Query 018966
Match_columns 348
No_of_seqs 125 out of 1231
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:34:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 2.7E-81 5.9E-86 601.9 22.6 309 35-347 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 3.7E-49 8.1E-54 361.0 22.7 249 31-339 42-305 (305)
3 PF07745 Glyco_hydro_53: Glyco 99.1 1.8E-08 3.8E-13 98.1 20.0 245 49-346 26-330 (332)
4 PF03198 Glyco_hydro_72: Gluca 99.0 2.6E-08 5.6E-13 95.3 16.1 157 34-210 29-216 (314)
5 COG3867 Arabinogalactan endo-1 98.6 1.2E-06 2.7E-11 82.8 13.5 242 49-346 65-389 (403)
6 PRK10150 beta-D-glucuronidase; 98.4 7E-05 1.5E-09 78.8 24.7 256 34-345 294-585 (604)
7 PF00150 Cellulase: Cellulase 98.0 0.00052 1.1E-08 64.1 18.3 127 33-163 9-170 (281)
8 smart00633 Glyco_10 Glycosyl h 97.9 0.001 2.2E-08 62.5 18.6 212 72-345 20-251 (254)
9 PF11790 Glyco_hydro_cc: Glyco 97.4 0.0095 2.1E-07 55.6 16.7 164 118-341 64-232 (239)
10 PF02836 Glyco_hydro_2_C: Glyc 97.4 0.0055 1.2E-07 58.7 15.2 96 34-129 17-132 (298)
11 PF00232 Glyco_hydro_1: Glycos 96.4 0.012 2.7E-07 60.0 8.8 277 50-345 61-443 (455)
12 TIGR03356 BGL beta-galactosida 96.3 1.1 2.4E-05 45.5 21.8 79 50-130 57-163 (427)
13 PRK10340 ebgA cryptic beta-D-g 94.6 1.9 4.1E-05 48.6 17.9 95 34-131 336-452 (1021)
14 PRK09936 hypothetical protein; 91.9 5.8 0.00013 38.2 14.0 119 33-151 20-170 (296)
15 PF02449 Glyco_hydro_42: Beta- 89.9 1.2 2.6E-05 44.1 7.8 82 50-131 13-140 (374)
16 PF01229 Glyco_hydro_39: Glyco 81.2 68 0.0015 33.0 15.8 250 52-343 45-351 (486)
17 cd02875 GH18_chitobiase Chitob 74.4 13 0.00029 36.7 8.0 92 61-155 56-150 (358)
18 PRK13511 6-phospho-beta-galact 73.8 5.3 0.00012 41.0 5.1 46 50-95 57-121 (469)
19 PF03662 Glyco_hydro_79n: Glyc 73.6 27 0.00058 34.2 9.6 175 72-277 113-300 (319)
20 PRK09525 lacZ beta-D-galactosi 73.1 38 0.00083 38.4 12.0 95 34-131 352-465 (1027)
21 PLN02814 beta-glucosidase 64.1 11 0.00024 39.2 5.0 79 50-130 80-187 (504)
22 PLN02849 beta-glucosidase 63.5 11 0.00023 39.3 4.8 46 50-95 82-146 (503)
23 cd00598 GH18_chitinase-like Th 63.4 12 0.00027 33.1 4.7 83 72-155 53-142 (210)
24 PLN02998 beta-glucosidase 62.8 12 0.00027 38.8 5.1 46 50-95 85-149 (497)
25 PRK09593 arb 6-phospho-beta-gl 62.5 16 0.00035 37.7 5.9 46 50-95 76-141 (478)
26 smart00481 POLIIIAc DNA polyme 62.2 35 0.00075 24.7 6.2 45 46-90 14-63 (67)
27 PF00925 GTP_cyclohydro2: GTP 62.2 10 0.00023 33.4 3.9 37 53-89 132-168 (169)
28 PRK09589 celA 6-phospho-beta-g 61.0 23 0.00049 36.6 6.7 46 50-95 70-135 (476)
29 PF12876 Cellulase-like: Sugar 58.6 27 0.00058 27.0 5.3 47 117-165 8-64 (88)
30 PRK15014 6-phospho-beta-glucos 58.3 15 0.00032 38.0 4.7 45 50-94 72-136 (477)
31 COG4782 Uncharacterized protei 58.0 36 0.00078 33.9 7.1 58 239-299 124-185 (377)
32 PF02449 Glyco_hydro_42: Beta- 53.6 1.3E+02 0.0028 29.7 10.4 56 135-210 207-262 (374)
33 TIGR00505 ribA GTP cyclohydrol 52.9 22 0.00048 32.0 4.5 33 53-85 131-163 (191)
34 PRK00393 ribA GTP cyclohydrola 52.8 22 0.00048 32.2 4.5 36 53-88 134-169 (197)
35 cd02874 GH18_CFLE_spore_hydrol 52.3 75 0.0016 30.4 8.4 84 70-155 47-138 (313)
36 PRK09852 cryptic 6-phospho-bet 52.3 40 0.00086 34.8 6.7 46 50-95 74-139 (474)
37 COG3934 Endo-beta-mannanase [C 52.0 26 0.00057 36.2 5.1 182 106-345 125-312 (587)
38 PF04909 Amidohydro_2: Amidohy 51.7 35 0.00075 31.0 5.7 54 140-208 84-138 (273)
39 PF02055 Glyco_hydro_30: O-Gly 47.5 3.5E+02 0.0076 28.2 14.7 85 79-163 166-278 (496)
40 PF05990 DUF900: Alpha/beta hy 46.7 89 0.0019 28.8 7.6 40 257-299 44-87 (233)
41 KOG0626 Beta-glucosidase, lact 44.0 63 0.0014 33.7 6.6 79 259-344 404-498 (524)
42 PF06117 DUF957: Enterobacteri 43.0 58 0.0013 24.2 4.4 42 100-153 10-55 (65)
43 cd00641 GTP_cyclohydro2 GTP cy 42.4 39 0.00085 30.4 4.4 36 53-88 133-168 (193)
44 PF14587 Glyco_hydr_30_2: O-Gl 41.8 3.8E+02 0.0083 27.0 11.8 94 72-167 108-228 (384)
45 PF14488 DUF4434: Domain of un 41.6 1.9E+02 0.0041 25.4 8.5 21 71-91 68-88 (166)
46 PLN00196 alpha-amylase; Provis 40.3 99 0.0021 31.5 7.4 59 32-90 26-114 (428)
47 TIGR01579 MiaB-like-C MiaB-lik 38.3 2.6E+02 0.0056 27.9 10.0 73 122-213 250-330 (414)
48 PF01055 Glyco_hydro_31: Glyco 38.0 2.6E+02 0.0056 28.1 10.0 133 135-318 41-179 (441)
49 PRK09318 bifunctional 3,4-dihy 37.2 48 0.001 33.3 4.5 38 53-90 320-357 (387)
50 PRK14334 (dimethylallyl)adenos 37.1 4.5E+02 0.0097 26.6 11.6 59 134-211 269-327 (440)
51 PF14871 GHL6: Hypothetical gl 36.3 89 0.0019 26.4 5.4 43 49-91 2-67 (132)
52 PRK12485 bifunctional 3,4-dihy 36.0 43 0.00094 33.5 3.9 33 53-86 331-363 (369)
53 PRK14019 bifunctional 3,4-dihy 36.0 44 0.00096 33.4 4.0 35 53-88 328-362 (367)
54 PRK08815 GTP cyclohydrolase; P 35.8 52 0.0011 33.0 4.4 37 53-89 305-341 (375)
55 PRK09314 bifunctional 3,4-dihy 35.7 49 0.0011 32.7 4.1 33 53-85 301-334 (339)
56 PF00331 Glyco_hydro_10: Glyco 35.5 62 0.0013 31.4 4.9 218 71-345 62-313 (320)
57 COG1433 Uncharacterized conser 35.1 84 0.0018 26.3 4.9 40 50-89 55-94 (121)
58 cd06598 GH31_transferase_CtsZ 34.4 4.3E+02 0.0093 25.4 11.6 71 135-213 22-96 (317)
59 COG4213 XylF ABC-type xylose t 34.3 77 0.0017 31.0 5.1 74 71-163 175-249 (341)
60 PRK09311 bifunctional 3,4-dihy 33.9 58 0.0013 32.9 4.5 37 53-89 339-375 (402)
61 PLN02831 Bifunctional GTP cycl 33.8 57 0.0012 33.5 4.4 37 53-89 373-409 (450)
62 PLN03059 beta-galactosidase; P 33.8 7.2E+02 0.016 27.8 13.8 115 51-167 63-224 (840)
63 cd06545 GH18_3CO4_chitinase Th 33.6 88 0.0019 29.0 5.4 81 72-155 50-133 (253)
64 cd02872 GH18_chitolectin_chito 33.2 80 0.0017 30.8 5.3 78 75-153 62-150 (362)
65 PRK14332 (dimethylallyl)adenos 32.8 5.5E+02 0.012 26.2 12.8 130 120-273 261-398 (449)
66 PRK09319 bifunctional 3,4-dihy 32.7 61 0.0013 34.1 4.5 37 53-89 343-379 (555)
67 PRK14326 (dimethylallyl)adenos 32.4 5.9E+02 0.013 26.4 12.3 58 134-210 289-346 (502)
68 PRK14338 (dimethylallyl)adenos 31.6 5.8E+02 0.012 26.0 12.3 59 134-211 287-345 (459)
69 PRK13347 coproporphyrinogen II 31.1 1.1E+02 0.0025 31.1 6.2 95 50-156 152-282 (453)
70 TIGR01233 lacG 6-phospho-beta- 30.5 90 0.0019 32.1 5.3 46 50-95 56-120 (467)
71 PF14903 WG_beta_rep: WG conta 29.9 37 0.00079 20.9 1.5 16 332-347 1-16 (35)
72 cd04743 NPD_PKS 2-Nitropropane 28.9 4E+02 0.0088 26.1 9.2 58 32-90 55-112 (320)
73 COG0807 RibA GTP cyclohydrolas 28.0 1.1E+02 0.0023 27.9 4.7 39 53-91 133-171 (193)
74 PF13721 SecD-TM1: SecD export 28.0 2.1E+02 0.0046 22.9 6.1 60 7-66 4-65 (101)
75 PF13377 Peripla_BP_3: Peripla 27.7 2.5E+02 0.0054 23.0 6.8 121 54-196 2-134 (160)
76 cd01543 PBP1_XylR Ligand-bindi 27.6 4.5E+02 0.0098 23.5 9.9 127 51-196 99-238 (265)
77 PRK14339 (dimethylallyl)adenos 27.4 4.9E+02 0.011 26.2 9.9 58 135-211 263-320 (420)
78 PF00834 Ribul_P_3_epim: Ribul 27.3 4.7E+02 0.01 23.6 9.8 96 49-162 69-170 (201)
79 COG2730 BglC Endoglucanase [Ca 26.4 4E+02 0.0087 26.7 9.1 102 50-153 76-218 (407)
80 PRK14327 (dimethylallyl)adenos 26.3 7.2E+02 0.016 25.9 11.1 74 120-212 322-403 (509)
81 COG3250 LacZ Beta-galactosidas 25.4 5E+02 0.011 28.9 10.1 109 34-146 302-423 (808)
82 PRK07198 hypothetical protein; 22.8 76 0.0017 32.0 3.0 38 53-90 338-376 (418)
83 TIGR03632 bact_S11 30S ribosom 22.8 2E+02 0.0044 23.4 5.1 36 51-86 51-91 (108)
84 TIGR03822 AblA_like_2 lysine-2 22.8 4.3E+02 0.0093 25.6 8.2 21 71-91 187-207 (321)
85 COG3019 Predicted metal-bindin 22.6 3.6E+02 0.0077 23.4 6.6 25 45-70 35-59 (149)
86 KOG0078 GTP-binding protein SE 22.6 2E+02 0.0042 26.5 5.4 83 32-131 42-129 (207)
87 PRK14328 (dimethylallyl)adenos 22.0 5.4E+02 0.012 26.0 9.1 60 134-212 279-338 (439)
88 COG0621 MiaB 2-methylthioadeni 21.9 5.8E+02 0.012 26.2 9.2 62 132-212 275-336 (437)
89 cd07944 DRE_TIM_HOA_like 4-hyd 21.4 6.2E+02 0.013 23.8 8.8 87 53-150 88-180 (266)
90 cd04723 HisA_HisF Phosphoribos 21.0 4.5E+02 0.0097 24.1 7.7 69 48-132 36-113 (233)
91 PF01301 Glyco_hydro_35: Glyco 20.9 7.7E+02 0.017 23.9 12.2 111 50-165 27-181 (319)
92 smart00636 Glyco_18 Glycosyl h 20.7 4E+02 0.0087 25.4 7.6 79 74-153 57-142 (334)
93 TIGR03628 arch_S11P archaeal r 20.4 2.4E+02 0.0053 23.3 5.1 37 50-86 53-102 (114)
94 PF02811 PHP: PHP domain; Int 20.4 2.6E+02 0.0055 23.4 5.6 45 46-90 15-64 (175)
95 PRK13587 1-(5-phosphoribosyl)- 20.3 4.6E+02 0.01 24.1 7.6 70 47-132 31-111 (234)
96 PF13670 PepSY_2: Peptidase pr 20.1 1.8E+02 0.0039 22.0 4.0 21 48-69 30-50 (83)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=2.7e-81 Score=601.91 Aligned_cols=309 Identities=53% Similarity=0.940 Sum_probs=255.2
Q ss_pred eeEEecCCCCCCCCHHHHHHHHhcCCCCeEEeecCCHHHHHHHhcCCcEEEEecCCcchhHhhhhHHHHHHHHHhhcccc
Q 018966 35 IGVCYGMKAKILPSKRDVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNF 114 (348)
Q Consensus 35 ~Gi~Y~~~~~~~~s~~~v~~ll~~~~~~~VRlY~~d~~vl~A~~~~gikV~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~ 114 (348)
+|||||+.++|+|+++++++++|+++|++||||++|+++|+|++++||.|++||+|++++++++++..|..|++++|.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeccccCCCCCchhHHHHHHHHHHHHHHhCCCCCceEEEeeeecccccccCCCCCcccccCccchhhHHHH
Q 018966 115 ANNVKFKYIAVGNEAKPGDNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIR 194 (348)
Q Consensus 115 ~~~~~I~~I~VGNE~l~~~~~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa~~~~~~~~~~pPS~~~f~~~~~~~l~~~ld 194 (348)
+|.++|+.|+||||++...... .|+++|+++|++|++.||.++|||+|++.++++..+||||+|.|++++.++|+++++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~~-~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l~ 159 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDNA-YLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLLK 159 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGGG-GHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccce-eeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHHHH
Confidence 9999999999999999754333 899999999999999999988999999999999999999999999998889999999
Q ss_pred HHhhcCCCceecccccccccCC-CCCCccccccccCCceeccCCcchhcHHHHHHHHHHHHHHHhCCCCCcEEEeeeccC
Q 018966 195 FLNDNRSPLLVNLYPYFAIAGN-RQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWP 273 (348)
Q Consensus 195 fL~~~~d~~~vN~yPff~~~~~-~~i~~~~a~f~~~~~~~~d~~~~y~~~fda~~d~~~~a~~~~g~~~~~vvItETGWP 273 (348)
||.++++|+|+|+||||.+..+ .+++++||+|++.+... |++++|+|+||+|+|++++||+++|+++++|+|||||||
T Consensus 160 fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~-D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWP 238 (310)
T PF00332_consen 160 FLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVV-DGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWP 238 (310)
T ss_dssp HHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SE-ETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE---
T ss_pred HhhccCCCceeccchhhhccCCcccCCccccccccccccc-ccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEeccccc
Confidence 9999999999999999999988 89999999999977666 889999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEEeecCCCCCCCCCCCeeeeecCCCCceeeccc
Q 018966 274 TAGGDGALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKMGPEIERHWGLFAPNRQPKYQINF 347 (348)
Q Consensus 274 S~G~~~~vas~~na~~y~~~~~~~~~~gtp~~p~~~~~~~~F~~fDe~wK~~~~~E~~wGlf~~~~~~Ky~l~~ 347 (348)
|+|+.+ |+.+||+.|++++++++.+|||+||+.++++||||+|||+||+++++|+|||||++||+|||+++|
T Consensus 239 s~G~~~--a~~~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 239 SAGDPG--ATPENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp SSSSTT--CSHHHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred cCCCCC--CCcchhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 999977 999999999999999999999999999999999999999999987799999999999999999987
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-49 Score=360.98 Aligned_cols=249 Identities=20% Similarity=0.332 Sum_probs=201.1
Q ss_pred ccCeeeEEecCCCCCCCCH--HHHH---HHHhcCCCCeEEeecCC----HHHHHHHhcCCcEEEEecCCcchhHhhhhHH
Q 018966 31 ASAQIGVCYGMKAKILPSK--RDVV---ALYNQNNIRRMRLYDPN----IEALEALRGSNIEVMLGLPNENLQRIASNQA 101 (348)
Q Consensus 31 ~~~~~Gi~Y~~~~~~~~s~--~~v~---~ll~~~~~~~VRlY~~d----~~vl~A~~~~gikV~lGv~~~~~~~~a~~~~ 101 (348)
..++.+|||+|+++++.|| +|+. ++|++++ ..||+|++| .+|++|+...|+||++|||..+..+-+-+..
T Consensus 42 a~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t-~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~~~~t 120 (305)
T COG5309 42 ASGFLAFTLGPYNDDGTCKSADQVASDLELLASYT-HSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDAVEKT 120 (305)
T ss_pred cccccceeccccCCCCCCcCHHHHHhHHHHhccCC-ceEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhhHHHH
Confidence 4568899999999997776 5654 6777763 399999987 4788999999999999999976544332222
Q ss_pred HHHHHHHhhccccCCCceEEEEEeccccCCCCC-chhHHHHHHHHHHHHHHhCCCCCceEEEeeeecccccccCCCCCcc
Q 018966 102 EANTWVQNNVRNFANNVKFKYIAVGNEAKPGDN-FARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGS 180 (348)
Q Consensus 102 ~a~~wv~~~i~~~~~~~~I~~I~VGNE~l~~~~-~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa~~~~~~~~~~pPS~~~ 180 (348)
+..++.++..++.|++|+||||+|+|++ ++++|+++|.+||++|+.+|++ +||+|+++|.+|.+
T Consensus 121 -----il~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~-------- 185 (305)
T COG5309 121 -----ILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVIN-------- 185 (305)
T ss_pred -----HHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeC--------
Confidence 3567788888999999999999999986 8999999999999999999996 59999999998876
Q ss_pred cccCccchhhHHHHHHhhcCCCceecccccccccCCCCCCccccccccCCceeccCCcchhcHHHHHHHHHHHHHHHhCC
Q 018966 181 FKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGG 260 (348)
Q Consensus 181 f~~~~~~~l~~~ldfL~~~~d~~~vN~yPff~~~~~~~i~~~~a~f~~~~~~~~d~~~~y~~~fda~~d~~~~a~~~~g~ 260 (348)
+|. |+++.|++|+|.||||+.... ..+.+ .++-.|++.++.+ +|
T Consensus 186 -----np~-------l~~~SDfia~N~~aYwd~~~~----------------a~~~~----~f~~~q~e~vqsa---~g- 229 (305)
T COG5309 186 -----NPE-------LCQASDFIAANAHAYWDGQTV----------------ANAAG----TFLLEQLERVQSA---CG- 229 (305)
T ss_pred -----ChH-------Hhhhhhhhhcccchhccccch----------------hhhhh----HHHHHHHHHHHHh---cC-
Confidence 233 566778888999999998522 12222 3444556666553 24
Q ss_pred CCCcEEEeeeccCCCCC---CCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEEeecCCCCCCC--CCCCeeeee
Q 018966 261 GSLDIVISESGWPTAGG---DGALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKMGP--EIERHWGLF 335 (348)
Q Consensus 261 ~~~~vvItETGWPS~G~---~~~vas~~na~~y~~~~~~~~~~gtp~~p~~~~~~~~F~~fDe~wK~~~--~~E~~wGlf 335 (348)
.+|+++|+||||||.|. .+ +||++||+.|+++++|.++ +.+.++|+||+|||+||..+ ++|+|||++
T Consensus 230 ~~k~~~v~EtGWPS~G~~~G~a-~pS~anq~~~~~~i~~~~~-------~~G~d~fvfeAFdd~WK~~~~y~VEkywGv~ 301 (305)
T COG5309 230 TKKTVWVTETGWPSDGRTYGSA-VPSVANQKIAVQEILNALR-------SCGYDVFVFEAFDDDWKADGSYGVEKYWGVL 301 (305)
T ss_pred CCccEEEeeccCCCCCCccCCc-CCChhHHHHHHHHHHhhhh-------ccCccEEEeeeccccccCccccchhhceeee
Confidence 34999999999999997 24 6999999999999999886 34899999999999999854 599999999
Q ss_pred cCCC
Q 018966 336 APNR 339 (348)
Q Consensus 336 ~~~~ 339 (348)
+.+|
T Consensus 302 ~s~~ 305 (305)
T COG5309 302 SSDR 305 (305)
T ss_pred ccCC
Confidence 9875
No 3
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.06 E-value=1.8e-08 Score=98.14 Aligned_cols=245 Identities=15% Similarity=0.257 Sum_probs=127.2
Q ss_pred HHHHHHHHhcCCCCeEEeec---------CC-HHHH---HHHhcCCcEEEEecCCcch----------hHhhh-hHHHHH
Q 018966 49 KRDVVALYNQNNIRRMRLYD---------PN-IEAL---EALRGSNIEVMLGLPNENL----------QRIAS-NQAEAN 104 (348)
Q Consensus 49 ~~~v~~ll~~~~~~~VRlY~---------~d-~~vl---~A~~~~gikV~lGv~~~~~----------~~~a~-~~~~a~ 104 (348)
..++.++||..|++.||+=- +| ..++ +.+++.||+|+|-.--+|- ..+.. +.+++.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 46789999999999888752 12 3444 4456899999999876531 11221 222221
Q ss_pred ----HHHHhhccccC-CCceEEEEEeccccCCC-----C--CchhHHHHHHHHHHHHHHhCCCCCceEEEeeeecccccc
Q 018966 105 ----TWVQNNVRNFA-NNVKFKYIAVGNEAKPG-----D--NFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDE 172 (348)
Q Consensus 105 ----~wv~~~i~~~~-~~~~I~~I~VGNE~l~~-----~--~~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa~~~~~~~~ 172 (348)
+..++-+.... -+...+.|.||||.-.. + ...+.+...++.-.+++++.+- ++||-.-.. ....
