Query 018965
Match_columns 348
No_of_seqs 415 out of 3170
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:33:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018965.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018965hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0790 FOG: TPR repeat, SEL1 99.9 3.2E-21 7E-26 181.4 20.7 128 80-210 92-228 (292)
2 COG0790 FOG: TPR repeat, SEL1 99.8 1.1E-18 2.5E-23 164.1 15.5 127 81-210 57-192 (292)
3 KOG1550 Extracellular protein 99.8 3E-18 6.4E-23 174.8 14.7 127 80-210 264-401 (552)
4 KOG1550 Extracellular protein 99.7 2E-17 4.3E-22 168.8 13.6 126 81-210 228-365 (552)
5 KOG4014 Uncharacterized conser 99.4 3.1E-12 6.8E-17 109.7 13.5 121 81-201 89-232 (248)
6 KOG4014 Uncharacterized conser 99.3 8.3E-11 1.8E-15 101.1 12.3 130 81-210 51-205 (248)
7 PF01753 zf-MYND: MYND finger; 98.9 6.4E-10 1.4E-14 71.7 1.9 34 278-317 4-37 (37)
8 smart00671 SEL1 Sel1-like repe 98.6 6E-08 1.3E-12 61.5 4.5 35 170-204 2-36 (36)
9 PF08238 Sel1: Sel1 repeat; I 98.6 7.1E-08 1.5E-12 62.4 3.9 34 170-203 2-38 (39)
10 PF08238 Sel1: Sel1 repeat; I 98.5 1.5E-07 3.2E-12 60.9 4.4 36 130-168 1-39 (39)
11 smart00671 SEL1 Sel1-like repe 98.5 1.5E-07 3.3E-12 59.6 4.4 36 130-168 1-36 (36)
12 KOG1710 MYND Zn-finger and ank 98.2 1.8E-07 3.9E-12 85.5 -0.8 44 270-320 319-362 (396)
13 PRK10370 formate-dependent nit 97.9 0.00045 9.7E-09 61.5 14.2 120 81-209 55-180 (198)
14 TIGR02552 LcrH_SycD type III s 97.7 0.00092 2E-08 54.8 12.6 106 87-204 5-116 (135)
15 TIGR02521 type_IV_pilW type IV 97.6 0.0077 1.7E-07 52.6 17.9 111 80-202 80-198 (234)
16 KOG1155 Anaphase-promoting com 97.6 0.0033 7.1E-08 61.7 16.1 109 81-201 380-494 (559)
17 KOG4626 O-linked N-acetylgluco 97.6 0.0017 3.6E-08 65.8 14.3 110 81-202 302-417 (966)
18 PRK15359 type III secretion sy 97.6 0.002 4.3E-08 54.3 13.0 109 86-207 14-126 (144)
19 PRK11788 tetratricopeptide rep 97.5 0.0046 1E-07 59.9 16.6 110 81-202 157-278 (389)
20 TIGR02521 type_IV_pilW type IV 97.5 0.0042 9E-08 54.4 14.6 113 80-204 46-166 (234)
21 KOG4626 O-linked N-acetylgluco 97.5 0.0014 3E-08 66.4 12.1 109 81-201 268-382 (966)
22 PRK12370 invasion protein regu 97.4 0.004 8.6E-08 64.1 14.6 109 81-202 320-435 (553)
23 PRK12370 invasion protein regu 97.4 0.015 3.3E-07 59.8 18.8 112 81-203 277-402 (553)
24 KOG1155 Anaphase-promoting com 97.4 0.0046 1E-07 60.8 13.7 118 81-210 346-471 (559)
25 KOG2003 TPR repeat-containing 97.3 0.005 1.1E-07 60.3 13.8 94 80-181 505-604 (840)
26 TIGR00990 3a0801s09 mitochondr 97.3 0.0046 9.9E-08 64.4 14.8 112 80-203 309-429 (615)
27 PRK15359 type III secretion sy 97.3 0.015 3.3E-07 48.9 15.2 90 81-178 40-135 (144)
28 TIGR00990 3a0801s09 mitochondr 97.3 0.018 3.9E-07 59.9 18.3 112 80-203 380-497 (615)
29 PRK09782 bacteriophage N4 rece 97.2 0.007 1.5E-07 66.2 15.1 114 80-205 591-709 (987)
30 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0075 1.6E-07 47.6 11.4 95 97-203 2-106 (119)
31 PRK02603 photosystem I assembl 97.2 0.0058 1.3E-07 52.8 11.4 99 94-200 32-140 (172)
32 PRK11189 lipoprotein NlpI; Pro 97.1 0.017 3.6E-07 54.7 14.7 113 81-204 80-196 (296)
33 PRK11189 lipoprotein NlpI; Pro 97.1 0.017 3.8E-07 54.5 14.6 112 81-204 42-163 (296)
34 PRK02603 photosystem I assembl 96.9 0.037 8.1E-07 47.7 14.1 109 80-201 50-166 (172)
35 PF13414 TPR_11: TPR repeat; P 96.9 0.0033 7.1E-08 45.4 6.4 63 96-165 2-66 (69)
36 PRK11447 cellulose synthase su 96.9 0.066 1.4E-06 60.0 19.1 118 79-208 283-422 (1157)
37 PRK11447 cellulose synthase su 96.9 0.022 4.7E-07 63.8 15.3 117 81-202 367-524 (1157)
38 PRK11788 tetratricopeptide rep 96.8 0.031 6.7E-07 54.1 14.0 113 81-205 85-212 (389)
39 cd00189 TPR Tetratricopeptide 96.8 0.014 3.1E-07 42.4 9.0 91 99-201 2-96 (100)
40 PRK15363 pathogenicity island 96.7 0.026 5.7E-07 48.2 11.2 94 98-203 36-133 (157)
41 KOG1126 DNA-binding cell divis 96.6 0.0091 2E-07 60.8 8.8 112 81-204 437-554 (638)
42 PLN03088 SGT1, suppressor of 96.6 0.029 6.3E-07 54.5 11.8 90 81-178 18-113 (356)
43 PLN03088 SGT1, suppressor of 96.5 0.038 8.3E-07 53.7 12.3 96 103-210 8-109 (356)
44 TIGR02552 LcrH_SycD type III s 96.5 0.027 5.8E-07 46.0 9.4 79 81-167 33-115 (135)
45 CHL00033 ycf3 photosystem I as 96.4 0.06 1.3E-06 46.1 12.0 96 97-200 35-140 (168)
46 TIGR02917 PEP_TPR_lipo putativ 96.4 0.059 1.3E-06 57.0 14.4 59 81-140 719-780 (899)
47 TIGR02917 PEP_TPR_lipo putativ 96.4 0.18 4E-06 53.3 17.8 110 81-202 549-664 (899)
48 PF12937 F-box-like: F-box-lik 96.3 0.0021 4.5E-08 43.2 1.8 42 20-66 1-42 (47)
49 PF13429 TPR_15: Tetratricopep 96.3 0.039 8.5E-07 51.3 10.9 107 81-200 162-275 (280)
50 PRK15174 Vi polysaccharide exp 96.3 0.091 2E-06 55.3 14.6 59 81-140 228-294 (656)
51 PRK15174 Vi polysaccharide exp 96.3 0.19 4.2E-06 52.9 16.7 108 81-201 92-205 (656)
52 PF13414 TPR_11: TPR repeat; P 96.2 0.019 4.2E-07 41.2 6.3 63 129-201 2-66 (69)
53 PRK15179 Vi polysaccharide bio 96.2 0.091 2E-06 55.5 13.6 115 81-207 102-222 (694)
54 KOG2003 TPR repeat-containing 96.1 0.026 5.5E-07 55.5 8.5 81 110-201 502-586 (840)
55 KOG2002 TPR-containing nuclear 96.1 0.16 3.5E-06 54.1 14.7 119 81-207 286-414 (1018)
56 KOG3612 PHD Zn-finger protein 96.0 0.0013 2.8E-08 65.3 -0.8 44 268-321 525-568 (588)
57 PF12688 TPR_5: Tetratrico pep 96.0 0.13 2.8E-06 42.0 10.9 93 97-201 1-103 (120)
58 PRK10803 tol-pal system protei 95.9 0.12 2.5E-06 48.2 11.9 97 95-202 140-246 (263)
59 PF13432 TPR_16: Tetratricopep 95.8 0.032 6.8E-07 39.7 6.0 56 102-165 2-59 (65)
60 PRK10049 pgaA outer membrane p 95.8 0.19 4.1E-06 53.9 14.3 108 81-201 65-178 (765)
61 PRK09782 bacteriophage N4 rece 95.7 0.23 5.1E-06 54.6 14.9 119 80-210 557-682 (987)
62 PF14938 SNAP: Soluble NSF att 95.7 0.13 2.7E-06 48.3 11.2 109 82-202 52-184 (282)
63 PF14938 SNAP: Soluble NSF att 95.7 0.093 2E-06 49.2 10.2 98 81-202 31-144 (282)
64 PRK10370 formate-dependent nit 95.7 0.27 5.9E-06 43.6 12.7 83 80-169 88-176 (198)
65 COG3063 PilF Tfp pilus assembl 95.6 0.18 3.8E-06 45.7 11.1 114 78-203 48-169 (250)
66 PF13424 TPR_12: Tetratricopep 95.6 0.033 7.1E-07 41.1 5.7 60 98-165 6-74 (78)
67 PRK15363 pathogenicity island 95.6 0.1 2.2E-06 44.6 9.2 79 81-167 51-133 (157)
68 TIGR03302 OM_YfiO outer membra 95.6 0.39 8.4E-06 43.1 13.6 117 81-202 49-195 (235)
69 CHL00033 ycf3 photosystem I as 95.5 0.13 2.7E-06 44.1 9.8 60 81-141 51-117 (168)
70 PF13424 TPR_12: Tetratricopep 95.5 0.049 1.1E-06 40.1 6.2 61 130-201 5-74 (78)
71 PF12895 Apc3: Anaphase-promot 95.4 0.062 1.4E-06 40.4 6.7 75 81-163 5-84 (84)
72 PF09976 TPR_21: Tetratricopep 95.4 0.19 4.1E-06 42.0 10.3 91 97-199 48-144 (145)
73 PF12895 Apc3: Anaphase-promot 95.4 0.081 1.7E-06 39.8 7.3 77 112-199 3-84 (84)
74 COG3063 PilF Tfp pilus assembl 95.4 0.9 2E-05 41.2 14.6 116 81-208 85-208 (250)
75 PRK10049 pgaA outer membrane p 95.3 0.89 1.9E-05 48.8 17.4 110 81-203 31-146 (765)
76 COG2956 Predicted N-acetylgluc 95.3 0.62 1.3E-05 44.3 13.8 116 81-204 123-245 (389)
77 PF13432 TPR_16: Tetratricopep 95.2 0.088 1.9E-06 37.3 6.6 58 134-202 1-60 (65)
78 KOG1125 TPR repeat-containing 95.2 0.11 2.4E-06 52.4 9.2 107 83-201 412-526 (579)
79 KOG2002 TPR-containing nuclear 95.1 1.1 2.3E-05 48.2 16.5 110 81-202 252-371 (1018)
80 PRK11906 transcriptional regul 95.1 0.78 1.7E-05 45.7 14.6 131 81-222 274-421 (458)
81 TIGR03302 OM_YfiO outer membra 95.0 0.27 5.9E-06 44.1 10.7 100 95-202 31-144 (235)
82 smart00256 FBOX A Receptor for 95.0 0.049 1.1E-06 34.7 4.2 38 23-65 1-38 (41)
83 TIGR02795 tol_pal_ybgF tol-pal 94.9 0.28 6E-06 38.5 9.4 80 80-167 17-106 (119)
84 KOG1129 TPR repeat-containing 94.7 0.42 9.2E-06 45.5 11.1 108 81-200 340-456 (478)
85 PRK10153 DNA-binding transcrip 94.5 1.1 2.3E-05 46.0 14.6 113 81-204 358-484 (517)
86 PF13429 TPR_15: Tetratricopep 94.5 0.4 8.6E-06 44.5 10.6 119 81-209 126-252 (280)
87 cd00189 TPR Tetratricopeptide 94.5 0.31 6.7E-06 35.0 8.1 78 81-166 16-97 (100)
88 COG4235 Cytochrome c biogenesi 94.4 0.54 1.2E-05 44.1 11.1 108 91-207 150-261 (287)
89 PRK11906 transcriptional regul 94.3 0.55 1.2E-05 46.8 11.4 112 100-215 258-380 (458)
90 KOG1126 DNA-binding cell divis 94.2 0.078 1.7E-06 54.3 5.5 101 94-206 418-522 (638)
91 PLN03098 LPA1 LOW PSII ACCUMUL 94.2 0.15 3.3E-06 50.5 7.3 100 92-204 70-176 (453)
92 KOG2061 Uncharacterized MYND Z 94.1 0.023 5E-07 54.3 1.4 46 270-322 136-181 (362)
93 PF13281 DUF4071: Domain of un 94.0 1.6 3.5E-05 42.6 14.0 177 16-202 132-334 (374)
94 PLN03098 LPA1 LOW PSII ACCUMUL 93.9 0.27 5.8E-06 48.8 8.3 70 125-205 70-144 (453)
95 PRK10803 tol-pal system protei 93.6 0.82 1.8E-05 42.6 10.8 78 81-166 159-246 (263)
96 TIGR00540 hemY_coli hemY prote 93.6 1.3 2.8E-05 43.7 12.8 77 112-199 313-396 (409)
97 PRK15179 Vi polysaccharide bio 93.5 0.87 1.9E-05 48.3 12.0 104 95-210 84-193 (694)
98 PRK14574 hmsH outer membrane p 93.5 0.66 1.4E-05 50.1 11.2 112 81-203 84-199 (822)
99 PRK15331 chaperone protein Sic 93.4 1 2.2E-05 38.8 10.2 78 81-166 53-134 (165)
100 PRK14574 hmsH outer membrane p 93.0 1.4 3.1E-05 47.5 12.8 110 81-202 50-165 (822)
101 PF00646 F-box: F-box domain; 92.7 0.027 5.9E-07 37.7 -0.4 41 19-64 2-42 (48)
102 COG2956 Predicted N-acetylgluc 92.6 1.3 2.7E-05 42.3 10.2 116 82-208 158-284 (389)
103 COG5010 TadD Flp pilus assembl 92.1 2.4 5.3E-05 39.0 11.3 112 82-205 83-200 (257)
104 PRK14720 transcript cleavage f 92.0 2.2 4.7E-05 46.4 12.6 109 81-202 47-178 (906)
105 PRK10747 putative protoheme IX 91.9 9 0.0002 37.7 16.2 110 78-201 276-389 (398)
106 KOG2997 F-box protein FBX9 [Ge 91.7 0.17 3.7E-06 47.7 3.4 48 20-67 107-154 (366)
107 PF13428 TPR_14: Tetratricopep 91.5 0.34 7.4E-06 31.7 3.9 25 152-176 16-42 (44)
108 KOG1586 Protein required for f 91.3 1.7 3.7E-05 39.7 9.2 97 81-201 30-142 (288)
109 PLN03158 methionine aminopepti 91.2 0.18 3.8E-06 49.8 3.2 42 267-316 6-54 (396)
110 cd05804 StaR_like StaR_like; a 91.2 2.8 6E-05 39.9 11.5 93 98-202 115-215 (355)
111 PF07719 TPR_2: Tetratricopept 90.8 0.42 9.1E-06 28.8 3.6 28 98-126 2-29 (34)
112 COG1729 Uncharacterized protei 90.7 3.2 6.9E-05 38.5 10.7 91 100-202 144-244 (262)
113 PRK10747 putative protoheme IX 90.3 6 0.00013 38.9 13.2 116 77-204 97-218 (398)
114 KOG2120 SCF ubiquitin ligase, 90.2 0.42 9.1E-06 45.2 4.5 51 13-68 91-141 (419)
115 PF12688 TPR_5: Tetratrico pep 89.7 3.6 7.9E-05 33.5 9.2 77 81-165 17-103 (120)
116 KOG3617 WD40 and TPR repeat-co 89.7 1.5 3.2E-05 46.6 8.3 37 165-205 963-999 (1416)
117 KOG1173 Anaphase-promoting com 89.6 3.6 7.9E-05 41.9 10.8 45 153-201 471-517 (611)
118 PF13428 TPR_14: Tetratricopep 89.5 0.9 1.9E-05 29.7 4.6 41 97-138 1-43 (44)
119 TIGR00540 hemY_coli hemY prote 88.8 5.6 0.00012 39.2 11.7 96 95-198 261-360 (409)
120 PLN03218 maturation of RBCL 1; 88.5 13 0.00028 41.6 15.2 116 81-205 665-786 (1060)
121 KOG2076 RNA polymerase III tra 88.2 7 0.00015 41.9 12.1 112 81-204 155-272 (895)
122 KOG0547 Translocase of outer m 88.0 5.3 0.00011 40.2 10.5 89 111-203 475-567 (606)
123 KOG0547 Translocase of outer m 88.0 5.5 0.00012 40.1 10.6 114 80-205 375-494 (606)
124 PF13824 zf-Mss51: Zinc-finger 87.8 0.2 4.3E-06 34.9 0.4 35 287-322 13-47 (55)
125 PF13371 TPR_9: Tetratricopept 87.6 2.6 5.6E-05 30.1 6.5 51 110-167 7-59 (73)
126 KOG1130 Predicted G-alpha GTPa 87.6 1.8 3.9E-05 42.6 6.9 104 91-206 225-352 (639)
127 PRK15331 chaperone protein Sic 87.5 5.9 0.00013 34.2 9.3 84 110-204 49-136 (165)
128 PF14559 TPR_19: Tetratricopep 87.3 1.1 2.4E-05 31.6 4.3 49 152-204 6-56 (68)
129 PF14559 TPR_19: Tetratricopep 87.3 1.8 3.8E-05 30.5 5.3 46 81-127 7-54 (68)
130 PF00515 TPR_1: Tetratricopept 87.0 1.1 2.5E-05 27.0 3.6 28 98-126 2-29 (34)
131 COG5010 TadD Flp pilus assembl 86.8 10 0.00023 34.9 11.1 94 78-179 113-212 (257)
132 PF09976 TPR_21: Tetratricopep 86.7 5 0.00011 33.2 8.6 76 80-163 63-144 (145)
133 KOG1840 Kinesin light chain [C 86.4 5.3 0.00011 40.8 9.9 91 99-201 201-311 (508)
134 PF11207 DUF2989: Protein of u 86.3 5.3 0.00011 35.6 8.7 91 88-195 101-200 (203)
135 PRK10866 outer membrane biogen 86.0 14 0.0003 33.9 11.8 76 96-179 31-116 (243)
136 KOG1127 TPR repeat-containing 85.9 4.3 9.4E-05 44.1 9.1 126 81-210 18-151 (1238)
137 PF07719 TPR_2: Tetratricopept 85.8 2 4.3E-05 25.7 4.3 28 170-201 2-29 (34)
138 KOG4555 TPR repeat-containing 85.6 9.5 0.00021 31.9 9.2 88 112-210 57-152 (175)
139 PF09295 ChAPs: ChAPs (Chs5p-A 85.4 15 0.00032 36.3 12.3 101 81-194 185-289 (395)
140 KOG4162 Predicted calmodulin-b 85.2 19 0.0004 38.2 13.1 114 81-204 666-785 (799)
141 PF13176 TPR_7: Tetratricopept 84.8 1.4 3.1E-05 27.4 3.3 24 100-124 2-25 (36)
142 PF06552 TOM20_plant: Plant sp 83.9 5.4 0.00012 35.0 7.4 60 82-141 8-80 (186)
143 PF13431 TPR_17: Tetratricopep 83.1 0.98 2.1E-05 28.0 2.0 14 95-108 11-24 (34)
144 KOG1129 TPR repeat-containing 81.9 5 0.00011 38.5 6.9 118 81-210 306-434 (478)
145 KOG3060 Uncharacterized conser 81.6 45 0.00098 31.0 13.4 116 80-204 101-222 (289)
146 PLN03218 maturation of RBCL 1; 81.5 85 0.0018 35.3 17.4 49 152-204 629-680 (1060)
147 KOG4555 TPR repeat-containing 80.7 23 0.0005 29.7 9.6 90 80-177 58-155 (175)
148 PLN02789 farnesyltranstransfer 80.5 37 0.00081 32.5 12.7 95 84-181 127-229 (320)
149 PF06552 TOM20_plant: Plant sp 80.1 7.9 0.00017 33.9 7.1 90 115-205 8-112 (186)
150 PF13181 TPR_8: Tetratricopept 80.1 3.3 7.1E-05 24.8 3.6 26 99-125 3-28 (34)
151 PF13176 TPR_7: Tetratricopept 80.0 3.8 8.3E-05 25.4 3.9 26 171-200 1-26 (36)
152 KOG1941 Acetylcholine receptor 79.9 24 0.00052 34.5 10.8 119 81-209 138-286 (518)
153 PF13371 TPR_9: Tetratricopept 79.7 7.4 0.00016 27.7 6.0 53 150-206 8-62 (73)
154 KOG1173 Anaphase-promoting com 79.3 20 0.00044 36.7 10.6 108 81-200 328-441 (611)
155 PRK10153 DNA-binding transcrip 78.6 11 0.00024 38.6 8.9 73 95-175 418-491 (517)
156 cd05804 StaR_like StaR_like; a 78.6 27 0.00059 33.0 11.2 111 80-203 58-178 (355)
157 KOG2857 Predicted MYND Zn-fing 78.3 1.9 4.2E-05 35.8 2.6 27 289-321 18-46 (157)
158 PF13174 TPR_6: Tetratricopept 78.2 2.3 5E-05 25.2 2.4 25 99-124 2-26 (33)
159 PRK14720 transcript cleavage f 77.5 27 0.00059 38.2 11.7 75 83-166 100-178 (906)
160 KOG1586 Protein required for f 77.3 7.8 0.00017 35.5 6.4 75 83-165 59-142 (288)
161 KOG2076 RNA polymerase III tra 77.2 51 0.0011 35.6 13.2 92 103-206 145-240 (895)
162 KOG1840 Kinesin light chain [C 77.1 54 0.0012 33.6 13.2 114 81-200 341-477 (508)
163 PF00515 TPR_1: Tetratricopept 76.8 6.6 0.00014 23.5 4.3 28 170-201 2-29 (34)
164 PF13174 TPR_6: Tetratricopept 76.7 4.2 9E-05 24.0 3.3 28 131-165 1-28 (33)
165 PF13525 YfiO: Outer membrane 76.3 15 0.00033 32.4 8.2 98 95-200 3-117 (203)
166 KOG1130 Predicted G-alpha GTPa 75.7 16 0.00035 36.2 8.5 90 81-178 251-364 (639)
167 KOG1127 TPR repeat-containing 75.6 16 0.00034 40.0 9.1 91 110-207 14-108 (1238)
168 PF09986 DUF2225: Uncharacteri 75.6 13 0.00028 33.5 7.5 50 153-206 141-198 (214)
169 KOG4162 Predicted calmodulin-b 75.2 23 0.0005 37.5 10.0 118 81-202 373-507 (799)
170 KOG3362 Predicted BBOX Zn-fing 74.7 1.5 3.3E-05 36.5 1.1 38 266-311 114-151 (156)
171 PLN02789 farnesyltranstransfer 74.5 82 0.0018 30.1 14.0 115 81-202 88-212 (320)
172 PF04438 zf-HIT: HIT zinc fing 74.0 2.2 4.7E-05 25.9 1.4 27 272-306 4-30 (30)
173 PF13181 TPR_8: Tetratricopept 74.0 8.9 0.00019 22.8 4.3 28 131-165 2-29 (34)
174 PF13374 TPR_10: Tetratricopep 72.5 6.6 0.00014 24.4 3.6 26 99-125 4-29 (42)
175 KOG3060 Uncharacterized conser 71.5 29 0.00063 32.2 8.7 76 94-174 151-230 (289)
176 PF13281 DUF4071: Domain of un 71.4 19 0.0004 35.3 7.9 88 94-183 178-274 (374)
177 KOG1128 Uncharacterized conser 71.2 26 0.00057 37.0 9.2 104 87-202 472-582 (777)
178 COG4783 Putative Zn-dependent 70.1 1E+02 0.0022 31.2 12.7 93 81-181 322-420 (484)
179 COG1729 Uncharacterized protei 70.0 15 0.00033 34.1 6.7 62 97-166 178-244 (262)
180 PF13374 TPR_10: Tetratricopep 70.0 11 0.00024 23.3 4.3 29 169-201 2-30 (42)
181 KOG3617 WD40 and TPR repeat-co 69.4 13 0.00029 39.8 6.7 32 93-125 963-994 (1416)
182 PRK10866 outer membrane biogen 69.3 91 0.002 28.4 11.8 86 80-166 47-153 (243)
183 KOG1125 TPR repeat-containing 68.8 39 0.00084 34.7 9.6 73 101-181 289-365 (579)
184 PLN03081 pentatricopeptide (PP 67.7 30 0.00064 36.7 9.3 78 81-165 376-454 (697)
185 PF11207 DUF2989: Protein of u 67.0 30 0.00066 30.8 7.6 70 81-159 122-200 (203)
186 KOG0543 FKBP-type peptidyl-pro 66.7 51 0.0011 32.4 9.7 62 131-203 258-321 (397)
187 KOG0543 FKBP-type peptidyl-pro 66.5 58 0.0013 32.0 10.1 75 98-180 258-336 (397)
188 PLN03077 Protein ECB2; Provisi 66.3 89 0.0019 33.9 12.8 114 81-204 304-420 (857)
189 smart00028 TPR Tetratricopepti 65.2 6.8 0.00015 21.5 2.4 26 99-125 3-28 (34)
190 COG4235 Cytochrome c biogenesi 62.2 1.4E+02 0.0031 28.1 12.8 81 81-168 172-258 (287)
191 PLN03077 Protein ECB2; Provisi 61.9 1.1E+02 0.0024 33.2 12.6 106 81-198 540-650 (857)
192 KOG1585 Protein required for f 61.1 31 0.00067 32.0 6.7 45 152-201 86-138 (308)
193 KOG2047 mRNA splicing factor [ 59.1 88 0.0019 32.9 10.2 113 80-202 526-651 (835)
194 PLN03081 pentatricopeptide (PP 55.8 1.2E+02 0.0027 31.9 11.4 15 81-95 306-320 (697)
195 PF10373 EST1_DNA_bind: Est1 D 55.7 36 0.00078 31.0 6.5 58 84-142 1-62 (278)
196 KOG0553 TPR repeat-containing 55.1 75 0.0016 30.1 8.4 78 81-166 97-178 (304)
197 PF10300 DUF3808: Protein of u 54.8 1.1E+02 0.0024 30.9 10.3 114 81-202 204-334 (468)
198 PF08631 SPO22: Meiosis protei 54.6 1.8E+02 0.0039 26.9 13.0 116 81-203 9-151 (278)
199 PF05843 Suf: Suppressor of fo 54.0 1.3E+02 0.0028 27.9 10.1 113 81-202 17-136 (280)
200 PRK01343 zinc-binding protein; 53.1 9.4 0.0002 26.8 1.6 15 296-310 23-37 (57)
201 PF10373 EST1_DNA_bind: Est1 D 52.2 38 0.00082 30.9 6.1 58 117-181 1-62 (278)
202 PF12855 Ecl1: Life-span regul 50.8 8.3 0.00018 25.5 1.0 18 294-311 20-37 (43)
203 KOG0553 TPR repeat-containing 50.2 1.1E+02 0.0024 29.0 8.7 87 110-207 93-183 (304)
204 COG3071 HemY Uncharacterized e 50.2 1.9E+02 0.0042 28.5 10.5 88 110-209 275-364 (400)
205 PF09986 DUF2225: Uncharacteri 49.5 37 0.00081 30.5 5.4 19 19-37 62-80 (214)
206 PF10300 DUF3808: Protein of u 49.3 2.7E+02 0.0059 28.1 12.1 116 81-204 249-378 (468)
207 PF04733 Coatomer_E: Coatomer 47.8 61 0.0013 30.5 6.8 111 80-202 117-230 (290)
208 PF04733 Coatomer_E: Coatomer 46.8 1.6E+02 0.0035 27.7 9.4 94 81-181 147-247 (290)
209 cd02681 MIT_calpain7_1 MIT: do 46.6 80 0.0017 23.5 5.8 32 82-127 4-35 (76)
210 PF07721 TPR_4: Tetratricopept 45.1 20 0.00043 20.4 1.9 22 99-121 3-24 (26)
211 KOG1585 Protein required for f 44.6 90 0.0019 29.0 6.9 77 81-165 47-138 (308)
212 PRK04841 transcriptional regul 43.7 2.4E+02 0.0052 30.6 11.5 109 80-200 506-639 (903)
213 PRK04841 transcriptional regul 43.1 3.5E+02 0.0075 29.3 12.7 109 81-201 468-601 (903)
214 cd02680 MIT_calpain7_2 MIT: do 41.8 52 0.0011 24.5 4.2 14 152-165 21-34 (75)
215 PF10013 DUF2256: Uncharacteri 41.8 11 0.00025 24.6 0.6 31 271-306 9-40 (42)
216 PF09205 DUF1955: Domain of un 40.8 1.1E+02 0.0024 25.7 6.3 43 126-175 116-158 (161)
217 KOG2738 Putative methionine am 39.1 14 0.00031 34.9 0.9 44 269-318 5-53 (369)
218 KOG0548 Molecular co-chaperone 38.3 4.6E+02 0.01 27.0 14.5 97 104-201 365-471 (539)
219 PLN03215 ascorbic acid mannose 38.2 34 0.00074 33.5 3.5 37 20-60 4-40 (373)
220 PF07064 RIC1: RIC1; InterPro 36.0 3.6E+02 0.0078 25.0 9.8 58 119-179 184-246 (258)
221 KOG4317 Predicted Zn-finger pr 35.9 15 0.00032 34.8 0.6 17 289-306 20-36 (383)
222 PF13525 YfiO: Outer membrane 35.5 1.7E+02 0.0037 25.6 7.4 64 128-202 3-71 (203)
223 KOG1174 Anaphase-promoting com 35.4 1.9E+02 0.0041 29.0 8.0 104 94-209 399-506 (564)
224 PF09295 ChAPs: ChAPs (Chs5p-A 34.8 4.3E+02 0.0093 26.2 10.6 87 109-207 180-268 (395)
225 KOG0495 HAT repeat protein [RN 34.5 3.3E+02 0.0072 29.0 9.8 111 81-202 735-846 (913)
226 PF12569 NARP1: NMDA receptor- 33.4 2.4E+02 0.0052 29.0 8.9 95 99-201 196-312 (517)
227 PRK00418 DNA gyrase inhibitor; 33.3 28 0.0006 24.9 1.5 13 298-310 26-38 (62)
228 PF13512 TPR_18: Tetratricopep 29.4 3.4E+02 0.0074 22.8 10.8 90 96-193 9-116 (142)
229 KOG1156 N-terminal acetyltrans 29.1 2.6E+02 0.0056 29.5 8.1 59 81-140 57-119 (700)
230 PF07064 RIC1: RIC1; InterPro 28.4 3.1E+02 0.0067 25.4 8.0 63 158-220 184-251 (258)
231 PF08631 SPO22: Meiosis protei 27.1 1.2E+02 0.0027 28.0 5.2 53 111-164 6-63 (278)
232 PF14852 Fis1_TPR_N: Fis1 N-te 26.9 93 0.002 19.4 2.9 30 130-163 1-30 (35)
233 PF12753 Nro1: Nuclear pore co 26.9 54 0.0012 32.3 2.7 52 153-204 334-393 (404)
234 KOG1174 Anaphase-promoting com 26.1 5.3E+02 0.011 26.0 9.3 109 81-200 350-465 (564)
235 PF04212 MIT: MIT (microtubule 25.9 1.1E+02 0.0023 21.8 3.6 18 110-127 17-34 (69)
236 KOG4340 Uncharacterized conser 25.4 1.8E+02 0.0038 28.0 5.7 74 86-167 133-208 (459)
237 KOG3824 Huntingtin interacting 25.1 1.9E+02 0.004 27.9 5.8 64 135-210 122-189 (472)
238 PF13013 F-box-like_2: F-box-l 24.7 1E+02 0.0022 24.7 3.5 35 19-58 21-55 (109)
239 PF04181 RPAP2_Rtr1: Rtr1/RPAP 24.6 80 0.0017 23.4 2.8 38 270-307 20-69 (79)
240 COG3071 HemY Uncharacterized e 24.4 7E+02 0.015 24.7 13.2 51 81-131 100-152 (400)
241 PF09205 DUF1955: Domain of un 22.9 4.7E+02 0.01 22.1 8.4 97 103-210 60-157 (161)
242 PF13512 TPR_18: Tetratricopep 22.9 4.1E+02 0.0089 22.3 7.0 81 81-165 26-127 (142)
243 KOG3783 Uncharacterized conser 22.7 3.3E+02 0.0071 28.1 7.4 49 152-203 464-521 (546)
244 COG3024 Uncharacterized protei 22.5 42 0.0009 24.1 0.8 14 297-310 26-39 (65)
245 PF03884 DUF329: Domain of unk 21.9 58 0.0013 22.9 1.4 13 298-310 22-34 (57)
246 KOG4323 Polycomb-like PHD Zn-f 21.5 45 0.00097 33.6 1.1 24 272-296 170-193 (464)
247 KOG1156 N-terminal acetyltrans 21.3 8.1E+02 0.018 26.0 9.9 79 88-176 34-116 (700)
248 PF10602 RPN7: 26S proteasome 21.2 2.2E+02 0.0048 24.5 5.3 30 98-128 37-66 (177)
No 1
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=99.88 E-value=3.2e-21 Score=181.38 Aligned_cols=128 Identities=22% Similarity=0.248 Sum_probs=122.8
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHhhhhhh---hccCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHcc---CCCCCCc
Q 018965 80 WSDSAHRFLKRCVFAGNLEACYTLGMIRF---YCLQNRSSGTSLMAKAAMKSHAPA---LYSLAVIQFNG---SGGGKNE 150 (348)
Q Consensus 80 ~~~~A~~~~~kaA~~G~~~A~~~Lg~~y~---~~~~d~~~A~~~~~~AA~~G~~~A---~~~Lg~~y~~G---~g~~~~~ 150 (348)
+..+|+.||+++++.|++.+++.||.+|. |+++|..+|+.||++||++|++.| ++.||.+|..| .+ ++
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~---~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALA---VA 168 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhc---cc
Confidence 37899999999999999999999999998 689999999999999999999999 99999999999 77 99
Q ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHh
Q 018965 151 KDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSK 210 (348)
Q Consensus 151 ~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~ 210 (348)
.|..+|+.||.+|+++|++.|++.||.+|..|.||++|.++|++||.+|+++|+..++..
T Consensus 169 ~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~ 228 (292)
T COG0790 169 YDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYN 228 (292)
T ss_pred HHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999777764
No 2
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=99.80 E-value=1.1e-18 Score=164.06 Aligned_cols=127 Identities=22% Similarity=0.219 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHhhhhhh---hccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHH
Q 018965 81 SDSAHRFLKRCVFAGNLEACYTLGMIRF---YCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGV 157 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~---~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~ 157 (348)
..++..++.+++..|++.+++.|+.+|. ++++|..+|++||+++++.|++.++++||.||..|.| |++|+.+|+
T Consensus 57 ~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~g---v~~d~~~A~ 133 (292)
T COG0790 57 YAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRG---VPLDLVKAL 133 (292)
T ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCC---cccCHHHHH
Confidence 7899999999999999999999999998 8999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHhCCCHHH---HHHHHHHHhcc---CCCCCCHHHHHHHHHHHHhcCCHHHHHh
Q 018965 158 ALCARAASIGHVDA---VRELGHCLQDG---YGVRQNIEKGRRLLIEANAREFFQSVSK 210 (348)
Q Consensus 158 ~~~~kAA~~G~~~A---~~~Lg~~y~~G---~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~ 210 (348)
.||++||++|++.| ++.||.+|..| .|+..|..+|+.||++|+++|++.||..
T Consensus 134 ~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~ 192 (292)
T COG0790 134 KYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLL 192 (292)
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999 99999999999 8999999999999999999999999987
No 3
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.77 E-value=3e-18 Score=174.84 Aligned_cols=127 Identities=27% Similarity=0.295 Sum_probs=119.8
Q ss_pred cHHHHHHHHHHHHH-------CCCHHHHHHhhhhhh---hccC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCC
Q 018965 80 WSDSAHRFLKRCVF-------AGNLEACYTLGMIRF---YCLQ-NRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGK 148 (348)
Q Consensus 80 ~~~~A~~~~~kaA~-------~G~~~A~~~Lg~~y~---~~~~-d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~ 148 (348)
+.++|+.||+.+|+ +|++.|++.||.+|. ++.. |..+|+.+|.+||+.|++.|+|.||.+|..|.
T Consensus 264 d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~---- 339 (552)
T KOG1550|consen 264 DLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGT---- 339 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC----
Confidence 48999999999999 999999999999998 4677 99999999999999999999999999999986
Q ss_pred CccCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHh
Q 018965 149 NEKDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSK 210 (348)
Q Consensus 149 ~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~ 210 (348)
.++|..+|++||..||..|+..|+++|+.||+.|.||++|.++|+.||++||+.|++.|+..
