kk~r-----~~~e~an~eRL~~Kk~~s~k 163 (172)
T KOG3429|consen 111 NIADCLEKLRDIIRAAEQTPPVDPTEETIKKIR-----IRKEKANRERLQEKKVHSDK 163 (172)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----HHHHHHHHHHHHHHHhhhHH
Confidence 445778888888887776544 34467766553 46778888899999988764
No 20
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=27.77 E-value=48 Score=31.92 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.6
Q ss_pred EEEEEeccCCCCCeEEeccCCCCc
Q 018962 145 VQLVVDRPYKAGESIVVWCGPQPN 168 (348)
Q Consensus 145 ~~~~a~~~~~~Geev~~~YG~~sN 168 (348)
+.+.|.++|.+|+|++..||...+
T Consensus 301 i~ffa~~~I~p~~ELT~dYg~~~~ 324 (364)
T KOG1082|consen 301 IGFFALRDISPGEELTLDYGKAYK 324 (364)
T ss_pred eeeeeccccCCCcccchhhccccc
Confidence 567789999999999999998543
No 21
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.02 E-value=1.2e+02 Score=24.44 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=33.1
Q ss_pred eeeecCCCCCCCCCccceeEee-------------eCCeEEEEEeccCCCCCeEEeccCCCC
Q 018962 119 ALVPLGPPLLAYSSKCKAMLAA-------------VDDAVQLVVDRPYKAGESIVVWCGPQP 167 (348)
Q Consensus 119 ~LvP~~D~~Nh~~~~~~~~~~~-------------~~~~~~~~a~~~~~~Geev~~~YG~~s 167 (348)
.||--.|. -|.....+..|-. ..+++.|...-+-.-|.|.||+||..+
T Consensus 49 f~v~~~~~-~~tgrgg~siwg~~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~ 109 (161)
T KOG0884|consen 49 FMVQTGDP-THTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQP 109 (161)
T ss_pred cEEEeCCC-CCCCCCCccccCCcchHHHHHHHhhccceeEEcccCCCCCCCceEEEEecCCC
Confidence 57777774 3544445555521 246677777788889999999999854
Done!