BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018966
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 372 bits (954), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/319 (57%), Positives = 238/319 (74%), Gaps = 9/319 (2%)
Query: 35 IGVCYGMKAKILPSKRDVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQ 94
+GVCYGM+ LP +V+ALY ++NI RMR+YDPN LEALRGSNIE++LG+PN +LQ
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 95 RIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDN----FARYLVPAMRNIQNAI 150
+ +N + A +WVQ NVR F ++V+F+YIAVGNE P + A++++PAMRNI +AI
Sbjct: 62 SL-TNPSNAKSWVQKNVRGFWSSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAI 120
Query: 151 NGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPY 210
AGL +QIKVST I+ + S+PPS G+F+ D R L+P+IRFL+ RSPLL N+YPY
Sbjct: 121 RSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLANIYPY 180
Query: 211 FAIAGN-RQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISE 269
F AGN R ISL YALF S VV DG Y++LFDA LDA+Y+ALE+ GGSL++V+SE
Sbjct: 181 FTYAGNPRDISLPYALFTSPSVVVWDGQRGYKNLFDATLDALYSALERASGGSLEVVVSE 240
Query: 270 SGWPTAGGDGALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKMGPEIE 329
SGWP+AG A DN RTY +NLIQHVKRG+PKRP R IETY+FAMFDEN K PE+E
Sbjct: 241 SGWPSAGAFAA--TFDNGRTYLSNLIQHVKRGTPKRPKRAIETYLFAMFDENKKQ-PEVE 297
Query: 330 RHWGLFAPNRQPKYQINFN 348
+H+GLF PN+ KY +NF+
Sbjct: 298 KHFGLFFPNKWQKYNLNFS 316
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 348 bits (893), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 178/314 (56%), Positives = 233/314 (74%), Gaps = 3/314 (0%)
Query: 35 IGVCYGMKAKILPSKRDVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQ 94
IGVCYGM LP +VV+LY NNI RMRLYDPN AL+ALR SNI+V+L +P ++Q
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 95 RIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFARYLVPAMRNIQNAINGAG 154
+ASN + A W++ NV + +V F+YIAVGNE PG + A+Y++PAMRNI NA++ AG
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWPSVSFRYIAVGNELIPGSDLAQYILPAMRNIYNALSSAG 120
Query: 155 LGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIA 214
L NQIKVST ++TG L S+PPS G+F + L P+++FL N +PLLVN+YPYF+
Sbjct: 121 LQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYPYFSYT 180
Query: 215 GN-RQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWP 273
GN QISL YALF + VV DG SY++LFDAI+DAV+AALE+ GG ++ +V+SESGWP
Sbjct: 181 GNPGQISLPYALFTASGVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVSESGWP 240
Query: 274 TAGGDGALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKMGPEIERHWG 333
+AGG GA + NA+TYN NLI+HV G+P+RPG+ IE YIF MF+EN K G IE+++G
Sbjct: 241 SAGG-GAEASTSNAQTYNQNLIRHVGGGTPRRPGKEIEAYIFEMFNENQKAG-GIEQNFG 298
Query: 334 LFAPNRQPKYQINF 347
LF PN+QP YQI+F
Sbjct: 299 LFYPNKQPVYQISF 312
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 324 bits (830), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 164/320 (51%), Positives = 224/320 (70%), Gaps = 13/320 (4%)
Query: 35 IGVCYGMKAKILPSKRDVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQ 94
IGVCYG A LPS +DV+ LYN NNI++MR+Y P+ AL+GSNIE++L +PN++L+
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 95 RIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPG---DNFARYLVPAMRNIQNAIN 151
+A N + AN WVQ+N+RN +VKFKYIAVGNE PG +AR++ PAM NI NA++
Sbjct: 63 ALA-NPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 152 GAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYF 211
AGL NQIKVST +G L ++PP F+++Y+ ++P+I FL + PLL N+YPYF
Sbjct: 122 SAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYF 181
Query: 212 A-IAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISES 270
I + L YALF Q+ Y++LFDA++D++Y A EK GG +++I++SES
Sbjct: 182 GHIDNTNAVPLSYALFNQQRR----NDTGYQNLFDALVDSMYFATEKLGGQNIEIIVSES 237
Query: 271 GWPTAGGDGALTNVDNARTYNNNLIQHVKR--GSPKRPGRPIETYIFAMFDENGKMGPEI 328
GWP+ G A + NARTY NLI HVKR G+PK+PG+ IETY+FAMFDEN K G
Sbjct: 238 GWPSEGHPAA--TLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEAS 295
Query: 329 ERHWGLFAPNRQPKYQINFN 348
E+H+GLF P+++PKYQ+NFN
Sbjct: 296 EKHFGLFNPDQRPKYQLNFN 315
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 322 bits (824), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 163/320 (50%), Positives = 223/320 (69%), Gaps = 13/320 (4%)