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~~-~~~~- 181 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHLA-NGGD- 181 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEES--TTS-
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEC-CCCc-
Confidence 12211121111 24668899999997542 1 3567888888888888887553 355543211 1110
Q ss_pred cCCCCCcccccCccchhhHHHHHH---hhcCCCceecccccccccCCCCCCccccccccCCceeccCCcchhcHHHHHHH
Q 018966 173 SFPPSRGSFKQDYRPILDPLIRFL---NDNRSPLLVNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILD 249 (348)
Q Consensus 173 ~~pPS~~~f~~~~~~~l~~~ldfL---~~~~d~~~vN~yPff~~~~~~~i~~~~a~f~~~~~~~~d~~~~y~~~fda~~d 249 (348)
....+-..+.| .-.-|+++++.||||... + +.+...++
T Consensus 182 -------------~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~------l--------------------~~l~~~l~ 222 (332)
T PF07745_consen 182 -------------NDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGT------L--------------------EDLKNNLN 222 (332)
T ss_dssp -------------HHHHHHHHHHHHHTTGG-SEEEEEE-STTST-------H--------------------HHHHHHHH
T ss_pred -------------hHHHHHHHHHHHhcCCCcceEEEecCCCCcch------H--------------------HHHHHHHH
Confidence 01111222222 224589999999999852 0 11222333
Q ss_pred HHHHHHHHhCCCCCcEEEeeeccCCCCC-----C----------CCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCceEEE
Q 018966 250 AVYAALEKTGGGSLDIVISESGWPTAGG-----D----------GALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYI 314 (348)
Q Consensus 250 ~~~~a~~~~g~~~~~vvItETGWPS~G~-----~----------~~vas~~na~~y~~~~~~~~~~gtp~~p~~~~~~~~ 314 (348)
.+. ++. +|+|+|.|||||..-. . +.-+|++.|+.|++++++.+.. .|. +.+.-+||
T Consensus 223 ~l~---~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~-~p~--~~g~GvfY 293 (332)
T PF07745_consen 223 DLA---SRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKN-VPN--GGGLGVFY 293 (332)
T ss_dssp HHH---HHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHT-S----TTEEEEEE
T ss_pred HHH---HHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHH-hcc--CCeEEEEe
Confidence 332 233 5799999999999821 0 1136899999999999999862 221 23566777
Q ss_pred EEe-ecCCC-----CCCCCCCCeeeeecCCCCceeecc
Q 018966 315 FAM-FDENG-----KMGPEIERHWGLFAPNRQPKYQIN 346 (348)
Q Consensus 315 F~~-fDe~w-----K~~~~~E~~wGlf~~~~~~Ky~l~ 346 (348)
-|. .-..+ ..|...|.. +||+.+|++--+|+
T Consensus 294 WeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~sl~ 330 (332)
T PF07745_consen 294 WEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPSLD 330 (332)
T ss_dssp E-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GGGG
T ss_pred eccccccCCcccccCCCCCcccc-ccCCCCCCCchHhh
Confidence 662 22211 122234444 89999998876654
No 4
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.96 E-value=2.6e-08 Score=95.27 Aligned_cols=157 Identities=23% Similarity=0.297 Sum_probs=88.3
Q ss_pred eeeEEecCCCCCCC--------CH---HHHHHHHhcCCCCeEEeecCC-----HHHHHHHhcCCcEEEEecCCcchhHhh
Q 018966 34 QIGVCYGMKAKILP--------SK---RDVVALYNQNNIRRMRLYDPN-----IEALEALRGSNIEVMLGLPNENLQRIA 97 (348)
Q Consensus 34 ~~Gi~Y~~~~~~~~--------s~---~~v~~ll~~~~~~~VRlY~~d-----~~vl~A~~~~gikV~lGv~~~~~~~~a 97 (348)
..||.|.|-++..+ .+ .+.+.+||+.|++.||+|+.| ..-+.++++.||-|++.+.... .++.
T Consensus 29 ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~-~sI~ 107 (314)
T PF03198_consen 29 IKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPN-GSIN 107 (314)
T ss_dssp EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTT-BS--
T ss_pred EeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCC-cccc
Confidence 46999999876211 11 346689999999999999887 3688999999999999998752 2222
Q ss_pred hh-H------HHHHHHHHhhccccCCCceEEEEEeccccCCCC---CchhHHHHHHHHHHHHHHhCCCCCceEEEeeeec
Q 018966 98 SN-Q------AEANTWVQNNVRNFANNVKFKYIAVGNEAKPGD---NFARYLVPAMRNIQNAINGAGLGNQIKVSTVIET 167 (348)
Q Consensus 98 ~~-~------~~a~~wv~~~i~~~~~~~~I~~I~VGNE~l~~~---~~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa~~~ 167 (348)
+. + ...++ ..+-|..+..-+++-+..+|||++... ..++.+-.+++++|+-+++.++.. |||+-+-.
T Consensus 108 r~~P~~sw~~~l~~~-~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~-IPVGYsaa- 184 (314)
T PF03198_consen 108 RSDPAPSWNTDLLDR-YFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRS-IPVGYSAA- 184 (314)
T ss_dssp TTS------HHHHHH-HHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE--
T ss_pred CCCCcCCCCHHHHHH-HHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCC-CceeEEcc-
Confidence 21 1 11111 223344443447899999999999864 268889999999999999999975 99996532
Q ss_pred ccccccCCCCCcccccCccchhhHHHHHHh-----hcCCCceeccccc
Q 018966 168 GALDESFPPSRGSFKQDYRPILDPLIRFLN-----DNRSPLLVNLYPY 210 (348)
Q Consensus 168 ~~~~~~~pPS~~~f~~~~~~~l~~~ldfL~-----~~~d~~~vN~yPf 210 (348)
|. ...-.++.+||. +..|.+++|.|-+
T Consensus 185 D~----------------~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~W 216 (314)
T PF03198_consen 185 DD----------------AEIRQDLANYLNCGDDDERIDFFGLNSYEW 216 (314)
T ss_dssp ------------------TTTHHHHHHHTTBTT-----S-EEEEE---
T ss_pred CC----------------hhHHHHHHHHhcCCCcccccceeeecccee
Confidence 11 112235666665 3558889999864
No 5
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.56 E-value=1.2e-06 Score=82.81 Aligned_cols=242 Identities=19% Similarity=0.352 Sum_probs=134.1
Q ss_pred HHHHHHHHhcCCCCeEEee------cCC-----------HHHH---HHHhcCCcEEEEecCCcch---hHhhhhHHHHHH
Q 018966 49 KRDVVALYNQNNIRRMRLY------DPN-----------IEAL---EALRGSNIEVMLGLPNENL---QRIASNQAEANT 105 (348)
Q Consensus 49 ~~~v~~ll~~~~~~~VRlY------~~d-----------~~vl---~A~~~~gikV~lGv~~~~~---~~~a~~~~~a~~ 105 (348)
..|..++||.+|++.||+- +.| ..++ +.+++.||||++-.--+|- +.- +.+ -.+
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPak-Q~k--Pka 141 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAK-QKK--PKA 141 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhh-cCC--cHH
Confidence 4567799999999988874 222 2233 3456799999998765531 110 000 011
Q ss_pred H-------HHhhcccc--------C-CCceEEEEEeccccCCC-----CC--chhHHHHHHHHHHHHHHhCCCCCceEEE
Q 018966 106 W-------VQNNVRNF--------A-NNVKFKYIAVGNEAKPG-----DN--FARYLVPAMRNIQNAINGAGLGNQIKVS 162 (348)
Q Consensus 106 w-------v~~~i~~~--------~-~~~~I~~I~VGNE~l~~-----~~--~~~~Ll~~i~~v~~aL~~~gl~~~v~Vt 162 (348)
| ++++|-.| . -...+.-|-||||.-.. |+ .-+.+...++.--++++... .+|+|-
T Consensus 142 W~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~ 219 (403)
T COG3867 142 WENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVA 219 (403)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEE
Confidence 2 12222111 1 13557789999998541 22 34455555666666666543 347766
Q ss_pred eeeecccccccCCCCCcccccCccchhhHHHHHHhh---cCCCceecccccccccCCCCCCccccccccCCceeccCCcc
Q 018966 163 TVIETGALDESFPPSRGSFKQDYRPILDPLIRFLND---NRSPLLVNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLS 239 (348)
Q Consensus 163 Ta~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfL~~---~~d~~~vN~yPff~~~~~~~i~~~~a~f~~~~~~~~d~~~~ 239 (348)
.- +.+.-.+ +.|+ -+.|-|.+ .-|+++.--||||...=+
T Consensus 220 lH-----la~g~~n--~~y~--------~~fd~ltk~nvdfDVig~SyYpyWhgtl~----------------------- 261 (403)
T COG3867 220 LH-----LAEGENN--SLYR--------WIFDELTKRNVDFDVIGSSYYPYWHGTLN----------------------- 261 (403)
T ss_pred EE-----ecCCCCC--chhh--------HHHHHHHHcCCCceEEeeeccccccCcHH-----------------------
Confidence 42 2332222 2222 11222222 237889999999997311
Q ss_pred hhcHHHHHHHHHHHHHHHhCCCCCcEEEeeecc--------------CCCCC-CCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 018966 240 YRSLFDAILDAVYAALEKTGGGSLDIVISESGW--------------PTAGG-DGALTNVDNARTYNNNLIQHVKRGSPK 304 (348)
Q Consensus 240 y~~~fda~~d~~~~a~~~~g~~~~~vvItETGW--------------PS~G~-~~~vas~~na~~y~~~~~~~~~~gtp~ 304 (348)
| +...++.+. . --+|.|+|.||+. |+.+. .++-.++..|.+|.+++++.+. ..|.
T Consensus 262 --n-L~~nl~dia----~--rY~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~-nvp~ 331 (403)
T COG3867 262 --N-LTTNLNDIA----S--RYHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVK-NVPK 331 (403)
T ss_pred --H-HHhHHHHHH----H--HhcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHH-hCCC
Confidence 1 111111111 1 1257999999999 66664 1223678899999999999985 2222
Q ss_pred CCCCCceEEEEE------------------ee-cCCCCCCCCCCCeeeeecCCCCceeecc
Q 018966 305 RPGRPIETYIFA------------------MF-DENGKMGPEIERHWGLFAPNRQPKYQIN 346 (348)
Q Consensus 305 ~p~~~~~~~~F~------------------~f-De~wK~~~~~E~~wGlf~~~~~~Ky~l~ 346 (348)
. ++.-+|+.| .| .|+|+.|..++.. -||+.+|.|-.+|+
T Consensus 332 ~--~GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdNq-aLfdf~G~~LPSl~ 389 (403)
T COG3867 332 S--NGLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDNQ-ALFDFNGHPLPSLN 389 (403)
T ss_pred C--CceEEEEecccceeccCCCccccchhhccCcccccCCCccchh-hhhhccCCcCcchh
Confidence 1 244455544 22 2556654334333 68888888877664
No 6
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.44 E-value=7e-05 Score=78.83 Aligned_cols=256 Identities=16% Similarity=0.113 Sum_probs=139.8
Q ss_pred eeeEEecCCCCC---CCCHHH---HHHHHhcCCCCeEEeec--CCHHHHHHHhcCCcEEEEecCCc--------------
Q 018966 34 QIGVCYGMKAKI---LPSKRD---VVALYNQNNIRRMRLYD--PNIEALEALRGSNIEVMLGLPNE-------------- 91 (348)
Q Consensus 34 ~~Gi~Y~~~~~~---~~s~~~---v~~ll~~~~~~~VRlY~--~d~~vl~A~~~~gikV~lGv~~~-------------- 91 (348)
..|+|+-..... ..++++ .++++|..|++.||+-. .++..+.+|-+.||-|+.=++.-
T Consensus 294 lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~ 373 (604)
T PRK10150 294 FKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGN 373 (604)
T ss_pred EEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccc
Confidence 457877433211 233333 45789999999999943 35789999999999998544211
Q ss_pred -chhHhh------hhHHHHHHHHHhhccccCCCceEEEEEeccccCCCCCchhHHHHHHHHHHHHHHhCCCCCceEEEee
Q 018966 92 -NLQRIA------SNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFARYLVPAMRNIQNAINGAGLGNQIKVSTV 164 (348)
Q Consensus 92 -~~~~~a------~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNE~l~~~~~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa 164 (348)
+...+. ...+...+-+++.|.++.....|..=++|||.-...+... ..++.+.+.+++.. ..=+|+.+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~~~~~---~~~~~l~~~~k~~D--ptR~vt~~ 448 (604)
T PRK10150 374 KPKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASREQGAR---EYFAPLAELTRKLD--PTRPVTCV 448 (604)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCccchhHH---HHHHHHHHHHHhhC--CCCceEEE
Confidence 000110 0111122224555666544456889999999753222222 33334444444332 23467765
Q ss_pred eecccccccCCCCCcccccCccchhhHHHHHHhhcCCCceecccccccccCCCCCCccccccccCCceeccCCcchhcHH
Q 018966 165 IETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRSLF 244 (348)
Q Consensus 165 ~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfL~~~~d~~~vN~yPff~~~~~~~i~~~~a~f~~~~~~~~d~~~~y~~~f 244 (348)
..+. . +|.. .. +....|+++.|.|+=|-.... +.+ .....+
T Consensus 449 ~~~~---~--~~~~--------~~-------~~~~~Dv~~~N~Y~~wy~~~~-----~~~--------------~~~~~~ 489 (604)
T PRK10150 449 NVMF---A--TPDT--------DT-------VSDLVDVLCLNRYYGWYVDSG-----DLE--------------TAEKVL 489 (604)
T ss_pred eccc---C--Cccc--------cc-------ccCcccEEEEcccceecCCCC-----CHH--------------HHHHHH
Confidence 4211 0 0100 01 122346667998763321100 000 001112
Q ss_pred HHHHHHHHHHHHHhCCCCCcEEEeeeccCCCCC-----CCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEEeec
Q 018966 245 DAILDAVYAALEKTGGGSLDIVISESGWPTAGG-----DGALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFD 319 (348)
Q Consensus 245 da~~d~~~~a~~~~g~~~~~vvItETGWPS~G~-----~~~vas~~na~~y~~~~~~~~~~gtp~~p~~~~~~~~F~~fD 319 (348)
+..+.... +. + +||++++|.|+.+.-+ +. .-|.+.|..|++...+.+. .+|. -.-.|+..+||
T Consensus 490 ~~~~~~~~----~~-~-~kP~~isEyg~~~~~~~h~~~~~-~~~ee~q~~~~~~~~~~~~----~~p~-~~G~~iW~~~D 557 (604)
T PRK10150 490 EKELLAWQ----EK-L-HKPIIITEYGADTLAGLHSMYDD-MWSEEYQCAFLDMYHRVFD----RVPA-VVGEQVWNFAD 557 (604)
T ss_pred HHHHHHHH----Hh-c-CCCEEEEccCCccccccccCCCC-CCCHHHHHHHHHHHHHHHh----cCCc-eEEEEEEeeec
Confidence 22222111 11 2 7899999999876322 22 2578899999998877765 2333 45588899999
Q ss_pred CCCCCCC--CCCCeeeeecCCCCceeec
Q 018966 320 ENGKMGP--EIERHWGLFAPNRQPKYQI 345 (348)
Q Consensus 320 e~wK~~~--~~E~~wGlf~~~~~~Ky~l 345 (348)
-.+..+. .-..+.||++.||+||-..
T Consensus 558 ~~~~~g~~~~~g~~~Gl~~~dr~~k~~~ 585 (604)
T PRK10150 558 FATSQGILRVGGNKKGIFTRDRQPKSAA 585 (604)
T ss_pred cCCCCCCcccCCCcceeEcCCCCChHHH
Confidence 6554321 1235889999999999654
No 7
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.02 E-value=0.00052 Score=64.09 Aligned_cols=127 Identities=14% Similarity=0.070 Sum_probs=80.8
Q ss_pred CeeeEEecCCCCCCCCHHHHHHHHhcCCCCeEEeecC-------------C-------HHHHHHHhcCCcEEEEecCCcc
Q 018966 33 AQIGVCYGMKAKILPSKRDVVALYNQNNIRRMRLYDP-------------N-------IEALEALRGSNIEVMLGLPNEN 92 (348)
Q Consensus 33 ~~~Gi~Y~~~~~~~~s~~~v~~ll~~~~~~~VRlY~~-------------d-------~~vl~A~~~~gikV~lGv~~~~ 92 (348)
...|+|-. +.+.. ..+++++.+++.|++.||+.-. + ..+|++|++.||+|++.+....
T Consensus 9 ~~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~ 86 (281)
T PF00150_consen 9 NWRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAP 86 (281)
T ss_dssp EEEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEEST
T ss_pred Eeeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCc
Confidence 35577766 22111 5678889999999999999721 1 2578888999999999887630
Q ss_pred ----hhHhhhhHHHHHHHHHh---hcc-ccCCCceEEEEEeccccCCCCC-------chhHHHHHHHHHHHHHHhCCCCC
Q 018966 93 ----LQRIASNQAEANTWVQN---NVR-NFANNVKFKYIAVGNEAKPGDN-------FARYLVPAMRNIQNAINGAGLGN 157 (348)
Q Consensus 93 ----~~~~a~~~~~a~~wv~~---~i~-~~~~~~~I~~I~VGNE~l~~~~-------~~~~Ll~~i~~v~~aL~~~gl~~ 157 (348)
............+|+.+ .+. +|.....|.++-+.||+..... ....+.+.++.+-+++++.+-.
T Consensus 87 ~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~- 165 (281)
T PF00150_consen 87 GWANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPN- 165 (281)
T ss_dssp TCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSS-
T ss_pred cccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCc-
Confidence 00001111112222222 233 3324456789999999987532 2477889999999999999865
Q ss_pred ceEEEe
Q 018966 158 QIKVST 163 (348)
Q Consensus 158 ~v~VtT 163 (348)
.+|..
T Consensus 166 -~~i~~ 170 (281)
T PF00150_consen 166 -HLIIV 170 (281)
T ss_dssp -SEEEE
T ss_pred -ceeec
Confidence 34444
No 8
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.94 E-value=0.001 Score=62.48 Aligned_cols=212 Identities=15% Similarity=0.085 Sum_probs=114.5
Q ss_pred HHHHHHhcCCcEEEE--ecCCcchhHhhhh------HHHHHHHHHhhccccCCCceEEEEEeccccCCCCC------chh
Q 018966 72 EALEALRGSNIEVML--GLPNENLQRIASN------QAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDN------FAR 137 (348)
Q Consensus 72 ~vl~A~~~~gikV~l--Gv~~~~~~~~a~~------~~~a~~wv~~~i~~~~~~~~I~~I~VGNE~l~~~~------~~~ 137 (348)
.+++.|++.||+|-- -+|....+.+..+ .++..+++.+.+.+| ...|...-|.||++..+. ...
