Query 018967
Match_columns 348
No_of_seqs 278 out of 2291
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:34:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0225 Pyruvate dehydrogenase 100.0 9E-100 2E-104 712.9 26.3 329 16-347 11-343 (394)
2 COG1071 AcoA Pyruvate/2-oxoglu 100.0 2.2E-87 4.7E-92 647.9 32.2 292 55-347 20-316 (358)
3 PLN02269 Pyruvate dehydrogenas 100.0 2.1E-81 4.6E-86 614.4 34.8 295 53-347 21-315 (362)
4 CHL00149 odpA pyruvate dehydro 100.0 1.4E-76 3E-81 577.8 34.9 293 53-347 11-313 (341)
5 PLN02374 pyruvate dehydrogenas 100.0 3.7E-75 8.1E-80 580.8 33.9 294 53-348 77-380 (433)
6 TIGR03182 PDH_E1_alph_y pyruva 100.0 2.9E-75 6.3E-80 563.6 31.7 285 61-347 1-288 (315)
7 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 3.4E-73 7.3E-78 544.3 32.0 281 67-348 1-284 (293)
8 PF00676 E1_dh: Dehydrogenase 100.0 3.3E-72 7.2E-77 538.8 27.7 277 70-347 2-281 (300)
9 TIGR03181 PDH_E1_alph_x pyruva 100.0 2.1E-69 4.6E-74 527.8 32.9 281 56-347 18-301 (341)
10 PRK09404 sucA 2-oxoglutarate d 100.0 1.2E-61 2.5E-66 517.2 31.1 303 33-347 155-503 (924)
11 KOG1182 Branched chain alpha-k 100.0 2.4E-62 5.2E-67 456.8 20.0 294 53-347 77-374 (432)
12 TIGR00239 2oxo_dh_E1 2-oxoglut 100.0 9.3E-56 2E-60 470.2 29.9 309 33-347 154-504 (929)
13 cd02016 TPP_E1_OGDC_like Thiam 100.0 3.4E-52 7.3E-57 390.8 18.6 229 77-310 1-264 (265)
14 PRK12270 kgd alpha-ketoglutara 100.0 2E-37 4.4E-42 323.7 27.6 296 44-347 477-808 (1228)
15 PRK12315 1-deoxy-D-xylulose-5- 100.0 3.3E-35 7E-40 305.0 21.6 231 48-297 4-249 (581)
16 COG0567 SucA 2-oxoglutarate de 100.0 9.9E-31 2.2E-35 273.7 23.0 306 33-347 141-486 (906)
17 KOG0450 2-oxoglutarate dehydro 100.0 1.3E-30 2.8E-35 263.4 20.6 297 44-347 232-562 (1017)
18 KOG0451 Predicted 2-oxoglutara 100.0 2E-28 4.2E-33 243.0 16.2 289 44-346 140-479 (913)
19 PRK12754 transketolase; Review 99.9 1E-23 2.2E-28 221.2 25.9 149 164-315 108-274 (663)
20 TIGR00232 tktlase_bact transke 99.9 1.3E-23 2.8E-28 221.1 24.6 149 163-315 103-270 (653)
21 PTZ00089 transketolase; Provis 99.9 1.6E-23 3.4E-28 220.7 23.5 150 164-316 110-277 (661)
22 cd02007 TPP_DXS Thiamine pyrop 99.9 1.6E-23 3.4E-28 189.9 19.4 126 164-295 69-194 (195)
23 TIGR00204 dxs 1-deoxy-D-xylulo 99.9 2.7E-23 5.8E-28 217.4 20.6 230 49-299 3-282 (617)
24 cd02012 TPP_TK Thiamine pyroph 99.9 2.6E-22 5.7E-27 188.8 24.0 135 164-300 99-236 (255)
25 PRK12753 transketolase; Review 99.9 7E-23 1.5E-27 215.6 21.6 133 164-299 108-254 (663)
26 PRK05899 transketolase; Review 99.9 1.2E-22 2.5E-27 213.3 22.9 148 164-315 112-276 (624)
27 COG3959 Transketolase, N-termi 99.9 6.3E-23 1.4E-27 185.5 17.3 213 65-292 8-242 (243)
28 PLN02790 transketolase 99.9 5.4E-22 1.2E-26 208.8 24.9 132 164-298 99-245 (654)
29 PRK05444 1-deoxy-D-xylulose-5- 99.9 2E-22 4.3E-27 209.8 20.7 231 47-299 7-250 (580)
30 PF00456 Transketolase_N: Tran 99.9 1.1E-21 2.4E-26 190.9 17.5 190 151-344 88-310 (332)
31 cd02017 TPP_E1_EcPDC_like Thia 99.9 4.3E-20 9.3E-25 181.2 25.2 164 164-330 112-361 (386)
32 PRK12571 1-deoxy-D-xylulose-5- 99.9 1.1E-20 2.4E-25 198.4 20.0 234 47-299 9-291 (641)
33 PLN02582 1-deoxy-D-xylulose-5- 99.9 2.1E-20 4.5E-25 196.3 20.8 232 47-299 34-328 (677)
34 cd02011 TPP_PK Thiamine pyroph 99.9 6E-21 1.3E-25 175.7 14.5 165 98-279 2-174 (227)
35 PLN02234 1-deoxy-D-xylulose-5- 99.8 1.2E-19 2.6E-24 189.1 22.5 233 47-301 67-331 (641)
36 PRK11864 2-ketoisovalerate fer 99.8 3.1E-19 6.7E-24 170.8 16.1 170 120-295 14-211 (300)
37 TIGR00759 aceE pyruvate dehydr 99.8 1.1E-17 2.3E-22 177.2 27.4 132 164-297 183-394 (885)
38 TIGR03186 AKGDH_not_PDH alpha- 99.8 1.3E-17 2.8E-22 178.2 26.9 133 164-298 183-395 (889)
39 COG0021 TktA Transketolase [Ca 99.8 4.9E-18 1.1E-22 173.2 20.1 132 164-298 110-255 (663)
40 PF13292 DXP_synthase_N: 1-deo 99.8 1.2E-18 2.6E-23 162.4 13.0 218 49-290 3-270 (270)
41 COG1154 Dxs Deoxyxylulose-5-ph 99.8 1.4E-17 3E-22 169.2 19.3 228 48-299 6-287 (627)
42 PRK13012 2-oxoacid dehydrogena 99.8 2.3E-16 4.9E-21 169.2 26.3 132 164-297 197-408 (896)
43 cd02013 TPP_Xsc_like Thiamine 99.7 1.1E-17 2.3E-22 151.7 11.8 119 168-294 51-182 (196)
44 PLN02225 1-deoxy-D-xylulose-5- 99.7 1E-16 2.2E-21 167.9 19.1 224 47-294 79-367 (701)
45 cd02004 TPP_BZL_OCoD_HPCL Thia 99.7 4.1E-17 8.9E-22 144.5 12.5 113 167-290 45-171 (172)
46 KOG0523 Transketolase [Carbohy 99.7 7E-16 1.5E-20 156.1 21.5 132 164-297 112-247 (632)
47 PRK09405 aceE pyruvate dehydro 99.7 4E-15 8.6E-20 159.2 26.2 226 61-296 77-399 (891)
48 cd02002 TPP_BFDC Thiamine pyro 99.7 1E-16 2.2E-21 142.4 11.2 110 170-290 49-178 (178)
49 cd00568 TPP_enzymes Thiamine p 99.7 1.1E-16 2.4E-21 139.8 11.2 114 166-290 42-168 (168)
50 cd02006 TPP_Gcl Thiamine pyrop 99.7 1.8E-16 3.9E-21 144.1 11.8 117 168-292 55-195 (202)
51 cd02008 TPP_IOR_alpha Thiamine 99.7 1.3E-15 2.9E-20 135.8 13.6 116 167-290 48-176 (178)
52 cd02014 TPP_POX Thiamine pyrop 99.7 7.2E-16 1.6E-20 137.5 11.8 115 167-292 48-174 (178)
53 cd02015 TPP_AHAS Thiamine pyro 99.7 6.8E-16 1.5E-20 138.5 11.2 114 168-292 48-175 (186)
54 cd02010 TPP_ALS Thiamine pyrop 99.6 1E-15 2.3E-20 136.6 11.7 115 167-292 45-171 (177)
55 PRK06163 hypothetical protein; 99.6 3E-15 6.6E-20 136.5 14.6 129 169-313 56-190 (202)
56 PRK05261 putative phosphoketol 99.6 3.6E-15 7.8E-20 157.8 17.2 199 90-295 48-287 (785)
57 cd03372 TPP_ComE Thiamine pyro 99.6 4.3E-15 9.4E-20 132.9 14.3 126 169-311 41-171 (179)
58 cd03371 TPP_PpyrDC Thiamine py 99.6 4.8E-15 1E-19 133.7 14.0 130 169-312 47-181 (188)
59 cd02003 TPP_IolD Thiamine pyro 99.6 2.6E-15 5.7E-20 136.9 12.0 116 167-293 45-186 (205)
60 PF02775 TPP_enzyme_C: Thiamin 99.6 1.5E-15 3.3E-20 131.8 9.1 113 167-288 25-153 (153)
61 PRK07524 hypothetical protein; 99.6 4E-15 8.7E-20 153.6 12.1 117 168-295 405-533 (535)
62 TIGR03846 sulfopy_beta sulfopy 99.6 1.6E-14 3.4E-19 129.6 13.9 111 169-292 41-157 (181)
63 cd02005 TPP_PDC_IPDC Thiamine 99.6 8.5E-15 1.8E-19 131.4 12.1 116 167-292 47-175 (183)
64 cd02001 TPP_ComE_PpyrDC Thiami 99.6 5.9E-15 1.3E-19 129.4 10.6 111 169-291 41-155 (157)
65 PRK06154 hypothetical protein; 99.6 1.6E-14 3.5E-19 150.3 12.7 116 168-291 429-555 (565)
66 PRK06725 acetolactate synthase 99.5 2.3E-14 5E-19 149.3 11.7 114 168-292 420-546 (570)
67 cd02009 TPP_SHCHC_synthase Thi 99.5 2E-14 4.4E-19 127.9 9.7 111 168-290 49-174 (175)
68 PRK08327 acetolactate synthase 99.5 2.6E-14 5.7E-19 148.8 11.9 117 168-290 428-566 (569)
69 cd03375 TPP_OGFOR Thiamine pyr 99.5 5.7E-14 1.2E-18 127.1 12.3 113 169-290 50-183 (193)
70 TIGR01504 glyox_carbo_lig glyo 99.5 2.1E-14 4.6E-19 150.0 10.8 117 168-292 416-556 (588)
71 PRK06546 pyruvate dehydrogenas 99.5 4E-14 8.7E-19 147.7 12.6 115 168-293 406-532 (578)
72 PRK07092 benzoylformate decarb 99.5 4.1E-14 9E-19 146.0 12.5 113 167-290 404-529 (530)
73 COG0028 IlvB Thiamine pyrophos 99.5 3.2E-14 6.9E-19 147.4 11.6 116 167-293 405-533 (550)
74 PRK08266 hypothetical protein; 99.5 5.2E-14 1.1E-18 145.6 13.0 118 168-296 400-530 (542)
75 PRK12474 hypothetical protein; 99.5 3.5E-14 7.5E-19 146.3 11.6 113 167-290 386-518 (518)
76 PRK07525 sulfoacetaldehyde ace 99.5 2.3E-14 5E-19 149.7 10.3 119 168-294 433-565 (588)
77 PRK07979 acetolactate synthase 99.5 4E-14 8.6E-19 147.5 11.2 117 168-292 419-549 (574)
78 PRK09107 acetolactate synthase 99.5 4.6E-14 9.9E-19 147.7 11.5 114 168-292 428-555 (595)
79 PRK07586 hypothetical protein; 99.5 6.6E-14 1.4E-18 143.9 11.5 113 167-290 382-514 (514)
80 PRK05858 hypothetical protein; 99.5 8E-14 1.7E-18 144.3 11.7 114 168-292 405-531 (542)
81 cd03376 TPP_PFOR_porB_like Thi 99.5 1.2E-13 2.6E-18 128.8 11.6 123 166-297 58-206 (235)
82 PRK07064 hypothetical protein; 99.5 1.2E-13 2.5E-18 143.0 12.6 117 164-291 399-528 (544)
83 TIGR03457 sulphoacet_xsc sulfo 99.5 1.1E-13 2.3E-18 144.5 12.0 117 168-292 428-558 (579)
84 PRK11269 glyoxylate carboligas 99.5 8E-14 1.7E-18 145.8 10.9 118 167-292 416-557 (591)
85 TIGR02418 acolac_catab acetola 99.5 1.1E-13 2.4E-18 143.1 11.8 114 168-292 406-531 (539)
86 PRK06112 acetolactate synthase 99.5 1.4E-13 3E-18 143.6 12.4 114 168-292 435-561 (578)
87 PRK09124 pyruvate dehydrogenas 99.5 1.6E-13 3.4E-18 143.0 12.8 115 167-292 405-531 (574)
88 PRK06965 acetolactate synthase 99.5 1.1E-13 2.3E-18 144.8 11.3 116 167-292 434-563 (587)
89 PRK07418 acetolactate synthase 99.5 1E-13 2.3E-18 145.6 11.2 114 168-292 432-560 (616)
90 TIGR02720 pyruv_oxi_spxB pyruv 99.5 1.6E-13 3.6E-18 143.0 12.3 116 168-292 406-533 (575)
91 CHL00099 ilvB acetohydroxyacid 99.5 1.4E-13 3E-18 143.9 11.5 114 167-291 427-555 (585)
92 PRK06466 acetolactate synthase 99.5 1.9E-13 4.2E-18 142.4 12.5 116 167-292 420-549 (574)
93 PRK08155 acetolactate synthase 99.5 1.6E-13 3.4E-18 142.7 11.7 114 168-292 417-544 (564)
94 TIGR00118 acolac_lg acetolacta 99.5 1.5E-13 3.3E-18 142.6 11.4 114 168-292 410-537 (558)
95 PRK08979 acetolactate synthase 99.5 1.4E-13 3.1E-18 143.3 11.1 115 168-292 419-547 (572)
96 PRK08527 acetolactate synthase 99.5 2.3E-13 4.9E-18 141.6 12.1 115 168-293 412-540 (563)
97 PRK05778 2-oxoglutarate ferred 99.5 1E-12 2.2E-17 126.5 15.2 133 169-315 69-224 (301)
98 PRK08273 thiamine pyrophosphat 99.5 2.7E-13 5.9E-18 142.0 12.1 117 167-293 412-548 (597)
99 TIGR03393 indolpyr_decarb indo 99.5 1.8E-13 3.8E-18 141.7 10.6 113 168-291 402-527 (539)
100 PRK06457 pyruvate dehydrogenas 99.5 3.1E-13 6.6E-18 140.2 12.2 114 168-292 394-520 (549)
101 PRK08199 thiamine pyrophosphat 99.5 3.2E-13 7E-18 140.2 12.3 115 167-292 412-539 (557)
102 PLN02573 pyruvate decarboxylas 99.5 2.4E-13 5.2E-18 141.9 11.3 116 167-291 425-552 (578)
103 cd02018 TPP_PFOR Thiamine pyro 99.5 2.9E-13 6.2E-18 126.4 10.6 118 168-291 62-203 (237)
104 PRK06456 acetolactate synthase 99.5 2.5E-13 5.4E-18 141.4 11.3 115 167-292 418-546 (572)
105 PRK08611 pyruvate oxidase; Pro 99.5 3.3E-13 7.2E-18 140.7 12.0 113 169-292 407-531 (576)
106 PRK08617 acetolactate synthase 99.5 2.4E-13 5.3E-18 140.9 10.9 114 168-292 412-537 (552)
107 PRK06048 acetolactate synthase 99.5 4.1E-13 8.8E-18 139.6 12.4 113 169-292 413-539 (561)
108 PLN02470 acetolactate synthase 99.5 3.5E-13 7.6E-18 140.8 12.0 114 168-292 424-558 (585)
109 PRK08322 acetolactate synthase 99.5 4.1E-13 8.9E-18 139.0 12.3 114 168-292 404-529 (547)
110 PRK06882 acetolactate synthase 99.5 4.9E-13 1.1E-17 139.3 12.8 116 167-292 418-547 (574)
111 PRK07710 acetolactate synthase 99.4 6.2E-13 1.3E-17 138.5 12.6 114 168-292 422-549 (571)
112 PRK08978 acetolactate synthase 99.4 8E-13 1.7E-17 137.0 11.9 114 168-292 399-526 (548)
113 PRK09628 oorB 2-oxoglutarate-a 99.4 1E-12 2.2E-17 125.2 11.7 112 169-291 67-201 (277)
114 TIGR03297 Ppyr-DeCO2ase phosph 99.4 2.3E-12 5E-17 127.1 14.2 130 169-312 220-354 (361)
115 TIGR03254 oxalate_oxc oxalyl-C 99.4 1.7E-12 3.8E-17 134.7 13.5 113 168-292 415-539 (554)
116 PRK06276 acetolactate synthase 99.4 1.5E-12 3.1E-17 136.2 11.7 114 168-292 417-544 (586)
117 PRK07789 acetolactate synthase 99.4 9.7E-13 2.1E-17 138.2 10.3 115 168-292 445-577 (612)
118 PRK09259 putative oxalyl-CoA d 99.4 2.3E-12 5.1E-17 134.2 12.8 112 168-291 422-546 (569)
119 TIGR03394 indol_phenyl_DC indo 99.4 1.8E-12 3.9E-17 134.2 11.5 113 168-291 401-521 (535)
120 PRK11869 2-oxoacid ferredoxin 99.4 2.7E-12 5.9E-17 122.3 11.5 114 168-290 58-192 (280)
121 PRK11866 2-oxoacid ferredoxin 99.4 4.1E-12 8.8E-17 121.1 12.7 115 167-290 56-191 (279)
122 PRK07282 acetolactate synthase 99.4 1.5E-12 3.1E-17 135.7 10.3 113 168-292 416-542 (566)
123 PRK11867 2-oxoglutarate ferred 99.4 4E-12 8.6E-17 121.8 12.0 115 167-290 66-201 (286)
124 PRK07449 2-succinyl-5-enolpyru 99.4 1.7E-12 3.8E-17 135.0 9.0 110 169-290 424-548 (568)
125 TIGR02177 PorB_KorB 2-oxoacid: 99.3 6.2E-12 1.4E-16 120.3 11.6 113 168-290 51-185 (287)
126 TIGR03336 IOR_alpha indolepyru 99.3 1.6E-11 3.6E-16 128.6 13.0 159 124-290 354-529 (595)
127 PRK11865 pyruvate ferredoxin o 99.2 6.6E-10 1.4E-14 106.8 16.2 176 164-347 63-289 (299)
128 COG3961 Pyruvate decarboxylase 99.1 7.3E-10 1.6E-14 111.5 12.4 159 98-292 363-536 (557)
129 PLN02980 2-oxoglutarate decarb 99.1 4.2E-10 9.2E-15 129.7 10.2 115 166-292 755-890 (1655)
130 KOG1185 Thiamine pyrophosphate 99.0 3.2E-09 6.9E-14 106.0 11.7 122 161-292 420-561 (571)
131 COG3960 Glyoxylate carboligase 98.9 1.5E-09 3.2E-14 104.3 7.0 157 136-300 377-565 (592)
132 KOG4166 Thiamine pyrophosphate 98.8 4.6E-09 9.9E-14 103.5 6.9 116 167-293 521-649 (675)
133 COG2609 AceE Pyruvate dehydrog 98.7 2.1E-06 4.5E-11 89.3 21.1 132 166-299 188-399 (887)
134 KOG1184 Thiamine pyrophosphate 98.4 1E-06 2.3E-11 88.8 9.7 115 167-291 412-539 (561)
135 COG3962 Acetolactate synthase 98.4 1.6E-06 3.4E-11 86.7 9.2 121 168-302 442-583 (617)
136 COG1013 PorB Pyruvate:ferredox 98.2 2.4E-05 5.3E-10 75.4 12.1 115 167-290 67-203 (294)
137 PF09364 XFP_N: XFP N-terminal 98.1 5.1E-06 1.1E-10 81.2 6.5 139 155-298 125-288 (379)
138 cd03377 TPP_PFOR_PNO Thiamine 97.6 0.0017 3.6E-08 64.2 14.8 94 193-291 152-267 (365)
139 COG4231 Indolepyruvate ferredo 97.5 0.00032 6.9E-09 73.0 8.5 112 168-289 426-552 (640)
140 COG3957 Phosphoketolase [Carbo 97.1 0.0024 5.2E-08 67.2 9.0 112 155-271 138-257 (793)
141 COG1165 MenD 2-succinyl-6-hydr 96.9 0.0031 6.7E-08 64.9 8.4 107 174-292 426-547 (566)
142 TIGR02176 pyruv_ox_red pyruvat 96.3 0.06 1.3E-06 61.2 14.3 94 193-291 952-1067(1165)
143 cd06586 TPP_enzyme_PYR Pyrimid 96.0 0.082 1.8E-06 45.0 10.6 103 176-288 48-152 (154)
144 cd07039 TPP_PYR_POX Pyrimidine 95.7 0.18 3.8E-06 44.4 11.3 100 178-288 53-156 (164)
145 cd07035 TPP_PYR_POX_like Pyrim 95.5 0.2 4.3E-06 43.0 10.8 105 175-288 46-153 (155)
146 PRK09193 indolepyruvate ferred 95.5 0.059 1.3E-06 60.7 9.2 113 168-289 479-615 (1165)
147 PRK13030 2-oxoacid ferredoxin 95.4 0.051 1.1E-06 61.3 8.6 112 169-289 467-601 (1159)
148 cd07034 TPP_PYR_PFOR_IOR-alpha 95.4 0.26 5.6E-06 42.6 11.4 87 194-288 67-158 (160)
149 cd07033 TPP_PYR_DXS_TK_like Py 95.1 0.24 5.2E-06 43.1 10.3 101 176-288 52-154 (156)
150 TIGR03845 sulfopyru_alph sulfo 94.2 1.1 2.4E-05 39.2 12.2 104 173-289 44-153 (157)
151 PRK13029 2-oxoacid ferredoxin 93.9 0.23 5E-06 56.2 8.8 115 169-289 494-629 (1186)
152 PF02776 TPP_enzyme_N: Thiamin 93.7 0.37 8E-06 42.4 8.4 106 174-289 50-160 (172)
153 PRK08659 2-oxoglutarate ferred 93.7 0.65 1.4E-05 46.5 10.9 114 174-299 59-178 (376)
154 cd07038 TPP_PYR_PDC_IPDC_like 93.1 1.1 2.4E-05 39.2 10.4 106 174-288 46-160 (162)
155 PRK07119 2-ketoisovalerate fer 92.7 1.2 2.5E-05 44.3 10.9 113 174-298 59-177 (352)
156 cd07037 TPP_PYR_MenD Pyrimidin 92.0 1.1 2.3E-05 39.5 8.7 104 177-289 49-161 (162)
157 PTZ00089 transketolase; Provis 91.9 1.1 2.4E-05 48.2 10.3 110 169-288 408-519 (661)
158 cd07036 TPP_PYR_E1-PDHc-beta_l 90.6 1.8 3.9E-05 38.3 8.8 98 176-287 57-164 (167)
159 PRK08611 pyruvate oxidase; Pro 90.1 2.9 6.3E-05 44.0 11.3 103 177-289 57-162 (576)
160 TIGR00204 dxs 1-deoxy-D-xylulo 89.9 2.7 5.9E-05 44.8 11.0 109 169-289 357-468 (617)
161 PF02779 Transket_pyr: Transke 89.8 4.4 9.6E-05 35.8 10.7 114 169-289 53-171 (178)
162 TIGR03710 OAFO_sf 2-oxoacid:ac 89.7 2.4 5.3E-05 44.6 10.3 110 174-292 248-362 (562)
163 PRK07524 hypothetical protein; 89.7 3.5 7.5E-05 42.9 11.4 106 176-289 52-162 (535)
164 PF01855 POR_N: Pyruvate flavo 89.5 1.7 3.7E-05 40.5 8.1 111 175-298 48-161 (230)
165 PRK09627 oorA 2-oxoglutarate-a 89.4 2.5 5.4E-05 42.3 9.7 115 174-298 58-176 (375)
166 PRK06457 pyruvate dehydrogenas 89.4 3.4 7.3E-05 43.2 11.1 102 178-290 54-159 (549)
167 PRK08978 acetolactate synthase 89.1 3.1 6.6E-05 43.4 10.5 103 177-290 52-159 (548)
168 PRK07979 acetolactate synthase 88.8 3.5 7.7E-05 43.3 10.9 102 178-290 57-163 (574)
169 TIGR03254 oxalate_oxc oxalyl-C 88.8 3.9 8.4E-05 42.7 11.0 105 178-290 55-163 (554)
170 PRK06725 acetolactate synthase 88.6 3.6 7.7E-05 43.3 10.7 103 177-290 66-173 (570)
171 PRK07789 acetolactate synthase 88.2 4.1 8.9E-05 43.2 10.9 103 177-290 83-190 (612)
172 PRK07586 hypothetical protein; 88.2 4 8.7E-05 42.2 10.6 103 177-290 53-160 (514)
173 PRK06466 acetolactate synthase 88.1 4.2 9.1E-05 42.7 10.9 103 178-290 57-163 (574)
174 PRK08266 hypothetical protein; 88.1 4.7 0.0001 42.0 11.1 104 178-290 58-167 (542)
175 PRK12754 transketolase; Review 87.9 3.8 8.2E-05 44.1 10.4 109 169-288 407-518 (663)
176 PRK07064 hypothetical protein; 87.9 4.8 0.0001 41.8 11.0 105 178-290 56-165 (544)
177 PRK06456 acetolactate synthase 87.8 4.2 9.1E-05 42.6 10.6 103 177-290 57-164 (572)
178 PRK07525 sulfoacetaldehyde ace 87.8 5.7 0.00012 41.9 11.6 102 177-289 57-162 (588)
179 TIGR00232 tktlase_bact transke 87.4 4.1 8.9E-05 43.8 10.4 110 169-288 401-512 (653)
180 PRK11269 glyoxylate carboligas 87.3 5.3 0.00011 42.2 11.1 103 177-290 56-164 (591)
181 PRK07710 acetolactate synthase 87.3 4.9 0.00011 42.2 10.8 104 176-290 66-174 (571)
182 PRK07418 acetolactate synthase 87.3 5.5 0.00012 42.3 11.2 102 177-289 74-180 (616)
183 PRK12571 1-deoxy-D-xylulose-5- 87.2 4.7 0.0001 43.3 10.6 110 168-289 365-477 (641)
184 PRK12753 transketolase; Review 87.2 4.5 9.7E-05 43.6 10.5 110 169-289 407-519 (663)
185 TIGR03297 Ppyr-DeCO2ase phosph 87.0 3.9 8.4E-05 40.8 9.2 111 172-289 35-151 (361)
186 PRK08322 acetolactate synthase 86.9 5.4 0.00012 41.5 10.8 104 177-290 52-159 (547)
187 TIGR00118 acolac_lg acetolacta 86.9 6 0.00013 41.3 11.1 102 177-289 53-159 (558)
188 PRK08366 vorA 2-ketoisovalerat 86.9 7.4 0.00016 39.2 11.3 112 174-298 60-173 (390)
189 PLN02234 1-deoxy-D-xylulose-5- 86.8 4.7 0.0001 43.2 10.3 112 169-293 404-517 (641)
190 TIGR03457 sulphoacet_xsc sulfo 86.7 5.4 0.00012 41.9 10.7 101 178-289 54-158 (579)
191 PRK12474 hypothetical protein; 86.6 5.4 0.00012 41.3 10.5 102 178-290 58-164 (518)
192 PRK08155 acetolactate synthase 86.6 5.4 0.00012 41.8 10.6 102 177-289 65-171 (564)
193 PRK09107 acetolactate synthase 86.6 5.1 0.00011 42.4 10.4 104 177-290 63-170 (595)
194 PLN02470 acetolactate synthase 86.5 5.5 0.00012 42.0 10.6 103 177-290 65-172 (585)
195 PRK09259 putative oxalyl-CoA d 86.4 7.2 0.00016 40.9 11.4 103 178-289 62-169 (569)
196 PRK08617 acetolactate synthase 86.2 5.7 0.00012 41.4 10.5 102 178-290 57-163 (552)
197 PRK11892 pyruvate dehydrogenas 85.9 5.3 0.00012 41.2 9.9 107 169-289 194-311 (464)
198 TIGR01504 glyox_carbo_lig glyo 85.9 6.5 0.00014 41.5 10.8 93 191-290 67-163 (588)
199 PRK06276 acetolactate synthase 85.9 7.2 0.00016 41.1 11.1 103 177-290 52-159 (586)
200 PRK05858 hypothetical protein; 85.7 6.7 0.00015 40.9 10.7 103 177-290 56-163 (542)
201 COG0028 IlvB Thiamine pyrophos 85.7 6.8 0.00015 41.3 10.7 101 176-289 52-159 (550)
202 COG0021 TktA Transketolase [Ca 85.6 3 6.6E-05 44.2 7.9 77 209-289 441-519 (663)
203 PRK08199 thiamine pyrophosphat 85.6 7.1 0.00015 40.8 10.9 102 177-289 60-166 (557)
204 TIGR02418 acolac_catab acetola 85.5 8.3 0.00018 40.1 11.2 102 178-290 51-157 (539)
205 TIGR02720 pyruv_oxi_spxB pyruv 85.4 8 0.00017 40.7 11.2 103 178-291 53-159 (575)
206 PRK06112 acetolactate synthase 85.3 7.6 0.00016 40.8 10.9 102 178-290 64-170 (578)
207 PLN02790 transketolase 85.3 7.3 0.00016 41.9 10.9 110 169-288 397-509 (654)
208 PRK06882 acetolactate synthase 85.0 8.3 0.00018 40.4 11.1 103 177-290 56-163 (574)
209 PRK05444 1-deoxy-D-xylulose-5- 84.9 7.7 0.00017 41.0 10.8 108 169-288 326-436 (580)
210 PLN02582 1-deoxy-D-xylulose-5- 84.9 7.5 0.00016 42.0 10.7 109 169-288 403-513 (677)
211 PRK07282 acetolactate synthase 84.5 8.3 0.00018 40.5 10.8 104 176-290 61-169 (566)
212 PLN02225 1-deoxy-D-xylulose-5- 84.2 6.1 0.00013 42.8 9.6 109 168-288 427-538 (701)
213 PLN02683 pyruvate dehydrogenas 84.2 7.2 0.00016 38.7 9.6 106 169-288 79-195 (356)
214 PRK06048 acetolactate synthase 84.1 9.1 0.0002 40.1 10.8 103 176-289 58-165 (561)
215 PRK08367 porA pyruvate ferredo 83.6 13 0.00028 37.5 11.3 112 174-298 61-176 (394)
216 CHL00099 ilvB acetohydroxyacid 83.5 10 0.00022 40.1 10.9 102 178-290 66-172 (585)
217 PRK08979 acetolactate synthase 83.1 9.5 0.00021 40.1 10.5 104 176-290 55-163 (572)
218 PRK05899 transketolase; Review 83.0 7.9 0.00017 41.3 10.0 110 169-288 372-483 (624)
219 TIGR03394 indol_phenyl_DC indo 82.8 8.7 0.00019 40.1 10.0 105 179-291 54-165 (535)
220 PRK08327 acetolactate synthase 82.7 6.8 0.00015 41.1 9.3 104 178-289 65-179 (569)
221 COG3958 Transketolase, C-termi 82.6 11 0.00024 36.5 9.7 109 168-288 53-165 (312)
222 PRK08527 acetolactate synthase 82.5 12 0.00025 39.3 10.9 103 177-290 55-162 (563)
223 PRK08273 thiamine pyrophosphat 81.6 9.9 0.00022 40.2 10.1 102 178-290 57-163 (597)
224 PRK12315 1-deoxy-D-xylulose-5- 81.2 12 0.00025 39.8 10.3 108 169-288 325-434 (581)
225 PRK09124 pyruvate dehydrogenas 80.7 14 0.0003 38.8 10.7 101 178-289 56-160 (574)
226 PRK06154 hypothetical protein; 80.5 10 0.00022 39.9 9.6 91 192-290 82-175 (565)
227 PRK09622 porA pyruvate flavodo 79.8 18 0.00038 36.6 10.7 111 174-297 67-181 (407)
228 PRK06965 acetolactate synthase 79.8 18 0.00039 38.2 11.2 102 178-290 74-180 (587)
229 PRK06546 pyruvate dehydrogenas 79.5 15 0.00033 38.6 10.6 102 178-290 56-161 (578)
230 PRK07092 benzoylformate decarb 77.6 19 0.00041 37.4 10.5 104 178-290 63-170 (530)
231 PF09851 SHOCT: Short C-termin 77.4 5.3 0.00012 25.3 4.0 28 319-347 3-30 (31)
232 PRK09212 pyruvate dehydrogenas 77.3 13 0.00029 36.3 8.8 105 176-293 64-177 (327)
233 PTZ00182 3-methyl-2-oxobutanat 76.9 13 0.00028 36.9 8.6 98 176-287 95-202 (355)
234 COG1154 Dxs Deoxyxylulose-5-ph 76.4 17 0.00036 38.6 9.4 91 191-288 381-473 (627)
235 TIGR00173 menD 2-succinyl-5-en 75.4 10 0.00023 38.3 7.7 47 178-230 53-99 (432)
236 KOG4166 Thiamine pyrophosphate 75.2 18 0.00039 37.0 9.0 94 179-288 145-248 (675)
237 PLN02573 pyruvate decarboxylas 72.4 33 0.00071 36.2 10.8 104 178-290 69-181 (578)
238 COG0674 PorA Pyruvate:ferredox 68.6 50 0.0011 32.9 10.5 109 174-294 58-169 (365)
239 smart00861 Transket_pyr Transk 67.9 68 0.0015 27.6 10.2 107 169-288 54-164 (168)
240 TIGR03336 IOR_alpha indolepyru 67.8 36 0.00078 36.1 9.9 109 175-298 58-169 (595)
241 CHL00144 odpB pyruvate dehydro 64.9 30 0.00065 33.9 8.1 32 253-287 139-171 (327)
242 PLN02980 2-oxoglutarate decarb 58.9 36 0.00079 40.7 8.6 104 177-289 353-465 (1655)
243 COG4032 Predicted thiamine-pyr 58.4 35 0.00076 29.7 6.2 105 174-288 53-161 (172)
244 PF01380 SIS: SIS domain SIS d 55.4 44 0.00096 26.9 6.4 40 190-231 52-91 (131)
245 TIGR03393 indolpyr_decarb indo 51.9 56 0.0012 34.0 7.9 104 177-290 53-165 (539)
246 TIGR01204 bioW 6-carboxyhexano 50.0 57 0.0012 30.6 6.7 72 208-287 150-232 (232)
247 PF05014 Nuc_deoxyrib_tr: Nucl 45.8 43 0.00093 27.0 4.8 39 193-232 63-101 (113)
248 PRK01322 6-carboxyhexanoate--C 41.2 1E+02 0.0022 29.1 7.0 74 208-289 157-241 (242)
249 PRK07449 2-succinyl-5-enolpyru 41.0 1.1E+02 0.0025 31.9 8.2 46 178-229 62-107 (568)
250 cd05014 SIS_Kpsf KpsF-like pro 40.9 1.2E+02 0.0027 24.3 6.9 40 190-231 46-85 (128)
251 PF03744 BioW: 6-carboxyhexano 39.6 90 0.0019 29.4 6.4 72 208-287 157-239 (239)
252 cd01460 vWA_midasin VWA_Midasi 39.5 3.5E+02 0.0075 25.8 11.1 81 194-275 166-256 (266)
253 PRK13683 hypothetical protein; 38.2 55 0.0012 25.9 3.9 33 260-295 21-53 (87)
254 cd08323 CARD_APAF1 Caspase act 36.9 39 0.00084 26.6 3.0 25 321-345 16-40 (86)
255 COG1303 Uncharacterized protei 36.8 72 0.0016 28.3 4.9 41 246-289 24-65 (179)
256 KOG1145 Mitochondrial translat 36.6 2.7E+02 0.0059 29.8 9.7 104 191-296 225-343 (683)
257 PF10415 FumaraseC_C: Fumarase 35.8 42 0.00091 24.1 2.8 20 324-343 28-47 (55)
258 cd05710 SIS_1 A subgroup of th 35.2 89 0.0019 25.5 5.1 40 190-231 46-85 (120)
259 KOG0369 Pyruvate carboxylase [ 34.3 75 0.0016 34.5 5.4 32 193-226 159-190 (1176)
260 COG5381 Uncharacterized protei 33.0 1.2E+02 0.0025 26.7 5.5 62 269-332 70-135 (184)
261 cd08326 CARD_CASP9 Caspase act 32.5 49 0.0011 25.8 3.0 23 322-344 19-41 (84)
262 cd08327 CARD_RAIDD Caspase act 31.4 51 0.0011 26.4 2.9 25 320-344 22-46 (94)
263 cd05017 SIS_PGI_PMI_1 The memb 31.3 1E+02 0.0022 25.0 4.8 38 190-229 42-79 (119)
264 COG3462 Predicted membrane pro 30.5 89 0.0019 25.9 4.2 25 323-348 93-117 (117)
265 cd05008 SIS_GlmS_GlmD_1 SIS (S 30.1 1.2E+02 0.0026 24.3 5.1 39 190-230 45-83 (126)
266 TIGR02176 pyruv_ox_red pyruvat 29.4 4E+02 0.0088 30.9 10.7 85 209-297 89-175 (1165)
267 TIGR03186 AKGDH_not_PDH alpha- 28.8 4E+02 0.0088 30.0 10.2 117 168-288 564-688 (889)
268 TIGR00441 gmhA phosphoheptose 28.7 1.1E+02 0.0024 26.2 4.8 39 190-230 78-116 (154)
269 PF06707 DUF1194: Protein of u 28.5 4.7E+02 0.01 24.0 9.3 78 192-275 116-198 (205)
270 PLN02522 ATP citrate (pro-S)-l 28.4 3.3E+02 0.0071 29.3 9.1 87 190-281 220-320 (608)
271 cd05009 SIS_GlmS_GlmD_2 SIS (S 28.3 1.4E+02 0.0031 24.6 5.4 39 191-230 61-99 (153)
272 PRK13936 phosphoheptose isomer 27.9 1.4E+02 0.003 26.9 5.5 42 188-231 108-149 (197)
273 KOG1615 Phosphoserine phosphat 27.6 1.4E+02 0.003 27.6 5.3 96 95-206 88-186 (227)
274 cd08332 CARD_CASP2 Caspase act 26.8 74 0.0016 25.1 3.1 24 321-344 22-45 (90)
275 PRK00414 gmhA phosphoheptose i 26.3 2E+02 0.0043 25.7 6.3 41 189-231 109-149 (192)
276 PRK13938 phosphoheptose isomer 26.3 1.9E+02 0.0041 26.1 6.1 43 187-231 109-151 (196)
277 PF02639 DUF188: Uncharacteriz 26.0 43 0.00094 28.4 1.7 23 211-233 1-23 (130)
278 cd08330 CARD_ASC_NALP1 Caspase 25.9 80 0.0017 24.4 3.1 26 320-345 16-41 (82)
279 COG1107 Archaea-specific RecJ- 25.6 1.1E+02 0.0023 32.8 4.7 53 208-268 403-458 (715)
280 PRK13761 hypothetical protein; 25.6 1.9E+02 0.0042 27.1 6.0 44 253-314 68-112 (248)
281 cd05007 SIS_Etherase N-acetylm 25.3 1.3E+02 0.0028 28.3 5.1 40 190-231 117-156 (257)
282 PF02006 DUF137: Protein of un 25.0 1.6E+02 0.0035 26.4 5.1 52 254-333 6-58 (178)
283 PF07615 Ykof: YKOF-related Fa 25.0 2.2E+02 0.0047 22.0 5.4 36 257-293 41-77 (81)
284 cd08329 CARD_BIRC2_BIRC3 Caspa 24.5 80 0.0017 25.2 2.9 27 319-345 23-49 (94)
285 PRK13762 tRNA-modifying enzyme 24.4 4.6E+02 0.01 25.5 8.9 37 191-229 130-166 (322)
286 PRK10886 DnaA initiator-associ 24.3 1.5E+02 0.0032 26.8 5.0 41 189-231 107-147 (196)
287 PF02211 NHase_beta: Nitrile h 23.9 1.1E+02 0.0024 28.5 4.1 28 311-344 69-96 (222)
288 COG2515 Acd 1-aminocyclopropan 23.7 3.2E+02 0.007 26.9 7.3 109 191-315 62-175 (323)
289 cd01671 CARD Caspase activatio 23.6 93 0.002 23.1 3.1 26 319-344 13-38 (80)
290 cd08325 CARD_CASP1-like Caspas 23.6 96 0.0021 24.0 3.2 28 318-345 15-42 (83)
291 cd05312 NAD_bind_1_malic_enz N 23.5 2.5E+02 0.0054 27.1 6.6 60 173-232 3-70 (279)
292 cd00617 Tnase_like Tryptophana 23.2 1E+02 0.0022 31.4 4.1 43 74-119 55-97 (431)
293 smart00114 CARD Caspase recrui 23.0 72 0.0016 24.6 2.4 22 323-344 24-45 (88)
294 TIGR00315 cdhB CO dehydrogenas 22.8 1.5E+02 0.0032 26.2 4.6 35 193-227 28-62 (162)
295 PF00619 CARD: Caspase recruit 22.4 1.2E+02 0.0027 22.7 3.6 24 321-344 18-41 (85)
296 PRK11658 UDP-4-amino-4-deoxy-L 22.3 4.7E+02 0.01 25.7 8.6 60 57-119 10-78 (379)
297 PRK08558 adenine phosphoribosy 21.5 6.6E+02 0.014 23.4 8.9 108 176-290 95-211 (238)
298 cd08785 CARD_CARD9-like Caspas 21.1 1E+02 0.0022 24.3 2.8 24 322-345 19-42 (86)
299 PRK06702 O-acetylhomoserine am 20.7 1.7E+02 0.0037 29.9 5.1 45 73-120 62-106 (432)
300 COG0498 ThrC Threonine synthas 20.6 3.8E+02 0.0082 27.3 7.5 69 192-276 127-195 (411)
301 cd01451 vWA_Magnesium_chelatas 20.6 2.5E+02 0.0054 24.3 5.6 34 193-226 99-138 (178)
302 TIGR02803 ExbD_1 TonB system t 20.5 4.2E+02 0.0091 21.6 6.7 47 183-229 75-121 (122)
303 TIGR03127 RuMP_HxlB 6-phospho 20.4 2.1E+02 0.0046 24.7 5.2 40 190-231 71-110 (179)
304 COG0848 ExbD Biopolymer transp 20.2 4.2E+02 0.009 22.6 6.7 46 182-227 86-131 (137)
No 1
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=8.9e-100 Score=712.92 Aligned_cols=329 Identities=64% Similarity=1.057 Sum_probs=310.4
Q ss_pred cccccccccccCCCCCC--CCCcceecCCcccccccccC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 018967 16 ILKPLTNSFLLHRPIST--DTTPLTIETSVPFTSHQCEA-PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRG 92 (348)
Q Consensus 16 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~-~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~g 92 (348)
++.|+..+..+++...+ ...+++++++ ||+.|++|. |++...+|+++++++|++|+++|+||.+++++|++|+|+|
T Consensus 11 ~l~~~~~~~~s~~~~~~r~~~~~~~~~~~-~~~~~~l~~~p~~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRG 89 (394)
T KOG0225|consen 11 LLRPLAQAPPSRTLVNTRLVPSDVTFESS-PFELHKLEEGPSTSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRG 89 (394)
T ss_pred hhchhhhcCccchhhccccCccccccccc-ceeEEEccCCCCceEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhce
Confidence 55555444322222222 3555666665 999999998 9999999999999999999999999999999999999999
Q ss_pred cccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccc
Q 018967 93 FCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIV 172 (348)
Q Consensus 93 f~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~l 172 (348)
|||+|+||||++||+.+++++.|.|+++||+|++.+.+|+++.++|+||+|+.+|+++|+|||||++.+ +|++++|+|
T Consensus 90 FCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~~~v~aEL~Gr~~Gc~kGKGGSMHmy~k--~FyGGnGIV 167 (394)
T KOG0225|consen 90 FCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSVREVLAELMGRQAGCSKGKGGSMHMYAK--NFYGGNGIV 167 (394)
T ss_pred eeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccHHHHHHHHhccccccccCCCcceeeecc--cccCcccee
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 599999999
Q ss_pred cchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHhhcC
Q 018967 173 GAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGD 252 (348)
Q Consensus 173 G~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~g~ 252 (348)
|+|+|+++|+|+|+||++++.++++++|||+.||||+||++|||++|+||+|||||||+|||+|+.++.+.+++|++||.