Query: 35 IGVCYGMKAKILPSKRDVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQ 94
IGVCYG A LPS +DV+ LYN NNI++MR+Y P+ AL+GSNIE++L +PN++L+
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 95 RIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPG---DNFARYLVPAMRNIQNAIN 151
+A N + AN WVQ+N+RN +VKFKYIAVGNE PG +AR++ PAM NI NA++
Sbjct: 63 ALA-NPSNANGWVQDNIRNHFPDVKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNALS 121
Query: 152 GAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYF 211
AGL NQIKVST +G L ++PP F+++Y+ ++P+I FL + PLL N+YPYF
Sbjct: 122 SAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYPYF 181
Query: 212 A-IAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISES 270
I + L YALF Q+ Y++LFDA++D++Y A EK GG +++I++S S
Sbjct: 182 GHIDNTNAVPLSYALFNQQRR----NDTGYQNLFDALVDSMYFATEKLGGQNIEIIVSAS 237
Query: 271 GWPTAGGDGALTNVDNARTYNNNLIQHVKR--GSPKRPGRPIETYIFAMFDENGKMGPEI 328
GWP+ G A + NARTY NLI HVKR G+PK+PG+ IETY+FAMFDEN K G
Sbjct: 238 GWPSEGHPAA--TLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEAS 295
Query: 329 ERHWGLFAPNRQPKYQINFN 348
E+H+GLF P+++PKYQ+NFN
Sbjct: 296 EKHFGLFNPDQRPKYQLNFN 315
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 276 bits (706), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 148/314 (47%), Positives = 202/314 (64%), Gaps = 9/314 (2%)
Query: 35 IGVCYGMKAKILPSKRDVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQ 94
IGVCYGM A LP+ VV+++ N I+ MRLY PN AL+A+ G+ I V++G PN+ L
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 95 RIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFARYLVPAMRNIQNAINGAG 154
+A++ A A +WV++N++ + V F+Y+ VGNE G R LVPAM+N+ A+ AG
Sbjct: 61 NLAASPAAAASWVKSNIQAYP-KVSFRYVCVGNEVAGGAT--RNLVPAMKNVHGALVAAG 117
Query: 155 LGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIA 214
LG IKV+T + L PPS GSF + + P+++FL +PL+ N+YPY A A
Sbjct: 118 LG-HIKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPYLAWA 176
Query: 215 GN-RQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWP 273
N + + YALF + TVV DG+ Y++LFD +DA Y A+ K GG S+ +V+SESGWP
Sbjct: 177 YNPSAMDMGYALFNASGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSESGWP 236
Query: 274 TAGGDGALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKMGPEIERHWG 333
+ GG A NAR YN +LI HV RG+P+ PG IETYIFAMF+EN K +E++WG
Sbjct: 237 SGGGTAATP--ANARFYNQHLINHVGRGTPRHPGA-IETYIFAMFNENQK-DSGVEQNWG 292
Query: 334 LFAPNRQPKYQINF 347
LF PN Q Y INF
Sbjct: 293 LFYPNMQHVYPINF 306
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 259 bits (663), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/315 (48%), Positives = 196/315 (62%), Gaps = 11/315 (3%)
Query: 35 IGVCYGMKAKILPSKRDVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQ 94
IGVCYG+ LPS+ DVV LY I MR+Y + +AL ALR S I ++L + N+ L
Sbjct: 1 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLA 60
Query: 95 RIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFARYLVPAMRNIQNAINGAG 154
IA++ + A +WVQNNVR + V KYIA GNE + G + ++PAMRN+ NA A
Sbjct: 61 NIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGAT--QSILPAMRNL-NAALSAA 117
Query: 155 LGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIA 214
IKVST I + SFPPS G FK Y + + R L +PLL N+YPYFA
Sbjct: 118 GLGAIKVSTSIRFDEVANSFPPSAGVFKNAY---MTDVARLLASTGAPLLANVYPYFAYR 174
Query: 215 GN-RQISLDYALFRSQQTVVS-DGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGW 272
N ISL+YA F+ TV + L+Y SLFDA++DAVYAALEK G ++ +V+SESGW
Sbjct: 175 DNPGSISLNYATFQPGTTVRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVVVSESGW 234
Query: 273 PTAGGDGALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKMGPEIERHW 332
P+AGG A + NARTYN LI HV G+PK+ +ETYIFAMF+EN K G ER +
Sbjct: 235 PSAGGFAA--SAGNARTYNQGLINHVGGGTPKKR-EALETYIFAMFNENQKTGDATERSF 291
Query: 333 GLFAPNRQPKYQINF 347
GLF P++ P Y I F
Sbjct: 292 GLFNPDKSPAYNIQF 306
>pdb|2YHE|A Chain A, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|B Chain B, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|C Chain C, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|D Chain D, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|E Chain E, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|2YHE|F Chain F, Structure Determination Of The Stereoselective Inverting
Sec-Alkylsulfatase Pisa1 From Pseudomonas Sp.
