RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 018964
(348 letters)
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Length = 334
Score = 288 bits (739), Expect = 5e-97
Identities = 177/288 (61%), Positives = 226/288 (78%), Gaps = 2/288 (0%)
Query: 21 EQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLL-DSE 79
E E +EP+L E +R +FPI+Y ++W+ YK+A+ASFWTAEE+DLS+D+ W + ++E
Sbjct: 46 EMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENE 105
Query: 80 KHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETY 139
+ FIS VLAFFAASDGIV ENL F ++QIPEA++FYGFQI +ENIHSE YSLL++TY
Sbjct: 106 RFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTY 165
Query: 140 IKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDS-FAERLVGFACVEGIFFSGSFCAI 198
IKD KE LFNAI IP + +KA+WAL WI +D+ F ERLV FA +EG+FFSGSF +I
Sbjct: 166 IKDPKESEFLFNAIHTIPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASI 225
Query: 199 FWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQF 258
FWLKKRG+MPGLTFSNELI RDEGLH DFACLL++ L+ + V +V EAVEIE ++
Sbjct: 226 FWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRY 285
Query: 259 VCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPFDWME 306
+ALP AL+GMN+ LM+QY++FVADRLLVA G ++ Y VENPFD+ME
Sbjct: 286 FLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKVENPFDFME 333
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 259 bits (662), Expect = 4e-86
Identities = 186/280 (66%), Positives = 223/280 (79%), Gaps = 1/280 (0%)
Query: 24 DQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFI 83
+ EP+L E +RF +FPI Y +W+MYKKA+ASFWTAEEVDLS+D+QHWE L E+HFI
Sbjct: 2 EDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFI 61
Query: 84 SHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDS 143
SHVLAFFAASDGIV ENL RF ++Q+ EAR FYGFQIAMENIHSEMYSLL++TYIKD
Sbjct: 62 SHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDP 121
Query: 144 KEKHRLFNAIENIPCVAQKAKWALDWIHSSDS-FAERLVGFACVEGIFFSGSFCAIFWLK 202
KE+ LFNAIE +PCV +KA WAL WI ++ + ER+V FA VEGIFFSGSF +IFWLK
Sbjct: 122 KEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLK 181
Query: 203 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQFVCEA 262
KRGLMPGLTFSNELISRDEGLHCDFACL++ L + Q+V ++ AV IE +F+ EA
Sbjct: 182 KRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFLTEA 241
Query: 263 LPCALIGMNSSLMSQYIKFVADRLLVALGCQRKYNVENPF 302
LP LIGMN +LM QYI+FVADRL++ LG + + VENPF
Sbjct: 242 LPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRVENPF 281
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia
trachomatis [TaxId: 813]}
Length = 317
Score = 237 bits (605), Expect = 5e-77
Identities = 78/320 (24%), Positives = 146/320 (45%), Gaps = 26/320 (8%)
Query: 9 ENEVNQREQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQD 68
+ ++ +Q + + Q + PI+YK WE Y A+ W E+ + +D
Sbjct: 1 QADILDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKD 60
Query: 69 VQHW--ERLLDSEKHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMEN 126
++ W +RL + E+ I L FF+ ++ +V N+ + PEAR + Q E
Sbjct: 61 IELWKSDRLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEA 120
Query: 127 IHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVAQKAKWAL-------------DWIHSS 173
+H+ + + E+ D KE +FNA + K + + D +
Sbjct: 121 VHTHTFLYICESLGLDEKE---IFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGL 177
Query: 174 DSFAERLVGFACVE-GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 232
F + LVG+ + GIFF F I ++ M G+ + I RDE +H +F L
Sbjct: 178 QEFVKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLI 237
Query: 233 SLLRKRLHW-------QKVHHMVHEAVEIETQFVCEALPCALIGMNSSLMSQYIKFVADR 285
+ +++ Q++ ++ AV++E ++ + LP ++G+ +S+ Y++ +ADR
Sbjct: 238 NGIKEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADR 297
Query: 286 LLVALGCQRKYNVENPFDWM 305
L +G + Y+ +NPF WM
Sbjct: 298 RLERIGLKPIYHTKNPFPWM 317
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y4 [TaxId: 4932]}
Length = 285