T Consensus 168 GAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG~ 247 (394)
T KOG0225|consen 168 GAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRGD 247 (394)
T ss_pred ccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEEEccCCCccCcchhhhhcChHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHc
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAH 331 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~ 331 (348)
.|||++|||+|+++|++|.++|++|+++ +||+++|+.|||++|||+|||+++||++||++++|++||||+.++++|++.
T Consensus 248 yiPGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~kRDPI~~lk~~li~~ 327 (394)
T KOG0225|consen 248 YIPGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQKRDPIEGLKKRLIEL 327 (394)
T ss_pred CCCceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecccccCCCCcccchHHHHHHHHhccChHHHHHHHHHHh
Confidence 7999999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 018967 332 DLATEKELKVFIQLVY 347 (348)
Q Consensus 332 g~~t~~el~~i~~~~~ 347 (348)
+++||+|||+|+++++
T Consensus 328 ~late~ELKai~k~ir 343 (394)
T KOG0225|consen 328 GLATEEELKAIDKEIR 343 (394)
T ss_pred cccCHHHHHHHHHHHH
Confidence 9999999999999987
No 2
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=2.2e-87 Score=647.94 Aligned_cols=292 Identities=42% Similarity=0.714 Sum_probs=280.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCC-CEEEcCCcchHHHHhcCCC
Q 018967 55 RSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKK-DSIITAYRDHCTFLGRGGT 133 (348)
Q Consensus 55 ~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~-D~i~~~yR~~~~~l~~G~~ 133 (348)
....+++++++++|+.|+++|.||+++.+++++|+++||||++.||||++||+..+|+++ ||++|+||+|+++|++|+|
T Consensus 20 ~~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~i~~~YR~h~~~l~~G~~ 99 (358)
T COG1071 20 PNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDWIFPTYRDHGHLLARGVP 99 (358)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCEeecccCccccceecCCC
Confidence 345799999999999999999999999999999999999999999999999999999966 9999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCc-EEEEEeCCccccchhHHHH
Q 018967 134 LLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDET-VTFALYGDGAANQGQLFEA 212 (348)
Q Consensus 134 ~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~-~vv~~~GDGa~~~G~~~Ea 212 (348)
+.++|++++|+.+|+|+||+||||+++++.||++.+++||+|+|+|+|+|+|.||++.+. +++|++|||+++||+|||+
T Consensus 100 ~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEa 179 (358)
T COG1071 100 LKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEA 179 (358)
T ss_pred HHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999555 9999999999999999999
Q ss_pred HHHHHHCCCCeEEEEecCCcccccccccccCCchHHhhc--CCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 213 LNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 213 ln~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~g--~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
||||++|+||+||||+||+|+||++...++..+.++.+| ||||+++|||||+.+|++++++|++++|+ +||+|||+.
T Consensus 180 lN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~ 259 (358)
T COG1071 180 LNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAV 259 (358)
T ss_pred HHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 999999999999999999999998877777776777564 89999999999999999999999999999 899999999
Q ss_pred EecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 290 TYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 290 t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
|||+.|||++||++.|||+||+++|+ ++|||.+++++|++.|++|++++++|+++++
T Consensus 260 tYR~~~HS~sDd~~~YRskeE~~~~~-~~DPi~r~~~~L~~~g~~see~~~~i~~e~~ 316 (358)
T COG1071 260 TYRYGGHSTSDDPSKYRSKEEVEEWK-KRDPIVRLRKYLIEAGILSEEELEAIEAEAK 316 (358)
T ss_pred EeecCCCCCCCCccccCCHHHHHHHh-ccChHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999998 5999999999999999999999999999876
No 3
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=2.1e-81 Score=614.39 Aligned_cols=295 Identities=85% Similarity=1.380 Sum_probs=285.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCC
Q 018967 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (348)
Q Consensus 53 ~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~ 132 (348)
|.....+++++++++|+.|+++|.||+++.++|++|+++||+|++.||||++||++.+|+++|+++++||+|+++|++|+
T Consensus 21 ~~~~~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~ 100 (362)
T PLN02269 21 PSRTVETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGG 100 (362)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCC
Confidence 33345889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHH
Q 018967 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEA 212 (348)
Q Consensus 133 ~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ea 212 (348)
++.++|+|++|+.+|+++|||||||+++++.||++.+++||+++|+|+|+|+|.|+++.+.+++|++|||+++||.|||+
T Consensus 101 ~~~~~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ea 180 (362)
T PLN02269 101 TVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEA 180 (362)
T ss_pred CHHHHHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCeEEEEecCCcccccccccccCCchHHhhcCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 213 LNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 213 ln~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
||+|+.|+||+||||+||+|+++++.+++...++++++|+++|+++|||+|+++|+++++.|++++|++||+|||+.|||
T Consensus 181 ln~A~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~~~~p~~~VDG~D~~av~~a~~~A~~~aR~~gP~lIe~~tyR 260 (362)
T PLN02269 181 LNIAALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKEHALSNGPIVLEMDTYR 260 (362)
T ss_pred HHHhhccCcCEEEEEeCCCEeccCchhhhccchHHHHhhcCCCeEEECCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCc
Confidence 99999999999999999999999998888888889999999999999999999999999999999988889999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 293 YHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 293 ~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
++|||++||+..||+++|++.|++++|||.+|+++|+++|++|++++++|+++++
T Consensus 261 ~~gHs~~D~~~~YR~~~E~~~~~~~~DPi~~~~~~L~~~g~~te~e~~~i~~e~~ 315 (362)
T PLN02269 261 YHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIR 315 (362)
T ss_pred CCCcCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999998789999999999867999999999999999999999999999876
No 4
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=1.4e-76 Score=577.81 Aligned_cols=293 Identities=39% Similarity=0.691 Sum_probs=280.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCC
Q 018967 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (348)
Q Consensus 53 ~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~ 132 (348)
+.+...+|+++++++|+.|+++|.||+++.+++++|+++||+|++.||||++||++.+|+++|+++++||+|+++|++|+
T Consensus 11 ~~~~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~ 90 (341)
T CHL00149 11 NSNENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGV 90 (341)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCC
Confidence 44455689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCC-------CCcEEEEEeCCcccc
Q 018967 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSK-------DETVTFALYGDGAAN 205 (348)
Q Consensus 133 ~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~-------~~~~vv~~~GDGa~~ 205 (348)
++.++|+|++|+.+|+++||+||||++.++.++++.+|+||+++|+|+|+|+|.|+++ ++++|||++|||+++
T Consensus 91 ~~~~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~ 170 (341)
T CHL00149 91 PPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTN 170 (341)
T ss_pred CHHHHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhh
Confidence 9999999999999999999999999999999999999999999999999999999987 689999999999999
Q ss_pred chhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHhhc--CCcceEEEcCCCHHHHHHHHHHHHHHhcc-CC
Q 018967 206 QGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NG 282 (348)
Q Consensus 206 ~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~g--~gipg~~VDG~D~~av~~a~~~A~~~ar~-~g 282 (348)
+|++||+||+|++|+||+||||+||+|+++++...+...+++++++ ||+++++|||+|+.+|+++++.|++++|+ ++
T Consensus 171 ~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~g 250 (341)
T CHL00149 171 NGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDG 250 (341)
T ss_pred hcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999877666677888864 99999999999999999999999999999 89
Q ss_pred CEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 283 PMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 283 P~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
|+|||+.|||+.|||++|++ .||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++
T Consensus 251 P~lIev~tyR~~gHs~~D~~-~YR~~~e~~~~~-~~DPi~~~~~~L~~~g~~~~~~~~~i~~e~~ 313 (341)
T CHL00149 251 PTLIEALTYRFRGHSLADPD-ELRSKQEKEAWV-ARDPIKKLKSYIIDNELASQKELNKIQREVK 313 (341)
T ss_pred CEEEEEEEecCCCcCCCCCc-cCCCHHHHHHHh-cCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999999999999987 599999999998 6999999999999999999999999999876
No 5
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=3.7e-75 Score=580.81 Aligned_cols=294 Identities=40% Similarity=0.725 Sum_probs=280.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCC
Q 018967 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (348)
Q Consensus 53 ~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~ 132 (348)
|...+.+++++++++|+.|+++|.||+++.++|++|+++||+|++.||||+++|+..+|+++|+++++||+|+++|++|+
T Consensus 77 ~~~~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~ 156 (433)
T PLN02374 77 SASDLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGV 156 (433)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCC
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCC-------CCcEEEEEeCCcccc
Q 018967 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSK-------DETVTFALYGDGAAN 205 (348)
Q Consensus 133 ~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~-------~~~~vv~~~GDGa~~ 205 (348)
++.++|+|++|+.+|+++|+|||||+++++.|+++.+++||.++|+|+|+|+|.|+++ +++++||++|||+++
T Consensus 157 ~~~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~ 236 (433)
T PLN02374 157 PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCN 236 (433)
T ss_pred CHHHHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccc
Confidence 9999999999999999999999999999999999999999999999999999999985 588999999999999
Q ss_pred chhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CC
Q 018967 206 QGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NG 282 (348)
Q Consensus 206 ~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~g 282 (348)
+|+|||+||+|++|+||+||||+||+|+++++...++..++++++ +||+|+++|||+|+++|++++++|++++|+ ++
T Consensus 237 eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~g 316 (433)
T PLN02374 237 NGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEG 316 (433)
T ss_pred cChHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999988777777788876 499999999999999999999999999999 89
Q ss_pred CEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHC
Q 018967 283 PMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVYA 348 (348)
Q Consensus 283 P~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~~ 348 (348)
|+|||+.|||++||+++|++ .||+++|+++|+ ++|||.+++++|+++|++|++|+++|++++++
T Consensus 317 P~LIe~~tyR~~GHs~~D~~-~YR~~~e~~~~~-~~DPi~~~~~~L~~~gi~te~e~~~i~~~~~~ 380 (433)
T PLN02374 317 PTLVECETYRFRGHSLADPD-ELRDPAEKAHYA-ARDPIAALKKYLIENGLATEAELKAIEKKIDE 380 (433)
T ss_pred CEEEEEEEEecCCcCCCCcc-ccCCHHHHHHHH-cCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999987 599999999998 69999999999999999999999999998863
No 6
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=2.9e-75 Score=563.55 Aligned_cols=285 Identities=52% Similarity=0.902 Sum_probs=275.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCCCHHHHHHH
Q 018967 61 PKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSE 140 (348)
Q Consensus 61 ~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~~~~~ae 140 (348)
+|+++++|+.|+++|.||+++.+++++|+++||+|++.||||+++|++.+|+++||++++||+|+++|++|+++.++|+|
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCC
Q 018967 141 LMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWD 220 (348)
Q Consensus 141 l~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~ 220 (348)
++|+++|+++||+||||+++++.|+++.+|+||+++|+|+|+|+|.|++++++++||++|||++++|.++|+||+|++|+
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~ 160 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWK 160 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCcccccccccccCCchHHhhc--CCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCC
Q 018967 221 LPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHS 297 (348)
Q Consensus 221 LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~g--~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs 297 (348)
||+||||+||+|+++++...+...+++++++ ||+|+++|||+|+++|++++++|++++|+ ++|+|||+.|||++|||
T Consensus 161 lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs 240 (315)
T TIGR03182 161 LPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHS 240 (315)
T ss_pred cCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCC
Confidence 9999999999999999877777778888864 99999999999999999999999999999 89999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 298 MSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 298 ~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
++|++ .||+++|++.|+ ++|||.+|+++|+++|++|++++++|+++++
T Consensus 241 ~~D~~-~Yr~~~e~~~~~-~~dPi~~~~~~L~~~g~~~~~~~~~~~~~~~ 288 (315)
T TIGR03182 241 MSDPA-KYRSKEEVEEWR-KRDPIEKLKARLIEQGIASEEELKEIDKEVR 288 (315)
T ss_pred CCCcc-ccCCHHHHHHHH-hcCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 99988 599999999998 6999999999999999999999999999876
No 7
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=3.4e-73 Score=544.29 Aligned_cols=281 Identities=44% Similarity=0.742 Sum_probs=270.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCCCHHHHHHHHhCCCC
Q 018967 67 FFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKD 146 (348)
Q Consensus 67 ~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~~~~~ael~g~~~ 146 (348)
+|++|+++|.||+++.+++++|++.||+|++.||||+++|+..+|+++|+++++||+|+++|++|+++.++|+|++|+.+
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEE
Q 018967 147 GCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILV 226 (348)
Q Consensus 147 g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~V 226 (348)
++++|++||||++.++.++++.+|+||+++|+|+|+|+|.|+.++++++||++|||++++|.++|+||+|++|+||+|||
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v 160 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcccccccccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCC
Q 018967 227 CENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGS 303 (348)
Q Consensus 227 v~NN~~~i~~~~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~ 303 (348)
|+||+|+++++.......+++.++ ++|+++++|||+|+++|++++++|++++|+ ++|+|||+.|||.+|||++||++
T Consensus 161 v~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gHs~~dd~~ 240 (293)
T cd02000 161 CENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGHSTSDDPS 240 (293)
T ss_pred EeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCCCCCCCcc
Confidence 999999999987766667788875 499999999999999999999999999998 89999999999999999999999
Q ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHC
Q 018967 304 TYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVYA 348 (348)
Q Consensus 304 ~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~~ 348 (348)
.||+++|++.|+ ++|||.+|+++|+++|++|++|+++|++++++
T Consensus 241 ~Yr~~~e~~~~~-~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~ 284 (293)
T cd02000 241 RYRTKEEVEEWK-KRDPILRLRKYLIEAGILTEEELAAIEAEVKA 284 (293)
T ss_pred cCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 999999999997 69999999999999999999999999998863
No 8
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=3.3e-72 Score=538.79 Aligned_cols=277 Identities=39% Similarity=0.630 Sum_probs=249.5
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCCCHHHHHHHHhCCCCCCC
Q 018967 70 QMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCS 149 (348)
Q Consensus 70 ~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~~~~~ael~g~~~g~~ 149 (348)
.|+++|+||+.+..+|..+++.||+|++.||||+++|+..+|+++|+++++||||+++|++|+++.++|+|++|+..+.+
T Consensus 2 ~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~~ 81 (300)
T PF00676_consen 2 RMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGHG 81 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTSTT
T ss_pred chHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCCC
Confidence 46777777777777777777889999999999999999999999999999999999999999999999999999996555
Q ss_pred CCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEec
Q 018967 150 HGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN 229 (348)
Q Consensus 150 ~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~N 229 (348)
.|+. ++|+..++.+|++.++++|.++|+|+|+|+|.|+++.+.+++|++|||+++||.|||+||+|++|+|||||||+|
T Consensus 82 g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveN 160 (300)
T PF00676_consen 82 GGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVEN 160 (300)
T ss_dssp TTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEE
T ss_pred CCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEec
Confidence 5544 455667878899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCC
Q 018967 230 NHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYR 306 (348)
Q Consensus 230 N~~~i~~~~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR 306 (348)
|+|+|+|+...++..++++++ +||+|+++|||+|+++|++++++|++++|+ +||+|||++|||++|||++|+++.||
T Consensus 161 N~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~yr 240 (300)
T PF00676_consen 161 NQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFYR 240 (300)
T ss_dssp ESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGTS
T ss_pred CCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCccccC
Confidence 999999999988888777775 599999999999999999999999999999 99999999999999999999999999
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 307 TRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 307 ~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
+++|++.|++.+|||.+|+++|+++|++|++|+++|+++++
T Consensus 241 ~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~~~~~i~~e~~ 281 (300)
T PF00676_consen 241 SPEEYEEWWKKRDPIKRFRRYLIEEGVLTEEELDAIEAEIK 281 (300)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHTTSS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999998878899999999999999999999999999886
No 9
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=2.1e-69 Score=527.79 Aligned_cols=281 Identities=29% Similarity=0.485 Sum_probs=266.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCCCHH
Q 018967 56 SVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLL 135 (348)
Q Consensus 56 ~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~~ 135 (348)
.+.+|+++++++|++|+++|.||+++.++|++|++ ||+|++.||||++||++.+|+++|+++++||+|+++|++|+++.
T Consensus 18 ~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~h~~~l~~G~~~~ 96 (341)
T TIGR03181 18 APDLSDEELVELYRDMVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGVPLV 96 (341)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCce-ecccCCCChHHHHHHHHHHcCCCCEEEcchhhHHHHHHcCCCHH
Confidence 35689999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHH
Q 018967 136 EVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNI 215 (348)
Q Consensus 136 ~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~ 215 (348)
++|+|++|+.+|.+ ..++.|+++.+++||.++|+|+|+|+|.|+.+++++|||++|||++++|.++|+||+
T Consensus 97 ~~~ae~~g~~~g~~---------~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~t 167 (341)
T TIGR03181 97 EILLYWRGDERGSW---------DPEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNF 167 (341)
T ss_pred HHHHHhcCcCcCCC---------CchhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHH
Confidence 99999999886531 246789999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCCeEEEEecCCcccccccccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 018967 216 AALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (348)
Q Consensus 216 Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R 292 (348)
|++|+||+||||+||+|+++++.......++|.++ +||+++++|||+|+.+|+++++.|++++++ ++|+|||+.|||
T Consensus 168 A~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIev~t~R 247 (341)
T TIGR03181 168 AGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEAVTYR 247 (341)
T ss_pred HhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 99999999999999999998877666667888886 499999999999999999999999999998 899999999999
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 293 YHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 293 ~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
+.||+++|++..||+++|++.|+ ++|||.+|+++|+++|++|++|+++|+++++
T Consensus 248 ~~gH~~~D~~~~YR~~~e~~~~~-~~Dpi~~~~~~L~~~g~~~~~e~~~i~~~~~ 301 (341)
T TIGR03181 248 LGPHTTADDPTRYRTKEEEEEWR-KKDPILRLRKYLERKGLWDEEQEEALEEEAE 301 (341)
T ss_pred CCCCCCCCCCccCCCHHHHHHHh-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 99999999988899999999998 6999999999999999999999999999876
No 10
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=1.2e-61 Score=517.18 Aligned_cols=303 Identities=19% Similarity=0.244 Sum_probs=271.9
Q ss_pred CCCcceecC-------CcccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHH
Q 018967 33 DTTPLTIET-------SVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAI 105 (348)
Q Consensus 33 ~~~~~~~~~-------~~~~~~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~v 105 (348)
.+.++.+|+ ...|+..++|.+.. .+|+++++++|+.|+++|.||+++..+|..+|+. +++|||++++
T Consensus 155 Ycg~ig~E~~hi~~~~er~Wl~~~iE~~~~--~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf----~~eG~Ea~i~ 228 (924)
T PRK09404 155 YCGSIGVEYMHISDPEERRWLQQRIESGRP--SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRF----SLEGGESLIP 228 (924)
T ss_pred hcccHhheeccCCCHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc----cccchhhHHH
Confidence 466666663 12699999996443 9999999999999999999999999999988874 4799999999
Q ss_pred HHHh------cCCCCCEEEc-CCcchHHHHh--cCCCHHHHHHHHhCCC-------CCCCC----------CCCCCcCCC
Q 018967 106 GMEA------GITKKDSIIT-AYRDHCTFLG--RGGTLLEVFSELMGRK-------DGCSH----------GKGGSMHFY 159 (348)
Q Consensus 106 g~~~------~l~~~D~i~~-~yR~~~~~l~--~G~~~~~~~ael~g~~-------~g~~~----------G~ggs~h~~ 159 (348)
|+.. +++++|++++ +||||+++|+ +|+|+.++|+|++|+. +|.++ |++|+||+.
T Consensus 229 gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~ 308 (924)
T PRK09404 229 MLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLS 308 (924)
T ss_pred HHHHHHHHHHhCCCCCEEEecCcCchHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEee
Confidence 9988 6668999999 6999999999 5999999999999997 44444 677788877
Q ss_pred CCCCCccCCCccccchhHHHHHHHHHHHhCCCC------cEEEEEeCCccc-cchhHHHHHHHHHHCCCC---eEEEEec
Q 018967 160 KKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE------TVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCEN 229 (348)
Q Consensus 160 ~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~------~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LP---vI~Vv~N 229 (348)
.. .+.+++|.+.|+|+|.|+|.|+++.+ .++||++||||+ +||.|+|+||||++|+|| +||||+|
T Consensus 309 l~-----~npShleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveN 383 (924)
T PRK09404 309 LA-----FNPSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVIN 383 (924)
T ss_pred cc-----CCccccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEe
Confidence 64 25699999999999999999999888 899999999998 899999999999999998 9999999
Q ss_pred CCcccccccccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCC
Q 018967 230 NHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYR 306 (348)
Q Consensus 230 N~~~i~~~~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR 306 (348)
|+|+++|+...+.+.+..+++ +||+|+++|||+|+++|++|+++|++++|+ +||+|||++|||++||+++|++. ||
T Consensus 384 Nq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~-yr 462 (924)
T PRK09404 384 NQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPS-FT 462 (924)
T ss_pred CCEEEeeCHHHhccchhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCc-CC
Confidence 999999987776655555554 599999999999999999999999999999 99999999999999999999985 99
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 307 TRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 307 ~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
+++|++.|++++|||.+|+++|+++|++|++|+++|+++++
T Consensus 463 ~p~ey~~~~~~~dpi~~~~~~Li~~G~lt~~e~~~i~~~~~ 503 (924)
T PRK09404 463 QPLMYKKIKKHPTTRELYADKLVAEGVITEEEADEMVNEYR 503 (924)
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999877899999999999999999999999999876
No 11
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=2.4e-62 Score=456.77 Aligned_cols=294 Identities=29% Similarity=0.437 Sum_probs=281.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCC
Q 018967 53 PSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGG 132 (348)
Q Consensus 53 ~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~ 132 (348)
++..+.++++-.++||++|++...||.-+-+-.+||+| .||..+.|.||+-+|.+++|.+.|.|++.||.-|..|.||.
T Consensus 77 ~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRi-SFYmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRgf 155 (432)
T KOG1182|consen 77 KSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRI-SFYMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRGF 155 (432)
T ss_pred cccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceE-EEEEeccchhhhhhhhhhhCCcccccccccccCceEEEcCc
Confidence 56779999999999999999999999999888999998 79999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCC-cEEEEEeCCccccchhHHH
Q 018967 133 TLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE-TVTFALYGDGAANQGQLFE 211 (348)
Q Consensus 133 ~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~-~~vv~~~GDGa~~~G~~~E 211 (348)
++++++.+++|+.....+||++++|+++.++||+..++++..|+|.|+|+|+|.|+.+.+ +++||++|||++++|++|.
T Consensus 156 tle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA 235 (432)
T KOG1182|consen 156 TLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHA 235 (432)
T ss_pred cHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhh
Confidence 999999999999999999999999999999999999999999999999999999977655 8999999999999999999
Q ss_pred HHHHHHHCCCCeEEEEecCCcccccccccccCCchHHhhc--CCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 018967 212 ALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (348)
Q Consensus 212 aln~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~g--~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (348)
++|+|+....|+||+|-||+|+|+||...++..+.++.+| ||+..++|||||+++|+.|+++|.+.+-+ ++|+|||+
T Consensus 236 ~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEa 315 (432)
T KOG1182|consen 236 AFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEA 315 (432)
T ss_pred hhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhh
Confidence 9999999999999999999999999999888777776665 99999999999999999999999999988 89999999
Q ss_pred EEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 289 DTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 289 ~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
.|||.+.||+|||.+.||+.+|++.|.+.+.||.+||+++.++|+|+|+...++.++++
T Consensus 316 mtYRvGHHSTSDDSt~YRsadEiq~W~~~~~pisrfr~~i~~~GWw~ee~E~~~rk~~r 374 (432)
T KOG1182|consen 316 MTYRVGHHSTSDDSTAYRSADEIQYWNKSRHPISRFRKYIESNGWWSEEDESELRKNIR 374 (432)
T ss_pred hhhhhccccCCCccccccchhhhhhhhcccCcHHHHHHHHHhcCCcChhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888775
No 12
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=100.00 E-value=9.3e-56 Score=470.20 Aligned_cols=309 Identities=19% Similarity=0.234 Sum_probs=273.8
Q ss_pred CCCcceecCC-------cccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHH
Q 018967 33 DTTPLTIETS-------VPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAI 105 (348)
Q Consensus 33 ~~~~~~~~~~-------~~~~~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~v 105 (348)
.+.++.+|+. ..|+..++|.+. ...+|+++.+++++.|+.+..||.++...|...|.. +.+|.|++.+
T Consensus 154 YCg~ig~E~~hi~~~~~r~Wl~~~iE~~~-~~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KRF----slEG~eslip 228 (929)
T TIGR00239 154 YCGSIGAEYMHITSTEEKRWLQQRIESGE-RAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRF----SLEGLDALVP 228 (929)
T ss_pred hcCcceeeeecCCCHHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCcee----ecccHHHHHH
Confidence 4666666631 269999999765 789999999999999999999999999999865543 3699999998
Q ss_pred HHHhcCC------CCCEEEcC-CcchHHHHh--cCCCHHHHHHHHhCCCCC-CCCCCCCC-cCCCC-----------CCC
Q 018967 106 GMEAGIT------KKDSIITA-YRDHCTFLG--RGGTLLEVFSELMGRKDG-CSHGKGGS-MHFYK-----------KDS 163 (348)
Q Consensus 106 g~~~~l~------~~D~i~~~-yR~~~~~l~--~G~~~~~~~ael~g~~~g-~~~G~ggs-~h~~~-----------~~~ 163 (348)
++...++ .+|+++++ ||||+++|+ +|+|++++|+|+.|+..+ .+.|+|+. +|++. ...