T Consensus 340 ~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~ 401 (552)
T KOG1550|consen 340 KERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYL 401 (552)
T ss_pred ccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHH
Confidence 36899999999999999999999999999999999999999999999999999999988875
No 4
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.73 E-value=2e-17 Score=168.79 Aligned_cols=126 Identities=25% Similarity=0.334 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHhhhhhh----hccCCHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHccCCCCCC
Q 018965 81 SDSAHRFLKRCVFAGNLEACYTLGMIRF----YCLQNRSSGTSLMAKAAM-------KSHAPALYSLAVIQFNGSGGGKN 149 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~----~~~~d~~~A~~~~~~AA~-------~G~~~A~~~Lg~~y~~G~g~~~~ 149 (348)
...+++||+.+|+.|+..|++.+|.+|+ |+.+|.++|++||+.||+ +|++.|++.||.+|..|.+ +
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~---~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG---V 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC---C
Confidence 4689999999999999999999999998 599999999999999999 9999999999999999999 8
Q ss_pred cc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHh
Q 018965 150 EK-DLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSK 210 (348)
Q Consensus 150 ~~-d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~ 210 (348)
++ |..+|+.+|.+||+.|+++|+|.||.+|..|. .++|..+|.+||..||..|+..|+.+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~-~~~d~~~A~~yy~~Aa~~G~~~A~~~ 365 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGT-KERDYRRAFEYYSLAAKAGHILAIYR 365 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCC-ccccHHHHHHHHHHHHHcCChHHHHH
Confidence 88 99999999999999999999999999999999 67999999999999999999999997
No 5
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=99.43 E-value=3.1e-12 Score=109.75 Aligned_cols=121 Identities=18% Similarity=0.263 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHhhhhhh------hccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccC-------CCC
Q 018965 81 SDSAHRFLKRCVFAGNLEACYTLGMIRF------YCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGS-------GGG 147 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~------~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~-------g~~ 147 (348)
..+|.+.|+.|.+.+++.|+.++|++.. -...|..+|.+|+.+|.+.++..|.|.|..||..|. .+.
T Consensus 89 l~~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~ 168 (248)
T KOG4014|consen 89 LSKAIRPMKIACDANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPGE 168 (248)
T ss_pred HHHHHHHHHHHhccCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCCC
Confidence 7899999999999999999999999987 244578999999999999999999999999999881 111
Q ss_pred CCc----------cCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965 148 KNE----------KDLRAGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA 201 (348)
Q Consensus 148 ~~~----------~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~ 201 (348)
..| +|..+|+.+--+|.+.+++.|.-++..||..|.||++|..+|..|=.+|-+
T Consensus 169 g~p~~~~~~~~~~kDMdka~qfa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e 232 (248)
T KOG4014|consen 169 GKPLDRAELGSLSKDMDKALQFAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKE 232 (248)
T ss_pred CCCcchhhhhhhhHhHHHHHHHHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHH
Confidence 144 899999999999999999999999999999999999999999999888864
No 6
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=99.26 E-value=8.3e-11 Score=101.06 Aligned_cols=130 Identities=19% Similarity=0.216 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHH-HCCCHHHHHHhhhhhh----hccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965 81 SDSAHRFLKRCV-FAGNLEACYTLGMIRF----YCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRA 155 (348)
Q Consensus 81 ~~~A~~~~~kaA-~~G~~~A~~~Lg~~y~----~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~ 155 (348)
.++|.+.|++-. +.+++.++|.+|+.++ |...|+.+|++.|++|.+..+++|...+|++..+|.-......|..+
T Consensus 51 F~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~~aC~~~gLl~~~g~~~r~~dpd~~K 130 (248)
T KOG4014|consen 51 FQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIPQACRYLGLLHWNGEKDRKADPDSEK 130 (248)
T ss_pred HHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCHHHHhhhhhhhccCcCCccCCCCcHH
Confidence 578888888754 5789999999999988 67889999999999999999999999999999999755446778999
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhcc----------CCCC----------CCHHHHHHHHHHHHhcCCHHHHHh
Q 018965 156 GVALCARAASIGHVDAVRELGHCLQDG----------YGVR----------QNIEKGRRLLIEANAREFFQSVSK 210 (348)
Q Consensus 156 A~~~~~kAA~~G~~~A~~~Lg~~y~~G----------~Gv~----------~d~~~A~~w~~~Aa~~G~~~A~~~ 210 (348)
|.+++++|.+.++..|.++|..||..| .|.| +|..+|+.+--+|.+.+++.|-.+
T Consensus 131 a~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~~~~aCAN 205 (248)
T KOG4014|consen 131 AERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELDIPQACAN 205 (248)
T ss_pred HHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcCChHHHhh
Confidence 999999999999999999999999887 2556 999999999999999999999876
No 7
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....
Probab=98.89 E-value=6.4e-10 Score=71.69 Aligned_cols=34 Identities=56% Similarity=1.294 Sum_probs=29.1
Q ss_pred CCCCCccccccccCCCCCceeecChHHHHHhchhhchhcC
Q 018965 278 CGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKREC 317 (348)
Q Consensus 278 C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C 317 (348)
|++.. +.+|++|+.++|||++||+.||+. ||.+|
T Consensus 4 C~~~~-----~~~C~~C~~~~YCs~~Cq~~~w~~-Hk~~C 37 (37)
T PF01753_consen 4 CGKPA-----LKRCSRCKSVYYCSEECQRADWPY-HKFEC 37 (37)
T ss_dssp TSSCS-----SEEETTTSSSEESSHHHHHHHHHH-HCCTH
T ss_pred CCCCc-----CCcCCCCCCEEecCHHHHHHHHHH-HhhhC
Confidence 66633 359999999999999999999975 99876
No 8
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=98.62 E-value=6e-08 Score=61.52 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965 170 DAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF 204 (348)
Q Consensus 170 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~ 204 (348)
.|++.||.+|..|.|+++|..+|+.||++|+++|+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g~ 36 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELGN 36 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHccC
Confidence 45566666666666666666666666666665553
No 9
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=98.57 E-value=7.1e-08 Score=62.39 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=16.5
Q ss_pred HHHHHHH--HHHhccC-CCCCCHHHHHHHHHHHHhcC
Q 018965 170 DAVRELG--HCLQDGY-GVRQNIEKGRRLLIEANARE 203 (348)
Q Consensus 170 ~A~~~Lg--~~y~~G~-Gv~~d~~~A~~w~~~Aa~~G 203 (348)
+|++.|| .+|.+|. |+++|.++|++||++|+++|
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 3444444 4444444 44445555555555554444
No 10
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=98.52 E-value=1.5e-07 Score=60.87 Aligned_cols=36 Identities=36% Similarity=0.560 Sum_probs=32.8
Q ss_pred HHHHHHHH--HHHHccC-CCCCCccCHHHHHHHHHHHHhCCC
Q 018965 130 APALYSLA--VIQFNGS-GGGKNEKDLRAGVALCARAASIGH 168 (348)
Q Consensus 130 ~~A~~~Lg--~~y~~G~-g~~~~~~d~~~A~~~~~kAA~~G~ 168 (348)
++|+|.|| .+|..|. | +++|+++|++||++||++||
T Consensus 1 a~A~~~lg~~~~~~~g~~g---~~~d~~~A~~~~~~Aa~~g~ 39 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGG---VPKDYEKAFKWYEKAAEQGH 39 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTS---SCHHHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHhhhhccCC---ccccccchHHHHHHHHHccC
Confidence 57999999 8889999 6 99999999999999999986
No 11
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=98.52 E-value=1.5e-07 Score=59.61 Aligned_cols=36 Identities=33% Similarity=0.479 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCCC
Q 018965 130 APALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGH 168 (348)
Q Consensus 130 ~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G~ 168 (348)
+.|++.||.+|..|.| +++|..+|+.||++||++|+
T Consensus 1 ~~a~~~lg~~~~~G~g---~~~d~~~A~~~~~~Aa~~g~ 36 (36)
T smart00671 1 AEAQYNLGQMYEYGLG---VKKDLEKALEYYKKAAELGN 36 (36)
T ss_pred CHHHHHHHHHHHcCCC---CCcCHHHHHHHHHHHHHccC
Confidence 4689999999999999 99999999999999999985
No 12
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.22 E-value=1.8e-07 Score=85.53 Aligned_cols=44 Identities=41% Similarity=1.003 Sum_probs=37.1
Q ss_pred cccccCCCCCCCCccccccccCCCCCceeecChHHHHHhchhhchhcCCCC
Q 018965 270 LRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPP 320 (348)
Q Consensus 270 ~~~C~~~~C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C~~~ 320 (348)
...|+ .||.+.. -++|+.|+.+.||+++||+-||.. ||+.|+-+
T Consensus 319 ~~fCs--tCG~~ga----~KrCs~CKav~YCdqeCQk~hWf~-HKK~C~~L 362 (396)
T KOG1710|consen 319 CQFCS--TCGHPGA----KKRCSQCKAVAYCDQECQKFHWFI-HKKVCSFL 362 (396)
T ss_pred ccccc--ccCCCCc----cchhhhhHHHHHHHHHHHHhhhHH-HHHHHHHH
Confidence 34666 4776654 489999999999999999999998 99999865
No 13
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.88 E-value=0.00045 Score=61.54 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.++++..|+++.+. +|+++.+.||.+|. ...+.++|+..|++|.... ++...+.+|.++....| ..+..+|
T Consensus 55 ~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~-~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g----~~~~~~A 129 (198)
T PRK10370 55 PEAQLQALQDKIRANPQNSEQWALLGEYYL-WRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAG----QHMTPQT 129 (198)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC----CCCcHHH
Confidence 57788888887775 79999999999998 7889999999999999865 78899999986422222 1146899
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 018965 157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVS 209 (348)
Q Consensus 157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~ 209 (348)
...|+++.+. .++.+.+.||..+.. ..|+++|+.+|+++.+...+....
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~----~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFM----QADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCccH
Confidence 9999999876 589999999998875 569999999999998877765443
No 14
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.71 E-value=0.00092 Score=54.84 Aligned_cols=106 Identities=18% Similarity=0.050 Sum_probs=84.7
Q ss_pred HHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHH
Q 018965 87 FLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCAR 162 (348)
Q Consensus 87 ~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~k 162 (348)
.|+++.+. .+..+++.+|..++ ..++..+|..+|+++.+. .++.+.+.+|.+|.. ..++.+|..+|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-------~~~~~~A~~~~~~ 76 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-------LKEYEEAIDAYAL 76 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 34444444 36788899999888 567899999999998774 477899999999964 2368999999999
Q ss_pred HHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965 163 AASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF 204 (348)
Q Consensus 163 AA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~ 204 (348)
+.+. .++...+.+|.+|.. ..|.++|..+|+++.+...
T Consensus 77 ~~~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 77 AAALDPDDPRPYFHAAECLLA----LGEPESALKALDLAIEICG 116 (135)
T ss_pred HHhcCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcc
Confidence 8765 468899999998885 5689999999999987654
No 15
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.61 E-value=0.0077 Score=52.65 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=91.4
Q ss_pred cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHccCCCCCCccCH
Q 018965 80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK----SHAPALYSLAVIQFNGSGGGKNEKDL 153 (348)
Q Consensus 80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G~~~A~~~Lg~~y~~G~g~~~~~~d~ 153 (348)
..++|..+|+++.+. .++.+.+.+|.+|. ..++.++|+.+|+++.+. ......+.+|.+|.. ..++
T Consensus 80 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~ 151 (234)
T TIGR02521 80 ELEKAEDSFRRALTLNPNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK-------AGDF 151 (234)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH-------cCCH
Confidence 378999999998875 56788999999987 667999999999999874 356788899988853 2378
Q ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965 154 RAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 154 ~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
.+|..+|.++.+. .++.+.+.+|.+|.. ..+.++|..+++++.+.
T Consensus 152 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 152 DKAEKYLTRALQIDPQRPESLLELAELYYL----RGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHHhCcCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 9999999999875 467889999998875 56889999999998775
No 16
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0033 Score=61.74 Aligned_cols=109 Identities=15% Similarity=0.136 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
...|+.-|++|.+-. |-.|.|.||++|. +-.-+.=|+.+|++|.+. .++.-...||.||.. . -.+++|
T Consensus 380 t~AAi~sYRrAvdi~p~DyRAWYGLGQaYe-im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l------~~~~eA 451 (559)
T KOG1155|consen 380 THAAIESYRRAVDINPRDYRAWYGLGQAYE-IMKMHFYALYYFQKALELKPNDSRLWVALGECYEK-L------NRLEEA 451 (559)
T ss_pred cHHHHHHHHHHHhcCchhHHHHhhhhHHHH-HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-h------ccHHHH
Confidence 678999999999875 6679999999997 445566799999999875 578888899999953 2 257899
Q ss_pred HHHHHHHHhCCCH--HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965 157 VALCARAASIGHV--DAVRELGHCLQDGYGVRQNIEKGRRLLIEANA 201 (348)
Q Consensus 157 ~~~~~kAA~~G~~--~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~ 201 (348)
+..|.+|...|++ .+.+.||.+|++ -+|.++|..+|++-.+
T Consensus 452 iKCykrai~~~dte~~~l~~LakLye~----l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 452 IKCYKRAILLGDTEGSALVRLAKLYEE----LKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHH----HHhHHHHHHHHHHHHH
Confidence 9999999999988 899999999987 5688999999988765
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.58 E-value=0.0017 Score=65.81 Aligned_cols=110 Identities=19% Similarity=0.109 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.+-|+.-|++|.+. ..++|..+||..+- ...+..+|..+|.+|-.. .|++|+++||.+|..- | .++.|
T Consensus 302 ldlAI~~Ykral~~~P~F~~Ay~NlanALk-d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~-~------~~e~A 373 (966)
T KOG4626|consen 302 LDLAIDTYKRALELQPNFPDAYNNLANALK-DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ-G------KIEEA 373 (966)
T ss_pred HHHHHHHHHHHHhcCCCchHHHhHHHHHHH-hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-c------cchHH
Confidence 56677777777665 45777777777665 446677777777777654 3677777777777431 1 34667
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965 157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
..+|++|-+- +.+.|..+||.+|.+ .-++.+|+..|+.|..-
T Consensus 374 ~~ly~~al~v~p~~aaa~nNLa~i~kq----qgnl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 374 TRLYLKALEVFPEFAAAHNNLASIYKQ----QGNLDDAIMCYKEALRI 417 (966)
T ss_pred HHHHHHHHhhChhhhhhhhhHHHHHHh----cccHHHHHHHHHHHHhc
Confidence 7777776653 566677777777754 33566666666666443
No 18
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.58 E-value=0.002 Score=54.26 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=85.2
Q ss_pred HHHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHH
Q 018965 86 RFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARA 163 (348)
Q Consensus 86 ~~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kA 163 (348)
.+|+++.+.. |...+.+|..+. ..+++++|+..|+++... .++.+.+.+|.++.. .| ++++|..+|.+|
T Consensus 14 ~~~~~al~~~-p~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g------~~~~A~~~y~~A 84 (144)
T PRK15359 14 DILKQLLSVD-PETVYASGYASW-QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LK------EYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHcC-HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-Hh------hHHHHHHHHHHH
Confidence 4666665543 555777787776 678889999999998877 478899999988864 23 789999999999
Q ss_pred HhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHH
Q 018965 164 ASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQS 207 (348)
Q Consensus 164 A~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A 207 (348)
.+. +++.+.+++|.+|.. ..++++|+..|++|.......+
T Consensus 85 l~l~p~~~~a~~~lg~~l~~----~g~~~eAi~~~~~Al~~~p~~~ 126 (144)
T PRK15359 85 LMLDASHPEPVYQTGVCLKM----MGEPGLAREAFQTAIKMSYADA 126 (144)
T ss_pred HhcCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCh
Confidence 874 789999999998875 4588999999999987654433
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.52 E-value=0.0046 Score=59.94 Aligned_cols=110 Identities=17% Similarity=0.165 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHCC--C-----HHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCcc
Q 018965 81 SDSAHRFLKRCVFAG--N-----LEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEK 151 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G--~-----~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~ 151 (348)
.++|...+++..+.+ + ......+|.++. ..++.++|+.+|+++.+.. +..+.+.||.+|.. .|
T Consensus 157 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g------ 228 (389)
T PRK11788 157 WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL-ARGDLDAARALLKKALAADPQCVRASILLGDLALA-QG------ 228 (389)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-CC------
Confidence 566666666665532 1 123345555555 4556677777777765433 55666677766643 22
Q ss_pred CHHHHHHHHHHHHhCCC---HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965 152 DLRAGVALCARAASIGH---VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 152 d~~~A~~~~~kAA~~G~---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
++++|.++|+++.+.+. ..+...|+.+|.. ..+.++|..+++++.+.
T Consensus 229 ~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 229 DYAAAIEALERVEEQDPEYLSEVLPKLMECYQA----LGDEAEGLEFLRRALEE 278 (389)
T ss_pred CHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 56677777777765432 2345566665543 23666666666666554
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.50 E-value=0.0042 Score=54.36 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=93.4
Q ss_pred cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965 80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRA 155 (348)
Q Consensus 80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~ 155 (348)
..++|..+++++.+. .++.+.+.+|.+|. ..++.++|+.+|+++.+. .++.+.+++|.+|.. ..++.+
T Consensus 46 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-------~g~~~~ 117 (234)
T TIGR02521 46 DLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-------QGKYEQ 117 (234)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-------cccHHH
Confidence 378999999998765 57889999999988 678999999999999875 467899999999863 237899
Q ss_pred HHHHHHHHHhC----CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965 156 GVALCARAASI----GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF 204 (348)
Q Consensus 156 A~~~~~kAA~~----G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~ 204 (348)
|..+|+++.+. ......+.+|.+|.. ..+..+|..+|.++.....
T Consensus 118 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 166 (234)
T TIGR02521 118 AMQQFEQAIEDPLYPQPARSLENAGLCALK----AGDFDKAEKYLTRALQIDP 166 (234)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCc
Confidence 99999999874 456788889988864 5689999999999987643
No 21
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.47 E-value=0.0014 Score=66.40 Aligned_cols=109 Identities=21% Similarity=0.208 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.+.|+..|.+|+.. +++.+.-+||.+|. ...+.+.|+.-|++|.+.. .++|..+||..+-+ .| +..+|
T Consensus 268 ~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy-eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd-~G------~V~ea 339 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLRPNHAVAHGNLACIYY-EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD-KG------SVTEA 339 (966)
T ss_pred chHHHHHHHHHHhcCCcchhhccceEEEEe-ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh-cc------chHHH
Confidence 56677777776664 45666667777766 5678899999999998764 78999999988843 35 78999
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965 157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA 201 (348)
Q Consensus 157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~ 201 (348)
..+|.+|-.. .+++||++||.+|.. .-.+++|..+|++|-+
T Consensus 340 ~~cYnkaL~l~p~hadam~NLgni~~E----~~~~e~A~~ly~~al~ 382 (966)
T KOG4626|consen 340 VDCYNKALRLCPNHADAMNNLGNIYRE----QGKIEEATRLYLKALE 382 (966)
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHH----hccchHHHHHHHHHHh
Confidence 9999999886 689999999999975 2356789999998854
No 22
>PRK12370 invasion protein regulator; Provisional
Probab=97.37 E-value=0.004 Score=64.11 Aligned_cols=109 Identities=18% Similarity=0.113 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.++|...+++|.+. +++++.+.+|.++. ..++.++|+.+|++|.+.. ++.+.+.||.+|.. .| ++++|
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G------~~~eA 391 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AG------QLEEA 391 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CC------CHHHH
Confidence 45666666666654 45666666666655 4455666666666665543 45566666666543 22 45666
Q ss_pred HHHHHHHHhCC--CHHHHHHHHH-HHhccCCCCCCHHHHHHHHHHHHhc
Q 018965 157 VALCARAASIG--HVDAVRELGH-CLQDGYGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 157 ~~~~~kAA~~G--~~~A~~~Lg~-~y~~G~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
+.+|++|.+.. ++.+.+.++. .|.. .++++|+.+++++..+
T Consensus 392 i~~~~~Al~l~P~~~~~~~~~~~~~~~~-----g~~eeA~~~~~~~l~~ 435 (553)
T PRK12370 392 LQTINECLKLDPTRAAAGITKLWITYYH-----TGIDDAIRLGDELRSQ 435 (553)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhc-----cCHHHHHHHHHHHHHh
Confidence 66666666542 3333333332 3332 2456666666666543
No 23
>PRK12370 invasion protein regulator; Provisional
Probab=97.36 E-value=0.015 Score=59.81 Aligned_cols=112 Identities=17% Similarity=0.118 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhh--h------ccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCC
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRF--Y------CLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGK 148 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~--~------~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~ 148 (348)
.++|+..|++|.+. +++.++..||.+|. + ...+..+|+..+++|.+. +++.+...+|.++.. .|
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~-~g--- 352 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI-HS--- 352 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cc---
Confidence 45677777777664 36666777776554 1 223466777777777765 366677777766642 22
Q ss_pred CccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965 149 NEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE 203 (348)
Q Consensus 149 ~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G 203 (348)
++++|..+|++|.+. .++.+.+.||.+|.. ..+.++|+.+|++|.+..
T Consensus 353 ---~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~G~~~eAi~~~~~Al~l~ 402 (553)
T PRK12370 353 ---EYIVGSLLFKQANLLSPISADIKYYYGWNLFM----AGQLEEALQTINECLKLD 402 (553)
T ss_pred ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcC
Confidence 567777777777654 356677777776654 246677777777776543
No 24
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0046 Score=60.75 Aligned_cols=118 Identities=15% Similarity=0.107 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.++|+.+|++|...+ ...|.-.+|.=|. .=+|...|++-|++|.+-. +-.|.|.||.+|.. -+=+.-|
T Consensus 346 HEKAv~YFkRALkLNp~~~~aWTLmGHEyv-EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-------m~Mh~Ya 417 (559)
T KOG1155|consen 346 HEKAVMYFKRALKLNPKYLSAWTLMGHEYV-EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-------MKMHFYA 417 (559)
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHhhHHHH-HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-------hcchHHH
Confidence 799999999998864 6678888887776 5689999999999999876 67899999999963 2346889
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCH--HHHHh
Q 018965 157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFF--QSVSK 210 (348)
Q Consensus 157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~--~A~~~ 210 (348)
+.+|++|.+. .+..-...||.+|.. --.+++|++.|++|...|+. .|...
T Consensus 418 LyYfqkA~~~kPnDsRlw~aLG~CY~k----l~~~~eAiKCykrai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 418 LYYFQKALELKPNDSRLWVALGECYEK----LNRLEEAIKCYKRAILLGDTEGSALVR 471 (559)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHH----hccHHHHHHHHHHHHhccccchHHHHH
Confidence 9999999986 578888999999975 45789999999999999998 44443
No 25
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.34 E-value=0.005 Score=60.33 Aligned_cols=94 Identities=21% Similarity=0.210 Sum_probs=78.6
Q ss_pred cHHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHH--HHhCCCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965 80 WSDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAK--AAMKSHAPALYSLAVIQFNGSGGGKNEKDLRA 155 (348)
Q Consensus 80 ~~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~--AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~ 155 (348)
..++|..+|+.|.... -.+|.|++|+-+. ...+.++|+++|.+ +.-.++++-.++++.+|. .-.|+.+
T Consensus 505 d~dka~~~ykeal~ndasc~ealfniglt~e-~~~~ldeald~f~klh~il~nn~evl~qianiye-------~led~aq 576 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNIGLTAE-ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE-------LLEDPAQ 576 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHhcccHH-HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------HhhCHHH
Confidence 3899999999987654 4689999999987 56789999999865 667889999999999996 3468999
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHhc
Q 018965 156 GVALCARAASI--GHVDAVRELGHCLQD 181 (348)
Q Consensus 156 A~~~~~kAA~~--G~~~A~~~Lg~~y~~ 181 (348)
|++||.++... .++.-...||.+|..
T Consensus 577 aie~~~q~~slip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 577 AIELLMQANSLIPNDPAILSKLADLYDQ 604 (840)
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHhhc
Confidence 99999999875 678888888888843
No 26
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.34 E-value=0.0046 Score=64.41 Aligned_cols=112 Identities=10% Similarity=0.025 Sum_probs=81.6
Q ss_pred cHHHHHHHHHHHHHCC-----CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccC
Q 018965 80 WSDSAHRFLKRCVFAG-----NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKD 152 (348)
Q Consensus 80 ~~~~A~~~~~kaA~~G-----~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d 152 (348)
++++|+.+|+++.+.+ ++.+.+.+|.+|+ ..++.++|+.+|+++.+. +++.+.+.+|.+|.. .| +
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~-~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~-~g------~ 380 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKC-LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLE-LG------D 380 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-CC------C
Confidence 4677888888888754 4557777787776 567888888888888764 356677888887753 22 6
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965 153 LRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE 203 (348)
Q Consensus 153 ~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G 203 (348)
+++|+..|+++.+. .++.+.+.+|.+|.. ..|+++|+.+|++|.+..
T Consensus 381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHFI----KGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Confidence 78888888887765 467888888887764 457788888888887654
No 27
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.32 E-value=0.015 Score=48.88 Aligned_cols=90 Identities=16% Similarity=0.074 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.++|+..|+++... .++++.+.+|.++. ..+++++|+.+|++|.+. +++.+.+++|.+|.. .| ++++|
T Consensus 40 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-~g------~~~eA 111 (144)
T PRK15359 40 YSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-MG------EPGLA 111 (144)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cC------CHHHH
Confidence 67899999998886 68899999999987 678999999999999985 589999999999974 24 78999
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHH
Q 018965 157 VALCARAASI--GHVDAVRELGHC 178 (348)
Q Consensus 157 ~~~~~kAA~~--G~~~A~~~Lg~~ 178 (348)
+..|++|.+. +++....++|..
T Consensus 112 i~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 112 REAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHH
Confidence 9999999875 566666666653
No 28
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.27 E-value=0.018 Score=59.95 Aligned_cols=112 Identities=15% Similarity=0.134 Sum_probs=93.4
Q ss_pred cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965 80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRA 155 (348)
Q Consensus 80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~ 155 (348)
..++|+..|+++.+. .++++.+.+|.+|+ ..++.++|+.+|+++.+.. +..+.++||.+|.. .| ++.+
T Consensus 380 ~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~-~g------~~~e 451 (615)
T TIGR00990 380 DPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK-EG------SIAS 451 (615)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH-CC------CHHH
Confidence 378899999998776 57899999999988 6789999999999998764 67888999998863 33 7899
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965 156 GVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE 203 (348)
Q Consensus 156 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G 203 (348)
|+..|+++.+. .++.+.+.+|.+|.. ..++++|+..|++|.+..
T Consensus 452 A~~~~~~al~~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 452 SMATFRRCKKNFPEAPDVYNYYGELLLD----QNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcC
Confidence 99999998764 568899999998876 458999999999998764
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.22 E-value=0.007 Score=66.22 Aligned_cols=114 Identities=15% Similarity=0.035 Sum_probs=89.1
Q ss_pred cHHHHHHHHHHHHHCC-CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 80 WSDSAHRFLKRCVFAG-NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 80 ~~~~A~~~~~kaA~~G-~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
..++|+.+|+++.+.. ++++.+++|.++. ..++.++|+.+|++|.+.. ++.+.++||..+.. .| +.++|
T Consensus 591 r~~eAl~~~~~AL~l~P~~~a~~~LA~~l~-~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G------~~eeA 662 (987)
T PRK09782 591 QPELALNDLTRSLNIAPSANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SG------DIAQS 662 (987)
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CC------CHHHH
Confidence 3778888888887643 4778888888877 5678888889998888764 78888888877754 23 67889
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCH
Q 018965 157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFF 205 (348)
Q Consensus 157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~ 205 (348)
+..|++|.+. +++.+.++||.+|.. ..|+++|+..|++|.+..-.
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~----lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQR----LDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCC
Confidence 9999998875 688899999998865 45888999999998766543
No 30
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.18 E-value=0.0075 Score=47.65 Aligned_cols=95 Identities=18% Similarity=0.154 Sum_probs=76.9
Q ss_pred HHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--C--
Q 018965 97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--H---APALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--G-- 167 (348)
Q Consensus 97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~---~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G-- 167 (348)
++.+|.+|..+. ..++.++|+..|+++.+.. + +.+.+.+|.+|.. ..++.+|+.+|+++... +
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVL-KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-------QGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred cHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-------hccHHHHHHHHHHHHHHCCCCC
Confidence 567888888887 6789999999999998753 2 5689999999964 23789999999998864 2
Q ss_pred -CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965 168 -HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE 203 (348)
Q Consensus 168 -~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G 203 (348)
.+.+.+.+|.+|.. ..+..+|..+|.++.+..
T Consensus 74 ~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 74 KAPDALLKLGMSLQE----LGDKEKAKATLQQVIKRY 106 (119)
T ss_pred cccHHHHHHHHHHHH----hCChHHHHHHHHHHHHHC
Confidence 26789999999875 568899999999987753
No 31
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.18 E-value=0.0058 Score=52.81 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=72.8
Q ss_pred CCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--
Q 018965 94 AGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-----HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI-- 166 (348)
Q Consensus 94 ~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-----~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~-- 166 (348)
.+.+.+.+.+|..|. ..++.++|+.+|++|.+.. .+.+.+.||.+|.. .| ++++|+.+|++|.+.
T Consensus 32 ~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g------~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 32 AKEAFVYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NG------EHDKALEYYHQALELNP 103 (172)
T ss_pred hhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCc
Confidence 466778889998887 6789999999999998653 24688999999864 33 789999999999875
Q ss_pred CCHHHHHHHHHHHhc-cC--CCCCCHHHHHHHHHHHH
Q 018965 167 GHVDAVRELGHCLQD-GY--GVRQNIEKGRRLLIEAN 200 (348)
Q Consensus 167 G~~~A~~~Lg~~y~~-G~--Gv~~d~~~A~~w~~~Aa 200 (348)
.+..+.+.+|.+|.. |. --..+.++|...|.+|.
T Consensus 104 ~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~ 140 (172)
T PRK02603 104 KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAA 140 (172)
T ss_pred ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHH
Confidence 578888889988754 21 11235555555555554
No 32
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.10 E-value=0.017 Score=54.65 Aligned_cols=113 Identities=12% Similarity=0.000 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.++|...|+++.+. .++++.+.+|.+|. ..++.++|+..|++|.+. ++..+.+++|.+|... | ++++|
T Consensus 80 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~-g------~~~eA 151 (296)
T PRK11189 80 RALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG-G------RYELA 151 (296)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-C------CHHHH
Confidence 56777777777664 46777788887776 566777888888877664 4677777788777542 2 56778
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965 157 VALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF 204 (348)
Q Consensus 157 ~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~ 204 (348)
+..|+++.+....+....+...+. ....+..+|...|.+++...+
T Consensus 152 ~~~~~~al~~~P~~~~~~~~~~l~---~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 152 QDDLLAFYQDDPNDPYRALWLYLA---ESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHH---HccCCHHHHHHHHHHHHhhCC
Confidence 888888777643333222222111 123467778887777665444
No 33
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.08 E-value=0.017 Score=54.49 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHC------CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccC
Q 018965 81 SDSAHRFLKRCVFA------GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKD 152 (348)
Q Consensus 81 ~~~A~~~~~kaA~~------G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d 152 (348)
.+.++.-+.+..+. +.+...|.+|.+|. ..++..+|+..|++|.+. .++.+.+.+|..|.. ..+
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-------~g~ 113 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYD-SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-------AGN 113 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-------CCC
Confidence 45556666665542 33667888888887 567788888888888765 467888888888753 237
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965 153 LRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF 204 (348)
Q Consensus 153 ~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~ 204 (348)
+++|...|.+|.+. .+..+.+++|.+|.. ..++++|+..|+++.+...
T Consensus 114 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~----~g~~~eA~~~~~~al~~~P 163 (296)
T PRK11189 114 FDAAYEAFDSVLELDPTYNYAYLNRGIALYY----GGRYELAQDDLLAFYQDDP 163 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCC
Confidence 88888888888765 578888888887765 3477888888888877653
No 34
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.92 E-value=0.037 Score=47.71 Aligned_cols=109 Identities=16% Similarity=0.104 Sum_probs=72.6
Q ss_pred cHHHHHHHHHHHHHCC-----CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccC
Q 018965 80 WSDSAHRFLKRCVFAG-----NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKD 152 (348)
Q Consensus 80 ~~~~A~~~~~kaA~~G-----~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d 152 (348)
..++|+.+|+++.+.. .+.+.+.+|.++. ..++.++|+.+|++|.+. .++.+.+.+|.+|..-.-...-..+
T Consensus 50 ~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 50 EYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGD 128 (172)
T ss_pred CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhC
Confidence 3789999999998653 2468999999998 578999999999999986 5688999999988642110001235
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhccC-CCCCCHHHHHHHHHHHHh
Q 018965 153 LRAGVALCARAASIGHVDAVRELGHCLQDGY-GVRQNIEKGRRLLIEANA 201 (348)
Q Consensus 153 ~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~-Gv~~d~~~A~~w~~~Aa~ 201 (348)
..+|...|.+|.+ ++.... --+.|+..+..|+..+.+
T Consensus 129 ~~~A~~~~~~A~~------------~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 129 QDEAEALFDKAAE------------YWKQAIRLAPNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHHHHH------------HHHHHHhhCchhHHHHHHHHHhcCc
Confidence 6666666655532 111111 125556667777766544
No 35
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.92 E-value=0.0033 Score=45.35 Aligned_cols=63 Identities=29% Similarity=0.356 Sum_probs=39.0
Q ss_pred CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh
Q 018965 96 NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS 165 (348)
Q Consensus 96 ~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~ 165 (348)
++...+.+|.+++ ..+++++|+.+|++|.+.. ++.+.+++|.+|..- | +++.+|+..|++|.+
T Consensus 2 ~a~~~~~~g~~~~-~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~-~-----~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYF-QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKL-G-----KDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHT-T-----THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-C-----ccHHHHHHHHHHHHH
Confidence 4556666676666 4666777777777776553 466667777776531 1 246666666666653
No 36
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.88 E-value=0.066 Score=60.05 Aligned_cols=118 Identities=19% Similarity=0.127 Sum_probs=89.4
Q ss_pred CcHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCC--HHH--------------HHHHHHHH
Q 018965 79 NWSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSH--APA--------------LYSLAVIQ 140 (348)
Q Consensus 79 ~~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~--~~A--------------~~~Lg~~y 140 (348)
...++|+..|+++.+. .++++.+.||.+|+ ..++.++|+.+|++|.+..- ..+ ...+|..+
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYS-QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 3478999999998885 68999999999998 67899999999999987542 111 11234444
Q ss_pred HccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc--CCHHHH
Q 018965 141 FNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR--EFFQSV 208 (348)
Q Consensus 141 ~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~--G~~~A~ 208 (348)
. ...++++|...|+++.+. .++.+.+.||.+|.. ..+.++|+.+|++|.+. ++..+.
T Consensus 362 ~-------~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~----~g~~~eA~~~y~~aL~~~p~~~~a~ 422 (1157)
T PRK11447 362 L-------KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMA----RKDYAAAERYYQQALRMDPGNTNAV 422 (1157)
T ss_pred H-------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3 123789999999999875 678899999998875 56899999999998764 344443
No 37
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.87 E-value=0.022 Score=63.82 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHccCCCC---------
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAM--KSHAPALYSLAVIQFNGSGGG--------- 147 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~--~G~~~A~~~Lg~~y~~G~g~~--------- 147 (348)
.++|...|+++.+. .++.+.+.||.+|. ..++.++|+.+|+++.+ -++..+...|+.+|..+....
T Consensus 367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~ 445 (1157)
T PRK11447 367 LAQAERLYQQARQVDNTDSYAVLGLGDVAM-ARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLS 445 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 78899999998876 67889999999998 67899999999999987 457888888888875321000
Q ss_pred --------------------------CCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 018965 148 --------------------------KNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEA 199 (348)
Q Consensus 148 --------------------------~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~A 199 (348)
....+.++|+.+|++|.+. .++.+.+.||.+|.. ..+.++|+..|+++
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~----~G~~~~A~~~l~~a 521 (1157)
T PRK11447 446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ----AGQRSQADALMRRL 521 (1157)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Confidence 0024678999999999875 578899999998876 45899999999998
Q ss_pred Hhc
Q 018965 200 NAR 202 (348)
Q Consensus 200 a~~ 202 (348)
.+.
T Consensus 522 l~~ 524 (1157)
T PRK11447 522 AQQ 524 (1157)
T ss_pred HHc
Confidence 764
No 38
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.79 E-value=0.031 Score=54.14 Aligned_cols=113 Identities=21% Similarity=0.148 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHCCC------HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccC
Q 018965 81 SDSAHRFLKRCVFAGN------LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKD 152 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G~------~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d 152 (348)
.++|+..++++.+.++ ..+.+.||.+|. ..++.++|+.+|+++.+. .+..+...|+.+|.. . .+
T Consensus 85 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~------g~ 156 (389)
T PRK11788 85 VDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL-KAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ-E------KD 156 (389)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH-h------ch
Confidence 6788888888777643 246777788877 667888899999888864 356677888888753 2 37
Q ss_pred HHHHHHHHHHHHhCCCH-------HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCH
Q 018965 153 LRAGVALCARAASIGHV-------DAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFF 205 (348)
Q Consensus 153 ~~~A~~~~~kAA~~G~~-------~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~ 205 (348)
+++|.++|+++.+.+.. .....||.+|.. ..+.++|..+|+++.+....