pdb|4AXH|A Chain A, Structure And Mechanism Of The First Inverting
Alkylsulfatase Specific For Secondary Alkylsulfatases
pdb|4AXH|B Chain B, Structure And Mechanism Of The First Inverting
Alkylsulfatase Specific For Secondary Alkylsulfatases
Length = 668
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 15/86 (17%)
Query: 253 AALEKTGGGSLDIVISESGWPTAGGDGALTNVDNARTY----NNNLIQHVKRGSPKRPGR 308
A+LEK G + D++I + WP GGD T + + R NN + + +G
Sbjct: 339 ASLEKYGDRT-DVLIQQHNWPVWGGDKVRTYLADQRDMYAFLNNRALNLMNKG------- 390
Query: 309 PIETYIFAMFDENGKMGPEIERHWGL 334
+ + E K+ E++R W L
Sbjct: 391 ---LTLHEIAAEVSKLPGELDRKWYL 413
>pdb|4AV7|A Chain A, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|B Chain B, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|C Chain C, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|D Chain D, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|E Chain E, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
pdb|4AV7|F Chain F, Structure Determination Of The Double Mutant S233y F250g
From The Sec-Alkyl Sulfatase Pisa1
Length = 668
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 15/86 (17%)
Query: 253 AALEKTGGGSLDIVISESGWPTAGGDGALTNVDNARTY----NNNLIQHVKRGSPKRPGR 308
A+LEK G + D++I + WP GGD T + + R NN + + +G
Sbjct: 339 ASLEKYGDRT-DVLIQQHNWPVWGGDKVRTYLADQRDMYAFLNNRALNLMNKG------- 390
Query: 309 PIETYIFAMFDENGKMGPEIERHWGL 334
+ + E K+ E++R W L
Sbjct: 391 ---LTLHEIAAEVSKLPGELDRKWYL 413
>pdb|3SE7|A Chain A, Ancient Vana
pdb|3SE7|B Chain B, Ancient Vana
pdb|3SE7|C Chain C, Ancient Vana
pdb|3SE7|D Chain D, Ancient Vana
pdb|3SE7|E Chain E, Ancient Vana
pdb|3SE7|F Chain F, Ancient Vana
Length = 346
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 13/67 (19%)
Query: 218 QISLDYALFRSQQ-------------TVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLD 264
QI+L + F+ Q TV +D S + RSL AVY AL G +D
Sbjct: 233 QITLSHGFFKIHQESTPESGSDNSAVTVPADISTTSRSLVQDTAKAVYRALGCRGLSRVD 292
Query: 265 IVISESG 271
+ ++E G
Sbjct: 293 LFLTEDG 299
>pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
Length = 792
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 16/109 (14%)
Query: 242 SLFDAILDAVYAALEKTG-----GGSLDIVIS---ESGWPTAGGDGALTN-VDNARTYNN 292
S+ D ++ +Y L++ G + + +S +G AG +G V R YNN
Sbjct: 222 SMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNN 281
Query: 293 NLIQHVKRGSPKRPG------RPIETYIFAMFDENGKMGPEIERHWGLF 335
++V +G KRPG P IF D G E +R LF
Sbjct: 282 T-ARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLF 329
>pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg.
pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg
Length = 676
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 16/109 (14%)
Query: 242 SLFDAILDAVYAALEKTG-----GGSLDIVIS---ESGWPTAGGDGALTN-VDNARTYNN 292
S+ D ++ +Y L++ G + + +S +G AG +G V R YNN
Sbjct: 149 SMKDDSIEGIYDTLKQCALISKSAGGIGVAVSCIRATGSYIAGTNGNSNGLVPMLRVYNN 208
Query: 293 NLIQHVKRGSPKRPG------RPIETYIFAMFDENGKMGPEIERHWGLF 335
++V +G KRPG P IF D G E +R LF
Sbjct: 209 T-ARYVDQGGNKRPGAFAIYLEPWHLDIFEFLDLKKNTGKEEQRARDLF 256
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 174 FPPSRGSFKQDYRPILDPL------IRFLN---DNRSPLLVNLYPYFAIAGNRQISLDYA 224
F PS+GS + I + L +R+ + DN+ VNLYP +A + + L +
Sbjct: 79 FGPSQGSCTNAVQSICNALEVPHIQLRWKHHPLDNKDTFYVNLYPDYASLSHAILDLVQS 138
Query: 225 LFRSQQTVVSDGSLSYRSLFDAIL 248
L TVV D S L + I+
Sbjct: 139 LKWRSATVVYDDSTGLIRLQELIM 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,502,469
Number of Sequences: 62578
Number of extensions: 445519
Number of successful extensions: 1097
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1060
Number of HSP's gapped (non-prelim): 16
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)