T Consensus 229 ~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~ 308 (929)
T TIGR00239 229 MLKEIIRHSVNSGTRDVVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHL 308 (929)
T ss_pred HHHHHHHHHHHcCCCeEEeccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCccee
Confidence 8766554 68999997 999999999 999999999999998765 34588887 99995 456
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCCC------CcEEEEEeCCccc-cchhHHHHHHHHHHCCCCe---EEEEecCCcc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD------ETVTFALYGDGAA-NQGQLFEALNIAALWDLPA---ILVCENNHYG 233 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~------~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPv---I~Vv~NN~~~ 233 (348)
++.+++++|+++.|+++|.|+|.|+++. +.++||++||||+ +||.|+|+||+|++|++|+ ||||+||+||
T Consensus 309 ~l~~npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg 388 (929)
T TIGR00239 309 ALAFNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIG 388 (929)
T ss_pred eecCCCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE
Confidence 7889999999999999999999998865 5799999999996 8999999999999999997 9999999999
Q ss_pred cccccccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHH
Q 018967 234 MGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDE 310 (348)
Q Consensus 234 i~~~~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e 310 (348)
++|+...+...+.++++ +||+|+++|||+|+++|++|++.|++++|+ +||+|||++|||++|||++|+++.||+ +|
T Consensus 389 ~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~~ 467 (929)
T TIGR00239 389 FTTNPLDARSTPYCSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-LM 467 (929)
T ss_pred EEEcHHHhcCccCHHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-HH
Confidence 99986665555555554 599999999999999999999999999999 999999999999999999999988887 88
Q ss_pred HHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 311 ISGVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 311 ~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
++.|++++||+.+|+++|+++|++|++|+++|+++++
T Consensus 468 ~~~i~~~~dPi~~~~~~Li~~Gv~te~e~~~i~~~~~ 504 (929)
T TIGR00239 468 YQKIKKHPTPRKVYADKLVSEGVATEEDVTEMVNLYR 504 (929)
T ss_pred HHHHHhCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 8888877999999999999999999999999999876
No 13
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=3.4e-52 Score=390.77 Aligned_cols=229 Identities=23% Similarity=0.286 Sum_probs=206.4
Q ss_pred HHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCC------CCEEEcC-CcchHHHHh--cCCCHHHHHHHHhCCCC-
Q 018967 77 MEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITK------KDSIITA-YRDHCTFLG--RGGTLLEVFSELMGRKD- 146 (348)
Q Consensus 77 ~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~------~D~i~~~-yR~~~~~l~--~G~~~~~~~ael~g~~~- 146 (348)
||+++...|...|. + .++|+|++++++...+++ +|+++++ ||||+++|+ +|+|++++|+|++|+.+
T Consensus 1 ~e~f~~~~f~~~kr---f-s~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~ 76 (265)
T cd02016 1 FEQFLATKFPGQKR---F-GLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEF 76 (265)
T ss_pred ChhhHHHhcCCCeE---E-EecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCC
Confidence 68888888875442 2 289999999999999987 7999997 999999999 99999999999999877
Q ss_pred --CCCCCCCCCcCCCCCC-----------CCccCCCccccchhHHHHHHHHHHHhCC-----CCcEEEEEeCCccc-cch
Q 018967 147 --GCSHGKGGSMHFYKKD-----------SGFYGGHGIVGAQIPLGCGLAFAQKYSK-----DETVTFALYGDGAA-NQG 207 (348)
Q Consensus 147 --g~~~G~ggs~h~~~~~-----------~~~~~~~g~lG~~lp~A~G~A~A~k~~~-----~~~~vv~~~GDGa~-~~G 207 (348)
+.+.|++.++|++.+. .++.+++++||+++|+|+|+|+|.|+++ .+.++||++||||+ +||
T Consensus 77 ~~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG 156 (265)
T cd02016 77 PEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQG 156 (265)
T ss_pred CCCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCC
Confidence 5556777899998765 5678999999999999999999999998 47899999999995 799
Q ss_pred hHHHHHHHHHHCCCC---eEEEEecCCcccccccccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-C
Q 018967 208 QLFEALNIAALWDLP---AILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-N 281 (348)
Q Consensus 208 ~~~Ealn~Aa~~~LP---vI~Vv~NN~~~i~~~~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~ 281 (348)
.|+|+||+|++|++| +||||+||+|+++|+.+++...+.++++ +|++|+++|||+|+++|++++++|++++|+ +
T Consensus 157 ~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~g~ 236 (265)
T cd02016 157 VVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQKFK 236 (265)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999 9999999999999998877777667765 499999999999999999999999999999 9
Q ss_pred CCEEEEEEEecCCCCCCCCCCCCCCCHHH
Q 018967 282 GPMILEMDTYRYHGHSMSDPGSTYRTRDE 310 (348)
Q Consensus 282 gP~lIe~~t~R~~GHs~~D~~~~YR~~~e 310 (348)
||+|||++|||++||+++|+++ |++|.+
T Consensus 237 gp~lIe~~tYR~~GHse~D~p~-~t~p~m 264 (265)
T cd02016 237 KDVVIDLVCYRRHGHNELDEPS-FTQPLM 264 (265)
T ss_pred CCEEEEEEEecCCCCCCcCCcc-ccCCCc
Confidence 9999999999999999999985 887654
No 14
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=2e-37 Score=323.67 Aligned_cols=296 Identities=20% Similarity=0.243 Sum_probs=250.5
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC------CCCEE
Q 018967 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT------KKDSI 117 (348)
Q Consensus 44 ~~~~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~------~~D~i 117 (348)
.|.+.++|.| ....++++.+.+++.+..+..||.++...|..+|. | +.+|-|.+...+...|. -+.++
T Consensus 477 ~W~Q~rvE~~--~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkR--F--slEG~Es~iplld~~~~~aa~~~l~evv 550 (1228)
T PRK12270 477 RWLQERVERP--HEKPTREEQKRILSKLNAAEAFETFLQTKYVGQKR--F--SLEGGESLIPLLDAVLDQAAEHGLDEVV 550 (1228)
T ss_pred HHHHHHhhCC--CCCCCHHHHHHHHHHhhhHHHHHHHHhhhccccee--e--eecchhhHHHHHHHHHHHHHhcCCceEE
Confidence 6999999965 56788999999999999999999999999985443 2 46899998887766665 35678
Q ss_pred Ec-CCcchHHHHh--cCCCHHHHHHHHhCCCCCC-CCCCCC-CcCCCCCC-----------CCccCCCccccchhHHHHH
Q 018967 118 IT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGC-SHGKGG-SMHFYKKD-----------SGFYGGHGIVGAQIPLGCG 181 (348)
Q Consensus 118 ~~-~yR~~~~~l~--~G~~~~~~~ael~g~~~g~-~~G~gg-s~h~~~~~-----------~~~~~~~g~lG~~lp~A~G 181 (348)
|+ .|||+.++|+ .|++..++|.|+-|+-... ..|.|. ..|++... ..+..+.++|.+.-|+.-|
T Consensus 551 igm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVleG 630 (1228)
T PRK12270 551 IGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLEG 630 (1228)
T ss_pred ecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhhh
Confidence 88 7999999999 6999999999999986543 334433 36776421 1345678999999999999
Q ss_pred HHHHHHhCC------CCcEEEEEeCCccc-cchhHHHHHHHHHHCCCC---eEEEEecCCccccccccc--cc-CCchHH
Q 018967 182 LAFAQKYSK------DETVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCENNHYGMGTAEWR--AA-KSPSYY 248 (348)
Q Consensus 182 ~A~A~k~~~------~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LP---vI~Vv~NN~~~i~~~~~~--~~-~~~~~~ 248 (348)
++.|.|..- -..+.|+++||+++ +||+++|+||+|.+|++| +||||+||++|++|+... ++ -.+|++
T Consensus 631 ivRakQd~l~~g~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~a 710 (1228)
T PRK12270 631 IVRAKQDRLDKGEEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVA 710 (1228)
T ss_pred hhhhhhhhhcccccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhhHHHH
Confidence 999987542 24589999999996 899999999999999999 899999999999997653 33 234555
Q ss_pred hhcCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHH
Q 018967 249 KRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKL 327 (348)
Q Consensus 249 ~~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~ 327 (348)
+ ++++|+++|||+||++|.++.+.|++|+++ ++|+|||+.|||++||++.|||+ +.+|.+|..+...+...+.|++.
T Consensus 711 k-~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPS-mtqP~mY~~i~~~~svrk~yte~ 788 (1228)
T PRK12270 711 K-MIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPS-MTQPLMYDLIDAKRSVRKLYTEA 788 (1228)
T ss_pred h-hcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcc-cCCchhhhhhhhcchHHHHHHHH
Confidence 4 799999999999999999999999999999 99999999999999999999996 78888888887667778899999
Q ss_pred HHHcCCCCHHHHHHHHHHHH
Q 018967 328 ILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 328 L~~~g~~t~~el~~i~~~~~ 347 (348)
|+.+|.+|++|++++.++++
T Consensus 789 Ligrgdit~ee~e~~l~dy~ 808 (1228)
T PRK12270 789 LIGRGDITVEEAEQALRDYQ 808 (1228)
T ss_pred HhhcCCCCHHHHHHHHHHHH
Confidence 99999999999999887664
No 15
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=100.00 E-value=3.3e-35 Score=305.03 Aligned_cols=231 Identities=20% Similarity=0.207 Sum_probs=190.2
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCEEE--cCCcch
Q 018967 48 HQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSII--TAYRDH 124 (348)
Q Consensus 48 ~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~-~~D~i~--~~yR~~ 124 (348)
..++.|.+...|+.++|.++-. .+|.+- ++..+++.|++|++.|+-.+.+++...++ |+|+++ ++||+|
T Consensus 4 ~~~~~p~d~~~l~~~~l~~l~~---~ir~~~-----~~~~~~~~Gh~~~~lg~vel~~al~~~f~~~~D~ii~d~ghr~~ 75 (581)
T PRK12315 4 EKINSPADLKKLSLDELEQLAS---EIRTAL-----LEKDSAHGGHVGPNLGVVELTIALHYVFNSPKDKIVWDVSHQSY 75 (581)
T ss_pred hhcCCHHHHhhCCHHHHHHHHH---HHHHHH-----HHHHHhcCCCcCcchhHHHHHHHHHhhcCCCCCcEEEecCCchH
Confidence 3455677888888888877654 455543 33456778999999999555444433333 899999 899999
Q ss_pred HHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccc
Q 018967 125 CTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA 204 (348)
Q Consensus 125 ~~~l~~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~ 204 (348)
+|.|++|.++..++.+++|+.+|++++++ |+|.. ...|++|+++|+|+|+|+|.|+++.+.++||++|||++
T Consensus 76 ~~~l~~G~~~~~~~~~~~g~~~G~~~~~~-s~~~~-------~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~ 147 (581)
T PRK12315 76 PHKMLTGRKEAFLDPDHYDDVTGYTNPEE-SEHDF-------FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSL 147 (581)
T ss_pred HHHHHcCCccchhhHHHcCCCCCCCCCCC-CCCCC-------cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhh
Confidence 99999999999999999999999999887 44432 25689999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHCCCCeEEEEecCCccccccccc---------ccCCchHHh--hcCCcceEEE-cCCCHHHHHHHHH
Q 018967 205 NQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWR---------AAKSPSYYK--RGDYVPGLKV-DGMDALAVKQACK 272 (348)
Q Consensus 205 ~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~---------~~~~~~~~~--~g~gipg~~V-DG~D~~av~~a~~ 272 (348)
++|.+|||||+|+.|++|+||||+||+|+++++... .....+... .+||++++.| ||||+.++.++++
T Consensus 148 ~eG~~~EAln~A~~~k~~li~Ii~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~ 227 (581)
T PRK12315 148 SGGLALEGLNNAAELKSNLIIIVNDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFK 227 (581)
T ss_pred hcchHHHHHHHHHhhCCCEEEEEECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHH
Confidence 999999999999999999999999999999876642 112222222 4689999998 9999999999999
Q ss_pred HHHHHhccCCCEEEEEEEecCCCCC
Q 018967 273 FAKEHALKNGPMILEMDTYRYHGHS 297 (348)
Q Consensus 273 ~A~~~ar~~gP~lIe~~t~R~~GHs 297 (348)
+|++ .+||++||++|+|+.|..
T Consensus 228 ~a~~---~~gP~~i~~~T~kG~G~~ 249 (581)
T PRK12315 228 EVKD---IDHPIVLHIHTLKGKGYQ 249 (581)
T ss_pred HHHh---CCCCEEEEEEeecCCCCC
Confidence 8764 289999999999999975
No 16
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=99.97 E-value=9.9e-31 Score=273.73 Aligned_cols=306 Identities=18% Similarity=0.180 Sum_probs=254.0
Q ss_pred CCCcceecC-------CcccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHH
Q 018967 33 DTTPLTIET-------SVPFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAI 105 (348)
Q Consensus 33 ~~~~~~~~~-------~~~~~~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~v 105 (348)
.+.++.+|+ ...|.+.+||. ..+.++.|+.+.+|+.+..+..||.++...|...|.. +.+|.|+..+
T Consensus 141 Ycgsig~E~~hi~~~~~~~Wl~~riE~--~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KRF----slEG~eslip 214 (906)
T COG0567 141 YCGSIGVEYMHISDPEEKRWLQERIES--GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRF----SLEGGESLIP 214 (906)
T ss_pred hccceeeeeeccCCHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCccc----cccchhhHHH
Confidence 455666552 12699999998 7789999999999999999999999999999854432 3689999998
Q ss_pred HHHhcCC------CCCEEEc-CCcchHHHHh--cCCCHHHHHHHHhCCCCCCCCCCCC-CcCCCC------C----CCCc
Q 018967 106 GMEAGIT------KKDSIIT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGCSHGKGG-SMHFYK------K----DSGF 165 (348)
Q Consensus 106 g~~~~l~------~~D~i~~-~yR~~~~~l~--~G~~~~~~~ael~g~~~g~~~G~gg-s~h~~~------~----~~~~ 165 (348)
++...++ .++++++ .|||+.++|+ .|++++.+|.|+.|....... .|. ..|++. . ...+
T Consensus 215 ~l~~~i~~~~~~G~~~vviGMaHRGRLNvL~nvlgKp~~~if~eF~g~~~~~~~-sGDVKYH~G~~~~~~~~~~~v~l~L 293 (906)
T COG0567 215 MLDELIDRAGKQGVKEVVIGMAHRGRLNVLVNVLGKPYRDIFDEFEGKSAEPDL-SGDVKYHLGFSSDRQTDGGKVHLSL 293 (906)
T ss_pred HHHHHHHHHHhcCcceEEecccccchHHHHHHHhCCCHHHHHHHhCCCCCCCCc-ccccccccccccccccCCCeeEEEe
Confidence 8876654 5789999 7999999998 799999999999996532111 111 244442 1 1134
Q ss_pred cCCCccccchhHHHHHHHHHHHhCCC-----CcEEEEEeCCccc-cchhHHHHHHHHHHCCCC---eEEEEecCCccccc
Q 018967 166 YGGHGIVGAQIPLGCGLAFAQKYSKD-----ETVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCENNHYGMGT 236 (348)
Q Consensus 166 ~~~~g~lG~~lp~A~G~A~A~k~~~~-----~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LP---vI~Vv~NN~~~i~~ 236 (348)
..++++|....|+..|.+.|.+.... ..+.|.++||.++ +||.+.|+||+....+.- .|++|.||+.|++|
T Consensus 294 a~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTT 373 (906)
T COG0567 294 AFNPSHLEIVNPVVEGSVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTT 373 (906)
T ss_pred cCCcchhhhhchhhhcchHhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCC
Confidence 56789999999999999999886533 3578899999998 899999999999887764 69999999999998
Q ss_pred ccc--cccC-CchHHhhcCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHH
Q 018967 237 AEW--RAAK-SPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 312 (348)
Q Consensus 237 ~~~--~~~~-~~~~~~~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~ 312 (348)
+.. ++++ ++|+++ ..+.|.++|+|.||+|+..+.+.|++++.. +++++|++.+||.+||++.|+|+ +..+..++
T Consensus 374 sp~~sRSt~Y~TDvAK-m~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs-~TqP~mY~ 451 (906)
T COG0567 374 SPADARSTPYCTDVAK-MIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPS-VTQPLMYQ 451 (906)
T ss_pred CcccccCCCCCCChhh-ccCCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCcccccc-ccCHHHHH
Confidence 722 2222 345553 578999999999999999999999999888 99999999999999999999986 89999999
Q ss_pred HHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 313 GVRQERDPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 313 ~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
.++++..+.+.|.++|+++|++++++++.+.++++
T Consensus 452 ~I~~h~t~r~~ya~~Lv~~gvis~~~~~~~~~~~r 486 (906)
T COG0567 452 KIKKHPTVRKLYADKLIAEGVISEEEADELVNDYR 486 (906)
T ss_pred HHhcCCChhhhHHHHHHhhccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999998875
No 17
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.3e-30 Score=263.39 Aligned_cols=297 Identities=19% Similarity=0.282 Sum_probs=250.0
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC------CCCEE
Q 018967 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT------KKDSI 117 (348)
Q Consensus 44 ~~~~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~------~~D~i 117 (348)
.|...++|.| +...+|.|+.+-+|..+.+.-+||+++...+..-|..| .+|.|++..|+...++ .+++|
T Consensus 232 nWir~k~EtP-~~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKRFG----LEGcE~lIP~mK~iiDrS~elGVe~iv 306 (1017)
T KOG0450|consen 232 NWIRQKFETP-GPMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRFG----LEGCEVLIPAMKTIIDRSSELGVESIV 306 (1017)
T ss_pred HHHHHhccCC-CccccCHHHHHHHHHHHHHhhHHHHHHhhhCCcccccc----ccchhhhhhHHHHHhhhhhhcCchheE
Confidence 6999999975 78899999999999999999999999999998755545 6999999999877665 57889
Q ss_pred Ec-CCcchHHHHh--cCCCHHHHHHHHhCCCCCCCCCCCC-CcCCCC----CC--------CCccCCCccccchhHHHHH
Q 018967 118 IT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGCSHGKGG-SMHFYK----KD--------SGFYGGHGIVGAQIPLGCG 181 (348)
Q Consensus 118 ~~-~yR~~~~~l~--~G~~~~~~~ael~g~~~g~~~G~gg-s~h~~~----~~--------~~~~~~~g~lG~~lp~A~G 181 (348)
++ .|||+.+.|+ .-.|++++|.|+-|.+.. .-|.|. ..|++. +. ..+..++++|.+.-|+.+|
T Consensus 307 iGMpHRGRLNvL~NVvRKpl~qIfseF~g~~~~-DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~G 385 (1017)
T KOG0450|consen 307 IGMPHRGRLNVLANVVRKPLEQIFSEFSGLEAA-DEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMG 385 (1017)
T ss_pred ecCCccchhHHHHHHHhhHHHHHHHhccCCCCC-cCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeec
Confidence 99 6999999998 467999999999985432 224433 356553 11 1356789999999999999
Q ss_pred HHHHHHhCC-----CCcEEEEEeCCccc-cchhHHHHHHHHHHCCCC---eEEEEecCCccccccc--ccccCCchHHhh
Q 018967 182 LAFAQKYSK-----DETVTFALYGDGAA-NQGQLFEALNIAALWDLP---AILVCENNHYGMGTAE--WRAAKSPSYYKR 250 (348)
Q Consensus 182 ~A~A~k~~~-----~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LP---vI~Vv~NN~~~i~~~~--~~~~~~~~~~~~ 250 (348)
--.|.++.. .+...|.++||+|+ +||.++|++.+..+.+.- .|+||.|||+|+.|.. .++++...-.++
T Consensus 386 KtrA~q~y~~D~~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcTDvar 465 (1017)
T KOG0450|consen 386 KTRAEQFYTGDEEGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCTDVAR 465 (1017)
T ss_pred hHHHHHHhccccccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCCchhHHH
Confidence 999988643 44689999999998 899999999987655543 6999999999998743 344444333346
Q ss_pred cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHH
Q 018967 251 GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLIL 329 (348)
Q Consensus 251 g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~ 329 (348)
..+.|.++||++|++||.-+++-|.++..+ ++.++|++++||.+||++.|.|+ |..|-+++.+++++..+..|.+.|+
T Consensus 466 ~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~DeP~-FTQPlMYk~I~k~~~~l~~Y~ekLl 544 (1017)
T KOG0450|consen 466 VVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEIDEPM-FTQPLMYKQIRKHKPVLQKYAEKLL 544 (1017)
T ss_pred HhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCcccCcc-ccchHHHHHHHcCCcHHHHHHHHHH
Confidence 688999999999999999999999999888 99999999999999999999996 8999999999998999999999999
Q ss_pred HcCCCCHHHHHHHHHHHH
Q 018967 330 AHDLATEKELKVFIQLVY 347 (348)
Q Consensus 330 ~~g~~t~~el~~i~~~~~ 347 (348)
++|.++++|++++.+++.
T Consensus 545 ~egtvs~~evd~~~~k~~ 562 (1017)
T KOG0450|consen 545 SEGTVSQQEVDEEIKKYD 562 (1017)
T ss_pred hcCcccHHHHHHHHHHHH
Confidence 999999999999887653
No 18
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=99.96 E-value=2e-28 Score=242.99 Aligned_cols=289 Identities=18% Similarity=0.214 Sum_probs=236.5
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccccccCCChhHHHHHHHHhcC------CCCCE
Q 018967 44 PFTSHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKA-KLVRGFCHLYDGQEAVAIGMEAGI------TKKDS 116 (348)
Q Consensus 44 ~~~~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~-g~~~gf~h~~~GqEa~~vg~~~~l------~~~D~ 116 (348)
.|...++|. -....+.++++.++-+.|+.+..||.++...|.. ++.+ ..|-|.+..-....| +.+|+
T Consensus 140 ~W~a~nFE~-l~~e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvKRYG-----gEGAESM~aFF~eLl~~sa~~~ie~v 213 (913)
T KOG0451|consen 140 EWLARNFET-LDQEQLGKEERCEIAELMLKSQAFDNFLATKFPTVKRYG-----GEGAESMLAFFWELLRDSAQANIEHV 213 (913)
T ss_pred HHHHHHHHH-HHHHHhhHHHHHHHHHHHHhhhhHHHHHHhccchhhhhc-----cccHHHHHHHHHHHHHHHHhcCcceE
Confidence 788888886 3457899999999999999999999999998886 4432 578888754443333 36799
Q ss_pred EEc-CCcchHHHHh--cCCCHHHHHHHHhCCCCCCC------------------CCCCCCcCCCCCCCCccCCCccccch
Q 018967 117 IIT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGCS------------------HGKGGSMHFYKKDSGFYGGHGIVGAQ 175 (348)
Q Consensus 117 i~~-~yR~~~~~l~--~G~~~~~~~ael~g~~~g~~------------------~G~ggs~h~~~~~~~~~~~~g~lG~~ 175 (348)
|++ .|||+.+.++ ..+++..+|..+-|....+. +|.++..|. .+.++++++.+.
T Consensus 214 iigmpHRGRlnLlt~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lhv-----tMlpNPSHLEAv 288 (913)
T KOG0451|consen 214 IIGMPHRGRLNLLTALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLHV-----TMLPNPSHLEAV 288 (913)
T ss_pred EEeccccCcchHHHHHhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceEE-----EecCChhhhhcc
Confidence 999 6999999997 79999999999999865432 233333332 357889999999
Q ss_pred hHHHHHHHHHHHhCC--------------CCcEEEEEeCCccc-cchhHHHHHHHHHHC--CCC-eEEEEecCCcccccc
Q 018967 176 IPLGCGLAFAQKYSK--------------DETVTFALYGDGAA-NQGQLFEALNIAALW--DLP-AILVCENNHYGMGTA 237 (348)
Q Consensus 176 lp~A~G~A~A~k~~~--------------~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~--~LP-vI~Vv~NN~~~i~~~ 237 (348)
.|+|+|-+.+.+... +..+.|.++|||++ +||.++|++|++... ++. .+++|.||+.|+.++
T Consensus 289 NPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp 368 (913)
T KOG0451|consen 289 NPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTP 368 (913)
T ss_pred CchhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCc
Confidence 999999999977542 12368889999997 899999999998543 333 589999999999998
Q ss_pred cccccC---CchHHhhcCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHH
Q 018967 238 EWRAAK---SPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISG 313 (348)
Q Consensus 238 ~~~~~~---~~~~~~~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~ 313 (348)
.++... +.|+++ .+++|.++|+|.||++|.+|.+.|.+|-|+ .+.++|++.|||.+||++.|+|+ |.+|-++++
T Consensus 369 ~~rGRSs~ycsDiaK-~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~-ftspvmyk~ 446 (913)
T KOG0451|consen 369 GDRGRSSAYCSDIAK-SIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPT-FTSPVMYKE 446 (913)
T ss_pred ccccccchhhhHHHH-HhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCcc-ccChhHHHH
Confidence 776433 245543 578999999999999999999999999999 99999999999999999999985 999999999
Q ss_pred HHhcCCHH-HHHHHHHHHcCCCCHHHHHHHHHHH
Q 018967 314 VRQERDPI-ERIRKLILAHDLATEKELKVFIQLV 346 (348)
Q Consensus 314 ~~~~~DPi-~~~~~~L~~~g~~t~~el~~i~~~~ 346 (348)
+++ |.-+ ..|.++|+++|++||++++++..+.
T Consensus 447 v~a-ReSvPdlya~~L~~eg~~tee~vkE~~~~y 479 (913)
T KOG0451|consen 447 VEA-RESVPDLYAQQLAKEGVLTEEKVKEMRDEY 479 (913)
T ss_pred HHh-hhcccHHHHHHHHhcccccHHHHHHHHHHH
Confidence 984 5544 5689999999999999999998765
No 19
>PRK12754 transketolase; Reviewed
Probab=99.92 E-value=1e-23 Score=221.25 Aligned_cols=149 Identities=23% Similarity=0.232 Sum_probs=125.6
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCC----------CCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~----------~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~ 232 (348)
++..++|++|+|+++|+|+|+|.|+.+ .+..|+|++|||+++||++|||+++|+.|+|| +|+||+||++
T Consensus 108 gve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~ 187 (663)
T PRK12754 108 GVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI 187 (663)
T ss_pred CccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCC
Confidence 678889999999999999999999876 37899999999999999999999999999999 5799999999
Q ss_pred ccccccccccCCchHHhh--cCCcceEE-EcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC-CC-CCCCCC-
Q 018967 233 GMGTAEWRAAKSPSYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM-SD-PGSTYR- 306 (348)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~--g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~-~D-~~~~YR- 306 (348)
+++++.+... ..++.++ +||.++++ |||||++++.+|+++|.+. .++|++|+++|++..|.+. .+ +..+..
T Consensus 188 ~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~~--~~~Pt~I~~~T~~g~G~~~~e~~~~~Hg~~ 264 (663)
T PRK12754 188 SIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARAV--TDKPSLLMCKTIIGFGSPNKAGTHDSHGAP 264 (663)
T ss_pred ccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHhc--CCCCEEEEEEeeeccCccccCCCccccCCC
Confidence 9999887665 4566664 58999999 8999999999999988752 3889999999999999874 22 222222
Q ss_pred -CHHHHHHHH
Q 018967 307 -TRDEISGVR 315 (348)
Q Consensus 307 -~~~e~~~~~ 315 (348)
++||++..+
T Consensus 265 l~~~~~~~~~ 274 (663)
T PRK12754 265 LGDAEIALTR 274 (663)
T ss_pred CCHHHHHHHH
Confidence 566666554
No 20
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.92 E-value=1.3e-23 Score=221.07 Aligned_cols=149 Identities=24% Similarity=0.298 Sum_probs=123.1
Q ss_pred CCccCCCccccchhHHHHHHHHHHHhCC----------CCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCC
Q 018967 163 SGFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNH 231 (348)
Q Consensus 163 ~~~~~~~g~lG~~lp~A~G~A~A~k~~~----------~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~ 231 (348)
.++..++|++|+++|+|+|+|+|.|+.+ .+.+|+|++|||++++|.+|||+++|+.|+|| +|+||+||+
T Consensus 103 ~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~ 182 (653)
T TIGR00232 103 AGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNR 182 (653)
T ss_pred CCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 3677889999999999999999999863 47889999999999999999999999999999 678899999
Q ss_pred cccccccccccCCchHHhh--cCCcceEEE-cCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCC--CCCCC
Q 018967 232 YGMGTAEWRAAKSPSYYKR--GDYVPGLKV-DGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSD--PGSTY 305 (348)
Q Consensus 232 ~~i~~~~~~~~~~~~~~~~--g~gipg~~V-DG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D--~~~~Y 305 (348)
|+++++.+... ..++.++ ++|+++++| ||||+.++.+|+++|.+ . ++|++|+++|+|++|.+... +..++
T Consensus 183 ~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~A~~~a~~---~~~~P~~I~~~T~~g~G~~~~e~~~~~H~ 258 (653)
T TIGR00232 183 ISIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDAAIEEAKA---SKDKPTLIEVTTTIGFGSPNKAGTHGVHG 258 (653)
T ss_pred eeecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHh---CCCCCEEEEEEeeecccCcccCCCCcccC
Confidence 99999887665 4566654 589999999 99999999999987754 3 58999999999999987332 22222
Q ss_pred C--CHHHHHHHH
Q 018967 306 R--TRDEISGVR 315 (348)
Q Consensus 306 R--~~~e~~~~~ 315 (348)
. ++||++..+
T Consensus 259 ~~~~~~~~~~~~ 270 (653)
T TIGR00232 259 APLGDEDVKLTK 270 (653)
T ss_pred CCCCHHHHHHHH
Confidence 2 455555543
No 21
>PTZ00089 transketolase; Provisional
Probab=99.92 E-value=1.6e-23 Score=220.69 Aligned_cols=150 Identities=23% Similarity=0.270 Sum_probs=127.7
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCCC----------CcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~----------~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~ 232 (348)
++..++|++|+++++|+|+|+|.|+.+. +..|+|++|||++++|.+|||+|+|+.|+|| +|+||+||++
T Consensus 110 gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~ 189 (661)
T PTZ00089 110 GVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKI 189 (661)
T ss_pred CcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCc
Confidence 5566799999999999999999998653 7889999999999999999999999999998 6899999999
Q ss_pred ccccccccccCCchHHhh--cCCcceEEE-cCC-CHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCC---CC
Q 018967 233 GMGTAEWRAAKSPSYYKR--GDYVPGLKV-DGM-DALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGS---TY 305 (348)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~--g~gipg~~V-DG~-D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~---~Y 305 (348)
+++++..... ..++.++ ++|++++.| ||| |+.++.+|+++|++. .++|++|+++|+|++||.+.++.. .+
T Consensus 190 ~i~~~~~~~~-~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~--~~~P~~I~~~T~kG~G~~~e~~~~~H~~~ 266 (661)
T PTZ00089 190 TIDGNTDLSF-TEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS--KGKPKLIIVKTTIGYGSSKAGTEKVHGAP 266 (661)
T ss_pred ccccCccccc-CccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc--CCCcEEEEEEeeecCCCCcCCCCCccCCC
Confidence 9998876543 3445443 588889999 999 999999999998863 278999999999999987776542 36
Q ss_pred CCHHHHHHHHh
Q 018967 306 RTRDEISGVRQ 316 (348)
Q Consensus 306 R~~~e~~~~~~ 316 (348)
.+.+|++.+++
T Consensus 267 ~~~~~~~~~~~ 277 (661)
T PTZ00089 267 LGDEDIAQVKE 277 (661)
T ss_pred CCHHHHHHHHH
Confidence 67888887764
No 22
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.92 E-value=1.6e-23 Score=189.92 Aligned_cols=126 Identities=26% Similarity=0.306 Sum_probs=107.4
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccC
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAK 243 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~ 243 (348)
++..++|++|+++|+|+|+|+|.|+++++++|+|++|||++++|.+||++++|+.+++|+|+||+||+|+++++.+. .
T Consensus 69 ~~~~~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~~--~ 146 (195)
T cd02007 69 YDAFGTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVGT--P 146 (195)
T ss_pred CceECCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCCC--H
Confidence 45568999999999999999999999999999999999999999999999999999999999999999998876542 1
Q ss_pred CchHHhhcCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 018967 244 SPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (348)
Q Consensus 244 ~~~~~~~g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (348)
...+...||++.. .|||+|++++.+++++|++ .++|++|+++|++.+|
T Consensus 147 ~~~~~a~G~~~~~-~vdG~d~~~l~~a~~~a~~---~~~P~~I~~~T~kg~g 194 (195)
T cd02007 147 GNLFEELGFRYIG-PVDGHNIEALIKVLKEVKD---LKGPVLLHVVTKKGKG 194 (195)
T ss_pred HHHHHhcCCCccc-eECCCCHHHHHHHHHHHHh---CCCCEEEEEEEecccC
Confidence 1223334555533 5899999999999988764 3899999999999876
No 23
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.91 E-value=2.7e-23 Score=217.40 Aligned_cols=230 Identities=24% Similarity=0.252 Sum_probs=163.1
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCEEEc--CCcchH
Q 018967 49 QCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRDHC 125 (348)
Q Consensus 49 ~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~-~~D~i~~--~yR~~~ 125 (348)
.++.|.+...++.++|.++- ..+|++=..+.. .. .|+.-++.|---+.+++...++ +.|.++- .|.+.+
T Consensus 3 ~i~~p~dl~~l~~~~l~~la---~~iR~~~i~~~~--~~---~GH~g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~ 74 (617)
T TIGR00204 3 LINSPQELRLLSIDELEKLC---DELRRYLLESVS--AS---GGHLASGLGTVELTVALHYVFNTPKDQFIWDVGHQAYP 74 (617)
T ss_pred CCCCHHHHhhCCHHHHHHHH---HHHHHHHHHHHh--cc---CCCcCcchhHHHHHHHHHhhCCCCCCcEEEecchHHHH
Confidence 46677888888888877664 345654443332 22 2444446666666666776777 6786544 588877
Q ss_pred HHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCcc-CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccc
Q 018967 126 TFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFY-GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA 204 (348)
Q Consensus 126 ~~l~~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~-~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~ 204 (348)
+.+..|. . +-|..+ .+.. | -+.|....+.++. .++|++|+++++|+|+|+|.|+++.+.+++|++|||++
T Consensus 75 ~~~~~G~-~-~~l~~~-r~~g----~--l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~ 145 (617)
T TIGR00204 75 HKLLTGR-R-EKFSTL-RQKK----G--LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAI 145 (617)
T ss_pred HHHHhCc-H-HHhcch-hhcC----C--cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCccc
Confidence 7777785 1 112111 1111 1 1234333233333 47899999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccC------------------------C----------------
Q 018967 205 NQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAK------------------------S---------------- 244 (348)
Q Consensus 205 ~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~------------------------~---------------- 244 (348)
++|.+|||+|+|+.|+||+|+||+||+++++++....+. .
T Consensus 146 ~eG~~~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 225 (617)
T TIGR00204 146 TAGMAFEALNHAGDLKTDMIVILNDNEMSISENVGALSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMK 225 (617)
T ss_pred ccccHHHHHHHHHhcCCCEEEEEECCCcccCCCchHHHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhh
Confidence 999999999999999999999999999999876542110 0
Q ss_pred ------chHHhhcCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018967 245 ------PSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (348)
Q Consensus 245 ------~~~~~~g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~ 299 (348)
..|.+.||++.+ .|||||+.++.++++.+++. ++|++|+++|.|..|.+..
T Consensus 226 ~~~~~~~~f~~~G~~~~~-~vDGhd~~~l~~al~~ak~~---~~P~~i~~~T~KGkG~~~~ 282 (617)
T TIGR00204 226 GLVVPGTFFEELGFNYIG-PVDGHDLLELIETLKNAKKL---KGPVFLHIQTKKGKGYKPA 282 (617)
T ss_pred hccCccchHHHcCCcEEc-ccCCCCHHHHHHHHHHHhcC---CCCEEEEEEecCCCCCchh
Confidence 013334554433 89999999999999876642 7899999999999997654
No 24
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.91 E-value=2.6e-22 Score=188.82 Aligned_cols=135 Identities=22% Similarity=0.307 Sum_probs=119.6
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCccccccccccc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAA 242 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~~~~~~~~ 242 (348)
++...+|++|+++|.|+|+|+|.++.++++.|+|++|||++++|.++|++++|+.++|| +++|++||+|++..+.....
T Consensus 99 g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~~~~ 178 (255)
T cd02012 99 GVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTDDIL 178 (255)
T ss_pred CeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHhhcc
Confidence 66677899999999999999999999999999999999999999999999999999998 77999999999877655444
Q ss_pred CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCC
Q 018967 243 KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSD 300 (348)
Q Consensus 243 ~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D 300 (348)
...++.++ ++|++++.|||+|+.++.+++++|.+. .++|++|+++|.|..||+...
T Consensus 179 ~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~~~--~~~P~~I~~~t~kg~g~~~~e 236 (255)
T cd02012 179 FTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAKKS--KGKPTLIIAKTIKGKGVPFME 236 (255)
T ss_pred CchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHHHc--CCCCEEEEEEeecccccCccC
Confidence 55677764 589999999999999999999998862 278999999999999999543
No 25
>PRK12753 transketolase; Reviewed
Probab=99.91 E-value=7e-23 Score=215.62 Aligned_cols=133 Identities=23% Similarity=0.243 Sum_probs=117.0
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCCC----------CcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~----------~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~ 232 (348)
++..++|++|+++++|+|+|+|.|+.+. +..|+|++|||++++|.+|||+|+|+.|+|| +|+||+||++
T Consensus 108 gve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~ 187 (663)
T PRK12753 108 GVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGI 187 (663)
T ss_pred CcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCC
Confidence 6778899999999999999999998752 6899999999999999999999999999998 6789999999
Q ss_pred ccccccccccCCchHHhh--cCCcceEE-EcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018967 233 GMGTAEWRAAKSPSYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (348)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~--g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~ 299 (348)
+++++.+... ..++.++ +||++++. |||||+.++++|+++|++. .++|++|+++|++++|++..
T Consensus 188 ~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~~--~~~P~~I~~~T~kG~G~~~~ 254 (663)
T PRK12753 188 SIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQSV--KDKPSLIICRTIIGFGSPNK 254 (663)
T ss_pred cCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHHC--CCCeEEEEEEEeecCCCCcc
Confidence 9999877644 3455553 58899994 9999999999999998862 38899999999999999843
No 26
>PRK05899 transketolase; Reviewed
Probab=99.90 E-value=1.2e-22 Score=213.26 Aligned_cols=148 Identities=24% Similarity=0.297 Sum_probs=125.8
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCCC----------CcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD----------ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~----------~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~ 232 (348)
++...+|++|+++|.|+|+|+|.++.+. ++.|+|++|||++++|.+||++++|+.++|| +|+|++||+|
T Consensus 112 ~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~ 191 (624)
T PRK05899 112 GVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRI 191 (624)
T ss_pred CeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence 5666799999999999999999998776 8899999999999999999999999999999 6799999999
Q ss_pred ccccccccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCC---
Q 018967 233 GMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRT--- 307 (348)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~YR~--- 307 (348)
+++.+.... ..+++.++ ++|++++.|||||+.++.+|+++|++. ++|++|++.|+|++||+..++...|+.