T Consensus 157 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~ 212 (389)
T PRK11788 157 WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA----RGDLDAARALLKKALAADPQ 212 (389)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhHCcC
Confidence 78888888888776432 133456666664 68899999999999876543
No 39
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.76 E-value=0.014 Score=42.36 Aligned_cols=91 Identities=19% Similarity=0.186 Sum_probs=67.2
Q ss_pred HHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHH
Q 018965 99 ACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRE 174 (348)
Q Consensus 99 A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~ 174 (348)
+++.+|.++. ..++..+|+.+|+++.+.. ++.+.+.+|.+|.. ..++.+|..+|.++... .+..+.+.
T Consensus 2 ~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 73 (100)
T cd00189 2 ALLNLGNLYY-KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-------LGKYEEALEDYEKALELDPDNAKAYYN 73 (100)
T ss_pred HHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhCCCcchhHHHH
Confidence 4667777776 5678888999999887654 34678888888864 23678899999988765 34567788
Q ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965 175 LGHCLQDGYGVRQNIEKGRRLLIEANA 201 (348)
Q Consensus 175 Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~ 201 (348)
+|.++.. ..+.++|..++.++.+
T Consensus 74 ~~~~~~~----~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 74 LGLAYYK----LGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHH----HHhHHHHHHHHHHHHc
Confidence 8887765 3467888888887754
No 40
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.74 E-value=0.026 Score=48.18 Aligned_cols=94 Identities=14% Similarity=0.098 Sum_probs=61.0
Q ss_pred HHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHH
Q 018965 98 EACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVR 173 (348)
Q Consensus 98 ~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~ 173 (348)
+..|.+|..+. ..++.+.|...|+-...-. ++...|+||.++. ...++.+|++.|.+|... .++.+.+
T Consensus 36 ~~lY~~A~~ly-~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-------~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 36 NTLYRYAMQLM-EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ-------AQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 34455555444 4566777777777766555 4556667777774 234677777777777754 5777777
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965 174 ELGHCLQDGYGVRQNIEKGRRLLIEANARE 203 (348)
Q Consensus 174 ~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G 203 (348)
++|.+|.. -.|.+.|++-|+.|.+.-
T Consensus 108 ~ag~c~L~----lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLA----CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHHh
Confidence 77777765 346677777777776554
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.61 E-value=0.0091 Score=60.83 Aligned_cols=112 Identities=18% Similarity=0.146 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.+.|++.|++|... +...|+-.+|.=+. ...+.++|..+|++|..-. |..|+|-||++|+.- .-++.|
T Consensus 437 h~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kq-------ek~e~A 508 (638)
T KOG1126|consen 437 HDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQ-------EKLEFA 508 (638)
T ss_pred HHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheecc-------chhhHH
Confidence 78999999998765 45667777776555 5667899999999998664 788999999999642 246889
Q ss_pred HHHHHHHHhCC--CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965 157 VALCARAASIG--HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF 204 (348)
Q Consensus 157 ~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~ 204 (348)
...|+||.+-. +..-+..+|.+|.. -+..++|+.+|++|.....
T Consensus 509 e~~fqkA~~INP~nsvi~~~~g~~~~~----~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 509 EFHFQKAVEINPSNSVILCHIGRIQHQ----LKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred HHHHHhhhcCCccchhHHhhhhHHHHH----hhhhhHHHHHHHHHHhcCC
Confidence 99999999864 55566777887775 5678899999999986654
No 42
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.55 E-value=0.029 Score=54.52 Aligned_cols=90 Identities=17% Similarity=0.100 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.++|+..|++|.+. +++.+++.+|.+|+ ..++++.|+..+++|.+. .++.+++.+|.+|.. .| ++.+|
T Consensus 18 ~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg------~~~eA 89 (356)
T PLN03088 18 FALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LE------EYQTA 89 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hC------CHHHH
Confidence 45566666665554 35556666666655 345566666666666543 345566666655542 22 55666
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHH
Q 018965 157 VALCARAASI--GHVDAVRELGHC 178 (348)
Q Consensus 157 ~~~~~kAA~~--G~~~A~~~Lg~~ 178 (348)
..+|+++.+. ++..++..++.+
T Consensus 90 ~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 90 KAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6666666554 344444444443
No 43
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.50 E-value=0.038 Score=53.72 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=78.4
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 018965 103 LGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHC 178 (348)
Q Consensus 103 Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~ 178 (348)
.|...+ ..+++.+|+..|++|.+.. ++.+.+++|.+|.. .| ++.+|+..+++|.+. .++.+.+.+|.+
T Consensus 8 ~a~~a~-~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g------~~~eAl~~~~~Al~l~P~~~~a~~~lg~~ 79 (356)
T PLN03088 8 KAKEAF-VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LG------NFTEAVADANKAIELDPSLAKAYLRKGTA 79 (356)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 344444 6789999999999998764 78999999999964 33 789999999999875 689999999998
Q ss_pred HhccCCCCCCHHHHHHHHHHHHhcC--CHHHHHh
Q 018965 179 LQDGYGVRQNIEKGRRLLIEANARE--FFQSVSK 210 (348)
Q Consensus 179 y~~G~Gv~~d~~~A~~w~~~Aa~~G--~~~A~~~ 210 (348)
|.. ..++.+|+.+|++|.+.. ++.++..
T Consensus 80 ~~~----lg~~~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 80 CMK----LEEYQTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHH----hCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 875 569999999999999875 4555543
No 44
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.45 E-value=0.027 Score=45.96 Aligned_cols=79 Identities=14% Similarity=0.018 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.++|..+|+++.+. .++.+.+.+|.+|. ..++..+|+.+|+++.+.+ ++...+.+|.+|.. . .+.++|
T Consensus 33 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~------g~~~~A 104 (135)
T TIGR02552 33 YDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA-L------GEPESA 104 (135)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-c------CCHHHH
Confidence 78899999998774 57899999999998 5678899999999997665 57899999999974 2 379999
Q ss_pred HHHHHHHHhCC
Q 018965 157 VALCARAASIG 167 (348)
Q Consensus 157 ~~~~~kAA~~G 167 (348)
+.+|+++.+..
T Consensus 105 ~~~~~~al~~~ 115 (135)
T TIGR02552 105 LKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHhc
Confidence 99999998764
No 45
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.45 E-value=0.06 Score=46.12 Aligned_cols=96 Identities=13% Similarity=0.038 Sum_probs=67.6
Q ss_pred HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--C---CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCH
Q 018965 97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--S---HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHV 169 (348)
Q Consensus 97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G---~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~ 169 (348)
..+.+.+|..+. ...++++|+.+|++|... + .+.+.++||.+|.. ..+.++|+..|++|.+. .+.
T Consensus 35 a~~~~~~g~~~~-~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-------~g~~~eA~~~~~~Al~~~~~~~ 106 (168)
T CHL00033 35 AFTYYRDGMSAQ-SEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-------NGEHTKALEYYFQALERNPFLP 106 (168)
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCcCcH
Confidence 456677888777 567899999999999755 3 23588999999964 23678999999998864 567
Q ss_pred HHHHHHHHHHhc-cC--CCCCCHHHHHHHHHHHH
Q 018965 170 DAVRELGHCLQD-GY--GVRQNIEKGRRLLIEAN 200 (348)
Q Consensus 170 ~A~~~Lg~~y~~-G~--Gv~~d~~~A~~w~~~Aa 200 (348)
.+..++|.+|.. |. ....|..+|..+|.+|.
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 788888887752 20 12345565555555553
No 46
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.45 E-value=0.059 Score=57.00 Aligned_cols=59 Identities=10% Similarity=0.022 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHCC-CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Q 018965 81 SDSAHRFLKRCVFAG-NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQ 140 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G-~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y 140 (348)
.++|..+|+++.+.+ +....+.++.++. ..++.++|+++++++.+. .++.+.+.+|.+|
T Consensus 719 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 780 (899)
T TIGR02917 719 YPAAIQAYRKALKRAPSSQNAIKLHRALL-ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELY 780 (899)
T ss_pred HHHHHHHHHHHHhhCCCchHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 455555555554432 2234444444443 233444444444444332 2344444444444
No 47
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.40 E-value=0.18 Score=53.26 Aligned_cols=110 Identities=17% Similarity=0.154 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.++|..+|.++.+. ++....+.++.+|. ..++.++|+.+|+++.+. .++.+.+.||.+|.. .| ++++|
T Consensus 549 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~------~~~~A 620 (899)
T TIGR02917 549 EEEAVAWLEKAAELNPQEIEPALALAQYYL-GKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA-AG------DLNKA 620 (899)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-cC------CHHHH
Confidence 66777777776554 34556666666665 456777777777777653 356677777777753 12 56777
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965 157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
+.+|+++.+. .++.+.+.+|.+|.. ..+.++|..+|+++.+.
T Consensus 621 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~ 664 (899)
T TIGR02917 621 VSSFKKLLALQPDSALALLLLADAYAV----MKNYAKAITSLKRALEL 664 (899)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHhc
Confidence 7777777653 456677777777654 34677777777776654
No 48
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=96.35 E-value=0.0021 Score=43.22 Aligned_cols=42 Identities=29% Similarity=0.621 Sum_probs=33.7
Q ss_pred CCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHhccCCchhhc
Q 018965 20 FDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLS 66 (348)
Q Consensus 20 ~~~l~~d~l~~il~~~a~~~~s~~d~~~~~l~~k~~~~~~~~~~~l~ 66 (348)
++.||+|++..||..+ ++.|+.++..+||.|+....++..+.
T Consensus 1 i~~LP~Eil~~If~~L-----~~~dl~~~~~vcr~w~~~~~~~~lW~ 42 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYL-----DPRDLLRLSLVCRRWRRIANDNSLWR 42 (47)
T ss_dssp CCCS-HHHHHHHHTTS------HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred ChHhHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHCChhhhh
Confidence 4679999999999765 56799999999999999987765443
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.33 E-value=0.039 Score=51.30 Aligned_cols=107 Identities=15% Similarity=0.110 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSS---GTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRA 155 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~---A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~ 155 (348)
.++|+..|+++.+. +|+++...|+.++. ..++..+ ++.-+.+.. ..++.-...||..|.. .| ++++
T Consensus 162 ~~~A~~~~~~al~~~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~-lg------~~~~ 232 (280)
T PF13429_consen 162 PDKALRDYRKALELDPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQ-LG------RYEE 232 (280)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHH-HT-------HHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcc-cc------cccc
Confidence 67888888887775 45677777776665 3334444 444444444 3355566677777753 22 5678
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 018965 156 GVALCARAAS--IGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEAN 200 (348)
Q Consensus 156 A~~~~~kAA~--~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa 200 (348)
|+.||+++.. .+++..+..+|.++.. ....++|...++++.
T Consensus 233 Al~~~~~~~~~~p~d~~~~~~~a~~l~~----~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 233 ALEYLEKALKLNPDDPLWLLAYADALEQ----AGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHT--------------------
T ss_pred cccccccccccccccccccccccccccc----ccccccccccccccc
Confidence 8888888776 4678888888877764 335566777666664
No 50
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.30 E-value=0.091 Score=55.31 Aligned_cols=59 Identities=8% Similarity=-0.048 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHH----HHHHHHHHHHhC--CCHHHHHHHHHHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRS----SGTSLMAKAAMK--SHAPALYSLAVIQ 140 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~----~A~~~~~~AA~~--G~~~A~~~Lg~~y 140 (348)
.++|...|+++.+. +++.+.+.||.+|. ..++.+ +|+.+|++|.+. +++.+...||.+|
T Consensus 228 ~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~-~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 294 (656)
T PRK15174 228 YQEAIQTGESALARGLDGAALRRSLGLAYY-QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADAL 294 (656)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 44455555554443 34455555555544 111111 345555544433 2344444554444
No 51
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.26 E-value=0.19 Score=52.87 Aligned_cols=108 Identities=8% Similarity=0.021 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.++|...|+++.+. +++++++.+|.++. ..++.++|+..|+++.+. +++.+.+.+|.+|.. .| ++++|
T Consensus 92 ~~~A~~~l~~~l~~~P~~~~a~~~la~~l~-~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~-~g------~~~eA 163 (656)
T PRK15174 92 PDAVLQVVNKLLAVNVCQPEDVLLVASVLL-KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVL-MD------KELQA 163 (656)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CC------ChHHH
Confidence 77888888887775 68888888888887 567888899999888874 577788888888753 23 66778
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965 157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA 201 (348)
Q Consensus 157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~ 201 (348)
...|+++... +++.+.+.++.++.. .+.++|...|+++..
T Consensus 164 ~~~~~~~~~~~P~~~~a~~~~~~l~~~-----g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 164 ISLARTQAQEVPPRGDMIATCLSFLNK-----SRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHc-----CCHHHHHHHHHHHHh
Confidence 7777766543 456666555444433 245555555554433
No 52
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.18 E-value=0.019 Score=41.24 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965 129 HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA 201 (348)
Q Consensus 129 ~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~ 201 (348)
++...+.+|.+|.. ..|+++|+.+|++|.+. .++.+.+++|.+|..-. ++.++|+..|++|.+
T Consensus 2 ~a~~~~~~g~~~~~-------~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~---~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQ-------QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG---KDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHH-------TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT---THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHH
Confidence 56788999999975 34899999999999875 57899999999987621 379999999999975
No 53
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.16 E-value=0.091 Score=55.52 Aligned_cols=115 Identities=13% Similarity=-0.055 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.++|..||+.+.+. .+..|..+++.+.. -.+-.++|+.+++++.... ++.+++.+|.++.. .| .+++|
T Consensus 102 ~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~-~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~-~g------~~~~A 173 (694)
T PRK15179 102 SDEGLAVWRGIHQRFPDSSEAFILMLRGVK-RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDE-IG------QSEQA 173 (694)
T ss_pred cHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-hc------chHHH
Confidence 78999999999886 78999999999987 6778999999999998775 88999999988843 44 67999
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHH
Q 018965 157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQS 207 (348)
Q Consensus 157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A 207 (348)
.+.|+++..+ +++.++..+|..+.. .-+.++|..-|++|.+.--+.+
T Consensus 174 ~~~y~~~~~~~p~~~~~~~~~a~~l~~----~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 174 DACFERLSRQHPEFENGYVGWAQSLTR----RGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhCcch
Confidence 9999999965 468999999998875 3378899999999987765544
No 54
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.12 E-value=0.026 Score=55.54 Aligned_cols=81 Identities=12% Similarity=0.219 Sum_probs=68.3
Q ss_pred ccCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHH--HHhCCCHHHHHHHHHHHhccCCC
Q 018965 110 CLQNRSSGTSLMAKAAMKSH--APALYSLAVIQFNGSGGGKNEKDLRAGVALCAR--AASIGHVDAVRELGHCLQDGYGV 185 (348)
Q Consensus 110 ~~~d~~~A~~~~~~AA~~G~--~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~k--AA~~G~~~A~~~Lg~~y~~G~Gv 185 (348)
...|.++|.++|+.|..+.. .+|.|++|.-|.. .| ++++|+++|.| +.-..+++-.+.++.+|+.
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~-~~------~ldeald~f~klh~il~nn~evl~qianiye~---- 570 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEA-LG------NLDEALDCFLKLHAILLNNAEVLVQIANIYEL---- 570 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHH-hc------CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----
Confidence 45699999999999998764 6899999988853 33 78999999987 5567999999999999985
Q ss_pred CCCHHHHHHHHHHHHh
Q 018965 186 RQNIEKGRRLLIEANA 201 (348)
Q Consensus 186 ~~d~~~A~~w~~~Aa~ 201 (348)
-.|..+|++||.+|..
T Consensus 571 led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 571 LEDPAQAIELLMQANS 586 (840)
T ss_pred hhCHHHHHHHHHHhcc
Confidence 5699999999999864
No 55
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.07 E-value=0.16 Score=54.14 Aligned_cols=119 Identities=12% Similarity=0.133 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHCC-----CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHccCCCCCCccC
Q 018965 81 SDSAHRFLKRCVFAG-----NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS---HAPALYSLAVIQFNGSGGGKNEKD 152 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G-----~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G---~~~A~~~Lg~~y~~G~g~~~~~~d 152 (348)
++.+..+..-+...- -+++.|.+|.+|. ...|+++|+.||.+|.... +.-+.+.||.||.. .| |
T Consensus 286 y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H-a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~-~~------d 357 (1018)
T KOG2002|consen 286 YERVWHLAEHAIKNTENKSIKAESFYQLGRSYH-AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIK-RG------D 357 (1018)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHccCCCCccccccchhHHHHH-hc------h
Confidence 566666666555433 3567999999998 7889999999998887553 36789999999974 23 7
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHH
Q 018965 153 LRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQS 207 (348)
Q Consensus 153 ~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A 207 (348)
++.+...|++..++ ++.+.+.-||.+|..-.-.+.-..+|..++.++-++-+..+
T Consensus 358 le~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~ 414 (1018)
T KOG2002|consen 358 LEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS 414 (1018)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH
Confidence 88999999999875 78999999999997642223344566666666666654433
No 56
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.03 E-value=0.0013 Score=65.33 Aligned_cols=44 Identities=27% Similarity=0.699 Sum_probs=34.6
Q ss_pred CccccccCCCCCCCCccccccccCCCCCceeecChHHHHHhchhhchhcCCCCC
Q 018965 268 NGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPL 321 (348)
Q Consensus 268 ~~~~~C~~~~C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C~~~~ 321 (348)
....=|.| |..... ..| |-.+.|||.+||+.||+. |+..|+.-+
T Consensus 525 KkKQWC~n--C~~EAi-----y~C--CWNTSYCsveCQQ~HW~~-H~ksCrrk~ 568 (588)
T KOG3612|consen 525 KKKQWCYN--CLDEAI-----YHC--CWNTSYCSVECQQGHWPE-HRKSCRRKK 568 (588)
T ss_pred HHHHHHHh--hhHHHH-----HHh--hccccccCcchhhccchh-HhhhhcccC
Confidence 44456886 766544 445 889999999999999995 999998765
No 57
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.98 E-value=0.13 Score=42.01 Aligned_cols=93 Identities=23% Similarity=0.150 Sum_probs=65.2
Q ss_pred HHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCH-----HHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--C--
Q 018965 97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHA-----PALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--G-- 167 (348)
Q Consensus 97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~-----~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G-- 167 (348)
|++.|.++.++- .-++.++|+.+|++|.+.|-. .+...||..|.+ .| .+++|+.+|+++.+. +
T Consensus 1 ~~~~~~~A~a~d-~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG------~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 1 PRALYELAWAHD-SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LG------RYDEALALLEEALEEFPDDE 72 (120)
T ss_pred CchHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHHCCCcc
Confidence 356788888776 566788899999998888733 466677777753 44 678888888888765 2
Q ss_pred -CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965 168 -HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA 201 (348)
Q Consensus 168 -~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~ 201 (348)
+......++..+.+ ....++|+.|+..+..
T Consensus 73 ~~~~l~~f~Al~L~~----~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 73 LNAALRVFLALALYN----LGRPKEALEWLLEALA 103 (120)
T ss_pred ccHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence 44555666665443 3366788888887765
No 58
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.94 E-value=0.12 Score=48.20 Aligned_cols=97 Identities=14% Similarity=0.178 Sum_probs=77.3
Q ss_pred CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC---
Q 018965 95 GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--H---APALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--- 166 (348)
Q Consensus 95 G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~---~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--- 166 (348)
++..+.|..+.-++...+++.+|+.-|++..+.- + +.|+|.||.+|+. ..|+.+|+..|++..+.
T Consensus 140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-------~g~~~~A~~~f~~vv~~yP~ 212 (263)
T PRK10803 140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-------KGKKDDAAYYFASVVKNYPK 212 (263)
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHCCC
Confidence 4456777777755324578999999999988752 2 5799999999974 34899999999999963
Q ss_pred --CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965 167 --GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 167 --G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
-.++|++.+|.+|.. ..|..+|...|++..+.
T Consensus 213 s~~~~dAl~klg~~~~~----~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 213 SPKAADAMFKVGVIMQD----KGDTAKAKAVYQQVIKK 246 (263)
T ss_pred CcchhHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 368999999999975 35999999999988764
No 59
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.83 E-value=0.032 Score=39.66 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=37.1
Q ss_pred HhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh
Q 018965 102 TLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS 165 (348)
Q Consensus 102 ~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~ 165 (348)
.+|..++ ..+++++|+..|+++.+.. ++.+.+.||.++.. .| ++++|+.+|+++.+
T Consensus 2 ~~a~~~~-~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g------~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 2 ALARALY-QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QG------RYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHH-HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHH
T ss_pred hHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHH
Confidence 4555555 5667777777777777665 66777777777762 23 66777777777754
No 60
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.77 E-value=0.19 Score=53.86 Aligned_cols=108 Identities=11% Similarity=-0.006 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.++|...|+++.+. +++++.+.|+.++. ..++..+|+..++++.+. .++. .+.||.+|.. .| +..+|
T Consensus 65 ~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-~g------~~~~A 135 (765)
T PRK10049 65 WQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-AG------RHWDE 135 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-CC------CHHHH
Confidence 67999999998765 68999999999887 678899999999998875 3677 8899988863 23 78999
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965 157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA 201 (348)
Q Consensus 157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~ 201 (348)
+..|+++.+. +++.+.+.++.++..+ ...++|+..++++..
T Consensus 136 l~~l~~al~~~P~~~~~~~~la~~l~~~----~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 136 LRAMTQALPRAPQTQQYPTEYVQALRNN----RLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHC----CChHHHHHHHHhCCC
Confidence 9999999875 6889999999988864 566789988887775
No 61
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=95.73 E-value=0.23 Score=54.58 Aligned_cols=119 Identities=17% Similarity=0.137 Sum_probs=87.1
Q ss_pred cHHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 80 WSDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-HAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 80 ~~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
..++|..+|+++.+.. +....+.++.... ..++.++|+.+|++|.+.. ++.+.+++|.++.. .| ++++|
T Consensus 557 d~~eA~~~l~qAL~l~P~~~~l~~~La~~l~-~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~-lG------~~deA 628 (987)
T PRK09782 557 NGAARDRWLQQAEQRGLGDNALYWWLHAQRY-IPGQPELALNDLTRSLNIAPSANAYVARATIYRQ-RH------NVPAA 628 (987)
T ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CC------CHHHH
Confidence 3677888888877653 2222222222221 3478999999999998753 47888999988864 33 78999
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC--CHHHHHh
Q 018965 157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE--FFQSVSK 210 (348)
Q Consensus 157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G--~~~A~~~ 210 (348)
..+|++|.+. +++.+.++||.++.. ..+.++|+..|++|.+.. ++.+..+
T Consensus 629 ~~~l~~AL~l~Pd~~~a~~nLG~aL~~----~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 629 VSDLRAALELEPNNSNYQAALGYALWD----SGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999876 689999999988876 358899999999998764 5555554
No 62
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.71 E-value=0.13 Score=48.29 Aligned_cols=109 Identities=15% Similarity=0.120 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHC----CCH----HHHHHhhhhhhhccCCHHHHHHHHHHHHh----CCCH----HHHHHHHHHHHccCC
Q 018965 82 DSAHRFLKRCVFA----GNL----EACYTLGMIRFYCLQNRSSGTSLMAKAAM----KSHA----PALYSLAVIQFNGSG 145 (348)
Q Consensus 82 ~~A~~~~~kaA~~----G~~----~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~----~G~~----~A~~~Lg~~y~~G~g 145 (348)
++|...|.+|++. |++ .+....+.+|. ..|+.+|+.+|++|.+ .|.+ ..+..+|.+|....|
T Consensus 52 ~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k--~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~ 129 (282)
T PF14938_consen 52 EKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK--KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG 129 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT-
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC
Confidence 4556666666542 332 23344444444 3499999999999985 5664 477899999965323
Q ss_pred CCCCccCHHHHHHHHHHHHhC----CCH----HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965 146 GGKNEKDLRAGVALCARAASI----GHV----DAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 146 ~~~~~~d~~~A~~~~~kAA~~----G~~----~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
|+++|+++|++|++. |.. .....++.++.. ..++.+|+..|++.+..
T Consensus 130 ------d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~----l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 130 ------DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR----LGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp -------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHT
T ss_pred ------CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Confidence 899999999999984 432 244566666654 23999999999998864
No 63
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.68 E-value=0.093 Score=49.19 Aligned_cols=98 Identities=15% Similarity=0.108 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHccCCCCCCccC
Q 018965 81 SDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK----SH----APALYSLAVIQFNGSGGGKNEKD 152 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G~----~~A~~~Lg~~y~~G~g~~~~~~d 152 (348)
.+.|...|.+|+. .|. ..++..+|.+.|.+|++. |+ ..+....+.+|.. .|
T Consensus 31 ~e~Aa~~y~~Aa~------------~fk-~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~--------~~ 89 (282)
T PF14938_consen 31 YEEAADLYEKAAN------------CFK-LAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK--------GD 89 (282)
T ss_dssp HHHHHHHHHHHHH------------HHH-HTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--------TT
T ss_pred HHHHHHHHHHHHH------------HHH-HHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------hC
Confidence 6889999999863 333 456777888888888743 33 2344556667743 37
Q ss_pred HHHHHHHHHHHHh----CCCH----HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965 153 LRAGVALCARAAS----IGHV----DAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 153 ~~~A~~~~~kAA~----~G~~----~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
+.+|+.+|++|.+ .|.+ ..+.++|.+|+.-. .|+++|+.+|++|++.
T Consensus 90 ~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~---~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 90 PDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQL---GDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHH
Confidence 8899999999987 5764 46788999998732 5999999999999874
No 64
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.68 E-value=0.27 Score=43.64 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=67.9
Q ss_pred cHHHHHHHHHHHHHC--CCHHHHHHhhhhh-h-hccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCH
Q 018965 80 WSDSAHRFLKRCVFA--GNLEACYTLGMIR-F-YCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDL 153 (348)
Q Consensus 80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y-~-~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~ 153 (348)
..++|+..|++|... .|++..+.+|.++ . ....+..+|...|+++.+.. ++.+.+.||..+.. .| |+
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~-~g------~~ 160 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFM-QA------DY 160 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHH-cC------CH
Confidence 378999999999885 5899999999864 4 22334699999999999875 78999999999974 34 89
Q ss_pred HHHHHHHHHHHhCCCH
Q 018965 154 RAGVALCARAASIGHV 169 (348)
Q Consensus 154 ~~A~~~~~kAA~~G~~ 169 (348)
++|+.+|+++.+...+
T Consensus 161 ~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 161 AQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHHHhhCCC
Confidence 9999999999886544
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.65 E-value=0.18 Score=45.74 Aligned_cols=114 Identities=14% Similarity=0.100 Sum_probs=87.3
Q ss_pred cCcHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCH
Q 018965 78 KNWSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDL 153 (348)
Q Consensus 78 ~~~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~ 153 (348)
......|..-+++|.+. .+..|+..++.+|. ..++.+.|.+.|++|... ++.+-..|+|.++- +.| -+
T Consensus 48 ~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq-~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg------~~ 119 (250)
T COG3063 48 QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQ-KLGENDLADESYRKALSLAPNNGDVLNNYGAFLC-AQG------RP 119 (250)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCC------Ch
Confidence 33478888889998775 57788888888887 567788899999999865 46777888887663 233 47
Q ss_pred HHHHHHHHHHHhCC----CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965 154 RAGVALCARAASIG----HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE 203 (348)
Q Consensus 154 ~~A~~~~~kAA~~G----~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G 203 (348)
++|..||++|.+.- .++..-|+|.|-.. ..+...|..+|++|.+..
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~----~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALK----AGQFDQAEEYLKRALELD 169 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh----cCCchhHHHHHHHHHHhC
Confidence 89999999999863 35677788887664 447788999999997654
No 66
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.64 E-value=0.033 Score=41.13 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=40.3
Q ss_pred HHHHHhhhhhhhccCCHHHHHHHHHHHHhC----C-----CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh
Q 018965 98 EACYTLGMIRFYCLQNRSSGTSLMAKAAMK----S-----HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS 165 (348)
Q Consensus 98 ~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G-----~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~ 165 (348)
.++++||.+|. ..++.++|+.+|++|.+. | .+.+.++||.+|.. .| |+++|+++|++|.+
T Consensus 6 ~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g------~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LG------DYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHh
Confidence 46778888887 677888888888888733 2 13466677777743 23 67777777777653
No 67
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.61 E-value=0.1 Score=44.61 Aligned_cols=79 Identities=11% Similarity=0.065 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.+.|..+|+-.... -+++..|+||.++- ..+++.+|+..|.+|... .+|.+.+++|.+|+.. | |...|
T Consensus 51 l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q-~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l-G------~~~~A 122 (157)
T PRK15363 51 FAGAARLFQLLTIYDAWSFDYWFRLGECCQ-AQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC-D------NVCYA 122 (157)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc-C------CHHHH
Confidence 78888888887665 57888999999987 788999999999999976 4899999999999853 3 67888
Q ss_pred HHHHHHHHhCC
Q 018965 157 VALCARAASIG 167 (348)
Q Consensus 157 ~~~~~kAA~~G 167 (348)
.+-|+.|.+..
T Consensus 123 ~~aF~~Ai~~~ 133 (157)
T PRK15363 123 IKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHh
Confidence 88888887653
No 68
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.56 E-value=0.39 Score=43.14 Aligned_cols=117 Identities=9% Similarity=0.003 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHC--CCH---HHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CH---HHHHHHHHHHHccCCC-CCC
Q 018965 81 SDSAHRFLKRCVFA--GNL---EACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HA---PALYSLAVIQFNGSGG-GKN 149 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~---~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~---~A~~~Lg~~y~~G~g~-~~~ 149 (348)
.++|...|+++... .++ ++.+.+|.+|+ ..+++++|+..|+++.+.. ++ .+.|.+|.+|..-.+. ...
T Consensus 49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~ 127 (235)
T TIGR03302 49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRD 127 (235)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCC
Confidence 67899999988775 333 68899999998 6789999999999998753 23 3799999999753210 002
Q ss_pred ccCHHHHHHHHHHHHhC--CCHH---HH--------------HHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965 150 EKDLRAGVALCARAASI--GHVD---AV--------------RELGHCLQDGYGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 150 ~~d~~~A~~~~~kAA~~--G~~~---A~--------------~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
..+..+|.+.|.++.+. .+.. +. +.+|.+|.. ..+..+|+.+|+++.+.
T Consensus 128 ~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 128 QTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK----RGAYVAAINRFETVVEN 195 (235)
T ss_pred HHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHH
Confidence 35688999999999864 2322 22 345555543 45888999999998876
No 69
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.54 E-value=0.13 Score=44.11 Aligned_cols=60 Identities=17% Similarity=0.108 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHCC-----CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Q 018965 81 SDSAHRFLKRCVFAG-----NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQF 141 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G-----~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~ 141 (348)
.++|+.+|+++.... .+.+.++||.+|. ..++.++|+..|++|... .+..+.+++|.+|.
T Consensus 51 ~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 789999999997652 2358999999998 678899999999999864 46778889998886
No 70
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.49 E-value=0.049 Score=40.14 Aligned_cols=61 Identities=20% Similarity=0.282 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh----CCC-----HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 018965 130 APALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS----IGH-----VDAVRELGHCLQDGYGVRQNIEKGRRLLIEAN 200 (348)
Q Consensus 130 ~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~----~G~-----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa 200 (348)
+.++++||.+|. ..| ++++|+.+|++|.+ .|+ +.+.++||.+|.. ..|+++|+.+|++|.
T Consensus 5 a~~~~~la~~~~-~~~------~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYR-ELG------RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR----LGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHH-HTT-------HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcC------CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 357789999997 344 89999999999975 342 4577889998876 568999999999996
Q ss_pred h
Q 018965 201 A 201 (348)
Q Consensus 201 ~ 201 (348)
+
T Consensus 74 ~ 74 (78)
T PF13424_consen 74 D 74 (78)
T ss_dssp H
T ss_pred h
Confidence 4
No 71
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.44 E-value=0.062 Score=40.39 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHCCC----HHHHHHhhhhhhhccCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965 81 SDSAHRFLKRCVFAGN----LEACYTLGMIRFYCLQNRSSGTSLMAKA-AMKSHAPALYSLAVIQFNGSGGGKNEKDLRA 155 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G~----~~A~~~Lg~~y~~~~~d~~~A~~~~~~A-A~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~ 155 (348)
.++|+.+|++..+... ....+.||.+|+ ..++..+|+.++++. ....++...+.+|.+|.. -.++++
T Consensus 5 y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~-~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~-------l~~y~e 76 (84)
T PF12895_consen 5 YENAIKYYEKLLELDPTNPNSAYLYNLAQCYF-QQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLK-------LGKYEE 76 (84)
T ss_dssp HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH-HTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHH-------TT-HHH
T ss_pred HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-HCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------hCCHHH
Confidence 5667777777666543 344555577776 566777777777662 122345677777777653 225677
Q ss_pred HHHHHHHH
Q 018965 156 GVALCARA 163 (348)
Q Consensus 156 A~~~~~kA 163 (348)
|+..|++|
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 77777664
No 72
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.43 E-value=0.19 Score=41.97 Aligned_cols=91 Identities=15% Similarity=0.134 Sum_probs=69.1
Q ss_pred HHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-C----HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCC-CHH
Q 018965 97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-H----APALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIG-HVD 170 (348)
Q Consensus 97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-~----~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G-~~~ 170 (348)
..|.+.+|.+++ ..+++++|...|+.+.+.. + +.|.+.|+.++.. ..++++|+..+....... .+.
T Consensus 48 ~~A~l~lA~~~~-~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-------~~~~d~Al~~L~~~~~~~~~~~ 119 (145)
T PF09976_consen 48 ALAALQLAKAAY-EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-------QGQYDEALATLQQIPDEAFKAL 119 (145)
T ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-------cCCHHHHHHHHHhccCcchHHH
Confidence 356777777777 6789999999999999886 2 3478888888863 337899999997754433 355
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 018965 171 AVRELGHCLQDGYGVRQNIEKGRRLLIEA 199 (348)
Q Consensus 171 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~A 199 (348)
+...+|.+|.. ..|.++|+.-|++|
T Consensus 120 ~~~~~Gdi~~~----~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 120 AAELLGDIYLA----QGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHh
Confidence 67778888875 55899999999887
No 73
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.42 E-value=0.081 Score=39.77 Aligned_cols=77 Identities=19% Similarity=0.210 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHhCCC----HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHH-HhCCCHHHHHHHHHHHhccCCCC
Q 018965 112 QNRSSGTSLMAKAAMKSH----APALYSLAVIQFNGSGGGKNEKDLRAGVALCARA-ASIGHVDAVRELGHCLQDGYGVR 186 (348)
Q Consensus 112 ~d~~~A~~~~~~AA~~G~----~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kA-A~~G~~~A~~~Lg~~y~~G~Gv~ 186 (348)
.+++.|+.+|++..+... ....+.||.+|+. ..++.+|+.++++. .+..++...+.+|.+|.. -
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-------~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~----l 71 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-------QGKYEEAIELLQKLKLDPSNPDIHYLLARCLLK----L 71 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-------TTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHH----T
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-------CCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----h
Confidence 578899999999987764 3466677999975 23789999999883 123567899999998875 5
Q ss_pred CCHHHHHHHHHHH
Q 018965 187 QNIEKGRRLLIEA 199 (348)
Q Consensus 187 ~d~~~A~~w~~~A 199 (348)
.++++|+..|++|
T Consensus 72 ~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 72 GKYEEAIKALEKA 84 (84)
T ss_dssp T-HHHHHHHHHHH
T ss_pred CCHHHHHHHHhcC
Confidence 6899999999876
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.36 E-value=0.9 Score=41.25 Aligned_cols=116 Identities=15% Similarity=0.122 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHccCCCCCCccCHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS----HAPALYSLAVIQFNGSGGGKNEKDLR 154 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G----~~~A~~~Lg~~y~~G~g~~~~~~d~~ 154 (348)
.+.|.+.|++|... +|.+-..+.|-++- ..+.+++|..||++|.+.= .+...-|+|.|-+.- | +..