T Consensus 20 ~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry--~g~i~~wdV~NE~~~~~~~~~~~~~w~ 97 (254)
T smart00633 20 AIVNFAKENGIKVRGHTLVWHSQTPDWVFNLSKETLLARLENHIKTVVGRY--KGKIYAWDVVNEALHDNGSGLRRSVWY 97 (254)
T ss_pred HHHHHHHHCCCEEEEEEEeecccCCHhhhcCCHHHHHHHHHHHHHHHHHHh--CCcceEEEEeeecccCCCcccccchHH
Confidence 466777888888632 3565544443321 344556666666676 456999999999986431 111
Q ss_pred HHH--HHHHHHHHHHHhCCCCCceEEEeeeecccccccCCCCCcccccCccchhhHHHHHHhhcCC---Cceeccccccc
Q 018966 138 YLV--PAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRS---PLLVNLYPYFA 212 (348)
Q Consensus 138 ~Ll--~~i~~v~~aL~~~gl~~~v~VtTa~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfL~~~~d---~~~vN~yPff~ 212 (348)
..+ ++|+..-+..++.. .++++-.-+ .++.. ++. - ...+..+++.|.+.+- -+++..|-+..
T Consensus 98 ~~~G~~~i~~af~~ar~~~--P~a~l~~Nd-y~~~~---~~~---k----~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~ 164 (254)
T smart00633 98 QILGEDYIEKAFRYAREAD--PDAKLFYND-YNTEE---PNA---K----RQAIYELVKKLKAKGVPIDGIGLQSHLSLG 164 (254)
T ss_pred HhcChHHHHHHHHHHHHhC--CCCEEEEec-cCCcC---ccH---H----HHHHHHHHHHHHHCCCccceeeeeeeecCC
Confidence 122 34444444444443 235555432 11211 110 0 1223455555554333 23332221100
Q ss_pred ccCCCCCCccccccccCCceeccCCcchhcHHHHHHHHHHHHHHHhCCCCCcEEEeeeccCCCCCCCCCCCHHHHHHHHH
Q 018966 213 IAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWPTAGGDGALTNVDNARTYNN 292 (348)
Q Consensus 213 ~~~~~~i~~~~a~f~~~~~~~~d~~~~y~~~fda~~d~~~~a~~~~g~~~~~vvItETGWPS~G~~~~vas~~na~~y~~ 292 (348)
. .+ .+.+...|++++..++||+|||.+-|.. ++.+.|+.+++
T Consensus 165 -----------------------~----~~-----~~~~~~~l~~~~~~g~pi~iTE~dv~~~------~~~~~qA~~~~ 206 (254)
T smart00633 165 -----------------------S----PN-----IAEIRAALDRFASLGLEIQITELDISGY------PNPQAQAADYE 206 (254)
T ss_pred -----------------------C----CC-----HHHHHHHHHHHHHcCCceEEEEeecCCC------CcHHHHHHHHH
Confidence 0 01 1223333444444578999999999864 34478889999
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEeecC-CCCCCCCCCCeeeeecCCCCceeec
Q 018966 293 NLIQHVKRGSPKRPGRPIETYIFAMFDE-NGKMGPEIERHWGLFAPNRQPKYQI 345 (348)
Q Consensus 293 ~~~~~~~~gtp~~p~~~~~~~~F~~fDe-~wK~~~~~E~~wGlf~~~~~~Ky~l 345 (348)
.++..+.+ .| . ...+++..+.|. .|.+ +.+-|||+.|++||..+
T Consensus 207 ~~l~~~~~-~p---~-v~gi~~Wg~~d~~~W~~----~~~~~L~d~~~~~kpa~ 251 (254)
T smart00633 207 EVFKACLA-HP---A-VTGVTVWGVTDKYSWLD----GGAPLLFDANYQPKPAY 251 (254)
T ss_pred HHHHHHHc-CC---C-eeEEEEeCCccCCcccC----CCCceeECCCCCCChhh
Confidence 99998862 12 1 223444445543 4544 24779999999999764
No 9
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.44 E-value=0.0095 Score=55.59 Aligned_cols=164 Identities=13% Similarity=0.134 Sum_probs=94.1
Q ss_pred ceEEEEEeccccCCCCC---chhHHHHHHHHHHHHHHhCCCCCceEEEeeeecccccccCCCCCcccccCccchhhHHHH
Q 018966 118 VKFKYIAVGNEAKPGDN---FARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIR 194 (348)
Q Consensus 118 ~~I~~I~VGNE~l~~~~---~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa~~~~~~~~~~pPS~~~f~~~~~~~l~~~ld 194 (348)
..++.|..=||+=...+ ++++.+...++..+.|+.. .+++..+-.-. .+.-+|.. ..-|.+.++
T Consensus 64 ~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~~----~~~l~sPa~~~--~~~~~~~g-------~~Wl~~F~~ 130 (239)
T PF11790_consen 64 PGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRSP----GVKLGSPAVAF--TNGGTPGG-------LDWLSQFLS 130 (239)
T ss_pred cCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhcC----CcEEECCeecc--cCCCCCCc-------cHHHHHHHH
Confidence 46788999999976432 6778877777777777743 37777664310 00000100 123333333
Q ss_pred HHh--hcCCCceecccccccccCCCCCCccccccccCCceeccCCcchhcHHHHHHHHHHHHHHHhCCCCCcEEEeeecc
Q 018966 195 FLN--DNRSPLLVNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGW 272 (348)
Q Consensus 195 fL~--~~~d~~~vN~yPff~~~~~~~i~~~~a~f~~~~~~~~d~~~~y~~~fda~~d~~~~a~~~~g~~~~~vvItETGW 272 (348)
-.. ...|++.+|.| ... + .-|...++.++ ++.| |||+|||.|+
T Consensus 131 ~~~~~~~~D~iavH~Y---~~~----~----------------------~~~~~~i~~~~---~~~~---kPIWITEf~~ 175 (239)
T PF11790_consen 131 ACARGCRVDFIAVHWY---GGD----A----------------------DDFKDYIDDLH---NRYG---KPIWITEFGC 175 (239)
T ss_pred hcccCCCccEEEEecC---CcC----H----------------------HHHHHHHHHHH---HHhC---CCEEEEeecc
Confidence 221 24455555555 110 0 11333344443 2433 7999999998
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEEeecCCCCCCCCCCCeeeeecCCCCc
Q 018966 273 PTAGGDGALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKMGPEIERHWGLFAPNRQP 341 (348)
Q Consensus 273 PS~G~~~~vas~~na~~y~~~~~~~~~~gtp~~p~~~~~~~~F~~fDe~wK~~~~~E~~wGlf~~~~~~ 341 (348)
.. +... .+.++++.|++..+.++.+ ++. --.++||...+ .+. .....-.|++.+|++
T Consensus 176 ~~-~~~~--~~~~~~~~fl~~~~~~ld~----~~~-VeryawF~~~~-~~~---~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 176 WN-GGSQ--GSDEQQASFLRQALPWLDS----QPY-VERYAWFGFMN-DGS---GVNPNSALLDADGSL 232 (239)
T ss_pred cC-CCCC--CCHHHHHHHHHHHHHHHhc----CCC-eeEEEeccccc-ccC---CCccccccccCCCCc
Confidence 87 2223 7889999999999999961 222 33688888333 322 245666777777754
No 10
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=97.41 E-value=0.0055 Score=58.71 Aligned_cols=96 Identities=19% Similarity=0.147 Sum_probs=55.6
Q ss_pred eeeEEecCCCCCC---CCHHH---HHHHHhcCCCCeEEeec--CCHHHHHHHhcCCcEEEEecCCcch---hHh------
Q 018966 34 QIGVCYGMKAKIL---PSKRD---VVALYNQNNIRRMRLYD--PNIEALEALRGSNIEVMLGLPNENL---QRI------ 96 (348)
Q Consensus 34 ~~Gi~Y~~~~~~~---~s~~~---v~~ll~~~~~~~VRlY~--~d~~vl~A~~~~gikV~lGv~~~~~---~~~------ 96 (348)
..|+|+....... .+.++ .++++|..|++.||+.. .++..+.+|-+.||-|+.-++.... ...
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 5699988764332 33433 45789999999999964 3579999999999999987765110 000
Q ss_pred ---hhhHHHHHHHHHhhccccCCCceEEEEEecccc
Q 018966 97 ---ASNQAEANTWVQNNVRNFANNVKFKYIAVGNEA 129 (348)
Q Consensus 97 ---a~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNE~ 129 (348)
....+...+.+++.|.++...-.|..=.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 011122223345556555433457788899999
No 11
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.44 E-value=0.012 Score=59.96 Aligned_cols=277 Identities=19% Similarity=0.264 Sum_probs=130.5
Q ss_pred HHHHHHHhcCCCCeEEeec------C-------C-------HHHHHHHhcCCcEEEEecCCcchhHhhh------hHHHH
Q 018966 50 RDVVALYNQNNIRRMRLYD------P-------N-------IEALEALRGSNIEVMLGLPNENLQRIAS------NQAEA 103 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY~------~-------d-------~~vl~A~~~~gikV~lGv~~~~~~~~a~------~~~~a 103 (348)
+|+++|+++.|++..|.== + | .+++..|++.||+.++.+..-+++..-. +++ .
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~-~ 139 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRE-T 139 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTH-H
T ss_pred hHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHH-H
Confidence 5788999999999998741 1 2 3688999999999999999766543211 111 1
Q ss_pred HHHHHhh----ccccCCCceEEEEEeccccCCC-------CC------c-------hhHHHHHHHHHHHHHHhCCCCCce
Q 018966 104 NTWVQNN----VRNFANNVKFKYIAVGNEAKPG-------DN------F-------ARYLVPAMRNIQNAINGAGLGNQI 159 (348)
Q Consensus 104 ~~wv~~~----i~~~~~~~~I~~I~VGNE~l~~-------~~------~-------~~~Ll~~i~~v~~aL~~~gl~~~v 159 (348)
..++.+. ...+ ++.|+.-+.=||+..- +. . ...++.+-..+.+.+++.+- +.
T Consensus 140 ~~~F~~Ya~~~~~~~--gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~--~~ 215 (455)
T PF00232_consen 140 VDWFARYAEFVFERF--GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYP--DG 215 (455)
T ss_dssp HHHHHHHHHHHHHHH--TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTC--TS
T ss_pred HHHHHHHHHHHHHHh--CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhccc--ce
Confidence 1222222 2233 4678888888998641 11 1 22344444455556666553 35
Q ss_pred EEEeeeecccccccCCCC---C--cc---------------cccCccchh--------------hHHHHHHhhcCCCcee
Q 018966 160 KVSTVIETGALDESFPPS---R--GS---------------FKQDYRPIL--------------DPLIRFLNDNRSPLLV 205 (348)
Q Consensus 160 ~VtTa~~~~~~~~~~pPS---~--~~---------------f~~~~~~~l--------------~~~ldfL~~~~d~~~v 205 (348)
+|+.+.......- ..|+ . +. +..+....+ .+.+..|....|++++
T Consensus 216 ~IGi~~~~~~~~P-~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGi 294 (455)
T PF00232_consen 216 KIGIALNFSPFYP-LSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGI 294 (455)
T ss_dssp EEEEEEEEEEEEE-SSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEE
T ss_pred EEeccccccccCC-CCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhh
Confidence 7777666542210 0011 0 00 000111111 1123334567999999
Q ss_pred cccccccccCC--CCCCcccc---cccc---CCceeccCCcc-hhcHHHHHHHHHHHHHHHhCCCCCcEEEeeeccCCCC
Q 018966 206 NLYPYFAIAGN--RQISLDYA---LFRS---QQTVVSDGSLS-YRSLFDAILDAVYAALEKTGGGSLDIVISESGWPTAG 276 (348)
Q Consensus 206 N~yPff~~~~~--~~i~~~~a---~f~~---~~~~~~d~~~~-y~~~fda~~d~~~~a~~~~g~~~~~vvItETGWPS~G 276 (348)
|-|.=---... ......+. .+.. +.....+.+.. |-.-+-.++.-++ ++ ++++||+|||.|++...
T Consensus 295 NYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~L~~l~---~~--Y~~~pI~ITENG~~~~~ 369 (455)
T PF00232_consen 295 NYYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRDVLRYLK---DR--YGNPPIYITENGIGDPD 369 (455)
T ss_dssp EESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHHHHHHHH---HH--HTSSEEEEEEE---EET
T ss_pred ccccceeeccCccccccccccCCccccccccccccccccCcccccchHhhhhhhhc---cc--cCCCcEEEecccccccc
Confidence 98862222111 11111111 0100 00011122211 1111221221111 12 45689999999998776
Q ss_pred CC--CCCCCHHHHHHHHHHHHHH----HHhcCCCCCCCCceEEEEEeecCC-CCCCCCCCCeeeeecCC------CCcee
Q 018966 277 GD--GALTNVDNARTYNNNLIQH----VKRGSPKRPGRPIETYIFAMFDEN-GKMGPEIERHWGLFAPN------RQPKY 343 (348)
Q Consensus 277 ~~--~~vas~~na~~y~~~~~~~----~~~gtp~~p~~~~~~~~F~~fDe~-wK~~~~~E~~wGlf~~~------~~~Ky 343 (348)
.. +. -....--.|++.-+.. ++.|.+-+ -+|..++.|-- |. .+..+.|||++.| |+||-
T Consensus 370 ~~~~~~-v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~-----GY~~WSl~Dn~Ew~--~Gy~~rfGl~~VD~~~~~~R~pK~ 441 (455)
T PF00232_consen 370 EVDDGK-VDDDYRIDYLQDHLNQVLKAIEDGVNVR-----GYFAWSLLDNFEWA--EGYKKRFGLVYVDFFDTLKRTPKK 441 (455)
T ss_dssp TCTTSH-BSHHHHHHHHHHHHHHHHHHHHTT-EEE-----EEEEETSB---BGG--GGGGSE--SEEEETTTTTEEEEBH
T ss_pred cccccC-cCcHHHHHHHHHHHHHHHhhhccCCCee-----eEeeeccccccccc--cCccCccCceEEcCCCCcCeeecc
Confidence 42 10 1122223455544444 43454322 36666777732 43 3489999999999 88875
Q ss_pred ec
Q 018966 344 QI 345 (348)
Q Consensus 344 ~l 345 (348)
+.
T Consensus 442 S~ 443 (455)
T PF00232_consen 442 SA 443 (455)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 12
>TIGR03356 BGL beta-galactosidase.
Probab=96.29 E-value=1.1 Score=45.46 Aligned_cols=79 Identities=16% Similarity=0.097 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCCCeEEeec------------CC-------HHHHHHHhcCCcEEEEecCCcchhH-------hhhh--HH
Q 018966 50 RDVVALYNQNNIRRMRLYD------------PN-------IEALEALRGSNIEVMLGLPNENLQR-------IASN--QA 101 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY~------------~d-------~~vl~A~~~~gikV~lGv~~~~~~~-------~a~~--~~ 101 (348)
.+.++++++.|++++|+== .| .+++..|.+.||++++.+..-+.+. +.+. ++
T Consensus 57 ~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~gGw~~~~~~~ 136 (427)
T TIGR03356 57 EEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDRGGWLNRDTAE 136 (427)
T ss_pred HHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhcCCCCChHHHH
Confidence 5678999999999998621 12 3688899999999999996544332 1111 11
Q ss_pred HHHHHHHhhccccCCCceEEEEEeccccC
Q 018966 102 EANTWVQNNVRNFANNVKFKYIAVGNEAK 130 (348)
Q Consensus 102 ~a~~wv~~~i~~~~~~~~I~~I~VGNE~l 130 (348)
...+..+.-...| .+.|+..+.=||+.
T Consensus 137 ~f~~ya~~~~~~~--~d~v~~w~t~NEp~ 163 (427)
T TIGR03356 137 WFAEYAAVVAERL--GDRVKHWITLNEPW 163 (427)
T ss_pred HHHHHHHHHHHHh--CCcCCEEEEecCcc
Confidence 1122122222333 34677777777875
No 13
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=94.56 E-value=1.9 Score=48.59 Aligned_cols=95 Identities=16% Similarity=0.043 Sum_probs=58.9
Q ss_pred eeeEEecCCCCC---CCCHHH---HHHHHhcCCCCeEEeecC--CHHHHHHHhcCCcEEEEecCCc--------------
Q 018966 34 QIGVCYGMKAKI---LPSKRD---VVALYNQNNIRRMRLYDP--NIEALEALRGSNIEVMLGLPNE-------------- 91 (348)
Q Consensus 34 ~~Gi~Y~~~~~~---~~s~~~---v~~ll~~~~~~~VRlY~~--d~~vl~A~~~~gikV~lGv~~~-------------- 91 (348)
..|+|+-..... ..++++ .++++|+.|++.||+-.. ++..++.|-+.||-|+--+...
T Consensus 336 lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 458887654322 123443 467999999999998642 4688999999999998754221
Q ss_pred chhHhhhhHHHHHHHHHhhccccCCCceEEEEEeccccCC
Q 018966 92 NLQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKP 131 (348)
Q Consensus 92 ~~~~~a~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNE~l~ 131 (348)
+.+.+. ++..+-+++.|.++...-.|..=++|||.-.
T Consensus 416 ~~p~~~---~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~ 452 (1021)
T PRK10340 416 DDPQWE---KVYVDRIVRHIHAQKNHPSIIIWSLGNESGY 452 (1021)
T ss_pred CCHHHH---HHHHHHHHHHHHhCCCCCEEEEEECccCccc
Confidence 111111 1112224455655543456888889999854
No 14
>PRK09936 hypothetical protein; Provisional
Probab=91.89 E-value=5.8 Score=38.20 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=68.3
Q ss_pred CeeeEEecCCCCC-CCCHHHHH---HHHhcCCCCeEEee-----cCC--------HHHHHHHhcCCcEEEEecCCcch--
Q 018966 33 AQIGVCYGMKAKI-LPSKRDVV---ALYNQNNIRRMRLY-----DPN--------IEALEALRGSNIEVMLGLPNENL-- 93 (348)
Q Consensus 33 ~~~Gi~Y~~~~~~-~~s~~~v~---~ll~~~~~~~VRlY-----~~d--------~~vl~A~~~~gikV~lGv~~~~~-- 93 (348)
+..|+=|.|.++| --++++.. +.++..|++.+=+- +.| .+.++++.+.||+|.+|++.|..
T Consensus 20 a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~y~ 99 (296)
T PRK09936 20 AMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYADPEFF 99 (296)
T ss_pred ccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCChHHH
Confidence 3456779999887 45677654 55567788766542 112 47888899999999999998742
Q ss_pred hHhhhhHHHHHHHHHhhcccc---------CCCceEEEEEeccccC-CCCC---chhHHHHHHHHHHHHHH
Q 018966 94 QRIASNQAEANTWVQNNVRNF---------ANNVKFKYIAVGNEAK-PGDN---FARYLVPAMRNIQNAIN 151 (348)
Q Consensus 94 ~~~a~~~~~a~~wv~~~i~~~---------~~~~~I~~I~VGNE~l-~~~~---~~~~Ll~~i~~v~~aL~ 151 (348)
..+..+.++.++|++...... .++..+++--.-=|.= +.-. --+.|+..++++.+.|.
T Consensus 100 q~~~~d~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~~l~ 170 (296)
T PRK09936 100 MHQKQDGAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELDDLNWRDEARRQPLLTWLNAAQRLID 170 (296)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccchhcccCHHHHHHHHHHHHHHHHhCC
Confidence 223333334444444322111 0223344433333432 1111 23466777777777765
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=89.92 E-value=1.2 Score=44.14 Aligned_cols=82 Identities=13% Similarity=0.208 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCCCeEEeecC------------C----HHHHHHHhcCCcEEEEecCCcchhHh-----------------
Q 018966 50 RDVVALYNQNNIRRMRLYDP------------N----IEALEALRGSNIEVMLGLPNENLQRI----------------- 96 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY~~------------d----~~vl~A~~~~gikV~lGv~~~~~~~~----------------- 96 (348)
++++++++..|++.|||-.. | ..+|..+++.||+|+|+++....+.+
T Consensus 13 ~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~ 92 (374)
T PF02449_consen 13 EEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRR 92 (374)
T ss_dssp HHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSB
T ss_pred HHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCc
Confidence 56788999999999997321 1 46888899999999999974422111
Q ss_pred ---------h----hhHHHHHHHHHhhccccCCCceEEEEEeccccCC
Q 018966 97 ---------A----SNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKP 131 (348)
Q Consensus 97 ---------a----~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNE~l~ 131 (348)
. .-.+.+.+.++..+..|.....|.++.|+||.-.