T Consensus 192 ~~~~~~~~~-~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a~~~---~~P~vI~v~t~kg~g~~~~e~~~~~H~~~~ 267 (624)
T PRK05899 192 SIDGPTEGW-FTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEAKAS---TKPTLIIAKTIIGKGAPNKEGTHKVHGAPL 267 (624)
T ss_pred ccccccccc-ccccHHHHhccCCCeEEEECCCCHHHHHHHHHHHHhc---CCCEEEEEEeEeccCCccccCCCcccCCCC
Confidence 998765532 34577664 589999999999999999999988753 799999999999999986665444543
Q ss_pred -HHHHHHHH
Q 018967 308 -RDEISGVR 315 (348)
Q Consensus 308 -~~e~~~~~ 315 (348)
+++++.+.
T Consensus 268 ~~~~~~~~~ 276 (624)
T PRK05899 268 GAEEIAAAK 276 (624)
T ss_pred CHHHHHHHH
Confidence 56666654
No 27
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.90 E-value=6.3e-23 Score=185.50 Aligned_cols=213 Identities=19% Similarity=0.188 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccCCChh-HHHHHHHHhcCC--C-------CCEEEcC--CcchHHHHh---
Q 018967 65 LSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQ-EAVAIGMEAGIT--K-------KDSIITA--YRDHCTFLG--- 129 (348)
Q Consensus 65 ~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~Gq-Ea~~vg~~~~l~--~-------~D~i~~~--yR~~~~~l~--- 129 (348)
.++-+....+|+--.++.....+ |+++.+... |-+++-....|+ | .|+++-+ |=..+.+-+
T Consensus 8 ~~L~~~A~~iRr~~v~m~~~~~~----GH~G~SLS~~eILa~LYf~~m~~~p~~p~~~~RDrfiLSKGHaa~AlYa~Lae 83 (243)
T COG3959 8 DELERIAREIRRNIVRMLANAGS----GHVGGSLSVVEILAVLYFKIMNIDPDDPKWPGRDRFILSKGHAAPALYATLAE 83 (243)
T ss_pred HHHHHHHHHHHHHHHHHhcccCC----CCcCccchHHHHHHHHHHHHhccCCCCCCCCCCCeEEEecccchHHHHHHHHH
Confidence 34445556788766655443333 444444444 334444444433 2 4665443 433332221
Q ss_pred cCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCCCC----CccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Q 018967 130 RGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDS----GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAAN 205 (348)
Q Consensus 130 ~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~----~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~ 205 (348)
+|+-+++-+. +.++-+|-..++|+. ++..++|+||+++++|+|+|++.|+++.+..|+++.|||+++
T Consensus 84 ~G~~p~eeL~---------~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~ 154 (243)
T COG3959 84 KGYFPEEELE---------TFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELD 154 (243)
T ss_pred cCCCCHHHHH---------HhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccc
Confidence 5554444332 233344433334433 677789999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHCCCC-eEEEEecCCcccccccccccCCchHHh--hcCCcceEEEcCCCHHHHHHHHHHHHHHhccCC
Q 018967 206 QGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNG 282 (348)
Q Consensus 206 ~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~~~~~~~~~~~~~~~--~g~gipg~~VDG~D~~av~~a~~~A~~~ar~~g 282 (348)
||++|||+..|+.++|. +|.||+-|........+...+..++.+ ++||...++|||||+.++.+|+..+..- +++
T Consensus 155 EG~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~--~~r 232 (243)
T COG3959 155 EGQVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGS--KGR 232 (243)
T ss_pred cccHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhcc--CCC
Confidence 99999999999999998 568888888877666555444444444 3577777999999999999999877641 159
Q ss_pred CEEEEEEEec
Q 018967 283 PMILEMDTYR 292 (348)
Q Consensus 283 P~lIe~~t~R 292 (348)
|.+|.++|.+
T Consensus 233 P~~IIa~Tvk 242 (243)
T COG3959 233 PTVIIAKTVK 242 (243)
T ss_pred CeEEEEeccc
Confidence 9999999976
No 28
>PLN02790 transketolase
Probab=99.90 E-value=5.4e-22 Score=208.81 Aligned_cols=132 Identities=26% Similarity=0.302 Sum_probs=115.7
Q ss_pred CccCCCccccchhHHHHHHHHHHHh-----CCC-----CcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKY-----SKD-----ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~-----~~~-----~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~ 232 (348)
++..++|++|+++++|+|+|+|.|+ +++ +..|+|++|||++++|++|||+|+|+.|+|| +|+||+||+|
T Consensus 99 gi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~ 178 (654)
T PLN02790 99 GIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHI 178 (654)
T ss_pred CccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCc
Confidence 6788899999999999999999995 443 6899999999999999999999999999998 7899999999
Q ss_pred ccccccccccCCchHHh--hcCCcceEEEcC--CCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC
Q 018967 233 GMGTAEWRAAKSPSYYK--RGDYVPGLKVDG--MDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM 298 (348)
Q Consensus 233 ~i~~~~~~~~~~~~~~~--~g~gipg~~VDG--~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~ 298 (348)
+++++.+.... .++.+ .+||++++.||| ||+.++.+|++.|++. .++|++|+++|++++|.+.
T Consensus 179 ~i~~~~~~~~~-~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~a~~~--~~~P~lI~~~T~kG~G~~~ 245 (654)
T PLN02790 179 SIDGDTEIAFT-EDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAKAV--TDKPTLIKVTTTIGYGSPN 245 (654)
T ss_pred cccCCcccccc-hhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc--CCCeEEEEEEEeecCCCcc
Confidence 99998775543 34444 358999999988 8999999999988762 3899999999999999874
No 29
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.90 E-value=2e-22 Score=209.81 Aligned_cols=231 Identities=19% Similarity=0.174 Sum_probs=162.5
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCEE-Ec-CCcc
Q 018967 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSI-IT-AYRD 123 (348)
Q Consensus 47 ~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~-~~D~i-~~-~yR~ 123 (348)
...++.|.+..+++.++|.++ ...+|..-..+... . .|+...+.|.--+.+.+...++ +.|.+ ++ .|.+
T Consensus 7 ~~~~~~~~~~~~~~~~~l~~~---a~~iR~~~~~~~~~-~----~gH~g~~ls~~~i~~~L~~~~~~~rDr~ils~GH~~ 78 (580)
T PRK05444 7 LDTINSPADLKKLSEEELPQL---ADEIREFLIDVVSK-T----GGHLGSNLGVVELTVALHYVFDTPKDRIIWDVGHQA 78 (580)
T ss_pred hhccCCHHHHhcCCHHHHHHH---HHHHHHHHHHHHHh-c----CCCcCCCccHHHHHHHHHHhcCCCCccEEEeccHHH
Confidence 445666778888888877655 33466654444432 2 2433345555444555554554 45764 44 4666
Q ss_pred hHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCC--cCCCCCC-CCccCCCccccchhHHHHHHHHHHHhC-CCCcEEEEEe
Q 018967 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGS--MHFYKKD-SGFYGGHGIVGAQIPLGCGLAFAQKYS-KDETVTFALY 199 (348)
Q Consensus 124 ~~~~l~~G~~~~~~~ael~g~~~g~~~G~ggs--~h~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~-~~~~~vv~~~ 199 (348)
..+....|. . .++. +.++.|+ .|....+ .++..++|++|+++|+|+|+|+|.|++ ++++.|+|++
T Consensus 79 y~~~~~~g~-~----~~l~------~~~~~~s~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~ 147 (580)
T PRK05444 79 YPHKILTGR-R----DRFD------TLRQKGGLSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVI 147 (580)
T ss_pred HHHHHHhCc-H----HHhc------CcccCCCCCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEE
Confidence 555555664 1 1221 1122222 3544322 367778999999999999999999998 6889999999
Q ss_pred CCccccchhHHHHHHHHHHCCCCeEEEEecCCccccccccccc---CCchHHh--hcCCcceE-EEcCCCHHHHHHHHHH
Q 018967 200 GDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAA---KSPSYYK--RGDYVPGL-KVDGMDALAVKQACKF 273 (348)
Q Consensus 200 GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~---~~~~~~~--~g~gipg~-~VDG~D~~av~~a~~~ 273 (348)
|||++++|.+||++++|+.+++|+|+|++||+|+++++..... ...++.+ +++|++++ .|||+|+.++.+++++
T Consensus 148 GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al~~ 227 (580)
T PRK05444 148 GDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETLKN 227 (580)
T ss_pred cccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999887654321 1122222 35888888 5899999999999987
Q ss_pred HHHHhccCCCEEEEEEEecCCCCCCC
Q 018967 274 AKEHALKNGPMILEMDTYRYHGHSMS 299 (348)
Q Consensus 274 A~~~ar~~gP~lIe~~t~R~~GHs~~ 299 (348)
|++ .++|++|++.|+|.+|.+..
T Consensus 228 a~~---~~~P~lI~~~T~kg~G~~~~ 250 (580)
T PRK05444 228 AKD---LKGPVLLHVVTKKGKGYAPA 250 (580)
T ss_pred HHh---CCCCEEEEEEecCCcCCChh
Confidence 764 28999999999999998744
No 30
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.88 E-value=1.1e-21 Score=190.87 Aligned_cols=190 Identities=22% Similarity=0.278 Sum_probs=130.2
Q ss_pred CCCCCcCCCCCCC----CccCCCccccchhHHHHHHHHHHHhCC----------CCcEEEEEeCCccccchhHHHHHHHH
Q 018967 151 GKGGSMHFYKKDS----GFYGGHGIVGAQIPLGCGLAFAQKYSK----------DETVTFALYGDGAANQGQLFEALNIA 216 (348)
Q Consensus 151 G~ggs~h~~~~~~----~~~~~~g~lG~~lp~A~G~A~A~k~~~----------~~~~vv~~~GDGa~~~G~~~Ealn~A 216 (348)
.+.||...++|+. ++..++|+||+|+++|+|+|+|.|+.+ -+..|+|++|||++++|++|||+.+|
T Consensus 88 r~~~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A 167 (332)
T PF00456_consen 88 RQLGSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLA 167 (332)
T ss_dssp TSTTSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHH
T ss_pred ccCCCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHH
Confidence 3445544445543 566679999999999999999988642 35789999999999999999999999
Q ss_pred HHCCCC-eEEEEecCCcccccccccccCCchHHh--hcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 217 ALWDLP-AILVCENNHYGMGTAEWRAAKSPSYYK--RGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 217 a~~~LP-vI~Vv~NN~~~i~~~~~~~~~~~~~~~--~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
+.++|. +|+|+++|+.++..+.+.... .++.+ +++|...++| ||||+.++.+|++.|... +++|++|.++|.+
T Consensus 168 ~~~~L~nLi~i~D~N~~q~dg~~~~~~~-~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~--~~kP~~Ii~~Tvk 244 (332)
T PF00456_consen 168 GHYKLDNLIVIYDSNGIQIDGPTDIVFS-EDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKAS--KGKPTVIIARTVK 244 (332)
T ss_dssp HHTT-TTEEEEEEEESEETTEEGGGTHH-SHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHS--TSS-EEEEEEE-T
T ss_pred HHhCCCCEEEEEecCCcccCCCcccccc-hHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhc--CCCCceeecceEE
Confidence 999999 779999999988776554332 24433 3567777998 999999999999998751 2899999999999
Q ss_pred CCCCCCCCC--CCCCC--CHHHHHHHHhc----C-------CHHHHHHHHHHHcCCCCHHHHHHHHH
Q 018967 293 YHGHSMSDP--GSTYR--TRDEISGVRQE----R-------DPIERIRKLILAHDLATEKELKVFIQ 344 (348)
Q Consensus 293 ~~GHs~~D~--~~~YR--~~~e~~~~~~~----~-------DPi~~~~~~L~~~g~~t~~el~~i~~ 344 (348)
.+|.+.... ..++. +.||++..+++ . |....+++...+ |-..++++++.-+
T Consensus 245 G~G~~~~e~~~~~Hg~~l~~ee~~~~k~~lg~~~~~F~V~~eV~~~f~~~~~~-g~~~~~~W~~~~~ 310 (332)
T PF00456_consen 245 GKGVPFMEGTAKWHGSPLTEEEVEQAKKELGWDQEPFEVPEEVYDHFRERIAE-GAKAEAEWKELFA 310 (332)
T ss_dssp TTTSTTTTTSGGGTSS--HHHHHHHHHHHTTSSTSTTCGCHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred ecCchhhcccchhhccCCcHHHHHHHHHHcCCCCCCcccCHHHHHHHHHhhhh-HHHHHHHHHHHHH
Confidence 999965332 22343 56667766532 1 234446655443 5444444444433
No 31
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.87 E-value=4.3e-20 Score=181.18 Aligned_cols=164 Identities=21% Similarity=0.157 Sum_probs=130.0
Q ss_pred CccCCCccccchhHHHHHHHHHHHh-------CCCCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCcccc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKY-------SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMG 235 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~-------~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~ 235 (348)
++..++|++|+++++|+|+|+|.|+ .+.+..|+|++|||++++|++|||+++|+.++|. +|+|+++|++++.
T Consensus 112 gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qid 191 (386)
T cd02017 112 FWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLD 191 (386)
T ss_pred CeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccC
Confidence 4778899999999999999999998 5577899999999999999999999999999997 7799999999887
Q ss_pred cccccc-cCCchHHh--hcCCcceEEEc----------------------------------------------------
Q 018967 236 TAEWRA-AKSPSYYK--RGDYVPGLKVD---------------------------------------------------- 260 (348)
Q Consensus 236 ~~~~~~-~~~~~~~~--~g~gipg~~VD---------------------------------------------------- 260 (348)
.+.+.. ....++.+ +++|...+.||
T Consensus 192 G~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~ 271 (386)
T cd02017 192 GPVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELK 271 (386)
T ss_pred CcccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHH
Confidence 776653 23344544 35677778997
Q ss_pred -----------------CCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC--C-CCCCCC---CCHHHHHHHHhc
Q 018967 261 -----------------GMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM--S-DPGSTY---RTRDEISGVRQE 317 (348)
Q Consensus 261 -----------------G~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~--~-D~~~~Y---R~~~e~~~~~~~ 317 (348)
|||+.+|.+|+.++.+. .++|++|.+.|.+.+|.+. . ++..++ -+++|++..++.
T Consensus 272 ~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~~--~~kPt~Iia~TikG~G~~~~~e~~~~~h~~~~~~~~e~~~~~~~ 349 (386)
T cd02017 272 ALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVEH--KGKPTVILAKTIKGYGLGAAGEGRNHAHQVKKMTEDELKALRDR 349 (386)
T ss_pred HHhhcccHHhhhhhccCCCCHHHHHHHHHHHHhC--CCCCeEEEEeCeecCCCChhccCCcchhcCCCCCHHHHHHHHHH
Confidence 99999999999988852 3789999999999999872 2 333223 377777776644
Q ss_pred CCHHHHHHHHHHH
Q 018967 318 RDPIERIRKLILA 330 (348)
Q Consensus 318 ~DPi~~~~~~L~~ 330 (348)
-+ +.++...+.+
T Consensus 350 lg-~~~~~~~~~~ 361 (386)
T cd02017 350 FG-IPVSDEQLEE 361 (386)
T ss_pred cC-CCCCHHHhcc
Confidence 43 5566666554
No 32
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.86 E-value=1.1e-20 Score=198.44 Aligned_cols=234 Identities=20% Similarity=0.202 Sum_probs=159.8
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCEEE-c-CCcc
Q 018967 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSII-T-AYRD 123 (348)
Q Consensus 47 ~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~-~~D~i~-~-~yR~ 123 (348)
...++.|.+...|+.++|.++- ..+|.+=..+.. +.+ |+.-++.|---+.+++...++ |.|.++ . .|.+
T Consensus 9 l~~i~~p~dl~~l~~~~l~~~a---~~iR~~ii~~~~--~~~---GH~g~~ls~vel~~aL~~~~~~prDr~i~s~GH~~ 80 (641)
T PRK12571 9 LDRIKGPADLRALSDAELEQLA---DELRAEVISAVS--ETG---GHLGSSLGVVELTVALHAVFNTPKDKLVWDVGHQC 80 (641)
T ss_pred hhhcCCHHHHHhCCHHHHHHHH---HHHHHHHHHHHH--HhC---CCcCCCchHHHHHHHHHHhcCCCCCcEEEECchHH
Confidence 4566678888889888876653 345654443332 222 444446666666666766565 668654 4 5777
Q ss_pred hHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCCCC-CccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCc
Q 018967 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDS-GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG 202 (348)
Q Consensus 124 ~~~~l~~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~-~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG 202 (348)
.++.+..|. .+-|..+. +..+ . +.|....+. +-....|+-+.++++|+|+|+|.++.++++.|+|++|||
T Consensus 81 Y~~~~l~g~--~~~l~~~r-~~~~----l--~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG 151 (641)
T PRK12571 81 YPHKILTGR--RDRFRTLR-QKGG----L--SGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVAVIGDG 151 (641)
T ss_pred HHHHHHhCC--HHHHhhhh-hCCC----c--CCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEEEEeCc
Confidence 777777775 22222211 1111 1 123332221 101124445677899999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccc-------cCCchH----------------------------
Q 018967 203 AANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRA-------AKSPSY---------------------------- 247 (348)
Q Consensus 203 a~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~-------~~~~~~---------------------------- 247 (348)
++++|.+||++++|+.|++|+|+|++||+|+++.+.... .....|
T Consensus 152 ~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (641)
T PRK12571 152 SLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGALAAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRAREL 231 (641)
T ss_pred hhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCccHHHHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHh
Confidence 999999999999999999999999999999988766411 011001
Q ss_pred --------Hh-hcCCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018967 248 --------YK-RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (348)
Q Consensus 248 --------~~-~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~ 299 (348)
.+ .++|+.++ .|||||+.++.+|++.|++. .++|++|+++|.+++|.+..
T Consensus 232 ~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al~~ak~~--~~~P~~I~~~T~kGkG~~~~ 291 (641)
T PRK12571 232 VTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVLRAARAR--ADGPVLVHVVTEKGRGYAPA 291 (641)
T ss_pred hhhccchhhHHHHcCCEEECccCCCCHHHHHHHHHHHHhC--CCCCEEEEEEecCccCcchh
Confidence 11 24677778 79999999999999988752 28899999999999998743
No 33
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.86 E-value=2.1e-20 Score=196.26 Aligned_cols=232 Identities=19% Similarity=0.192 Sum_probs=161.9
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCEEEc--CCcc
Q 018967 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRD 123 (348)
Q Consensus 47 ~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~-~~D~i~~--~yR~ 123 (348)
...++.|.+...++.++|.++-. .+|+.-..+.. +. .|+.-++.|.--+.+++...++ |.|.++- .|..
T Consensus 34 l~~i~~p~dlk~l~~~~l~~la~---~iR~~ii~~~~--~~---~GH~g~~Ls~vel~~aL~~~~~~p~Dr~i~s~GH~a 105 (677)
T PLN02582 34 LDTINYPIHMKNLSVKELKQLAD---ELRSDVIFNVS--KT---GGHLGSSLGVVELTVALHYVFNAPQDKILWDVGHQS 105 (677)
T ss_pred hhhCCCHHHHhhCCHHHHHHHHH---HHHHHHHHHHH--hc---CCCcCccccHHHHHHHHHHhhCCCCCeEEEECcchH
Confidence 45666787888899998876644 46654433332 22 2544456666666666666665 7787655 5888
Q ss_pred hHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCCC-CCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCc
Q 018967 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKD-SGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG 202 (348)
Q Consensus 124 ~~~~l~~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG 202 (348)
.++.+..|.. ++ |..+ .+..+ -+.|....+ .+...++|++|.++++|+|+|+|.++++.++.++|++|||
T Consensus 106 y~~~~l~gr~-~~-l~~~-r~~g~------l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG 176 (677)
T PLN02582 106 YPHKILTGRR-DK-MHTM-RQTNG------LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDG 176 (677)
T ss_pred HHHHHHHccH-HH-hccc-ccCCC------cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 8888777751 11 1111 11111 123332211 2445679999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHCCCCeEEEEecCCc-cc--------ccccccc-------cCC----------------------
Q 018967 203 AANQGQLFEALNIAALWDLPAILVCENNHY-GM--------GTAEWRA-------AKS---------------------- 244 (348)
Q Consensus 203 a~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i--------~~~~~~~-------~~~---------------------- 244 (348)
++++|++|||+|.|+.|++|+|+||+||+. ++ +...... ..+
T Consensus 177 ~~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (677)
T PLN02582 177 AMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMH 256 (677)
T ss_pred ccchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHH
Confidence 999999999999999999999999999996 33 1111100 000
Q ss_pred ---------------c----hHHhhcCCcceE-EEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCC
Q 018967 245 ---------------P----SYYKRGDYVPGL-KVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299 (348)
Q Consensus 245 ---------------~----~~~~~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~ 299 (348)
+ -|. ++|+.++ .|||||+.++.++++.+++. . ++|+||+++|.+++|...+
T Consensus 257 ~~~~~~~~~~k~~~~~~~~~~fe--~~G~~y~g~iDGHd~~~L~~al~~~k~~--~~~~P~vihv~T~KGkG~~~a 328 (677)
T PLN02582 257 ELAAKVDEYARGMISGSGSTLFE--ELGLYYIGPVDGHNIDDLVTILREVKST--KTTGPVLIHVVTEKGRGYPYA 328 (677)
T ss_pred HHHHHHHHHhhhccCccccchHH--HcCCeEEeeeCCCCHHHHHHHHHHHHhc--CCCCCEEEEEEecCCCCCChh
Confidence 0 022 2566645 89999999999999988863 2 5999999999999999865
No 34
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.86 E-value=6e-21 Score=175.69 Aligned_cols=165 Identities=16% Similarity=0.163 Sum_probs=134.9
Q ss_pred ChhHHHHHHHHhcCCC-CCEEEcCCcchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchh
Q 018967 98 DGQEAVAIGMEAGITK-KDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQI 176 (348)
Q Consensus 98 ~GqEa~~vg~~~~l~~-~D~i~~~yR~~~~~l~~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~l 176 (348)
.||++.++.....|.. .|.+++.||.+..- ++.+|.++ + ...| .++|......++...+|+||+++
T Consensus 2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~g------l~~lf~qf-s----~~gg--~psH~~~~tpGi~~~~G~LG~gL 68 (227)
T cd02011 2 PGHGGPAVLANLYLEGSYSEFYPEISQDEEG------MRKLFKQF-S----FPGG--IPSHAAPETPGSIHEGGELGYSL 68 (227)
T ss_pred CChHHHHHHHHHHhcCCCccccccccccHHH------HHHHHHhc-C----CCCC--CCCCCcccCCCeeecccchhhHH
Confidence 5899998888788887 58999999877521 25667765 1 2223 56788877779999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhH---HHHHHHHHHCCCC-eEEEEecCCcccccccccc-cCCchHHhh-
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQL---FEALNIAALWDLP-AILVCENNHYGMGTAEWRA-AKSPSYYKR- 250 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~---~Ealn~Aa~~~LP-vI~Vv~NN~~~i~~~~~~~-~~~~~~~~~- 250 (348)
++|+|+|+ ++++.+|+|++|||++++|.+ ||+.+++...++. ++.|++||+|+|+++.... ....++.++
T Consensus 69 s~A~G~a~----d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~ 144 (227)
T cd02011 69 SHAYGAVF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEALF 144 (227)
T ss_pred HHHHHhhh----cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHHH
Confidence 99999974 568899999999999999996 8888888888888 6688899999999988754 334566664
Q ss_pred -cCCcceEEEcCCCHHHHHHHHHHHHHHhc
Q 018967 251 -GDYVPGLKVDGMDALAVKQACKFAKEHAL 279 (348)
Q Consensus 251 -g~gipg~~VDG~D~~av~~a~~~A~~~ar 279 (348)
+||++.+.|||+|+++|++++++|++++|
T Consensus 145 ~~yG~~~~~VDG~D~~av~~~~a~a~~~~~ 174 (227)
T cd02011 145 RGYGYEPYFVEGDDPETMHQAMAATLDWAI 174 (227)
T ss_pred HhCCCceEEECCCCHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999988765
No 35
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.84 E-value=1.2e-19 Score=189.14 Aligned_cols=233 Identities=17% Similarity=0.157 Sum_probs=159.8
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCEEEc--CCcc
Q 018967 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRD 123 (348)
Q Consensus 47 ~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~-~~D~i~~--~yR~ 123 (348)
...++.|.+...++.++|.++-. .+|+.=..+.. +. .|+.-++.|---+.+++...|+ |.|.++- .|.+
T Consensus 67 l~~i~~p~~~k~l~~~~L~~la~---eiR~~ii~~~~--~~---~GHlgssLs~vEl~~aL~~vf~~p~DriI~s~GHqa 138 (641)
T PLN02234 67 LDTINHPMHMKNLSIKELKVLSD---ELRSDVIFNVS--KT---GGHLGSNLGVVELTVALHYIFNTPHDKILWDVGHQS 138 (641)
T ss_pred hhhcCCHHHHhhCCHHHHHHHHH---HHHHHHHHHHh--hc---CCCccccchHHHHHHHHHHhcCCCCCeEEEecchhH
Confidence 33455566666677777766543 46654333322 22 3555557777777777776666 7787655 5777
Q ss_pred hHHHHhcCCCHHHHHHHHhCCCCCCCCCCCC--CcCCCCCC-CCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeC
Q 018967 124 HCTFLGRGGTLLEVFSELMGRKDGCSHGKGG--SMHFYKKD-SGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYG 200 (348)
Q Consensus 124 ~~~~l~~G~~~~~~~ael~g~~~g~~~G~gg--s~h~~~~~-~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~G 200 (348)
.++.+..|..- ++. +.+..| +.|.-..+ .+...++|++|.++++|+|+|+|.++++.++.|+|++|
T Consensus 139 ya~~~ltgr~~-----~l~------t~r~~ggl~G~p~~~es~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viG 207 (641)
T PLN02234 139 YPHKILTGRRG-----KMK------TIRQTNGLSGYTKRRESEHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIG 207 (641)
T ss_pred HHHHHHHhhhh-----hhc------ccccCCCcCCCCCCCCCCCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEc
Confidence 77777655411 111 111111 23332222 25567899999999999999999999999999999999
Q ss_pred CccccchhHHHHHHHHHHCCCCeEEEEecCCcc------ccccccc---c----------------cCCchHHhhcCCcc
Q 018967 201 DGAANQGQLFEALNIAALWDLPAILVCENNHYG------MGTAEWR---A----------------AKSPSYYKRGDYVP 255 (348)
Q Consensus 201 DGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~------i~~~~~~---~----------------~~~~~~~~~g~gip 255 (348)
||++++|++|||+|.|+..+-++|+|+++|+.. ...+.+. . .....| .++|+.
T Consensus 208 DGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~f--e~fG~~ 285 (641)
T PLN02234 208 DGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDGPTQPVGALSCALSRLQSNCGMIRETSSTLF--EELGFH 285 (641)
T ss_pred cchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCCCCCCcccHHHHHHHhhcccccccCCHHHHH--HHcCCE
Confidence 999999999999999997776789999999873 2111111 0 001122 246666
Q ss_pred eE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCC
Q 018967 256 GL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDP 301 (348)
Q Consensus 256 g~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~ 301 (348)
.+ .|||||+.++.++++.+++. +.++|++|.++|.++.|.+....
T Consensus 286 ~~g~vDGHd~~~l~~al~~~k~~-~~~~P~vI~~~T~KGkGv~~~E~ 331 (641)
T PLN02234 286 YVGPVDGHNIDDLVSILETLKST-KTIGPVLIHVVTEKGRGYPYAER 331 (641)
T ss_pred EEeeECCCCHHHHHHHHHHHHhc-CCCCCEEEEEEEecCCCcchhhc
Confidence 78 89999999999999987642 11589999999999999987654
No 36
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.82 E-value=3.1e-19 Score=170.82 Aligned_cols=170 Identities=20% Similarity=0.142 Sum_probs=135.5
Q ss_pred CCcchHHHHhcCCCHH-HHHHHHhCCCC------CCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCC
Q 018967 120 AYRDHCTFLGRGGTLL-EVFSELMGRKD------GCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDE 192 (348)
Q Consensus 120 ~yR~~~~~l~~G~~~~-~~~ael~g~~~------g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~ 192 (348)
-||||++...+|.++. .++.+.+|+++ ||+.+.+|.+|+... ++...++++|.++++|.|+++|.+..+++
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~~--~~~~i~~~~G~~~~~A~G~a~A~~~~~~~ 91 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSPL--TVPVLHTAFAATAAVASGIEEALKARGEK 91 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCcccc--cccceeehhhChHHHHHHHHHHHHhhCCC
Confidence 5789999999999988 88999998876 888888888877664 56677999999999999999999887665
Q ss_pred cE-EEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCccccccccccc-----------------CCchHHh--hcC
Q 018967 193 TV-TFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAA-----------------KSPSYYK--RGD 252 (348)
Q Consensus 193 ~~-vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~-----------------~~~~~~~--~g~ 252 (348)
.+ |++++|||++.++.+ |+|+.|+.+++|++|||+||++.+.|-.+... ...|+.. .++
T Consensus 92 ~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~ 170 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAH 170 (300)
T ss_pred CcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHc
Confidence 44 555999999988875 99999999999999999999985543221110 1123333 357
Q ss_pred CcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 018967 253 YVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (348)
Q Consensus 253 gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (348)
|++.+ +++-.|+.++.+++++|+++ +||.+|++.+.=..+
T Consensus 171 g~~yVA~~~~~~~~~~~~~i~~A~~~---~Gps~I~~~spC~~~ 211 (300)
T PRK11864 171 KVPYVATASIAYPEDFIRKLKKAKEI---RGFKFIHLLAPCPPG 211 (300)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHhC---CCCEEEEEeCCCCCC
Confidence 88776 67888999999999999974 999999998543333
No 37
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.81 E-value=1.1e-17 Score=177.17 Aligned_cols=132 Identities=23% Similarity=0.158 Sum_probs=110.7
Q ss_pred CccCCCccccchhHHHHHHHHHHHh-------CCCCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCcccc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKY-------SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMG 235 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~-------~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~ 235 (348)
++..++|+||.++++|+|+|++.|| ++.++.|+|++|||+++||++|||+.+|+.++|. +|+||++|...+.
T Consensus 183 ~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~qlD 262 (885)
T TIGR00759 183 FWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRLD 262 (885)
T ss_pred CEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Confidence 4667899999999999999999997 5678899999999999999999999999999998 6799999999887
Q ss_pred cccccccC-CchHHh--hcCCcceEEE-----------------------------------------------------
Q 018967 236 TAEWRAAK-SPSYYK--RGDYVPGLKV----------------------------------------------------- 259 (348)
Q Consensus 236 ~~~~~~~~-~~~~~~--~g~gipg~~V----------------------------------------------------- 259 (348)
.+...... ..++.+ +|+|...++|
T Consensus 263 G~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~~ffg~~~~l~ 342 (885)
T TIGR00759 263 GPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVREHFFNRTPELK 342 (885)
T ss_pred CccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHH
Confidence 76654322 223333 3555555888
Q ss_pred ----------------cCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCC
Q 018967 260 ----------------DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS 297 (348)
Q Consensus 260 ----------------DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs 297 (348)
+|||+.+|++|++.|++. +++|++|.++|.+.+|.+
T Consensus 343 ~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~~--~grPTvIlA~TvKG~G~~ 394 (885)
T TIGR00759 343 ALVADMSDADIWALNRGGHDPRKVYAAYAAAQEH--KGQPTVILAKTIKGYGMG 394 (885)
T ss_pred HHhhccchhhhhhccCCCCCHHHHHHHHHHHHhC--CCCCEEEEEeeeecCCCC
Confidence 599999999999988863 268999999999999987
No 38
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.80 E-value=1.3e-17 Score=178.18 Aligned_cols=133 Identities=20% Similarity=0.179 Sum_probs=109.9
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCC-------CCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCcccc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSK-------DETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMG 235 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~-------~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~ 235 (348)
++..++|+||.++++|+|+|++.||.. .+..|+|++|||+++||++|||+.+|+.++|. +|+||++|...+.
T Consensus 183 ~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlD 262 (889)
T TIGR03186 183 FWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLD 262 (889)
T ss_pred CeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccC
Confidence 466789999999999999999988543 36889999999999999999999999999998 6799999999887
Q ss_pred cccccccC-CchHHh--hcCCcceEEE-----------------------------------------------------
Q 018967 236 TAEWRAAK-SPSYYK--RGDYVPGLKV----------------------------------------------------- 259 (348)
Q Consensus 236 ~~~~~~~~-~~~~~~--~g~gipg~~V----------------------------------------------------- 259 (348)
.+...... ..++.+ +++|...++|
T Consensus 263 G~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~ 342 (889)
T TIGR03186 263 GPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALA 342 (889)
T ss_pred CccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHH
Confidence 76654222 234443 3566666888
Q ss_pred ----------------cCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC
Q 018967 260 ----------------DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM 298 (348)
Q Consensus 260 ----------------DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~ 298 (348)
+|||+.+|++|++.|++. +++|++|.++|.+.+|-+.
T Consensus 343 ~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~~--~~~PTvIla~TvkG~G~~~ 395 (889)
T TIGR03186 343 ALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVRH--EGRPTVILAKTMKGFGMGA 395 (889)
T ss_pred HHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC--CCCCEEEEEEeeecCCCCc
Confidence 699999999999999863 3689999999999999754
No 39
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=4.9e-18 Score=173.24 Aligned_cols=132 Identities=23% Similarity=0.291 Sum_probs=112.7
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCC-----C-----CcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSK-----D-----ETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHY 232 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~-----~-----~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~ 232 (348)
++..++|+||+|++.|+|+|+|.++.. + |..|+|++|||++++|..+||..+|+.++|. +|++.++|++
T Consensus 110 GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~I 189 (663)
T COG0021 110 GVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDI 189 (663)
T ss_pred CeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCc
Confidence 577789999999999999999988642 2 3589999999999999999999999999998 7888999999
Q ss_pred ccccccccccCCchHHhh--cCCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCC
Q 018967 233 GMGTAEWRAAKSPSYYKR--GDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSM 298 (348)
Q Consensus 233 ~i~~~~~~~~~~~~~~~~--g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~ 298 (348)
+|....+..+ ..|..+| +||...+ .+||+|++++.+|+++|+.- +++|++|+|+|.-.+|-..
T Consensus 190 siDG~~~~~f-~ed~~~RfeAyGW~vi~~~DG~D~e~I~~Ai~~Ak~~--~dkPtlI~~kTiIG~Gsp~ 255 (663)
T COG0021 190 SIDGDTSLSF-TEDVAKRFEAYGWNVIRVIDGHDLEAIDKAIEEAKAS--TDKPTLIIVKTIIGKGSPN 255 (663)
T ss_pred eeccCccccc-chhHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhc--CCCCeEEEEEeeeecCCCC
Confidence 9987766655 3455553 5777778 77999999999999999972 3899999999999998766
No 40
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.78 E-value=1.2e-18 Score=162.36 Aligned_cols=218 Identities=24% Similarity=0.316 Sum_probs=143.9
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCEEEc--CCcchH
Q 018967 49 QCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRDHC 125 (348)
Q Consensus 49 ~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~-~~D~i~~--~yR~~~ 125 (348)
.|+.|.+...++.+||.++-. .+|.+=.. . -.+..|.+.++.|---..+++...++ |.|.|+. .|.+..