T Consensus 85 ~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~-g------q~~ 156 (250)
T COG3063 85 NDLADESYRKALSLAPNNGDVLNNYGAFLC-AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKA-G------QFD 156 (250)
T ss_pred hhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc-C------Cch
Confidence 78999999999875 67788899998876 4458999999999999874 356777999998642 2 467
Q ss_pred HHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 018965 155 AGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSV 208 (348)
Q Consensus 155 ~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~ 208 (348)
+|.++|+++-+. .++.+...++.+... +.|+..|..++++-...|...|-
T Consensus 157 ~A~~~l~raL~~dp~~~~~~l~~a~~~~~----~~~y~~Ar~~~~~~~~~~~~~A~ 208 (250)
T COG3063 157 QAEEYLKRALELDPQFPPALLELARLHYK----AGDYAPARLYLERYQQRGGAQAE 208 (250)
T ss_pred hHHHHHHHHHHhCcCCChHHHHHHHHHHh----cccchHHHHHHHHHHhcccccHH
Confidence 889999998775 467777777765443 45777788887777777774443
No 75
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.33 E-value=0.89 Score=48.79 Aligned_cols=110 Identities=10% Similarity=0.016 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHH--CCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVF--AGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~--~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.++|+..|.++.. ..++.+...+|.++. ..++..+|+..|+++.+. +++.+.+.|+.++.. . .++.+|
T Consensus 31 ~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~-~------g~~~eA 102 (765)
T PRK10049 31 DAEVITVYNRYRVHMQLPARGYAAVAVAYR-NLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD-A------GQYDEA 102 (765)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-C------CCHHHH
Confidence 5677778888774 234445788888877 567788888888887655 567888888887753 2 267888
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965 157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE 203 (348)
Q Consensus 157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G 203 (348)
+..++++.+. .++. .+.||.+|.. ..+.++|+..|+++.+..
T Consensus 103 ~~~l~~~l~~~P~~~~-~~~la~~l~~----~g~~~~Al~~l~~al~~~ 146 (765)
T PRK10049 103 LVKAKQLVSGAPDKAN-LLALAYVYKR----AGRHWDELRAMTQALPRA 146 (765)
T ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHH----CCCHHHHHHHHHHHHHhC
Confidence 8888888764 4666 7788887764 457788888888776643
No 76
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=95.27 E-value=0.62 Score=44.34 Aligned_cols=116 Identities=15% Similarity=0.035 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHCCC--HHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcc---CCCCCCccCHHH
Q 018965 81 SDSAHRFLKRCVFAGN--LEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNG---SGGGKNEKDLRA 155 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G~--~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G---~g~~~~~~d~~~ 155 (348)
.+.|-..|....+.|. ..|.-.|-.+|. ..++.+||++--++-...|.-.=...++.+|-.= .- ...|.++
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ-~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~---~~~~~d~ 198 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQ-ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL---ASSDVDR 198 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh---hhhhHHH
Confidence 5556666666555443 345555555554 4555555555555444444333333333333110 01 2334555
Q ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965 156 GVALCARAAS--IGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF 204 (348)
Q Consensus 156 A~~~~~kAA~--~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~ 204 (348)
|+.|+.||.. ..++.|-..||.++.. ..|+++|++-|+...+|..
T Consensus 199 A~~~l~kAlqa~~~cvRAsi~lG~v~~~----~g~y~~AV~~~e~v~eQn~ 245 (389)
T COG2956 199 ARELLKKALQADKKCVRASIILGRVELA----KGDYQKAVEALERVLEQNP 245 (389)
T ss_pred HHHHHHHHHhhCccceehhhhhhHHHHh----ccchHHHHHHHHHHHHhCh
Confidence 5555555543 2345555555555442 2355555555555544443
No 77
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.22 E-value=0.088 Score=37.28 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=47.1
Q ss_pred HHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965 134 YSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 134 ~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
|.+|..|.. ..|+++|...|+++.+. +++++.+.||.++.. ..++++|+.+|+++.+.
T Consensus 1 ~~~a~~~~~-------~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQ-------QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ----QGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHH-------CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHH-------cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 456666653 23899999999999987 489999999999985 56999999999999754
No 78
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.17 E-value=0.11 Score=52.41 Aligned_cols=107 Identities=14% Similarity=0.101 Sum_probs=87.6
Q ss_pred HHHHHHHHHHH-CC---CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 83 SAHRFLKRCVF-AG---NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 83 ~A~~~~~kaA~-~G---~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
...++|..++. .+ +|+-|.-||.+|. ..+++++|+..|+.|-.-. +..-...||-.+.+|.- ..+|
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~-ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~-------s~EA 483 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYN-LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNR-------SEEA 483 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHh-cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcc-------cHHH
Confidence 33445555554 44 6899999999987 8899999999999998654 66778899999988865 4889
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965 157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA 201 (348)
Q Consensus 157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~ 201 (348)
+.-|++|-+. |++.+-|+||+.|-+ -..+++|.++|..|..
T Consensus 484 IsAY~rALqLqP~yVR~RyNlgIS~mN----lG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 484 ISAYNRALQLQPGYVRVRYNLGISCMN----LGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCCeeeeehhhhhhhhh----hhhHHHHHHHHHHHHH
Confidence 9999999986 899999999998876 4478899999988864
No 79
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.12 E-value=1.1 Score=48.21 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHH--CCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHccCCCCCCccCH
Q 018965 81 SDSAHRFLKRCVF--AGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-----HAPALYSLAVIQFNGSGGGKNEKDL 153 (348)
Q Consensus 81 ~~~A~~~~~kaA~--~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-----~~~A~~~Lg~~y~~G~g~~~~~~d~ 153 (348)
..+++..+.+|-. ..||.+...|+..|+ ..+|+..+..+..-|...- -+++.|++|.+|. -.| |+
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fy-fK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H-a~G------d~ 323 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPVALNHLANHFY-FKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH-AQG------DF 323 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHh-hcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-hhc------cH
Confidence 4556666666544 246666666666665 5667777777666665543 2345677777763 234 77
Q ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965 154 RAGVALCARAASI---GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 154 ~~A~~~~~kAA~~---G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
++|+.||..|... ++.-+.+-||.+|.. .-|++.|...|++-..+
T Consensus 324 ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~----~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 324 EKAFKYYMESLKADNDNFVLPLVGLGQMYIK----RGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred HHHHHHHHHHHccCCCCccccccchhHHHHH----hchHHHHHHHHHHHHHh
Confidence 7777777766543 235666777776654 44677777777776554
No 80
>PRK11906 transcriptional regulator; Provisional
Probab=95.06 E-value=0.78 Score=45.72 Aligned_cols=131 Identities=11% Similarity=-0.045 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHH---H--CCCHHHHHHhhhhhh--------hccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCC
Q 018965 81 SDSAHRFLKRCV---F--AGNLEACYTLGMIRF--------YCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSG 145 (348)
Q Consensus 81 ~~~A~~~~~kaA---~--~G~~~A~~~Lg~~y~--------~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g 145 (348)
.+.|+.+|.+|. + -+.+.|+-.|+..++ ..+.+..+|...-++|.+.+ ++.|.+.+|..+..
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~--- 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL--- 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh---
Confidence 678999999999 3 346888888888876 23557889999999999876 78888899987643
Q ss_pred CCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHhhhhhhhhhhhhh
Q 018965 146 GGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSKTRTRHQSYYFQL 222 (348)
Q Consensus 146 ~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~~~~~~~~~~~~~ 222 (348)
..+...|..||++|-.. ..+.+.|.+|.+... .-+.++|..+.++|....--..-....+-|...+...
T Consensus 351 ----~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~----~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~ 421 (458)
T PRK11906 351 ----SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH----NEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN 421 (458)
T ss_pred ----hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC
Confidence 22478999999999987 467888888875432 3378999999999998877666655556676444333
No 81
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.01 E-value=0.27 Score=44.15 Aligned_cols=100 Identities=13% Similarity=0.038 Sum_probs=76.3
Q ss_pred CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CH---HHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCC--
Q 018965 95 GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HA---PALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIG-- 167 (348)
Q Consensus 95 G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~---~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G-- 167 (348)
..++..|.+|..++ ..++++.|+..|+++.... ++ .+.+.+|.+|.. ..++.+|+..|+++.+..
T Consensus 31 ~~~~~~~~~g~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~-------~~~~~~A~~~~~~~l~~~p~ 102 (235)
T TIGR03302 31 WPAEELYEEAKEAL-DSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK-------SGDYAEAIAAADRFIRLHPN 102 (235)
T ss_pred CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHHCcC
Confidence 45667788888887 5788999999999987753 33 688999999974 347899999999998752
Q ss_pred CH---HHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHhc
Q 018965 168 HV---DAVRELGHCLQDGYG----VRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 168 ~~---~A~~~Lg~~y~~G~G----v~~d~~~A~~w~~~Aa~~ 202 (348)
++ .+.+.+|.+|..-.+ ...+.++|+..|+++...
T Consensus 103 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 103 HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 33 479999999875321 225688899999998764
No 82
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=94.95 E-value=0.049 Score=34.74 Aligned_cols=38 Identities=32% Similarity=0.497 Sum_probs=32.2
Q ss_pred CChHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHhccCCchhh
Q 018965 23 LPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVL 65 (348)
Q Consensus 23 l~~d~l~~il~~~a~~~~s~~d~~~~~l~~k~~~~~~~~~~~l 65 (348)
||+|++..|+..+ ++.|+.++..+|+.|+.....+..+
T Consensus 1 lP~~ll~~I~~~l-----~~~d~~~~~~vc~~~~~~~~~~~~~ 38 (41)
T smart00256 1 LPDEILEEILSKL-----PPKDLLRLRKVSRRWRSLIDSHDFW 38 (41)
T ss_pred CCHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhcChhhh
Confidence 7999999999877 4579999999999999988765543
No 83
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=94.91 E-value=0.28 Score=38.45 Aligned_cols=80 Identities=14% Similarity=0.018 Sum_probs=64.9
Q ss_pred cHHHHHHHHHHHHHCC--C---HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--C---CHHHHHHHHHHHHccCCCCCC
Q 018965 80 WSDSAHRFLKRCVFAG--N---LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--S---HAPALYSLAVIQFNGSGGGKN 149 (348)
Q Consensus 80 ~~~~A~~~~~kaA~~G--~---~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G---~~~A~~~Lg~~y~~G~g~~~~ 149 (348)
..++|...|.++.... + +.+.+.+|.+++ ..+++..|+.+|+++... + .+.+.+.+|.+|.. .
T Consensus 17 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~----- 89 (119)
T TIGR02795 17 DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY-AQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE-L----- 89 (119)
T ss_pred CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH-h-----
Confidence 3788999999988743 2 579999999998 677899999999999864 2 36789999999964 3
Q ss_pred ccCHHHHHHHHHHHHhCC
Q 018965 150 EKDLRAGVALCARAASIG 167 (348)
Q Consensus 150 ~~d~~~A~~~~~kAA~~G 167 (348)
.+..+|..+|.++.+..
T Consensus 90 -~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 90 -GDKEKAKATLQQVIKRY 106 (119)
T ss_pred -CChHHHHHHHHHHHHHC
Confidence 37899999999987763
No 84
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.69 E-value=0.42 Score=45.55 Aligned_cols=108 Identities=20% Similarity=0.228 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHccCCCCCCccCH
Q 018965 81 SDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-----HAPALYSLAVIQFNGSGGGKNEKDL 153 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-----~~~A~~~Lg~~y~~G~g~~~~~~d~ 153 (348)
+|.|+.||++--..| +|+-..++|++.+ ..+..+.++--|++|-..- -++-.|+||.+. -+.| |.
T Consensus 340 PE~AlryYRRiLqmG~~speLf~NigLCC~-yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~va-V~iG------D~ 411 (478)
T KOG1129|consen 340 PEMALRYYRRILQMGAQSPELFCNIGLCCL-YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVA-VTIG------DF 411 (478)
T ss_pred hHHHHHHHHHHHHhcCCChHHHhhHHHHHH-hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeE-Eecc------ch
Confidence 566666666666665 5666666666655 2344444555555554322 234566666554 3344 66
Q ss_pred HHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 018965 154 RAGVALCARAAS--IGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEAN 200 (348)
Q Consensus 154 ~~A~~~~~kAA~--~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa 200 (348)
.-|.+.|+.|-. ..|.+|..+||.+-.. +-|+..|+.+|..|-
T Consensus 412 nlA~rcfrlaL~~d~~h~ealnNLavL~~r----~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 412 NLAKRCFRLALTSDAQHGEALNNLAVLAAR----SGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHHHhccCcchHHHHHhHHHHHhh----cCchHHHHHHHHHhh
Confidence 777777777654 3567777777776543 336677777776554
No 85
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.52 E-value=1.1 Score=46.00 Aligned_cols=113 Identities=10% Similarity=-0.036 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhh---h-cc---CCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHccCCCC
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRF---Y-CL---QNRSSGTSLMAKAAM----KSHAPALYSLAVIQFNGSGGG 147 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~---~-~~---~d~~~A~~~~~~AA~----~G~~~A~~~Lg~~y~~G~g~~ 147 (348)
..+|..+|++|.+. +++.|+-.|+..|. + .+ .+...+....+++.. ..++.++..+|.++.. .|
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~-~g-- 434 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV-KG-- 434 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh-cC--
Confidence 67899999999885 78888888888765 1 11 123455555555433 3456778888888753 33
Q ss_pred CCccCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965 148 KNEKDLRAGVALCARAASIG-HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF 204 (348)
Q Consensus 148 ~~~~d~~~A~~~~~kAA~~G-~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~ 204 (348)
++++|...|++|.+.. +..+...+|.+|.. .-+.++|..+|++|....-
T Consensus 435 ----~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~----~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 435 ----KTDEAYQAINKAIDLEMSWLNYVLLGKVYEL----KGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred ----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Confidence 8999999999999865 57788888988875 4488999999999986544
No 86
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.47 E-value=0.4 Score=44.52 Aligned_cols=119 Identities=17% Similarity=0.051 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHC----CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHH
Q 018965 81 SDSAHRFLKRCVFA----GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLR 154 (348)
Q Consensus 81 ~~~A~~~~~kaA~~----G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~ 154 (348)
.+++...+.++... .++...+.+|.++. -.++.++|+..|++|.+.. ++.+...|+.++.. .| ......
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~---~~~~~~ 200 (280)
T PF13429_consen 126 YDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKALELDPDDPDARNALAWLLID-MG---DYDEAR 200 (280)
T ss_dssp HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TC---HHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CC---ChHHHH
Confidence 56777777775543 46677778888887 5668899999999998764 57777788777742 23 122233
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh--cCCHHHHH
Q 018965 155 AGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA--REFFQSVS 209 (348)
Q Consensus 155 ~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~--~G~~~A~~ 209 (348)
+++.-+.+.. ..++.-...||.+|.. -.+.++|+.||+++.. .+|+..+.
T Consensus 201 ~~l~~~~~~~-~~~~~~~~~la~~~~~----lg~~~~Al~~~~~~~~~~p~d~~~~~ 252 (280)
T PF13429_consen 201 EALKRLLKAA-PDDPDLWDALAAAYLQ----LGRYEEALEYLEKALKLNPDDPLWLL 252 (280)
T ss_dssp HHHHHHHHH--HTSCCHCHHHHHHHHH----HT-HHHHHHHHHHHHHHSTT-HHHHH
T ss_pred HHHHHHHHHC-cCHHHHHHHHHHHhcc----cccccccccccccccccccccccccc
Confidence 4555555554 3455566677777764 3488999999999987 34555554
No 87
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.46 E-value=0.31 Score=34.97 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.++|+.+++++.+.. ++.+.+.+|.++. ...+.++|+.+|+++.... +..+.+.+|.++.. ..+..+|
T Consensus 16 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~a 87 (100)
T cd00189 16 YDEALEYYEKALELDPDNADAYYNLAAAYY-KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-------LGKYEEA 87 (100)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-------HHhHHHH
Confidence 678999999987754 4578889999987 5678899999999988754 45688899988864 2367889
Q ss_pred HHHHHHHHhC
Q 018965 157 VALCARAASI 166 (348)
Q Consensus 157 ~~~~~kAA~~ 166 (348)
..++.++.+.
T Consensus 88 ~~~~~~~~~~ 97 (100)
T cd00189 88 LEAYEKALEL 97 (100)
T ss_pred HHHHHHHHcc
Confidence 9999887653
No 88
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.54 Score=44.09 Aligned_cols=108 Identities=15% Similarity=0.076 Sum_probs=87.3
Q ss_pred HHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--
Q 018965 91 CVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI-- 166 (348)
Q Consensus 91 aA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~-- 166 (348)
..+-+|++....||.+|+ ...+...|..=|.+|... .+++..-.+|..+....| .++..++...|++|...
T Consensus 150 ~~nP~d~egW~~Lg~~ym-~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~----~~~ta~a~~ll~~al~~D~ 224 (287)
T COG4235 150 QQNPGDAEGWDLLGRAYM-ALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG----QQMTAKARALLRQALALDP 224 (287)
T ss_pred HhCCCCchhHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC----CcccHHHHHHHHHHHhcCC
Confidence 345589999999999999 678889999999999876 367777788877665555 46889999999999876
Q ss_pred CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHH
Q 018965 167 GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQS 207 (348)
Q Consensus 167 G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A 207 (348)
.|+.|++.||..++. +.|+.+|...++.=.+...+.+
T Consensus 225 ~~iral~lLA~~afe----~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 225 ANIRALSLLAFAAFE----QGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred ccHHHHHHHHHHHHH----cccHHHHHHHHHHHHhcCCCCC
Confidence 689999999998875 6799999988887766555433
No 89
>PRK11906 transcriptional regulator; Provisional
Probab=94.28 E-value=0.55 Score=46.77 Aligned_cols=112 Identities=9% Similarity=-0.013 Sum_probs=86.3
Q ss_pred HHHhhhhhh--hccCCHHHHHHHHHHHH---h--CCCHHHHHHHHHHHHcc--CCCCCCccCHHHHHHHHHHHHhC--CC
Q 018965 100 CYTLGMIRF--YCLQNRSSGTSLMAKAA---M--KSHAPALYSLAVIQFNG--SGGGKNEKDLRAGVALCARAASI--GH 168 (348)
Q Consensus 100 ~~~Lg~~y~--~~~~d~~~A~~~~~~AA---~--~G~~~A~~~Lg~~y~~G--~g~~~~~~d~~~A~~~~~kAA~~--G~ 168 (348)
.|..|...+ +.+.+...|+.+|.+|. + -+++.|+-.|+.+|..+ .|....+.+..+|.+.-++|.+. .|
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 366776655 77888999999999999 3 34688999999988665 22222578899999999999986 57
Q ss_pred HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHHhhhhhh
Q 018965 169 VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVSKTRTRH 215 (348)
Q Consensus 169 ~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~~~~~~ 215 (348)
+.|.+.+|.++.. ..+...|..||++|.....-.|+.-....|
T Consensus 338 a~a~~~~g~~~~~----~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~ 380 (458)
T PRK11906 338 GKILAIMGLITGL----SGQAKVSHILFEQAKIHSTDIASLYYYRAL 380 (458)
T ss_pred HHHHHHHHHHHHh----hcchhhHHHHHHHHhhcCCccHHHHHHHHH
Confidence 8888999986543 335889999999999998888876433333
No 90
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.23 E-value=0.078 Score=54.26 Aligned_cols=101 Identities=14% Similarity=0.093 Sum_probs=80.8
Q ss_pred CCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCH
Q 018965 94 AGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHV 169 (348)
Q Consensus 94 ~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~ 169 (348)
...|++.-.+|.+|. ..+|.+.|++.|++|.... ...|...+|.=+. ...++++|+.+|++|... -|.
T Consensus 418 ~~sPesWca~GNcfS-LQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~-------~~ee~d~a~~~fr~Al~~~~rhY 489 (638)
T KOG1126|consen 418 PNSPESWCALGNCFS-LQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-------ATEEFDKAMKSFRKALGVDPRHY 489 (638)
T ss_pred CCCcHHHHHhcchhh-hhhHHHHHHHHHHHhhccCCccchhhhhcCChhh-------hhHHHHhHHHHHHhhhcCCchhh
Confidence 367889999999987 7899999999999998664 4556655553332 346789999999999865 589
Q ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHH
Q 018965 170 DAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQ 206 (348)
Q Consensus 170 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~ 206 (348)
.|.|-||..|.. ..-.+.|...|++|.+-.-..
T Consensus 490 nAwYGlG~vy~K----qek~e~Ae~~fqkA~~INP~n 522 (638)
T KOG1126|consen 490 NAWYGLGTVYLK----QEKLEFAEFHFQKAVEINPSN 522 (638)
T ss_pred HHHHhhhhheec----cchhhHHHHHHHhhhcCCccc
Confidence 999999999986 456889999999998765543
No 91
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.15 E-value=0.15 Score=50.53 Aligned_cols=100 Identities=12% Similarity=-0.009 Sum_probs=71.6
Q ss_pred HHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHH---HHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC
Q 018965 92 VFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAP---ALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI 166 (348)
Q Consensus 92 A~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~---A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~ 166 (348)
++-.+++++++||..|+ ..+++++|+.+|++|.+.. +++ |+|++|.+|.. .| +.++|+..|++|.+.
T Consensus 70 ~dP~~a~a~~NLG~AL~-~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LG------r~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLF-SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-RE------EGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHHh
Confidence 67789999999999998 6789999999999999875 443 49999999964 34 789999999999997
Q ss_pred CCHHHHHHHHHHHhccCC--CCCCHHHHHHHHHHHHhcCC
Q 018965 167 GHVDAVRELGHCLQDGYG--VRQNIEKGRRLLIEANAREF 204 (348)
Q Consensus 167 G~~~A~~~Lg~~y~~G~G--v~~d~~~A~~w~~~Aa~~G~ 204 (348)
++.. |. .+.+... .=++.++..++++.+..-|.
T Consensus 142 sn~~--f~---~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 142 YNLK--FS---TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred cchh--HH---HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 5432 22 1122111 12344455566666666664
No 92
>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only]
Probab=94.11 E-value=0.023 Score=54.35 Aligned_cols=46 Identities=37% Similarity=0.898 Sum_probs=38.3
Q ss_pred cccccCCCCCCCCccccccccCCCCCceeecChHHHHHhchhhchhcCCCCCC
Q 018965 270 LRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPLA 322 (348)
Q Consensus 270 ~~~C~~~~C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C~~~~~ 322 (348)
...|..++|.. . ..|+.|+...|||+..|..||+.+|+..|.....
T Consensus 136 ~~~~~~~~~~a--~-----~~~~~~~~a~~~S~~~q~~d~~~~~~~a~aq~~~ 181 (362)
T KOG2061|consen 136 ADLCGSCGCSA--P-----AACSPCKAAAYCSKKHQSLDWPKGHKDACAQPST 181 (362)
T ss_pred cchhccCcccC--c-----ccccccchhhhcCchhhcccccccccccccCccc
Confidence 35677666663 3 5699999999999999999999999999987763
No 93
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.04 E-value=1.6 Score=42.63 Aligned_cols=177 Identities=15% Similarity=0.083 Sum_probs=101.2
Q ss_pred CCCCCCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHhccCCchhhcccC----chhhhhhc---cCcHHHHHHHH
Q 018965 16 KPDLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLSQAG----PKALAVKA---KNWSDSAHRFL 88 (348)
Q Consensus 16 ~~~~~~~l~~d~l~~il~~~a~~~~s~~d~~~~~l~~k~~~~~~~~~~~l~~~~----~~~~~~~~---~~~~~~A~~~~ 88 (348)
.-...+-++.|++..++-..- +..|+..+.-....+....... +.... ...|++.. ..+.++|+.++
T Consensus 132 rLd~~~~ls~div~~lllSyR----diqdydamI~Lve~l~~~p~~~--~~~~~~i~~~yafALnRrn~~gdre~Al~il 205 (374)
T PF13281_consen 132 RLDDPELLSPDIVINLLLSYR----DIQDYDAMIKLVETLEALPTCD--VANQHNIKFQYAFALNRRNKPGDREKALQIL 205 (374)
T ss_pred hhCCHhhcChhHHHHHHHHhh----hhhhHHHHHHHHHHhhccCccc--hhcchHHHHHHHHHHhhcccCCCHHHHHHHH
Confidence 333344567777777665332 4456665543333333331111 11111 24555554 45689999999
Q ss_pred HHHH---HCCCHHHHHHhhhhhh-----h---ccCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHH-ccCCCCCCccC--H
Q 018965 89 KRCV---FAGNLEACYTLGMIRF-----Y---CLQNRSSGTSLMAKAAMKS-HAPALYSLAVIQF-NGSGGGKNEKD--L 153 (348)
Q Consensus 89 ~kaA---~~G~~~A~~~Lg~~y~-----~---~~~d~~~A~~~~~~AA~~G-~~~A~~~Lg~~y~-~G~g~~~~~~d--~ 153 (348)
.+.. +.-+++..-.+|.+|- . ......+|++||.++-+.. +..+-.|++.++. .|.. .+.+ .
T Consensus 206 ~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~---~~~~~el 282 (374)
T PF13281_consen 206 LPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHD---FETSEEL 282 (374)
T ss_pred HHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCc---ccchHHH
Confidence 8833 3457888999999986 1 1224789999999999875 3334446666553 4443 2221 1
Q ss_pred -HHHHHHHHHHHhCC---CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965 154 -RAGVALCARAASIG---HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 154 -~~A~~~~~kAA~~G---~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
+-.+.+=....+.| ...-.+.+|.+.+-... ..|.++|..|++++...
T Consensus 283 ~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL-~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 283 RKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVL-AGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH-cCCHHHHHHHHHHHhhc
Confidence 11223333344455 34455566666555433 34999999999999865
No 94
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.86 E-value=0.27 Score=48.85 Aligned_cols=70 Identities=19% Similarity=0.145 Sum_probs=58.2
Q ss_pred HhCCCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHH---HHHHHHHHHhccCCCCCCHHHHHHHHHHH
Q 018965 125 AMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVD---AVRELGHCLQDGYGVRQNIEKGRRLLIEA 199 (348)
Q Consensus 125 A~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~---A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~A 199 (348)
++-.++.++++||..|.. .| ++++|+.+|++|.+. .+.+ +.|++|.+|.. ..+.++|+..|++|
T Consensus 70 ~dP~~a~a~~NLG~AL~~-lG------ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~----LGr~dEAla~LrrA 138 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFS-KG------RVKDALAQFETALELNPNPDEAQAAYYNKACCHAY----REEGKKAADCLRTA 138 (453)
T ss_pred CCCCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Confidence 567799999999999964 23 899999999999986 4554 49999999986 45999999999999
Q ss_pred HhcCCH
Q 018965 200 NAREFF 205 (348)
Q Consensus 200 a~~G~~ 205 (348)
.+.++.
T Consensus 139 Lelsn~ 144 (453)
T PLN03098 139 LRDYNL 144 (453)
T ss_pred HHhcch
Confidence 997544
No 95
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.59 E-value=0.82 Score=42.57 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHC--CC---HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHccCCCCCCc
Q 018965 81 SDSAHRFLKRCVFA--GN---LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK-----SHAPALYSLAVIQFNGSGGGKNE 150 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~---~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~-----G~~~A~~~Lg~~y~~G~g~~~~~ 150 (348)
+++|+..|++..+. .+ +.|+|.||.+|+ ..+++++|+..|++..+. -.++|++.+|.+|.. .|
T Consensus 159 y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-~g----- 231 (263)
T PRK10803 159 QDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-KG----- 231 (263)
T ss_pred HHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-cC-----
Confidence 67888888887764 23 589999999998 789999999999999953 258899999999963 33
Q ss_pred cCHHHHHHHHHHHHhC
Q 018965 151 KDLRAGVALCARAASI 166 (348)
Q Consensus 151 ~d~~~A~~~~~kAA~~ 166 (348)
|..+|...|++..+.
T Consensus 232 -~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 232 -DTAKAKAVYQQVIKK 246 (263)
T ss_pred -CHHHHHHHHHHHHHH
Confidence 889999999988775
No 96
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=93.55 E-value=1.3 Score=43.72 Aligned_cols=77 Identities=6% Similarity=0.069 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHhC--CCH--HHHHHHHHHHHccCCCCCCccCHHHHHHHHHH--HHh-CCCHHHHHHHHHHHhccCC
Q 018965 112 QNRSSGTSLMAKAAMK--SHA--PALYSLAVIQFNGSGGGKNEKDLRAGVALCAR--AAS-IGHVDAVRELGHCLQDGYG 184 (348)
Q Consensus 112 ~d~~~A~~~~~~AA~~--G~~--~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~k--AA~-~G~~~A~~~Lg~~y~~G~G 184 (348)
.|..++.+.++++.+. +++ .....||.++.. ..++.+|.++|++ +-+ .-++.....||.++..
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~-------~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~--- 382 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMK-------HGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ--- 382 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH-------cccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH---
Confidence 3444455555444443 344 334445555431 1244555555553 222 2233333345554443
Q ss_pred CCCCHHHHHHHHHHH
Q 018965 185 VRQNIEKGRRLLIEA 199 (348)
Q Consensus 185 v~~d~~~A~~w~~~A 199 (348)
..+.++|.++|+++
T Consensus 383 -~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 383 -AGDKAEAAAMRQDS 396 (409)
T ss_pred -cCCHHHHHHHHHHH
Confidence 23445555555544
No 97
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.52 E-value=0.87 Score=48.25 Aligned_cols=104 Identities=8% Similarity=-0.052 Sum_probs=85.3
Q ss_pred CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHH
Q 018965 95 GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVD 170 (348)
Q Consensus 95 G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~ 170 (348)
-+++++++||.+.. .-...++|..||+.+.+. +|..|..+++.++.. .+-+++|+.+++++... .++.
T Consensus 84 ~~~~~~~~La~i~~-~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~-------~~~~eeA~~~~~~~l~~~p~~~~ 155 (694)
T PRK15179 84 HTELFQVLVARALE-AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR-------QQGIEAGRAEIELYFSGGSSSAR 155 (694)
T ss_pred ccHHHHHHHHHHHH-HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-------hccHHHHHHHHHHHhhcCCCCHH
Confidence 46899999999987 556788999999999976 589999999999864 34579999999999876 5899
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC--CHHHHHh
Q 018965 171 AVRELGHCLQDGYGVRQNIEKGRRLLIEANARE--FFQSVSK 210 (348)
Q Consensus 171 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G--~~~A~~~ 210 (348)
+++.+|.++.. --.+++|...|+++..++ ++.++.+
T Consensus 156 ~~~~~a~~l~~----~g~~~~A~~~y~~~~~~~p~~~~~~~~ 193 (694)
T PRK15179 156 EILLEAKSWDE----IGQSEQADACFERLSRQHPEFENGYVG 193 (694)
T ss_pred HHHHHHHHHHH----hcchHHHHHHHHHHHhcCCCcHHHHHH
Confidence 99999998764 337899999999999755 3455554
No 98
>PRK14574 hmsH outer membrane protein; Provisional
Probab=93.51 E-value=0.66 Score=50.12 Aligned_cols=112 Identities=7% Similarity=-0.068 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHh--hhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFAGNLEACYTL--GMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G~~~A~~~L--g~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.++|+.+++++.+..+....-.+ |.+|. ..+++.+|+++|+++.+.. ++.+++.|+..|..- ...++|
T Consensus 84 ~~~A~~~~eka~~p~n~~~~~llalA~ly~-~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~-------~q~~eA 155 (822)
T PRK14574 84 DQEVIDVYERYQSSMNISSRGLASAARAYR-NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADA-------GRGGVV 155 (822)
T ss_pred cHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc-------CCHHHH
Confidence 78999999999976665555555 66887 6789999999999999875 677887776666432 367899
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965 157 VALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE 203 (348)
Q Consensus 157 ~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G 203 (348)
++.++++...--. ..+.++..|... | ..+..+|+.-|+++.+..
T Consensus 156 l~~l~~l~~~dp~-~~~~l~layL~~-~-~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 156 LKQATELAERDPT-VQNYMTLSYLNR-A-TDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHhcccCcc-hHHHHHHHHHHH-h-cchHHHHHHHHHHHHHhC
Confidence 9999998765322 333355555442 2 223333666666666653
No 99
>PRK15331 chaperone protein SicA; Provisional
Probab=93.44 E-value=1 Score=38.80 Aligned_cols=78 Identities=12% Similarity=0.015 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.++|..+|+-..-.+ |++=.+.||.++. ..+++++|+..|..|+.. ++|...|..|.||+. -.|..+|
T Consensus 53 ~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~-------l~~~~~A 124 (165)
T PRK15331 53 LDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL-------MRKAAKA 124 (165)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH-------hCCHHHH
Confidence 566666666655543 4443444444444 566777777777777654 467777777777753 2366777
Q ss_pred HHHHHHHHhC
Q 018965 157 VALCARAASI 166 (348)
Q Consensus 157 ~~~~~kAA~~ 166 (348)
...|..+.++
T Consensus 125 ~~~f~~a~~~ 134 (165)
T PRK15331 125 RQCFELVNER 134 (165)
T ss_pred HHHHHHHHhC
Confidence 7777777664
No 100
>PRK14574 hmsH outer membrane protein; Provisional
Probab=92.96 E-value=1.4 Score=47.55 Aligned_cols=110 Identities=15% Similarity=0.010 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSH--APALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~--~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
...|+..|+++.+.. ++.+.+.+..++. ..++.++|+.+++++....+ ..+...+|.+|.. .+++.+|
T Consensus 50 ~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~-------~gdyd~A 121 (822)
T PRK14574 50 TAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN-------EKRWDQA 121 (822)
T ss_pred HHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-------cCCHHHH
Confidence 679999999987654 3334556666655 45888999999999996544 4444455778863 3478899
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965 157 VALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
+++|+++.+. +++.+++.|+..|..- ...++|+..++++...
T Consensus 122 iely~kaL~~dP~n~~~l~gLa~~y~~~----~q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 122 LALWQSSLKKDPTNPDLISGMIMTQADA----GRGGVVLKQATELAER 165 (822)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhhc----CCHHHHHHHHHHhccc
Confidence 9999999986 5788888776776653 5677787777776543
No 101
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=92.70 E-value=0.027 Score=37.65 Aligned_cols=41 Identities=32% Similarity=0.555 Sum_probs=31.5
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHhccCCchh
Q 018965 19 LFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTV 64 (348)
Q Consensus 19 ~~~~l~~d~l~~il~~~a~~~~s~~d~~~~~l~~k~~~~~~~~~~~ 64 (348)
+|.+||+|++.+||..+ ++.|+.++..+|+.|+........
T Consensus 2 ~~~~LP~~il~~Il~~l-----~~~~~~~l~~vsk~~~~~~~~~~~ 42 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYL-----DPKDLLRLSLVSKRWRSLVDSPRL 42 (48)
T ss_dssp HHHHS-HHHHHHHHHTS------HHHHHHHCTT-HHHHHHHTTHHH
T ss_pred CHHHCCHHHHHHHHHHC-----cHHHHHHHHHHhhHHHHHHcCCCc
Confidence 35679999999999977 456999999999999988765443
No 102
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=92.56 E-value=1.3 Score=42.31 Aligned_cols=116 Identities=16% Similarity=0.142 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHhhhhhh------hccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCH
Q 018965 82 DSAHRFLKRCVFAGNLEACYTLGMIRF------YCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDL 153 (348)
Q Consensus 82 ~~A~~~~~kaA~~G~~~A~~~Lg~~y~------~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~ 153 (348)
+||++.=++-+..|.-+=.+.++.+|- -...|.++|+.|+.||.+.. ...|-..||.++. +.| |+
T Consensus 158 ~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~-~~g------~y 230 (389)
T COG2956 158 EKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVEL-AKG------DY 230 (389)
T ss_pred HHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHH-hcc------ch
Confidence 456665555666666666666666654 36788999999999999986 6789999999986 345 89
Q ss_pred HHHHHHHHHHHhCCC---HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 018965 154 RAGVALCARAASIGH---VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSV 208 (348)
Q Consensus 154 ~~A~~~~~kAA~~G~---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~ 208 (348)
++|++-++...++.. ++..-.|-.+|.. -.+.++.+.|+.++.+.-...+.
T Consensus 231 ~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~----lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 231 QKAVEALERVLEQNPEYLSEVLEMLYECYAQ----LGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHccCCccH
Confidence 999999999999865 3345556667765 34778999999999876554433
No 103
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=92.08 E-value=2.4 Score=39.01 Aligned_cols=112 Identities=20% Similarity=0.154 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHCCCHH--HHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHH
Q 018965 82 DSAHRFLKRCVFAGNLE--ACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGV 157 (348)
Q Consensus 82 ~~A~~~~~kaA~~G~~~--A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~ 157 (348)
+.++....+.+..-..+ ....+|...+ ...|+..|+.-+++|+... +.++...||.+|.. .| +...|.
T Consensus 83 ~~~l~~~~~~~~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~G------r~~~Ar 154 (257)
T COG5010 83 DSSLAVLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LG------RFDEAR 154 (257)
T ss_pred cchHHHHhhhhccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-cc------ChhHHH
Confidence 45555666655543333 2222455544 6778899999999998764 77888899999864 33 567888
Q ss_pred HHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCH
Q 018965 158 ALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFF 205 (348)
Q Consensus 158 ~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~ 205 (348)
.-|.+|.+. +++....|||+.|. +..|++.|..++..|..++..