T Consensus 93 ~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 93 RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred CccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 0 0022344444444455644567999999999755
No 16
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=81.19 E-value=68 Score=33.03 Aligned_cols=250 Identities=15% Similarity=0.186 Sum_probs=112.6
Q ss_pred HHHHHhcCCCCeEEeecC-------------------C----HHHHHHHhcCCcEEEEecCCcc--hh-----Hh-----
Q 018966 52 VVALYNQNNIRRMRLYDP-------------------N----IEALEALRGSNIEVMLGLPNEN--LQ-----RI----- 96 (348)
Q Consensus 52 v~~ll~~~~~~~VRlY~~-------------------d----~~vl~A~~~~gikV~lGv~~~~--~~-----~~----- 96 (348)
+..+.+..||++||+.+. | ..++..+.+.||+-++-+-... +. .+
T Consensus 45 l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~~~~~~~~~ 124 (486)
T PF01229_consen 45 LRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFMPMALASGYQTVFWYKGN 124 (486)
T ss_dssp HHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--EETTTTEE
T ss_pred HHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCCccccccCC
Confidence 344555678999998742 0 3688888999999877654211 00 00
Q ss_pred ---hhhHHH----HHHHHHhhccccCCCceEE--EEEeccccCCCC----CchhHHHHHHHHHHHHHHhCCCCCceEEEe
Q 018966 97 ---ASNQAE----ANTWVQNNVRNFANNVKFK--YIAVGNEAKPGD----NFARYLVPAMRNIQNAINGAGLGNQIKVST 163 (348)
Q Consensus 97 ---a~~~~~----a~~wv~~~i~~~~~~~~I~--~I~VGNE~l~~~----~~~~~Ll~~i~~v~~aL~~~gl~~~v~VtT 163 (348)
..+.++ ..++++..+.+| +...|+ ..=|=||+=... ...++-.+.-+.+.++|++.. +.++|+-
T Consensus 125 ~~pp~~~~~W~~lv~~~~~h~~~RY-G~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGG 201 (486)
T PF01229_consen 125 ISPPKDYEKWRDLVRAFARHYIDRY-GIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGG 201 (486)
T ss_dssp -S-BS-HHHHHHHHHHHHHHHHHHH-HHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEE
T ss_pred cCCcccHHHHHHHHHHHHHHHHhhc-CCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccC
Confidence 011222 222333333444 111111 345688865432 245567777888888888875 3589997
Q ss_pred eeecccccccCCCCCcccccCccchhhHHHHHHhh---cCCCceecccccccccCCCCCCccccccccCCceeccCCcch
Q 018966 164 VIETGALDESFPPSRGSFKQDYRPILDPLIRFLND---NRSPLLVNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSY 240 (348)
Q Consensus 164 a~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfL~~---~~d~~~vN~yPff~~~~~~~i~~~~a~f~~~~~~~~d~~~~y 240 (348)
+-.. +.. ...+...++|+.. .-|++..|.||+-..... .-.. ..... ..
T Consensus 202 p~~~--~~~-------------~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~~~---~~~~------~~~~~----~~ 253 (486)
T PF01229_consen 202 PAFA--WAY-------------DEWCEDFLEFCKGNNCPLDFISFHSYGTDSAEDI---NENM------YERIE----DS 253 (486)
T ss_dssp EEEE--TT--------------THHHHHHHHHHHHCT---SEEEEEEE-BESESE----SS-E------EEEB------H
T ss_pred cccc--ccH-------------HHHHHHHHHHHhcCCCCCCEEEEEeccccccccc---chhH------Hhhhh----hH
Confidence 6110 110 1334566666654 346667888885322110 0000 00000 01
Q ss_pred hcHHHHHHHHHHHHHHHhCCCCCcEEEeeeccCCCCCCC--CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEE--
Q 018966 241 RSLFDAILDAVYAALEKTGGGSLDIVISESGWPTAGGDG--ALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFA-- 316 (348)
Q Consensus 241 ~~~fda~~d~~~~a~~~~g~~~~~vvItETGWPS~G~~~--~vas~~na~~y~~~~~~~~~~gtp~~p~~~~~~~~F~-- 316 (348)
..+++ ++..+...+...+.+++++.++| |.+.-.+. .--|.-+|....+++++... ...+.|-+-
T Consensus 254 ~~~~~-~~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~--------~~l~~~sywt~ 322 (486)
T PF01229_consen 254 RRLFP-ELKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDG--------AFLDSFSYWTF 322 (486)
T ss_dssp HHHHH-HHHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGG--------GT-SEEEES-S
T ss_pred HHHHH-HHHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhh--------hhhhhhhccch
Confidence 11222 12223233445567889999999 87655421 01344555555555666552 123333322
Q ss_pred --eecCCCCCCCCCCCeeeeecCCCCcee
Q 018966 317 --MFDENGKMGPEIERHWGLFAPNRQPKY 343 (348)
Q Consensus 317 --~fDe~wK~~~~~E~~wGlf~~~~~~Ky 343 (348)
.|.|.-.....+-..|||++.+|-+|.
T Consensus 323 sD~Fee~~~~~~pf~ggfGLlt~~gI~KP 351 (486)
T PF01229_consen 323 SDRFEENGTPRKPFHGGFGLLTKLGIPKP 351 (486)
T ss_dssp BS---TTSS-SSSSSS-S-SEECCCEE-H
T ss_pred hhhhhccCCCCCceecchhhhhccCCCch
Confidence 233332221236777999999987774
No 17
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=74.39 E-value=13 Score=36.70 Aligned_cols=92 Identities=14% Similarity=0.169 Sum_probs=55.1
Q ss_pred CCeEEeecC-CHHHHHHHhcCCcEEEEecCCcchhHhhhhHHHHHHHHHhhccccCCCceEEEEEeccccCCC-C-Cchh
Q 018966 61 IRRMRLYDP-NIEALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPG-D-NFAR 137 (348)
Q Consensus 61 ~~~VRlY~~-d~~vl~A~~~~gikV~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNE~l~~-~-~~~~ 137 (348)
+++|-+|+. |++++..+++.|++|++..-.. ...+. +.+.-.++++. +..+.....+.+|-+==|-... + ...+
T Consensus 56 ~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l~-~~~~R~~fi~s-iv~~~~~~gfDGIdIDwE~p~~~~~~d~~ 132 (358)
T cd02875 56 VTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQIS-NPTYRTQWIQQ-KVELAKSQFMDGINIDIEQPITKGSPEYY 132 (358)
T ss_pred ceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHcC-CHHHHHHHHHH-HHHHHHHhCCCeEEEcccCCCCCCcchHH
Confidence 677888864 6899999999999999864322 12222 22222233322 2222222235566554454432 1 2456
Q ss_pred HHHHHHHHHHHHHHhCCC
Q 018966 138 YLVPAMRNIQNAINGAGL 155 (348)
Q Consensus 138 ~Ll~~i~~v~~aL~~~gl 155 (348)
.+...|+++|++|++.+.
T Consensus 133 ~~t~llkelr~~l~~~~~ 150 (358)
T cd02875 133 ALTELVKETTKAFKKENP 150 (358)
T ss_pred HHHHHHHHHHHHHhhcCC
Confidence 788999999999988754
No 18
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=73.79 E-value=5.3 Score=41.04 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCCCeEEeec------------CC-------HHHHHHHhcCCcEEEEecCCcchhH
Q 018966 50 RDVVALYNQNNIRRMRLYD------------PN-------IEALEALRGSNIEVMLGLPNENLQR 95 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY~------------~d-------~~vl~A~~~~gikV~lGv~~~~~~~ 95 (348)
+|+++|+++.|++.-|.== .| .+++.+|.+.||+-++.+..-+++.
T Consensus 57 ~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 121 (469)
T PRK13511 57 PEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPE 121 (469)
T ss_pred HHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcH
Confidence 6788999999988887521 12 3689999999999999999876654
No 19
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=73.58 E-value=27 Score=34.20 Aligned_cols=175 Identities=13% Similarity=0.199 Sum_probs=70.0
Q ss_pred HHHHHHhcCCcEEEEecCCcchhHhhhhHHHHHHHHHhhcc---ccC--CCceEEEEEeccccCCCC----CchhHHHHH
Q 018966 72 EALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVR---NFA--NNVKFKYIAVGNEAKPGD----NFARYLVPA 142 (348)
Q Consensus 72 ~vl~A~~~~gikV~lGv~~~~~~~~a~~~~~a~~wv~~~i~---~~~--~~~~I~~I~VGNE~l~~~----~~~~~Ll~~ 142 (348)
.+-+-+.++|++|+.|+.--.-.........--.|=-+|.. +|. ..-.|.+-=.|||.--.+ -++.++..-
T Consensus 113 ~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD 192 (319)
T PF03662_consen 113 ELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKD 192 (319)
T ss_dssp HHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHH
T ss_pred HHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHH
Confidence 45555678999999999753111100111222345555533 331 244577788899965332 167888888
Q ss_pred HHHHHHHHHhC---CCCCceEEEeeeecccccccCCCCCcccccCccchhhHHHHHHhh-cCCCceecccccccccCCCC
Q 018966 143 MRNIQNAINGA---GLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLND-NRSPLLVNLYPYFAIAGNRQ 218 (348)
Q Consensus 143 i~~v~~aL~~~---gl~~~v~VtTa~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfL~~-~~d~~~vN~yPff~~~~~~~ 218 (348)
..++|+.|+.. .+.+ -.|.-+... |. ...+.+.|+-..+ .-|.+.-|+|+. ....+..
T Consensus 193 ~~~Lr~il~~iy~~~~~~-P~v~gP~~~-------------~d---~~w~~~FL~~~g~~~vD~vT~H~Y~l-g~g~d~~ 254 (319)
T PF03662_consen 193 FIQLRKILNEIYKNALPG-PLVVGPGGF-------------FD---ADWLKEFLKASGPGVVDAVTWHHYNL-GSGRDPA 254 (319)
T ss_dssp H---HHHHHHHHHH-TT----EEEEEES-------------S----GGGHHHHHHHTTTT--SEEEEEEEEE---TT-TT
T ss_pred HHHHHHHHHHHHhcCCCC-CeEECCCCC-------------CC---HHHHHHHHHhcCCCccCEEEEEecCC-CCCchHH
Confidence 88888877653 1111 235544321 11 1334555554444 367888888863 2211110
Q ss_pred CCccccccccCCceeccCCcchhcHHHHHHHHHHHHHHHhCCCCCcEEEeeeccCCCCC
Q 018966 219 ISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWPTAGG 277 (348)
Q Consensus 219 i~~~~a~f~~~~~~~~d~~~~y~~~fda~~d~~~~a~~~~g~~~~~vvItETGWPS~G~ 277 (348)
. .+ . +.++. |=+.+..++..+...+++.+ +++++|++|||=...|+
T Consensus 255 l-~~-~--------~l~p~--~Ld~~~~~~~~~~~~v~~~~-p~~~~WlGEtg~Ay~gG 300 (319)
T PF03662_consen 255 L-IE-D--------FLNPS--YLDTLADTFQKLQQVVQEYG-PGKPVWLGETGSAYNGG 300 (319)
T ss_dssp --HH-H--------HTS----HHHHHHHHHHHHH-----HH-H---EEEEEEEEESTT-
T ss_pred H-HH-H--------hcChh--hhhHHHHHHHHHhhhhcccC-CCCCeEEeCcccccCCC
Confidence 0 00 0 11211 11222233333333333333 78899999999877665
No 20
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=73.14 E-value=38 Score=38.40 Aligned_cols=95 Identities=17% Similarity=0.053 Sum_probs=60.2
Q ss_pred eeeEEecCCCCC---CCCHHH---HHHHHhcCCCCeEEeec--CCHHHHHHHhcCCcEEEEecCCcc-----------hh
Q 018966 34 QIGVCYGMKAKI---LPSKRD---VVALYNQNNIRRMRLYD--PNIEALEALRGSNIEVMLGLPNEN-----------LQ 94 (348)
Q Consensus 34 ~~Gi~Y~~~~~~---~~s~~~---v~~ll~~~~~~~VRlY~--~d~~vl~A~~~~gikV~lGv~~~~-----------~~ 94 (348)
..|+|+-..... ..++++ .++++|..|++.||+-. .++..++.|-+.||-|+--++... .+
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 458887654322 234544 45789999999999943 257899999999999987754321 11
Q ss_pred HhhhhHHHHHHHHHhhccccCCCceEEEEEeccccCC
Q 018966 95 RIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKP 131 (348)
Q Consensus 95 ~~a~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNE~l~ 131 (348)
.+. ++..+-+++.|.+....-.|..=++|||.-.
T Consensus 432 ~~~---~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~ 465 (1027)
T PRK09525 432 RWL---PAMSERVTRMVQRDRNHPSIIIWSLGNESGH 465 (1027)
T ss_pred HHH---HHHHHHHHHHHHhCCCCCEEEEEeCccCCCc
Confidence 111 1122224455555544456888999999743
No 21
>PLN02814 beta-glucosidase
Probab=64.06 E-value=11 Score=39.20 Aligned_cols=79 Identities=20% Similarity=0.202 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCCCeEEeec------------CC-------HHHHHHHhcCCcEEEEecCCcchhHhhhhH------HHHH
Q 018966 50 RDVVALYNQNNIRRMRLYD------------PN-------IEALEALRGSNIEVMLGLPNENLQRIASNQ------AEAN 104 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY~------------~d-------~~vl~A~~~~gikV~lGv~~~~~~~~a~~~------~~a~ 104 (348)
+|+++|+++.|++.-|.== .+ .+++.+|.+.||+-++.+..-+++..-.+. .+..
T Consensus 80 ~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i 159 (504)
T PLN02814 80 KEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKII 159 (504)
T ss_pred HHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHH
Confidence 5688999999988877521 12 368999999999999999987665421111 1111
Q ss_pred HHHHhh----ccccCCCceEEEEEeccccC
Q 018966 105 TWVQNN----VRNFANNVKFKYIAVGNEAK 130 (348)
Q Consensus 105 ~wv~~~----i~~~~~~~~I~~I~VGNE~l 130 (348)
.++.+. ..+| +++|+.-+.=||+.
T Consensus 160 ~~F~~YA~~~f~~f--gdrVk~WiT~NEP~ 187 (504)
T PLN02814 160 EDFTAFADVCFREF--GEDVKLWTTINEAT 187 (504)
T ss_pred HHHHHHHHHHHHHh--CCcCCEEEeccccc
Confidence 112211 2233 46777777777775
No 22
>PLN02849 beta-glucosidase
Probab=63.45 E-value=11 Score=39.32 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCCeEEee-------c-----CC-------HHHHHHHhcCCcEEEEecCCcchhH
Q 018966 50 RDVVALYNQNNIRRMRLY-------D-----PN-------IEALEALRGSNIEVMLGLPNENLQR 95 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY-------~-----~d-------~~vl~A~~~~gikV~lGv~~~~~~~ 95 (348)
.|+++|+++.|++.-|.= - .| .+++.+|.+.||+-++.+..-+++-
T Consensus 82 ~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~ 146 (503)
T PLN02849 82 KEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQ 146 (503)
T ss_pred HHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcH
Confidence 567899999998887752 1 12 3689999999999999999876554
No 23
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=63.39 E-value=12 Score=33.07 Aligned_cols=83 Identities=18% Similarity=0.285 Sum_probs=44.7
Q ss_pred HHHHHHhcC--CcEEEEecCCcchhH---hhhhHHHHHHHHHhhccccCCCceEEEEEeccccCCCCC--chhHHHHHHH
Q 018966 72 EALEALRGS--NIEVMLGLPNENLQR---IASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDN--FARYLVPAMR 144 (348)
Q Consensus 72 ~vl~A~~~~--gikV~lGv~~~~~~~---~a~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNE~l~~~~--~~~~Ll~~i~ 144 (348)
.-+..+++. |+||++.+....... +..+.+..++ +.+++..+.....+++|-+==|.....+ ..+.++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~-f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAA-FANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHH-HHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 345555554 999999888643221 2333322222 1222222222224555555434432211 3578999999
Q ss_pred HHHHHHHhCCC
Q 018966 145 NIQNAINGAGL 155 (348)
Q Consensus 145 ~v~~aL~~~gl 155 (348)
++|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999987654
No 24
>PLN02998 beta-glucosidase
Probab=62.81 E-value=12 Score=38.77 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCCCeEEeec------------CC-------HHHHHHHhcCCcEEEEecCCcchhH
Q 018966 50 RDVVALYNQNNIRRMRLYD------------PN-------IEALEALRGSNIEVMLGLPNENLQR 95 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY~------------~d-------~~vl~A~~~~gikV~lGv~~~~~~~ 95 (348)
+|+++++++.|++.-|.== .| .+++.+|.+.||+-++.+..-+++.
T Consensus 85 ~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~ 149 (497)
T PLN02998 85 KEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQ 149 (497)
T ss_pred HHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCH
Confidence 5688999999988887521 12 3689999999999999999876543
No 25
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=62.46 E-value=16 Score=37.67 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCCeEEeec-------------CC-------HHHHHHHhcCCcEEEEecCCcchhH
Q 018966 50 RDVVALYNQNNIRRMRLYD-------------PN-------IEALEALRGSNIEVMLGLPNENLQR 95 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY~-------------~d-------~~vl~A~~~~gikV~lGv~~~~~~~ 95 (348)
+|+++|+++.|++.-|.== .+ .+++.+|.+.||+-++.++.-+++.
T Consensus 76 ~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~ 141 (478)
T PRK09593 76 KEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPM 141 (478)
T ss_pred HHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCH
Confidence 6788999999988887521 12 3688999999999999998766553
No 26
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=62.20 E-value=35 Score=24.66 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHhcCCCCeEEeecCC-----HHHHHHHhcCCcEEEEecCC
Q 018966 46 LPSKRDVVALYNQNNIRRMRLYDPN-----IEALEALRGSNIEVMLGLPN 90 (348)
Q Consensus 46 ~~s~~~v~~ll~~~~~~~VRlY~~d-----~~vl~A~~~~gikV~lGv~~ 90 (348)
.-+++++++..+++|++.|=+=+-+ ....+.+++.||+++.|+..
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 3457889999999999998876654 45556667899999999865
No 27
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=62.20 E-value=10 Score=33.37 Aligned_cols=37 Identities=27% Similarity=0.444 Sum_probs=26.6
Q ss_pred HHHHhcCCCCeEEeecCCHHHHHHHhcCCcEEEEecC
Q 018966 53 VALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLP 89 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gikV~lGv~ 89 (348)
+++|+..|+++||+.+.+|.-+.++.+.||+|.=-++
T Consensus 132 aqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 132 AQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 4899999999999999999999999999999875443
No 28
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=61.02 E-value=23 Score=36.57 Aligned_cols=46 Identities=17% Similarity=0.354 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCCeEEe-------ec------CC-------HHHHHHHhcCCcEEEEecCCcchhH
Q 018966 50 RDVVALYNQNNIRRMRL-------YD------PN-------IEALEALRGSNIEVMLGLPNENLQR 95 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRl-------Y~------~d-------~~vl~A~~~~gikV~lGv~~~~~~~ 95 (348)
+|+++|+++.|++.-|. += .+ .+++..|.+.||+-++.+..-+++-
T Consensus 70 ~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~ 135 (476)
T PRK09589 70 KEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPY 135 (476)
T ss_pred HHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCH
Confidence 57889999999888775 21 12 3688999999999999999876543
No 29
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=58.63 E-value=27 Score=27.04 Aligned_cols=47 Identities=11% Similarity=-0.005 Sum_probs=32.3
Q ss_pred CceEEEEEeccc-cCCC--------CC-chhHHHHHHHHHHHHHHhCCCCCceEEEeee
Q 018966 117 NVKFKYIAVGNE-AKPG--------DN-FARYLVPAMRNIQNAINGAGLGNQIKVSTVI 165 (348)
Q Consensus 117 ~~~I~~I~VGNE-~l~~--------~~-~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa~ 165 (348)
..+|.+-=|+|| +... ++ ..+.+.+.|+++-+.+++..= ..|||+..
T Consensus 8 ~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP--~~pvt~g~ 64 (88)
T PF12876_consen 8 DPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDP--SQPVTSGF 64 (88)
T ss_dssp GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-T--TS-EE--B
T ss_pred CCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCC--CCcEEeec
Confidence 578999999999 6521 11 467899999999999998764 57998753
No 30
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=58.29 E-value=15 Score=37.99 Aligned_cols=45 Identities=20% Similarity=0.416 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCCCeEEe-------ec------CC-------HHHHHHHhcCCcEEEEecCCcchh
Q 018966 50 RDVVALYNQNNIRRMRL-------YD------PN-------IEALEALRGSNIEVMLGLPNENLQ 94 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRl-------Y~------~d-------~~vl~A~~~~gikV~lGv~~~~~~ 94 (348)
+|+++|+++.|++.-|+ +- .+ .+++.+|.+.||+.++.+..-+++
T Consensus 72 ~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP 136 (477)
T PRK15014 72 KEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMP 136 (477)
T ss_pred HHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 67889999998888775 21 12 368999999999999999765543
No 31
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.96 E-value=36 Score=33.94 Aligned_cols=58 Identities=17% Similarity=0.407 Sum_probs=36.6
Q ss_pred chhcHHHHHHHHHHHHHHHhCCCCCcEEEeeeccCCCCC-CCC---CCCHHHHHHHHHHHHHHHH
Q 018966 239 SYRSLFDAILDAVYAALEKTGGGSLDIVISESGWPTAGG-DGA---LTNVDNARTYNNNLIQHVK 299 (348)
Q Consensus 239 ~y~~~fda~~d~~~~a~~~~g~~~~~vvItETGWPS~G~-~~~---vas~~na~~y~~~~~~~~~ 299 (348)
.|.|-|++-+-.......-.|.+..+|+.| |||+|. -++ -.|-..++.-++.+++.+.