Score = 233 bits (594), Expect = 9e-76
Identities = 121/278 (43%), Positives = 184/278 (66%), Gaps = 2/278 (0%)
Query: 20 QEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSE 79
+E E E +LME ++RF MFPI+Y ++W YKK +ASFWTAEE++L++D + +++L D +
Sbjct: 9 KEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQKLTDDQ 68
Query: 80 KHFISHVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETY 139
K +I ++LA +SD +V + L F +Q PE ++FYGFQI MENI+SE+YS++++ +
Sbjct: 69 KTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAF 128
Query: 140 IKDSKEKHRLFNAIENIPCVAQKAKWALDWIHSSDS-FAERLVGFACVEGIFFSGSFCAI 198
KD K LF I N+P V KA + WI + DS +AERLV FA EGIF +G++ ++
Sbjct: 129 FKDPKN-IPLFKEIANLPEVKHKAAFIERWISNDDSLYAERLVAFAAKEGIFQAGNYASM 187
Query: 199 FWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKRLHWQKVHHMVHEAVEIETQF 258
FWL + +MPGL +N I RD G + DF+CLL++ LR + + + + ++ EAVEIE ++
Sbjct: 188 FWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEKIITEAVEIEKEY 247
Query: 259 VCEALPCALIGMNSSLMSQYIKFVADRLLVALGCQRKY 296
+LP GM+ + YI+FVAD LL G ++ Y
Sbjct: 248 YSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYY 285
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli
[TaxId: 562]}
Length = 339
Score = 222 bits (566), Expect = 6e-71
Identities = 68/325 (20%), Positives = 120/325 (36%), Gaps = 47/325 (14%)
Query: 26 EPILMEQNQRFCMF-PIRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFIS 84
EP+ Q + +Y ++ +K + FW EEVD+S+D ++ L + EKH
Sbjct: 15 EPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFI 74
Query: 85 HVLAFFAASDGIVLENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSK 144
L + D I + L I IPE + E IHS Y+ ++ + D
Sbjct: 75 SNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVND-- 132
Query: 145 EKHRLFNAIENIPCVAQKAKWALDWIHSSD------------------------------ 174
+F+ I + ++A+ +
Sbjct: 133 -PSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKK 191
Query: 175 SFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL 234
L+ +E I F SF F +R LM G LI+RDE LH + +L
Sbjct: 192 KLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNL 251
Query: 235 LRKRL-----------HWQKVHHMVHEAVEIETQFVCEAL-PCALIGMNSSLMSQYIKFV 282
LR Q+ + + +A + E + ++IG+N ++ QY++++
Sbjct: 252 LRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYI 311
Query: 283 ADRLLVALGCQRKYNV-ENPFDWME 306
+ + A+G + NP W+
Sbjct: 312 TNIRMQAVGLDLPFQTRSNPIPWIN 336
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella
typhimurium [TaxId: 90371]}
Length = 283
Score = 196 bits (498), Expect = 2e-61
Identities = 60/278 (21%), Positives = 109/278 (39%), Gaps = 18/278 (6%)
Query: 41 IRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLEN 100
I+ + E++ + ++FW E+V LS D+ W+ L +E+ V D I
Sbjct: 9 IQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIA 68
Query: 101 LAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVA 160
A + D P A ME +H+ YS + T + KE + E P +
Sbjct: 69 GAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQT-KEVDAAYAWSEENPPLQ 127
Query: 161 QKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRD 220
+KA+ L SD ++ + +E F F + RG + LI RD
Sbjct: 128 RKAQIILAHYV-SDEPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRD 186
Query: 221 EGLHCDFACLLYSLLRKRLHWQKVHH-------MVHEAVEIETQFVCEALPCALIGMNSS 273
E +H + Y + ++L + ++ E + E ++ EAL +N
Sbjct: 187 EAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRY-TEALYAETGWVND- 244
Query: 274 LMSQYIKFVADRLLVALGCQRKYNVE----NP--FDWM 305
+ ++ + A++ L+ LG + + E NP +
Sbjct: 245 -VKAFLCYNANKALMNLGYEALFPPEMADVNPAILAAL 281
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2
{Corynebacterium ammoniagenes [TaxId: 1697]}
Length = 284
Score = 194 bits (493), Expect = 1e-60
Identities = 52/266 (19%), Positives = 105/266 (39%), Gaps = 12/266 (4%)
Query: 41 IRYKQVWEMYKKAQASFWTAEEVDLSQDVQHWERLLDSEKHFISHVLAFFAASDGIVLEN 100
I ++ E++ + +FW E++ +S D+Q W ++ E+ V D I
Sbjct: 11 IPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTV 70