T Consensus 155 ~ay~qAl~L~~~~p~~~nNlgms~~----L~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 155 RAYRQALELAPNEPSIANNLGMSLL----LRGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred HHHHHHHHhccCCchhhhhHHHHHH----HcCCHHHHHHHHHHHHhCCCC
Confidence 888888874 68889999998765 255999999999999888774
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=92.04 E-value=2.2 Score=46.36 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhh-----------------hccCCHHHHHHHHH-HHHhCCC-HHHHHHHHHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRF-----------------YCLQNRSSGTSLMA-KAAMKSH-APALYSLAVI 139 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~-----------------~~~~d~~~A~~~~~-~AA~~G~-~~A~~~Lg~~ 139 (348)
.+++....+.+.+. +.+.++|.+|.+|+ ....+. .++++|. +-.+-++ -.|.+.||.+
T Consensus 47 ~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~ 125 (906)
T PRK14720 47 TDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDKILLYGENKLALRTLAEA 125 (906)
T ss_pred HHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 66777777755553 46677888887765 011123 3444443 3334443 3599999999
Q ss_pred HHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965 140 QFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 140 y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
|..- | +.++|+..|+++.+. .|+.++.+||..|..- |+++|..++.+|...
T Consensus 126 Ydk~-g------~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-----dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 126 YAKL-N------ENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-----DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHc-C------ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHH
Confidence 9642 2 568999999999875 6899999999999863 999999999999876
No 105
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=91.91 E-value=9 Score=37.65 Aligned_cols=110 Identities=7% Similarity=-0.000 Sum_probs=80.8
Q ss_pred cCcHHHHHHHHHHHHHCC-CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHH
Q 018965 78 KNWSDSAHRFLKRCVFAG-NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLR 154 (348)
Q Consensus 78 ~~~~~~A~~~~~kaA~~G-~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~ 154 (348)
.+..++|...++++-+.. |++.....+.+ ...|..+++..+++-.++ +++...+.+|.++.. .++..
T Consensus 276 ~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l---~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~-------~~~~~ 345 (398)
T PRK10747 276 CDDHDTAQQIILDGLKRQYDERLVLLIPRL---KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMK-------HGEWQ 345 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCHHHHHHHhhc---cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-------CCCHH
Confidence 344889999999988754 44333333333 236788888888777665 477788899999964 34789
Q ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965 155 AGVALCARAASIGH-VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA 201 (348)
Q Consensus 155 ~A~~~~~kAA~~G~-~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~ 201 (348)
+|.++|+++.+... ......|+.++.. ..+.++|..+|+++..
T Consensus 346 ~A~~~le~al~~~P~~~~~~~La~~~~~----~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 346 EASLAFRAALKQRPDAYDYAWLADALDR----LHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 99999999998854 4455889998875 4478999999998854
No 106
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=91.67 E-value=0.17 Score=47.73 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=42.5
Q ss_pred CCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHhccCCchhhcc
Q 018965 20 FDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLSQ 67 (348)
Q Consensus 20 ~~~l~~d~l~~il~~~a~~~~s~~d~~~~~l~~k~~~~~~~~~~~l~~ 67 (348)
|..||+|+|.+||..+.++.-+..++.++.++|+.|.....++.++..
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~ 154 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL 154 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence 577999999999999998777889999999999999999988776543
No 107
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.54 E-value=0.34 Score=31.72 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHHHhC--CCHHHHHHHH
Q 018965 152 DLRAGVALCARAASI--GHVDAVRELG 176 (348)
Q Consensus 152 d~~~A~~~~~kAA~~--G~~~A~~~Lg 176 (348)
++++|.++|+++.+. +++.+.+.||
T Consensus 16 ~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 16 QPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred CHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 344444555444433 3444444444
No 108
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.29 E-value=1.7 Score=39.70 Aligned_cols=97 Identities=23% Similarity=0.225 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHh-------CCCHHHHH-HHHHHHHccCCCCCCccC
Q 018965 81 SDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAM-------KSHAPALY-SLAVIQFNGSGGGKNEKD 152 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~-------~G~~~A~~-~Lg~~y~~G~g~~~~~~d 152 (348)
+++|.++|.+|+. +|.|+ ++...|=.-|.+||+ ..+.--+| ..+.+|. ..|
T Consensus 30 ~eeAadl~~~Aan------~ykla-------K~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk--------k~~ 88 (288)
T KOG1586|consen 30 YEEAAELYERAAN------MYKLA-------KNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK--------KVD 88 (288)
T ss_pred hHHHHHHHHHHHH------HHHHH-------HhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh--------ccC
Confidence 7888899998864 34443 333444444444443 22222222 4445563 337
Q ss_pred HHHHHHHHHHHHh----CCCHH----HHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965 153 LRAGVALCARAAS----IGHVD----AVRELGHCLQDGYGVRQNIEKGRRLLIEANA 201 (348)
Q Consensus 153 ~~~A~~~~~kAA~----~G~~~----A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~ 201 (348)
+.+|+..+++|.+ .|.-. =...+|.+|++- .+|.++|+..|++|++
T Consensus 89 ~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd---l~d~ekaI~~YE~Aae 142 (288)
T KOG1586|consen 89 PEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD---LQDFEKAIAHYEQAAE 142 (288)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh---HHHHHHHHHHHHHHHH
Confidence 8899999998876 34321 134678888863 3799999999999987
No 109
>PLN03158 methionine aminopeptidase; Provisional
Probab=91.24 E-value=0.18 Score=49.80 Aligned_cols=42 Identities=26% Similarity=0.767 Sum_probs=33.6
Q ss_pred CCccccccCCCCCCCCccccccccCCCCCc-------eeecChHHHHHhchhhchhc
Q 018965 267 GNGLRLCSYSGCGRPETRVHEYRRCSVCGK-------VNYCSRACQAIDWKTRHKRE 316 (348)
Q Consensus 267 ~~~~~~C~~~~C~~~~~~~~~l~~C~~C~~-------~~YCs~~CQ~~~W~~~Hk~~ 316 (348)
....+.|. +|++..+ ..|..|.. .++||.+|=+..|+. ||..
T Consensus 6 ~~~~~~c~--~c~~~a~-----l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~-Hk~~ 54 (396)
T PLN03158 6 TTSPLACA--RCSKPAH-----LQCPKCLELKLPREGASFCSQDCFKAAWSS-HKSV 54 (396)
T ss_pred CCCccccc--CCCCccc-----ccCccchhcCCCCCCceeECHHHHHHHHHH-HHHH
Confidence 35556798 6998655 88998864 789999999999997 8764
No 110
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=91.18 E-value=2.8 Score=39.88 Aligned_cols=93 Identities=13% Similarity=-0.032 Sum_probs=66.9
Q ss_pred HHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCC----C--H
Q 018965 98 EACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIG----H--V 169 (348)
Q Consensus 98 ~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G----~--~ 169 (348)
.+...+|.++. ..++..+|...++++.+.. ++.+.+.||.+|.. .| ++++|..+|.++.+.- . .
T Consensus 115 ~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g------~~~eA~~~l~~~l~~~~~~~~~~~ 186 (355)
T cd05804 115 YLLGMLAFGLE-EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QG------RFKEGIAFMESWRDTWDCSSMLRG 186 (355)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cC------CHHHHHHHHHhhhhccCCCcchhH
Confidence 45555666666 5678889999999998765 56678888888854 34 6789999999988742 1 1
Q ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965 170 DAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 170 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
...+.++.+|.. ..+.++|+.+|+++...
T Consensus 187 ~~~~~la~~~~~----~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 187 HNWWHLALFYLE----RGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHhcc
Confidence 234567877764 45889999999988543
No 111
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.83 E-value=0.42 Score=28.83 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=15.9
Q ss_pred HHHHHhhhhhhhccCCHHHHHHHHHHHHh
Q 018965 98 EACYTLGMIRFYCLQNRSSGTSLMAKAAM 126 (348)
Q Consensus 98 ~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~ 126 (348)
++.+.+|.+|+ ..++.++|+++|++|.+
T Consensus 2 ~~~~~lg~~~~-~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYY-QLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHH
Confidence 45566666665 45566666666666543
No 112
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.67 E-value=3.2 Score=38.52 Aligned_cols=91 Identities=18% Similarity=0.155 Sum_probs=70.7
Q ss_pred HHHhhhhhhhccCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC-----CCH
Q 018965 100 CYTLGMIRFYCLQNRSSGTSLMAKAAMKS-----HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI-----GHV 169 (348)
Q Consensus 100 ~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-----~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~-----G~~ 169 (348)
.|+.+.-++ -.+|+..|..-|..=.+.. .+.|+|.||..++ ...|++.|.+.|...+.. --+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y-------~qg~y~~Aa~~f~~~~k~~P~s~KAp 215 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY-------AQGDYEDAAYIFARVVKDYPKSPKAP 215 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH-------hcccchHHHHHHHHHHHhCCCCCCCh
Confidence 566666555 4567888888887777665 5789999999986 334889999999999873 457
Q ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965 170 DAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 170 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
++++.||.+... ..+.++|...|++...+
T Consensus 216 dallKlg~~~~~----l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 216 DALLKLGVSLGR----LGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHHHHH
Confidence 999999997654 56889999999988754
No 113
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=90.28 E-value=6 Score=38.89 Aligned_cols=116 Identities=9% Similarity=0.038 Sum_probs=80.9
Q ss_pred ccCcHHHHHHHHHHHHHCC-CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-CH-HHHH-HHHHHHHccCCCCCCccC
Q 018965 77 AKNWSDSAHRFLKRCVFAG-NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-HA-PALY-SLAVIQFNGSGGGKNEKD 152 (348)
Q Consensus 77 ~~~~~~~A~~~~~kaA~~G-~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-~~-~A~~-~Lg~~y~~G~g~~~~~~d 152 (348)
.++ .++|.+.+.++++.. +|...+.++-......+|++.|..||++|++.. +. .+.. ..+.++.. .| |
T Consensus 97 eGd-~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~-~g------~ 168 (398)
T PRK10747 97 EGD-YQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLA-RN------E 168 (398)
T ss_pred CCC-HHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-CC------C
Confidence 344 568999999988875 444444444444357889999999999999853 22 2332 23556643 23 7
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965 153 LRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF 204 (348)
Q Consensus 153 ~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~ 204 (348)
+++|...+++..+. .++.+...++.+|.. ..|.++|...+.+....+.
T Consensus 169 ~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~----~gdw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 169 NHAARHGVDKLLEVAPRHPEVLRLAEQAYIR----TGAWSSLLDILPSMAKAHV 218 (398)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHcCC
Confidence 89999999998876 589999999998865 3577777777666665543
No 114
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.24 E-value=0.42 Score=45.16 Aligned_cols=51 Identities=24% Similarity=0.378 Sum_probs=41.4
Q ss_pred ccCCCCCCCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHhccCCchhhccc
Q 018965 13 LVEKPDLFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGLRPTVLSQA 68 (348)
Q Consensus 13 ~~~~~~~~~~l~~d~l~~il~~~a~~~~s~~d~~~~~l~~k~~~~~~~~~~~l~~~ 68 (348)
+.-+.-.|+.|||+++.-||+.+.- .++..+..+|++|+..+.+...+...
T Consensus 91 ~~npgv~~~slpDEill~IFs~L~k-----k~LL~~~~VC~Rfyr~~~de~lW~~l 141 (419)
T KOG2120|consen 91 ENNPGVSWDSLPDEILLGIFSCLCK-----KELLKVSGVCKRFYRLASDESLWQTL 141 (419)
T ss_pred ccCCCCCcccCCHHHHHHHHHhccH-----HHHHHHHHHHHHHhhccccccceeee
Confidence 3334445899999999999998865 59999999999999999877665443
No 115
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=89.70 E-value=3.6 Score=33.48 Aligned_cols=77 Identities=19% Similarity=0.177 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHCCCH-----HHHHHhhhhhhhccCCHHHHHHHHHHHHhC--C---CHHHHHHHHHHHHccCCCCCCc
Q 018965 81 SDSAHRFLKRCVFAGNL-----EACYTLGMIRFYCLQNRSSGTSLMAKAAMK--S---HAPALYSLAVIQFNGSGGGKNE 150 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G~~-----~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G---~~~A~~~Lg~~y~~G~g~~~~~ 150 (348)
.++|+.+|+++.+.|-. .+...||..|. .-..+++|+.+|+++... + +....+.++..+.+ .|
T Consensus 17 ~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~-~g----- 89 (120)
T PF12688_consen 17 EEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN-LG----- 89 (120)
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH-CC-----
Confidence 78999999999998744 46677777776 667899999999999876 2 44566666766543 22
Q ss_pred cCHHHHHHHHHHHHh
Q 018965 151 KDLRAGVALCARAAS 165 (348)
Q Consensus 151 ~d~~~A~~~~~kAA~ 165 (348)
..++|+.|+..+..
T Consensus 90 -r~~eAl~~~l~~la 103 (120)
T PF12688_consen 90 -RPKEALEWLLEALA 103 (120)
T ss_pred -CHHHHHHHHHHHHH
Confidence 56889999988764
No 116
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.67 E-value=1.5 Score=46.61 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=30.8
Q ss_pred hCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCH
Q 018965 165 SIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFF 205 (348)
Q Consensus 165 ~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~ 205 (348)
+.|+..|.|.||.+|++ .-|..+|+++|.+|-.--|+
T Consensus 963 esgd~AAcYhlaR~YEn----~g~v~~Av~FfTrAqafsnA 999 (1416)
T KOG3617|consen 963 ESGDKAACYHLARMYEN----DGDVVKAVKFFTRAQAFSNA 999 (1416)
T ss_pred hcccHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999997 45788999999999655444
No 117
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.61 E-value=3.6 Score=41.88 Aligned_cols=45 Identities=13% Similarity=0.128 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965 153 LRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA 201 (348)
Q Consensus 153 ~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~ 201 (348)
+.+|+.+|++|-.. -++.....+|.+|.. ..|+..|+..|-+|-.
T Consensus 471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~l----lgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSPKDASTHASIGYIYHL----LGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHH----hcChHHHHHHHHHHHh
Confidence 34555555555543 345555555555542 3455555555555543
No 118
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.50 E-value=0.9 Score=29.66 Aligned_cols=41 Identities=20% Similarity=0.101 Sum_probs=35.4
Q ss_pred HHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHH
Q 018965 97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAV 138 (348)
Q Consensus 97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~ 138 (348)
|++.+.||..|. ..+++++|+.+|+++.+.. ++.+.+.||.
T Consensus 1 p~~~~~la~~~~-~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYR-RLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467889999998 7889999999999999984 7888888875
No 119
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=88.77 E-value=5.6 Score=39.20 Aligned_cols=96 Identities=14% Similarity=0.020 Sum_probs=68.3
Q ss_pred CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCH--H
Q 018965 95 GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHV--D 170 (348)
Q Consensus 95 G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~--~ 170 (348)
.++...+.++..+. ..++.++|.+.++++.++.-......+..+...+.- .+.|..++.+.++++.+. +++ .
T Consensus 261 ~~~~l~~~~a~~l~-~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l---~~~~~~~~~~~~e~~lk~~p~~~~~~ 336 (409)
T TIGR00540 261 HNIALKIALAEHLI-DCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRL---KPEDNEKLEKLIEKQAKNVDDKPKCC 336 (409)
T ss_pred CCHHHHHHHHHHHH-HCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhc---CCCChHHHHHHHHHHHHhCCCChhHH
Confidence 47788888888777 678899999999999986433221111111111111 235778888888888765 778 7
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHH
Q 018965 171 AVRELGHCLQDGYGVRQNIEKGRRLLIE 198 (348)
Q Consensus 171 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~ 198 (348)
....||.++.. .++..+|..+|++
T Consensus 337 ll~sLg~l~~~----~~~~~~A~~~le~ 360 (409)
T TIGR00540 337 INRALGQLLMK----HGEFIEAADAFKN 360 (409)
T ss_pred HHHHHHHHHHH----cccHHHHHHHHHH
Confidence 77799998875 6789999999995
No 120
>PLN03218 maturation of RBCL 1; Provisional
Probab=88.51 E-value=13 Score=41.60 Aligned_cols=116 Identities=13% Similarity=0.082 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHCC---CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHccCCCCCCccCHH
Q 018965 81 SDSAHRFLKRCVFAG---NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS---HAPALYSLAVIQFNGSGGGKNEKDLR 154 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G---~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G---~~~A~~~Lg~~y~~G~g~~~~~~d~~ 154 (348)
.++|..+|....+.| +...+..|..+|. ..++.++|.++|++.-+.| +...+..|-..|.. ..+.+
T Consensus 665 ~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~-k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k-------~G~~e 736 (1060)
T PLN03218 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACS-NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE-------GNQLP 736 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------CCCHH
Confidence 566777777766666 3445555555554 4566777777777665544 33344444444422 22567
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCH
Q 018965 155 AGVALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFF 205 (348)
Q Consensus 155 ~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~ 205 (348)
+|+++|.+-.+.|...-...+..+. .+..-..+.++|..++.+..+.|..
T Consensus 737 eAlelf~eM~~~Gi~Pd~~Ty~sLL-~a~~k~G~le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 737 KALEVLSEMKRLGLCPNTITYSILL-VASERKDDADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 7888887776666433222222222 2333455778888888888777753
No 121
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=88.18 E-value=7 Score=41.85 Aligned_cols=112 Identities=16% Similarity=0.107 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.+.|.+.+.....+ .++.|.+.||.+|. ..+|.+++...+..||-. ++.+=+..++.+... .| ++.+|
T Consensus 155 ~eeA~~i~~EvIkqdp~~~~ay~tL~~IyE-qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~------~i~qA 226 (895)
T KOG2076|consen 155 LEEAEEILMEVIKQDPRNPIAYYTLGEIYE-QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LG------NINQA 226 (895)
T ss_pred HHHHHHHHHHHHHhCccchhhHHHHHHHHH-HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cc------cHHHH
Confidence 67777777777665 36778888888887 344778887777777743 466666667666532 22 57888
Q ss_pred HHHHHHHHhCC--CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965 157 VALCARAASIG--HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF 204 (348)
Q Consensus 157 ~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~ 204 (348)
..+|.+|.... +..-.++-+.+|.+ .-+..+|..=|.+....-.
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~----~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQK----TGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHH----hChHHHHHHHHHHHHhhCC
Confidence 88888887654 44455555666654 2267777777777777666
No 122
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.97 E-value=5.3 Score=40.23 Aligned_cols=89 Identities=13% Similarity=0.069 Sum_probs=61.1
Q ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCC--CCccCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhccCCCC
Q 018965 111 LQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGG--KNEKDLRAGVALCARAASIG--HVDAVRELGHCLQDGYGVR 186 (348)
Q Consensus 111 ~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~--~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~ 186 (348)
.++..+|++.|.+|.+.-...-...++.+-+.|.+.- .-.+|+.+|..+++||.+.. .-.|.-.||.+-.. .
T Consensus 475 qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ----~ 550 (606)
T KOG0547|consen 475 QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQ----R 550 (606)
T ss_pred HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHH----H
Confidence 3478899999999998865532222222222221100 01379999999999999875 46688888887654 4
Q ss_pred CCHHHHHHHHHHHHhcC
Q 018965 187 QNIEKGRRLLIEANARE 203 (348)
Q Consensus 187 ~d~~~A~~w~~~Aa~~G 203 (348)
-++.+|+.+|++++..-
T Consensus 551 ~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 551 GKIDEAIELFEKSAQLA 567 (606)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 48999999999998643
No 123
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.96 E-value=5.5 Score=40.10 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=76.9
Q ss_pred cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965 80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRA 155 (348)
Q Consensus 80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~ 155 (348)
..++....|.+|.+. .|++-+|.-|+|++ +-++++.|+.=|++|.... ++-++.+|+...+.- .-+..
T Consensus 375 ~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f-lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~-------~k~~~ 446 (606)
T KOG0547|consen 375 QSEKMWKDFNKAEDLDPENPDVYYHRGQMRF-LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ-------HKIAE 446 (606)
T ss_pred ccHHHHHHHHHHHhcCCCCCchhHhHHHHHH-HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH-------HHHHH
Confidence 366777777777765 47777777777777 6677777777777777665 444555665443321 13566
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCH
Q 018965 156 GVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFF 205 (348)
Q Consensus 156 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~ 205 (348)
++..|+.+-.. ..++.....|.++.+ .++..+|.+.|.+|.+....
T Consensus 447 ~m~~Fee~kkkFP~~~Evy~~fAeiLtD----qqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 447 SMKTFEEAKKKFPNCPEVYNLFAEILTD----QQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHhh----HHhHHHHHHHHHHHHhhccc
Confidence 66777776654 455555666666665 67888999999999887664
No 124
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=87.79 E-value=0.2 Score=34.88 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=30.1
Q ss_pred ccccCCCCCceeecChHHHHHhchhhchhcCCCCCC
Q 018965 287 EYRRCSVCGKVNYCSRACQAIDWKTRHKRECVPPLA 322 (348)
Q Consensus 287 ~l~~C~~C~~~~YCs~~CQ~~~W~~~Hk~~C~~~~~ 322 (348)
.-..|+.|....|||++.=+.|-.. |++.|..++.
T Consensus 13 v~~~Cp~cGipthcS~ehw~~D~e~-H~~~c~~LRq 47 (55)
T PF13824_consen 13 VNFECPDCGIPTHCSEEHWEDDYEE-HRQLCERLRQ 47 (55)
T ss_pred cCCcCCCCCCcCccCHHHHHHhHHH-HHHHHHHHHH
Confidence 3467999999999999998888886 9999987775
No 125
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=87.65 E-value=2.6 Score=30.12 Aligned_cols=51 Identities=10% Similarity=0.047 Sum_probs=30.4
Q ss_pred ccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCC
Q 018965 110 CLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIG 167 (348)
Q Consensus 110 ~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G 167 (348)
..+|+++|+++++++...+ ++.+.+.+|.+|.. ..++.+|++.|+++.+.+
T Consensus 7 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-------~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 7 QQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-------LGRYEEALEDLERALELS 59 (73)
T ss_pred hCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-------hccHHHHHHHHHHHHHHC
Confidence 4556666666666666553 45566666666643 225666666666666543
No 126
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=87.55 E-value=1.8 Score=42.58 Aligned_cols=104 Identities=17% Similarity=0.094 Sum_probs=72.2
Q ss_pred HHHCCCH----HHHHHhhhhhhhccCCHHHHHHHHHHH----HhCCC----HHHHHHHHHHHHccCCCCCCccCHHHHHH
Q 018965 91 CVFAGNL----EACYTLGMIRFYCLQNRSSGTSLMAKA----AMKSH----APALYSLAVIQFNGSGGGKNEKDLRAGVA 158 (348)
Q Consensus 91 aA~~G~~----~A~~~Lg~~y~~~~~d~~~A~~~~~~A----A~~G~----~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~ 158 (348)
|-+-|+- .|.-+||..|. .-.+.+.|+++|+++ .+.|+ ++.+|.||.-|.. -+++++|+.
T Consensus 225 a~efGDrAaeRRA~sNlgN~hi-flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl-------l~e~~kAI~ 296 (639)
T KOG1130|consen 225 AQEFGDRAAERRAHSNLGNCHI-FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL-------LKEVQKAIT 296 (639)
T ss_pred HHHhhhHHHHHHhhcccchhhh-hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH-------HHHHHHHHH
Confidence 4455554 46678888887 567888999998874 45664 5678999988864 367899999
Q ss_pred HHHHH----Hh----CCCHHHHHHHHHHHhccCCCCCCHHHHHHHHH----HHHhcCCHH
Q 018965 159 LCARA----AS----IGHVDAVRELGHCLQDGYGVRQNIEKGRRLLI----EANAREFFQ 206 (348)
Q Consensus 159 ~~~kA----A~----~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~----~Aa~~G~~~ 206 (348)
|+.+= -+ -|...|+|.||..|..=. +..+|+++.+ .+-+-++..
T Consensus 297 Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg----~h~kAl~fae~hl~~s~ev~D~s 352 (639)
T KOG1130|consen 297 YHQRHLAIAQELEDRIGELRACWSLGNAFNALG----EHRKALYFAELHLRSSLEVNDTS 352 (639)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHhCCcc
Confidence 98762 22 488899999999986533 3445555544 445555543
No 127
>PRK15331 chaperone protein SicA; Provisional
Probab=87.49 E-value=5.9 Score=34.18 Aligned_cols=84 Identities=15% Similarity=0.109 Sum_probs=65.7
Q ss_pred ccCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCC
Q 018965 110 CLQNRSSGTSLMAKAAMKSH--APALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGV 185 (348)
Q Consensus 110 ~~~d~~~A~~~~~~AA~~G~--~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv 185 (348)
..++.+.|...|+--.-.++ ++=...||.++. ..+++++|+..|..|+.. .++...|.+|.+|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q-------~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~---- 117 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQ-------LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL---- 117 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH----
Confidence 56677788888877776554 444455666664 456899999999999864 789999999999985
Q ss_pred CCCHHHHHHHHHHHHhcCC
Q 018965 186 RQNIEKGRRLLIEANAREF 204 (348)
Q Consensus 186 ~~d~~~A~~w~~~Aa~~G~ 204 (348)
-.|...|+..|..|.++-.
T Consensus 118 l~~~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 118 MRKAAKARQCFELVNERTE 136 (165)
T ss_pred hCCHHHHHHHHHHHHhCcc
Confidence 5699999999999998533
No 128
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=87.29 E-value=1.1 Score=31.59 Aligned_cols=49 Identities=16% Similarity=0.227 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965 152 DLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF 204 (348)
Q Consensus 152 d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~ 204 (348)
|+++|++.|+++... ++.++.+.|+.+|.. ..++++|..+++++.....
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLK----QGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH----TT-HHHHHHHHHCCHGGGT
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCc
Confidence 667777777776543 567777777777665 4567777777776655444
No 129
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=87.28 E-value=1.8 Score=30.55 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK 127 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~ 127 (348)
.++|+..|+++.+. +|+++.+.||.+|+ ..++.++|..++++....
T Consensus 7 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 7 YDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGG
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 34555555554442 35555555555555 344555555555554443
No 130
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.96 E-value=1.1 Score=27.03 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=16.0
Q ss_pred HHHHHhhhhhhhccCCHHHHHHHHHHHHh
Q 018965 98 EACYTLGMIRFYCLQNRSSGTSLMAKAAM 126 (348)
Q Consensus 98 ~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~ 126 (348)
++.+++|.+|+ ..++.++|+..|++|.+
T Consensus 2 ~~~~~~g~~~~-~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYF-QLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhCCchHHHHHHHHHHH
Confidence 45566666665 45566666666666544
No 131
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=86.76 E-value=10 Score=34.95 Aligned_cols=94 Identities=15% Similarity=0.029 Sum_probs=76.4
Q ss_pred cCcHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCH
Q 018965 78 KNWSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDL 153 (348)
Q Consensus 78 ~~~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~ 153 (348)
......|..-+++++.. .|.++...||.+|. --.+.+.|..-|.+|.+. +.+....|||+.|.- .-|.
T Consensus 113 ~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-------~gd~ 184 (257)
T COG5010 113 NGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-------RGDL 184 (257)
T ss_pred hcchHHHHHHHHHHhccCCCChhhhhHHHHHHH-HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-------cCCH
Confidence 33488999999999986 58889999999998 567888899999998875 689999999999863 3388
Q ss_pred HHHHHHHHHHHhCCC--HHHHHHHHHHH
Q 018965 154 RAGVALCARAASIGH--VDAVRELGHCL 179 (348)
Q Consensus 154 ~~A~~~~~kAA~~G~--~~A~~~Lg~~y 179 (348)
+.|..++..|...+. ...-.+|+...
T Consensus 185 ~~A~~lll~a~l~~~ad~~v~~NLAl~~ 212 (257)
T COG5010 185 EDAETLLLPAYLSPAADSRVRQNLALVV 212 (257)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 999999999998864 55566676654
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=86.73 E-value=5 Score=33.24 Aligned_cols=76 Identities=18% Similarity=0.108 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHHHHCC-CH----HHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHccCCCCCCccCH
Q 018965 80 WSDSAHRFLKRCVFAG-NL----EACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-HAPALYSLAVIQFNGSGGGKNEKDL 153 (348)
Q Consensus 80 ~~~~A~~~~~kaA~~G-~~----~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-~~~A~~~Lg~~y~~G~g~~~~~~d~ 153 (348)
..++|...|+++.+.. ++ .+.+.|+.+++ ..+++++|+..++...... .+.+...+|.+|.. .| |.
T Consensus 63 ~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~-~g------~~ 134 (145)
T PF09976_consen 63 DYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQYDEALATLQQIPDEAFKALAAELLGDIYLA-QG------DY 134 (145)
T ss_pred CHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHH-CC------CH
Confidence 3789999999999876 33 47788888887 6789999999997754333 34577788888864 34 78
Q ss_pred HHHHHHHHHH
Q 018965 154 RAGVALCARA 163 (348)
Q Consensus 154 ~~A~~~~~kA 163 (348)
++|..-|++|
T Consensus 135 ~~A~~~y~~A 144 (145)
T PF09976_consen 135 DEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHh
Confidence 9999999887
No 133
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=86.44 E-value=5.3 Score=40.77 Aligned_cols=91 Identities=15% Similarity=0.116 Sum_probs=68.5
Q ss_pred HHHHhhhhhhhccCCHHHHHHHHHHHHhC-------CCHH---HHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh---
Q 018965 99 ACYTLGMIRFYCLQNRSSGTSLMAKAAMK-------SHAP---ALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS--- 165 (348)
Q Consensus 99 A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~-------G~~~---A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~--- 165 (348)
....|+.+|. ...++++|+.+++.|.+. .|+. .+-.+|.+|.. ...+.+|+..|++|-.
T Consensus 201 ~~~~La~~y~-~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~-------~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 201 TLRNLAEMYA-VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS-------LGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred HHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH-------hccHHHHHHHHHHHHHHHH
Confidence 4556888887 788999999999999988 5543 44458999963 3468999999999865
Q ss_pred --CC--C---HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965 166 --IG--H---VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA 201 (348)
Q Consensus 166 --~G--~---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~ 201 (348)
.| | +..+.+|+.+|.. ..+..+|..++++|.+
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~----~GKf~EA~~~~e~Al~ 311 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYK----QGKFAEAEEYCERALE 311 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhc----cCChHHHHHHHHHHHH
Confidence 23 2 3477889999843 4578888888888753
No 134
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.35 E-value=5.3 Score=35.59 Aligned_cols=91 Identities=14% Similarity=0.133 Sum_probs=65.6
Q ss_pred HHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHH
Q 018965 88 LKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS---HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAA 164 (348)
Q Consensus 88 ~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G---~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA 164 (348)
.+.-....+|...| |.-..-+.+.|+.-|.++..++ +++-|+.||..| +.+|..|+..+|.++-
T Consensus 101 ~~~tk~S~dP~llY-----y~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY--------~krD~~Kt~~ll~~~L 167 (203)
T PF11207_consen 101 QEETKNSQDPYLLY-----YHWSRFGDQEALRRFLQLEGTPELETAELQYALATYY--------TKRDPEKTIQLLLRAL 167 (203)
T ss_pred HHHHccCCCccHHH-----HHhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHH--------HccCHHHHHHHHHHHH
Confidence 33344445665433 1124446677888887777666 789999999999 6789999999999997
Q ss_pred hC---C---CHHHHHHHHHHHhccCCCCCCHHHHHHH
Q 018965 165 SI---G---HVDAVRELGHCLQDGYGVRQNIEKGRRL 195 (348)
Q Consensus 165 ~~---G---~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w 195 (348)
+. + |++-...|+.+|.. .++.++|.-|
T Consensus 168 ~l~~~~~~~n~eil~sLas~~~~----~~~~e~AYiw 200 (203)
T PF11207_consen 168 ELSNPDDNFNPEILKSLASIYQK----LKNYEQAYIW 200 (203)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHH----hcchhhhhhh
Confidence 64 2 57788888888875 5677777766
No 135
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=86.03 E-value=14 Score=33.86 Aligned_cols=76 Identities=11% Similarity=0.012 Sum_probs=54.1
Q ss_pred CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--C---HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC----
Q 018965 96 NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--H---APALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI---- 166 (348)
Q Consensus 96 ~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~---~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~---- 166 (348)
+++..|..|.-++ ..+|.++|+..|++....- . ..|++.||..|.. ..|+.+|..+|++..+.
T Consensus 31 ~~~~~Y~~A~~~~-~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-------~~~y~~A~~~~e~fi~~~P~~ 102 (243)
T PRK10866 31 PPSEIYATAQQKL-QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-------NADLPLAQAAIDRFIRLNPTH 102 (243)
T ss_pred CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHhCcCC
Confidence 4444555555555 5678888888888887652 2 2456888888864 34789999999998875
Q ss_pred -CCHHHHHHHHHHH
Q 018965 167 -GHVDAVRELGHCL 179 (348)
Q Consensus 167 -G~~~A~~~Lg~~y 179 (348)
..+.|+|.+|..+
T Consensus 103 ~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 103 PNIDYVLYMRGLTN 116 (243)
T ss_pred CchHHHHHHHHHhh
Confidence 4567889998763
No 136
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=85.88 E-value=4.3 Score=44.07 Aligned_cols=126 Identities=17% Similarity=0.067 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
++++++-.+|+.+. +|..|++.||..+...++|.++|.+-|..||+.. +.-|.--|+.+|.. .. .--+..++
T Consensus 18 YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~-~~---dIl~ld~~ 93 (1238)
T KOG1127|consen 18 YEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYER-YN---DILDLDRA 93 (1238)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHc-cc---hhhhhhHh
Confidence 78899998888764 6889999999999888899999999999999874 56688889999976 22 34578889
Q ss_pred HHHHHHHHhCCCHHH---HHHHHHHHhcc-CCCCCCHHHHHHHHHHHHhcCCHHHHHh
Q 018965 157 VALCARAASIGHVDA---VRELGHCLQDG-YGVRQNIEKGRRLLIEANAREFFQSVSK 210 (348)
Q Consensus 157 ~~~~~kAA~~G~~~A---~~~Lg~~y~~G-~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~ 210 (348)
...|.+++..-..+. .-.|-.-|-+- .-..+-...|..|-+.+.-..+..+++.
T Consensus 94 ~~~yq~~~l~le~q~~nk~~~lcKk~~d~~~~fk~hll~a~eigei~~trq~~se~N~ 151 (1238)
T KOG1127|consen 94 AKCYQRAVLILENQSKNKGEALCKKFDDQYYQFKKHLLVAKEIGEIAVTRQDASEKNP 151 (1238)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHhchHhhhhhCH
Confidence 999998876532222 11111111110 1122223336666666666555555544
No 137
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.84 E-value=2 Score=25.71 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965 170 DAVRELGHCLQDGYGVRQNIEKGRRLLIEANA 201 (348)
Q Consensus 170 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~ 201 (348)
.+.+.||.+|.. ..+.++|+++|++|.+
T Consensus 2 ~~~~~lg~~~~~----~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQ----LGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHH----TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHH
Confidence 456677776665 5577777777777764
No 138
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=85.62 E-value=9.5 Score=31.91 Aligned_cols=88 Identities=14% Similarity=-0.008 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCCC----H--HHHHHHHHHHhccC
Q 018965 112 QNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGH----V--DAVRELGHCLQDGY 183 (348)
Q Consensus 112 ~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G~----~--~A~~~Lg~~y~~G~ 183 (348)
.+.+.|++.|.+|...- .+.|+.+=+..|.. ..|+++|++=+.+|.+.-. + .|...-|.+|+.
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-------q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl-- 127 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRL-------QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL-- 127 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHH-------cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH--
Confidence 34455555555555442 34455555554431 2244555555555554311 1 133344555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHh
Q 018965 184 GVRQNIEKGRRLLIEANAREFFQSVSK 210 (348)
Q Consensus 184 Gv~~d~~~A~~w~~~Aa~~G~~~A~~~ 210 (348)
.-|.+.|+.=|+.||+.|.+.|...
T Consensus 128 --~g~dd~AR~DFe~AA~LGS~FAr~Q 152 (175)
T KOG4555|consen 128 --LGNDDAARADFEAAAQLGSKFAREQ 152 (175)
T ss_pred --hCchHHHHHhHHHHHHhCCHHHHHH
Confidence 2355566666666666666666554
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=85.40 E-value=15 Score=36.35 Aligned_cols=101 Identities=14% Similarity=0.205 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHH
Q 018965 81 SDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVA 158 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~ 158 (348)
.+.|..+|++..+. +|+..+.|+.+++ ...+..+|++++.++.... +.......+..+.. ..+++.|+.
T Consensus 185 ~~~ai~lle~L~~~-~pev~~~LA~v~l-~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-------k~~~~lAL~ 255 (395)
T PF09295_consen 185 YDEAIELLEKLRER-DPEVAVLLARVYL-LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-------KKKYELALE 255 (395)
T ss_pred HHHHHHHHHHHHhc-CCcHHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------cCCHHHHHH
Confidence 68899999997655 4889999999998 3456789999999999754 45555555666643 236799999
Q ss_pred HHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHH
Q 018965 159 LCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRR 194 (348)
Q Consensus 159 ~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~ 194 (348)
..++|.+. .+....+.|+.+|.. ..|.+.|+.
T Consensus 256 iAk~av~lsP~~f~~W~~La~~Yi~----~~d~e~ALl 289 (395)
T PF09295_consen 256 IAKKAVELSPSEFETWYQLAECYIQ----LGDFENALL 289 (395)
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHh----cCCHHHHHH
Confidence 99999987 567899999999975 457777764
No 140
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=85.16 E-value=19 Score=38.21 Aligned_cols=114 Identities=16% Similarity=0.132 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHH--HhCCCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKA--AMKSHAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~A--A~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.+++...+..|...- .+..+|..|.++. +.+...+|.+-|.-| .+-+|++++..||.+|..+.. +.....