T Consensus 3 ~I~~p~dlk~ls~~eL~~La~---eiR~~ii~--~---vs~~GGHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~ 74 (270)
T PF13292_consen 3 KINSPEDLKKLSIEELEQLAQ---EIREFIIE--T---VSKTGGHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYV 74 (270)
T ss_dssp G-SSHHHHTTS-GGGHHHHHH---HHHHHHHH--H---CTCCCSTHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HH
T ss_pred CCCCHHHHHcCCHHHHHHHHH---HHHHHHHH--H---HhhcCCCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccch
Confidence 456677788899999988765 45654322 1 23345777778898889999999998 7898776 799999
Q ss_pred HHHhcCCCHHHHHHHHhCCCCCCC--CCCCCCcCCCCC---CCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeC
Q 018967 126 TFLGRGGTLLEVFSELMGRKDGCS--HGKGGSMHFYKK---DSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYG 200 (348)
Q Consensus 126 ~~l~~G~~~~~~~ael~g~~~g~~--~G~ggs~h~~~~---~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~G 200 (348)
|-+ +.||...+. +-.+|-.-+..+ ++.. .+.|+-+.++++|+|+|.|.++++++..+|+++|
T Consensus 75 HKi------------LTGR~~~f~TlRq~gGlSGF~~r~ES~~D~-f~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIG 141 (270)
T PF13292_consen 75 HKI------------LTGRRDRFHTLRQYGGLSGFPKRSESEYDA-FGAGHSSTSISAALGMAVARDLKGEDRKVVAVIG 141 (270)
T ss_dssp HHH------------CTTTCCCGGGTTSTTS--SS--TTT-TT---S--SSSS-HHHHHHHHHHHHHHHTS---EEEEEE
T ss_pred hhh------------ccCcHHHhchhhhcCCcCCCCCcccCCCCc-ccCCccHhHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 987 455554322 222231112211 1222 3579999999999999999999999999999999
Q ss_pred CccccchhHHHHHHHHHHCCCCeEEEEecCCccccccccccc-------CCc--------------------hHHh----
Q 018967 201 DGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAA-------KSP--------------------SYYK---- 249 (348)
Q Consensus 201 DGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~-------~~~--------------------~~~~---- 249 (348)
|||+.-|..+||||-|...+-++|+|++||+.+|+.+....+ ..+ .+.+
T Consensus 142 DGalt~Gma~EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~ 221 (270)
T PF13292_consen 142 DGALTGGMAFEALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKE 221 (270)
T ss_dssp TTGGGSHHHHHHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC------------------------------------
T ss_pred CcchhHHHHHHHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 999999999999999999999999999999999876532100 000 0000
Q ss_pred --hc--------CCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 250 --RG--------DYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 250 --~g--------~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
++ .|+.++ .|||||..++.++++.+++. +||+||++.|
T Consensus 222 s~K~~~~~lFe~LG~~Y~GPiDGHdl~~Li~~l~~~K~~---~gPvllHV~T 270 (270)
T PF13292_consen 222 SLKGFSPNLFEELGFDYIGPIDGHDLEELIEVLENAKDI---DGPVLLHVIT 270 (270)
T ss_dssp -------CCCHHCT-EEEEEEETT-HHHHHHHHHHHCCS---SSEEEEEEE-
T ss_pred hhhhhhHHHHHHcCCeEEeccCCCCHHHHHHHHHHHhcC---CCCEEEEEeC
Confidence 01 244444 78999999999999887753 9999999987
No 41
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.77 E-value=1.4e-17 Score=169.15 Aligned_cols=228 Identities=21% Similarity=0.254 Sum_probs=165.5
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCEEEc--CCcch
Q 018967 48 HQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRDH 124 (348)
Q Consensus 48 ~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~-~~D~i~~--~yR~~ 124 (348)
..+..|.+...||.+||.++-. .+|.+-.. ...+ .+|..-+..|---..+++...++ |.|.++. .|...
T Consensus 6 ~~i~~P~dLk~ls~~eL~~La~---EiR~~li~--~vS~---~GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaY 77 (627)
T COG1154 6 DKINSPADLKKLSIEELPQLAD---EIREFLLE--VVSA---TGGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAY 77 (627)
T ss_pred hhcCCHHHHhhCCHHHHHHHHH---HHHHHHHH--Hhcc---CCCccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccc
Confidence 4556788888999999988865 35543322 2222 35777778899889999999998 7887665 79999
Q ss_pred HHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCC---CCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCC
Q 018967 125 CTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKK---DSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGD 201 (348)
Q Consensus 125 ~~~l~~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~---~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GD 201 (348)
.|-+..|.. +-|..+- -.+|-.-+..+ ++.+ ...|+-+..++.|+|+|.|..++++++.||+++||
T Consensus 78 pHKiLTGR~--e~f~tlR--------q~~GlsGf~~r~ESe~D~-f~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGD 146 (627)
T COG1154 78 PHKILTGRR--EQFDTLR--------QKDGLSGFPKREESEHDW-FGVGHSSTSISAALGMAKARDLKGEDRNVVAVIGD 146 (627)
T ss_pred hhHHhcCch--hhcchhh--------hcCCCCCCCCcccCCCcc-cccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECC
Confidence 998865543 2222221 11111111111 1222 36899999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHH-HCCCCeEEEEecCCccccccccccc-------CCc----------------------------
Q 018967 202 GAANQGQLFEALNIAA-LWDLPAILVCENNHYGMGTAEWRAA-------KSP---------------------------- 245 (348)
Q Consensus 202 Ga~~~G~~~Ealn~Aa-~~~LPvI~Vv~NN~~~i~~~~~~~~-------~~~---------------------------- 245 (348)
||+.-|..+||||.|+ ..+-|+|+|++||+.+|+.+....+ ..+
T Consensus 147 GAlt~GmA~EALN~ag~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e 226 (627)
T COG1154 147 GALTGGMAFEALNNAGADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAE 226 (627)
T ss_pred ccccchHHHHHHhhhhhccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 9999999999999998 5567899999999999986543100 000
Q ss_pred -----------hHHhhcCCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018967 246 -----------SYYKRGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (348)
Q Consensus 246 -----------~~~~~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~ 299 (348)
-|.. +|+.++ .|||||++++..+++.+++. ++|+||++.|-++.|...+
T Consensus 227 ~~~K~l~~~~~lFee--lGf~YiGPiDGHni~~Li~~Lk~~kd~---~gPvllHv~T~KGKGY~pA 287 (627)
T COG1154 227 ESIKGLLVPGTLFEE--LGFNYIGPIDGHNLEELIPTLKNAKDL---KGPVLLHVVTKKGKGYKPA 287 (627)
T ss_pred HhhhcccCchhhHHH--hCCeeECCcCCCCHHHHHHHHHHHhcC---CCCEEEEEEecCCCCCChh
Confidence 1111 233333 68999999999999888763 9999999999999998754
No 42
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.76 E-value=2.3e-16 Score=169.18 Aligned_cols=132 Identities=22% Similarity=0.201 Sum_probs=109.7
Q ss_pred CccCCCccccchhHHHHHHHHHHHh-------CCCCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCcccc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKY-------SKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMG 235 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~-------~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~ 235 (348)
++..++|+||.+++.|+|.|++.|| ...++.|+|++|||+++||++|||+.+|+.++|. +||||++|...+.
T Consensus 197 ~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lD 276 (896)
T PRK13012 197 FWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLD 276 (896)
T ss_pred CEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCcccc
Confidence 3556799999999999999999994 4566889999999999999999999999999998 6799999999877
Q ss_pred cccccccC-CchHHh--hcCCcceEEE--------------------------c--------------------------
Q 018967 236 TAEWRAAK-SPSYYK--RGDYVPGLKV--------------------------D-------------------------- 260 (348)
Q Consensus 236 ~~~~~~~~-~~~~~~--~g~gipg~~V--------------------------D-------------------------- 260 (348)
.+...... ..++.+ +|+|...++| |
T Consensus 277 G~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~ 356 (896)
T PRK13012 277 GPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELA 356 (896)
T ss_pred CccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHH
Confidence 76654322 123333 3566666888 8
Q ss_pred -----------------CCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCC
Q 018967 261 -----------------GMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS 297 (348)
Q Consensus 261 -----------------G~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs 297 (348)
|||+.+|++|++.|++. +++|++|.++|.+.+|-+
T Consensus 357 ~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~~--~~~PtvIla~TvkG~G~~ 408 (896)
T PRK13012 357 ALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVRH--KGQPTVILAKTKKGYGMG 408 (896)
T ss_pred HHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHhC--CCCCEEEEEEeeecCCCC
Confidence 99999999999988863 368999999999999976
No 43
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.74 E-value=1.1e-17 Score=151.66 Aligned_cols=119 Identities=23% Similarity=0.228 Sum_probs=94.9
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Cccccccccc------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR------ 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~~~~------ 240 (348)
+.|.||+++|.|+|+++|. +++.|||++|||++.+. ..| |.+|+++++|+++||.|| +|++......
T Consensus 51 ~~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~ 124 (196)
T cd02013 51 SFGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWGMS-MME-IMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNR 124 (196)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc-HHH-HHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCC
Confidence 4689999999999999885 78899999999999985 444 889999999988776555 5886442111
Q ss_pred ----ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 018967 241 ----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (348)
Q Consensus 241 ----~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (348)
....+||.+. ++|+++++|+ ++.++.+++++|++.++.++|+|||+.+.+..
T Consensus 125 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~p~liev~v~~~~ 182 (196)
T cd02013 125 FVGTELESESFAKIAEACGAKGITVD--KPEDVGPALQKAIAMMAEGKTTVIEIVCDQEL 182 (196)
T ss_pred cccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhcCCCCCeEEEEEEeCccc
Confidence 1234688874 5999999997 68999999999998666699999999986543
No 44
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.73 E-value=1e-16 Score=167.91 Aligned_cols=224 Identities=16% Similarity=0.117 Sum_probs=165.6
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCC-CCCEEEc--CCcc
Q 018967 47 SHQCEAPSRSVETTPKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGIT-KKDSIIT--AYRD 123 (348)
Q Consensus 47 ~~~~e~~~~~~~~s~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~-~~D~i~~--~yR~ 123 (348)
...|+.|.+...|+.+||.++-. .+|.+-.. ... .+.+|.+-++.|---+.+++...++ |.|.|+. .|.+
T Consensus 79 L~~i~~P~dlk~L~~~eL~~La~---EiR~~li~--~v~--s~~GGHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~ 151 (701)
T PLN02225 79 LDSIETPLQLKNLSVKELKLLAD---EIRTELHS--VLW--KKTQKSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQT 151 (701)
T ss_pred hhhcCCHHHHhhCCHHHHHHHHH---HHHHHHHH--Hhh--cccCCCcCCCccHHHHHHHHHHHhCCCCCceeecccccc
Confidence 45666788888999999988865 46655332 220 1235777778999999999999998 7898776 7999
Q ss_pred hHHHHhcCCCHHHHHHHHhCCCCCC-CCCCCCCcCCCCC---CCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEe
Q 018967 124 HCTFLGRGGTLLEVFSELMGRKDGC-SHGKGGSMHFYKK---DSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALY 199 (348)
Q Consensus 124 ~~~~l~~G~~~~~~~ael~g~~~g~-~~G~ggs~h~~~~---~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~ 199 (348)
..|-|..|.. ..+ ++-.+|-.-+..+ ++.. .+.||-+..+++|+|+|.|..++++++.||+++
T Consensus 152 Y~HKiLTGR~------------~~f~~Rq~~GlsGf~~r~ES~~D~-f~~GHssTSiSaalG~a~ardl~g~~~~vvaVI 218 (701)
T PLN02225 152 YAHKVLTRRW------------SAIPSRQKNGISGVTSQLESEYDS-FGTGHGCNSISAGLGLAVARDIKGKRDRVVAVI 218 (701)
T ss_pred chhhHhcCCh------------hhcCccccCCcCCCCCCCCCCCCC-CCCChHHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 9999865543 211 1112222222221 1222 368999999999999999999999999999999
Q ss_pred CCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccc--------ccccc-----------------------------
Q 018967 200 GDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTA--------EWRAA----------------------------- 242 (348)
Q Consensus 200 GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~--------~~~~~----------------------------- 242 (348)
||||+.-|+.+||||-|+..+-++|+|++||+.+|+.+ ....+
T Consensus 219 GDGaltgGma~EaLN~~g~~~~~livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~ 298 (701)
T PLN02225 219 DNATITAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKG 298 (701)
T ss_pred cCcchhhhhHHHHHhhhhccCCCEEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999999999999999998877 21000
Q ss_pred -----------------C-C-chHHhhcCCcceE-EEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCC
Q 018967 243 -----------------K-S-PSYYKRGDYVPGL-KVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294 (348)
Q Consensus 243 -----------------~-~-~~~~~~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~ 294 (348)
+ . .-|.. +|+.++ .|||||+.++.++++.+++. . +||+||+++|-+..
T Consensus 299 ~~~~~~~~~~~~k~~~~~~~~~lFe~--lG~~Y~GpvDGHdi~~Li~~l~~~k~~--~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 299 MYEWAAKVDEYARGMVGPTGSTLFEE--LGLYYIGPVDGHNIEDLVCVLREVSSL--DSMGPVLVHVITEENR 367 (701)
T ss_pred HHHHHHHHHHHhhhccCCCccCcHHH--cCCeEECccCCCCHHHHHHHHHHHHcC--CCCCCEEEEEEecCCC
Confidence 0 0 01111 233333 68999999999999998864 2 49999999998876
No 45
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.72 E-value=4.1e-17 Score=144.45 Aligned_cols=113 Identities=22% Similarity=0.227 Sum_probs=90.3
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Cccccccccc-----
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR----- 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~~~~----- 240 (348)
+..|.+|+++|.|+|+++|. ++++|||++|||++++. .++|++|++++||+++||.|| +|++......
T Consensus 45 ~~~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~ 118 (172)
T cd02004 45 GTFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGL 118 (172)
T ss_pred CCCCcccchHHHHHHHHHhC----CCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccC
Confidence 35689999999999999885 68899999999999975 466999999999987666555 5887653222
Q ss_pred ------ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 241 ------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 241 ------~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
....+||.+. ++|+++.+|+ +++++.++++++.+. ++|+|||+.+
T Consensus 119 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~i 171 (172)
T cd02004 119 GLPVTTLLPDTRYDLVAEAFGGKGELVT--TPEELKPALKRALAS---GKPALINVII 171 (172)
T ss_pred CCceeccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHHc---CCCEEEEEEc
Confidence 1234678774 5999999998 588998898888753 8999999975
No 46
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=7e-16 Score=156.08 Aligned_cols=132 Identities=24% Similarity=0.331 Sum_probs=112.5
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCCC-CcEEEEEeCCccccchhHHHHHHHHHHCCCCe-EEEEecCCcccccccccc
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKD-ETVTFALYGDGAANQGQLFEALNIAALWDLPA-ILVCENNHYGMGTAEWRA 241 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~-~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPv-I~Vv~NN~~~i~~~~~~~ 241 (348)
++..++|++|++++.|+|+|++.|+.+. ++.|+|++|||++++|+.|||+++|+.|+|.. |+|.+||+.+++.+.+..
T Consensus 112 ~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~ 191 (632)
T KOG0523|consen 112 GVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLG 191 (632)
T ss_pred CceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEccccccCCCCCccc
Confidence 4556789999999999999999999988 89999999999999999999999999999995 577778889998877665
Q ss_pred cCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCC
Q 018967 242 AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS 297 (348)
Q Consensus 242 ~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs 297 (348)
+..+-+..| ++|+..+.|||+|++++.+++..|+.- +++|++|-+.|+...|-.
T Consensus 192 ~~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~~~--k~kpt~i~~~t~~g~G~~ 247 (632)
T KOG0523|consen 192 FDEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAKSV--KGKPTAIKATTFIGRGSP 247 (632)
T ss_pred ccccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhhhc--cCCceeeeeeeeeecCcc
Confidence 544333323 478888999999999999999998841 388999999999988754
No 47
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.70 E-value=4e-15 Score=159.25 Aligned_cols=226 Identities=22% Similarity=0.184 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCh-hHHHHHHHHhcCCC------CCEEEcCCcchHHHH-----
Q 018967 61 PKELLSFFRQMATMRRMEIAADSLYKAKLVRGFCHLYDG-QEAVAIGMEAGITK------KDSIITAYRDHCTFL----- 128 (348)
Q Consensus 61 ~e~l~~~y~~M~~~R~~e~~~~~l~~~g~~~gf~h~~~G-qEa~~vg~~~~l~~------~D~i~~~yR~~~~~l----- 128 (348)
+.++.+.....++...++.-........++.|+-.++.+ -+-..++....|+. +|+|+. .+|+...
T Consensus 77 ~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D~V~s--kGHasp~lYA~~ 154 (891)
T PRK09405 77 DLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSATLYEVGFNHFFRAPNEPHGGDLVFF--QGHASPGIYARA 154 (891)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCCCCCCCCCCEEEE--CchHHHHHHHHH
Confidence 455655555555555444332221111123343222222 23335555666764 687775 3555322
Q ss_pred -hcCC-CHHHHHHHHhCCCCCCCCCCCCCc--CCCC-CCCCccCCCccccchhHHHHHHHHHHHh-------CCCCcEEE
Q 018967 129 -GRGG-TLLEVFSELMGRKDGCSHGKGGSM--HFYK-KDSGFYGGHGIVGAQIPLGCGLAFAQKY-------SKDETVTF 196 (348)
Q Consensus 129 -~~G~-~~~~~~ael~g~~~g~~~G~ggs~--h~~~-~~~~~~~~~g~lG~~lp~A~G~A~A~k~-------~~~~~~vv 196 (348)
..|. +.++ +..+ .+. +.|.+-+. |... |+ .+...++++|.+++.|+|.|++.|| .+.++.|+
T Consensus 155 ~l~G~l~~e~-L~~f-R~~---~~g~gl~syPhp~~~p~-~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~ 228 (891)
T PRK09405 155 FLEGRLTEEQ-LDNF-RQE---VDGKGLSSYPHPWLMPD-FWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVW 228 (891)
T ss_pred HHcCCCCHHH-HHHh-cCC---CCCCCCCCCCCcCCCCC-CeecCccccchhHHHHHHHHHhCccccccccccCCCceEE
Confidence 2453 3333 2222 222 11222223 3221 22 2455789999999999999999995 45678999
Q ss_pred EEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCcccccccccccC-CchHHh--hcCCcceEEE-------------
Q 018967 197 ALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAAK-SPSYYK--RGDYVPGLKV------------- 259 (348)
Q Consensus 197 ~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~~~~~~~~~-~~~~~~--~g~gipg~~V------------- 259 (348)
|++|||+++||++|||+.+|+.++|. +|+||++|...+..+...... ..++.+ +|+|...++|
T Consensus 229 ~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d 308 (891)
T PRK09405 229 AFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKD 308 (891)
T ss_pred EEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhccC
Confidence 99999999999999999999999998 679999999988776653211 223433 3566666888
Q ss_pred -------------c-------------------------------------------CCCHHHHHHHHHHHHHHhccCCC
Q 018967 260 -------------D-------------------------------------------GMDALAVKQACKFAKEHALKNGP 283 (348)
Q Consensus 260 -------------D-------------------------------------------G~D~~av~~a~~~A~~~ar~~gP 283 (348)
| |||+.+|++|++.|++. +++|
T Consensus 309 ~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~~--~~~P 386 (891)
T PRK09405 309 TSGKLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVEH--KGQP 386 (891)
T ss_pred CccHHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHhC--CCCC
Confidence 4 99999999999998863 3789
Q ss_pred EEEEEEEecCCCC
Q 018967 284 MILEMDTYRYHGH 296 (348)
Q Consensus 284 ~lIe~~t~R~~GH 296 (348)
++|.++|.+.+|.
T Consensus 387 tvIia~TvkG~G~ 399 (891)
T PRK09405 387 TVILAKTIKGYGM 399 (891)
T ss_pred EEEEEeceecCCC
Confidence 9999999999998
No 48
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.70 E-value=1e-16 Score=142.36 Aligned_cols=110 Identities=25% Similarity=0.316 Sum_probs=89.9
Q ss_pred ccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc--------
Q 018967 170 GIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR-------- 240 (348)
Q Consensus 170 g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~-------- 240 (348)
|.+|+++|.|+|+++|. +++.+||++|||+++++. ++|.+|+++++|+++||.||+ |++.+....
T Consensus 49 g~mG~~lp~aiGaala~----~~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~ 122 (178)
T cd02002 49 GGLGWGLPAAVGAALAN----PDRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPG 122 (178)
T ss_pred ccccchHHHHHHHHhcC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcc
Confidence 99999999999999985 578999999999999874 569999999999998888886 887542111
Q ss_pred ---------ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 241 ---------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 241 ---------~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
....+||.+. ++|+++++|++ +.++.+++++|++ .++|+|||+.+
T Consensus 123 ~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~---~~~p~vi~v~v 178 (178)
T cd02002 123 ENAPDGLDLLDPGIDFAAIAKAFGVEAERVET--PEELDEALREALA---EGGPALIEVVV 178 (178)
T ss_pred cccccccccCCCCCCHHHHHHHcCCceEEeCC--HHHHHHHHHHHHh---CCCCEEEEEEC
Confidence 0123577774 59999999985 8899999998875 38999999864
No 49
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.70 E-value=1.1e-16 Score=139.85 Aligned_cols=114 Identities=25% Similarity=0.328 Sum_probs=91.2
Q ss_pred cCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccc-----
Q 018967 166 YGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEW----- 239 (348)
Q Consensus 166 ~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~----- 239 (348)
.+..|++|.++|.|+|++++. +++.+|+++|||++.+ ..+++++|+.+++|+++||.||++ ++.....
T Consensus 42 ~~~~g~~G~~~~~a~Gaa~a~----~~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~ 115 (168)
T cd00568 42 STGFGAMGYGLPAAIGAALAA----PDRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYG 115 (168)
T ss_pred CCCchhhhhhHHHHHHHHHhC----CCCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcC
Confidence 456799999999999999986 5789999999999998 468899999999999988888885 5433221
Q ss_pred -----cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 240 -----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 240 -----~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
.....+++.+. ++|+++++|++ +.++.++++++.+ .++|+|||+.|
T Consensus 116 ~~~~~~~~~~~d~~~~a~~~G~~~~~v~~--~~~l~~a~~~a~~---~~~p~~i~v~~ 168 (168)
T cd00568 116 GRVSGTDLSNPDFAALAEAYGAKGVRVED--PEDLEAALAEALA---AGGPALIEVKT 168 (168)
T ss_pred CCcccccCCCCCHHHHHHHCCCeEEEECC--HHHHHHHHHHHHh---CCCCEEEEEEC
Confidence 22234577774 58999999974 7888888888774 38999999975
No 50
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.69 E-value=1.8e-16 Score=144.13 Aligned_cols=117 Identities=25% Similarity=0.248 Sum_probs=93.4
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------ 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~------ 240 (348)
..|++|+++|.|+|+++|. +++.|||++|||++++. . .+|.+|++++||+++||.||+ |++......
T Consensus 55 ~~GsmG~~lpaaiGa~la~----p~~~vv~i~GDG~f~m~-~-~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~ 128 (202)
T cd02006 55 QAGPLGWTVPAALGVAAAD----PDRQVVALSGDYDFQFM-I-EELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDY 128 (202)
T ss_pred CccchhhhhHHHHhHHhhC----CCCeEEEEEeChHhhcc-H-HHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCcc
Confidence 4699999999999999885 78899999999999885 3 449999999999887777776 776432110
Q ss_pred --------------ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 018967 241 --------------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (348)
Q Consensus 241 --------------~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R 292 (348)
....+||.+. ++|+++.+|+ ++.++.+++++|++.+++ ++|+|||+.+-+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~~p~liev~i~~ 195 (202)
T cd02006 129 QVNLAFENINSSELGGYGVDHVKVAEGLGCKAIRVT--KPEELAAAFEQAKKLMAEHRVPVVVEAILER 195 (202)
T ss_pred ccccccccccccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHHhcccCCCcEEEEEEecc
Confidence 0013688874 5999999996 688999999999875544 899999999854
No 51
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.66 E-value=1.3e-15 Score=135.82 Aligned_cols=116 Identities=19% Similarity=0.120 Sum_probs=89.7
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc-----
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~----- 240 (348)
...|.+|+++|.|+|+++|. +++.||++.|||++.+.. .++|.+|+++++|+++||.||+ |++......
T Consensus 48 ~~~g~mG~gl~~AiGa~la~----p~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~ 122 (178)
T cd02008 48 DTCTCMGASIGVAIGMAKAS----EDKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGK 122 (178)
T ss_pred cccccCccHHHHHhhHHhhC----CCCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcc
Confidence 35799999999999999986 578899999999997532 5679999999999876666555 675432211
Q ss_pred ----ccCCchHHhh--cCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 241 ----AAKSPSYYKR--GDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 241 ----~~~~~~~~~~--g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
....+||.+. ++|+++++| ++.|..++.+++++|++ .++|+||++..
T Consensus 123 ~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~~~~al~~a~~---~~gp~lI~v~~ 176 (178)
T cd02008 123 TLTEPTTVIDIEALVRAIGVKRVVVVDPYDLKAIREELKEALA---VPGVSVIIAKR 176 (178)
T ss_pred cccCCCCccCHHHHHHHCCCCEEEecCccCHHHHHHHHHHHHh---CCCCEEEEEeC
Confidence 0123578774 599999998 77888888889988875 38999999864
No 52
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.66 E-value=7.2e-16 Score=137.45 Aligned_cols=115 Identities=25% Similarity=0.325 Sum_probs=91.2
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------ 239 (348)
++.|.+|+++|.|+|+++|. +++.+|+++|||+++++ +.| |.+|+++++|+++||.||+ |++.+...
T Consensus 48 ~~~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~ 121 (178)
T cd02014 48 GLLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQP 121 (178)
T ss_pred CCCchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCC
Confidence 34699999999999998875 67899999999999987 566 8889999999988888886 78743211
Q ss_pred ---cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 ---RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ---~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....+||.+. ++|+++.+|+ ++.++.++++++++ .++|+|||+.+.+
T Consensus 122 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~~l~~a~~---~~~p~liev~~~~ 174 (178)
T cd02014 122 EFGVDLPNPDFAKIAEAMGIKGIRVE--DPDELEAALDEALA---ADGPVVIDVVTDP 174 (178)
T ss_pred ceeccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCC
Confidence 01124578774 5999999997 67888888888775 3899999999854
No 53
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.65 E-value=6.8e-16 Score=138.46 Aligned_cols=114 Identities=27% Similarity=0.416 Sum_probs=89.0
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------cc
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------WR 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------~~ 240 (348)
+.|.+|+++|.|+|+++|. +++.||+++|||++++. + .+|.+|+++++|+++||.||+ |++.... +.
T Consensus 48 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~~~-~-~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~ 121 (186)
T cd02015 48 GLGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQMN-I-QELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGR 121 (186)
T ss_pred CccchhchHHHHHHHHHhC----CCCeEEEEEcccHHhcc-H-HHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCc
Confidence 4589999999999999885 67899999999999874 3 449999999999987777776 5653211 10
Q ss_pred -----ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 -----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 -----~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
....+||.+. ++|+++++|++ +.++.+++++|.+ .++|+|||+.+.+
T Consensus 122 ~~~~~~~~~~d~~~~a~a~G~~~~~v~~--~~el~~al~~a~~---~~~p~liev~~~~ 175 (186)
T cd02015 122 YSHTTLDSNPDFVKLAEAYGIKGLRVEK--PEELEAALKEALA---SDGPVLLDVLVDP 175 (186)
T ss_pred eeeccCCCCCCHHHHHHHCCCceEEeCC--HHHHHHHHHHHHh---CCCCEEEEEEeCC
Confidence 1134678774 59999999985 7788888887765 3899999999864
No 54
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.65 E-value=1e-15 Score=136.56 Aligned_cols=115 Identities=17% Similarity=0.267 Sum_probs=90.6
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------ 239 (348)
++.|.+|+++|.|+|+++|. +++.||+++|||++.+.. ..|.+|+++++|+++||.||+ |++....+
T Consensus 45 ~~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~m~~--~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~ 118 (177)
T cd02010 45 NGLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMNS--QELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGR 118 (177)
T ss_pred CCChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhHH--HHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 35689999999999999985 788999999999998753 459999999999876665555 87643211
Q ss_pred ---cccCCchHHh--hcCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 ---RAAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ---~~~~~~~~~~--~g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....+||.+ +++|+++.+|+ +++++.+++++|++ .++|+|||+.+-+
T Consensus 119 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~liev~~~~ 171 (177)
T cd02010 119 DSGVDFGNPDFVKYAESFGAKGYRIE--SADDLLPVLERALA---ADGVHVIDCPVDY 171 (177)
T ss_pred cccCcCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEecc
Confidence 0112457877 45999999996 79999999999986 3899999999854
No 55
>PRK06163 hypothetical protein; Provisional
Probab=99.64 E-value=3e-15 Score=136.45 Aligned_cols=129 Identities=20% Similarity=0.236 Sum_probs=98.0
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHC-CCCeEEEEecCC-ccccccccc-ccCCc
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW-DLPAILVCENNH-YGMGTAEWR-AAKSP 245 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~-~LPvI~Vv~NN~-~~i~~~~~~-~~~~~ 245 (348)
.|.+|+++|.|+|+++|. +++.|||++|||++++. ..+|.+++++ ++|+++||.||+ |++...... ....+
T Consensus 56 ~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~ 129 (202)
T PRK06163 56 LGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLLMQ--LGALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTV 129 (202)
T ss_pred ecccccHHHHHHHHHHhC----CCCeEEEEEcchHHHHH--HHHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCC
Confidence 689999999999999985 78899999999999875 3458888876 789887777775 886332111 12346
Q ss_pred hHHhh--cCCcc-eEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHH
Q 018967 246 SYYKR--GDYVP-GLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEISG 313 (348)
Q Consensus 246 ~~~~~--g~gip-g~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~ 313 (348)
||.+. ++|++ +++|+ ++.++..+++++++ .++|+|||+.+.+. .+.+...|++.|++.
T Consensus 130 Df~~lA~a~G~~~~~~v~--~~~el~~al~~a~~---~~~p~lIeV~i~~~-----~~~~~~~~~~~~~~~ 190 (202)
T PRK06163 130 DVVAIARGAGLENSHWAA--DEAHFEALVDQALS---GPGPSFIAVRIDDK-----PGVGTTERDPAQIRE 190 (202)
T ss_pred CHHHHHHHCCCceEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEecCC-----CCCCCCCCCHHHHHH
Confidence 88874 58997 67885 78899999999885 39999999998643 233445688887764
No 56
>PRK05261 putative phosphoketolase; Provisional
Probab=99.64 E-value=3.6e-15 Score=157.85 Aligned_cols=199 Identities=19% Similarity=0.175 Sum_probs=142.4
Q ss_pred ccccccCCChhHHHHHHHHhcCCCC--CEEEcCCcchHHHHh------cC--------CCHHHH-HHHHhCCCCCCCCCC
Q 018967 90 VRGFCHLYDGQEAVAIGMEAGITKK--DSIITAYRDHCTFLG------RG--------GTLLEV-FSELMGRKDGCSHGK 152 (348)
Q Consensus 90 ~~gf~h~~~GqEa~~vg~~~~l~~~--D~i~~~yR~~~~~l~------~G--------~~~~~~-~ael~g~~~g~~~G~ 152 (348)
..|.+-.+.|+--+-+.+-..+++. |.++-.--||+.... -| ++..+. |..+|-+- ++ .|
T Consensus 48 ~~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqf-s~-pg- 124 (785)
T PRK05261 48 LLGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQF-SF-PG- 124 (785)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhc-cC-CC-
Confidence 4577777888988877776666664 544443345664332 35 333221 22222211 11 11
Q ss_pred CCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhH---HHHHHHHHHCCCC-eEEEEe
Q 018967 153 GGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQL---FEALNIAALWDLP-AILVCE 228 (348)
Q Consensus 153 ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~---~Ealn~Aa~~~LP-vI~Vv~ 228 (348)
|.+.|......|+...+|.||+++++|+|+|+. +++.+++|++|||++++|.+ |++.+++.-.++. ++.|++
T Consensus 125 g~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld 200 (785)
T PRK05261 125 GIPSHAAPETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILH 200 (785)
T ss_pred CcCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEE
Confidence 346788765568899999999999999999965 47889999999999999984 7777777777777 568888
Q ss_pred cCCccccccccccc-CCchHHh--hcCCcceEEEcCCCHHHHHHHHHHHHHHhcc---------------CCCE--EEEE
Q 018967 229 NNHYGMGTAEWRAA-KSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALK---------------NGPM--ILEM 288 (348)
Q Consensus 229 NN~~~i~~~~~~~~-~~~~~~~--~g~gipg~~VDG~D~~av~~a~~~A~~~ar~---------------~gP~--lIe~ 288 (348)
+|+|+|+++..... ...++.+ +|||++.+.|||+|+.++.+++++|++.+-+ .+|. +|.+
T Consensus 201 ~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~ 280 (785)
T PRK05261 201 LNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVL 280 (785)
T ss_pred ecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEE
Confidence 99999999887543 3356665 4699999999999999999887766654322 3788 9999
Q ss_pred EEecCCC
Q 018967 289 DTYRYHG 295 (348)
Q Consensus 289 ~t~R~~G 295 (348)
+|.+++|
T Consensus 281 rT~kG~g 287 (785)
T PRK05261 281 RTPKGWT 287 (785)
T ss_pred ECCccCC
Confidence 9999887
No 57
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.64 E-value=4.3e-15 Score=132.90 Aligned_cols=126 Identities=23% Similarity=0.221 Sum_probs=93.2
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCC-CeE-EEEecCCccccccccccc-CCc
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDL-PAI-LVCENNHYGMGTAEWRAA-KSP 245 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~L-PvI-~Vv~NN~~~i~~~~~~~~-~~~ 245 (348)
.|++|+++|.|+|+|+|.+ +.|||++|||++.++ ..++.+++.+++ |++ +|++||+|++........ ..+
T Consensus 41 ~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~~~~~~~~ 113 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTGNQPTHAGKKT 113 (179)
T ss_pred ccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccCCCCCCCCCCC
Confidence 7999999999999999852 789999999999764 245888899995 665 555666788754332222 246
Q ss_pred hHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCCHHHH
Q 018967 246 SYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 311 (348)
Q Consensus 246 ~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~ 311 (348)
||.+. ++|+++.+|+| ++.++.+++++++ ++|+|||+.|.+..+ + . +..++++.++
T Consensus 114 d~~~lA~a~G~~~~~v~~-~~~el~~al~~a~-----~gp~lIev~~~~~~~-~--~-~~~~~~~~~~ 171 (179)
T cd03372 114 DLEAVAKACGLDNVATVA-SEEAFEKAVEQAL-----DGPSFIHVKIKPGNT-D--V-PNIPRDPVEI 171 (179)
T ss_pred CHHHHHHHcCCCeEEecC-CHHHHHHHHHHhc-----CCCEEEEEEEcCCCC-C--C-CCCCCCHHHH
Confidence 78774 59999999987 7888888887765 789999999965443 1 1 2345555544
No 58
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.63 E-value=4.8e-15 Score=133.66 Aligned_cols=130 Identities=18% Similarity=0.095 Sum_probs=95.9
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCC-CeEEEEecCC-cccccccccccCCch
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDL-PAILVCENNH-YGMGTAEWRAAKSPS 246 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~L-PvI~Vv~NN~-~~i~~~~~~~~~~~~ 246 (348)
+|.+|+++|.|+|+++|. +++.|||++|||++.+. .++|.+++++++ |+++||.||+ |++..........+|
T Consensus 47 ~g~mG~~lpaAiGaala~----p~~~Vv~i~GDG~f~m~--~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~~~~~~~~d 120 (188)
T cd03371 47 VGSMGHASQIALGIALAR----PDRKVVCIDGDGAALMH--MGGLATIGGLAPANLIHIVLNNGAHDSVGGQPTVSFDVS 120 (188)
T ss_pred cCccccHHHHHHHHHHhC----CCCcEEEEeCCcHHHhh--ccHHHHHHHcCCCCcEEEEEeCchhhccCCcCCCCCCCC
Confidence 499999999999999985 67889999999999763 356999999997 5776666666 776432222223468
Q ss_pred HHhh--cCCcce-EEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCCHHHHH
Q 018967 247 YYKR--GDYVPG-LKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 312 (348)
Q Consensus 247 ~~~~--g~gipg-~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~ 312 (348)
|.+. ++|+++ .+|+ ++.++.+++++|++ .++|+|||+.+-+..+ +.. ...++++.+++
T Consensus 121 ~~~~A~a~G~~~~~~v~--~~~el~~al~~a~~---~~~p~lIev~~~~~~~-~~~--~~~~~~~~~~~ 181 (188)
T cd03371 121 LPAIAKACGYRAVYEVP--SLEELVAALAKALA---ADGPAFIEVKVRPGSR-SDL--GRPTTSPIENK 181 (188)
T ss_pred HHHHHHHcCCceEEecC--CHHHHHHHHHHHHh---CCCCEEEEEEecCCCC-CCC--CCCCCCHHHHH
Confidence 8874 589987 4786 79999999998875 3899999999966543 222 22356666554
No 59
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.62 E-value=2.6e-15 Score=136.92 Aligned_cols=116 Identities=21% Similarity=0.164 Sum_probs=90.0
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Cccccccccc-----
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR----- 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~~~~----- 240 (348)
++.|.||+++|.|+|+++|. +++.||++.|||++.++. .+|.+|+++++|+++||.|| +|++......
