BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018965
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A24|A Chain A, Structural And Functional Analysis Of The Deaf-1 And Bs69
Mynd Domains
Length = 47
Score = 32.3 bits (72), Expect = 0.45, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 278 CGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKREC 317
CGR C+ C KVNYCS CQ DWK H+ C
Sbjct: 10 CGR-----EAMSECTGCHKVNYCSTFCQRKDWKD-HQHIC 43
>pdb|3GRF|A Chain A, X-Ray Structure Of Ornithine Transcarbamoylase From
Giardia Lamblia
Length = 328
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
Query: 176 GHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSKTRTRHQSYYFQLARATDAQIPCSPL 235
GH + G N+ G + ++ A F + V R + A A +PC
Sbjct: 71 GHAIYYELGANSNV--GGKETVQDTAEVFSRMVDICTARLATKEMMREMAQHASVPCINA 128
Query: 236 LSDFGYNVEAPEVHPVNNFL--KEWFESGVSDLGNGLRLCSYSGCG 279
L DFG+ ++ V +F+ KE F + + NG + ++ CG
Sbjct: 129 LDDFGHPLQM-----VCDFMTIKEKF-TAAGEFSNGFKGIKFAYCG 168
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 278 CGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKREC 317
C + + ++H RC C +YC R CQ W HK EC
Sbjct: 55 CFKRQEKLH---RCGQCKFAHYCDRTCQKDAW-LNHKNEC 90
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 283 TRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVP 319
TR +C C + YC+ CQ DW HK EC P
Sbjct: 57 TRKEGLSKCGRCKQAFYCNVECQKEDWPM-HKLECSP 92
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 283 TRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVP 319
TR +C C + YC+ CQ DW HK EC P
Sbjct: 57 TRKEGLSKCGRCKQAFYCNVECQKEDWPM-HKLECSP 92
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 283 TRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVP 319
TR +C C + YC+ CQ DW HK EC P
Sbjct: 57 TRKEGLSKCGRCKQAFYCNVECQKEDWPM-HKLECSP 92
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 290 RCSVCGKVNYCSRACQAIDWKTRHKREC 317
RCS C YCS CQ W HKREC
Sbjct: 97 RCSQCRVAKYCSAKCQKKAWPD-HKREC 123
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 290 RCSVCGKVNYCSRACQAIDWKTRHKREC 317
RCS C YCS CQ W HKREC
Sbjct: 63 RCSQCRVAKYCSAKCQKKAWPD-HKREC 89
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 290 RCSVCGKVNYCSRACQAIDWKTRHKREC 317
RCS C YCS CQ W HKREC
Sbjct: 61 RCSQCRVAKYCSAKCQKKAWPD-HKREC 87
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 290 RCSVCGKVNYCSRACQAIDWKTRHKREC 317
RCS C YCS CQ W HKREC
Sbjct: 61 RCSQCRVAKYCSAKCQKKAWPD-HKREC 87
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 290 RCSVCGKVNYCSRACQAIDWKTRHKREC 317
RCS C YCS CQ W HKREC
Sbjct: 62 RCSQCRVAKYCSAKCQKKAWPD-HKREC 88
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 290 RCSVCGKVNYCSRACQAIDWKTRHKREC 317
RCS C YCS CQ W HKREC
Sbjct: 62 RCSQCRVAKYCSAKCQKKAWPD-HKREC 88
>pdb|2JW6|A Chain A, Solution Structure Of The Deaf1 Mynd Domain
Length = 52
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 291 CSVCGKVNYCSRACQAIDWK 310
C+ C KVNYCS CQ DWK
Sbjct: 23 CTGCHKVNYCSTFCQRKDWK 42
>pdb|1OUV|A Chain A, Helicobacter Cysteine Rich Protein C (Hcpc)
Length = 273
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 134 YSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGR 193
++L V+ + G G EK+L+ + A+A + + + LG+ G GV QN K
Sbjct: 42 FNLGVLYYQGQG---VEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKAL 98
Query: 194 RLLIEA 199
+ +A
Sbjct: 99 QYYSKA 104
>pdb|2ODD|A Chain A, Solution Structure Of The Mynd Domain From Aml1-Eto
Complexed With Smrt, A Corepressor
Length = 64