T Consensus 666 ~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~-~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~-----~~la~~ 739 (799)
T KOG4162|consen 666 DDEARSCLLEASKIDPLSASVYYLRGLLLE-VKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS-----PRLAEK 739 (799)
T ss_pred chHHHHHHHHHHhcchhhHHHHHHhhHHHH-HHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-----cchHHH
Confidence 455555555554433 2345677788877 677788888888665 466799999999999987531 234444
Q ss_pred HHHHHHHHhCC--CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965 157 VALCARAASIG--HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF 204 (348)
Q Consensus 157 ~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~ 204 (348)
...+..|.+.+ +.+|-|+||.++.. .-|..+|...|.-|.+...
T Consensus 740 ~~~L~dalr~dp~n~eaW~~LG~v~k~----~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 740 RSLLSDALRLDPLNHEAWYYLGEVFKK----LGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH----ccchHHHHHHHHHHHhhcc
Confidence 45888888875 89999999998875 3478899999998876443
No 141
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=84.78 E-value=1.4 Score=27.41 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=13.1
Q ss_pred HHHhhhhhhhccCCHHHHHHHHHHH
Q 018965 100 CYTLGMIRFYCLQNRSSGTSLMAKA 124 (348)
Q Consensus 100 ~~~Lg~~y~~~~~d~~~A~~~~~~A 124 (348)
+.+||.+|. ..+|+++|+.+|++|
T Consensus 2 l~~Lg~~~~-~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYR-QQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHH-HCT-HHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 445555555 455666666666663
No 142
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.91 E-value=5.4 Score=34.96 Aligned_cols=60 Identities=12% Similarity=0.039 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHC--CCHHHHHHhhhhhh--hccCC-------HHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Q 018965 82 DSAHRFLKRCVFA--GNLEACYTLGMIRF--YCLQN-------RSSGTSLMAKAAM--KSHAPALYSLAVIQF 141 (348)
Q Consensus 82 ~~A~~~~~kaA~~--G~~~A~~~Lg~~y~--~~~~d-------~~~A~~~~~~AA~--~G~~~A~~~Lg~~y~ 141 (348)
+.|.+-++..... -|+++.++-|..++ ..-++ .++|+.=|+.|.. -...+|.+.||..|.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 4455555553333 45667777776655 11222 3344444554443 246778888888774
No 143
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=83.07 E-value=0.98 Score=27.96 Aligned_cols=14 Identities=29% Similarity=0.309 Sum_probs=7.2
Q ss_pred CCHHHHHHhhhhhh
Q 018965 95 GNLEACYTLGMIRF 108 (348)
Q Consensus 95 G~~~A~~~Lg~~y~ 108 (348)
.|+++.++||.+|.
T Consensus 11 ~n~~a~~nla~~~~ 24 (34)
T PF13431_consen 11 NNAEAYNNLANLYL 24 (34)
T ss_pred CCHHHHHHHHHHHH
Confidence 35555555555554
No 144
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.92 E-value=5 Score=38.52 Aligned_cols=118 Identities=14% Similarity=0.096 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.+.|+++|+..+++ .|.+|.--+|.-|+ -..+++.|+.||++--..| +++-..++|.|.+-+.- ++-+
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yf-Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ-------~D~~ 377 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYF-YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQ-------IDLV 377 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccc-cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcc-------hhhh
Confidence 67788888887775 46777666666666 4677888888888888888 67777788888765533 3445
Q ss_pred HHHHHHHHh---C-C-CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh--cCCHHHHHh
Q 018965 157 VALCARAAS---I-G-HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA--REFFQSVSK 210 (348)
Q Consensus 157 ~~~~~kAA~---~-G-~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~--~G~~~A~~~ 210 (348)
+.-|++|-. + | -.+--|+||.+.- + .-|...|.+.|+.|-- ..|.+|.++
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV-~---iGD~nlA~rcfrlaL~~d~~h~ealnN 434 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAV-T---IGDFNLAKRCFRLALTSDAQHGEALNN 434 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEE-e---ccchHHHHHHHHHHhccCcchHHHHHh
Confidence 555655532 2 1 2445677765432 2 2377888888888754 345566665
No 145
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.61 E-value=45 Score=31.00 Aligned_cols=116 Identities=14% Similarity=0.033 Sum_probs=74.3
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHhhhhhh--hccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965 80 WSDSAHRFLKRCVFAGNLEACYTLGMIRF--YCLQNRSSGTSLMAKAAM--KSHAPALYSLAVIQFNGSGGGKNEKDLRA 155 (348)
Q Consensus 80 ~~~~A~~~~~kaA~~G~~~A~~~Lg~~y~--~~~~d~~~A~~~~~~AA~--~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~ 155 (348)
..++|.++|..-.+..-.+.-..-=.+-. ...++ ..|++-+..=-+ .++.+|...|+.+|.. ..++++
T Consensus 101 ~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~-l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-------~~~f~k 172 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN-LEAIKELNEYLDKFMNDQEAWHELAEIYLS-------EGDFEK 172 (289)
T ss_pred chhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-------HhHHHH
Confidence 37788899888776654333332222211 11222 234433322222 4799999999999973 458999
Q ss_pred HHHHHHHHHhCC--CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965 156 GVALCARAASIG--HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF 204 (348)
Q Consensus 156 A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~ 204 (348)
|..+|+.-.-.- ++--.-.||..+..-.| ..|++-|+++|.+|.+...
T Consensus 173 A~fClEE~ll~~P~n~l~f~rlae~~Yt~gg-~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 173 AAFCLEELLLIQPFNPLYFQRLAEVLYTQGG-AENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhCh
Confidence 999999877543 33344467776655444 5699999999999988765
No 146
>PLN03218 maturation of RBCL 1; Provisional
Probab=81.50 E-value=85 Score=35.29 Aligned_cols=49 Identities=14% Similarity=0.135 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHhCCC---HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965 152 DLRAGVALCARAASIGH---VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF 204 (348)
Q Consensus 152 d~~~A~~~~~kAA~~G~---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~ 204 (348)
+.++|.++|....+.|. ......|.. +.+-..+.++|...|....+.|.
T Consensus 629 ~~deAl~lf~eM~~~Gv~PD~~TynsLI~----a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 629 DWDFALSIYDDMKKKGVKPDEVFFSALVD----VAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhCCCHHHHHHHHHHHHHcCC
Confidence 44555555555555442 112222222 22234567777777777777664
No 147
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=80.74 E-value=23 Score=29.68 Aligned_cols=90 Identities=14% Similarity=-0.027 Sum_probs=75.8
Q ss_pred cHHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCH------HHHHHHHHHHHccCCCCCCcc
Q 018965 80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHA------PALYSLAVIQFNGSGGGKNEK 151 (348)
Q Consensus 80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~------~A~~~Lg~~y~~G~g~~~~~~ 151 (348)
..+.|++.|.++... .++.|+.+-++.|. ..++.++|++=+.+|.+.-.+ +|..+=|.+|. ..-
T Consensus 58 ~Ld~AlE~F~qal~l~P~raSayNNRAQa~R-Lq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR-------l~g 129 (175)
T KOG4555|consen 58 DLDGALELFGQALCLAPERASAYNNRAQALR-LQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR-------LLG 129 (175)
T ss_pred chHHHHHHHHHHHHhcccchHhhccHHHHHH-HcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH-------HhC
Confidence 378999999999886 48889999999988 899999999999999987543 46677788885 456
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHH
Q 018965 152 DLRAGVALCARAASIGHVDAVRELGH 177 (348)
Q Consensus 152 d~~~A~~~~~kAA~~G~~~A~~~Lg~ 177 (348)
|.++|..=|+.||+.|++.|-..|-.
T Consensus 130 ~dd~AR~DFe~AA~LGS~FAr~QLV~ 155 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKFAREQLVE 155 (175)
T ss_pred chHHHHHhHHHHHHhCCHHHHHHHHh
Confidence 78899999999999999999887743
No 148
>PLN02789 farnesyltranstransferase
Probab=80.47 E-value=37 Score=32.47 Aligned_cols=95 Identities=13% Similarity=0.028 Sum_probs=43.1
Q ss_pred HHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcc--CCCCCCccCHHHHH
Q 018965 84 AHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNG--SGGGKNEKDLRAGV 157 (348)
Q Consensus 84 A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G--~g~~~~~~d~~~A~ 157 (348)
++.++.++.+. .|..|.+..|.++. .-++.+++++++.++.+. .+..|.+..+.++... .|+ .....+..+
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~-~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~--~~~~~e~el 203 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLR-TLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG--LEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc--ccccHHHHH
Confidence 34444444332 24444444444433 223355555555555543 2455555555554332 011 222334455
Q ss_pred HHHHHHHhC--CCHHHHHHHHHHHhc
Q 018965 158 ALCARAASI--GHVDAVRELGHCLQD 181 (348)
Q Consensus 158 ~~~~kAA~~--G~~~A~~~Lg~~y~~ 181 (348)
.+..++... .|..|-++++.+|..
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 555555533 445555555555544
No 149
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.12 E-value=7.9 Score=33.92 Aligned_cols=90 Identities=14% Similarity=0.110 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCC---CccCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhc-cCCCC
Q 018965 115 SSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGK---NEKDLRAGVALCARAAS--IGHVDAVRELGHCLQD-GYGVR 186 (348)
Q Consensus 115 ~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~---~~~d~~~A~~~~~kAA~--~G~~~A~~~Lg~~y~~-G~Gv~ 186 (348)
+.|.+-++...... ++++.++.|..++.=.-... ..+=+++|+.=|+.|-. -...+|.+.||..|.. |. ..
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~-l~ 86 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF-LT 86 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH-H-
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh-hc
Confidence 45566666544443 67888998877754311000 01124555555666554 4678999999997743 43 23
Q ss_pred CCH-------HHHHHHHHHHHhcCCH
Q 018965 187 QNI-------EKGRRLLIEANAREFF 205 (348)
Q Consensus 187 ~d~-------~~A~~w~~~Aa~~G~~ 205 (348)
.|. ++|..+|++|.+..-.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPN 112 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344 4455555555544443
No 150
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.07 E-value=3.3 Score=24.83 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=13.3
Q ss_pred HHHHhhhhhhhccCCHHHHHHHHHHHH
Q 018965 99 ACYTLGMIRFYCLQNRSSGTSLMAKAA 125 (348)
Q Consensus 99 A~~~Lg~~y~~~~~d~~~A~~~~~~AA 125 (348)
+.+.+|.+|. ..+|.++|++.|+++.
T Consensus 3 ~~~~lg~~y~-~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYE-QLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHH-HTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence 4455555554 3445555555555543
No 151
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=80.00 E-value=3.8 Score=25.39 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=18.5
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 018965 171 AVRELGHCLQDGYGVRQNIEKGRRLLIEAN 200 (348)
Q Consensus 171 A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa 200 (348)
|..+||.+|.. ..|.++|+.+|++|.
T Consensus 1 al~~Lg~~~~~----~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQ----QGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHH----CT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 45678888876 568888888888854
No 152
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=79.89 E-value=24 Score=34.49 Aligned_cols=119 Identities=19% Similarity=0.137 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHC--CCHHH------HHHhhhhhhhccCCHHHHHHHHHHHHhC------CCH------HHHHHHHHHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEA------CYTLGMIRFYCLQNRSSGTSLMAKAAMK------SHA------PALYSLAVIQ 140 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A------~~~Lg~~y~~~~~d~~~A~~~~~~AA~~------G~~------~A~~~Lg~~y 140 (348)
.+++++.|++|-.- .+.++ +..||.+| +.-+|.+||+-+..+|++. |+. -++|.|++.|
T Consensus 138 fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf-~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVal 216 (518)
T KOG1941|consen 138 FQKALESFEKALRYAHNNDDAMLELQVCVSLGSLF-AQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVAL 216 (518)
T ss_pred HHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHH-HHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHH
Confidence 57888888887553 22233 33444444 4678999999999999975 333 3566666666
Q ss_pred H-ccCCCCCCccCHHHHH-HHHHHHHhCCC----HHHHHHHHHHHhccCCCCCCHHHHHHHHHHH----HhcCCHHHHH
Q 018965 141 F-NGSGGGKNEKDLRAGV-ALCARAASIGH----VDAVRELGHCLQDGYGVRQNIEKGRRLLIEA----NAREFFQSVS 209 (348)
Q Consensus 141 ~-~G~g~~~~~~d~~~A~-~~~~kAA~~G~----~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~A----a~~G~~~A~~ 209 (348)
. .|.-| |..++- +-.+.|.+.|| +..+.-+|.+|++ .-|.+.|+.-|+.| +..||--+|-
T Consensus 217 R~~G~Lg-----dA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~----~gd~e~af~rYe~Am~~m~~~gdrmgqv 286 (518)
T KOG1941|consen 217 RLLGRLG-----DAMECCEEAMKLALQHGDRALQARCLLCFADIYRS----RGDLERAFRRYEQAMGTMASLGDRMGQV 286 (518)
T ss_pred HHhcccc-----cHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh----cccHhHHHHHHHHHHHHHhhhhhhHHHH
Confidence 4 34321 222211 12233455676 4566778999987 45788888888887 4556655544
No 153
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=79.75 E-value=7.4 Score=27.65 Aligned_cols=53 Identities=15% Similarity=0.109 Sum_probs=45.0
Q ss_pred ccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHH
Q 018965 150 EKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQ 206 (348)
Q Consensus 150 ~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~ 206 (348)
.+|+++|.++++++... .++...+.+|.+|.. ..++.+|...|+++.+.+...
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQ----LGRYEEALEDLERALELSPDD 62 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH----hccHHHHHHHHHHHHHHCCCc
Confidence 46899999999999886 578889999999886 569999999999998776643
No 154
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=79.34 E-value=20 Score=36.67 Aligned_cols=108 Identities=12% Similarity=0.059 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHCCC--HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFAGN--LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G~--~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
+.+|.++|-||..... .+|...+|..|. .+...++|+.-|..|+.. |...-...||+-|. .-.|.+.|
T Consensus 328 ~seARry~SKat~lD~~fgpaWl~fghsfa-~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~-------~t~n~kLA 399 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFGPAWLAFGHSFA-GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYM-------RTNNLKLA 399 (611)
T ss_pred cHHHHHHHHHHhhcCccccHHHHHHhHHhh-hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHH-------HhccHHHH
Confidence 7899999999987765 456777777776 788889999999999974 77777888898884 23478999
Q ss_pred HHHHHHHHh--CCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 018965 157 VALCARAAS--IGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEAN 200 (348)
Q Consensus 157 ~~~~~kAA~--~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa 200 (348)
-++|..|-. .-++--..++|.++.+ ...+.+|..||+.+-
T Consensus 400 e~Ff~~A~ai~P~Dplv~~Elgvvay~----~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 400 EKFFKQALAIAPSDPLVLHELGVVAYT----YEEYPEALKYFQKAL 441 (611)
T ss_pred HHHHHHHHhcCCCcchhhhhhhheeeh----HhhhHHHHHHHHHHH
Confidence 999999876 4678888899987764 568899999999997
No 155
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=78.61 E-value=11 Score=38.63 Aligned_cols=73 Identities=11% Similarity=-0.066 Sum_probs=56.6
Q ss_pred CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCCCHHHHH
Q 018965 95 GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVR 173 (348)
Q Consensus 95 G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G~~~A~~ 173 (348)
.++.++..+|.++. ..++.++|...|++|.+.. +..+++.+|.+|.. .| ++++|+++|++|....-..--|
T Consensus 418 ~~~~~~~ala~~~~-~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~-~G------~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 418 VLPRIYEILAVQAL-VKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYEL-KG------DNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred CChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-cC------CHHHHHHHHHHHHhcCCCCchH
Confidence 46688888888887 5789999999999999887 46677788888864 34 6899999999999875433334
Q ss_pred HH
Q 018965 174 EL 175 (348)
Q Consensus 174 ~L 175 (348)
.|
T Consensus 490 ~~ 491 (517)
T PRK10153 490 YW 491 (517)
T ss_pred HH
Confidence 33
No 156
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=78.55 E-value=27 Score=33.00 Aligned_cols=111 Identities=15% Similarity=0.025 Sum_probs=72.8
Q ss_pred cHHHHHHHHHHHHHC--CCHHHHHHhhhhhh--h-ccCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHccCCCCCCcc
Q 018965 80 WSDSAHRFLKRCVFA--GNLEACYTLGMIRF--Y-CLQNRSSGTSLMAKAAMKSH---APALYSLAVIQFNGSGGGKNEK 151 (348)
Q Consensus 80 ~~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~--~-~~~d~~~A~~~~~~AA~~G~---~~A~~~Lg~~y~~G~g~~~~~~ 151 (348)
..++|..+++++.+. .++.+... +..++ + .......+.+.+.. ....+ ..+...+|.++.. .|
T Consensus 58 ~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~-~G------ 128 (355)
T cd05804 58 DLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEE-AG------ 128 (355)
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHH-cC------
Confidence 478999999998875 34445443 33333 2 12333344444443 22233 3455566777752 34
Q ss_pred CHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965 152 DLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE 203 (348)
Q Consensus 152 d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G 203 (348)
++.+|...++++.+. .++.+...||.+|.. ..+.++|+.+++++.+..
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~----~g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEM----QGRFKEGIAFMESWRDTW 178 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHhhhhcc
Confidence 789999999999876 467788999998765 448899999999988753
No 157
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=78.30 E-value=1.9 Score=35.79 Aligned_cols=27 Identities=41% Similarity=0.969 Sum_probs=22.1
Q ss_pred ccCCCCCceeecChHHHHHhchhhchh--cCCCCC
Q 018965 289 RRCSVCGKVNYCSRACQAIDWKTRHKR--ECVPPL 321 (348)
Q Consensus 289 ~~C~~C~~~~YCs~~CQ~~~W~~~Hk~--~C~~~~ 321 (348)
.+|+.|. +.|||..| |+. ||. .|.+..
T Consensus 18 YKCpkC~-vPYCSl~C----fKi-Hk~tPq~~~ve 46 (157)
T KOG2857|consen 18 YKCPKCS-VPYCSLPC----FKI-HKSTPQCETVE 46 (157)
T ss_pred ccCCCCC-Cccccchh----hhh-ccCCccccccC
Confidence 7899997 88999999 776 888 676655
No 158
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.22 E-value=2.3 Score=25.15 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=11.3
Q ss_pred HHHHhhhhhhhccCCHHHHHHHHHHH
Q 018965 99 ACYTLGMIRFYCLQNRSSGTSLMAKA 124 (348)
Q Consensus 99 A~~~Lg~~y~~~~~d~~~A~~~~~~A 124 (348)
|+|.+|.+|. ..++.++|+..|++.
T Consensus 2 a~~~~a~~~~-~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 2 ALYRLARCYY-KLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHHHHHHHHH-HHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HccCHHHHHHHHHHH
Confidence 4444444444 234444444444443
No 159
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=77.49 E-value=27 Score=38.21 Aligned_cols=75 Identities=15% Similarity=0.071 Sum_probs=57.5
Q ss_pred HHHHHHH-HHHHCC-CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHH
Q 018965 83 SAHRFLK-RCVFAG-NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVA 158 (348)
Q Consensus 83 ~A~~~~~-kaA~~G-~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~ 158 (348)
.+..++. +-.+.+ +..|.|.||.+|- .-++.++++..|+++.+.. |+.++.+||..|.. . |.++|.+
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Yd-k~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-------~-dL~KA~~ 170 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYA-KLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-------E-DKEKAIT 170 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-------h-hHHHHHH
Confidence 4444444 333333 4569999999997 5678889999999998775 78899999999953 3 8999999
Q ss_pred HHHHHHhC
Q 018965 159 LCARAASI 166 (348)
Q Consensus 159 ~~~kAA~~ 166 (348)
++.+|...
T Consensus 171 m~~KAV~~ 178 (906)
T PRK14720 171 YLKKAIYR 178 (906)
T ss_pred HHHHHHHH
Confidence 99999763
No 160
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.31 E-value=7.8 Score=35.52 Aligned_cols=75 Identities=13% Similarity=0.041 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHCCCHHHHHH-hhhhhhhccCCHHHHHHHHHHHHhCCCHH--------HHHHHHHHHHccCCCCCCccCH
Q 018965 83 SAHRFLKRCVFAGNLEACYT-LGMIRFYCLQNRSSGTSLMAKAAMKSHAP--------ALYSLAVIQFNGSGGGKNEKDL 153 (348)
Q Consensus 83 ~A~~~~~kaA~~G~~~A~~~-Lg~~y~~~~~d~~~A~~~~~~AA~~G~~~--------A~~~Lg~~y~~G~g~~~~~~d~ 153 (348)
+|.++..|+-..-+.--.|. .+..| -..|+.+|++.+++|.+-=.-. -...+|.+|.+ ..+|.
T Consensus 59 kaA~~h~k~~skhDaat~YveA~~cy--kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEs------dl~d~ 130 (288)
T KOG1586|consen 59 KAADLHLKAGSKHDAATTYVEAANCY--KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYES------DLQDF 130 (288)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHh--hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhh------hHHHH
Confidence 44444444433223333332 23334 3558999999999776532111 22367888865 34799
Q ss_pred HHHHHHHHHHHh
Q 018965 154 RAGVALCARAAS 165 (348)
Q Consensus 154 ~~A~~~~~kAA~ 165 (348)
++|+..|++||+
T Consensus 131 ekaI~~YE~Aae 142 (288)
T KOG1586|consen 131 EKAIAHYEQAAE 142 (288)
T ss_pred HHHHHHHHHHHH
Confidence 999999999998
No 161
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=77.17 E-value=51 Score=35.62 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=72.2
Q ss_pred hhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHH
Q 018965 103 LGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHC 178 (348)
Q Consensus 103 Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~ 178 (348)
.+...+ +..|.+.|.+.+.....+. ++.|.|.||.+|.+ .| |.+++...+..||.. ++.+=-..++.+
T Consensus 145 eAN~lf-arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEq-rG------d~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 145 EANNLF-ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQ-RG------DIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHH-HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-cc------cHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 333344 6789999999999999887 68899999999965 34 789999888888764 677877888887
Q ss_pred HhccCCCCCCHHHHHHHHHHHHhcCCHH
Q 018965 179 LQDGYGVRQNIEKGRRLLIEANAREFFQ 206 (348)
Q Consensus 179 y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~ 206 (348)
... .-++.+|+.+|.+|.......
T Consensus 217 s~~----~~~i~qA~~cy~rAI~~~p~n 240 (895)
T KOG2076|consen 217 SEQ----LGNINQARYCYSRAIQANPSN 240 (895)
T ss_pred HHh----cccHHHHHHHHHHHHhcCCcc
Confidence 764 336899999999998877653
No 162
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=77.13 E-value=54 Score=33.55 Aligned_cols=114 Identities=14% Similarity=0.085 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHH-------CCC---HHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC----------CHHHHHHHHHHH
Q 018965 81 SDSAHRFLKRCVF-------AGN---LEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS----------HAPALYSLAVIQ 140 (348)
Q Consensus 81 ~~~A~~~~~kaA~-------~G~---~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G----------~~~A~~~Lg~~y 140 (348)
.++|..+|+++-+ .-| +.-..+||.+|+ ....+++|.++|++|...- ......+||..|
T Consensus 341 ~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~-~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~ 419 (508)
T KOG1840|consen 341 YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYL-KMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY 419 (508)
T ss_pred hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH
Confidence 4555555555433 233 233456777776 5567788888888887542 245677888888
Q ss_pred HccCCCCCCccCHHHHHHHHHHHHhCCC---HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 018965 141 FNGSGGGKNEKDLRAGVALCARAASIGH---VDAVRELGHCLQDGYGVRQNIEKGRRLLIEAN 200 (348)
Q Consensus 141 ~~G~g~~~~~~d~~~A~~~~~kAA~~G~---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa 200 (348)
..+..-....+=+.++..|+ ++.--++ ...+.+|+..|.. --+++.|..+-.++.
T Consensus 420 ~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~----~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 420 EELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRA----QGNYEAAEELEEKVL 477 (508)
T ss_pred HHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHH----cccHHHHHHHHHHHH
Confidence 76644111223356777777 7766555 4567778888864 337788887777664
No 163
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=76.80 E-value=6.6 Score=23.51 Aligned_cols=28 Identities=18% Similarity=0.162 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965 170 DAVRELGHCLQDGYGVRQNIEKGRRLLIEANA 201 (348)
Q Consensus 170 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~ 201 (348)
.+.+++|.+|.. ..++++|+..|++|.+
T Consensus 2 ~~~~~~g~~~~~----~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQ----LGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHH----TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----hCCchHHHHHHHHHHH
Confidence 455666666654 4566777777776654
No 164
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.68 E-value=4.2 Score=23.95 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh
Q 018965 131 PALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS 165 (348)
Q Consensus 131 ~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~ 165 (348)
+|+|.+|.+|.. .| +.++|...|++..+
T Consensus 1 ~a~~~~a~~~~~-~g------~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 1 DALYRLARCYYK-LG------DYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHH-HC------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH-cc------CHHHHHHHHHHHHH
Confidence 477888888865 33 77888888877654
No 165
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=76.30 E-value=15 Score=32.39 Aligned_cols=98 Identities=17% Similarity=0.128 Sum_probs=67.2
Q ss_pred CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC---
Q 018965 95 GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-----HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--- 166 (348)
Q Consensus 95 G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-----~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--- 166 (348)
.++++.|..|..++ ..+|..+|+..|++-..+- -++|++.+|..|... .|+.+|...|++-.+.
T Consensus 3 ~~~~~lY~~a~~~~-~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~-------~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 3 DTAEALYQKALEAL-QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQ-------GDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp --HHHHHHHHHHHH-HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHT-------T-HHHHHHHHHHHHHH-TT
T ss_pred CCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHCCC
Confidence 45778888898887 7889999999999998752 357999999998753 3789999998887663
Q ss_pred --CCHHHHHHHHHHHhcc-CCC---CCCH---HHHHHHHHHHH
Q 018965 167 --GHVDAVRELGHCLQDG-YGV---RQNI---EKGRRLLIEAN 200 (348)
Q Consensus 167 --G~~~A~~~Lg~~y~~G-~Gv---~~d~---~~A~~w~~~Aa 200 (348)
--+.|+|.+|..+..- .++ .+|. .+|+..|+.-.
T Consensus 75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li 117 (203)
T PF13525_consen 75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI 117 (203)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH
Confidence 2356999999976432 344 4444 34555555544
No 166
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=75.72 E-value=16 Score=36.19 Aligned_cols=90 Identities=20% Similarity=0.234 Sum_probs=62.5
Q ss_pred HHHHHHHHHH----HHHCCCH----HHHHHhhhhhhhccCCHHHHHHHHHH----HHh----CCCHHHHHHHHHHHHccC
Q 018965 81 SDSAHRFLKR----CVFAGNL----EACYTLGMIRFYCLQNRSSGTSLMAK----AAM----KSHAPALYSLAVIQFNGS 144 (348)
Q Consensus 81 ~~~A~~~~~k----aA~~G~~----~A~~~Lg~~y~~~~~d~~~A~~~~~~----AA~----~G~~~A~~~Lg~~y~~G~ 144 (348)
.+.|.+.|++ |.+.||- ..+|.||..|. .-+++++|+.|+.+ |-+ -|...|++.||..|.. .
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt-ll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a-l 328 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT-LLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA-L 328 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-h
Confidence 4667777766 6777874 46799999887 67889999999865 333 3678899999999853 3
Q ss_pred CCCCCccCHHHHHHHHHHHHh----C----CCHHHHHHHHHH
Q 018965 145 GGGKNEKDLRAGVALCARAAS----I----GHVDAVRELGHC 178 (348)
Q Consensus 145 g~~~~~~d~~~A~~~~~kAA~----~----G~~~A~~~Lg~~ 178 (348)
| +-.+|+++.++.-+ - |...|-.+|..+
T Consensus 329 g------~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl 364 (639)
T KOG1130|consen 329 G------EHRKALYFAELHLRSSLEVNDTSGELTARDNLSDL 364 (639)
T ss_pred h------hHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHH
Confidence 3 35677777666543 3 444466666653
No 167
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=75.63 E-value=16 Score=39.98 Aligned_cols=91 Identities=16% Similarity=0.093 Sum_probs=71.4
Q ss_pred ccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCC
Q 018965 110 CLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGV 185 (348)
Q Consensus 110 ~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv 185 (348)
+.+|++++++-.+++-+. +|..|++.||+.+.. .++|+++|.+-|..||+. .+.-|---|+.+|+. .-.
T Consensus 14 ~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~s------l~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~-~~d 86 (1238)
T KOG1127|consen 14 RNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWS------LGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYER-YND 86 (1238)
T ss_pred hhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHh------ccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHc-cch
Confidence 567888999998888866 477899999988876 456889999999999876 578888889999888 555
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH
Q 018965 186 RQNIEKGRRLLIEANAREFFQS 207 (348)
Q Consensus 186 ~~d~~~A~~w~~~Aa~~G~~~A 207 (348)
.-++.++...|.+++..-..+.
T Consensus 87 Il~ld~~~~~yq~~~l~le~q~ 108 (1238)
T KOG1127|consen 87 ILDLDRAAKCYQRAVLILENQS 108 (1238)
T ss_pred hhhhhHhHHHHHHHHHhhhhhh
Confidence 5678888888888876544333
No 168
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=75.57 E-value=13 Score=33.51 Aligned_cols=50 Identities=12% Similarity=0.117 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhCCC--------HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHH
Q 018965 153 LRAGVALCARAASIGH--------VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQ 206 (348)
Q Consensus 153 ~~~A~~~~~kAA~~G~--------~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~ 206 (348)
..+|+++|++|-+..+ ...+|.+|.++.. -.|.++|.+||.+....+...
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rr----lg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRR----LGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHcCCCCC
Confidence 4678888888876533 3466777776654 348889999999998777643
No 169
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=75.17 E-value=23 Score=37.54 Aligned_cols=118 Identities=13% Similarity=0.054 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHC----CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHccCC--CC
Q 018965 81 SDSAHRFLKRCVFA----GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-------HAPALYSLAVIQFNGSG--GG 147 (348)
Q Consensus 81 ~~~A~~~~~kaA~~----G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-------~~~A~~~Lg~~y~~G~g--~~ 147 (348)
..+|+..++++-.. .++..+...+.++....+..+++++|-.+|+... .+.++..+|+.|..--- ..
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 34555566655443 2455566666666667788999999999999832 45688888988854321 00
Q ss_pred CCccC--HHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965 148 KNEKD--LRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 148 ~~~~d--~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
+.++| ..+++.-+++|++. -|+.+.|+|+.-|.. .++++.|..+.+++.+.
T Consensus 453 ~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~----~R~l~sAl~~~~eaL~l 507 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAE----QRQLTSALDYAREALAL 507 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH----HHhHHHHHHHHHHHHHh
Confidence 01222 36888999999875 488999999999874 67888888888888776
No 170
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=74.71 E-value=1.5 Score=36.51 Aligned_cols=38 Identities=29% Similarity=0.693 Sum_probs=29.0
Q ss_pred CCCccccccCCCCCCCCccccccccCCCCCceeecChHHHHHhchh
Q 018965 266 LGNGLRLCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQAIDWKT 311 (348)
Q Consensus 266 ~~~~~~~C~~~~C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~~~W~~ 311 (348)
..|...+|+. ||-.+. ..|-.|. +.|||+.|-..|-.+
T Consensus 114 ~KP~r~fCaV--CG~~S~-----ysC~~CG-~kyCsv~C~~~HneT 151 (156)
T KOG3362|consen 114 FKPLRKFCAV--CGYDSK-----YSCVNCG-TKYCSVRCLKTHNET 151 (156)
T ss_pred CCCcchhhhh--cCCCch-----hHHHhcC-Cceeechhhhhcccc
Confidence 3466678996 776555 6688887 799999999887655
No 171
>PLN02789 farnesyltranstransferase
Probab=74.54 E-value=82 Score=30.12 Aligned_cols=115 Identities=8% Similarity=-0.053 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhhhccC-CHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRFYCLQ-NRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRA 155 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~-d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~ 155 (348)
.++++.++.++.+. .|..+.+..+.++..... ..++++.++.++.+.. +..|.+..|.++..- .+.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l-------~~~~e 160 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTL-------GGWED 160 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-------hhHHH
Confidence 57888999888764 466788877776652222 2366788888887664 677888888887542 25788
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHhcc---CCCCCCHHHHHHHHHHHHhc
Q 018965 156 GVALCARAASI--GHVDAVRELGHCLQDG---YGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 156 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G---~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
+++++.++.+. .|..|.+..+.++... .|.....++.+.+..++...
T Consensus 161 eL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~ 212 (320)
T PLN02789 161 ELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA 212 (320)
T ss_pred HHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh
Confidence 99999999874 6788888888877653 23444556778888888754
No 172
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=74.05 E-value=2.2 Score=25.86 Aligned_cols=27 Identities=56% Similarity=1.295 Sum_probs=17.8
Q ss_pred cccCCCCCCCCccccccccCCCCCceeecChHHHH
Q 018965 272 LCSYSGCGRPETRVHEYRRCSVCGKVNYCSRACQA 306 (348)
Q Consensus 272 ~C~~~~C~~~~~~~~~l~~C~~C~~~~YCs~~CQ~ 306 (348)
.|.. |+.... .+|.+|. ..|||.+|-+
T Consensus 4 ~C~v--C~~~~k-----Y~Cp~C~-~~~CSl~C~k 30 (30)
T PF04438_consen 4 LCSV--CGNPAK-----YRCPRCG-ARYCSLACYK 30 (30)
T ss_dssp EETS--SSSEES-----EE-TTT---EESSHHHHH
T ss_pred CCcc--CcCCCE-----EECCCcC-CceeCcEeEC
Confidence 5765 776444 7899998 5699999964
No 173
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.96 E-value=8.9 Score=22.79 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh
Q 018965 131 PALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS 165 (348)
Q Consensus 131 ~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~ 165 (348)
++.+.+|.+|.. .| |.++|++.|+++.+
T Consensus 2 ~~~~~lg~~y~~-~~------~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQ-LG------DYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHH-TT------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cC------CHHHHHHHHHHHHh
Confidence 567888888864 44 78888888888765
No 174
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=72.50 E-value=6.6 Score=24.36 Aligned_cols=26 Identities=15% Similarity=0.027 Sum_probs=13.1
Q ss_pred HHHHhhhhhhhccCCHHHHHHHHHHHH
Q 018965 99 ACYTLGMIRFYCLQNRSSGTSLMAKAA 125 (348)
Q Consensus 99 A~~~Lg~~y~~~~~d~~~A~~~~~~AA 125 (348)
++.+||.+|. ...+.++|..+++++.
T Consensus 4 ~~~~la~~~~-~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYR-AQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHH-HCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hhhhcchhhHHHHHHH
Confidence 4555555555 3355555555555553
No 175
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.54 E-value=29 Score=32.22 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=57.7
Q ss_pred CCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-CHHHH-HHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCCC--H
Q 018965 94 AGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-HAPAL-YSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGH--V 169 (348)
Q Consensus 94 ~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-~~~A~-~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G~--~ 169 (348)
.+|++|...|+.+|+ ..+++++|...|+.-.-.. +.... -.||.+++.-.| -.|..-|.++|.+|.+... .
T Consensus 151 ~~D~EAW~eLaeiY~-~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg----~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 151 MNDQEAWHELAEIYL-SEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG----AENLELARKYYERALKLNPKNL 225 (289)
T ss_pred cCcHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHhChHhH
Confidence 589999999999999 7889999999998876554 33333 378877665434 4689999999999998754 4
Q ss_pred HHHHH
Q 018965 170 DAVRE 174 (348)
Q Consensus 170 ~A~~~ 174 (348)
.++|-
T Consensus 226 ral~G 230 (289)
T KOG3060|consen 226 RALFG 230 (289)
T ss_pred HHHHH
Confidence 44443
No 176
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=71.39 E-value=19 Score=35.34 Aligned_cols=88 Identities=13% Similarity=0.085 Sum_probs=57.5
Q ss_pred CCCHHHHHHhhhhhhhccCCHHHHHHHHHHHH---hCCCHHHHHHHHHHHHc----cCCCCCCccCHHHHHHHHHHHHhC
Q 018965 94 AGNLEACYTLGMIRFYCLQNRSSGTSLMAKAA---MKSHAPALYSLAVIQFN----GSGGGKNEKDLRAGVALCARAASI 166 (348)
Q Consensus 94 ~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA---~~G~~~A~~~Lg~~y~~----G~g~~~~~~d~~~A~~~~~kAA~~ 166 (348)
..+..-+|.+++.....++|.++|+.++.... +.-+++..-.+|.+|-+ +... ......+|+.||++|-+.
T Consensus 178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~--d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFT--DRESLDKAIEWYRKGFEI 255 (374)
T ss_pred chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCcc--chHHHHHHHHHHHHHHcC
Confidence 34444444444444355889999999998843 34467888889988832 2111 345589999999999875
Q ss_pred -CCHHHHHHHHHHH-hccC
Q 018965 167 -GHVDAVRELGHCL-QDGY 183 (348)
Q Consensus 167 -G~~~A~~~Lg~~y-~~G~ 183 (348)
.+..+-.|++.++ ..|.