T Consensus 45 ~~~gsmG~~lpaAiGa~la~----p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~ 118 (205)
T cd02003 45 YGYSCMGYEIAAGLGAKLAK----PDREVYVLVGDGSYLMLH--SEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSG 118 (205)
T ss_pred CCcchhhhHHHHHHHHHHhC----CCCeEEEEEccchhhccH--HHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCc
Confidence 35699999999999999885 788999999999998853 35999999999987555555 5776331100
Q ss_pred ------------------ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018967 241 ------------------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (348)
Q Consensus 241 ------------------~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (348)
....+||.+. ++|+++.+|+ +++++.+|+++|++ .++|+|||+.+-+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~lIeV~v~~~ 186 (205)
T cd02003 119 SFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVK--TIEELKAALAKAKA---SDRTTVIVIKTDPK 186 (205)
T ss_pred cccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEeecc
Confidence 0123678774 5999999995 79999999999875 38999999999653
No 60
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.62 E-value=1.5e-15 Score=131.79 Aligned_cols=113 Identities=29% Similarity=0.459 Sum_probs=90.2
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------ 239 (348)
...+.+|+++|.|+|+++| .+++.||+++|||++.+. .. +|.+|+++++|+++||.||+ |++.....
T Consensus 25 ~~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~~-~~-el~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~ 98 (153)
T PF02775_consen 25 GGFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLMS-LQ-ELATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGG 98 (153)
T ss_dssp TTTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHHH-GG-GHHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTST
T ss_pred CCccccCCHHHhhhHHHhh----cCcceeEEecCCcceeec-cc-hhHHHhhccceEEEEEEeCCcceEeccccccCcCc
Confidence 3579999999999999998 478999999999999876 34 49999999999887776666 67643221
Q ss_pred ----cc---cCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 240 ----RA---AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 240 ----~~---~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
.. ...+||.+. ++|+++.+|+..|++++.+++++|++ .+||+|||+
T Consensus 99 ~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~~---~~gp~vIeV 153 (153)
T PF02775_consen 99 RFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEELEEALREALE---SGGPAVIEV 153 (153)
T ss_dssp CHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHHH---SSSEEEEEE
T ss_pred ccccccccccccCCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHHh---CCCcEEEEc
Confidence 01 345678774 59999999987777999999999995 499999996
No 61
>PRK07524 hypothetical protein; Provisional
Probab=99.60 E-value=4e-15 Score=153.65 Aligned_cols=117 Identities=27% Similarity=0.329 Sum_probs=95.5
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Ccccccc---------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTA--------- 237 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~--------- 237 (348)
+.|.+|+++|.|+|+++|. +++.|||++|||++++. ..| |.+|++++||+++||.|| .|++...
T Consensus 405 ~~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~~ 478 (535)
T PRK07524 405 GYGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQFT-LPE-LASAVEADLPLIVLLWNNDGYGEIRRYMVARDIEP 478 (535)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCCc
Confidence 4699999999999999985 78899999999999875 455 999999999998877777 5875421
Q ss_pred cccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 018967 238 EWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (348)
Q Consensus 238 ~~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (348)
.......+||.+. ++|+++++|+ ++.++.++++++++. ++|+|||+.++|+.+
T Consensus 479 ~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~~---~~p~liev~~~~~~~ 533 (535)
T PRK07524 479 VGVDPYTPDFIALARAFGCAAERVA--DLEQLQAALRAAFAR---PGPTLIEVDQACWFA 533 (535)
T ss_pred cccCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHhC---CCCEEEEEECCcccc
Confidence 1112234688874 5999999996 799999999988863 999999999999876
No 62
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.60 E-value=1.6e-14 Score=129.56 Aligned_cols=111 Identities=23% Similarity=0.287 Sum_probs=86.6
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCC-CCeEEEEecCC-ccccccccccc-CCc
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWD-LPAILVCENNH-YGMGTAEWRAA-KSP 245 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~-LPvI~Vv~NN~-~~i~~~~~~~~-~~~ 245 (348)
.|.+|.++|.|+|+++|. ++.|||+.|||++.++. +++.+|+.++ +|+++||.||+ |++...+.... ..+
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~~--~el~ta~~~~~~pv~~vV~NN~~yg~~~~q~~~~~~~~ 113 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMNL--GVLPTIAAESPKNLILVILDNGAYGSTGNQPTPASRRT 113 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhhh--hHHHHHHHhCCCCeEEEEEeCCccccccCcCCCCCCCC
Confidence 799999999999999984 67899999999998763 5599999999 59987777776 77644221111 256
Q ss_pred hHHhh--cCCcceEE-EcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 246 SYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 246 ~~~~~--g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
||.+. ++|+++.+ |+ ++.++.++++ +++ .++|+|||+.+-+
T Consensus 114 d~~~lA~a~G~~~~~~v~--~~~~l~~al~-a~~---~~~p~li~v~~~~ 157 (181)
T TIGR03846 114 DLELVAKAAGIRNVEKVA--DEEELRDALK-ALA---MKGPTFIHVKVKP 157 (181)
T ss_pred CHHHHHHHCCCCeEEEeC--CHHHHHHHHH-HHc---CCCCEEEEEEeCC
Confidence 88874 59999988 74 6889988886 553 3899999999854
No 63
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.60 E-value=8.5e-15 Score=131.36 Aligned_cols=116 Identities=21% Similarity=0.189 Sum_probs=89.7
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeE-EEEecCCccccccccc-----
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAI-LVCENNHYGMGTAEWR----- 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI-~Vv~NN~~~i~~~~~~----- 240 (348)
+..|.+|.++|.|+|+++|. +++.||+++|||++.+. +.| |.+|+++++|++ +|++||+|++......
T Consensus 47 ~~~g~mG~~l~~aiGaala~----~~~~vv~i~GDG~f~~~-~~e-l~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~ 120 (183)
T cd02005 47 PLWGSIGYSVPAALGAALAA----PDRRVILLVGDGSFQMT-VQE-LSTMIRYGLNPIIFLINNDGYTIERAIHGPEASY 120 (183)
T ss_pred cchhhHhhhHHHHHHHHHhC----CCCeEEEEECCchhhcc-HHH-HHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCc
Confidence 35699999999999999885 67899999999999774 567 889999999976 5555556886442111
Q ss_pred -ccCCchHHhh--cCC----cceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 -AAKSPSYYKR--GDY----VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 -~~~~~~~~~~--g~g----ipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
....+||.+. ++| +++.+|+ ++.++.++++++++ +.++|+|||+.+.+
T Consensus 121 ~~~~~~d~~~ia~a~G~~~~~~~~~v~--~~~el~~al~~a~~--~~~~p~liev~~~~ 175 (183)
T cd02005 121 NDIANWNYTKLPEVFGGGGGGLSFRVK--TEGELDEALKDALF--NRDKLSLIEVILPK 175 (183)
T ss_pred ccCCCCCHHHHHHHhCCCccccEEEec--CHHHHHHHHHHHHh--cCCCcEEEEEEcCc
Confidence 1123677774 477 7888885 79999999999987 23899999999864
No 64
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.59 E-value=5.9e-15 Score=129.39 Aligned_cols=111 Identities=20% Similarity=0.158 Sum_probs=87.1
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHC-CCCeEEEEecCC-cccccccccccCCch
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW-DLPAILVCENNH-YGMGTAEWRAAKSPS 246 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~-~LPvI~Vv~NN~-~~i~~~~~~~~~~~~ 246 (348)
.|.+|.++|.|+|+++|. + +.|||+.|||++.+. . .++.+++++ ++|+++||.||+ |++..........+|
T Consensus 41 ~gsmG~~lp~AiGa~~a~----~-~~Vv~i~GDG~f~m~-~-~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~~~~~~~d 113 (157)
T cd02001 41 LGSMGLAGSIGLGLALGL----S-RKVIVVDGDGSLLMN-P-GVLLTAGEFTPLNLILVVLDNRAYGSTGGQPTPSSNVN 113 (157)
T ss_pred ecchhhHHHHHHHHHhcC----C-CcEEEEECchHHHhc-c-cHHHHHHHhcCCCEEEEEEeCccccccCCcCCCCCCCC
Confidence 799999999999999985 2 789999999999764 2 348889888 599887775555 776432222222468
Q ss_pred HHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 247 YYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 247 ~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
|.+. ++|+++++|+ ++.++.+++++|++ .++|+|||+.+.
T Consensus 114 ~~~lA~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~vi~v~i~ 155 (157)
T cd02001 114 LEAWAAACGYLVLSAP--LLGGLGSEFAGLLA---TTGPTLLHAPIA 155 (157)
T ss_pred HHHHHHHCCCceEEcC--CHHHHHHHHHHHHh---CCCCEEEEEEec
Confidence 8874 5999999985 79999999999986 389999999874
No 65
>PRK06154 hypothetical protein; Provisional
Probab=99.57 E-value=1.6e-14 Score=150.29 Aligned_cols=116 Identities=21% Similarity=0.163 Sum_probs=93.1
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc-c----c-
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-W----R- 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~-~----~- 240 (348)
..|+||+++|.|+|+++|. +++.|||++|||++++. . .+|.+|++++||+++||.||+ |++.... . .
T Consensus 429 ~~gsmG~glpaaiGa~la~----p~r~Vv~i~GDG~f~m~-~-~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~ 502 (565)
T PRK06154 429 KTTQLGYGLGLAMGAKLAR----PDALVINLWGDAAFGMT-G-MDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKY 502 (565)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc-H-HHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCcc
Confidence 4689999999999999985 78999999999999885 2 459999999999987777776 7754321 0 0
Q ss_pred --ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 241 --AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 241 --~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
....+||.+. +||+++.+|+ ++.++.+++++|+++.+.++|+|||+.+.
T Consensus 503 ~~~~~~~df~~lA~a~G~~g~~V~--~~~el~~al~~a~~~~~~~~p~lIev~v~ 555 (565)
T PRK06154 503 RATDISGDYAAIARALGGYGERVE--DPEMLVPALLRALRKVKEGTPALLEVITS 555 (565)
T ss_pred cccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhccCCCeEEEEEEeC
Confidence 1113588875 5999999997 79999999999997554588999999884
No 66
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.55 E-value=2.3e-14 Score=149.26 Aligned_cols=114 Identities=25% Similarity=0.348 Sum_probs=91.5
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc-------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------- 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------- 239 (348)
+.|.||+++|.|+|+++|. +++.||+++|||++++. +.| |.+|++++||+++||.||+ |++.....
T Consensus 420 ~~gsmG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~~ 493 (570)
T PRK06725 420 GLGTMGFGFPAAIGAQLAK----EEELVICIAGDASFQMN-IQE-LQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENR 493 (570)
T ss_pred CcccccchhhHHHhhHhhc----CCCeEEEEEecchhhcc-HHH-HHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCCc
Confidence 4599999999999999884 78899999999999765 455 9999999999998888887 66533110
Q ss_pred ---cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 ---RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ---~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....+||.+. ++|+++.+|+ ++.++.++++.|++ .++|+|||+.+-+
T Consensus 494 ~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~---~~~p~liev~id~ 546 (570)
T PRK06725 494 LSESKIGSPDFVKVAEAYGVKGLRAT--NSTEAKQVMLEAFA---HEGPVVVDFCVEE 546 (570)
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCC
Confidence 11124688874 5999999995 78899999988876 3899999999854
No 67
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.55 E-value=2e-14 Score=127.88 Aligned_cols=111 Identities=22% Similarity=0.208 Sum_probs=86.6
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc-------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------- 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------- 239 (348)
+.|.+|+++|.|+|+++|. ++.||+++|||++.+. . .+|.+|+++++|+++||.||+ |++.....
T Consensus 49 g~g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~-~-~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~ 121 (175)
T cd02009 49 GASGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD-L-NGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDE 121 (175)
T ss_pred CccchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHh-H-HHHHhccccCCCeEEEEEECCCCchheeccCCcccch
Confidence 3488999999999999984 6779999999999875 3 459999999999876666665 77532111
Q ss_pred --ccc---CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 240 --RAA---KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 240 --~~~---~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
... ..+||.+. ++|+++++|+ ++.++.+++++|++ .++|+|||+.+
T Consensus 122 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIev~v 174 (175)
T cd02009 122 FERLFGTPQGLDFEHLAKAYGLEYRRVS--SLDELEQALESALA---QDGPHVIEVKT 174 (175)
T ss_pred hhhhhcCCCCCCHHHHHHHcCCCeeeCC--CHHHHHHHHHHHHh---CCCCEEEEEeC
Confidence 011 24678774 5999999996 79999999998875 38999999975
No 68
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=99.54 E-value=2.6e-14 Score=148.78 Aligned_cols=117 Identities=22% Similarity=0.195 Sum_probs=95.1
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Cccccccc--------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAE-------- 238 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~~-------- 238 (348)
+.|.||+++|.|+|+++|. +++.|||++|||+++++...+++++|+++++|+++||.|| +|++....
T Consensus 428 ~~gsmG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~ 503 (569)
T PRK08327 428 SAGGLGWALGAALGAKLAT----PDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEG 503 (569)
T ss_pred CCCCCCcchHHHHHHhhcC----CCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCccc
Confidence 4699999999999998874 7899999999999998754557999999999998888777 58764210
Q ss_pred ---------cccc-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018967 239 ---------WRAA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (348)
Q Consensus 239 ---------~~~~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (348)
.... ..+||.+. ++|+++.+|+ ++.++.+++++|++..++ +||+|||+.+
T Consensus 504 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v 566 (569)
T PRK08327 504 YAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVE--DPEELKGALRRALAAVRKGRRSAVLDVIV 566 (569)
T ss_pred ccccccccccccCCCCCCHHHHHHhCCCCceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 0011 34678774 5999999997 899999999999987666 7899999986
No 69
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.54 E-value=5.7e-14 Score=127.14 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=85.9
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCcc-ccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc-c----
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR-A---- 241 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa-~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~-~---- 241 (348)
.+.+|+++|.|+|+++|. +++.||++.|||+ ++++ ..+|.+|+++++|+++||.||+ |++...... .
T Consensus 50 ~g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f~m~--~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~ 123 (193)
T cd03375 50 HTLHGRALAVATGVKLAN----PDLTVIVVSGDGDLAAIG--GNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEG 123 (193)
T ss_pred hhhhccHHHHHHHHHHhC----CCCeEEEEeccchHhhcc--HHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCC
Confidence 488999999999999885 8899999999999 4554 3459999999999987777776 776442111 0
Q ss_pred -----------cCCchHHhh--cCCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 242 -----------AKSPSYYKR--GDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 242 -----------~~~~~~~~~--g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
...+||.+. ++|++++ ++.-.++.++.+++++|++ .++|+|||+.+
T Consensus 124 ~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~al~---~~gp~vIev~~ 183 (193)
T cd03375 124 FKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQLKEIIKKAIQ---HKGFSFVEVLS 183 (193)
T ss_pred CcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHHHHHHHHHHh---cCCCEEEEEEC
Confidence 012577764 5888885 2233579999999999986 39999999975
No 70
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=99.54 E-value=2.1e-14 Score=150.04 Aligned_cols=117 Identities=26% Similarity=0.237 Sum_probs=92.5
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------ 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~------ 240 (348)
+.|+||+++|.|+|+++|. +++.||+++|||++++. . .+|.+|++++||+++||.||+ |++......
T Consensus 416 ~~gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~m~-~-~EL~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~~ 489 (588)
T TIGR01504 416 QAGPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQFM-I-EELAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMDY 489 (588)
T ss_pred ccccccchHhHHHhhhhhC----CCCcEEEEEcchHhhcc-H-HHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcccc
Confidence 4599999999999999885 78899999999999886 3 459999999999886666665 876431100
Q ss_pred ----cc----------CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 018967 241 ----AA----------KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (348)
Q Consensus 241 ----~~----------~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R 292 (348)
.. ..+||.+. ++|+++.+|+ ++.++.+++++|++.+++ ++|+|||+.+-+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~~~~~~~p~lIeV~i~~ 556 (588)
T TIGR01504 490 CVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVF--KPEEIAPAFEQAKALMAEHRVPVVVEVILER 556 (588)
T ss_pred cceeeccccccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 00 13688874 5999999995 799999999999875433 899999999853
No 71
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=99.54 E-value=4e-14 Score=147.68 Aligned_cols=115 Identities=26% Similarity=0.322 Sum_probs=92.8
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc--------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-------- 238 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~-------- 238 (348)
..|++|+++|.|+|+++|. +++.|||++|||+++++ ..| |.+|+++++|+++||.||+ |++....
T Consensus 406 ~~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~~~-~~e-l~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~ 479 (578)
T PRK06546 406 RHGSMANALPHAIGAQLAD----PGRQVISMSGDGGLSML-LGE-LLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPD 479 (578)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEcCchHhhh-HHH-HHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCc
Confidence 4689999999999999985 78899999999999975 344 8999999999988887777 6764210
Q ss_pred -ccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018967 239 -WRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (348)
Q Consensus 239 -~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (348)
......+||.+. ++|+++.+|+ ++.++.+++++|++ .+||+|||+.+-+.
T Consensus 480 ~~~~~~~~df~~lA~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~lIev~~~~~ 532 (578)
T PRK06546 480 FGTDHPPVDYAAIAAALGIHAVRVE--DPKDVRGALREAFA---HPGPALVDVVTDPN 532 (578)
T ss_pred ccccCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCCC
Confidence 011235688875 5999999997 79999999999886 38999999998543
No 72
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=99.54 E-value=4.1e-14 Score=146.03 Aligned_cols=113 Identities=28% Similarity=0.328 Sum_probs=90.6
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc-------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------- 238 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------- 238 (348)
+..|.+|+++|.|+|+++|. +++.|||++|||+++++. ++|++|++++||+++||.||+ |++....
T Consensus 404 ~~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~~--~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~ 477 (530)
T PRK07092 404 MASGGLGYGLPAAVGVALAQ----PGRRVIGLIGDGSAMYSI--QALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVR 477 (530)
T ss_pred cCCCcccchHHHHHHHHHhC----CCCeEEEEEeCchHhhhH--HHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCC
Confidence 44689999999999999985 678999999999999873 679999999999988888887 8764321
Q ss_pred ---ccccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 239 ---WRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 239 ---~~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
.......||.+. ++|+++++|+ ++.++.+++++|.+ .++|+|||+.+
T Consensus 478 ~~~~~~~~~~d~~~~a~~~G~~~~~v~--~~~~l~~al~~a~~---~~~p~liev~~ 529 (530)
T PRK07092 478 DVPGLDLPGLDFVALARGYGCEAVRVS--DAAELADALARALA---ADGPVLVEVEV 529 (530)
T ss_pred CCCCCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEc
Confidence 111234678774 5999999997 57788888887774 38999999976
No 73
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.54 E-value=3.2e-14 Score=147.36 Aligned_cols=116 Identities=24% Similarity=0.345 Sum_probs=94.7
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccccccC--
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAK-- 243 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~~~~-- 243 (348)
++.|+||.++|.|+|++++. +++.|||+.|||++++. .+.|.+|+++++|+++||.||+ |++.........
T Consensus 405 ~~~GtMG~glPaAIGAkla~----P~r~Vv~i~GDG~F~m~--~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~ 478 (550)
T COG0028 405 GGLGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFMMN--GQELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGG 478 (550)
T ss_pred CCCccccchHHHHHHHHhhC----CCCcEEEEEcccHHhcc--HHHHHHHHHhCCCEEEEEEECCccccchHHHHHhcCC
Confidence 46799999999999999886 78999999999999875 4559999999999998888887 787654321110
Q ss_pred -------Cch-HHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018967 244 -------SPS-YYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (348)
Q Consensus 244 -------~~~-~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (348)
.+. |.+. +||+++++|+ ++.++.+++++|++ +++|+|||+.+-+-
T Consensus 479 ~~~~~~~~~~~f~klAea~G~~g~~v~--~~~el~~al~~al~---~~~p~lidv~id~~ 533 (550)
T COG0028 479 RYSGTDLGNPDFVKLAEAYGAKGIRVE--TPEELEEALEEALA---SDGPVLIDVVVDPE 533 (550)
T ss_pred CcceeecCCccHHHHHHHcCCeeEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEecCc
Confidence 112 6664 5999999998 89999999999997 49999999999765
No 74
>PRK08266 hypothetical protein; Provisional
Probab=99.53 E-value=5.2e-14 Score=145.56 Aligned_cols=118 Identities=24% Similarity=0.332 Sum_probs=93.5
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Ccccccccc------c
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEW------R 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~~~------~ 240 (348)
..|++|+++|.|+|++++. +++.|||++|||+++++ .++|.+|++++||+++||.|| +|++..... +
T Consensus 400 ~~GsmG~~lp~aiGa~la~----p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~ 473 (542)
T PRK08266 400 YQGTLGYGFPTALGAKVAN----PDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGR 473 (542)
T ss_pred CCcccccHHHHHHHHHHhC----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCC
Confidence 3599999999999998874 78899999999999987 366999999999988777777 487643211 1
Q ss_pred ----ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCC
Q 018967 241 ----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGH 296 (348)
Q Consensus 241 ----~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GH 296 (348)
....+||.+. ++|+++.+|+ ++.++.++++++.+ .++|+|||+.|+|...+
T Consensus 474 ~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~liev~i~~~~~~ 530 (542)
T PRK08266 474 VVASDLVNPDFVKLAESFGVAAFRVD--SPEELRAALEAALA---HGGPVLIEVPVPRGSEA 530 (542)
T ss_pred cccCCCCCCCHHHHHHHcCCeEEEeC--CHHHHHHHHHHHHh---CCCcEEEEEEecCCCCc
Confidence 1123678874 5999999997 57899999988875 38999999999887543
No 75
>PRK12474 hypothetical protein; Provisional
Probab=99.53 E-value=3.5e-14 Score=146.25 Aligned_cols=113 Identities=25% Similarity=0.271 Sum_probs=89.7
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc-c-----
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-W----- 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~-~----- 239 (348)
+..|+||+++|.|+|+++|. +++.|||++|||++++. . .+|.+|++++||+++||.||+ |++.... .
T Consensus 386 ~~~gsmG~glpaAiGa~lA~----p~r~vv~i~GDG~f~m~-~-qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~ 459 (518)
T PRK12474 386 LTGGSIGQGLPLAAGAAVAA----PDRKVVCPQGDGGAAYT-M-QALWTMARENLDVTVVIFANRSYAILNGELQRVGAQ 459 (518)
T ss_pred cCCCccCccHHHHHHHHHHC----CCCcEEEEEcCchhcch-H-HHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCC
Confidence 34599999999999999985 78899999999999985 3 459999999999887777776 8764311 0
Q ss_pred ---c--------ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 240 ---R--------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 240 ---~--------~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
+ ..+..||.+. +||+++.+|+ ++.++.+++++|++ .++|+|||+.+
T Consensus 460 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~--~~~eL~~al~~a~~---~~~p~liev~~ 518 (518)
T PRK12474 460 GAGRNALSMLDLHNPELNWMKIAEGLGVEASRAT--TAEEFSAQYAAAMA---QRGPRLIEAMI 518 (518)
T ss_pred CCCccccccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc---CCCCEEEEEEC
Confidence 0 0112478874 5999999996 68899999999875 38999999964
No 76
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=99.53 E-value=2.3e-14 Score=149.71 Aligned_cols=119 Identities=20% Similarity=0.180 Sum_probs=93.5
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Cccccccccc------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYGMGTAEWR------ 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~i~~~~~~------ 240 (348)
+.|.+|+++|.|+|+++|. +++.||+++|||+++++ ..| |.+|+++++|+++||.|| +|++......
T Consensus 433 ~~g~mG~glp~aiGa~la~----p~r~vv~i~GDG~f~~~-~~e-l~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~ 506 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWGIS-MNE-VMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNR 506 (588)
T ss_pred cccccccHHHHHHHHHHhC----CCCcEEEEEcCchHhcc-HHH-HHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCC
Confidence 4699999999999999885 68899999999999986 455 889999999988777666 5875431100
Q ss_pred ----cc-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCC
Q 018967 241 ----AA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYH 294 (348)
Q Consensus 241 ----~~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~ 294 (348)
.. ..+||.+. ++|+++++|+ ++.++.++++++++..++++|+|||+.+-+-.
T Consensus 507 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~~~~~~p~lIev~~~~~~ 565 (588)
T PRK07525 507 FVGTELDNNVSYAGIAEAMGAEGVVVD--TQEELGPALKRAIDAQNEGKTTVIEIMCNQEL 565 (588)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhcCCCCCcEEEEEEecccc
Confidence 11 23588874 5999999996 78899999999987543369999999996544
No 77
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.52 E-value=4e-14 Score=147.52 Aligned_cols=117 Identities=20% Similarity=0.308 Sum_probs=94.0
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------c-
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------W- 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------~- 239 (348)
+.|.+|+++|.|+|+++|. +++.||+++|||++.+. ..+|.+|++++||+++||.||+ |++.... .
T Consensus 419 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~ 492 (574)
T PRK07979 419 GLGTMGFGLPAALGVKMAL----PEETVVCVTGDGSIQMN--IQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGR 492 (574)
T ss_pred CccchhhHHHHHHHHHHhC----CCCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCc
Confidence 4599999999999999985 78899999999999875 3459999999999887777776 7753311 0
Q ss_pred --c-c-cCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 --R-A-AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 --~-~-~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
. . ...+||.+. ++|+++.+|+ ++.++.+++++|++.++.++|+|||+.+-+
T Consensus 493 ~~~~~~~~~~d~~~iA~a~G~~g~~v~--~~~eL~~al~~a~~~~~~~~p~lIeV~i~~ 549 (574)
T PRK07979 493 HSQSYMQSLPDFVRLAEAYGHVGIQIS--HPDELESKLSEALEQVRNNRLVFVDVTVDG 549 (574)
T ss_pred cccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhccCCCCcEEEEEEECC
Confidence 0 1 123688874 5999999995 799999999999986545899999999864
No 78
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.52 E-value=4.6e-14 Score=147.73 Aligned_cols=114 Identities=18% Similarity=0.328 Sum_probs=91.9
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc--------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-------- 238 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~-------- 238 (348)
+.|.||+++|.|+|+++|. +++.||+++|||++++. .. +|.+|++++||+++||.||+ |++....
T Consensus 428 ~~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDG~f~m~-~~-EL~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~ 501 (595)
T PRK09107 428 GLGTMGYGLPAALGVQIAH----PDALVIDIAGDASIQMC-IQ-EMSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNR 501 (595)
T ss_pred CchhhhhhHHHHHHHHHhC----CCCeEEEEEcCchhhcc-HH-HHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCc
Confidence 3599999999999999985 78899999999999885 34 49999999999988887777 7753311
Q ss_pred -ccc--cCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 239 -WRA--AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 239 -~~~--~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
... ...+||.+. ++|+++.+|+ ++.++.+++++|.+ .++|+|||+.+.+
T Consensus 502 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIeV~i~~ 555 (595)
T PRK09107 502 LSHSYTEAMPDFVKLAEAYGAVGIRCE--KPGDLDDAIQEMID---VDKPVIFDCRVAN 555 (595)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEecC
Confidence 011 123688874 5999999995 78899999999886 3899999999965
No 79
>PRK07586 hypothetical protein; Validated
Probab=99.51 E-value=6.6e-14 Score=143.90 Aligned_cols=113 Identities=27% Similarity=0.287 Sum_probs=88.6
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------ 239 (348)
+..|.||+++|.|+|+++|. +++.|||++|||++++. ..+|.+|++++||+++||.||+ |++.....
T Consensus 382 ~~~g~mG~~lpaaiGa~lA~----p~r~Vv~i~GDGsf~m~--~~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~ 455 (514)
T PRK07586 382 LTGGAIGQGLPLATGAAVAC----PDRKVLALQGDGSAMYT--IQALWTQARENLDVTTVIFANRAYAILRGELARVGAG 455 (514)
T ss_pred cCCcccccHHHHHHHHHHhC----CCCeEEEEEechHHHhH--HHHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCC
Confidence 33589999999999999985 78899999999999985 3559999999999876666665 87643100
Q ss_pred ------c---cc--CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 240 ------R---AA--KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 240 ------~---~~--~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
. .. ..+||.+. +||+++.+|+ ++.++.+++++|++ .++|+|||+.+
T Consensus 456 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~el~~al~~a~~---~~~p~liev~~ 514 (514)
T PRK07586 456 NPGPRALDMLDLDDPDLDWVALAEGMGVPARRVT--TAEEFADALAAALA---EPGPHLIEAVV 514 (514)
T ss_pred CCCccccccccCCCCCCCHHHHHHHCCCcEEEeC--CHHHHHHHHHHHHc---CCCCEEEEEEC
Confidence 0 01 23588874 5999999996 68899999998875 38999999963
No 80
>PRK05858 hypothetical protein; Provisional
Probab=99.51 E-value=8e-14 Score=144.30 Aligned_cols=114 Identities=19% Similarity=0.177 Sum_probs=91.5
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc-cc-----
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-WR----- 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~-~~----- 240 (348)
..|.+|+++|.|+|+++|. +++.||+++|||++++. +.| |.+|++++||+++||.||+ |++.... ..
T Consensus 405 ~~gsmG~~lp~aiGa~la~----p~r~vv~i~GDG~f~~~-~~e-L~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~ 478 (542)
T PRK05858 405 PFGCLGTGPGYALAARLAR----PSRQVVLLQGDGAFGFS-LMD-VDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYD 478 (542)
T ss_pred CccccccchhHHHHHHHhC----CCCcEEEEEcCchhcCc-HHH-HHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCc
Confidence 4689999999999999885 78899999999999875 444 9999999999887776665 7764321 11
Q ss_pred ----ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ----~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
....+||.+. +||+++.+|+ +++++.+++++|++ .++|+|||+.|-+
T Consensus 479 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~lIev~~~~ 531 (542)
T PRK05858 479 VAADLRPGTRYDEVVRALGGHGELVT--VPAELGPALERAFA---SGVPYLVNVLTDP 531 (542)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCcEEEEEEECC
Confidence 1134688874 5999999996 78899999999886 4899999999853
No 81
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.50 E-value=1.2e-13 Score=128.77 Aligned_cols=123 Identities=17% Similarity=0.162 Sum_probs=91.5
Q ss_pred cCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccc-cchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc----
Q 018967 166 YGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW---- 239 (348)
Q Consensus 166 ~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~---- 239 (348)
+...+++|.++|.|+|++++ .+++.|||+.|||++ .++ .++|.+|+++++|+++||.||+ |++...+.
T Consensus 58 ~~~~gsmG~GlpaAiGa~~a----~p~r~VV~i~GDG~~~~m~--~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~ 131 (235)
T cd03376 58 FENAAAVASGIEAALKALGR----GKDITVVAFAGDGGTADIG--FQALSGAAERGHDILYICYDNEAYMNTGIQRSGST 131 (235)
T ss_pred hcCHHHHHHHHHHHHHHhcc----CCCCeEEEEEcCchHHhhH--HHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCC
Confidence 34557999999999998655 478899999999995 665 3559999999999998888887 68521110
Q ss_pred ----c-------------ccCCchHHhh--cCCcceEE-EcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCC
Q 018967 240 ----R-------------AAKSPSYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHS 297 (348)
Q Consensus 240 ----~-------------~~~~~~~~~~--g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs 297 (348)
+ ....+||.+. ++|++++. ++-.++.++.+++++|++. ++|+|||+.+.=...|.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el~~al~~a~~~---~gP~lIev~~~C~~~~~ 206 (235)
T cd03376 132 PYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIPYVATASVAYPEDLYKKVKKALSI---EGPAYIHILSPCPTGWR 206 (235)
T ss_pred CCCCEeecCCCCccccccccccCCHHHHHHHcCCcEEEEEcCCCHHHHHHHHHHHHhC---CCCEEEEEECCCCCCCC
Confidence 0 1123577774 58998863 4556899999999999863 89999999875444343
No 82
>PRK07064 hypothetical protein; Provisional
Probab=99.50 E-value=1.2e-13 Score=142.96 Aligned_cols=117 Identities=23% Similarity=0.279 Sum_probs=91.7
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc---
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW--- 239 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~--- 239 (348)
.+.++.|.||+++|.|+|+++|. +++.||+++|||++++. . .+|.+|++++||+++||.||+ |++.....
T Consensus 399 ~~~~~~g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~m~-~-~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~ 472 (544)
T PRK07064 399 NVHALGGGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLMLN-L-GELATAVQENANMVIVLMNDGGYGVIRNIQDAQ 472 (544)
T ss_pred eeccCCCccccccchhhhhhhhC----cCCcEEEEEcchHhhhh-H-HHHHHHHHhCCCeEEEEEeCChhHHHHHHHHHh
Confidence 34444589999999999999985 78899999999999875 3 459999999999876666665 87643111
Q ss_pred -------cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 240 -------RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 240 -------~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
.....+||.+. ++|+++.+|+ +++++.+++++|++ .++|+|||+.++
T Consensus 473 ~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~lIeV~~~ 528 (544)
T PRK07064 473 YGGRRYYVELHTPDFALLAASLGLPHWRVT--SADDFEAVLREALA---KEGPVLVEVDML 528 (544)
T ss_pred cCCccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHc---CCCCEEEEEEcc
Confidence 11134688874 5999999996 68899999998875 389999999986
No 83
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=99.50 E-value=1.1e-13 Score=144.47 Aligned_cols=117 Identities=23% Similarity=0.231 Sum_probs=92.5
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------ 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~------ 240 (348)
+.|.||+++|.|+|+++|. +++.|||++|||++++. . .+|.+|++++||+++||.||+ |++......
T Consensus 428 ~~g~mG~~lpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~-~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~ 501 (579)
T TIGR03457 428 SFGNCGYAFPTIIGAKIAA----PDRPVVAYAGDGAWGMS-M-NEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNR 501 (579)
T ss_pred ccccccchHHHHHhhhhhC----CCCcEEEEEcchHHhcc-H-HHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCc
Confidence 3589999999999999985 78899999999999985 3 449999999999886666665 876431110
Q ss_pred ----ccCC-chHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ----AAKS-PSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ----~~~~-~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.... +||.+. ++|+++.+|+ +++++.+++++|++..+.++|+|||+.+-+
T Consensus 502 ~~~~~~~~~~d~~~lA~a~G~~g~~v~--~~~el~~al~~a~~~~~~~~p~lieV~v~~ 558 (579)
T TIGR03457 502 FVGTELESELSFAGIADAMGAKGVVVD--KPEDVGPALKKAIAAQAEGKTTVIEIVCTR 558 (579)
T ss_pred ceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhCCCCCcEEEEEEeCC
Confidence 1122 488875 5999999996 799999999999875434889999999965
No 84
>PRK11269 glyoxylate carboligase; Provisional
Probab=99.50 E-value=8e-14 Score=145.77 Aligned_cols=118 Identities=26% Similarity=0.240 Sum_probs=93.6
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc-----c
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW-----R 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~-----~ 240 (348)
++.|++|+++|.|+|+++|. +++.|||++|||++++. ..| |.+|++++||+++||.||+ |++..... .
T Consensus 416 ~~~G~mG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~ 489 (591)
T PRK11269 416 GQAGPLGWTIPAALGVRAAD----PDRNVVALSGDYDFQFL-IEE-LAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMD 489 (591)
T ss_pred CccccccchhhhHHhhhhhC----CCCcEEEEEccchhhcC-HHH-HHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccC
Confidence 34699999999999999885 68899999999999885 344 9999999999988887777 77533110 0
Q ss_pred -----cc----------CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 018967 241 -----AA----------KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (348)
Q Consensus 241 -----~~----------~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R 292 (348)
.. ..+||.+. ++|+++.+|+ +++++.+|+++|++...+ +||+|||+.+-+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~~~~~~gp~lieV~v~~ 557 (591)
T PRK11269 490 YCVQLAFENINSPELNGYGVDHVKVAEGLGCKAIRVF--KPEDIAPALEQAKALMAEFRVPVVVEVILER 557 (591)
T ss_pred ccceeeccccccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhhcccCCCcEEEEEEecc
Confidence 00 13688874 5999999995 799999999999865443 899999999854
No 85
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=99.50 E-value=1.1e-13 Score=143.09 Aligned_cols=114 Identities=22% Similarity=0.311 Sum_probs=90.5
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc-----cc-
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-----WR- 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~-----~~- 240 (348)
+.|.||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|++++||+++||.||+ |++.... .+
T Consensus 406 ~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~ 479 (539)
T TIGR02418 406 GMQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFLFS-SME-LETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRS 479 (539)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEcchhhhch-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCc
Confidence 4689999999999999985 68899999999999985 344 9999999999876666655 7764311 11
Q ss_pred ---ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ---AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ---~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
....+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+.+
T Consensus 480 ~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~---~~~p~lIev~v~~ 531 (539)
T TIGR02418 480 SGVDFGPIDFVKYAESFGAKGLRVE--SPDQLEPTLRQAME---VEGPVVVDIPVDY 531 (539)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEecC
Confidence 1134688874 5999999996 68899999999875 3899999999854
No 86
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=99.49 E-value=1.4e-13 Score=143.59 Aligned_cols=114 Identities=23% Similarity=0.274 Sum_probs=90.2
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------ 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~------ 240 (348)
+.|.||+++|.|+|+++|. +++.|||++|||++++. .++|++|+++++|+++||.||+ |++....+.