T Consensus 124 GfNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La 185 (377)
T COG4782 124 GFNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLA 185 (377)
T ss_pred ccCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHH
Confidence 356666554433323333456777888887 999997 221 3556667777777877775
No 32
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=53.60 E-value=1.3e+02 Score=29.68 Aligned_cols=56 Identities=11% Similarity=0.011 Sum_probs=34.2
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCceEEEeeeecccccccCCCCCcccccCccchhhHHHHHHhhcCCCceeccccc
Q 018966 135 FARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPY 210 (348)
Q Consensus 135 ~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfL~~~~d~~~vN~yPf 210 (348)
..+.+.+.++.+++.|++.. + +.+|+|-.... +.. ++ +... +++..|++..|.||.
T Consensus 207 ~~~~~~~~~~~~~~~ir~~~-p-~~~vt~n~~~~-~~~-----------~~-----d~~~-~a~~~D~~~~d~Y~~ 262 (374)
T PF02449_consen 207 QSDRVAEFFRWQADIIREYD-P-DHPVTTNFMGS-WFN-----------GI-----DYFK-WAKYLDVVSWDSYPD 262 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-T-T-EEE-EE-TT---------------SS------HHH-HGGGSSSEEEEE-HH
T ss_pred HHHHHHHHHHHHHHHHHHhC-C-CceEEeCcccc-ccC-----------cC-----CHHH-HHhhCCcceeccccC
Confidence 36778899999999999886 3 47999854222 110 00 1111 457789999999997
No 33
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=52.93 E-value=22 Score=31.97 Aligned_cols=33 Identities=18% Similarity=0.445 Sum_probs=29.8
Q ss_pred HHHHhcCCCCeEEeecCCHHHHHHHhcCCcEEE
Q 018966 53 VALYNQNNIRRMRLYDPNIEALEALRGSNIEVM 85 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gikV~ 85 (348)
.++|+..|++.||+.+..+.=+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 589999999999999998877888999999987
No 34
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=52.79 E-value=22 Score=32.18 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=31.2
Q ss_pred HHHHhcCCCCeEEeecCCHHHHHHHhcCCcEEEEec
Q 018966 53 VALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGL 88 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gikV~lGv 88 (348)
+++|+..|++.||+.+..+.-+.++.+.||+|.=-+
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~~~~ 169 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIVERV 169 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 589999999999999998877889999999997333
No 35
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=52.30 E-value=75 Score=30.37 Aligned_cols=84 Identities=17% Similarity=0.265 Sum_probs=50.5
Q ss_pred CHHHHHHHhcCCcEEEEecCCcc--------hhHhhhhHHHHHHHHHhhccccCCCceEEEEEeccccCCCCCchhHHHH
Q 018966 70 NIEALEALRGSNIEVMLGLPNEN--------LQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFARYLVP 141 (348)
Q Consensus 70 d~~vl~A~~~~gikV~lGv~~~~--------~~~~a~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNE~l~~~~~~~~Ll~ 141 (348)
+++++.++++.|+||++.|.+.. ...+..+.+.-+. +.+++..+.....+.+|.+-=|.+. .+..+....
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~-fi~~iv~~l~~~~~DGidiDwE~~~-~~d~~~~~~ 124 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQR-LINNILALAKKYGYDGVNIDFENVP-PEDREAYTQ 124 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHH-HHHHHHHHHHHhCCCcEEEecccCC-HHHHHHHHH
Confidence 36888888888999999886532 1223333332222 2233333222224556666556553 234567889
Q ss_pred HHHHHHHHHHhCCC
Q 018966 142 AMRNIQNAINGAGL 155 (348)
Q Consensus 142 ~i~~v~~aL~~~gl 155 (348)
.|+++|.+|.+.|+
T Consensus 125 fl~~lr~~l~~~~~ 138 (313)
T cd02874 125 FLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHhhhcCc
Confidence 99999999987764
No 36
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=52.28 E-value=40 Score=34.81 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCCCeEEee-------c------CC-------HHHHHHHhcCCcEEEEecCCcchhH
Q 018966 50 RDVVALYNQNNIRRMRLY-------D------PN-------IEALEALRGSNIEVMLGLPNENLQR 95 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY-------~------~d-------~~vl~A~~~~gikV~lGv~~~~~~~ 95 (348)
++.++++++.|++..|+= - .+ .+++.+|.+.||+.++.+..-+++.
T Consensus 74 ~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~ 139 (474)
T PRK09852 74 KEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPM 139 (474)
T ss_pred HHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 567889999998887752 1 13 3688999999999999998876554
No 37
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=52.02 E-value=26 Score=36.19 Aligned_cols=182 Identities=15% Similarity=0.141 Sum_probs=96.7
Q ss_pred HHHhhccccCCCceEEEEEeccccCCCC-CchhHHHHHHHHHHHHHHhCCCCCceEEEeeeecccccccCCCCCcccccC
Q 018966 106 WVQNNVRNFANNVKFKYIAVGNEAKPGD-NFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQD 184 (348)
Q Consensus 106 wv~~~i~~~~~~~~I~~I~VGNE~l~~~-~~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa~~~~~~~~~~pPS~~~f~~~ 184 (348)
.+..-|.+|.-...|.+-..-||.+.+. .++..+.+..+.+.+-++..+=..-|.|+ |...-|..--|+ .+.
T Consensus 125 yvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvG--D~~sp~~~~~py-N~r---- 197 (587)
T COG3934 125 YVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVG--DPASPWPQYAPY-NAR---- 197 (587)
T ss_pred HHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHHHHHHHhhccCCCCeeecC--CcCCcccccCCc-ccc----
Confidence 4455556664456677888899988753 47888888888888888877654434444 332223221122 111
Q ss_pred ccchhhHHHHHHhhcCCCceecccccccccCCCCCCccccccccCCceeccCCcchhc-HHHHHHHHHHHHHHHhCCCCC
Q 018966 185 YRPILDPLIRFLNDNRSPLLVNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRS-LFDAILDAVYAALEKTGGGSL 263 (348)
Q Consensus 185 ~~~~l~~~ldfL~~~~d~~~vN~yPff~~~~~~~i~~~~a~f~~~~~~~~d~~~~y~~-~fda~~d~~~~a~~~~g~~~~ 263 (348)
.+.|+-.-|+||+|+.. + ++.. + ..|-. .+ |- -..+| -+
T Consensus 198 -------------~~vDya~~hLY~hyd~s------l-~~r~---s-------~~yg~~~l----~i----~~~~g--~~ 237 (587)
T COG3934 198 -------------FYVDYAANHLYRHYDTS------L-VSRV---S-------TVYGKPYL----DI----PTIMG--WQ 237 (587)
T ss_pred -------------eeeccccchhhhhccCC------h-hhee---e-------eeecchhh----cc----chhcc--cc
Confidence 24456668999977753 1 1110 0 00111 11 00 01223 26
Q ss_pred cEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEEeecCCCCCC----CCCCCeeeeecCCC
Q 018966 264 DIVISESGWPTAGGDGALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFAMFDENGKMG----PEIERHWGLFAPNR 339 (348)
Q Consensus 264 ~vvItETGWPS~G~~~~vas~~na~~y~~~~~~~~~~gtp~~p~~~~~~~~F~~fDe~wK~~----~~~E~~wGlf~~~~ 339 (348)
||+.-|-|-|++-+ .+|.+.|+-...-....| +-+.-...|+-|-+--.+. ..-|-.|||.+.|+
T Consensus 238 pV~leefGfsta~g------~e~s~ayfiw~~lal~~g-----gdGaLiwclsdf~~gsdd~ey~w~p~el~fgiIradg 306 (587)
T COG3934 238 PVNLEEFGFSTAFG------QENSPAYFIWIRLALDTG-----GDGALIWCLSDFHLGSDDSEYTWGPMELEFGIIRADG 306 (587)
T ss_pred eeeccccCCccccc------ccccchhhhhhhhHHhhc-----CCceEEEEecCCccCCCCCCCccccccceeeeecCCC
Confidence 99999999998643 222333333222222111 1122334444333111111 23688999999999
Q ss_pred Cceeec
Q 018966 340 QPKYQI 345 (348)
Q Consensus 340 ~~Ky~l 345 (348)
.+|+..
T Consensus 307 pek~~a 312 (587)
T COG3934 307 PEKIDA 312 (587)
T ss_pred chhhhH
Confidence 999853
No 38
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=51.67 E-value=35 Score=31.03 Aligned_cols=54 Identities=22% Similarity=0.428 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCCCCCceEEEeeeecccccccCCCCCcccccCccchhh-HHHHHHhhcCCCceeccc
Q 018966 140 VPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILD-PLIRFLNDNRSPLLVNLY 208 (348)
Q Consensus 140 l~~i~~v~~aL~~~gl~~~v~VtTa~~~~~~~~~~pPS~~~f~~~~~~~l~-~~ldfL~~~~d~~~vN~y 208 (348)
-.+++.+.+.+...|+.+ |++.+.... +..+ .+... ++++.+.+.+=|+.+|+-
T Consensus 84 ~~~~~~l~~~~~~~g~~G-v~l~~~~~~-------------~~~~-~~~~~~~~~~~~~~~~~pv~~H~g 138 (273)
T PF04909_consen 84 EDAVEELERALQELGFRG-VKLHPDLGG-------------FDPD-DPRLDDPIFEAAEELGLPVLIHTG 138 (273)
T ss_dssp HHHHHHHHHHHHTTTESE-EEEESSETT-------------CCTT-SGHCHHHHHHHHHHHT-EEEEEES
T ss_pred hhHHHHHHHhccccceee-eEecCCCCc-------------cccc-cHHHHHHHHHHHHhhccceeeecc
Confidence 367788888888889887 887763311 1111 12333 888888888888887743
No 39
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=47.50 E-value=3.5e+02 Score=28.17 Aligned_cols=85 Identities=14% Similarity=0.227 Sum_probs=51.7
Q ss_pred cCCcEEEEecCCcc--------h---hHhh----hh-HHHHHHHHHhhccccCC-CceEEEEEeccccCCC------CC-
Q 018966 79 GSNIEVMLGLPNEN--------L---QRIA----SN-QAEANTWVQNNVRNFAN-NVKFKYIAVGNEAKPG------DN- 134 (348)
Q Consensus 79 ~~gikV~lGv~~~~--------~---~~~a----~~-~~~a~~wv~~~i~~~~~-~~~I~~I~VGNE~l~~------~~- 134 (348)
+.++|++..-|--. . ..+. .+ .++-...+.+.|+.|.. +-.|-+|++.||+... -+
T Consensus 166 ~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s 245 (496)
T PF02055_consen 166 NPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPS 245 (496)
T ss_dssp HTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC-
T ss_pred CCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCc
Confidence 45699999988431 0 1111 11 12333445556666632 5679999999999852 11
Q ss_pred ---chhHHHHHHHH-HHHHHHhCCCCCceEEEe
Q 018966 135 ---FARYLVPAMRN-IQNAINGAGLGNQIKVST 163 (348)
Q Consensus 135 ---~~~~Ll~~i~~-v~~aL~~~gl~~~v~VtT 163 (348)
+++++...|++ +.-+|++.|+..++|+=.
T Consensus 246 ~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~ 278 (496)
T PF02055_consen 246 MGWTPEEQADFIKNYLGPALRKAGLGKDVKILI 278 (496)
T ss_dssp -B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 58889999987 999999999855688754
No 40
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=46.75 E-value=89 Score=28.81 Aligned_cols=40 Identities=15% Similarity=0.256 Sum_probs=22.6
Q ss_pred HhCCCCCcEEEeeeccCCCCC-CCC---CCCHHHHHHHHHHHHHHHH
Q 018966 257 KTGGGSLDIVISESGWPTAGG-DGA---LTNVDNARTYNNNLIQHVK 299 (348)
Q Consensus 257 ~~g~~~~~vvItETGWPS~G~-~~~---vas~~na~~y~~~~~~~~~ 299 (348)
.+++++.+|. -.|||.|. .++ ..+....+..+..++..+.
T Consensus 44 ~~~~~~~~i~---FsWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~ 87 (233)
T PF05990_consen 44 DLGFPGVVIL---FSWPSDGSLLGYFYDRESARFSGPALARFLRDLA 87 (233)
T ss_pred HhCCCceEEE---EEcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4566764444 45999997 121 1334444555566666554
No 41
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=44.00 E-value=63 Score=33.74 Aligned_cols=79 Identities=18% Similarity=0.337 Sum_probs=50.6
Q ss_pred CCCCCcEEEeeeccCCCCCC--------CCCCCHHHHHHHHHHHHHHHH-hcCCCCCCCCceEEEEEeecC-CCCCCCCC
Q 018966 259 GGGSLDIVISESGWPTAGGD--------GALTNVDNARTYNNNLIQHVK-RGSPKRPGRPIETYIFAMFDE-NGKMGPEI 328 (348)
Q Consensus 259 g~~~~~vvItETGWPS~G~~--------~~vas~~na~~y~~~~~~~~~-~gtp~~p~~~~~~~~F~~fDe-~wK~~~~~ 328 (348)
.+.|.+|.|+|-|-+..... ..+.=++..+.|++.+.+.+. .|. +-.-+|..++-|- +|.. +.
T Consensus 404 ~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgv-----nv~GYf~WSLmDnfEw~~--Gy 476 (524)
T KOG0626|consen 404 KYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGV-----NVKGYFVWSLLDNFEWLD--GY 476 (524)
T ss_pred hcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCC-----ceeeEEEeEcccchhhhc--Cc
Confidence 46788999999999986531 001334455666666666654 332 1224888887774 4654 46
Q ss_pred CCeeeeecC------CCCceee
Q 018966 329 ERHWGLFAP------NRQPKYQ 344 (348)
Q Consensus 329 E~~wGlf~~------~~~~Ky~ 344 (348)
.-.||||+. .|.||-+
T Consensus 477 ~~RFGlyyVDf~d~l~R~pK~S 498 (524)
T KOG0626|consen 477 KVRFGLYYVDFKDPLKRYPKLS 498 (524)
T ss_pred ccccccEEEeCCCCCcCCchhH
Confidence 789999995 5666643
No 42
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=42.96 E-value=58 Score=24.15 Aligned_cols=42 Identities=12% Similarity=0.252 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhccccCCCceEEEEEeccccCCCCC----chhHHHHHHHHHHHHHHhC
Q 018966 100 QAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDN----FARYLVPAMRNIQNAINGA 153 (348)
Q Consensus 100 ~~~a~~wv~~~i~~~~~~~~I~~I~VGNE~l~~~~----~~~~Ll~~i~~v~~aL~~~ 153 (348)
.+....|+++||.- |+|.+++++ ....|+|+|+..++.++..
T Consensus 10 L~iLi~WLedNi~~------------es~iiFDNded~tdSa~llp~ie~a~~~~r~l 55 (65)
T PF06117_consen 10 LEILIAWLEDNIDC------------ESDIIFDNDEDKTDSAALLPAIEQARADVRPL 55 (65)
T ss_pred HHHHHHHHHcccCC------------CCCeeecCCCcccchHHHHHHHHHHHHHHHHH
Confidence 45567899988854 556665431 4678999999988887643
No 43
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=42.43 E-value=39 Score=30.35 Aligned_cols=36 Identities=28% Similarity=0.452 Sum_probs=31.1
Q ss_pred HHHHhcCCCCeEEeecCCHHHHHHHhcCCcEEEEec
Q 018966 53 VALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGL 88 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gikV~lGv 88 (348)
+++|+..|++.+|+.+..+.-+.++.+.|++|.=-+
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERV 168 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 589999999999999988777888999999997444
No 44
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=41.77 E-value=3.8e+02 Score=27.00 Aligned_cols=94 Identities=16% Similarity=0.233 Sum_probs=50.0
Q ss_pred HHHHHHhcCCcEEEEecCCcchhH----------------hhhh-HHHHHHHHHhhccccC-CCceEEEEEeccccCCCC
Q 018966 72 EALEALRGSNIEVMLGLPNENLQR----------------IASN-QAEANTWVQNNVRNFA-NNVKFKYIAVGNEAKPGD 133 (348)
Q Consensus 72 ~vl~A~~~~gikV~lGv~~~~~~~----------------~a~~-~~~a~~wv~~~i~~~~-~~~~I~~I~VGNE~l~~~ 133 (348)
..|+++++.|+..+++.-|+..-- +..+ .++-..-+.+-+..|- -+..|++|.-=||+-...
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W 187 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNW 187 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-G
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCC
Confidence 578888889998888877763211 1111 1111111222122110 156799999999998751
Q ss_pred -----C----chhHHHHHHHHHHHHHHhCCCCCceEEEeeeec
Q 018966 134 -----N----FARYLVPAMRNIQNAINGAGLGNQIKVSTVIET 167 (348)
Q Consensus 134 -----~----~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa~~~ 167 (348)
+ ..++....|+.++++|++.||.. +|...+..
T Consensus 188 ~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t--~I~~~Ea~ 228 (384)
T PF14587_consen 188 AGGSQEGCHFTNEEQADVIRALDKALKKRGLST--KISACEAG 228 (384)
T ss_dssp G--SS-B----HHHHHHHHHHHHHHHHHHT-S---EEEEEEES
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCc--eEEecchh
Confidence 1 57889999999999999999974 56666654
No 45
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=41.63 E-value=1.9e+02 Score=25.36 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCcEEEEecCCc
Q 018966 71 IEALEALRGSNIEVMLGLPNE 91 (348)
Q Consensus 71 ~~vl~A~~~~gikV~lGv~~~ 91 (348)
..+|+++.+.||||++|+..+
T Consensus 68 ~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 68 EMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHHcCCEEEEeCCCC
Confidence 368888899999999999976
No 46
>PLN00196 alpha-amylase; Provisional
Probab=40.35 E-value=99 Score=31.50 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=36.6
Q ss_pred cCeeeEEecCCCCCCCCHH---HHHHHHhcCCCCeE-----------------EeecCC----------HHHHHHHhcCC
Q 018966 32 SAQIGVCYGMKAKILPSKR---DVVALYNQNNIRRM-----------------RLYDPN----------IEALEALRGSN 81 (348)
Q Consensus 32 ~~~~Gi~Y~~~~~~~~s~~---~v~~ll~~~~~~~V-----------------RlY~~d----------~~vl~A~~~~g 81 (348)
.-.+|+.+.....++..-. +-+.-|++.||+.| +.|+.| .+++++|.+.|
T Consensus 26 v~~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~G 105 (428)
T PLN00196 26 VLFQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKG 105 (428)
T ss_pred EEEEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCC
Confidence 3368999866543332222 22345666777766 344443 25778888999
Q ss_pred cEEEEecCC
Q 018966 82 IEVMLGLPN 90 (348)
Q Consensus 82 ikV~lGv~~ 90 (348)
|+|++-+=.
T Consensus 106 IkVilDvV~ 114 (428)
T PLN00196 106 VQVIADIVI 114 (428)
T ss_pred CEEEEEECc
Confidence 999997654
No 47
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=38.27 E-value=2.6e+02 Score=27.95 Aligned_cols=73 Identities=12% Similarity=0.218 Sum_probs=41.3
Q ss_pred EEEeccccCCC--------CCchhHHHHHHHHHHHHHHhCCCCCceEEEeeeecccccccCCCCCcccccCccchhhHHH
Q 018966 122 YIAVGNEAKPG--------DNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLI 193 (348)
Q Consensus 122 ~I~VGNE~l~~--------~~~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa~~~~~~~~~~pPS~~~f~~~~~~~l~~~l 193 (348)
.|.+|=|.... +.+.++..++++.+|+.. .| +.+++..-. ++| |+ -...+...+
T Consensus 250 ~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~--~g----i~i~~~~Iv-----G~P---gE----T~ed~~~tl 311 (414)
T TIGR01579 250 HLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVR--PD----YAFGTDIIV-----GFP---GE----SEEDFQETL 311 (414)
T ss_pred CeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhC--CC----CeeeeeEEE-----ECC---CC----CHHHHHHHH
Confidence 45565554431 236678888888888742 12 556654321 333 11 124567888
Q ss_pred HHHhhcCCCceecccccccc
Q 018966 194 RFLNDNRSPLLVNLYPYFAI 213 (348)
Q Consensus 194 dfL~~~~d~~~vN~yPff~~ 213 (348)
+|+.+. .+-.+++|||--.
T Consensus 312 ~~i~~~-~~~~~~~~~~sp~ 330 (414)
T TIGR01579 312 RMVKEI-EFSHLHIFPYSAR 330 (414)
T ss_pred HHHHhC-CCCEEEeeecCCC
Confidence 988654 3455777776443
No 48
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=37.99 E-value=2.6e+02 Score=28.06 Aligned_cols=133 Identities=13% Similarity=0.216 Sum_probs=72.8
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCceEEEeeeecccccccCCCCCcccccCccchhhHHHHHHhhcCCCceeccccccccc
Q 018966 135 FARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFAIA 214 (348)
Q Consensus 135 ~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfL~~~~d~~~vN~yPff~~~ 214 (348)
+.+++.+.+++.|+. +||+..-..-.-|...+. .-.|+.+.-+-+..+++.|.+.+=-++++++|+....