T Consensus 256 ~~~~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 256 EPDYYSGINAATLLMLAGH 274 (374)
T ss_pred CccccchHHHHHHHHHcCC
Confidence 4555556666544 4453
No 177
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=71.17 E-value=26 Score=36.99 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=78.1
Q ss_pred HHHHHHHCC---CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHH
Q 018965 87 FLKRCVFAG---NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCA 161 (348)
Q Consensus 87 ~~~kaA~~G---~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~ 161 (348)
+|+||-+.+ +..|++.+|.... ..+|++++.+.|+.+-+.. .....|.+|.++.. -.+.+.|+..|.
T Consensus 472 ~yEkawElsn~~sarA~r~~~~~~~-~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq-------lek~q~av~aF~ 543 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLALLIL-SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ-------LEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhccccc-cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH-------HhhhHHHHHHHH
Confidence 444444433 3457777777655 5789999999999988764 57788888888764 347889999999
Q ss_pred HHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965 162 RAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 162 kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
..... ++..|-.+|+..|.. -.+..+|+.-++.|..-
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~----~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIR----LKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHH----HhhhHHHHHHHHHHhhc
Confidence 98864 899999999998864 45777888888888643
No 178
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=70.15 E-value=1e+02 Score=31.21 Aligned_cols=93 Identities=14% Similarity=0.070 Sum_probs=68.5
Q ss_pred HHHHHHHHHH--HHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKR--CVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~k--aA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
.+.|...++. +..-+|+..+-..+.+++ ......+|.+.+++|..+- .+--.+++|..|..+. ++++|
T Consensus 322 ~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~-~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g-------~~~ea 393 (484)
T COG4783 322 YDEALKLLQPLIAAQPDNPYYLELAGDILL-EANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGG-------KPQEA 393 (484)
T ss_pred cchHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC-------ChHHH
Confidence 3444444444 234588888888888888 5677899999999998774 4667889999998763 34588
Q ss_pred HHHHHHHHhC--CCHHHHHHHHHHHhc
Q 018965 157 VALCARAASI--GHVDAVRELGHCLQD 181 (348)
Q Consensus 157 ~~~~~kAA~~--G~~~A~~~Lg~~y~~ 181 (348)
+..+...... .++.....|+..|..
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~ 420 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAE 420 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 8888877654 578888888888754
No 179
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.02 E-value=15 Score=34.05 Aligned_cols=62 Identities=16% Similarity=0.118 Sum_probs=49.8
Q ss_pred HHHHHHhhhhhhhccCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC
Q 018965 97 LEACYTLGMIRFYCLQNRSSGTSLMAKAAMK-----SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI 166 (348)
Q Consensus 97 ~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~-----G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~ 166 (348)
++|+|.||..++ ..+|++.|.+.|...+.. --|++++.||.+... ..+.++|-..|++....
T Consensus 178 ~nA~yWLGe~~y-~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~-------l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 178 PNAYYWLGESLY-AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR-------LGNTDEACATLQQVIKR 244 (262)
T ss_pred chhHHHHHHHHH-hcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHH
Confidence 689999999998 788999999999988864 246899999988742 23668888888877664
No 180
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=69.97 E-value=11 Score=23.26 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965 169 VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA 201 (348)
Q Consensus 169 ~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~ 201 (348)
..++.+||.+|.. ..+.++|..|+++|.+
T Consensus 2 a~~~~~la~~~~~----~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRA----QGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHH----CT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----hhhcchhhHHHHHHHH
Confidence 3567788888775 4588888888888864
No 181
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=69.37 E-value=13 Score=39.84 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=19.4
Q ss_pred HCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHH
Q 018965 93 FAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAA 125 (348)
Q Consensus 93 ~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA 125 (348)
+.||..|+|.||.+|. ...+..+|+.+|.+|-
T Consensus 963 esgd~AAcYhlaR~YE-n~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 963 ESGDKAACYHLARMYE-NDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hcccHHHHHHHHHHhh-hhHHHHHHHHHHHHHH
Confidence 4466666666666666 4455666666666553
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=69.35 E-value=91 Score=28.44 Aligned_cols=86 Identities=10% Similarity=-0.032 Sum_probs=60.0
Q ss_pred cHHHHHHHHHHHHHC--CCHH---HHHHhhhhhhhccCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHc-cC----
Q 018965 80 WSDSAHRFLKRCVFA--GNLE---ACYTLGMIRFYCLQNRSSGTSLMAKAAMK-----SHAPALYSLAVIQFN-GS---- 144 (348)
Q Consensus 80 ~~~~A~~~~~kaA~~--G~~~---A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~-----G~~~A~~~Lg~~y~~-G~---- 144 (348)
..++|+..|++..+. +.+. |++.||..|+ ..+|..+|+.+|++..+. .-+.|+|.+|..+.. +.
T Consensus 47 ~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy-~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~ 125 (243)
T PRK10866 47 NWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQ 125 (243)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhh
Confidence 377999999987764 3343 4589999988 688999999999999977 346799999987421 11
Q ss_pred ---CCCCCccCH---HHHHHHHHHHHhC
Q 018965 145 ---GGGKNEKDL---RAGVALCARAASI 166 (348)
Q Consensus 145 ---g~~~~~~d~---~~A~~~~~kAA~~ 166 (348)
.-....+|. .+|+.-|+.-.+.
T Consensus 126 ~~~~~~~~~rD~~~~~~A~~~~~~li~~ 153 (243)
T PRK10866 126 GFFGVDRSDRDPQHARAAFRDFSKLVRG 153 (243)
T ss_pred hccCCCccccCHHHHHHHHHHHHHHHHH
Confidence 000123444 4577778777664
No 183
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.82 E-value=39 Score=34.74 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=56.6
Q ss_pred HHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHH
Q 018965 101 YTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELG 176 (348)
Q Consensus 101 ~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg 176 (348)
|..|.-++ ..+|..+|+-.|+.|..+. |.+|.-.||+.... ..+...|+.-++++-+. +|.+|+..|+
T Consensus 289 f~eG~~lm-~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaE-------NE~E~~ai~AL~rcl~LdP~NleaLmaLA 360 (579)
T KOG1125|consen 289 FKEGCNLM-KNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAE-------NENEQNAISALRRCLELDPTNLEALMALA 360 (579)
T ss_pred HHHHHHHH-hcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhh-------ccchHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 44455554 4456888988999998885 88899999988853 23567788888998876 7899999999
Q ss_pred HHHhc
Q 018965 177 HCLQD 181 (348)
Q Consensus 177 ~~y~~ 181 (348)
..|.+
T Consensus 361 VSytN 365 (579)
T KOG1125|consen 361 VSYTN 365 (579)
T ss_pred HHHhh
Confidence 99976
No 184
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=67.66 E-value=30 Score=36.66 Aligned_cols=78 Identities=12% Similarity=0.001 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHccCCCCCCccCHHHHHHH
Q 018965 81 SDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSH-APALYSLAVIQFNGSGGGKNEKDLRAGVAL 159 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~-~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~ 159 (348)
.++|.+.|.+..+ -|...+..|...|. ..++.++|+++|++..+.|. |......+++-.-... -+.++|.++
T Consensus 376 ~~~A~~vf~~m~~-~d~~t~n~lI~~y~-~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~-----g~~~~a~~~ 448 (697)
T PLN03081 376 MEDARNVFDRMPR-KNLISWNALIAGYG-NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS-----GLSEQGWEI 448 (697)
T ss_pred HHHHHHHHHhCCC-CCeeeHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC-----CcHHHHHHH
Confidence 5666666665433 34445555555454 55677777777777776663 2333333333222211 245666666
Q ss_pred HHHHHh
Q 018965 160 CARAAS 165 (348)
Q Consensus 160 ~~kAA~ 165 (348)
|....+
T Consensus 449 f~~m~~ 454 (697)
T PLN03081 449 FQSMSE 454 (697)
T ss_pred HHHHHH
Confidence 666654
No 185
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=66.96 E-value=30 Score=30.84 Aligned_cols=70 Identities=20% Similarity=0.103 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHC---CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC------CHHHHHHHHHHHHccCCCCCCcc
Q 018965 81 SDSAHRFLKRCVFA---GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS------HAPALYSLAVIQFNGSGGGKNEK 151 (348)
Q Consensus 81 ~~~A~~~~~kaA~~---G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G------~~~A~~~Lg~~y~~G~g~~~~~~ 151 (348)
.+.|+.-|.++... .+++-++.||..|. ..|..+++.+|.++-+.- +++-...|+.+|.. .+
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~-------~~ 192 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT--KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK-------LK 192 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-------hc
Confidence 67888888876655 47899999999986 899999999999998653 56788888888863 33
Q ss_pred CHHHHHHH
Q 018965 152 DLRAGVAL 159 (348)
Q Consensus 152 d~~~A~~~ 159 (348)
+.++|.-|
T Consensus 193 ~~e~AYiw 200 (203)
T PF11207_consen 193 NYEQAYIW 200 (203)
T ss_pred chhhhhhh
Confidence 56666555
No 186
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=66.70 E-value=51 Score=32.44 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh--CCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965 131 PALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS--IGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE 203 (348)
Q Consensus 131 ~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~--~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G 203 (348)
....||+.+|+.- +++.+|+.+..++-+ .+|+.|+|+=|.+|.. --+++.|+..|++|.+..
T Consensus 258 ~~~lNlA~c~lKl-------~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~----~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 258 ACHLNLAACYLKL-------KEYKEAIESCNKVLELDPNNVKALYRRGQALLA----LGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHhhHHHHHHHhh-------hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh----hccHHHHHHHHHHHHHhC
Confidence 4667899999643 467899999999876 5799999999999876 348899999999997643
No 187
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=66.47 E-value=58 Score=32.05 Aligned_cols=75 Identities=16% Similarity=0.077 Sum_probs=60.1
Q ss_pred HHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHH
Q 018965 98 EACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVR 173 (348)
Q Consensus 98 ~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~ 173 (348)
.+..+|+.+|+ --.++.+|+.+-.++-+. +|..|+|+=|..|+.. | +++.|..-|++|.+. .|-.+..
T Consensus 258 ~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~-~------e~~~A~~df~ka~k~~P~Nka~~~ 329 (397)
T KOG0543|consen 258 ACHLNLAACYL-KLKEYKEAIESCNKVLELDPNNVKALYRRGQALLAL-G------EYDLARDDFQKALKLEPSNKAARA 329 (397)
T ss_pred HHhhHHHHHHH-hhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhh-c------cHHHHHHHHHHHHHhCCCcHHHHH
Confidence 35677787777 445678999999998764 6899999999999753 3 789999999999875 6788888
Q ss_pred HHHHHHh
Q 018965 174 ELGHCLQ 180 (348)
Q Consensus 174 ~Lg~~y~ 180 (348)
.|..+-.
T Consensus 330 el~~l~~ 336 (397)
T KOG0543|consen 330 ELIKLKQ 336 (397)
T ss_pred HHHHHHH
Confidence 8877764
No 188
>PLN03077 Protein ECB2; Provisional
Probab=66.29 E-value=89 Score=33.92 Aligned_cols=114 Identities=11% Similarity=0.097 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHCC---CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHH
Q 018965 81 SDSAHRFLKRCVFAG---NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGV 157 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G---~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~ 157 (348)
.+.+.+++....+.| |...+..|-.+|. ..++.++|.+.|++--+ -+......|...|.. .| ++++|+
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~-k~g~~~~A~~vf~~m~~-~d~~s~n~li~~~~~-~g------~~~~A~ 374 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYL-SLGSWGEAEKVFSRMET-KDAVSWTAMISGYEK-NG------LPDKAL 374 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHH-hcCCHHHHHHHHhhCCC-CCeeeHHHHHHHHHh-CC------CHHHHH
Confidence 445555555555555 3444444444444 44556666666665422 233344444444422 11 455566
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Q 018965 158 ALCARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREF 204 (348)
Q Consensus 158 ~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~ 204 (348)
+.|++--+.|...-...+..++. +.+-..+.++|..++..+...|.
T Consensus 375 ~lf~~M~~~g~~Pd~~t~~~ll~-a~~~~g~~~~a~~l~~~~~~~g~ 420 (857)
T PLN03077 375 ETYALMEQDNVSPDEITIASVLS-ACACLGDLDVGVKLHELAERKGL 420 (857)
T ss_pred HHHHHHHHhCCCCCceeHHHHHH-HHhccchHHHHHHHHHHHHHhCC
Confidence 66665544443222222222211 22223345555555555555443
No 189
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=65.23 E-value=6.8 Score=21.55 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=13.9
Q ss_pred HHHHhhhhhhhccCCHHHHHHHHHHHH
Q 018965 99 ACYTLGMIRFYCLQNRSSGTSLMAKAA 125 (348)
Q Consensus 99 A~~~Lg~~y~~~~~d~~~A~~~~~~AA 125 (348)
+.+.+|.+|. ...+.++|+.+|+++.
T Consensus 3 ~~~~~a~~~~-~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYL-KLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHH-HHhhHHHHHHHHHHHH
Confidence 3455555555 3455556666665554
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=62.22 E-value=1.4e+02 Score=28.14 Aligned_cols=81 Identities=17% Similarity=0.098 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHC--CCHHHHHHhhhhhh--hccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHH
Q 018965 81 SDSAHRFLKRCVFA--GNLEACYTLGMIRF--YCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLR 154 (348)
Q Consensus 81 ~~~A~~~~~kaA~~--G~~~A~~~Lg~~y~--~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~ 154 (348)
...|..-|++|... .|++..-.+|..+. ....+..++...|++|.... ++.|++.||.-++. +.|+.
T Consensus 172 ~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe-------~g~~~ 244 (287)
T COG4235 172 ASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFE-------QGDYA 244 (287)
T ss_pred hhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-------cccHH
Confidence 56788888888875 47887777777755 56778899999999999775 68899999999974 44889
Q ss_pred HHHHHHHHHHhCCC
Q 018965 155 AGVALCARAASIGH 168 (348)
Q Consensus 155 ~A~~~~~kAA~~G~ 168 (348)
+|+..+++=.+...
T Consensus 245 ~A~~~Wq~lL~~lp 258 (287)
T COG4235 245 EAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHHHhcCC
Confidence 99988887655543
No 191
>PLN03077 Protein ECB2; Provisional
Probab=61.93 E-value=1.1e+02 Score=33.18 Aligned_cols=106 Identities=6% Similarity=-0.010 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHccCCCCCCccCHHHHHHH
Q 018965 81 SDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHA-PALYSLAVIQFNGSGGGKNEKDLRAGVAL 159 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~-~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~ 159 (348)
.++|...|... .-|..++..|...|. ..++.++|+++|++--+.|.. +.....+++..-... .++++|.++
T Consensus 540 ~~~A~~~f~~~--~~d~~s~n~lI~~~~-~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~-----g~v~ea~~~ 611 (857)
T PLN03077 540 MNYAWNQFNSH--EKDVVSWNILLTGYV-AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS-----GMVTQGLEY 611 (857)
T ss_pred HHHHHHHHHhc--CCChhhHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc-----ChHHHHHHH
Confidence 56777777765 556666666655554 566777788888877777632 322222222222211 256777777
Q ss_pred HHHHH-hCCC---HHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Q 018965 160 CARAA-SIGH---VDAVRELGHCLQDGYGVRQNIEKGRRLLIE 198 (348)
Q Consensus 160 ~~kAA-~~G~---~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~ 198 (348)
|...- +.|. ......|..+|.. ..+.++|..++++
T Consensus 612 f~~M~~~~gi~P~~~~y~~lv~~l~r----~G~~~eA~~~~~~ 650 (857)
T PLN03077 612 FHSMEEKYSITPNLKHYACVVDLLGR----AGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHh----CCCHHHHHHHHHH
Confidence 77766 3342 2233333333322 3355556555554
No 192
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.14 E-value=31 Score=31.98 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHh----CCCHHH----HHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965 152 DLRAGVALCARAAS----IGHVDA----VRELGHCLQDGYGVRQNIEKGRRLLIEANA 201 (348)
Q Consensus 152 d~~~A~~~~~kAA~----~G~~~A----~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~ 201 (348)
-..++..+|+||.+ .|.++. .=.-|.+.+ ..++++|+.+|++|.+
T Consensus 86 klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~le-----nv~Pd~AlqlYqrala 138 (308)
T KOG1585|consen 86 KLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALE-----NVKPDDALQLYQRALA 138 (308)
T ss_pred HhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-----cCCHHHHHHHHHHHHH
Confidence 34566667777643 455442 122233444 3577778888877753
No 193
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=59.15 E-value=88 Score=32.94 Aligned_cols=113 Identities=13% Similarity=0.125 Sum_probs=82.2
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHhhhhhh------hccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH---ccCCCCCCc
Q 018965 80 WSDSAHRFLKRCVFAGNLEACYTLGMIRF------YCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQF---NGSGGGKNE 150 (348)
Q Consensus 80 ~~~~A~~~~~kaA~~G~~~A~~~Lg~~y~------~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~---~G~g~~~~~ 150 (348)
+.+++++.|++....=-.+-.|.+=..|+ ......+.|..+|++|-+.=-|...-.+=++|. .-.|
T Consensus 526 yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~G----- 600 (835)
T KOG2047|consen 526 YFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHG----- 600 (835)
T ss_pred HHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-----
Confidence 46888888888887777777777777776 456678999999999999555554444444442 2234
Q ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcc----CCCCCCHHHHHHHHHHHHhc
Q 018965 151 KDLRAGVALCARAASIGHVDAVRELGHCLQDG----YGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 151 ~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G----~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
=...|+..|++|...=...-++.+=.+|..- +||++ .+..|++|.+-
T Consensus 601 -Lar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~----TR~iYekaIe~ 651 (835)
T KOG2047|consen 601 -LARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPR----TREIYEKAIES 651 (835)
T ss_pred -HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcc----cHHHHHHHHHh
Confidence 2578999999999988888888888877543 67764 45677777765
No 194
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=55.82 E-value=1.2e+02 Score=31.94 Aligned_cols=15 Identities=20% Similarity=0.091 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHCC
Q 018965 81 SDSAHRFLKRCVFAG 95 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G 95 (348)
.++|+.+|++--+.|
T Consensus 306 ~~eA~~lf~~M~~~g 320 (697)
T PLN03081 306 SEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHHHHHcC
Confidence 455555555554444
No 195
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=55.67 E-value=36 Score=31.02 Aligned_cols=58 Identities=10% Similarity=0.088 Sum_probs=36.4
Q ss_pred HHHHHHHHHHC--CCHHHHHHhhhhhhhccCCHHHHHHHHHHHHh--CCCHHHHHHHHHHHHc
Q 018965 84 AHRFLKRCVFA--GNLEACYTLGMIRFYCLQNRSSGTSLMAKAAM--KSHAPALYSLAVIQFN 142 (348)
Q Consensus 84 A~~~~~kaA~~--G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~--~G~~~A~~~Lg~~y~~ 142 (348)
|..||++|... ++-..++.||.++. ..+|.-.|+.||-+|.- ...+.|.-+|..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~-~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLAS-YQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHH-HTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhc-cccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 46677777764 45566777777776 35677777777777653 3455567777776654
No 196
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=55.14 E-value=75 Score=30.10 Aligned_cols=78 Identities=12% Similarity=0.010 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHH--hhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHH
Q 018965 81 SDSAHRFLKRCVFAGNLEACYT--LGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAG 156 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G~~~A~~~--Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A 156 (348)
+++|+..|.+|.+..-..|-|. =+..|. .-..++.|++=.+.|.... +.+|+-.||+.|+.. | ++++|
T Consensus 97 Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~-g------k~~~A 168 (304)
T KOG0553|consen 97 YQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL-G------KYEEA 168 (304)
T ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc-C------cHHHH
Confidence 6667777777666653333322 122222 2234556666666666554 345666666666432 2 45666
Q ss_pred HHHHHHHHhC
Q 018965 157 VALCARAASI 166 (348)
Q Consensus 157 ~~~~~kAA~~ 166 (348)
++.|+||-+.
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 6666666554
No 197
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=54.81 E-value=1.1e+02 Score=30.91 Aligned_cols=114 Identities=10% Similarity=0.037 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHH-hhhh-------hh-h---ccCCHHHHHHHHHHHHhCCCHH---HHHHHHHHHHccCC
Q 018965 81 SDSAHRFLKRCVFAGNLEACYT-LGMI-------RF-Y---CLQNRSSGTSLMAKAAMKSHAP---ALYSLAVIQFNGSG 145 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G~~~A~~~-Lg~~-------y~-~---~~~d~~~A~~~~~~AA~~G~~~---A~~~Lg~~y~~G~g 145 (348)
.+.+++.+.++++.++..+-+. |.++ .+ + ...+...+.+.+...-.. +|. =.+.-|.++.
T Consensus 204 R~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-yP~s~lfl~~~gR~~~---- 278 (468)
T PF10300_consen 204 RELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-YPNSALFLFFEGRLER---- 278 (468)
T ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHH----
Confidence 7899999999999888765433 1111 11 3 366788888888887663 333 3344456654
Q ss_pred CCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccC--CCCCCHHHHHHHHHHHHhc
Q 018965 146 GGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQDGY--GVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 146 ~~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~G~--Gv~~d~~~A~~w~~~Aa~~ 202 (348)
...|+++|+++|++|.+.-+..-|...-..|+.|+ -...|.++|..+|.+-.+.
T Consensus 279 ---~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 279 ---LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred ---HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 45589999999999887555444444434444442 2467888888888877664
No 198
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=54.62 E-value=1.8e+02 Score=26.92 Aligned_cols=116 Identities=10% Similarity=0.012 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHH---CCCHHHHHHhhhhhh------hccC-CHHHHHHHHHHHHhC----CC-----H-------HHHH
Q 018965 81 SDSAHRFLKRCVF---AGNLEACYTLGMIRF------YCLQ-NRSSGTSLMAKAAMK----SH-----A-------PALY 134 (348)
Q Consensus 81 ~~~A~~~~~kaA~---~G~~~A~~~Lg~~y~------~~~~-d~~~A~~~~~~AA~~----G~-----~-------~A~~ 134 (348)
.+.|..+|.|+-. ..+|+-.-.|+.+++ ...+ +++.|+.|+++|-+- +. + .-..
T Consensus 9 ~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~ 88 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILR 88 (278)
T ss_pred HHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHH
Confidence 6778888888777 458887777877765 2456 899999999999876 31 1 1234
Q ss_pred HHHHHHHccCCCCCCccCHHHHHHHHHHHH-hCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965 135 SLAVIQFNGSGGGKNEKDLRAGVALCARAA-SIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE 203 (348)
Q Consensus 135 ~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA-~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G 203 (348)
.|+..|... + .+.+..+|....+.+- +.|+....+.|..-+..+ .-|.+.+..-+.+....-
T Consensus 89 ~La~~~l~~-~---~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~---~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 89 LLANAYLEW-D---TYESVEKALNALRLLESEYGNKPEVFLLKLEILLK---SFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHcC-C---ChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc---cCChhHHHHHHHHHHHhc
Confidence 556666543 3 4667888888888774 457878888887766665 445555555555555443
No 199
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=53.95 E-value=1.3e+02 Score=27.94 Aligned_cols=113 Identities=16% Similarity=0.238 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHCCC--HHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HccCCCCCCccCHHHHH
Q 018965 81 SDSAHRFLKRCVFAGN--LEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQ-FNGSGGGKNEKDLRAGV 157 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G~--~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y-~~G~g~~~~~~d~~~A~ 157 (348)
.+.|...|.+|-+.+. ..-+...|.|.+...+|.+.|.+.|+.+.+.=-....|.+..+- +...+ |...+.
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~------d~~~aR 90 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN------DINNAR 90 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-------HHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC------cHHHHH
Confidence 5788899999987654 45566666664456788888999999998763333334333322 22334 789999
Q ss_pred HHHHHHHhCCCHH----HHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965 158 ALCARAASIGHVD----AVRELGHCLQDGYGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 158 ~~~~kAA~~G~~~----A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
.+|+++...=..+ ..+.-=.-|+...| |.+.....++++.+.
T Consensus 91 ~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G---dl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 91 ALFERAISSLPKEKQSKKIWKKFIEFESKYG---DLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHH
Confidence 9999998752222 23333334455555 677777777777653
No 200
>PRK01343 zinc-binding protein; Provisional
Probab=53.15 E-value=9.4 Score=26.80 Aligned_cols=15 Identities=33% Similarity=0.837 Sum_probs=12.3
Q ss_pred ceeecChHHHHHhch
Q 018965 296 KVNYCSRACQAIDWK 310 (348)
Q Consensus 296 ~~~YCs~~CQ~~~W~ 310 (348)
...+||+.|+..|-.
T Consensus 23 ~rPFCS~RC~~iDLg 37 (57)
T PRK01343 23 AYPFCSERCRDIDLN 37 (57)
T ss_pred CCcccCHHHhhhhHH
Confidence 467999999998854
No 201
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=52.15 E-value=38 Score=30.86 Aligned_cols=58 Identities=22% Similarity=0.171 Sum_probs=37.3
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHH--hCCCHHHHHHHHHHHhc
Q 018965 117 GTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAA--SIGHVDAVRELGHCLQD 181 (348)
Q Consensus 117 A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA--~~G~~~A~~~Lg~~y~~ 181 (348)
|..||.+|..- ++...+++||+++.. .| |.-.|++||-+|- ....+.|.-+|..++..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~-~~------~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY-QG------DDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH-TT-------HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc-cc------chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56777777754 355667777777764 33 6677777777763 56777777777777766
No 202
>PF12855 Ecl1: Life-span regulatory factor; InterPro: IPR024368 The fungal proteins in this entry are involved in the regulation of chronological life-span [, ]. Overexpression of these proteins has been shown to extend the chronological life-span of wild-type strains. The mechanism by which this happens is not known, but microarray data suggests that they may function as pleiptropic stress regulators.
Probab=50.83 E-value=8.3 Score=25.46 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=15.2
Q ss_pred CCceeecChHHHHHhchh
Q 018965 294 CGKVNYCSRACQAIDWKT 311 (348)
Q Consensus 294 C~~~~YCs~~CQ~~~W~~ 311 (348)
--...|||.+|...|+..
T Consensus 20 ~~~~lYCSe~Cr~~D~~~ 37 (43)
T PF12855_consen 20 DDGSLYCSEECRLKDQEK 37 (43)
T ss_pred CCCccccCHHHHhHhhhc
Confidence 356789999999999975
No 203
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=50.25 E-value=1.1e+02 Score=28.97 Aligned_cols=87 Identities=17% Similarity=0.061 Sum_probs=55.1
Q ss_pred ccCCHHHHHHHHHHHHhCCCHHHHH--HHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCC
Q 018965 110 CLQNRSSGTSLMAKAAMKSHAPALY--SLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGV 185 (348)
Q Consensus 110 ~~~d~~~A~~~~~~AA~~G~~~A~~--~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv 185 (348)
-.+++.+|+..|.+|.+..-..|-| +=+..|.. .| .+..|++=.+.|... -+..|.-+||..|....-
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~-Lg------~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk- 164 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK-LG------EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK- 164 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hc------chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc-
Confidence 4577788888888888876443333 22333321 11 345677777777665 468889999998876533
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH
Q 018965 186 RQNIEKGRRLLIEANAREFFQS 207 (348)
Q Consensus 186 ~~d~~~A~~w~~~Aa~~G~~~A 207 (348)
+++|+..|++|.+..-.-.
T Consensus 165 ---~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 165 ---YEEAIEAYKKALELDPDNE 183 (304)
T ss_pred ---HHHHHHHHHhhhccCCCcH
Confidence 2567777888877654433
No 204
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=50.23 E-value=1.9e+02 Score=28.50 Aligned_cols=88 Identities=13% Similarity=0.009 Sum_probs=57.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCC
Q 018965 110 CLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQ 187 (348)
Q Consensus 110 ~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~ 187 (348)
.-.+.+.|.+|.+.+-+++.-+- |-..| +.- .+.|+.+=....++...+ .++...+.||.+|.. .+
T Consensus 275 ~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~--~~l---~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k----~~ 342 (400)
T COG3071 275 RLGDHDEAQEIIEDALKRQWDPR---LCRLI--PRL---RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK----NK 342 (400)
T ss_pred HcCChHHHHHHHHHHHHhccChh---HHHHH--hhc---CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH----hh
Confidence 45678889999988888764443 32233 211 333444444444444433 357889999999886 67
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 018965 188 NIEKGRRLLIEANAREFFQSVS 209 (348)
Q Consensus 188 d~~~A~~w~~~Aa~~G~~~A~~ 209 (348)
...+|..+|+.|...+...--.
T Consensus 343 ~w~kA~~~leaAl~~~~s~~~~ 364 (400)
T COG3071 343 LWGKASEALEAALKLRPSASDY 364 (400)
T ss_pred HHHHHHHHHHHHHhcCCChhhH
Confidence 8889999999888777654433
No 205
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=49.46 E-value=37 Score=30.49 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=12.0
Q ss_pred CCCCCChHHHHHHHHHhhc
Q 018965 19 LFDALPDDLLECVLSKLIS 37 (348)
Q Consensus 19 ~~~~l~~d~l~~il~~~a~ 37 (348)
.|+.|++.....|...++.
T Consensus 62 ~F~~l~~~~~~~i~~~i~~ 80 (214)
T PF09986_consen 62 DFEKLSPEQKEKIKENISS 80 (214)
T ss_pred ccccCCHHHHHHHHHHHHh
Confidence 4666777766666665554
No 206
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=49.31 E-value=2.7e+02 Score=28.10 Aligned_cols=116 Identities=12% Similarity=0.093 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHH--CCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCC------HHHHHHHHHHHHccCCCCCCccC
Q 018965 81 SDSAHRFLKRCVF--AGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSH------APALYSLAVIQFNGSGGGKNEKD 152 (348)
Q Consensus 81 ~~~A~~~~~kaA~--~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~------~~A~~~Lg~~y~~G~g~~~~~~d 152 (348)
.+.+.+.+...-. -..+-=.+.-|.++. ...|.++|+++|++|.+..+ .-..|.+|.+|. ...|
T Consensus 249 ~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~-~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~-------~~~~ 320 (468)
T PF10300_consen 249 LEEAEELLEEMLKRYPNSALFLFFEGRLER-LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHM-------FQHD 320 (468)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH-------HHch
Confidence 5666677766554 234444566666666 88999999999999886432 235566676664 3568
Q ss_pred HHHHHHHHHHHHhC-CCHHHHHHHH--HHH-hcc--CCCCCCHHHHHHHHHHHHhcCC
Q 018965 153 LRAGVALCARAASI-GHVDAVRELG--HCL-QDG--YGVRQNIEKGRRLLIEANAREF 204 (348)
Q Consensus 153 ~~~A~~~~~kAA~~-G~~~A~~~Lg--~~y-~~G--~Gv~~d~~~A~~w~~~Aa~~G~ 204 (348)
.++|.++|.+-.+. .-..|.|.+. .+| ..| .+.+...++|..+|+++-..-.
T Consensus 321 w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 321 WEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 99999999988875 4456666553 333 333 2344555888889888865443
No 207
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=47.83 E-value=61 Score=30.50 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=71.9
Q ss_pred cHHHHHHHHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcc-CCCCCCccCHHHHHH
Q 018965 80 WSDSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNG-SGGGKNEKDLRAGVA 158 (348)
Q Consensus 80 ~~~~A~~~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G-~g~~~~~~d~~~A~~ 158 (348)
..+.|++.+.+. ++.++...+-++|+ .-..++.|.+-++...+.+.-.-.++|+.-+..- .|+ ..+.+|+.
T Consensus 117 ~~~~AL~~l~~~---~~lE~~al~Vqi~L-~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~----e~~~~A~y 188 (290)
T PF04733_consen 117 DYEEALKLLHKG---GSLELLALAVQILL-KMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG----EKYQDAFY 188 (290)
T ss_dssp HHHHHHCCCTTT---TCHHHHHHHHHHHH-HTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT----TCCCHHHH
T ss_pred CHHHHHHHHHcc---CcccHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc----hhHHHHHH
Confidence 367788777765 78888777777776 3445677888888887777666666666654331 121 25788888
Q ss_pred HHHHHHhC-C-CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965 159 LCARAASI-G-HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 159 ~~~kAA~~-G-~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
.|+.-++. | .+..+.-++.++.. ..++++|...++.|.+.
T Consensus 189 ~f~El~~~~~~t~~~lng~A~~~l~----~~~~~eAe~~L~~al~~ 230 (290)
T PF04733_consen 189 IFEELSDKFGSTPKLLNGLAVCHLQ----LGHYEEAEELLEEALEK 230 (290)
T ss_dssp HHHHHHCCS--SHHHHHHHHHHHHH----CT-HHHHHHHHHHHCCC
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHh
Confidence 88888776 3 33344445554443 45888888888887654
No 208
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=46.80 E-value=1.6e+02 Score=27.67 Aligned_cols=94 Identities=17% Similarity=0.098 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHhhhhhh---hccCCHHHHHHHHHHHHhC-C-CHHHHHHHHHHHHccCCCCCCccCHHH
Q 018965 81 SDSAHRFLKRCVFAGNLEACYTLGMIRF---YCLQNRSSGTSLMAKAAMK-S-HAPALYSLAVIQFNGSGGGKNEKDLRA 155 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~---~~~~d~~~A~~~~~~AA~~-G-~~~A~~~Lg~~y~~G~g~~~~~~d~~~ 155 (348)
.+.|.+-++..-+..+-.-..+|+..+. ........|+..|+.-++. | .+..+..++.++.. .| ++++
T Consensus 147 ~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~------~~~e 219 (290)
T PF04733_consen 147 PDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LG------HYEE 219 (290)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-------HHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hC------CHHH
Confidence 7888889988877777666677776554 2236689999999998887 2 45566667777753 33 7899
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHhc
Q 018965 156 GVALCARAASI--GHVDAVRELGHCLQD 181 (348)
Q Consensus 156 A~~~~~kAA~~--G~~~A~~~Lg~~y~~ 181 (348)
|...+..|-+. ++++...++..+...
T Consensus 220 Ae~~L~~al~~~~~~~d~LaNliv~~~~ 247 (290)
T PF04733_consen 220 AEELLEEALEKDPNDPDTLANLIVCSLH 247 (290)
T ss_dssp HHHHHHHHCCC-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 99999998764 688999999887543
No 209
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=46.55 E-value=80 Score=23.47 Aligned_cols=32 Identities=19% Similarity=0.043 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC
Q 018965 82 DSAHRFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK 127 (348)
Q Consensus 82 ~~A~~~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~ 127 (348)
.+|..+.++|.+.. ..+++++|+.+|+.|.+.
T Consensus 4 ~~Ai~~a~~Ave~D--------------~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 4 RDAVQFARLAVQRD--------------QEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHH--------------HccCHHHHHHHHHHHHHH
Confidence 46677777776543 457888888888888764
No 210
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=45.07 E-value=20 Score=20.40 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=9.6
Q ss_pred HHHHhhhhhhhccCCHHHHHHHH
Q 018965 99 ACYTLGMIRFYCLQNRSSGTSLM 121 (348)
Q Consensus 99 A~~~Lg~~y~~~~~d~~~A~~~~ 121 (348)
+.+.||..+. ..+|.++|..++
T Consensus 3 a~~~la~~~~-~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALL-AQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHH
Confidence 3444444444 334444444444
No 211
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.64 E-value=90 Score=29.03 Aligned_cols=77 Identities=16% Similarity=0.028 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHH-CCCHHHHHHhhhhhh------hccCCHHHHHHHHHHHH----hCCCHHHH-H---HHHHHHHccCC
Q 018965 81 SDSAHRFLKRCVF-AGNLEACYTLGMIRF------YCLQNRSSGTSLMAKAA----MKSHAPAL-Y---SLAVIQFNGSG 145 (348)
Q Consensus 81 ~~~A~~~~~kaA~-~G~~~A~~~Lg~~y~------~~~~d~~~A~~~~~~AA----~~G~~~A~-~---~Lg~~y~~G~g 145 (348)
.++|-..+++|++ .-|-.+.|.-+..|. -.-+...++..+|+||. +.|.++.. - .-|.+.
T Consensus 47 feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~l----- 121 (308)
T KOG1585|consen 47 FEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKAL----- 121 (308)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-----
Confidence 6778888888883 344455555555554 12345678888898886 45766522 2 223333
Q ss_pred CCCCccCHHHHHHHHHHHHh
Q 018965 146 GGKNEKDLRAGVALCARAAS 165 (348)
Q Consensus 146 ~~~~~~d~~~A~~~~~kAA~ 165 (348)
...++++|+.+|+++++
T Consensus 122 ---env~Pd~AlqlYqrala 138 (308)
T KOG1585|consen 122 ---ENVKPDDALQLYQRALA 138 (308)
T ss_pred ---hcCCHHHHHHHHHHHHH
Confidence 34678999999999875
No 212
>PRK04841 transcriptional regulator MalT; Provisional
Probab=43.70 E-value=2.4e+02 Score=30.58 Aligned_cols=109 Identities=12% Similarity=0.035 Sum_probs=68.8
Q ss_pred cHHHHHHHHHHHHHC----CCH----HHHHHhhhhhhhccCCHHHHHHHHHHHHhC----CC------HHHHHHHHHHHH
Q 018965 80 WSDSAHRFLKRCVFA----GNL----EACYTLGMIRFYCLQNRSSGTSLMAKAAMK----SH------APALYSLAVIQF 141 (348)
Q Consensus 80 ~~~~A~~~~~kaA~~----G~~----~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G~------~~A~~~Lg~~y~ 141 (348)
..++|..+++++.+. |++ .+...+|.++. ...+...|..+++++.+. |. ......+|.++.