T Consensus 435 g~gsmG~~l~~aiGa~la~----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~ 508 (578)
T PRK06112 435 GLAGLGWGVPMAIGAKVAR----PGAPVICLVGDGGFAHV--WAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTH 508 (578)
T ss_pred CccccccHHHHHHHHHhhC----CCCcEEEEEcchHHHhH--HHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCc
Confidence 3589999999999998874 78899999999999864 5669999999999998888887 565331111
Q ss_pred ----ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ----~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....||.+. ++|+++++|+ +++++.+++++|.+ .+||+|||+++-+
T Consensus 509 ~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~lIev~~~~ 561 (578)
T PRK06112 509 TDACHFAAVDHAAIARACGCDGVRVE--DPAELAQALAAAMA---APGPTLIEVITDP 561 (578)
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEcCc
Confidence 1124577774 5999999996 68899999988875 3899999999854
No 87
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=99.49 E-value=1.6e-13 Score=143.02 Aligned_cols=115 Identities=23% Similarity=0.304 Sum_probs=91.2
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------ 239 (348)
++.|.||+++|.|+|+++|. +++.||+++|||++++. ..| |.+|++++||+++||.||+ |++.....
T Consensus 405 ~~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~m~-~~e-L~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~ 478 (574)
T PRK09124 405 FNHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFSML-MGD-FLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYL 478 (574)
T ss_pred CCcccccchHHHHHHHHHhC----CCCeEEEEecCcHHhcc-HHH-HHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCc
Confidence 45699999999999999885 78899999999999875 344 9999999999876666665 77642100
Q ss_pred ---cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 ---RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ---~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....+||.+. +||+++.+|+ ++.++.+++++|++ .++|+|||+.+-+
T Consensus 479 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~lIev~i~~ 531 (574)
T PRK09124 479 TDGTDLHNPDFAAIAEACGITGIRVE--KASELDGALQRAFA---HDGPALVDVVTAK 531 (574)
T ss_pred cccCcCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEecC
Confidence 01134688874 5999999996 79999999999875 3899999999854
No 88
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.49 E-value=1.1e-13 Score=144.77 Aligned_cols=116 Identities=22% Similarity=0.377 Sum_probs=91.9
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------c
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------W 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------~ 239 (348)
++.|++|+++|.|+|+++|. +++.||+++|||++++. . .+|.+|++++||+++||.||+ |++.... .
T Consensus 434 ~~~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~m~-~-~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~ 507 (587)
T PRK06965 434 GGLGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQMC-I-QELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSK 507 (587)
T ss_pred CCcccccchHHHHHHHHHhC----CCCcEEEEEcchhhhcC-H-HHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 34589999999999999985 78899999999999885 3 459999999999987777776 6653311 0
Q ss_pred c----cc-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 R----AA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ~----~~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
+ .. ..+||.+. ++|+++.+|+ ++.++.+++++|+++ .++|+|||+.+-+
T Consensus 508 ~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~lieV~i~~ 563 (587)
T PRK06965 508 RYSHSYMDALPDFVKLAEAYGHVGMRIE--KTSDVEPALREALRL--KDRTVFLDFQTDP 563 (587)
T ss_pred CccccCCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEecc
Confidence 1 11 24688874 5999999996 788999999999872 3789999999853
No 89
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.49 E-value=1e-13 Score=145.57 Aligned_cols=114 Identities=23% Similarity=0.310 Sum_probs=91.6
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------ 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~------ 240 (348)
+.|.+|+++|.|+|+++|. +++.||+++|||++++. ..| |.+|++++||+++||.||+ |++......
T Consensus 432 ~~g~mG~glpaAiGA~lA~----p~r~Vv~i~GDG~f~m~-~~e-L~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~ 505 (616)
T PRK07418 432 GLGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFLMN-IQE-LGTLAQYGINVKTVIINNGWQGMVRQWQESFYGER 505 (616)
T ss_pred CccccccHHHHHHHHHHhC----CCCcEEEEEcchHhhhh-HHH-HHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCC
Confidence 4699999999999999885 78899999999999875 344 9999999999987777776 676432110
Q ss_pred ----cc--CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ----AA--KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ----~~--~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.. ..+||.+. ++|+++++|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 506 ~~~~~~~~~~~d~~~~A~a~G~~g~~V~--~~~el~~al~~a~~---~~~p~lIeV~i~~ 560 (616)
T PRK07418 506 YSASNMEPGMPDFVKLAEAFGVKGMVIS--ERDQLKDAIAEALA---HDGPVLIDVHVRR 560 (616)
T ss_pred ceeecCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEecC
Confidence 01 24688875 5999999996 78999999998886 3889999999864
No 90
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=99.49 E-value=1.6e-13 Score=143.01 Aligned_cols=116 Identities=20% Similarity=0.280 Sum_probs=90.6
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc-----c--
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-----W-- 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~-----~-- 239 (348)
..|.||+++|.|+|+++|. +++.||+++|||++++. . .+|.++++++||+++||.||+ |++.... .
T Consensus 406 ~~gsmG~glpaAiGa~la~----p~r~Vv~i~GDGsf~m~-~-~eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~ 479 (575)
T TIGR02720 406 LFATMGVGVPGAIAAKLNY----PDRQVFNLAGDGAFSMT-M-QDLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPL 479 (575)
T ss_pred CcchhhchHHHHHHHHHhC----CCCcEEEEEcccHHHhh-H-HHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCc
Confidence 3699999999999998875 78899999999999985 3 449999999999876655555 8864211 0
Q ss_pred --cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 --RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 --~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....+||.+. ++|+++.+|+ ++.++.++++++++ ...++|+|||+.+.-
T Consensus 480 ~~~~~~~~df~~iA~a~G~~~~~v~--~~~el~~al~~a~~-~~~~~p~liev~i~~ 533 (575)
T TIGR02720 480 IGVDFNDADFAKIAEGVGAVGFRVN--KIEQLPAVFEQAKA-IKQGKPVLIDAKITG 533 (575)
T ss_pred ccccCCCCCHHHHHHHCCCEEEEeC--CHHHHHHHHHHHHh-hCCCCcEEEEEEeCC
Confidence 11234678874 5999999996 68899999999885 224899999999854
No 91
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=99.48 E-value=1.4e-13 Score=143.87 Aligned_cols=114 Identities=24% Similarity=0.411 Sum_probs=90.8
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------c
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------W 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------~ 239 (348)
++.|.+|+++|.|+|+++|. +++.||++.|||++++. . .+|.+|++++||+++||.||+ |++.... .
T Consensus 427 ~~~g~mG~glpaaiGaala~----p~~~vv~i~GDG~f~m~-~-~eL~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~ 500 (585)
T CHL00099 427 AGLGTMGYGLPAAIGAQIAH----PNELVICISGDASFQMN-L-QELGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGE 500 (585)
T ss_pred ccccchhhhHHHHHHHHHhC----CCCeEEEEEcchhhhhh-H-HHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCC
Confidence 34699999999999999985 68899999999999875 3 459999999999988888887 6653211 0
Q ss_pred c------ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 240 R------AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 240 ~------~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
+ ....+||.+. ++|+++++|+ +++++.+++++|++ .+||+|||+.+-
T Consensus 501 ~~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~liev~v~ 555 (585)
T CHL00099 501 RYSHSNMEEGAPDFVKLAEAYGIKGLRIK--SRKDLKSSLKEALD---YDGPVLIDCQVI 555 (585)
T ss_pred CcccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEEC
Confidence 0 1124678874 5999999996 68899999988876 389999999995
No 92
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.48 E-value=1.9e-13 Score=142.37 Aligned_cols=116 Identities=21% Similarity=0.317 Sum_probs=91.5
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------c
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------W 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------~ 239 (348)
++.|++|+++|.|+|+++|. +++.||+++|||++++. . ..|.+|++++||+++||.||+ |++.... .
T Consensus 420 ~~~gsmG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~-~-~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~ 493 (574)
T PRK06466 420 GGLGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQMN-I-QELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEG 493 (574)
T ss_pred CCcchhhchHHHHHHHHHhC----CCCeEEEEEcchhhhcc-H-HHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCC
Confidence 34589999999999999985 78899999999999885 3 449999999999887766665 8753311 0
Q ss_pred ---cc--cCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 ---RA--AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ---~~--~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.. ...+||.+. ++|+++.+|+ ++.++.+++++|.+. .++|+|||+.+-+
T Consensus 494 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~~--~~~p~lIev~i~~ 549 (574)
T PRK06466 494 RHSHSYMESLPDFVKLAEAYGHVGIRIT--DLKDLKPKLEEAFAM--KDRLVFIDIYVDR 549 (574)
T ss_pred ceeecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEeCC
Confidence 01 123688774 5999999996 789999999998862 2899999999864
No 93
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=99.48 E-value=1.6e-13 Score=142.74 Aligned_cols=114 Identities=21% Similarity=0.297 Sum_probs=91.8
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------c
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------R 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------~ 240 (348)
+.|.+|+++|.|+|+++|. +++.||+++|||++++. +.| |.+|+++++|+++||.||+ |++..... +
T Consensus 417 ~~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~~~ 490 (564)
T PRK08155 417 GLGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVHQQQSLFYGQR 490 (564)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccHHHHHHhcCCC
Confidence 4589999999999999985 67899999999999985 566 9999999999988887777 88644211 0
Q ss_pred ----cc-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ----AA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ----~~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.. ...||.+. ++|+++++|+ +++++.+++++|++ .++|+|||+.+-+
T Consensus 491 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIeV~~~~ 544 (564)
T PRK08155 491 VFAATYPGKINFMQIAAGFGLETCDLN--NEADPQAALQEAIN---RPGPALIHVRIDA 544 (564)
T ss_pred eeeccCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCC
Confidence 11 23678874 5999999997 68889999988875 3899999999854
No 94
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=99.48 E-value=1.5e-13 Score=142.61 Aligned_cols=114 Identities=24% Similarity=0.392 Sum_probs=90.8
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------c-
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------W- 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------~- 239 (348)
+.|++|+++|.|+|+++|. +++.||+++|||++.+. .. +|.+|++++||+++||.||+ |++.... .
T Consensus 410 ~~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~~~-~~-eL~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~~ 483 (558)
T TIGR00118 410 GLGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQMN-LQ-ELSTAVQYDIPVKILILNNRYLGMVRQWQELFYEER 483 (558)
T ss_pred ccccccchhhHHHhhhhhC----CCCcEEEEEcchHHhcc-HH-HHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCc
Confidence 4589999999999998884 67899999999999884 44 49999999999998888887 5643210 0
Q ss_pred ----cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 ----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ----~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....+||.+. ++|+++++|+ +++++.+++++|++. ++|+|||+.+.+
T Consensus 484 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~~l~~al~~a~~~---~~p~liev~~~~ 537 (558)
T TIGR00118 484 YSHTHMGSLPDFVKLAEAYGIKGIRIE--KPEELDEKLKEALSS---NEPVLLDVVVDK 537 (558)
T ss_pred eeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhC---CCCEEEEEEeCC
Confidence 11124688875 5999999997 478999999988863 899999999964
No 95
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.48 E-value=1.4e-13 Score=143.34 Aligned_cols=115 Identities=21% Similarity=0.367 Sum_probs=91.1
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc-------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------- 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------- 239 (348)
+.|.||+++|.|+|+++|. +++.|||++|||++.+. . .+|.+|++++||+++||.||+ |++.....
T Consensus 419 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~-~-~EL~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~ 492 (572)
T PRK08979 419 GLGTMGFGLPAAMGVKFAM----PDETVVCVTGDGSIQMN-I-QELSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGR 492 (572)
T ss_pred CcccccchhhHHHhhhhhC----CCCeEEEEEcchHhhcc-H-HHHHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCc
Confidence 4589999999999999985 78899999999999885 3 449999999999887776666 77543111
Q ss_pred --cc-c-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 --RA-A-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 --~~-~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.. . ..+||.+. ++|+++.+|+ ++.++.+++++|++. .++|+|||+.+-+
T Consensus 493 ~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~lIev~i~~ 547 (572)
T PRK08979 493 HSHSYMDSVPDFAKIAEAYGHVGIRIS--DPDELESGLEKALAM--KDRLVFVDINVDE 547 (572)
T ss_pred ccccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEeCC
Confidence 01 1 23688874 5999999996 789999999998862 2899999999864
No 96
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.47 E-value=2.3e-13 Score=141.57 Aligned_cols=115 Identities=25% Similarity=0.342 Sum_probs=91.2
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------c
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------R 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------~ 240 (348)
+.|.+|+++|.|+|+++|. +++.|||++|||++++. ..| |.+|++++||+|+||.||+ |++..... .
T Consensus 412 ~~g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~ 485 (563)
T PRK08527 412 GLGTMGYGLPAALGAKLAV----PDKVVINFTGDGSILMN-IQE-LMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEER 485 (563)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEecCchhccc-HHH-HHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCc
Confidence 3599999999999999985 67889999999999985 456 9999999999987777776 67533110 0
Q ss_pred ----cc-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018967 241 ----AA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (348)
Q Consensus 241 ----~~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (348)
.. ..+||.+. ++|+++++|+ +++++.+++++|++ .++|+|||+.+.+.
T Consensus 486 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lieV~v~~~ 540 (563)
T PRK08527 486 YSETDLSTQPDFVKLAESFGGIGFRVT--TKEEFDKALKEALE---SDKVALIDVKIDRF 540 (563)
T ss_pred eeeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEECCc
Confidence 11 23578774 5999999996 68899999988875 38999999999763
No 97
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.47 E-value=1e-12 Score=126.50 Aligned_cols=133 Identities=16% Similarity=0.195 Sum_probs=95.5
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccc-cchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc------
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------ 240 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~------ 240 (348)
.|.+|.++|+|+|+++|. ++..||++.|||++ .+| ...|.+|+++++|+++||.||+ |++...+..
T Consensus 69 ~g~mG~alpaAiGaklA~----pd~~VV~i~GDG~~~~mg--~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g 142 (301)
T PRK05778 69 HTLHGRAIAFATGAKLAN----PDLEVIVVGGDGDLASIG--GGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEG 142 (301)
T ss_pred chhhccHHHHHHHHHHHC----CCCcEEEEeCccHHHhcc--HHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCC
Confidence 488999999999999885 78899999999997 565 2348899999999988887777 776442110
Q ss_pred ----------ccCCchHHhh--cCCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE--ecCCCCCCCCCCCCC
Q 018967 241 ----------AAKSPSYYKR--GDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT--YRYHGHSMSDPGSTY 305 (348)
Q Consensus 241 ----------~~~~~~~~~~--g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t--~R~~GHs~~D~~~~Y 305 (348)
.....||.+. ++|++++ ++.-.++.++.+++++|+++ +||+|||+.+ .-+++.. +.+
T Consensus 143 ~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~~ai~~A~~~---~GpalIeV~~~C~~~~~~~-----~~~ 214 (301)
T PRK05778 143 SKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLVELIKKAISH---KGFAFIDVLSPCVTFNGRN-----TST 214 (301)
T ss_pred cccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHHHHHHHHHhC---CCCEEEEEcCCCCCCCCcC-----Ccc
Confidence 0022467664 4888876 33345899999999999863 9999999864 3333322 234
Q ss_pred CCHHHHHHHH
Q 018967 306 RTRDEISGVR 315 (348)
Q Consensus 306 R~~~e~~~~~ 315 (348)
+++.++.+|-
T Consensus 215 ~~~~~~~~~~ 224 (301)
T PRK05778 215 KSPAYMREYY 224 (301)
T ss_pred cCHHHHHHHH
Confidence 5666666663
No 98
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=99.47 E-value=2.7e-13 Score=141.97 Aligned_cols=117 Identities=26% Similarity=0.307 Sum_probs=91.6
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHC-----CCCeEEEEecCC-ccccccc--
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW-----DLPAILVCENNH-YGMGTAE-- 238 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~-----~LPvI~Vv~NN~-~~i~~~~-- 238 (348)
++.|.||+++|.|+|+++|. +++.|||++|||++++....| |.+|+++ +||+++||.||+ |++....
T Consensus 412 ~~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~~~E-L~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~ 486 (597)
T PRK08273 412 GTLATMGPAVPYAIAAKFAH----PDRPVIALVGDGAMQMNGMAE-LITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQR 486 (597)
T ss_pred CccccccchHHHHHHHHHhC----CCCcEEEEEcchhHhccchHH-HHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHH
Confidence 34589999999999999985 788999999999998752344 9999998 899987777776 7653211
Q ss_pred ---c-------cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018967 239 ---W-------RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (348)
Q Consensus 239 ---~-------~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (348)
. ...+..||.+. ++|+++++|+ +++++.+++++|++ .++|+|||+.+-+.
T Consensus 487 ~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~lIeV~~~~~ 548 (597)
T PRK08273 487 VMEGDPKFEASQDLPDVPYARFAELLGLKGIRVD--DPEQLGAAWDEALA---ADRPVVLEVKTDPN 548 (597)
T ss_pred HhcCCCcccccccCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEeCCC
Confidence 0 01134578774 5999999996 78899999999886 39999999999653
No 99
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=99.47 E-value=1.8e-13 Score=141.69 Aligned_cols=113 Identities=17% Similarity=0.142 Sum_probs=88.2
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------c
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------R 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------~ 240 (348)
..|.||+++|.|+|+++|. +++.|||++|||++++. ..+|.+|+++++|+++||.||+ |++..... .
T Consensus 402 ~~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~ 475 (539)
T TIGR03393 402 LWGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYN 475 (539)
T ss_pred hhhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHHhH--HHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcC
Confidence 4599999999999999885 78899999999999875 3559999999999876666555 87643111 1
Q ss_pred ccCCchHHhh--cCCcc----eEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 241 AAKSPSYYKR--GDYVP----GLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 241 ~~~~~~~~~~--g~gip----g~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
....+||.+. ++|++ +.+|+ ++.++.+++++|++ .++|+|||+.+-
T Consensus 476 ~~~~~df~~la~a~G~~~~~~~~~v~--~~~el~~al~~a~~---~~~p~liev~i~ 527 (539)
T TIGR03393 476 DIALWNWTHLPQALSLDPQSECWRVS--EAEQLADVLEKVAA---HERLSLIEVVLP 527 (539)
T ss_pred cCCCCCHHHHHHHcCCCCccceEEec--cHHHHHHHHHHHhc---cCCeEEEEEEcC
Confidence 1234688774 58875 78985 68899999998875 389999999873
No 100
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=99.46 E-value=3.1e-13 Score=140.19 Aligned_cols=114 Identities=22% Similarity=0.312 Sum_probs=90.0
Q ss_pred CCccccchhHHHHHHHHHHHhCCC-CcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKD-ETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~-~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------ 239 (348)
+.|.+|+++|.|+|+++|. + ++.|||++|||++.+. ..+|.+|++++||+++||.||+ |++.....
T Consensus 394 ~~g~mG~glpaaiGa~la~----p~~~~Vv~i~GDGsf~~~--~~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~ 467 (549)
T PRK06457 394 WLGSMGIGVPGSVGASFAV----ENKRQVISFVGDGGFTMT--MMELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYP 467 (549)
T ss_pred CcchhhhhHHHHHHHHhcC----CCCCeEEEEEcccHHhhh--HHHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcCC
Confidence 4699999999999999885 5 7899999999999875 3459999999999876666555 77542110
Q ss_pred ---cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 ---RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ---~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....+||.+. ++|+++.+|+ ++.++..++++|++ .++|+|||+.+-+
T Consensus 468 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIeV~i~~ 520 (549)
T PRK06457 468 EWGVDLYNPDFTKIAESIGFKGFRLE--EPKEAEEIIEEFLN---TKGPAVLDAIVDP 520 (549)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCc
Confidence 11124688874 5999999996 78999999999875 3899999999854
No 101
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=99.46 E-value=3.2e-13 Score=140.23 Aligned_cols=115 Identities=22% Similarity=0.252 Sum_probs=91.1
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccc-cccc----
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGT-AEWR---- 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~-~~~~---- 240 (348)
+..|.+|+++|.|+|++++. +++.|||++|||++++. .++|.+|+++++|+++||.||+ |++.. ....
T Consensus 412 ~~~g~mG~glpaaiGa~la~----p~~~vv~i~GDGsf~~~--~~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~ 485 (557)
T PRK08199 412 PTSGSMGYGLPAAIAAKLLF----PERTVVAFAGDGCFLMN--GQELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPG 485 (557)
T ss_pred CCCccccchHHHHHHHHHhC----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCC
Confidence 34699999999999998874 78899999999999874 3569999999999998888887 77532 1111
Q ss_pred -----ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 -----AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 -----~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
....+||.+. +||+++.+|+ +++++.++++++++ .+||+|||+.+-+
T Consensus 486 ~~~~~~~~~~d~~~~a~a~G~~~~~v~--~~~el~~al~~a~~---~~gp~li~v~~~~ 539 (557)
T PRK08199 486 RVSGTDLTNPDFAALARAYGGHGETVE--RTEDFAPAFERALA---SGKPALIEIRIDP 539 (557)
T ss_pred ccccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCH
Confidence 1123578774 5999999997 57888888888875 3899999999854
No 102
>PLN02573 pyruvate decarboxylase
Probab=99.46 E-value=2.4e-13 Score=141.91 Aligned_cols=116 Identities=18% Similarity=0.093 Sum_probs=89.7
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc----cc
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW----RA 241 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~----~~ 241 (348)
+..|+||+++|.|+|+++|. +++.||+++|||++++. . .+|.+|++++||+++||.||+ |++..... ..
T Consensus 425 ~~~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~m~-~-~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~ 498 (578)
T PLN02573 425 MQYGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQVT-A-QDVSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNV 498 (578)
T ss_pred cchhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHHhH-H-HHHHHHHHcCCCCEEEEEeCCceeEEEeecccCccc
Confidence 34699999999999999886 78899999999999875 3 449999999999887776666 78643211 11
Q ss_pred cCCchHHhh--cC----C-cceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 242 AKSPSYYKR--GD----Y-VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 242 ~~~~~~~~~--g~----g-ipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
...+||.+. ++ | +++.+|+ ++.++.+++++|++. ..++|+|||+.+-
T Consensus 499 ~~~~d~~~lA~a~G~~~g~~~~~~V~--~~~eL~~al~~a~~~-~~~~p~lieV~v~ 552 (578)
T PLN02573 499 IKNWNYTGLVDAIHNGEGKCWTAKVR--TEEELIEAIATATGE-KKDCLCFIEVIVH 552 (578)
T ss_pred cCCCCHHHHHHHhcCcCCceeEEEec--CHHHHHHHHHHHHhh-CCCCcEEEEEEcC
Confidence 134677764 35 3 8899996 688999999998852 1289999999873
No 103
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.46 E-value=2.9e-13 Score=126.39 Aligned_cols=118 Identities=14% Similarity=0.091 Sum_probs=87.6
Q ss_pred CCccccchhHHHHHHHHHH-HhCCCCcEEEEEeCCcccc-chhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc----
Q 018967 168 GHGIVGAQIPLGCGLAFAQ-KYSKDETVTFALYGDGAAN-QGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR---- 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~-k~~~~~~~vv~~~GDGa~~-~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~---- 240 (348)
..|.+|+++|.|+|+++|. +...+++.|||+.|||++. +| +.| +.++..+++|+++||.||+ |++...+..
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~~-l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~ 139 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FGA-LSHSLFRGEDITVIVLDNEVYSNTGGQRSGATP 139 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HHH-HHHHHHcCCCeEEEEECCccccCCCCCCCCCCc
Confidence 4599999999999998871 1113788999999999974 55 344 6667789999988887777 675421111
Q ss_pred ------------ccCCchHHhh--cCCcceEE---EcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 241 ------------AAKSPSYYKR--GDYVPGLK---VDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 241 ------------~~~~~~~~~~--g~gipg~~---VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
....+||.+. ++|+++++ |+ ++.++.+|+++|++ +.+||+|||+.+.
T Consensus 140 ~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~--~~~~l~~al~~al~--~~~GP~lI~v~i~ 203 (237)
T cd02018 140 LGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPA--LKKHFLKVVKEAIS--RTDGPTFIHAYTP 203 (237)
T ss_pred CCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccC--CHHHHHHHHHHHHh--cCCCCEEEEEeCC
Confidence 1123678874 59999985 65 68999999999986 1399999999863
No 104
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=99.46 E-value=2.5e-13 Score=141.41 Aligned_cols=115 Identities=23% Similarity=0.265 Sum_probs=91.6
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc-cc----
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-WR---- 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~-~~---- 240 (348)
++.|.+|+++|.|+|+++|. +++.||+++|||++.+. . .+|.+|++++||+++||.||+ |++.... ..
T Consensus 418 ~~~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~m~-~-~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~ 491 (572)
T PRK06456 418 SGMGTMGFGLPAAMGAKLAR----PDKVVVDLDGDGSFLMT-G-TNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGK 491 (572)
T ss_pred CCcccccchhHHHHHHHHhC----CCCeEEEEEccchHhcc-h-HHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCC
Confidence 34699999999999999985 68899999999999886 3 449999999999887777776 7764311 10
Q ss_pred -----cc-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 -----AA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 -----~~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.. ..+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+.+
T Consensus 492 ~~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~lIev~v~~ 546 (572)
T PRK06456 492 RIVGVDYGPSPDFVKLAEAFGALGFNVT--TYEDIEKSLKSAIK---EDIPAVIRVPVDK 546 (572)
T ss_pred CcccccCCCCCCHHHHHHHCCCeeEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCc
Confidence 11 23688874 5999999995 78899999998875 3899999999975
No 105
>PRK08611 pyruvate oxidase; Provisional
Probab=99.46 E-value=3.3e-13 Score=140.75 Aligned_cols=113 Identities=21% Similarity=0.261 Sum_probs=89.8
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc----c----
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE----W---- 239 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~----~---- 239 (348)
.|.+|+++|.|+|+++|. +++.||+++|||++.+. . .+|.+|+++++|+++||.||+ |++.... .
T Consensus 407 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~m~-~-~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~ 480 (576)
T PRK08611 407 LGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFSMV-M-QDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEY 480 (576)
T ss_pred chhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHhhh-H-HHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcc
Confidence 599999999999999875 78899999999999985 3 459999999999876666665 7763211 0
Q ss_pred -cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 -RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 -~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....+||.+. ++|+++.+|+ +++++.+++++|++ .++|+|||+.+.+
T Consensus 481 ~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~lIeV~vd~ 531 (576)
T PRK08611 481 AIDLSDMDYAKFAEACGGKGYRVE--KAEELDPAFEEALA---QDKPVIIDVYVDP 531 (576)
T ss_pred cccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEeCC
Confidence 11134688875 5999999995 78899999998875 3899999999965
No 106
>PRK08617 acetolactate synthase; Reviewed
Probab=99.46 E-value=2.4e-13 Score=140.92 Aligned_cols=114 Identities=18% Similarity=0.240 Sum_probs=90.1
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc-----c-
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW-----R- 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~-----~- 240 (348)
+.|.||+++|.|+|+++|. +++.|||++|||++++. . .+|.+|+++++|+++||.||+ |++..... +
T Consensus 412 ~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~-~-~eL~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~ 485 (552)
T PRK08617 412 GMQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFLFS-A-MELETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRS 485 (552)
T ss_pred ccccccccccHHHhhHhhc----CCCcEEEEEechHHhhh-H-HHHHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCc
Confidence 4689999999999999885 78899999999999875 3 449999999999886666665 77643211 0
Q ss_pred ---ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ---AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ---~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
....+||.+. ++|+++.+|. ++.++.+++++|.+ .++|+|||+.+.+
T Consensus 486 ~~~~~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~liev~~~~ 537 (552)
T PRK08617 486 SGVDFGPVDFVKYAESFGAKGLRVT--SPDELEPVLREALA---TDGPVVIDIPVDY 537 (552)
T ss_pred ccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCcEEEEEEecc
Confidence 1124678774 5999999995 78899999998875 3899999999864
No 107
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=99.46 E-value=4.1e-13 Score=139.62 Aligned_cols=113 Identities=23% Similarity=0.304 Sum_probs=89.9
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------cc-
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------WR- 240 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------~~- 240 (348)
.|++|+++|.|+|+++|. +++.|||++|||++++. . .+|.+|+++++|+++||.||+ |++.... ..
T Consensus 413 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~-~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~~ 486 (561)
T PRK06048 413 LGTMGYGFPAAIGAKVGK----PDKTVIDIAGDGSFQMN-S-QELATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKRY 486 (561)
T ss_pred ccccccHHHHHHHHHHhC----CCCcEEEEEeCchhhcc-H-HHHHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCcc
Confidence 489999999999999985 78899999999999886 3 449999999999887776665 7753210 01
Q ss_pred ---c-cCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ---A-AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ---~-~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
. ...+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+-+
T Consensus 487 ~~~~~~~~~d~~~lA~a~G~~~~~v~--t~~el~~al~~a~~---~~~p~liev~~~~ 539 (561)
T PRK06048 487 SHTCIKGSVDFVKLAEAYGALGLRVE--KPSEVRPAIEEAVA---SDRPVVIDFIVEC 539 (561)
T ss_pred cccCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEecC
Confidence 1 134688874 5999999996 68899999999885 3899999999854
No 108
>PLN02470 acetolactate synthase
Probab=99.46 E-value=3.5e-13 Score=140.79 Aligned_cols=114 Identities=23% Similarity=0.361 Sum_probs=90.1
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc--------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-------- 238 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~-------- 238 (348)
+.|.+|+++|.|+|+++|. +++.|||++|||++++. . .+|.+|++++||+++||.||+ |++....
T Consensus 424 ~~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~-~-~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~~ 497 (585)
T PLN02470 424 GLGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFIMN-I-QELATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKAN 497 (585)
T ss_pred ccccccchHHHHHHHHHhC----CCCcEEEEEccchhhcc-H-HHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCCc
Confidence 4599999999999999985 78899999999999986 3 459999999999887766665 7653210
Q ss_pred --ccccC--------CchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 239 --WRAAK--------SPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 239 --~~~~~--------~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
..... .+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+-+
T Consensus 498 ~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lieV~i~~ 558 (585)
T PLN02470 498 RAHTYLGDPDAEAEIFPDFLKFAEGCKIPAARVT--RKSDLREAIQKMLD---TPGPYLLDVIVPH 558 (585)
T ss_pred eeeeecCccccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEeCC
Confidence 00111 1588874 5999999996 78899999999886 3899999999954
No 109
>PRK08322 acetolactate synthase; Reviewed
Probab=99.45 E-value=4.1e-13 Score=138.97 Aligned_cols=114 Identities=19% Similarity=0.261 Sum_probs=89.8
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------cc
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------WR 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------~~ 240 (348)
+.|.+|+++|.|+|+++|. +++.||+++|||++.+. . .+|.+|+++++|+++||.||+ |++.... ..
T Consensus 404 ~~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~-~-~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~ 477 (547)
T PRK08322 404 ALATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMN-S-QELETAVRLGLPLVVLILNDNAYGMIRWKQENMGFED 477 (547)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEcchhHhcc-H-HHHHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCCc
Confidence 4689999999999999885 78899999999999875 3 449999999999876665554 8864311 01
Q ss_pred ---ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ---AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ---~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
....+||.+. ++|+++.+|+ +++++.++++++.+ .++|+|||+.+.+
T Consensus 478 ~~~~~~~~df~~lA~a~G~~~~~v~--~~~eL~~al~~a~~---~~~p~lIev~v~~ 529 (547)
T PRK08322 478 FGLDFGNPDFVKYAESYGAKGYRVE--SADDLLPTLEEALA---QPGVHVIDCPVDY 529 (547)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEecC
Confidence 1124688874 5999999995 78999999998875 3899999999854
No 110
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=99.45 E-value=4.9e-13 Score=139.27 Aligned_cols=116 Identities=23% Similarity=0.384 Sum_probs=92.0
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc-------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------- 238 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------- 238 (348)
++.|++|+++|.|+|+++|. +++.||+++|||++++. .++|.+|+++++|+++||.||+ |++....
T Consensus 418 ~~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~ 491 (574)
T PRK06882 418 GGAGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSG 491 (574)
T ss_pred CCcccccchhHHHHHHHhhc----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCC
Confidence 34699999999999999985 67889999999999885 3669999999999988887777 6643211
Q ss_pred ---ccc-cCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 239 ---WRA-AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 239 ---~~~-~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
... ...+||.+. ++|+++++|+ ++.++.+++++|++. .++|+|||+.+-+
T Consensus 492 ~~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~liev~i~~ 547 (574)
T PRK06882 492 RHSQVYMNSLPDFAKLAEAYGHVGIQID--TPDELEEKLTQAFSI--KDKLVFVDVNVDE 547 (574)
T ss_pred cccccCCCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHhc--CCCcEEEEEEecC
Confidence 011 123678774 5999999996 688999999988863 2789999999965
No 111
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=99.44 E-value=6.2e-13 Score=138.53 Aligned_cols=114 Identities=26% Similarity=0.412 Sum_probs=90.2
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc-------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------- 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------- 239 (348)
+.|++|+++|.|+|+++|. +++.||+++|||++.+. +.| |++|+++++|+++||.||+ |++.....
T Consensus 422 ~~g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~m~-~~e-L~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~ 495 (571)
T PRK07710 422 GLGTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQMT-LQE-LSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQR 495 (571)
T ss_pred CcccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCc
Confidence 4589999999999999985 78899999999999984 455 9999999999877766665 77643210
Q ss_pred ----cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 240 ----RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 240 ----~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.....+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+.+
T Consensus 496 ~~~~~~~~~~d~~~~A~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lieV~vd~ 549 (571)
T PRK07710 496 YSHSLLSCQPDFVKLAEAYGIKGVRID--DELEAKEQLQHAIE---LQEPVVIDCRVLQ 549 (571)
T ss_pred ceeccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEecC
Confidence 01134688875 5999999996 57788888888875 3899999999965
No 112
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=99.42 E-value=8e-13 Score=136.96 Aligned_cols=114 Identities=22% Similarity=0.313 Sum_probs=90.0
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------cc
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------WR 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------~~ 240 (348)
+.|++|+++|.|+|+++|. +++.||+++|||++++. .. +|.+|+++++|+++||.||+ |++.... .+
T Consensus 399 ~~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~~~-~~-eL~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~~ 472 (548)
T PRK08978 399 GLGTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMN-VQ-ELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDER 472 (548)
T ss_pred chhhhhchHHHHHHHHHhC----CCCcEEEEEccchhhcc-HH-HHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCc
Confidence 4599999999999999885 78899999999999875 34 49999999999876666665 7754311 01
Q ss_pred ----cc-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ----AA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ----~~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.. ..+||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+-+
T Consensus 473 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIeV~id~ 526 (548)
T PRK08978 473 YSETDLSDNPDFVMLASAFGIPGQTIT--RKDQVEAALDTLLN---SEGPYLLHVSIDE 526 (548)
T ss_pred ceecCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEecC
Confidence 11 23688874 5999999995 78899999998875 3899999999965
No 113
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.42 E-value=1e-12 Score=125.18 Aligned_cols=112 Identities=15% Similarity=0.169 Sum_probs=84.6
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccc-hhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc------
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQ-GQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR------ 240 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~-G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~------ 240 (348)
.+++|.++|.|+|+++|. +++.||++.|||++.+ | .. .+.+|+++++|+++||.||+ |++...+..
T Consensus 67 ~~~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~~g-~~-el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g 140 (277)
T PRK09628 67 HTTHGRAVAYATGIKLAN----PDKHVIVVSGDGDGLAIG-GN-HTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKG 140 (277)
T ss_pred eeccccHHHHHHHHHHHC----CCCeEEEEECchHHHHhh-HH-HHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCC
Confidence 358899999999999985 8899999999999853 3 23 36679999999988887777 787431110
Q ss_pred -------c---cCCchHHhh--cCCcceE---EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 241 -------A---AKSPSYYKR--GDYVPGL---KVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 241 -------~---~~~~~~~~~--g~gipg~---~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
. .+..||.+. ++|++++ +| .++.++.+++++|+++ +||+|||+.+.