T Consensus 41 ~~~~v~~~i~~~~~~--------~iP~d~~~iD~~~~~~~~--~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~ 110 (441)
T PF01055_consen 41 NQDEVREVIDRYRSN--------GIPLDVIWIDDDYQDGYG--DFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSND 110 (441)
T ss_dssp SHHHHHHHHHHHHHT--------T--EEEEEE-GGGSBTTB--TT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETT
T ss_pred CHHHHHHHHHHHHHc--------CCCccceecccccccccc--ccccccccccchHHHHHhHhhCCcEEEEEeecccCCC
Confidence 466777777777774 488887653333333221 0112222224578899999999999999999987753
Q ss_pred CCCCCCccccccccCCceeccCCcchhcHHHHHHHHHHHHHHHhCC----CCCcEEEeeeccCCCCC-CCCCCCHHHHHH
Q 018966 215 GNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGG----GSLDIVISESGWPTAGG-DGALTNVDNART 289 (348)
Q Consensus 215 ~~~~i~~~~a~f~~~~~~~~d~~~~y~~~fda~~d~~~~a~~~~g~----~~~~vvItETGWPS~G~-~~~vas~~na~~ 289 (348)
.. .+. .++... ..|+ ++-...+++. ||-.+. .. -+-.+++.
T Consensus 111 ~~-----~~~------------------~~~~~~--------~~~~~v~~~~g~~~~~~~-w~g~~~~~D--ftnp~a~~ 156 (441)
T PF01055_consen 111 SP-----DYE------------------NYDEAK--------EKGYLVKNPDGSPYIGRV-WPGKGGFID--FTNPEARD 156 (441)
T ss_dssp TT-----B-H------------------HHHHHH--------HTT-BEBCTTSSB-EEEE-TTEEEEEB---TTSHHHHH
T ss_pred CC-----cch------------------hhhhHh--------hcCceeecccCCcccccc-cCCcccccC--CCChhHHH
Confidence 11 111 122111 1221 2235677777 984433 23 44456888
Q ss_pred HHHHHHHHHHhcCCCCCCC-CceEEEEEee
Q 018966 290 YNNNLIQHVKRGSPKRPGR-PIETYIFAMF 318 (348)
Q Consensus 290 y~~~~~~~~~~gtp~~p~~-~~~~~~F~~f 318 (348)
++++.++.+. .. +++.+|..+=
T Consensus 157 w~~~~~~~~~-------~~~Gvdg~w~D~~ 179 (441)
T PF01055_consen 157 WWKEQLKELL-------DDYGVDGWWLDFG 179 (441)
T ss_dssp HHHHHHHHHH-------TTST-SEEEEEST
T ss_pred HHHHHHHHHH-------hccCCceEEeecC
Confidence 8877777775 22 7888888763
No 49
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=37.23 E-value=48 Score=33.35 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=33.1
Q ss_pred HHHHhcCCCCeEEeecCCHHHHHHHhcCCcEEEEecCC
Q 018966 53 VALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPN 90 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gikV~lGv~~ 90 (348)
.++|+..|+++||+.+.++.=+.++.+.||+|.=-++.
T Consensus 320 AqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vpl 357 (387)
T PRK09318 320 FQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVPL 357 (387)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEecc
Confidence 58999999999999999998888999999999855543
No 50
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=37.12 E-value=4.5e+02 Score=26.62 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=33.9
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCceEEEeeeecccccccCCCCCcccccCccchhhHHHHHHhhcCCCceecccccc
Q 018966 134 NFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYF 211 (348)
Q Consensus 134 ~~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfL~~~~d~~~vN~yPff 211 (348)
...++.++.++.+|++. . ++.++|..-. .+| |+ -...+.+.++|+.+. .+-.+++|+|-
T Consensus 269 ~~~~~~~~~v~~lr~~~----~--~i~i~~d~Iv-----G~P---gE----t~ed~~~tl~~i~~l-~~~~i~~f~ys 327 (440)
T PRK14334 269 YRREKYLERIAEIREAL----P--DVVLSTDIIV-----GFP---GE----TEEDFQETLSLYDEV-GYDSAYMFIYS 327 (440)
T ss_pred CCHHHHHHHHHHHHHhC----C--CcEEEEeEEE-----ECC---CC----CHHHHHHHHHHHHhc-CCCEeeeeEee
Confidence 36778888888888763 2 2555553321 233 11 124566778887653 34556777753
No 51
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=36.27 E-value=89 Score=26.39 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCCCeEEeecC---------------------C--HHHHHHHhcCCcEEEEecCCc
Q 018966 49 KRDVVALYNQNNIRRMRLYDP---------------------N--IEALEALRGSNIEVMLGLPNE 91 (348)
Q Consensus 49 ~~~v~~ll~~~~~~~VRlY~~---------------------d--~~vl~A~~~~gikV~lGv~~~ 91 (348)
++++++.++..+++.|-+|.- | .++++||++.||+|++=+-..
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 456667777766777776541 2 468899999999999877664
No 52
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=36.04 E-value=43 Score=33.45 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=28.9
Q ss_pred HHHHhcCCCCeEEeecCCHHHHHHHhcCCcEEEE
Q 018966 53 VALYNQNNIRRMRLYDPNIEALEALRGSNIEVML 86 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gikV~l 86 (348)
+++|+..|+++|||. ++|.=+.++.+.||+|.=
T Consensus 331 AqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~ 363 (369)
T PRK12485 331 AQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVE 363 (369)
T ss_pred HHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEE
Confidence 589999999999999 678778888999999873
No 53
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=35.97 E-value=44 Score=33.36 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=30.3
Q ss_pred HHHHhcCCCCeEEeecCCHHHHHHHhcCCcEEEEec
Q 018966 53 VALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGL 88 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gikV~lGv 88 (348)
+++|+..|+++|||.+ +|.=+.++.+.||+|.==+
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEe
Confidence 5899999999999998 8888888999999987433
No 54
>PRK08815 GTP cyclohydrolase; Provisional
Probab=35.76 E-value=52 Score=32.97 Aligned_cols=37 Identities=35% Similarity=0.382 Sum_probs=32.0
Q ss_pred HHHHhcCCCCeEEeecCCHHHHHHHhcCCcEEEEecC
Q 018966 53 VALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLP 89 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gikV~lGv~ 89 (348)
.++|+..|+++||+.+.++.=+.++.+.||+|.=-++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 5899999999999999998888889999999974444
No 55
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=35.67 E-value=49 Score=32.70 Aligned_cols=33 Identities=12% Similarity=0.294 Sum_probs=29.8
Q ss_pred HHHHhcCCCCeEEeecCC-HHHHHHHhcCCcEEE
Q 018966 53 VALYNQNNIRRMRLYDPN-IEALEALRGSNIEVM 85 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d-~~vl~A~~~~gikV~ 85 (348)
.++|+..|+++|||.+.+ +.=..++++.||+|.
T Consensus 301 aqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 301 AQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 589999999999999998 887888999999886
No 56
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=35.47 E-value=62 Score=31.40 Aligned_cols=218 Identities=17% Similarity=0.125 Sum_probs=114.2
Q ss_pred HHHHHHHhcCCcEEE--EecCCcchhHhhh------------hHHHHHHHHHhhccccCCC-ceEEEEEeccccCCCCC-
Q 018966 71 IEALEALRGSNIEVM--LGLPNENLQRIAS------------NQAEANTWVQNNVRNFANN-VKFKYIAVGNEAKPGDN- 134 (348)
Q Consensus 71 ~~vl~A~~~~gikV~--lGv~~~~~~~~a~------------~~~~a~~wv~~~i~~~~~~-~~I~~I~VGNE~l~~~~- 134 (348)
..+++-|++.||+|- .-||....+.+-. -.+...+++.+.+.+| .+ ..|...=|=||++..+.
T Consensus 62 D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~ 140 (320)
T PF00331_consen 62 DAILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGN 140 (320)
T ss_dssp HHHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSS
T ss_pred hHHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCc
Confidence 357777888998776 5567654443211 1234445666555565 33 47999999999997531
Q ss_pred -------------chhHHHHHHHHHHHHHHhCCCCCceEEEeeeecccccccCCCCCcccccCccchhhHHHHHHhhcCC
Q 018966 135 -------------FARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRS 201 (348)
Q Consensus 135 -------------~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfL~~~~d 201 (348)
-++.+..+.+-.|++..+ ++.---+ .+++.. .-...+..++..|.+.+-
T Consensus 141 ~~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~------a~L~~ND-y~~~~~-----------~k~~~~~~lv~~l~~~gv 202 (320)
T PF00331_consen 141 PGGLRDSPWYDALGPDYIADAFRAAREADPN------AKLFYND-YNIESP-----------AKRDAYLNLVKDLKARGV 202 (320)
T ss_dssp SSSBCTSHHHHHHTTCHHHHHHHHHHHHHTT------SEEEEEE-SSTTST-----------HHHHHHHHHHHHHHHTTH
T ss_pred cccccCChhhhcccHhHHHHHHHHHHHhCCC------cEEEecc-ccccch-----------HHHHHHHHHHHHHHhCCC
Confidence 145666777777777653 3433322 222211 002344566776665433
Q ss_pred Cc---eecccccccccCCCCCCccccccccCCceeccCCcchhcHHHHHHHHHHHHHHHhCCCCCcEEEeeeccCCCCCC
Q 018966 202 PL---LVNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESGWPTAGGD 278 (348)
Q Consensus 202 ~~---~vN~yPff~~~~~~~i~~~~a~f~~~~~~~~d~~~~y~~~fda~~d~~~~a~~~~g~~~~~vvItETGWPS~G~~ 278 (348)
|+ ++..| .-... . .+.+...|+++..-+++|.|||.-=......
T Consensus 203 pIdgIG~Q~H-----------------------~~~~~-----~-----~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~ 249 (320)
T PF00331_consen 203 PIDGIGLQSH-----------------------FDAGY-----P-----PEQIWNALDRFASLGLPIHITELDVRDDDNP 249 (320)
T ss_dssp CS-EEEEEEE-----------------------EETTS-----S-----HHHHHHHHHHHHTTTSEEEEEEEEEESSSTT
T ss_pred ccceechhhc-----------------------cCCCC-----C-----HHHHHHHHHHHHHcCCceEEEeeeecCCCCC
Confidence 32 21111 11110 0 2334444555555578999999755544431
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEE-eecC-CCCCCCCCCCeeeeecCCCCceeec
Q 018966 279 GALTNVDNARTYNNNLIQHVKRGSPKRPGRPIETYIFA-MFDE-NGKMGPEIERHWGLFAPNRQPKYQI 345 (348)
Q Consensus 279 ~~vas~~na~~y~~~~~~~~~~gtp~~p~~~~~~~~F~-~fDe-~wK~~~~~E~~wGlf~~~~~~Ky~l 345 (348)
......+.|+.+++.+++.+.+- | +. .+.-+.+- ..|. .|..... -.+=+||+.|.+||...
T Consensus 250 ~~~~~~~~qA~~~~~~~~~~~~~-~--~~-~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~~Kpa~ 313 (320)
T PF00331_consen 250 PDAEEEEAQAEYYRDFLTACFSH-P--PA-AVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQPKPAY 313 (320)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHT-T--HC-TEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSBB-HHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhC-C--cc-CCCEEEEECCCCCCcccCCCC-CCCCeeECCCcCCCHHH
Confidence 10144677889999999988621 1 01 35555555 4443 2654200 13348999999999653
No 57
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=35.14 E-value=84 Score=26.34 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCCeEEeecCCHHHHHHHhcCCcEEEEecC
Q 018966 50 RDVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLP 89 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY~~d~~vl~A~~~~gikV~lGv~ 89 (348)
..+.++|+.+|++.|=+...-+..+..|++.||+|+.+-.
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 4578999999999998877779999999999999999987
No 58
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.37 E-value=4.3e+02 Score=25.43 Aligned_cols=71 Identities=10% Similarity=0.015 Sum_probs=42.4
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCceEEEeeeecccccccCCC--CCccc--ccCccchhhHHHHHHhhcCCCceeccccc
Q 018966 135 FARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPP--SRGSF--KQDYRPILDPLIRFLNDNRSPLLVNLYPY 210 (348)
Q Consensus 135 ~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa~~~~~~~~~~pP--S~~~f--~~~~~~~l~~~ldfL~~~~d~~~vN~yPf 210 (348)
+.+++.+.++++|+. +||+..-.--.-|.....+ ..+.| ++..-|-.+++++-|.+.+=-++++++|+
T Consensus 22 ~~~~v~~~~~~~~~~--------~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~ 93 (317)
T cd06598 22 NWQEVDDTIKTLREK--------DFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPF 93 (317)
T ss_pred CHHHHHHHHHHHHHh--------CCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCc
Confidence 566788888887764 3677664321123211000 11222 22222456789999999999999999998
Q ss_pred ccc
Q 018966 211 FAI 213 (348)
Q Consensus 211 f~~ 213 (348)
...
T Consensus 94 v~~ 96 (317)
T cd06598 94 VLK 96 (317)
T ss_pred ccC
Confidence 764
No 59
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=34.25 E-value=77 Score=31.05 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=46.2
Q ss_pred HHHHHHHhcCC-cEEEEecCCcchhHhhhhHHHHHHHHHhhccccCCCceEEEEEeccccCCCCCchhHHHHHHHHHHHH
Q 018966 71 IEALEALRGSN-IEVMLGLPNENLQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFARYLVPAMRNIQNA 149 (348)
Q Consensus 71 ~~vl~A~~~~g-ikV~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNE~l~~~~~~~~Ll~~i~~v~~a 149 (348)
..||+++.+.| +++ +|=.-. ..| .++.|+.|+...+.+++ ..|.+|+--|.-...+ +-++
T Consensus 175 m~VLkp~idsGkik~-~Ge~~~--d~W--~ps~Aq~~men~lta~~--~~vdaVvA~nDgtagG------------aI~a 235 (341)
T COG4213 175 MKVLKPLIDSGKIKV-VGEQWT--DGW--LPSNAQQIMENLLTANY--NDIDAVVAPNDGTAGG------------AIAA 235 (341)
T ss_pred HHHHHHHhhCCceEE-eeeccc--ccc--CHHHHHHHHHHHHhccc--CceeEEEcCCCchhHH------------HHHH
Confidence 35777776666 555 443211 123 34567777777777763 4488888877743221 2256
Q ss_pred HHhCCCCCceEEEe
Q 018966 150 INGAGLGNQIKVST 163 (348)
Q Consensus 150 L~~~gl~~~v~VtT 163 (348)
|++.||.+++|||=
T Consensus 236 L~a~Gl~g~vpVsG 249 (341)
T COG4213 236 LKAQGLAGKVPVSG 249 (341)
T ss_pred HHhcccCCCCcccC
Confidence 78889998899774
No 60
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=33.91 E-value=58 Score=32.93 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=32.0
Q ss_pred HHHHhcCCCCeEEeecCCHHHHHHHhcCCcEEEEecC
Q 018966 53 VALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLP 89 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gikV~lGv~ 89 (348)
.++|+..|+++||+.+.++.=+.++.+.||+|.=-++
T Consensus 339 aqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 339 AQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 5899999999999999998888889999999974343
No 61
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=33.82 E-value=57 Score=33.52 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=32.1
Q ss_pred HHHHhcCCCCeEEeecCCHHHHHHHhcCCcEEEEecC
Q 018966 53 VALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLP 89 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gikV~lGv~ 89 (348)
.++|+..|+++||+.+.++.=+.++.+.||+|.=-++
T Consensus 373 AqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 373 AQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 5899999999999999999888899999999974443
No 62
>PLN03059 beta-galactosidase; Provisional
Probab=33.80 E-value=7.2e+02 Score=27.82 Aligned_cols=115 Identities=10% Similarity=0.109 Sum_probs=71.6
Q ss_pred HHHHHHhcCCCCeEEeecC-----------------C-HHHHHHHhcCCcEEEEec---------------CCcchhH--
Q 018966 51 DVVALYNQNNIRRMRLYDP-----------------N-IEALEALRGSNIEVMLGL---------------PNENLQR-- 95 (348)
Q Consensus 51 ~v~~ll~~~~~~~VRlY~~-----------------d-~~vl~A~~~~gikV~lGv---------------~~~~~~~-- 95 (348)
+.++.+|..|++.|-+|-. | ..-|+.+++.||.|++=. |.-..+.
T Consensus 63 d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~ 142 (840)
T PLN03059 63 DLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIE 142 (840)
T ss_pred HHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcc
Confidence 4556778899999999953 1 356777889999999843 2211111
Q ss_pred hhh----hHHHHHHHHHhhccc-----c--CCCceEEEEEeccccCCCC-CchhHHHHHHHHHHHHHHhCCCCCceEEEe
Q 018966 96 IAS----NQAEANTWVQNNVRN-----F--ANNVKFKYIAVGNEAKPGD-NFARYLVPAMRNIQNAINGAGLGNQIKVST 163 (348)
Q Consensus 96 ~a~----~~~~a~~wv~~~i~~-----~--~~~~~I~~I~VGNE~l~~~-~~~~~Ll~~i~~v~~aL~~~gl~~~v~VtT 163 (348)
+.+ -.++.++|+..-+.. + -.+..|..+-|=||--.-. +.-..--.||+.+++.+++.|+. ||.-|
T Consensus 143 ~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl~t 220 (840)
T PLN03059 143 FRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTG--VPWVM 220 (840)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCC--cceEE
Confidence 111 123445555443321 1 1245688999999963211 11122367999999999999984 89888
Q ss_pred eeec
Q 018966 164 VIET 167 (348)
Q Consensus 164 a~~~ 167 (348)
.+..
T Consensus 221 ~dg~ 224 (840)
T PLN03059 221 CKQE 224 (840)
T ss_pred CCCC
Confidence 7753
No 63
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=33.58 E-value=88 Score=29.00 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=44.1
Q ss_pred HHHHHHhcCCcEEEEecCCcch---hHhhhhHHHHHHHHHhhccccCCCceEEEEEeccccCCCCCchhHHHHHHHHHHH
Q 018966 72 EALEALRGSNIEVMLGLPNENL---QRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFARYLVPAMRNIQN 148 (348)
Q Consensus 72 ~vl~A~~~~gikV~lGv~~~~~---~~~a~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNE~l~~~~~~~~Ll~~i~~v~~ 148 (348)
..++.+++.|+||++.|..... ..+..+.+..++++ +++..+.....+.+|-+==|-... ..+.....|+++|+
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi-~~lv~~~~~~~~DGIdiDwE~~~~--~~~~~~~fv~~Lr~ 126 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALV-DKIINYVVSYNLDGIDVDLEGPDV--TFGDYLVFIRALYA 126 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHH-HHHHHHHHHhCCCceeEEeeccCc--cHhHHHHHHHHHHH
Confidence 4566777789999988765421 12323333222222 233222211234455554444321 14567788999999
Q ss_pred HHHhCCC
Q 018966 149 AINGAGL 155 (348)
Q Consensus 149 aL~~~gl 155 (348)
+|++.|+
T Consensus 127 ~l~~~~~ 133 (253)
T cd06545 127 ALKKEGK 133 (253)
T ss_pred HHhhcCc
Confidence 9987664
No 64
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=33.24 E-value=80 Score=30.82 Aligned_cols=78 Identities=15% Similarity=0.279 Sum_probs=39.6
Q ss_pred HHHhc--CCcEEEEecC--Ccc---hhHhhhhHHHHHHHHHhhccccCCCceEEEEEeccccCCC-C---CchhHHHHHH
Q 018966 75 EALRG--SNIEVMLGLP--NEN---LQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPG-D---NFARYLVPAM 143 (348)
Q Consensus 75 ~A~~~--~gikV~lGv~--~~~---~~~~a~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNE~l~~-~---~~~~~Ll~~i 143 (348)
.++++ .++||++.|- ..+ ...+..+.+...+.+ +++..+.....+.+|.+==|.... + +..+.++..|
T Consensus 62 ~~lk~~~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi-~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll 140 (362)
T cd02872 62 NALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFI-KSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLL 140 (362)
T ss_pred HHHHhhCCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHH-HHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHH
Confidence 34444 5799997773 321 122333333222222 222222111234455443333221 1 2456789999
Q ss_pred HHHHHHHHhC
Q 018966 144 RNIQNAINGA 153 (348)
Q Consensus 144 ~~v~~aL~~~ 153 (348)
+++|++|++.