Query: 101 LAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRLFNAIENIPCVA 160
A L D + A Y ME++H++ YS + T + + F E +
Sbjct: 71 GAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLAST-PQINEAFRWSEENENLQ 129
Query: 161 QKAKWALDWIHSSDSFAERLVGFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRD 220
+KAK + + + D ++ V +E F F +L R + LI RD
Sbjct: 130 RKAKIIMSYYN-GDDPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRD 188
Query: 221 EGLHCDFACLLYSLLRKRLHW-------QKVHHMVHEAVEIETQFVCEALPCALIGMNSS 273
E +H + Y K+L ++++ E E ++ + +G
Sbjct: 189 ESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIYDD--LGWTED 246
Query: 274 LMSQYIKFVADRLLVALGCQRKYNVE 299
+ +++++ A++ L LG + + +
Sbjct: 247 -VKRFLRYNANKALNNLGYEGLFPTD 271
>d1wuba_ b.61.6.1 (A:) Polyisoprenoid-binding protein TTHA0802
(TT1927B) {Thermus thermophilus [TaxId: 274]}
Length = 176
Score = 27.7 bits (61), Expect = 1.3
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 164 KWALDWIHSSDSFAERLVGFACVEGIF--FSGSF 195
KW LD H+S F R +G A V G SGS
Sbjct: 2 KWNLDPSHTSIDFKVRHMGIASVRGSLKVLSGSV 35
>d1k3va_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
protein {Porcine parvovirus [TaxId: 10796]}
Length = 542
Score = 28.4 bits (63), Expect = 1.4
Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 11/85 (12%)
Query: 10 NEVNQREQGEQEQEDQEPILMEQNQRFCMFPIRYKQVWEMYKKAQASFWTAEEVDLSQDV 69
+ ++ + L+ + PI K + ++ ++ + V
Sbjct: 370 KQQFNQQAPLNLENTNNGTLLPSD------PIGGKSN-MHFMNTLNTYGPLTALNNTAPV 422
Query: 70 ----QHWERLLDSEKHFISHVLAFF 90
Q W++ LD++ HV A F
Sbjct: 423 FPNGQIWDKELDTDLKPRLHVTAPF 447
>d1u8va1 a.29.3.1 (A:276-490) 4-hydroxybutyryl-CoA dehydratase AbfD,
C-terminal domain {Clostridium aminobutyricum [TaxId:
33953]}
Length = 215
Score = 27.5 bits (61), Expect = 1.9
Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 98 LENLAARFLNDIQIPEARAFYGFQIAMENIHSEMYSLLLETYIK-----DSKEKHRLFNA 152
E++A + + +P F + + E + ++E+ R+
Sbjct: 109 AEDIAGGLM--VTMPSEADFKSETVVGRD--GETIGDFCNKFFAAAPTCTTEERMRVLRF 164
Query: 153 IENIPCVAQKAKWALDWIH-SSDSFAERLV 181
+ENI A + + +H + A+R++
Sbjct: 165 LENICLGASAVGYRTESMHGAGSPQAQRIM 194
>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon
Aeropyrum pernix [TaxId: 56636]}
Length = 234
Score = 27.3 bits (60), Expect = 2.4
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 16/91 (17%)
Query: 232 YSLLRKRLHWQKVHHMVHEAVEIETQFVC----------EALP------CALIGMNSSLM 275
+LL R + V ++V EA + + C++IG
Sbjct: 26 STLLSPRATEEDVRNLVREASDYGFRCAVLTPVYTVKISGLAEKLGVKLCSVIGFPLGQA 85
Query: 276 SQYIKFVADRLLVALGCQRKYNVENPFDWME 306
+K V + ++ G V + E
Sbjct: 86 PLEVKLVEAQTVLEAGATELDVVPHLSLGPE 116
>d1lp3a_ b.121.5.2 (A:) Dependovirus capsid protein
{Adeno-associated virus, aav-2 [TaxId: 272636]}
Length = 519
Score = 27.2 bits (60), Expect = 3.1
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 56 SFWTAEEVDLSQDVQHWERLLDSEKHFISHVLA 88
W D+ W ++ ++ HF L
Sbjct: 388 MVWQDR--DVYLQGPIWAKIPHTDGHFHPSPLM 418
>d1jeya1 b.131.1.1 (A:254-534) Ku70 subunit middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 281
Score = 26.8 bits (59), Expect = 3.7
Identities = 6/34 (17%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 231 LYSLLR--KRLHWQKVHHMVHEAVEIETQFVCEA 262
+Y+L++ + K++ +E V+ +T+ +
Sbjct: 20 IYNLVQKALKPPPIKLYRETNEPVKTKTRTFNTS 53
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 729
Score = 26.3 bits (58), Expect = 7.7
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 18 GEQEQEDQEPILMEQNQRFC 37
G + Q D E +L + F
Sbjct: 392 GRKMQADFEGVLERRIHDFI 411
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.136 0.418
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,310,156
Number of extensions: 59429
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 24
Length of query: 348
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 262
Effective length of database: 1,226,816
Effective search space: 321425792
Effective search space used: 321425792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.7 bits)