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 278 CGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRH 313
CGR + CS C YC CQ DW+ H
Sbjct: 23 CGRKASET-----CSGCNTARYCGSFCQHKDWEKHH 53
>pdb|1YIF|A Chain A, Crystal Structure Of Beta-1,4-Xylosidase From Bacillus
Subtilis, New York Structural Genomics Consortium
pdb|1YIF|B Chain B, Crystal Structure Of Beta-1,4-Xylosidase From Bacillus
Subtilis, New York Structural Genomics Consortium
pdb|1YIF|C Chain C, Crystal Structure Of Beta-1,4-Xylosidase From Bacillus
Subtilis, New York Structural Genomics Consortium
pdb|1YIF|D Chain D, Crystal Structure Of Beta-1,4-Xylosidase From Bacillus
Subtilis, New York Structural Genomics Consortium
Length = 533
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 242 NVEAP-EVHPVNNFLKEWFESGVSDLGNGLRLCSYSGCGRPETRVHEYRRCSVCGK 296
N+E P EVHP N L W D GN L+ C ++ +T E+ + G+
Sbjct: 219 NIEGPYEVHPDNPILTSW-----HDPGNPLQKCGHASI--VQTHTDEWYLAHLTGR 267
>pdb|3LJQ|A Chain A, Crystal Structure Of The Glycosylasparaginase T152c
Apo-Precursor
pdb|3LJQ|C Chain C, Crystal Structure Of The Glycosylasparaginase T152c
Apo-Precursor
Length = 299
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 147 GKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRL 195
GKN KD++ G + G +C+QDG+ + +KG RL
Sbjct: 251 GKNLKDIQVGFIALNKKGEYG--------AYCIQDGFNFAVHDQKGNRL 291
>pdb|9GAF|A Chain A, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAF|C Chain C, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 147 GKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRL 195
GKN KD++ G + G +C+QDG+ + +KG RL
Sbjct: 247 GKNLKDIQVGFIALNKKGEYG--------AYCIQDGFNFAVHDQKGNRL 287
>pdb|1P4K|A Chain A, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant
pdb|1P4K|C Chain C, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant
pdb|1P4V|A Chain A, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant With Glycine
pdb|1P4V|C Chain C, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant With Glycine
Length = 295
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 147 GKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRL 195
GKN KD++ G + G +C+QDG+ + +KG RL
Sbjct: 247 GKNLKDIQVGFIALNKKGEYG--------AYCIQDGFNFAVHDQKGNRL 287
>pdb|2XM6|A Chain A, Crystal Structure Of The Protein Corresponding To Locus
C5321 From Cft073 E.Coli Strain
Length = 490
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 88 LKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMA---KAAMKSHAPALYSLAVIQFNGS 144
LK+ +G +A LG F + T M +AA + + PA Y L + NG
Sbjct: 30 LKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGE 89
Query: 145 GGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVR 186
G +D V +AA G A + LG +G GV+
Sbjct: 90 G---VPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVK 128
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 290 RCSVCGKVNYCSRACQAIDWKTRHKREC 317
+C C + YC CQ DW HK EC
Sbjct: 64 KCGRCKQAFYCDVECQKEDWPL-HKLEC 90
>pdb|9GAA|A Chain A, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAA|C Chain C, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 147 GKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRL 195
GKN KD++ G + G +C+QDG+ + +KG RL
Sbjct: 247 GKNLKDIQVGFIALNKKGEYG--------AYCIQDGFNFAVHDQKGNRL 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,926,776
Number of Sequences: 62578
Number of extensions: 398890
Number of successful extensions: 777
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 34
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)