T Consensus 141 ~~lr~~l~~~ 150 (362)
T cd02872 141 KELREAFEPE 150 (362)
T ss_pred HHHHHHHHhh
Confidence 9999999887
No 65
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.78 E-value=5.5e+02 Score=26.18 Aligned_cols=130 Identities=12% Similarity=0.125 Sum_probs=64.7
Q ss_pred EEEEEeccccCC--------CCCchhHHHHHHHHHHHHHHhCCCCCceEEEeeeecccccccCCCCCcccccCccchhhH
Q 018966 120 FKYIAVGNEAKP--------GDNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDP 191 (348)
Q Consensus 120 I~~I~VGNE~l~--------~~~~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa~~~~~~~~~~pPS~~~f~~~~~~~l~~ 191 (348)
...+.+|=|-.. ++-+.++..++++.+|++.. .+.++|.. +. +|| |. -...+..
T Consensus 261 ~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p------~i~i~td~----Iv-GfP---gE----T~edf~~ 322 (449)
T PRK14332 261 CPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVP------DVGITTDI----IV-GFP---NE----TEEEFED 322 (449)
T ss_pred cceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCC------CCEEEEEE----Ee-eCC---CC----CHHHHHH
Confidence 456777633332 23378888999999988732 25666532 21 344 11 1245667
Q ss_pred HHHHHhhcCCCceecccccccccCCCCCCccccccccCCceeccCCcchhcHHHHHHHHHHHHHHHhCCCCCcEEEeeec
Q 018966 192 LIRFLNDNRSPLLVNLYPYFAIAGNRQISLDYALFRSQQTVVSDGSLSYRSLFDAILDAVYAALEKTGGGSLDIVISESG 271 (348)
Q Consensus 192 ~ldfL~~~~d~~~vN~yPff~~~~~~~i~~~~a~f~~~~~~~~d~~~~y~~~fda~~d~~~~a~~~~g~~~~~vvItETG 271 (348)
.++|+.+. .+=.+++|+|-..... + .+..+.. .........++..+.+-|..-.....++.-++..+|+|.+.+
T Consensus 323 tl~~v~~l-~~~~~~~f~ys~~~GT---~-a~~~~~~-~v~~~~~~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~~~ 396 (449)
T PRK14332 323 TLAVVREV-QFDMAFMFKYSEREGT---M-AKRKLPD-NVPEEVKSARLTKLVDLQTSISHEQNRARIGRVYSILIENTS 396 (449)
T ss_pred HHHHHHhC-CCCEEEEEEecCCCCC---h-hHHhCcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 78887543 3445677776544211 0 0001110 111111123455555444443333344443466888887654
Q ss_pred cC
Q 018966 272 WP 273 (348)
Q Consensus 272 WP 273 (348)
..
T Consensus 397 ~~ 398 (449)
T PRK14332 397 RK 398 (449)
T ss_pred CC
Confidence 43
No 66
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=32.73 E-value=61 Score=34.13 Aligned_cols=37 Identities=30% Similarity=0.492 Sum_probs=32.9
Q ss_pred HHHHhcCCCCeEEeecCCHHHHHHHhcCCcEEEEecC
Q 018966 53 VALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLP 89 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gikV~lGv~ 89 (348)
+++|+..|+++|||.+.++.=+.++++.||+|.=-++
T Consensus 343 AQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 343 AQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 5899999999999999999989999999999884444
No 67
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.41 E-value=5.9e+02 Score=26.41 Aligned_cols=58 Identities=14% Similarity=0.251 Sum_probs=33.6
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCceEEEeeeecccccccCCCCCcccccCccchhhHHHHHHhhcCCCceeccccc
Q 018966 134 NFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPY 210 (348)
Q Consensus 134 ~~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfL~~~~d~~~vN~yPf 210 (348)
.+.++..++++.+|++. . .+.|++..-. .|| |. -...+...++|+.+.. +-.+++++|
T Consensus 289 ~t~~~~~~~v~~lr~~~-----~-~i~i~~~~Iv-----GfP---gE----T~edf~~Tl~~i~~~~-~~~~~~f~~ 346 (502)
T PRK14326 289 YRSERFLGILEKVRAAM-----P-DAAITTDIIV-----GFP---GE----TEEDFQATLDVVREAR-FSSAFTFQY 346 (502)
T ss_pred CCHHHHHHHHHHHHHhC-----C-CCeEEEEEEE-----ECC---CC----CHHHHHHHHHHHHHcC-CCEEEEEee
Confidence 36778888888888752 2 2667764321 344 11 1345678888886532 333555554
No 68
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.56 E-value=5.8e+02 Score=26.04 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=34.5
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCceEEEeeeecccccccCCCCCcccccCccchhhHHHHHHhhcCCCceecccccc
Q 018966 134 NFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYF 211 (348)
Q Consensus 134 ~~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfL~~~~d~~~vN~yPff 211 (348)
.+.++.++.++.+|+.+ .+ +.++|..-. ++| |+ -...+...++|+.+.. +-.+++++|-
T Consensus 287 ~t~e~~~~~i~~lr~~~-----pg-i~i~~d~Iv-----G~P---gE----T~ed~~~ti~~l~~l~-~~~v~i~~ys 345 (459)
T PRK14338 287 YTVARYRELIARIREAI-----PD-VSLTTDIIV-----GHP---GE----TEEQFQRTYDLLEEIR-FDKVHIAAYS 345 (459)
T ss_pred CCHHHHHHHHHHHHHhC-----CC-CEEEEEEEE-----ECC---CC----CHHHHHHHHHHHHHcC-CCEeEEEecC
Confidence 36778888888888752 22 666654321 233 11 1245667888886543 4446777764
No 69
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=31.07 E-value=1.1e+02 Score=31.07 Aligned_cols=95 Identities=15% Similarity=0.231 Sum_probs=52.0
Q ss_pred HHHHHHHhcCCCCeEEee--cCC-------------HH---HHHHHhcCCc-----EEEEecCCcchhHhhhhHHHHHHH
Q 018966 50 RDVVALYNQNNIRRMRLY--DPN-------------IE---ALEALRGSNI-----EVMLGLPNENLQRIASNQAEANTW 106 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY--~~d-------------~~---vl~A~~~~gi-----kV~lGv~~~~~~~~a~~~~~a~~w 106 (348)
++.+++|+..|+++|-+= +.+ .. +++.+++.|+ .+|.|++.+...++......+.+
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~- 230 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIA- 230 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHh-
Confidence 456777777787766432 111 12 3334445554 47889888766666554443321
Q ss_pred HHhhccccCCCceEEEEE-------------eccccCCCCCchhHHHHHHHHHHHHHHhCCCC
Q 018966 107 VQNNVRNFANNVKFKYIA-------------VGNEAKPGDNFARYLVPAMRNIQNAINGAGLG 156 (348)
Q Consensus 107 v~~~i~~~~~~~~I~~I~-------------VGNE~l~~~~~~~~Ll~~i~~v~~aL~~~gl~ 156 (348)
+ +.+.|..-. +|.+.+ ...++.+..++.+.+.|.++|+.
T Consensus 231 ----l----~p~~i~~y~l~~~p~~~~~~~~~~~~~l---p~~~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 231 ----L----SPDRIAVFGYAHVPSRRKNQRLIDEAAL---PDAEERLRQARAVADRLLAAGYV 282 (453)
T ss_pred ----c----CCCEEEEeccccccchhhHHhcCCccCC---cCHHHHHHHHHHHHHHHHHCCCE
Confidence 1 111221111 122111 13567778888899999999984
No 70
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=30.45 E-value=90 Score=32.14 Aligned_cols=46 Identities=13% Similarity=0.175 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCCeEEeec------C------C-------HHHHHHHhcCCcEEEEecCCcchhH
Q 018966 50 RDVVALYNQNNIRRMRLYD------P------N-------IEALEALRGSNIEVMLGLPNENLQR 95 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY~------~------d-------~~vl~A~~~~gikV~lGv~~~~~~~ 95 (348)
+|+++|+++.|++.-|+=- + + .+++..|.+.||+-++.+..-+++.
T Consensus 56 ~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 56 PVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred HHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 5788999999988877521 1 2 3688999999999999999876543
No 71
>PF14903 WG_beta_rep: WG containing repeat
Probab=29.92 E-value=37 Score=20.94 Aligned_cols=16 Identities=19% Similarity=0.486 Sum_probs=13.1
Q ss_pred eeeecCCCCceeeccc
Q 018966 332 WGLFAPNRQPKYQINF 347 (348)
Q Consensus 332 wGlf~~~~~~Ky~l~~ 347 (348)
||+++.+|+...+..+
T Consensus 1 ~G~id~~G~~vi~~~y 16 (35)
T PF14903_consen 1 WGYIDKNGKIVIPPKY 16 (35)
T ss_pred CEEEeCCCCEEEEccc
Confidence 8999999998876654
No 72
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=28.91 E-value=4e+02 Score=26.09 Aligned_cols=58 Identities=14% Similarity=0.044 Sum_probs=39.2
Q ss_pred cCeeeEEecCCCCCCCCHHHHHHHHhcCCCCeEEeecCCHHHHHHHhcCCcEEEEecCC
Q 018966 32 SAQIGVCYGMKAKILPSKRDVVALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPN 90 (348)
Q Consensus 32 ~~~~Gi~Y~~~~~~~~s~~~v~~ll~~~~~~~VRlY~~d~~vl~A~~~~gikV~lGv~~ 90 (348)
...+|||.-.+.++ +..++.++++...+.+.|=+..-++...+.+++.|++|+.-|+.
T Consensus 55 dkPfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s 112 (320)
T cd04743 55 DKPWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS 112 (320)
T ss_pred CCCeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC
Confidence 45688988655322 32355666666666777766554565578899999999988875
No 73
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=28.05 E-value=1.1e+02 Score=27.86 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=34.7
Q ss_pred HHHHhcCCCCeEEeecCCHHHHHHHhcCCcEEEEecCCc
Q 018966 53 VALYNQNNIRRMRLYDPNIEALEALRGSNIEVMLGLPNE 91 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d~~vl~A~~~~gikV~lGv~~~ 91 (348)
+++|+..|++.||+-+.+|.=..++.+.||+|.--+++.
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 489999999999999999888888999999998888764
No 74
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=27.95 E-value=2.1e+02 Score=22.92 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=37.7
Q ss_pred CCcchhHHHHH-HHHHHHHhhh-hccccCeeeEEecCCCCCCCCHHHHHHHHhcCCCCeEEe
Q 018966 7 SPNTSSTAPVV-LFVVGLLMAT-LHTASAQIGVCYGMKAKILPSKRDVVALYNQNNIRRMRL 66 (348)
Q Consensus 7 ~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~Gi~Y~~~~~~~~s~~~v~~ll~~~~~~~VRl 66 (348)
.|.|=+++.++ |+++++.+.| .-.....+-|+-...+...+...++.+.|+..|+..-++
T Consensus 4 yp~WKyllil~vl~~~~lyALPnlyge~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i 65 (101)
T PF13721_consen 4 YPLWKYLLILVVLLLGALYALPNLYGEDPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSI 65 (101)
T ss_pred cchHHHHHHHHHHHHHHHHHhhhccCCCCcEEEecCCCCccCChHHHHHHHHHHCCCCcceE
Confidence 45666666544 4556665544 113455566766655556777778889999988766544
No 75
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=27.70 E-value=2.5e+02 Score=23.00 Aligned_cols=121 Identities=17% Similarity=0.179 Sum_probs=60.4
Q ss_pred HHHhcCCCCeEEeecCC----------HHHHHHHhcCCcEEEEecCCcchhHhhhhHHHHHHHHHhhccccCCCceEEEE
Q 018966 54 ALYNQNNIRRMRLYDPN----------IEALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNFANNVKFKYI 123 (348)
Q Consensus 54 ~ll~~~~~~~VRlY~~d----------~~vl~A~~~~gikV~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~~~~~~I~~I 123 (348)
+-|.++|.++|-+-+.. ....+++++.|++...-............ .....|+++. .| ++|
T Consensus 2 ~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~----~p----dai 72 (160)
T PF13377_consen 2 DYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSEDAR-EAQLLWLRRL----RP----DAI 72 (160)
T ss_dssp HHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHHHH-HHHHHHHHTC----SS----SEE
T ss_pred hHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchhHH-HHHHHHHhcC----CC----cEE
Confidence 33455688888887732 23556778899875544333222111111 1222355433 12 378
Q ss_pred EeccccCCCCCchhHHHHHHHHHHHHHHhCCC--CCceEEEeeeecccccccCCCCCcccccCccchhhHHHHHH
Q 018966 124 AVGNEAKPGDNFARYLVPAMRNIQNAINGAGL--GNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFL 196 (348)
Q Consensus 124 ~VGNE~l~~~~~~~~Ll~~i~~v~~aL~~~gl--~~~v~VtTa~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfL 196 (348)
+++|+.+. .. +..+|...|+ ++++.|-+-+....... ..|....+..+....-...++.|
T Consensus 73 i~~~~~~a-----~~-------~~~~l~~~g~~vP~di~vv~~~~~~~~~~-~~p~it~i~~~~~~~g~~a~~~l 134 (160)
T PF13377_consen 73 ICSNDRLA-----LG-------VLRALRELGIRVPQDISVVSFDDSPLLEF-FSPPITTIDQDPREMGREAVELL 134 (160)
T ss_dssp EESSHHHH-----HH-------HHHHHHHTTSCTTTTSEEEEESSSGHHHC-SSSTSEEEEE-HHHHHHHHHHHH
T ss_pred EEcCHHHH-----HH-------HHHHHHHcCCcccccccEEEecCcHHHHH-HcCCCceecCCHHHHHHHHHHHH
Confidence 88877642 22 3344455555 46688888665443332 33455555555444334444433
No 76
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.59 E-value=4.5e+02 Score=23.55 Aligned_cols=127 Identities=19% Similarity=0.178 Sum_probs=58.3
Q ss_pred HHHHHHhcCCCCeEEeecCC---------HHHHHHHhcCCcEEEE--ecCCcchhHhhhhHHHHHHHHHhhccccCCCce
Q 018966 51 DVVALYNQNNIRRMRLYDPN---------IEALEALRGSNIEVML--GLPNENLQRIASNQAEANTWVQNNVRNFANNVK 119 (348)
Q Consensus 51 ~v~~ll~~~~~~~VRlY~~d---------~~vl~A~~~~gikV~l--Gv~~~~~~~~a~~~~~a~~wv~~~i~~~~~~~~ 119 (348)
...+.+.++|.++|=+.+.. ....++++..|+++.. ..+.....+.......+.+|++.+ ..
T Consensus 99 ~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~ 171 (265)
T cd01543 99 MAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL-------PK 171 (265)
T ss_pred HHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-------CC
Confidence 34565666677777655432 1234456678877621 111111112222233455555432 13
Q ss_pred EEEEEeccccCCCCCchhHHHHHHHHHHHHHHhCCC--CCceEEEeeeecccccccCCCCCcccccCccchhhHHHHHH
Q 018966 120 FKYIAVGNEAKPGDNFARYLVPAMRNIQNAINGAGL--GNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFL 196 (348)
Q Consensus 120 I~~I~VGNE~l~~~~~~~~Ll~~i~~v~~aL~~~gl--~~~v~VtTa~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfL 196 (348)
+++|.+.|+.+. .-++ ++|++.|+ ++++.|.+-+.......-..|.-.+...+....-...++.|
T Consensus 172 ~~ai~~~~d~~a-----~g~~-------~~l~~~g~~vp~di~vigfd~~~~~~~~~~~~ltti~~~~~~~g~~a~~~l 238 (265)
T cd01543 172 PVGIFACTDARA-----RQLL-------EACRRAGIAVPEEVAVLGVDNDELICELSRPPLSSVEQNAERIGYEAAKLL 238 (265)
T ss_pred CcEEEecChHHH-----HHHH-------HHHHHhCCCCCCceEEEeeCCchhhhccCCCCCceeecCHHHHHHHHHHHH
Confidence 557777776642 1222 33344454 45677777664432222223443444444333333344433
No 77
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=27.38 E-value=4.9e+02 Score=26.21 Aligned_cols=58 Identities=14% Similarity=0.261 Sum_probs=34.5
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCceEEEeeeecccccccCCCCCcccccCccchhhHHHHHHhhcCCCceecccccc
Q 018966 135 FARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYF 211 (348)
Q Consensus 135 ~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfL~~~~d~~~vN~yPff 211 (348)
+.++.+++++.+|+.+ . .+.++|.. +. +|| |. -...+.+.++|+.+. .+-.+|+++|-
T Consensus 263 t~~~~~~~v~~lr~~~-----p-~i~i~~d~----Iv-GfP---gE----Teedf~~Tl~fl~~l-~~~~~~~f~~s 320 (420)
T PRK14339 263 TKEWFLNRAEKLRALV-----P-EVSISTDI----IV-GFP---GE----SDKDFEDTMDVLEKV-RFEQIFSFKYS 320 (420)
T ss_pred CHHHHHHHHHHHHHHC-----C-CCEEEEEE----EE-ECC---CC----CHHHHHHHHHHHHhc-CCCEEeeEecC
Confidence 6778888888888863 2 26677642 22 344 11 124567788887643 33346777643
No 78
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=27.31 E-value=4.7e+02 Score=23.64 Aligned_cols=96 Identities=13% Similarity=0.265 Sum_probs=58.1
Q ss_pred HHHHHHHHhcCCCCeEEee--cCC--HHHHHHHhcCCcEEEEecCCcchhHhhhhHHHHHHHHHhhccccCC-CceEEEE
Q 018966 49 KRDVVALYNQNNIRRMRLY--DPN--IEALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNFAN-NVKFKYI 123 (348)
Q Consensus 49 ~~~v~~ll~~~~~~~VRlY--~~d--~~vl~A~~~~gikV~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~~~-~~~I~~I 123 (348)
|.+.++.++..|...|=+- +++ .++++.+++.|+++-+.++.+.. + ..+.+|.+ -+.|...
T Consensus 69 P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~--~------------~~~~~~l~~vD~VlvM 134 (201)
T PF00834_consen 69 PERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETP--V------------EELEPYLDQVDMVLVM 134 (201)
T ss_dssp GGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS---G------------GGGTTTGCCSSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCC--c------------hHHHHHhhhcCEEEEE
Confidence 4666776666676655433 122 47889999999999888876421 1 11223322 2444444
Q ss_pred EeccccCCCCC-chhHHHHHHHHHHHHHHhCCCCCceEEE
Q 018966 124 AVGNEAKPGDN-FARYLVPAMRNIQNAINGAGLGNQIKVS 162 (348)
Q Consensus 124 ~VGNE~l~~~~-~~~~Ll~~i~~v~~aL~~~gl~~~v~Vt 162 (348)
+| |+=+.|+ .-+..++.|+++|+.+.+.|+. +.+.
T Consensus 135 sV--~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~--~~I~ 170 (201)
T PF00834_consen 135 SV--EPGFGGQKFIPEVLEKIRELRKLIPENGLD--FEIE 170 (201)
T ss_dssp SS---TTTSSB--HGGHHHHHHHHHHHHHHHTCG--SEEE
T ss_pred Ee--cCCCCcccccHHHHHHHHHHHHHHHhcCCc--eEEE
Confidence 44 5544454 6788999999999999998864 4444
No 79
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=26.36 E-value=4e+02 Score=26.69 Aligned_cols=102 Identities=17% Similarity=0.105 Sum_probs=59.5
Q ss_pred HHHHHHHhcCCCCeEEeecC----------C------------HHHHHHHhcCCcEEEEecCCcc------h-----hHh
Q 018966 50 RDVVALYNQNNIRRMRLYDP----------N------------IEALEALRGSNIEVMLGLPNEN------L-----QRI 96 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY~~----------d------------~~vl~A~~~~gikV~lGv~~~~------~-----~~~ 96 (348)
+++...+++.|++.||+.-+ + .++++.+.+.||.|++-+-.-. . ..+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 45667889999999999743 2 2456777889999998744321 1 111
Q ss_pred hhh----HHHHHHHHHhhcc-ccCCCceEEEEEeccccCC--CCCchhHH-HHHHHHHHHHHHhC
Q 018966 97 ASN----QAEANTWVQNNVR-NFANNVKFKYIAVGNEAKP--GDNFARYL-VPAMRNIQNAINGA 153 (348)
Q Consensus 97 a~~----~~~a~~wv~~~i~-~~~~~~~I~~I~VGNE~l~--~~~~~~~L-l~~i~~v~~aL~~~ 153 (348)
..+ ......| ..|. +|.....|.++-+=||+.. ..+....- -++...|++.+...
T Consensus 156 ~~~~~~~~~~~~~w--~~ia~~f~~~~~VIg~~~~NEP~~~~~~~~w~~~~~~A~~~v~~~i~~~ 218 (407)
T COG2730 156 KEENENVEATIDIW--KFIANRFKNYDTVIGFELINEPNGIVTSETWNGGDDEAYDVVRNAILSN 218 (407)
T ss_pred cccchhHHHHHHHH--HHHHHhccCCCceeeeeeecCCcccCCccccccchHHHHHHHHhhhhhc
Confidence 110 1122222 2233 3444577888899999984 12222223 37777776665443
No 80
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=26.33 E-value=7.2e+02 Score=25.94 Aligned_cols=74 Identities=14% Similarity=0.182 Sum_probs=41.7
Q ss_pred EEEEEeccccCC--------CCCchhHHHHHHHHHHHHHHhCCCCCceEEEeeeecccccccCCCCCcccccCccchhhH
Q 018966 120 FKYIAVGNEAKP--------GDNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDP 191 (348)
Q Consensus 120 I~~I~VGNE~l~--------~~~~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa~~~~~~~~~~pPS~~~f~~~~~~~l~~ 191 (348)
+..+.+|=|... ++-+.++.++.++.+|+.+ . .+.++|.. +. +|| |. -...+..