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 584 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF-AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW 584 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 367788888776542 332 34566677766 577899999998887653 21 122345566554
Q ss_pred ccCCCCCCccCHHHHHHHHHHHHhC----C---CHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 018965 142 NGSGGGKNEKDLRAGVALCARAASI----G---HVDAVRELGHCLQDGYGVRQNIEKGRRLLIEAN 200 (348)
Q Consensus 142 ~G~g~~~~~~d~~~A~~~~~kAA~~----G---~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa 200 (348)
. .| ++++|..++.++.+. + ...+...+|.++.. ..|..+|..++.++-
T Consensus 585 ~-~G------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 585 E-WA------RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA----RGDLDNARRYLNRLE 639 (903)
T ss_pred H-hc------CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 3 34 678888888887552 2 23444556665542 347888888888874
No 213
>PRK04841 transcriptional regulator MalT; Provisional
Probab=43.08 E-value=3.5e+02 Score=29.34 Aligned_cols=109 Identities=15% Similarity=0.134 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHC---CCH----HHHHHhhhhhhhccCCHHHHHHHHHHHHhC----CC----HHHHHHHHHHHHccCC
Q 018965 81 SDSAHRFLKRCVFA---GNL----EACYTLGMIRFYCLQNRSSGTSLMAKAAMK----SH----APALYSLAVIQFNGSG 145 (348)
Q Consensus 81 ~~~A~~~~~kaA~~---G~~----~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~----G~----~~A~~~Lg~~y~~G~g 145 (348)
.++|..+++++.+. ++. .+...+|.++. ...+...|..+++++.+. |+ ..+..++|.++.. .|
T Consensus 468 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~-~G 545 (903)
T PRK04841 468 PEEAERLAELALAELPLTWYYSRIVATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA-QG 545 (903)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH-CC
Confidence 68888898887652 222 24456666665 678999999999888642 33 2355677777643 34
Q ss_pred CCCCccCHHHHHHHHHHHHhC----CC------HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965 146 GGKNEKDLRAGVALCARAASI----GH------VDAVRELGHCLQDGYGVRQNIEKGRRLLIEANA 201 (348)
Q Consensus 146 ~~~~~~d~~~A~~~~~kAA~~----G~------~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~ 201 (348)
++..|..+++++.+. |. ......+|.++.. .-+.++|..+++++.+
T Consensus 546 ------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 546 ------FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE----WARLDEAEQCARKGLE 601 (903)
T ss_pred ------CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH----hcCHHHHHHHHHHhHH
Confidence 678888888876552 21 1223345554432 1266777777776644
No 214
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=41.84 E-value=52 Score=24.47 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=7.7
Q ss_pred CHHHHHHHHHHHHh
Q 018965 152 DLRAGVALCARAAS 165 (348)
Q Consensus 152 d~~~A~~~~~kAA~ 165 (348)
++++|+.+|..|.+
T Consensus 21 ny~eA~~lY~~ale 34 (75)
T cd02680 21 NAEEAIELYTEAVE 34 (75)
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555544
No 215
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.82 E-value=11 Score=24.62 Aligned_cols=31 Identities=39% Similarity=1.023 Sum_probs=18.9
Q ss_pred ccccCCCCCCCCccccccccCCCC-CceeecChHHHH
Q 018965 271 RLCSYSGCGRPETRVHEYRRCSVC-GKVNYCSRACQA 306 (348)
Q Consensus 271 ~~C~~~~C~~~~~~~~~l~~C~~C-~~~~YCs~~CQ~ 306 (348)
..|.. |+++.+-. ++-.+| -.|.|||..|.+
T Consensus 9 K~C~~--C~rpf~WR---KKW~~~Wd~VkYCS~rCR~ 40 (42)
T PF10013_consen 9 KICPV--CGRPFTWR---KKWARCWDEVKYCSDRCRR 40 (42)
T ss_pred CcCcc--cCCcchHH---HHHHHhchhhccHHHHhcc
Confidence 46764 77776632 222233 368999999864
No 216
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=40.80 E-value=1.1e+02 Score=25.74 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=26.1
Q ss_pred hCCCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCCCHHHHHHH
Q 018965 126 MKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVREL 175 (348)
Q Consensus 126 ~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G~~~A~~~L 175 (348)
++-+|+-.+.||..|.. .| |..++-+++++|.+.|-.+|..++
T Consensus 116 ~~~~p~~L~kia~Ay~k-lg------~~r~~~ell~~ACekG~kEAC~nI 158 (161)
T PF09205_consen 116 EEINPEFLVKIANAYKK-LG------NTREANELLKEACEKGLKEACRNI 158 (161)
T ss_dssp --S-HHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH-hc------chhhHHHHHHHHHHhchHHHHHHh
Confidence 34456666677777742 33 667777888888888887777654
No 217
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=39.07 E-value=14 Score=34.87 Aligned_cols=44 Identities=23% Similarity=0.601 Sum_probs=34.3
Q ss_pred ccccccCCCCCCCCccccccccCCCCC-----ceeecChHHHHHhchhhchhcCC
Q 018965 269 GLRLCSYSGCGRPETRVHEYRRCSVCG-----KVNYCSRACQAIDWKTRHKRECV 318 (348)
Q Consensus 269 ~~~~C~~~~C~~~~~~~~~l~~C~~C~-----~~~YCs~~CQ~~~W~~~Hk~~C~ 318 (348)
....|..-+|++... ..|..|. ..+.|+.+|-+.-|.. ||..=.
T Consensus 5 ~~~~c~~~~c~~~a~-----l~Cp~c~~~~i~~~~fc~q~cf~~~w~~-hK~~h~ 53 (369)
T KOG2738|consen 5 AKISCEGLQCGSEAS-----LQCPTCLKLGIKSAYFCAQECFKNSWLS-HKKLHR 53 (369)
T ss_pred hhceeeccccCChhh-----ccCchhhhcCCCcccccCchhhhcchhh-hhhhcc
Confidence 345676667887666 8899885 3578999999999998 887653
No 218
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=38.28 E-value=4.6e+02 Score=26.95 Aligned_cols=97 Identities=10% Similarity=-0.028 Sum_probs=57.1
Q ss_pred hhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCC--------CccCHHHHHHHHHHHHhCCCHHHHH
Q 018965 104 GMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGK--------NEKDLRAGVALCARAASIGHVDAVR 173 (348)
Q Consensus 104 g~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~--------~~~d~~~A~~~~~kAA~~G~~~A~~ 173 (348)
|.-++ ..+|+..|+..|.+|.... ++...-+.|.+|..=.-... .+.|+.-..-|++|++-+-...=.-
T Consensus 365 Gne~F-k~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~yd 443 (539)
T KOG0548|consen 365 GNEAF-KKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYD 443 (539)
T ss_pred HHHHH-hccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 44444 7889999999999999886 56677788888853211000 1122333333555544321111111
Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHh
Q 018965 174 ELGHCLQDGYGVRQNIEKGRRLLIEANA 201 (348)
Q Consensus 174 ~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~ 201 (348)
.--..|..|.-...+..++..||++..+
T Consensus 444 kAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 444 KALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 1124566666666777778888888766
No 219
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=38.21 E-value=34 Score=33.51 Aligned_cols=37 Identities=19% Similarity=0.403 Sum_probs=32.0
Q ss_pred CCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHhccC
Q 018965 20 FDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRVGL 60 (348)
Q Consensus 20 ~~~l~~d~l~~il~~~a~~~~s~~d~~~~~l~~k~~~~~~~ 60 (348)
-.+||+||+..|..++. +..|+.....+|+.|+.+..
T Consensus 4 Ws~Lp~dll~~i~~~l~----~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 4 WSTLPEELLHMIAGRLF----SNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred hhhCCHHHHHHHHhhCC----cHHHHHHHHhhhhhHHHhcc
Confidence 34699999999999885 55799999999999999864
No 220
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=35.96 E-value=3.6e+02 Score=24.97 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=29.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHccCCCCCCcc-----CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 018965 119 SLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEK-----DLRAGVALCARAASIGHVDAVRELGHCL 179 (348)
Q Consensus 119 ~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~-----d~~~A~~~~~kAA~~G~~~A~~~Lg~~y 179 (348)
++|+++-+.|+.+-...+=.++.+..+ ... +...|++.++.|.+.|+-+-.+.|-.++
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~---~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL 246 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEG---SSVVKDEESRQCALRLLVMALESGDWDLCFELVRFL 246 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCC---cchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 344444444444433333333333333 333 5566666666666666666666665544
No 221
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=35.85 E-value=15 Score=34.77 Aligned_cols=17 Identities=35% Similarity=0.915 Sum_probs=14.2
Q ss_pred ccCCCCCceeecChHHHH
Q 018965 289 RRCSVCGKVNYCSRACQA 306 (348)
Q Consensus 289 ~~C~~C~~~~YCs~~CQ~ 306 (348)
..|.||. ..|||-.|=+
T Consensus 20 YtCPRCn-~~YCsl~CYr 36 (383)
T KOG4317|consen 20 YTCPRCN-LLYCSLKCYR 36 (383)
T ss_pred ccCCCCC-ccceeeeeec
Confidence 8899998 6799988853
No 222
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=35.51 E-value=1.7e+02 Score=25.56 Aligned_cols=64 Identities=16% Similarity=0.080 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965 128 SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI-----GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 128 G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~-----G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
..+.+.|..|.-++. ..|+.+|+..|++.... =-..|++.||..|.. ..|...|+..|++-...
T Consensus 3 ~~~~~lY~~a~~~~~-------~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~----~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 3 DTAEALYQKALEALQ-------QGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK----QGDYEEAIAAYERFIKL 71 (203)
T ss_dssp --HHHHHHHHHHHHH-------CT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 356788999988864 23799999999999874 236799999998876 46899999888887654
No 223
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=35.36 E-value=1.9e+02 Score=28.98 Aligned_cols=104 Identities=14% Similarity=0.138 Sum_probs=78.6
Q ss_pred CCCHHHHHHhh-hhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHH-hCCCH
Q 018965 94 AGNLEACYTLG-MIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAA-SIGHV 169 (348)
Q Consensus 94 ~G~~~A~~~Lg-~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA-~~G~~ 169 (348)
..++.+.-.+| ...+..+.-.+||-++|+++-.+ |+..|-..++.+... +.-...++.+++++- ..-+.
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~-------Eg~~~D~i~LLe~~L~~~~D~ 471 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQV-------EGPTKDIIKLLEKHLIIFPDV 471 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHh-------hCccchHHHHHHHHHhhcccc
Confidence 46778888887 55555677789999999999866 688999999988853 333466888898875 56788
Q ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 018965 170 DAVRELGHCLQDGYGVRQNIEKGRRLLIEANAREFFQSVS 209 (348)
Q Consensus 170 ~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~ 209 (348)
.-...||.++.- ..-+.+|..+|..|-.+. |..+.
T Consensus 472 ~LH~~Lgd~~~A----~Ne~Q~am~~y~~ALr~d-P~~~~ 506 (564)
T KOG1174|consen 472 NLHNHLGDIMRA----QNEPQKAMEYYYKALRQD-PKSKR 506 (564)
T ss_pred HHHHHHHHHHHH----hhhHHHHHHHHHHHHhcC-ccchH
Confidence 888899998864 345788999998887654 44443
No 224
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=34.77 E-value=4.3e+02 Score=26.17 Aligned_cols=87 Identities=11% Similarity=0.017 Sum_probs=65.8
Q ss_pred hccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhccCCCC
Q 018965 109 YCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIG--HVDAVRELGHCLQDGYGVR 186 (348)
Q Consensus 109 ~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G--~~~A~~~Lg~~y~~G~Gv~ 186 (348)
...+..+.|+++|++-.+.. |+..+.|+.+|... + +..+|++++.++...- +...+...+.++.. .
T Consensus 180 ~~t~~~~~ai~lle~L~~~~-pev~~~LA~v~l~~-~------~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~----k 247 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERD-PEVAVLLARVYLLM-N------EEVEAIRLLNEALKENPQDSELLNLQAEFLLS----K 247 (395)
T ss_pred hhcccHHHHHHHHHHHHhcC-CcHHHHHHHHHHhc-C------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----c
Confidence 45567899999999987664 88899999999742 2 4679999999998743 55566666666665 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHH
Q 018965 187 QNIEKGRRLLIEANAREFFQS 207 (348)
Q Consensus 187 ~d~~~A~~w~~~Aa~~G~~~A 207 (348)
.+++.|+...++|.+.--..-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f 268 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEF 268 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhH
Confidence 577999999999987655443
No 225
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=34.49 E-value=3.3e+02 Score=29.04 Aligned_cols=111 Identities=18% Similarity=0.152 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHhhhhhh-hccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHHHH
Q 018965 81 SDSAHRFLKRCVFAGNLEACYTLGMIRF-YCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVAL 159 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~-~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~ 159 (348)
..+|...|.++--.+--.+.+.|..+.+ -...+.+.|-..+.+|-..=-..+..---.+.+.+.+. --.++..-
T Consensus 735 ~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~-----rkTks~DA 809 (913)
T KOG0495|consen 735 LVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ-----RKTKSIDA 809 (913)
T ss_pred hhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc-----cchHHHHH
Confidence 3455556665544444445555555544 34455666666666655443333333333444444441 22344444
Q ss_pred HHHHHhCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Q 018965 160 CARAASIGHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANAR 202 (348)
Q Consensus 160 ~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~ 202 (348)
++|- .+++.-...+|.++.. ++-+++|+.||.+|...
T Consensus 810 Lkkc--e~dphVllaia~lfw~----e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 810 LKKC--EHDPHVLLAIAKLFWS----EKKIEKAREWFERAVKK 846 (913)
T ss_pred HHhc--cCCchhHHHHHHHHHH----HHHHHHHHHHHHHHHcc
Confidence 4442 5677778888887765 67889999999999754
No 226
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=33.36 E-value=2.4e+02 Score=29.01 Aligned_cols=95 Identities=16% Similarity=0.112 Sum_probs=64.8
Q ss_pred HHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCCCHH------
Q 018965 99 ACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVD------ 170 (348)
Q Consensus 99 A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G~~~------ 170 (348)
+.|.|++.|. ..++.++|+++..+|.+.- .++-.+.-|.+|-. .| |+.+|.+++..|-...-.+
T Consensus 196 ~~~~lAqhyd-~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G------~~~~Aa~~~~~Ar~LD~~DRyiNsK 267 (517)
T PF12569_consen 196 TLYFLAQHYD-YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AG------DLKEAAEAMDEARELDLADRYINSK 267 (517)
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CC------CHHHHHHHHHHHHhCChhhHHHHHH
Confidence 5577777776 5778999999999999986 46777777888854 34 7899999999987743332
Q ss_pred -------------HHHHHHHHHhccCCCCCCHHH-HHHHHHHHHh
Q 018965 171 -------------AVRELGHCLQDGYGVRQNIEK-GRRLLIEANA 201 (348)
Q Consensus 171 -------------A~~~Lg~~y~~G~Gv~~d~~~-A~~w~~~Aa~ 201 (348)
|.-.++.+...+.+...|+.+ =..||.....
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a 312 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECA 312 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHH
Confidence 444455555555454455443 3456665543
No 227
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=33.26 E-value=28 Score=24.94 Aligned_cols=13 Identities=46% Similarity=1.022 Sum_probs=10.6
Q ss_pred eecChHHHHHhch
Q 018965 298 NYCSRACQAIDWK 310 (348)
Q Consensus 298 ~YCs~~CQ~~~W~ 310 (348)
..||+.|+..|-.
T Consensus 26 PFCS~RCk~IDLg 38 (62)
T PRK00418 26 PFCSKRCQLIDLG 38 (62)
T ss_pred CcccHHHHhhhHH
Confidence 4799999998854
No 228
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=29.38 E-value=3.4e+02 Score=22.76 Aligned_cols=90 Identities=12% Similarity=0.065 Sum_probs=54.4
Q ss_pred CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC---C--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhC----
Q 018965 96 NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK---S--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASI---- 166 (348)
Q Consensus 96 ~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~---G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~---- 166 (348)
.+..+|.-|.-.+ ..+++..|++.|+.--.. | -..|+..|+..|+. ..++.+|+.-+++-.+.
T Consensus 9 ~~~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-------~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 9 SPQELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-------QGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred CHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-------ccCHHHHHHHHHHHHHhCCCC
Confidence 3444455555444 466777777777665433 1 24678888877763 34677787777777664
Q ss_pred -CCHHHHHHHHHHHhcc-C-------CCCCCHHHHH
Q 018965 167 -GHVDAVRELGHCLQDG-Y-------GVRQNIEKGR 193 (348)
Q Consensus 167 -G~~~A~~~Lg~~y~~G-~-------Gv~~d~~~A~ 193 (348)
.-..|+|..|..+..- . ++.+|...+.
T Consensus 81 p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~ 116 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPAR 116 (142)
T ss_pred CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHH
Confidence 3455777777765432 2 5666655443
No 229
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=29.06 E-value=2.6e+02 Score=29.51 Aligned_cols=59 Identities=12% Similarity=0.109 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHH--CCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHH
Q 018965 81 SDSAHRFLKRCVF--AGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQ 140 (348)
Q Consensus 81 ~~~A~~~~~kaA~--~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y 140 (348)
.++|..+.+.+.. .++.-.+..+|.++. ..+++.+|++||+.|-..+ |.+-.+.|+.+-
T Consensus 57 ~~ea~~~vr~glr~d~~S~vCwHv~gl~~R-~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ 119 (700)
T KOG1156|consen 57 KEEAYELVRLGLRNDLKSHVCWHVLGLLQR-SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQ 119 (700)
T ss_pred hHHHHHHHHHHhccCcccchhHHHHHHHHh-hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 4555555555443 233344555666555 5566666666666655433 444555555443
No 230
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=28.43 E-value=3.1e+02 Score=25.38 Aligned_cols=63 Identities=14% Similarity=0.010 Sum_probs=47.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhccCCCCC-----CHHHHHHHHHHHHhcCCHHHHHhhhhhhhhhhh
Q 018965 158 ALCARAASIGHVDAVRELGHCLQDGYGVRQ-----NIEKGRRLLIEANAREFFQSVSKTRTRHQSYYF 220 (348)
Q Consensus 158 ~~~~kAA~~G~~~A~~~Lg~~y~~G~Gv~~-----d~~~A~~w~~~Aa~~G~~~A~~~~~~~~~~~~~ 220 (348)
++|++.-+.|+..-...+=.++.+..+... +...|.++++.|.+.|+-+--....+.+..+.+
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~ 251 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDP 251 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 578888888888877777777777667776 888899999999999987766655555544433
No 231
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=27.12 E-value=1.2e+02 Score=28.01 Aligned_cols=53 Identities=17% Similarity=0.087 Sum_probs=27.0
Q ss_pred cCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHH-ccCCCCCCcc-CHHHHHHHHHHHH
Q 018965 111 LQNRSSGTSLMAKAAM---KSHAPALYSLAVIQF-NGSGGGKNEK-DLRAGVALCARAA 164 (348)
Q Consensus 111 ~~d~~~A~~~~~~AA~---~G~~~A~~~Lg~~y~-~G~g~~~~~~-d~~~A~~~~~kAA 164 (348)
..|.+.|..+|.|+-. ..+|.-.-.|+.+++ .|.... ..+ +++.|..|+++|-
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~ 63 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAY 63 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHH
Confidence 4556666666666665 335555555554433 343211 123 5556666666553
No 232
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=26.92 E-value=93 Score=19.44 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHH
Q 018965 130 APALYSLAVIQFNGSGGGKNEKDLRAGVALCARA 163 (348)
Q Consensus 130 ~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kA 163 (348)
++++|++|..+.... .+.|..+++.+++..
T Consensus 1 ~qt~FnyAw~Lv~S~----~~~d~~~Gi~lLe~l 30 (35)
T PF14852_consen 1 PQTQFNYAWGLVKSN----NREDQQEGIALLEEL 30 (35)
T ss_dssp -HHHHHHHHHHHHSS----SHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHhcCC----CHHHHHHHHHHHHHH
Confidence 356677776665433 466777777777654
No 233
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=26.90 E-value=54 Score=32.31 Aligned_cols=52 Identities=13% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCHH-------HHHHHHHHHhcc-CCCCCCHHHHHHHHHHHHhcCC
Q 018965 153 LRAGVALCARAASIGHVD-------AVRELGHCLQDG-YGVRQNIEKGRRLLIEANAREF 204 (348)
Q Consensus 153 ~~~A~~~~~kAA~~G~~~-------A~~~Lg~~y~~G-~Gv~~d~~~A~~w~~~Aa~~G~ 204 (348)
..+|++|+++|-...+|+ |+..||.+|... .--++-+.+|...+++|...+|
T Consensus 334 ~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~ 393 (404)
T PF12753_consen 334 IKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATN 393 (404)
T ss_dssp HHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhccc
No 234
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=26.13 E-value=5.3e+02 Score=26.01 Aligned_cols=109 Identities=13% Similarity=0.059 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHCC--CHHHHHHhhhhhhhccCCHHHHHHHHHHHH--hCCCHHHHHHHH-HHHHccCCCCCCccCHHH
Q 018965 81 SDSAHRFLKRCVFAG--NLEACYTLGMIRFYCLQNRSSGTSLMAKAA--MKSHAPALYSLA-VIQFNGSGGGKNEKDLRA 155 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA--~~G~~~A~~~Lg-~~y~~G~g~~~~~~d~~~ 155 (348)
.++|.--|+.|...- ..+.+-.|=..|+ ..+...+|...-.-+. -+.++++..-+| ...+. .|.-.+|
T Consensus 350 ~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL-A~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~------dp~~rEK 422 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAPYRLEIYRGLFHSYL-AQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFP------DPRMREK 422 (564)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHhhcchhhhhhhcceeecc------CchhHHH
Confidence 778888888887765 4445544445566 3344445543322222 245788888887 33332 4456799
Q ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Q 018965 156 GVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEAN 200 (348)
Q Consensus 156 A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa 200 (348)
|..+++++-.+ |+..|-..++.+... +.-.+.++.+++++-
T Consensus 423 AKkf~ek~L~~~P~Y~~AV~~~AEL~~~----Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 423 AKKFAEKSLKINPIYTPAVNLIAELCQV----EGPTKDIIKLLEKHL 465 (564)
T ss_pred HHHHHHhhhccCCccHHHHHHHHHHHHh----hCccchHHHHHHHHH
Confidence 99999999876 899999999998763 334455666777663
No 235
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=25.90 E-value=1.1e+02 Score=21.82 Aligned_cols=18 Identities=17% Similarity=-0.021 Sum_probs=12.9
Q ss_pred ccCCHHHHHHHHHHHHhC
Q 018965 110 CLQNRSSGTSLMAKAAMK 127 (348)
Q Consensus 110 ~~~d~~~A~~~~~~AA~~ 127 (348)
..++..+|+.+|..|.+.
T Consensus 17 ~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HTTSHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 356778888888887653
No 236
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.41 E-value=1.8e+02 Score=27.96 Aligned_cols=74 Identities=11% Similarity=0.172 Sum_probs=46.6
Q ss_pred HHHHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHH
Q 018965 86 RFLKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS--HAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARA 163 (348)
Q Consensus 86 ~~~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G--~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kA 163 (348)
.+.++-+..|+++.+.++|-+.+ -+.+++.|++-|+.|-+-| ++--.|+++.+++. .+++..|+++...-
T Consensus 133 sLveQlp~en~Ad~~in~gClly-kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~-------~~qyasALk~iSEI 204 (459)
T KOG4340|consen 133 SLVEQLPSENEADGQINLGCLLY-KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS-------SRQYASALKHISEI 204 (459)
T ss_pred HHHHhccCCCccchhccchheee-ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh-------hhhHHHHHHHHHHH
Confidence 34444454566666777776655 5667777777777777654 45566777777653 33566677766666
Q ss_pred HhCC
Q 018965 164 ASIG 167 (348)
Q Consensus 164 A~~G 167 (348)
.+.|
T Consensus 205 ieRG 208 (459)
T KOG4340|consen 205 IERG 208 (459)
T ss_pred HHhh
Confidence 6554
No 237
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=25.13 E-value=1.9e+02 Score=27.94 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=46.7
Q ss_pred HHHHHHHccCCCCCCccCHHHHHHHHHHHHhC--CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH--hcCCHHHHHh
Q 018965 135 SLAVIQFNGSGGGKNEKDLRAGVALCARAASI--GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEAN--AREFFQSVSK 210 (348)
Q Consensus 135 ~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~--G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa--~~G~~~A~~~ 210 (348)
.-+.++..| +.++|..+|+-|... .++++...+|.+.+. .+|+.+|-.+|-+|- .-||.+|..+
T Consensus 122 ~A~~~~~~G--------k~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~----~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 122 AAGRSRKDG--------KLEKAMTLFEHALALAPTNPQILIEMGQFREM----HNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHHHHHhcc--------chHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh----hhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 335566655 348888888888765 588888888888876 378888888888773 5577777665
No 238
>PF13013 F-box-like_2: F-box-like domain
Probab=24.69 E-value=1e+02 Score=24.69 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=25.1
Q ss_pred CCCCCChHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHhc
Q 018965 19 LFDALPDDLLECVLSKLISSAPSPSDFINVLLTCKRLNRV 58 (348)
Q Consensus 19 ~~~~l~~d~l~~il~~~a~~~~s~~d~~~~~l~~k~~~~~ 58 (348)
.+.+||.||+..|+.... ..++.....+|+.++..
T Consensus 21 tl~DLP~ELl~~I~~~C~-----~~~l~~l~~~~~~~r~~ 55 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCN-----DPILLALSRTCRAYRSW 55 (109)
T ss_pred chhhChHHHHHHHHhhcC-----cHHHHHHHHHHHHHHHH
Confidence 367799999999998764 34666666666654433
No 239
>PF04181 RPAP2_Rtr1: Rtr1/RPAP2 family; InterPro: IPR007308 This entry represents a domain found in PAP2 (RNAP II associated polypeptide) protein and the yeast Rtr1 proteins. Its function is not known however it is thought to be a zinc finger.
Probab=24.63 E-value=80 Score=23.39 Aligned_cols=38 Identities=26% Similarity=0.656 Sum_probs=23.4
Q ss_pred cccccCCCCCCCCccc---cccccCCCCC---------ceeecChHHHHH
Q 018965 270 LRLCSYSGCGRPETRV---HEYRRCSVCG---------KVNYCSRACQAI 307 (348)
Q Consensus 270 ~~~C~~~~C~~~~~~~---~~l~~C~~C~---------~~~YCs~~CQ~~ 307 (348)
...|.++.|.++-... ..+....+=+ ...|||..|-+.
T Consensus 20 ~~~CGYplC~~~~~~~~~~~~y~i~~~~~~v~~~~~~~~~~fCS~~C~~~ 69 (79)
T PF04181_consen 20 NGLCGYPLCSNPPPKISSRQKYRIDLKANKVYDITERELSKFCSKDCYKA 69 (79)
T ss_pred CCCCCCccCCCCcccccCCCCeEEECCCCeecccccChhcCcCCHHHHHH
Confidence 3579998898754422 3344444322 238999999764
No 240
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=24.36 E-value=7e+02 Score=24.68 Aligned_cols=51 Identities=16% Similarity=0.074 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHhhhhhh-hccCCHHHHHHHHHHHHhC-CCHH
Q 018965 81 SDSAHRFLKRCVFAGNLEACYTLGMIRF-YCLQNRSSGTSLMAKAAMK-SHAP 131 (348)
Q Consensus 81 ~~~A~~~~~kaA~~G~~~A~~~Lg~~y~-~~~~d~~~A~~~~~~AA~~-G~~~ 131 (348)
..+|.+...++++.+.......|.-... ..-+|...+-.|+.+|++. |+..
T Consensus 100 ~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~ 152 (400)
T COG3071 100 FQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT 152 (400)
T ss_pred HHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch
Confidence 5688888888888887666655554444 5667888888888888888 4433
No 241
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=22.94 E-value=4.7e+02 Score=22.12 Aligned_cols=97 Identities=14% Similarity=0.091 Sum_probs=57.1
Q ss_pred hhhhhh-hccCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc
Q 018965 103 LGMIRF-YCLQNRSSGTSLMAKAAMKSHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAASIGHVDAVRELGHCLQD 181 (348)
Q Consensus 103 Lg~~y~-~~~~d~~~A~~~~~~AA~~G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~~G~~~A~~~Lg~~y~~ 181 (348)
+|.++- ..-+|...-++.|-+ .|-..-.+.++.-++.-.| -..-+++-..=+.+ -++-+++-.+.||..|..
T Consensus 60 IGkiFDis~C~NlKrVi~C~~~---~n~~se~vD~ALd~lv~~~---kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~k 132 (161)
T PF09205_consen 60 IGKIFDISKCGNLKRVIECYAK---RNKLSEYVDLALDILVKQG---KKDQLDKIYNELKK-NEEINPEFLVKIANAYKK 132 (161)
T ss_dssp HGGGS-GGG-S-THHHHHHHHH---TT---HHHHHHHHHHHHTT----HHHHHHHHHHH------S-HHHHHHHHHHHHH
T ss_pred HhhhcCchhhcchHHHHHHHHH---hcchHHHHHHHHHHHHHhc---cHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHH
Confidence 444443 455677777777754 3555666778877776555 23333333332222 456678888899999875
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCHHHHHh
Q 018965 182 GYGVRQNIEKGRRLLIEANAREFFQSVSK 210 (348)
Q Consensus 182 G~Gv~~d~~~A~~w~~~Aa~~G~~~A~~~ 210 (348)
--|..++-.++++|.+.|-.+|-.+
T Consensus 133 ----lg~~r~~~ell~~ACekG~kEAC~n 157 (161)
T PF09205_consen 133 ----LGNTREANELLKEACEKGLKEACRN 157 (161)
T ss_dssp ----TT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred ----hcchhhHHHHHHHHHHhchHHHHHH
Confidence 3388899999999999999999764
No 242
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=22.92 E-value=4.1e+02 Score=22.27 Aligned_cols=81 Identities=11% Similarity=0.065 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHC---C--CHHHHHHhhhhhhhccCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHccC------
Q 018965 81 SDSAHRFLKRCVFA---G--NLEACYTLGMIRFYCLQNRSSGTSLMAKAAMKS-----HAPALYSLAVIQFNGS------ 144 (348)
Q Consensus 81 ~~~A~~~~~kaA~~---G--~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G-----~~~A~~~Lg~~y~~G~------ 144 (348)
+++|.+.|+.--.. | -..|+..||..|+ ...++.+|+.-+++=.+.. -+.|+|..|+.+..-.
T Consensus 26 Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~ 104 (142)
T PF13512_consen 26 YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQS 104 (142)
T ss_pred HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhh
Confidence 66777777764332 1 2468888888888 7889999999999988774 3459999998886532
Q ss_pred --CCCCCccC---HHHHHHHHHHHHh
Q 018965 145 --GGGKNEKD---LRAGVALCARAAS 165 (348)
Q Consensus 145 --g~~~~~~d---~~~A~~~~~kAA~ 165 (348)
+ +.+| ..+|+.-|+.-.+
T Consensus 105 ~~~---~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 105 FFR---SDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred hcc---cccCcHHHHHHHHHHHHHHH
Confidence 4 4445 4566766666544
No 243
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.65 E-value=3.3e+02 Score=28.06 Aligned_cols=49 Identities=20% Similarity=0.117 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHhC---------CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcC
Q 018965 152 DLRAGVALCARAASI---------GHVDAVRELGHCLQDGYGVRQNIEKGRRLLIEANARE 203 (348)
Q Consensus 152 d~~~A~~~~~kAA~~---------G~~~A~~~Lg~~y~~G~Gv~~d~~~A~~w~~~Aa~~G 203 (348)
|...+..+|....++ =.|.|.|+||.+|.+=.| -+.++..|+.+|-+.+
T Consensus 464 ~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g---~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 464 DSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGG---GLKEARALLLKAREYA 521 (546)
T ss_pred CHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhccc---ChHHHHHHHHHHHhhc
Confidence 445555555555531 245677777777665544 4556777777776666
No 244
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.52 E-value=42 Score=24.12 Aligned_cols=14 Identities=36% Similarity=0.873 Sum_probs=11.1
Q ss_pred eeecChHHHHHhch
Q 018965 297 VNYCSRACQAIDWK 310 (348)
Q Consensus 297 ~~YCs~~CQ~~~W~ 310 (348)
...||+.||-.|-.
T Consensus 26 rPFCSkRCklIDLg 39 (65)
T COG3024 26 RPFCSKRCKLIDLG 39 (65)
T ss_pred CcchhHhhhhcchh
Confidence 45799999998854
No 245
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=21.89 E-value=58 Score=22.88 Aligned_cols=13 Identities=38% Similarity=0.933 Sum_probs=10.5
Q ss_pred eecChHHHHHhch
Q 018965 298 NYCSRACQAIDWK 310 (348)
Q Consensus 298 ~YCs~~CQ~~~W~ 310 (348)
..||+.|+..|-.
T Consensus 22 PFCS~RCk~iDLg 34 (57)
T PF03884_consen 22 PFCSERCKLIDLG 34 (57)
T ss_dssp SSSSHHHHHHHHS
T ss_pred CcccHhhcccCHH
Confidence 4799999998854
No 246
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=21.51 E-value=45 Score=33.56 Aligned_cols=24 Identities=29% Similarity=0.697 Sum_probs=20.5
Q ss_pred cccCCCCCCCCccccccccCCCCCc
Q 018965 272 LCSYSGCGRPETRVHEYRRCSVCGK 296 (348)
Q Consensus 272 ~C~~~~C~~~~~~~~~l~~C~~C~~ 296 (348)
.|.+|.|+.....+ ++..|.+|+.
T Consensus 170 qc~vC~~g~~~~~N-rmlqC~~C~~ 193 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGN-RMLQCDKCRQ 193 (464)
T ss_pred eeeeeecCCcCccc-eeeeeccccc
Confidence 49999999987777 8999999985
No 247
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=21.29 E-value=8.1e+02 Score=26.00 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=37.5
Q ss_pred HHHHHHCCCHHHHHHhhhhhhhccCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHccCCCCCCccCHHHHHHHHHHHHh
Q 018965 88 LKRCVFAGNLEACYTLGMIRFYCLQNRSSGTSLMAKAAMK--SHAPALYSLAVIQFNGSGGGKNEKDLRAGVALCARAAS 165 (348)
Q Consensus 88 ~~kaA~~G~~~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~--G~~~A~~~Lg~~y~~G~g~~~~~~d~~~A~~~~~kAA~ 165 (348)
+.+-.+.|+.-||-.|-+. .-.+.++|..+.+.+... ++.--++.||.+|. ..+++.+|++||+.|-.
T Consensus 34 L~k~~eHgeslAmkGL~L~---~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R-------~dK~Y~eaiKcy~nAl~ 103 (700)
T KOG1156|consen 34 LKKFPEHGESLAMKGLTLN---CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR-------SDKKYDEAIKCYRNALK 103 (700)
T ss_pred HHhCCccchhHHhccchhh---cccchHHHHHHHHHHhccCcccchhHHHHHHHHh-------hhhhHHHHHHHHHHHHh
Confidence 3344444444444332222 223455555555555442 13334556666654 34566666666666653
Q ss_pred --CCCHHHHHHHH
Q 018965 166 --IGHVDAVRELG 176 (348)
Q Consensus 166 --~G~~~A~~~Lg 176 (348)
..|..-.+.|+
T Consensus 104 ~~~dN~qilrDls 116 (700)
T KOG1156|consen 104 IEKDNLQILRDLS 116 (700)
T ss_pred cCCCcHHHHHHHH
Confidence 23444444443
No 248
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=21.16 E-value=2.2e+02 Score=24.55 Aligned_cols=30 Identities=10% Similarity=-0.099 Sum_probs=23.9
Q ss_pred HHHHHhhhhhhhccCCHHHHHHHHHHHHhCC
Q 018965 98 EACYTLGMIRFYCLQNRSSGTSLMAKAAMKS 128 (348)
Q Consensus 98 ~A~~~Lg~~y~~~~~d~~~A~~~~~~AA~~G 128 (348)
.++..+|..|. .-+|.+.|++.|.++-+.-
T Consensus 37 ~~~~~l~~~~~-~~Gd~~~A~k~y~~~~~~~ 66 (177)
T PF10602_consen 37 MALEDLADHYC-KIGDLEEALKAYSRARDYC 66 (177)
T ss_pred HHHHHHHHHHH-HhhhHHHHHHHHHHHhhhc
Confidence 46778888887 5669999999999977765
Done!