T Consensus 322 ~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~-----p-~i~i~tdi----Iv-GfP---gE----T~edf~~ 383 (509)
T PRK14327 322 VEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAI-----P-NVALTTDI----IV-GFP---NE----TDEQFEE 383 (509)
T ss_pred cceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC-----C-CcEEeeeE----EE-eCC---CC----CHHHHHH
Confidence 456666655443 2236788888888888863 2 26666643 21 344 11 1245567
Q ss_pred HHHHHhhcCCCceeccccccc
Q 018966 192 LIRFLNDNRSPLLVNLYPYFA 212 (348)
Q Consensus 192 ~ldfL~~~~d~~~vN~yPff~ 212 (348)
.++|+.+. .+-.+++|+|--
T Consensus 384 Tl~~v~~l-~~d~~~~f~ysp 403 (509)
T PRK14327 384 TLSLYREV-GFDHAYTFIYSP 403 (509)
T ss_pred HHHHHHHc-CCCeEEEeeeeC
Confidence 78887643 333466666533
No 81
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=25.42 E-value=5e+02 Score=28.87 Aligned_cols=109 Identities=17% Similarity=0.056 Sum_probs=63.1
Q ss_pred eeeEEecCCCCCC-CC--H---HHHHHHHhcCCCCeEEeecC--CHHHHHHHhcCCcEEEEecCCcc-----hhHhhhhH
Q 018966 34 QIGVCYGMKAKIL-PS--K---RDVVALYNQNNIRRMRLYDP--NIEALEALRGSNIEVMLGLPNEN-----LQRIASNQ 100 (348)
Q Consensus 34 ~~Gi~Y~~~~~~~-~s--~---~~v~~ll~~~~~~~VRlY~~--d~~vl~A~~~~gikV~lGv~~~~-----~~~~a~~~ 100 (348)
..|+|.-+...-+ .. . .+.++++|..|++.||+-.- ++.-++-|-..||-|+-=..... .+.+.
T Consensus 302 ~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~~~~~~~~~~~~~~--- 378 (808)
T COG3250 302 IRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAMIETHGMPDDPEWR--- 378 (808)
T ss_pred EeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecchhhcCCCCCcchh---
Confidence 4588877765432 11 2 33567889999999999753 47788888889988875444321 11121
Q ss_pred HHHHHHHHhhccccCCCceEEEEEeccccCCCCCchhHHHHHHHHH
Q 018966 101 AEANTWVQNNVRNFANNVKFKYIAVGNEAKPGDNFARYLVPAMRNI 146 (348)
Q Consensus 101 ~~a~~wv~~~i~~~~~~~~I~~I~VGNE~l~~~~~~~~Ll~~i~~v 146 (348)
+.+..-+...|.+....-.|.-=++|||.-. +.....+...++.+
T Consensus 379 k~~~~~i~~mver~knHPSIiiWs~gNE~~~-g~~~~~~~~~~k~~ 423 (808)
T COG3250 379 KEVSEEVRRMVERDRNHPSIIIWSLGNESGH-GSNHWALYRWFKAS 423 (808)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEeccccccC-ccccHHHHHHHhhc
Confidence 1222224445544322235777899999864 23333444444444
No 82
>PRK07198 hypothetical protein; Validated
Probab=22.79 E-value=76 Score=32.03 Aligned_cols=38 Identities=32% Similarity=0.353 Sum_probs=33.1
Q ss_pred HHHHhcCCCCeE-EeecCCHHHHHHHhcCCcEEEEecCC
Q 018966 53 VALYNQNNIRRM-RLYDPNIEALEALRGSNIEVMLGLPN 90 (348)
Q Consensus 53 ~~ll~~~~~~~V-RlY~~d~~vl~A~~~~gikV~lGv~~ 90 (348)
.++|+..|+++| |+.+.++.=+.++.+.||+|.==++.
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVpl 376 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVPI 376 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEecc
Confidence 489999999999 99999988888999999999866653
No 83
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=22.78 E-value=2e+02 Score=23.36 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCCeEEeec--CC---HHHHHHHhcCCcEEEE
Q 018966 51 DVVALYNQNNIRRMRLYD--PN---IEALEALRGSNIEVML 86 (348)
Q Consensus 51 ~v~~ll~~~~~~~VRlY~--~d---~~vl~A~~~~gikV~l 86 (348)
++.+.++.+|++.|+++= .. ..+|.+++..|+++.-
T Consensus 51 ~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 51 DAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 355677778999999983 32 5799999999988654
No 84
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=22.76 E-value=4.3e+02 Score=25.59 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=13.8
Q ss_pred HHHHHHHhcCCcEEEEecCCc
Q 018966 71 IEALEALRGSNIEVMLGLPNE 91 (348)
Q Consensus 71 ~~vl~A~~~~gikV~lGv~~~ 91 (348)
++.++.+++.|.++++++-..
T Consensus 187 ~ell~~L~~~g~~v~i~l~~~ 207 (321)
T TIGR03822 187 PALIAALKTSGKTVYVALHAN 207 (321)
T ss_pred HHHHHHHHHcCCcEEEEecCC
Confidence 466677777776666666654
No 85
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=22.64 E-value=3.6e+02 Score=23.39 Aligned_cols=25 Identities=4% Similarity=0.072 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHHhcCCCCeEEeecCC
Q 018966 45 ILPSKRDVVALYNQNNIRRMRLYDPN 70 (348)
Q Consensus 45 ~~~s~~~v~~ll~~~~~~~VRlY~~d 70 (348)
+|-|..+.++.|+.+||+ |+.-.+|
T Consensus 35 nCGCC~~w~~~mk~~Gf~-Vk~~~~~ 59 (149)
T COG3019 35 NCGCCDEWAQHMKANGFE-VKVVETD 59 (149)
T ss_pred CCccHHHHHHHHHhCCcE-EEEeecC
Confidence 578999999999999984 4444443
No 86
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.62 E-value=2e+02 Score=26.49 Aligned_cols=83 Identities=18% Similarity=0.310 Sum_probs=51.0
Q ss_pred cCeeeEEecCCCCCCCCHHHHHHHHhcCCCCeEEeecCC-----HHHHHHHhcCCcEEEEecCCcchhHhhhhHHHHHHH
Q 018966 32 SAQIGVCYGMKAKILPSKRDVVALYNQNNIRRMRLYDPN-----IEALEALRGSNIEVMLGLPNENLQRIASNQAEANTW 106 (348)
Q Consensus 32 ~~~~Gi~Y~~~~~~~~s~~~v~~ll~~~~~~~VRlY~~d-----~~vl~A~~~~gikV~lGv~~~~~~~~a~~~~~a~~w 106 (348)
-..+||.+-...-.++. + --.++++++- ..+..+....-+.+++..-.....++ +....|
T Consensus 42 ~sTiGIDFk~kti~l~g----------~-~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sf----eni~~W 106 (207)
T KOG0078|consen 42 ISTIGIDFKIKTIELDG----------K-KIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSF----ENIRNW 106 (207)
T ss_pred cceEEEEEEEEEEEeCC----------e-EEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHH----HHHHHH
Confidence 44577777655433432 1 1356677764 35677766555677777665544444 234557
Q ss_pred HHhhccccCCCceEEEEEeccccCC
Q 018966 107 VQNNVRNFANNVKFKYIAVGNEAKP 131 (348)
Q Consensus 107 v~~~i~~~~~~~~I~~I~VGNE~l~ 131 (348)
+ ++|..+.+ +.+.-+.|||-.=.
T Consensus 107 ~-~~I~e~a~-~~v~~~LvGNK~D~ 129 (207)
T KOG0078|consen 107 I-KNIDEHAS-DDVVKILVGNKCDL 129 (207)
T ss_pred H-HHHHhhCC-CCCcEEEeeccccc
Confidence 6 57777754 47888999998744
No 87
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.95 E-value=5.4e+02 Score=25.96 Aligned_cols=60 Identities=15% Similarity=0.248 Sum_probs=34.9
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCceEEEeeeecccccccCCCCCcccccCccchhhHHHHHHhhcCCCceeccccccc
Q 018966 134 NFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYFA 212 (348)
Q Consensus 134 ~~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfL~~~~d~~~vN~yPff~ 212 (348)
-+.++..++++.+|+.+ . .+.++|..-. .+| |. -...+...++|+.+. .+-.+|+++|--
T Consensus 279 ~~~~~~~~~i~~lr~~~-----~-~i~i~~d~Iv-----G~P---gE----T~ed~~~tl~~i~~l-~~~~~~~~~~sp 338 (439)
T PRK14328 279 YTREYYLELVEKIKSNI-----P-DVAITTDIIV-----GFP---GE----TEEDFEETLDLVKEV-RYDSAFTFIYSK 338 (439)
T ss_pred CCHHHHHHHHHHHHHhC-----C-CCEEEEEEEE-----ECC---CC----CHHHHHHHHHHHHhc-CCCcccceEecC
Confidence 36778888888888763 2 2556553321 344 11 124566788888654 344567776643
No 88
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.89 E-value=5.8e+02 Score=26.19 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=38.1
Q ss_pred CCCchhHHHHHHHHHHHHHHhCCCCCceEEEeeeecccccccCCCCCcccccCccchhhHHHHHHhhcCCCceecccccc
Q 018966 132 GDNFARYLVPAMRNIQNAINGAGLGNQIKVSTVIETGALDESFPPSRGSFKQDYRPILDPLIRFLNDNRSPLLVNLYPYF 211 (348)
Q Consensus 132 ~~~~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa~~~~~~~~~~pPS~~~f~~~~~~~l~~~ldfL~~~~d~~~vN~yPff 211 (348)
|+-+.++.++.++.+|+++.. +-++|.. +. +|| |+- .......++|+ +..-+=.+|++||=
T Consensus 275 R~yt~e~~~~~i~k~R~~~Pd------~~i~tDi----IV-GFP---gET----eedFe~tl~lv-~e~~fd~~~~F~YS 335 (437)
T COG0621 275 RGYTVEEYLEIIEKLRAARPD------IAISTDI----IV-GFP---GET----EEDFEETLDLV-EEVRFDRLHVFKYS 335 (437)
T ss_pred CCcCHHHHHHHHHHHHHhCCC------ceEeccE----EE-ECC---CCC----HHHHHHHHHHH-HHhCCCEEeeeecC
Confidence 334678888889999887643 5555533 22 355 221 23445667766 45667778999874
Q ss_pred c
Q 018966 212 A 212 (348)
Q Consensus 212 ~ 212 (348)
.
T Consensus 336 p 336 (437)
T COG0621 336 P 336 (437)
T ss_pred C
Confidence 4
No 89
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=21.39 E-value=6.2e+02 Score=23.76 Aligned_cols=87 Identities=8% Similarity=0.088 Sum_probs=43.7
Q ss_pred HHHHhcCCCCeEEeecCC------HHHHHHHhcCCcEEEEecCCcchhHhhhhHHHHHHHHHhhccccCCCceEEEEEec
Q 018966 53 VALYNQNNIRRMRLYDPN------IEALEALRGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNFANNVKFKYIAVG 126 (348)
Q Consensus 53 ~~ll~~~~~~~VRlY~~d------~~vl~A~~~~gikV~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~~~~~~I~~I~VG 126 (348)
++.....|++.||++... ...++.+++.|++|.+++..... .+.+...+.++... .+ +.+ .|.+.
T Consensus 88 l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~----~~~~~~~~~~~~~~-~~-g~~---~i~l~ 158 (266)
T cd07944 88 LEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISG----YSDEELLELLELVN-EI-KPD---VFYIV 158 (266)
T ss_pred HHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecC----CCHHHHHHHHHHHH-hC-CCC---EEEEe
Confidence 344455678888887542 23445556788888877665321 12233333233222 22 222 22222
Q ss_pred cccCCCCCchhHHHHHHHHHHHHH
Q 018966 127 NEAKPGDNFARYLVPAMRNIQNAI 150 (348)
Q Consensus 127 NE~l~~~~~~~~Ll~~i~~v~~aL 150 (348)
.-. ..-.|.++-..++.+|+.+
T Consensus 159 DT~--G~~~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 159 DSF--GSMYPEDIKRIISLLRSNL 180 (266)
T ss_pred cCC--CCCCHHHHHHHHHHHHHhc
Confidence 111 0126777777777777654
No 90
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=21.05 E-value=4.5e+02 Score=24.09 Aligned_cols=69 Identities=22% Similarity=0.332 Sum_probs=46.1
Q ss_pred CHHHHHHHHhcCCCCeEEeecCC--------HHHHHHH-hcCCcEEEEecCCcchhHhhhhHHHHHHHHHhhccccCCCc
Q 018966 48 SKRDVVALYNQNNIRRMRLYDPN--------IEALEAL-RGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNFANNV 118 (348)
Q Consensus 48 s~~~v~~ll~~~~~~~VRlY~~d--------~~vl~A~-~~~gikV~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~~~~~ 118 (348)
.|.+.++.++..|++.+=+.+.| ..++..+ +..+++|++|--.... +.++.++..
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGir~~-------edv~~~l~~--------- 99 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIRSL-------ENAQEWLKR--------- 99 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCcCCH-------HHHHHHHHc---------
Confidence 57788899988899999888875 2466555 4568888888765433 223333321
Q ss_pred eEEEEEeccccCCC
Q 018966 119 KFKYIAVGNEAKPG 132 (348)
Q Consensus 119 ~I~~I~VGNE~l~~ 132 (348)
-...|++|+|.+.+
T Consensus 100 Ga~~viigt~~~~~ 113 (233)
T cd04723 100 GASRVIVGTETLPS 113 (233)
T ss_pred CCCeEEEcceeccc
Confidence 13357899999864
No 91
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=20.94 E-value=7.7e+02 Score=23.86 Aligned_cols=111 Identities=15% Similarity=0.155 Sum_probs=64.6
Q ss_pred HHHHHHHhcCCCCeEEeecC-----------C-------HHHHHHHhcCCcEEEEec--CCc------chhHh-------
Q 018966 50 RDVVALYNQNNIRRMRLYDP-----------N-------IEALEALRGSNIEVMLGL--PNE------NLQRI------- 96 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY~~-----------d-------~~vl~A~~~~gikV~lGv--~~~------~~~~~------- 96 (348)
.++.+.+|..|++.|-+|-. | ...|+.|++.||.|++=. |.. .++.+
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~~~~ 106 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRKPDI 106 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGSTTS
T ss_pred HHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhccccc
Confidence 45678888999999999953 1 367888899999988632 211 11111
Q ss_pred --h----hhHHHHHHHHHhh---ccccC--CCceEEEEEeccccCCCCCchhHHHHHHHHHHHHHHhCCCCCceEEEeee
Q 018966 97 --A----SNQAEANTWVQNN---VRNFA--NNVKFKYIAVGNEAKPGDNFARYLVPAMRNIQNAINGAGLGNQIKVSTVI 165 (348)
Q Consensus 97 --a----~~~~~a~~wv~~~---i~~~~--~~~~I~~I~VGNE~l~~~~~~~~Ll~~i~~v~~aL~~~gl~~~v~VtTa~ 165 (348)
. .-.++...|.+.. +.++. .+..|..+-|=||.-.. ..-.++|+.+++..++.|... +...|.+
T Consensus 107 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~~----~~~~~Y~~~l~~~~~~~g~~~-~~~~t~d 181 (319)
T PF01301_consen 107 RLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGSY----GTDRAYMEALKDAYRDWGIDP-VLLYTTD 181 (319)
T ss_dssp -SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGCT----SS-HHHHHHHHHHHHHTT-SS-SBEEEEE
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCCC----cccHhHHHHHHHHHHHhhCcc-ceeeccC
Confidence 1 1123455565432 33332 23569999999998632 234578888999999998864 4444433
No 92
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=20.67 E-value=4e+02 Score=25.40 Aligned_cols=79 Identities=16% Similarity=0.288 Sum_probs=41.4
Q ss_pred HHHHhc--CCcEEEEecCCc----chhHhhhhHHHHHHHHHhhccccCCCceEEEEEeccccCCCC-CchhHHHHHHHHH
Q 018966 74 LEALRG--SNIEVMLGLPNE----NLQRIASNQAEANTWVQNNVRNFANNVKFKYIAVGNEAKPGD-NFARYLVPAMRNI 146 (348)
Q Consensus 74 l~A~~~--~gikV~lGv~~~----~~~~~a~~~~~a~~wv~~~i~~~~~~~~I~~I~VGNE~l~~~-~~~~~Ll~~i~~v 146 (348)
+.++++ .++||++.|-.. ....+..+.+..++ +.++|..+.....+++|.+==|..... .....+...|+++
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~-fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~l 135 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKK-FIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKEL 135 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHH-HHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHH
Confidence 444554 489999977641 12223333222222 222332222222466666644443221 3445788899999
Q ss_pred HHHHHhC
Q 018966 147 QNAINGA 153 (348)
Q Consensus 147 ~~aL~~~ 153 (348)
|+.|.+.
T Consensus 136 r~~l~~~ 142 (334)
T smart00636 136 REALDKE 142 (334)
T ss_pred HHHHHHh
Confidence 9999764
No 93
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=20.42 E-value=2.4e+02 Score=23.33 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCCeEEee--c--------CC---HHHHHHHhcCCcEEEE
Q 018966 50 RDVVALYNQNNIRRMRLY--D--------PN---IEALEALRGSNIEVML 86 (348)
Q Consensus 50 ~~v~~ll~~~~~~~VRlY--~--------~d---~~vl~A~~~~gikV~l 86 (348)
+++.+..+.+|++.|+++ + +- ..+|++++..||++..
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 345577778899988887 3 22 5799999999998764
No 94
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=20.41 E-value=2.6e+02 Score=23.39 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHhcCCCCeEEeecCC-----HHHHHHHhcCCcEEEEecCC
Q 018966 46 LPSKRDVVALYNQNNIRRMRLYDPN-----IEALEALRGSNIEVMLGLPN 90 (348)
Q Consensus 46 ~~s~~~v~~ll~~~~~~~VRlY~~d-----~~vl~A~~~~gikV~lGv~~ 90 (348)
..+++++++..++.|++.|=+=+=+ +.....++..||+++.|+-.
T Consensus 15 ~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 15 KDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred cCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 3478999999999999988775432 35566677899999999986
No 95
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.26 E-value=4.6e+02 Score=24.15 Aligned_cols=70 Identities=17% Similarity=0.309 Sum_probs=46.2
Q ss_pred CCHHHHHHHHhc-CCCCeEEeecCC---------HHHHHHH-hcCCcEEEEecCCcchhHhhhhHHHHHHHHHhhccccC
Q 018966 47 PSKRDVVALYNQ-NNIRRMRLYDPN---------IEALEAL-RGSNIEVMLGLPNENLQRIASNQAEANTWVQNNVRNFA 115 (348)
Q Consensus 47 ~s~~~v~~ll~~-~~~~~VRlY~~d---------~~vl~A~-~~~gikV~lGv~~~~~~~~a~~~~~a~~wv~~~i~~~~ 115 (348)
.+|.+.++.+.. .|++.+=+.|.| .+++..+ +..+++|.+|=-.... +.++.++..
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~-------e~v~~~l~~------ 97 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRTK-------SQIMDYFAA------ 97 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcCCH-------HHHHHHHHC------
Confidence 467778887777 689999999875 2466665 4578999998655333 233333321
Q ss_pred CCceEEEEEeccccCCC
Q 018966 116 NNVKFKYIAVGNEAKPG 132 (348)
Q Consensus 116 ~~~~I~~I~VGNE~l~~ 132 (348)
-+..|++|+|.+.+
T Consensus 98 ---Ga~kvvigt~a~~~ 111 (234)
T PRK13587 98 ---GINYCIVGTKGIQD 111 (234)
T ss_pred ---CCCEEEECchHhcC
Confidence 23347899999853
No 96
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=20.10 E-value=1.8e+02 Score=22.04 Aligned_cols=21 Identities=19% Similarity=0.146 Sum_probs=15.7
Q ss_pred CHHHHHHHHhcCCCCeEEeecC
Q 018966 48 SKRDVVALYNQNNIRRMRLYDP 69 (348)
Q Consensus 48 s~~~v~~ll~~~~~~~VRlY~~ 69 (348)
+.+++.+.++..|+ .||=...
T Consensus 30 ~~~~~~~~l~~~G~-~v~~ve~ 50 (83)
T PF13670_consen 30 SIEQAVAKLEAQGY-QVREVEF 50 (83)
T ss_pred CHHHHHHHHHhcCC-ceEEEEE
Confidence 57888888888887 6665554
Done!