T Consensus 141 ~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v--~~~~el~~al~~Al~~---~Gp~lIeV~~~ 201 (277)
T PRK09628 141 MWTVTAQYGNIDPTFDACKLATAAGASFVARESV--IDPQKLEKLLVKGFSH---KGFSFFDVFSN 201 (277)
T ss_pred ceeeeccCCCcCCCCCHHHHHHHCCCceEEEEcc--CCHHHHHHHHHHHHhC---CCCEEEEEcCC
Confidence 0 112356664 5898875 56 4799999999999864 99999999764
No 114
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.42 E-value=2.3e-12 Score=127.13 Aligned_cols=130 Identities=20% Similarity=0.157 Sum_probs=94.5
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCC-CeEEEEecCC-cccccccccccCCch
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDL-PAILVCENNH-YGMGTAEWRAAKSPS 246 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~L-PvI~Vv~NN~-~~i~~~~~~~~~~~~ 246 (348)
.|++|+++|+|+|+|+|. +++.|||+.|||++.+. ..+|.+++.+++ |+++||.||+ |+....+.......|
T Consensus 220 ~GsMG~a~p~AlG~ala~----p~r~Vv~i~GDGsflm~--~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q~~~~~~~d 293 (361)
T TIGR03297 220 VGSMGHASQIALGLALAR----PDQRVVCLDGDGAALMH--MGGLATIGTQGPANLIHVLFNNGAHDSVGGQPTVSQHLD 293 (361)
T ss_pred echhhhHHHHHHHHHHHC----CCCCEEEEEChHHHHHH--HHHHHHHHHhCCCCeEEEEEcCccccccCCcCCCCCCCC
Confidence 599999999999999985 67899999999999763 345889999996 7887777777 654322222223467
Q ss_pred HHhh--cCCc-ceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCCCCCCCHHHHH
Q 018967 247 YYKR--GDYV-PGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPGSTYRTRDEIS 312 (348)
Q Consensus 247 ~~~~--g~gi-pg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~ 312 (348)
|.+. ++|+ .+++| ++..++.++++++++ .+||+|||+.+-...+-.. +.--.|+.|.+
T Consensus 294 ~~~iA~a~G~~~~~~v--~~~~eL~~al~~a~~---~~gp~lIeV~v~~g~~~~l---~rp~~~p~e~~ 354 (361)
T TIGR03297 294 FAQIAKACGYAKVYEV--STLEELETALTAASS---ANGPRLIEVKVRPGSRADL---GRPTTSPPENK 354 (361)
T ss_pred HHHHHHHCCCceEEEe--CCHHHHHHHHHHHHh---CCCcEEEEEEecCCCccCC---CCCCCCHHHHH
Confidence 7764 5775 35666 589999999999875 3899999999866543332 22235676654
No 115
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=99.41 E-value=1.7e-12 Score=134.68 Aligned_cols=113 Identities=20% Similarity=0.163 Sum_probs=88.7
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccc--c------c
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGT--A------E 238 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~--~------~ 238 (348)
..|.||+++|.|+|+++| +++.||++.|||++++. ..| |.+|++++||+++||.||+ |.... . .
T Consensus 415 ~~gsmG~~lpaaiGaala-----~~~~vv~i~GDGsf~m~-~~E-L~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~ 487 (554)
T TIGR03254 415 TWGVMGIGMGYAIAAAVE-----TGKPVVALEGDSAFGFS-GME-VETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPA 487 (554)
T ss_pred CCCcCCchHHHHHHHHhc-----CCCcEEEEEcCchhccc-HHH-HHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCC
Confidence 459999999999999997 26789999999999985 345 9999999999998888886 42110 0 0
Q ss_pred cccc-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 239 WRAA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 239 ~~~~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.... ..+||.+. ++|+++.+|+ +++++.+++++|++ .++|+|||+.+-+
T Consensus 488 ~~~~~~~~df~~la~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIev~id~ 539 (554)
T TIGR03254 488 PTVLVHGARYDKMMKAFGGVGYNVT--TPDELKAALNEALA---SGKPTLINAVIDP 539 (554)
T ss_pred ccccCCCCCHHHHHHHCCCeEEEeC--CHHHHHHHHHHHHh---CCCCEEEEEEECC
Confidence 0111 34688874 5999999995 78999999998875 3899999999853
No 116
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=99.40 E-value=1.5e-12 Score=136.19 Aligned_cols=114 Identities=25% Similarity=0.322 Sum_probs=89.7
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------c
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------R 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------~ 240 (348)
+.|++|+++|.|+|+++|. +++.||+++|||++.+. .. +|.+|+++++|+++||.||+ |++....+ .
T Consensus 417 ~~gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~m~-~~-eL~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~ 490 (586)
T PRK06276 417 GLGTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMN-SQ-ELATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKR 490 (586)
T ss_pred CccccccchhHHHhhhhhc----CCCcEEEEEcchHhhcc-HH-HHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCC
Confidence 3589999999999999885 67889999999999876 34 49999999999887776666 77532110 0
Q ss_pred ---c-c-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ---A-A-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ---~-~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
. . ...||.+. ++|+++.+|+ +++++.+++++|++ .++|+|||+.+-+
T Consensus 491 ~~~~~~~~~~d~~~la~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIeV~i~~ 544 (586)
T PRK06276 491 QSEVHLGETPDFVKLAESYGVKADRVE--KPDEIKEALKEAIK---SGEPYLLDIIIDP 544 (586)
T ss_pred cccccCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEecc
Confidence 1 1 23578874 5999999995 78999999998885 3899999999853
No 117
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=99.39 E-value=9.7e-13 Score=138.20 Aligned_cols=115 Identities=21% Similarity=0.318 Sum_probs=90.6
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------cc
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------WR 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------~~ 240 (348)
+.|++|+++|.|+|+++|. +++.|||++|||++.+. ..+|.+|++++||+++||.||+ |++.... ..
T Consensus 445 ~~G~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~ 518 (612)
T PRK07789 445 GLGTMGYAVPAAMGAKVGR----PDKEVWAIDGDGCFQMT--NQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEER 518 (612)
T ss_pred CcccccchhhhHHhhhccC----CCCcEEEEEcchhhhcc--HHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCC
Confidence 4589999999999999885 78899999999999875 3459999999999876666665 7754311 00
Q ss_pred ----cc-----CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 241 ----AA-----KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 241 ----~~-----~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.. ..+||.+. ++|+++.+|+ ++.++.+++++|++. .++|+|||+.+-+
T Consensus 519 ~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~--~~~eL~~al~~a~~~--~~~p~lIev~i~~ 577 (612)
T PRK07789 519 YSNTDLHTHSHRIPDFVKLAEAYGCVGLRCE--REEDVDAVIEKARAI--NDRPVVIDFVVGK 577 (612)
T ss_pred cceeecCcCCCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHhc--CCCcEEEEEEECC
Confidence 00 12588874 5999999995 788999999999873 2799999999964
No 118
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=99.39 E-value=2.3e-12 Score=134.16 Aligned_cols=112 Identities=19% Similarity=0.179 Sum_probs=88.5
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-c--ccccc--c--c-
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-Y--GMGTA--E--W- 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~--~i~~~--~--~- 239 (348)
..|++|+++|.|+|+++| +++.||+++|||++++. ..| |.+|+++++|+++||.||+ | .+... . .
T Consensus 422 ~~gsmG~glpaaiGa~la-----~~~~vv~i~GDG~f~m~-~~E-L~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~ 494 (569)
T PRK09259 422 TWGVMGIGMGYAIAAAVE-----TGKPVVAIEGDSAFGFS-GME-VETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDP 494 (569)
T ss_pred CCccccccHHHHHHHHhc-----CCCcEEEEecCcccccc-HHH-HHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCc
Confidence 459999999999999998 26789999999999885 345 9999999999998888887 3 21100 0 0
Q ss_pred --cc-cCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 240 --RA-AKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 240 --~~-~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
.. .+.+||.+. ++|+++++|+ ++.++.+++++|++ .++|+|||+.+-
T Consensus 495 ~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~~a~~---~~~p~lIev~id 546 (569)
T PRK09259 495 SPTVLVHHARYDKMMEAFGGVGYNVT--TPDELRHALTEAIA---SGKPTLINVVID 546 (569)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEEC--CHHHHHHHHHHHHh---CCCCEEEEEEEC
Confidence 11 134688874 5999999996 78899999999875 389999999985
No 119
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=99.39 E-value=1.8e-12 Score=134.16 Aligned_cols=113 Identities=18% Similarity=0.131 Sum_probs=86.9
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc-----cc
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW-----RA 241 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~-----~~ 241 (348)
..|.||+++|.|+|+++|. + +.+|+++|||++++. .. +|.+|++++||+++||.||+ |++..... ..
T Consensus 401 ~~g~mG~glpaaiGa~lA~----~-~r~v~i~GDG~f~m~-~~-EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~ 473 (535)
T TIGR03394 401 YYAGMGFGVPAGIGAQCTS----G-KRILTLVGDGAFQMT-GW-ELGNCRRLGIDPIVILFNNASWEMLRVFQPESAFND 473 (535)
T ss_pred ccchhhhHHHHHHHHHhCC----C-CCeEEEEeChHHHhH-HH-HHHHHHHcCCCcEEEEEECCccceeehhccCCCccc
Confidence 4599999999999999984 3 345789999999985 34 49999999999886666665 78654221 11
Q ss_pred cCCchHHh--hcCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 242 AKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 242 ~~~~~~~~--~g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
...+||.+ +++|+++.+|+ ++.++.+++++|++. .++|+|||+.+-
T Consensus 474 ~~~~d~~~lA~a~G~~~~~v~--~~~eL~~al~~a~~~--~~~p~lIev~i~ 521 (535)
T TIGR03394 474 LDDWRFADMAAGMGGDGVRVR--TRAELAAALDKAFAT--RGRFQLIEAMLP 521 (535)
T ss_pred CCCCCHHHHHHHcCCCceEeC--CHHHHHHHHHHHHhc--CCCeEEEEEECC
Confidence 23468877 45999999996 688999999988862 256899999873
No 120
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.38 E-value=2.7e-12 Score=122.33 Aligned_cols=114 Identities=20% Similarity=0.153 Sum_probs=86.8
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCcccc-chhHHHHHHHHHHCCCCeEEEEecCC-cccccccc------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAAN-QGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW------ 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~-~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~------ 239 (348)
..+.+|.++|.|+|+++|. +++.||++.|||++. .| ...|..|+++++|+++||.||+ |++...+.
T Consensus 58 ~~~~mG~alp~AiGaklA~----pd~~VVai~GDG~~~~iG--~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~ 131 (280)
T PRK11869 58 FHTLHGRAIPAATAVKATN----PELTVIAEGGDGDMYAEG--GNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLK 131 (280)
T ss_pred CCcccccHHHHHHHHHHHC----CCCcEEEEECchHHhhCc--HHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCC
Confidence 3466999999999998874 789999999999975 33 3449999999999998888887 77643111
Q ss_pred --c--------ccCCchHHhh--cCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 240 --R--------AAKSPSYYKR--GDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 240 --~--------~~~~~~~~~~--g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
. .....|+.+. ++|++++.. +-.++.++.+++++|+++ +||+|||+.+
T Consensus 132 g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~~---~Gp~lIeV~~ 192 (280)
T PRK11869 132 GFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETKEILKEAIKH---KGLAIVDIFQ 192 (280)
T ss_pred CcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHhC---CCCEEEEEEC
Confidence 0 0112467664 589988762 245899999999999974 9999999985
No 121
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.38 E-value=4.1e-12 Score=121.14 Aligned_cols=115 Identities=23% Similarity=0.268 Sum_probs=88.2
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCc-cccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc----
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDG-AANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR---- 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDG-a~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~---- 240 (348)
...+.+|.++|+|+|+++|. ++..||++.||| ++.+|. ..|..|+++++|+++||.||+ |++...+..
T Consensus 56 ~~~~~~G~alp~A~GaklA~----Pd~~VV~i~GDG~~f~ig~--~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~ 129 (279)
T PRK11866 56 GIHGIHGRVLPIATGVKWAN----PKLTVIGYGGDGDGYGIGL--GHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTP 129 (279)
T ss_pred CcccccccHHHHHHHHHHHC----CCCcEEEEECChHHHHccH--HHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCC
Confidence 34688899999999999985 788999999999 688873 449999999999988888887 677542111
Q ss_pred ----c--cC--C----chHHh--hcCCcceEE-EcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 241 ----A--AK--S----PSYYK--RGDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 241 ----~--~~--~----~~~~~--~g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
. +. . .|+.+ .++|++.+. .+..++.++.+++++|+++ +||+|||+..
T Consensus 130 ~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~~---~Gps~I~v~~ 191 (279)
T PRK11866 130 RGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIKH---KGFSFIDVLS 191 (279)
T ss_pred CCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 0 10 1 16665 458887663 3557899999999999974 9999999974
No 122
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=99.38 E-value=1.5e-12 Score=135.69 Aligned_cols=113 Identities=25% Similarity=0.356 Sum_probs=87.6
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc--------
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE-------- 238 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~-------- 238 (348)
+.|++|+++|.|+|+++|. +++.||+++|||++++. . ..|.+|+++++|+++||.||+ |++....
T Consensus 416 ~~g~mG~glpaaiGa~lA~----p~~~Vv~i~GDG~f~m~-~-~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~ 489 (566)
T PRK07282 416 GLGTMGFGIPAAIGAKIAN----PDKEVILFVGDGGFQMT-N-QELAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGR 489 (566)
T ss_pred ccccccchhhHhheeheec----CCCcEEEEEcchhhhcc-H-HHHHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCC
Confidence 4699999999999999885 78899999999999885 3 449999999999876666665 7764311
Q ss_pred --cccc-CCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 239 --WRAA-KSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 239 --~~~~-~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.... ..+||.+. ++|+.+.+|+ ++.++.++++ +.. +++|+|||+.+-+
T Consensus 490 ~~~~~~~~~~d~~~lA~a~G~~~~~v~--~~~el~~al~-~~~---~~~p~lIeV~v~~ 542 (566)
T PRK07282 490 TSESVFDTLPDFQLMAQAYGIKHYKFD--NPETLAQDLE-VIT---EDVPMLIEVDISR 542 (566)
T ss_pred cccccCCCCCCHHHHHHHCCCEEEEEC--CHHHHHHHHH-Hhc---CCCCEEEEEEeCC
Confidence 0111 24688874 5999999996 6888888885 332 4899999999865
No 123
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.37 E-value=4e-12 Score=121.78 Aligned_cols=115 Identities=20% Similarity=0.225 Sum_probs=85.3
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCcc-ccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccc-----
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEW----- 239 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa-~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~----- 239 (348)
+..|.+|.++|+|+|+++|. ++..||++.|||+ +++|. . .|..|+++++|+++||.||+ |++...+.
T Consensus 66 ~~~g~mG~alpaAiGaklA~----Pd~~VV~i~GDG~~f~mg~-~-eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~ 139 (286)
T PRK11867 66 GFHTIHGRALAIATGLKLAN----PDLTVIVVTGDGDALAIGG-N-HFIHALRRNIDITYILFNNQIYGLTKGQYSPTSP 139 (286)
T ss_pred chhhhhhcHHHHHHHHHHhC----CCCcEEEEeCccHHHhCCH-H-HHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCC
Confidence 34589999999999999984 7899999999996 77773 3 38899999999987777776 78743211
Q ss_pred --cc---c------CCchHHhh--cCCcceEE-EcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 240 --RA---A------KSPSYYKR--GDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 240 --~~---~------~~~~~~~~--g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
.. . ...++.+. ++|...+. +.-.++.++.+++++|+++ +||+|||+.+
T Consensus 140 ~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el~~al~~Al~~---~Gp~lIev~~ 201 (286)
T PRK11867 140 VGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQLTELIKAAINH---KGFSFVEILQ 201 (286)
T ss_pred CCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 00 0 01355554 46766552 2345799999999999863 9999999974
No 124
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=99.35 E-value=1.7e-12 Score=134.98 Aligned_cols=110 Identities=20% Similarity=0.144 Sum_probs=85.4
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccc----cc----
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTA----EW---- 239 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~----~~---- 239 (348)
.+.+|+++|.|+|+++| +++.|||++|||++++. .. +|.+|+++++|+++||.||+ |++... ..
T Consensus 424 ~~~~G~~lpaaiGaala-----~~~~vv~i~GDGsf~~~-~~-eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~ 496 (568)
T PRK07449 424 ASGIDGLLSTAAGVARA-----SAKPTVALIGDLSFLHD-LN-GLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPVF 496 (568)
T ss_pred ccchhhHHHHHHHHHhc-----CCCCEEEEechHHhhcC-cH-HHHhhcccCCCeEEEEEECCCCccccCCCCCCCcchh
Confidence 47799999999999987 37789999999999875 24 48999999999887776666 774211 00
Q ss_pred -c---ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 240 -R---AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 240 -~---~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
+ .....||.+. ++|+++.+|+ ++.++.+++++|++ .++|+|||+.+
T Consensus 497 ~~~~~~~~~~df~~lA~a~G~~~~~V~--~~~eL~~al~~a~~---~~~p~lIev~i 548 (568)
T PRK07449 497 ERFFGTPHGVDFAHAAAMYGLEYHRPE--TWAELEEALADALP---TPGLTVIEVKT 548 (568)
T ss_pred hHhhcCCCCCCHHHHHHHcCCCccCCC--CHHHHHHHHHHHhc---CCCCEEEEEeC
Confidence 1 1124678875 4999999995 78899999999874 38999999987
No 125
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.34 E-value=6.2e-12 Score=120.26 Aligned_cols=113 Identities=19% Similarity=0.265 Sum_probs=83.5
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccc-cchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc-----
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----- 240 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~----- 240 (348)
..+.+|.++|+|+|+++|. +++.||++.|||++ .+| ...|..|+++++|+++||.||+ |++...+..
T Consensus 51 ~~t~mG~alPaAiGaklA~----Pd~~VVai~GDG~f~~mg--~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~ 124 (287)
T TIGR02177 51 FHGLHGRALPVATGIKLAN----PHLKVIVVGGDGDLYGIG--GNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLK 124 (287)
T ss_pred cccccccHHHHHHHHHHHC----CCCcEEEEeCchHHHhcc--HHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccC
Confidence 3466899999999999885 88999999999996 466 3449999999999988887777 787542211
Q ss_pred ---c----------cCCchHHhhc--CCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 241 ---A----------AKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 241 ---~----------~~~~~~~~~g--~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
. ...+++.+.+ +++.+.. .-.++.++.+++++|+++ +||+|||+.+
T Consensus 125 G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~-~~~~~~eL~~ai~~Al~~---~GpslIeV~~ 185 (287)
T TIGR02177 125 GVKTKSLPYPNIQDPVNPLLLAIALGYTFVARG-FSGDVAHLKEIIKEAINH---KGYALVDILQ 185 (287)
T ss_pred CcceeecccCccCCCCCHHHHHHhCCCCeEEEE-ecCCHHHHHHHHHHHHhC---CCCEEEEEeC
Confidence 0 0123455544 4444443 225899999999999864 9999999975
No 126
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.30 E-value=1.6e-11 Score=128.59 Aligned_cols=159 Identities=18% Similarity=0.088 Sum_probs=104.8
Q ss_pred hHHHHhcCCCHHHHHHH---HhCCCCCCCCCCCCCcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeC
Q 018967 124 HCTFLGRGGTLLEVFSE---LMGRKDGCSHGKGGSMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYG 200 (348)
Q Consensus 124 ~~~~l~~G~~~~~~~ae---l~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~G 200 (348)
+...+.-|++-..++.+ .+..+.-.+.+-|.+.-+..+...+....+.+|+++|.|+|+++|. +++.||+++|
T Consensus 354 r~~~~C~GCp~~~~~~~l~~~l~~d~ivv~D~G~~~~~~~~p~~~~~~~~~mG~~~~~AiGa~~a~----p~~~Vv~i~G 429 (595)
T TIGR03336 354 RPPSLCAGCPHRATFYAMKKVADREAIFPSDIGCYTLGIQPPLGTVDTTLCMGASIGVASGLSKAG----EKQRIVAFIG 429 (595)
T ss_pred CCCCCCCCCCChHHHHHHHHhccCCcEEecCcchhhccccCCccccceeeccCchHHHHhhhhhcC----CCCCEEEEec
Confidence 45556666665555444 3443332222222221111222234445689999999999998874 7789999999
Q ss_pred CccccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc----------ccCCchHHh--hcCCcceEEEcC-CCHHH
Q 018967 201 DGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR----------AAKSPSYYK--RGDYVPGLKVDG-MDALA 266 (348)
Q Consensus 201 DGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~----------~~~~~~~~~--~g~gipg~~VDG-~D~~a 266 (348)
||++.+....| |.+|+.+++|+++||.||+ |++...+.. .....||.+ +++|+++++|.. .|..+
T Consensus 430 DG~f~~~g~~e-L~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~v~~~~~l~~ 508 (595)
T TIGR03336 430 DSTFFHTGIPG-LINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEELCRASGVEFVEVVDPLNVKE 508 (595)
T ss_pred cchhhhcCHHH-HHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEEEEeCcCCHHH
Confidence 99998632344 8889999999987777775 786542211 012357776 459999998853 45667
Q ss_pred HHHHHHHHHHHhccCCCEEEEEEE
Q 018967 267 VKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 267 v~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
+.+++++|++ .+||++|++..
T Consensus 509 l~~al~~a~~---~~gp~li~v~~ 529 (595)
T TIGR03336 509 TIEVFKAALA---AEGVSVIIAKQ 529 (595)
T ss_pred HHHHHHHHHh---cCCCEEEEEcc
Confidence 7888888886 38999999964
No 127
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.19 E-value=6.6e-10 Score=106.83 Aligned_cols=176 Identities=15% Similarity=0.135 Sum_probs=119.4
Q ss_pred CccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccc-cchhHHHHHHHHHHCCCCeEEEEecCC-ccccccccc-
Q 018967 164 GFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWR- 240 (348)
Q Consensus 164 ~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~- 240 (348)
++...++.+|.+.++|.|++.|.+..+++..||++.|||++ .-| .++|.-|...+.++++||.||. |+++.-+..
T Consensus 63 ~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG--~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~ 140 (299)
T PRK11865 63 NVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIG--FQSLSGAMERGHNILYLMYDNEAYMNTGIQRSG 140 (299)
T ss_pred ccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhcc--HHHHHHHHHcCCCeEEEEECCccccCCCCCCCC
Confidence 44556789999999999999998876777889999999997 455 3789999999999999999998 665321110
Q ss_pred --------------------ccCCchHHh--hcCCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE--ecCCC
Q 018967 241 --------------------AAKSPSYYK--RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT--YRYHG 295 (348)
Q Consensus 241 --------------------~~~~~~~~~--~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t--~R~~G 295 (348)
.....|+.. .++|++.+ +++-.|+.++.+++++|+++ +||.||++.. ...++
T Consensus 141 ~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~~~---~Gps~I~v~sPC~~~~~ 217 (299)
T PRK11865 141 STPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKKAKEV---EGPAYIQVLQPCPTGWG 217 (299)
T ss_pred CCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHhC---CCCEEEEEECCCCCCCC
Confidence 001224444 34788776 56777999999999999974 9999999984 44455
Q ss_pred CCCCCCC--------C----CCCC-HHHHHHHHhcCCH-------HHHHHHHHHHcCC---CCHHHHHHHHHHHH
Q 018967 296 HSMSDPG--------S----TYRT-RDEISGVRQERDP-------IERIRKLILAHDL---ATEKELKVFIQLVY 347 (348)
Q Consensus 296 Hs~~D~~--------~----~YR~-~~e~~~~~~~~DP-------i~~~~~~L~~~g~---~t~~el~~i~~~~~ 347 (348)
+.+++.. + .||= +..++ ...+| ..-++++|..+|- ++++++++++++++
T Consensus 218 ~~~~~~~~~~klAvetg~~plye~~~g~~~---~~~~~~~ld~~~~~pv~~~l~~q~Rf~~L~~~~~~~~q~~v~ 289 (299)
T PRK11865 218 FPPEKTIEIGRLAVETGYWPLFEIENGKFK---ITYEPLHLDRRTRKPIEEYLKVQGRFKHLTEEDIEILQKYID 289 (299)
T ss_pred CCHHHHHHHHHHHHhcCceeEEEEECCeec---cCCCcccccccCCCCHHHHHhhCcchhcCCHHHHHHHHHHHH
Confidence 4433210 0 1220 00000 01122 2246666665543 68899999998875
No 128
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=99.10 E-value=7.3e-10 Score=111.53 Aligned_cols=159 Identities=19% Similarity=0.191 Sum_probs=103.6
Q ss_pred ChhHHHHHHHHhcCCCCCEEEcCCcchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCc--cCCCccccch
Q 018967 98 DGQEAVAIGMEAGITKKDSIITAYRDHCTFLGRGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGF--YGGHGIVGAQ 175 (348)
Q Consensus 98 ~GqEa~~vg~~~~l~~~D~i~~~yR~~~~~l~~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~--~~~~g~lG~~ 175 (348)
.=||-+.--+...|+++|.|+.- .|. .+||-. -+...+...| .+.+|++|+.
T Consensus 363 Ltq~~~w~~~~~fl~p~dviiae---tGt-------------S~FG~~----------~~~lP~~~~~i~Q~lWGSIG~t 416 (557)
T COG3961 363 LTQEWLWNTVQNFLKPGDVIIAE---TGT-------------SFFGAL----------DIRLPKGATFISQPLWGSIGYT 416 (557)
T ss_pred ccHHHHHHHHHhhCCCCCEEEEc---ccc-------------ccccce----------eeecCCCCeEEcccchhhcccc
Confidence 46777777789999999999881 221 133321 1111222222 3458999999
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCccccccccccc-CCc-----hHH
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAA-KSP-----SYY 248 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~~~~~~~~-~~~-----~~~ 248 (348)
+|.++|+++|. +++.+|.|+||||++.- +.| +.+-.+|+|| +|||++|++|.|-+-..... +.. ||.
T Consensus 417 ~pAalGa~~A~----~drR~IL~iGDGs~QlT-vQE-iStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YNdI~~Wd~~ 490 (557)
T COG3961 417 LPAALGAALAA----PDRRVILFIGDGSLQLT-VQE-ISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYNDIQSWDYT 490 (557)
T ss_pred cHhhhhhhhcC----CCccEEEEEcCchhhhh-HHH-HHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCcccccccchh
Confidence 99999999997 67999999999999873 445 8888899997 78999999998755332211 111 333
Q ss_pred h--hcCCcce----EEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 249 K--RGDYVPG----LKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 249 ~--~g~gipg----~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
+ .++|... .++ ...+.+..+++.+.+. .+++.+|||++.+
T Consensus 491 ~l~~afg~~~~~~~~~~--~~~~~l~~~~~~~~~~--~~~i~lIEv~lp~ 536 (557)
T COG3961 491 ALPEAFGAKNGEAKFRA--TTGEELALALDVAFAN--NDRIRLIEVMLPV 536 (557)
T ss_pred hhhhhcCCCCceEEEee--cChHHHHHHHHHHhcC--CCceEEEEEecCc
Confidence 3 1344322 222 2344555666655542 2789999998754
No 129
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.06 E-value=4.2e-10 Score=129.66 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=87.9
Q ss_pred cCCCccccc--hhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHC--CCCeEEEEecCC-ccccccc--
Q 018967 166 YGGHGIVGA--QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW--DLPAILVCENNH-YGMGTAE-- 238 (348)
Q Consensus 166 ~~~~g~lG~--~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~--~LPvI~Vv~NN~-~~i~~~~-- 238 (348)
.++.|.+|. ++|.|+|+++|. ++.|+|++|||++.+. . .+|.+|+++ ++|+++||.||+ |++-...
T Consensus 755 ~~~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m~-~-~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~ 827 (1655)
T PLN02980 755 AGNRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLHD-T-NGLSILSQRIARKPMTILVINNHGGAIFSLLPI 827 (1655)
T ss_pred EecCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHhh-h-hHHHHhhcccCCCCEEEEEEeCCCcHhhhcCcc
Confidence 345689998 599999999884 6789999999999874 3 449999884 999887777766 6654311
Q ss_pred ----c-----c---ccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 239 ----W-----R---AAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 239 ----~-----~---~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
. . ....+||.+. +||+++.+|+ +++++.+++++|.+ .++|+|||+.|-|
T Consensus 828 ~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~--~~~eL~~aL~~a~~---~~~p~lIEV~t~~ 890 (1655)
T PLN02980 828 AKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVG--TKSELEDALFTSQV---EQMDCVVEVESSI 890 (1655)
T ss_pred CCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecC--CHHHHHHHHHHhhc---cCCCEEEEEecCh
Confidence 0 1 0123578774 5999999996 78899999988775 3899999999865
No 130
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.99 E-value=3.2e-09 Score=106.00 Aligned_cols=122 Identities=20% Similarity=0.303 Sum_probs=89.3
Q ss_pred CCCCcc-CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEe-cCC-cccccc
Q 018967 161 KDSGFY-GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCE-NNH-YGMGTA 237 (348)
Q Consensus 161 ~~~~~~-~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~-NN~-~~i~~~ 237 (348)
|.+.+. +.+|.||-|++.|+++|++. |++.|+|+-||++++.. .+| +.+++++|||++.||. ||+ ||..+.
T Consensus 420 Pr~rLDaGtfgTMGVG~Gfalaaa~~~----P~~~V~~veGDsaFGfS-aME-~ET~vR~~Lpvv~vV~NN~Giyg~d~~ 493 (571)
T KOG1185|consen 420 PRRRLDAGTFGTMGVGLGFALAAALAA----PDRKVVCVEGDSAFGFS-AME-LETFVRYKLPVVIVVGNNNGIYGLDDD 493 (571)
T ss_pred cccccCCccccccccchhHHHHHHhhC----CCCeEEEEecCcccCcc-hhh-HHHHHHhcCCeEEEEecCCcccccCcc
Confidence 333443 45799998888888887775 99999999999999874 466 8999999999876666 545 555432
Q ss_pred ccc---------------ccCCchHHh--hcCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 238 EWR---------------AAKSPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 238 ~~~---------------~~~~~~~~~--~g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
... ...+.+|.+ .++|..|+.|+ .++++..+++++... .++|+||.+..-+
T Consensus 494 ~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~--t~~el~~~l~~a~q~--~~~psvINVlI~p 561 (571)
T KOG1185|consen 494 GWKQISEQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVS--TVEELLAALQQACQD--TDKPSVINVLIGP 561 (571)
T ss_pred cHHHHhhcCcccCCCcccccccccHHHHHHHcCCCceeeC--CHHHHHHHHHHHHhc--CCCCeEEEEEecc
Confidence 211 112234554 46899999997 789999999888762 2699999998743
No 131
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=98.94 E-value=1.5e-09 Score=104.25 Aligned_cols=157 Identities=25% Similarity=0.296 Sum_probs=115.3
Q ss_pred HHHHHHhCCCCCCCCCCCC-------CcCCCCCCCCc-cCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccch
Q 018967 136 EVFSELMGRKDGCSHGKGG-------SMHFYKKDSGF-YGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQG 207 (348)
Q Consensus 136 ~~~ael~g~~~g~~~G~gg-------s~h~~~~~~~~-~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G 207 (348)
+-|.+.||++.....--|- -.|.+.|.+.+ .+..|++|+.+|.|+|+..| .+++-+|++.||-.++.
T Consensus 377 eemn~~fgrd~~yvstiglsqia~aqflhv~~pr~wincgqagplgwtipaalgv~~a----dp~r~vvalsgdydfqf- 451 (592)
T COG3960 377 EEMNKAFGRDVCYVTTIGLSQIAAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNVVAISGDYDFQF- 451 (592)
T ss_pred HHHHhhcCCceeEEEeccHHHHhhhhhhhhcCCcceeecCccCCcccccchhhceeec----CCCCceEEeecCchHHH-
Confidence 4456678887643221111 26777776544 45679999999999999766 48899999999999985
Q ss_pred hHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCC-------------c-------hHHh--hcCCcceEEEcCCCH
Q 018967 208 QLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKS-------------P-------SYYK--RGDYVPGLKVDGMDA 264 (348)
Q Consensus 208 ~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~-------------~-------~~~~--~g~gipg~~VDG~D~ 264 (348)
..|.|...++++||-|+|+.||.| |.....++.+.. + |..+ .|.|+..++| .+|
T Consensus 452 -mieelavgaq~k~pyihv~vnnaylglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgckairv--~~p 528 (592)
T COG3960 452 -LIEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRV--FKP 528 (592)
T ss_pred -HHHHHhhhhcccCceEEEEecchHHHHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCceeEEe--cCh
Confidence 578899999999999999999998 654433332210 0 1111 2456777888 478
Q ss_pred HHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCC
Q 018967 265 LAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSD 300 (348)
Q Consensus 265 ~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D 300 (348)
.++..|+.+|.....+ .-|++||+..-|...-+|.-
T Consensus 529 ~e~a~af~~a~~lm~eh~vpvvve~ilervtnismgt 565 (592)
T COG3960 529 EDIAPAFEQAKALMAQHRVPVVVEVILERVTNISMGT 565 (592)
T ss_pred HHhhHHHHHHHHHHHhcCCCeeeehHHHHhhcccccc
Confidence 8999999999887767 77999999999988777653
No 132
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.85 E-value=4.6e-09 Score=103.46 Aligned_cols=116 Identities=23% Similarity=0.320 Sum_probs=92.7
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-cccccccc-----
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWR----- 240 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~----- 240 (348)
++.|.+|.++|.|+|+..|. ++.+||-+-||+++++- ..| |.++.+.++||-+++.||.- ||.+..+.
T Consensus 521 GGLGtMGfGLPAAIGAsVA~----P~~iViDIDGDaSF~Mt-~~E-Lat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~ 594 (675)
T KOG4166|consen 521 GGLGTMGFGLPAAIGASVAN----PDAIVIDIDGDASFIMT-VQE-LATIRQENLPVKILILNNEEQGMVTQWQDLFYEA 594 (675)
T ss_pred CCccccccCcchhhcccccC----cccEEEeccCCceeeee-hHh-hhhhhhcCCceEEEEecchhhhhHHHHHHHHHHh
Confidence 56799999999999998774 99999999999999874 455 99999999999877777774 88664332
Q ss_pred -----ccCCchHHhhc--CCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018967 241 -----AAKSPSYYKRG--DYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (348)
Q Consensus 241 -----~~~~~~~~~~g--~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (348)
...+|+|.+.+ +|+++.+|. .-+++.+.+++.+. .+||+|+|+.+...
T Consensus 595 rysHThQ~nPnf~klA~AmGikalRV~--K~edL~~k~kefls---TkGPvLleV~v~~k 649 (675)
T KOG4166|consen 595 RYSHTHQENPNFLKLAAAMGIKALRVT--KKEDLREKIKEFLS---TKGPVLLEVIVPHK 649 (675)
T ss_pred hhccccccCccHHHHHHhcCCchheee--hHHHHHHHHHHHhC---CCCCeEEEEEccCc
Confidence 11357887764 899999996 56788888888775 49999999988654
No 133
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=98.71 E-value=2.1e-06 Score=89.29 Aligned_cols=132 Identities=23% Similarity=0.156 Sum_probs=96.8
Q ss_pred cCCCccccchhHHHHHHHHHHHhC-------CCCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCcccccc
Q 018967 166 YGGHGIVGAQIPLGCGLAFAQKYS-------KDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTA 237 (348)
Q Consensus 166 ~~~~g~lG~~lp~A~G~A~A~k~~-------~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~~~ 237 (348)
..++++||-+.-.|+=-|.-.||- .++..|+||.|||.+.++...+|+.+|++++|. +||||+.|.-....|
T Consensus 188 qFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgp 267 (887)
T COG2609 188 QFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGP 267 (887)
T ss_pred ccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCc
Confidence 446789999989999989888873 367899999999999999999999999999998 579999887544322
Q ss_pred cccc---------------------------------------------cCCchHHh---h-c-------CC--------
Q 018967 238 EWRA---------------------------------------------AKSPSYYK---R-G-------DY-------- 253 (348)
Q Consensus 238 ~~~~---------------------------------------------~~~~~~~~---~-g-------~g-------- 253 (348)
.... ..+-+|.. + | ++
T Consensus 268 VrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aL 347 (887)
T COG2609 268 VRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAAL 347 (887)
T ss_pred ccCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHH
Confidence 1100 00111211 0 0 11
Q ss_pred --------cceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCC
Q 018967 254 --------VPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMS 299 (348)
Q Consensus 254 --------ipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~ 299 (348)
+-.+.--|||+..|++|++.|.++ +++|+||-++|.+++|-..+
T Consensus 348 Va~~tD~diw~L~rGGHD~~ki~aA~~~A~~~--kg~PtvilA~TIKGyglg~~ 399 (887)
T COG2609 348 VADMTDDDIWALNRGGHDPEKVYAAFKKAQEH--KGRPTVILAKTIKGYGLGEA 399 (887)
T ss_pred HHhccHHHHHHHhcCCCCHHHHHHHHHHHhcC--CCCceEEEEeeeccccCchh
Confidence 111234599999999999999984 25899999999999887543
No 134
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=98.42 E-value=1e-06 Score=88.84 Aligned_cols=115 Identities=20% Similarity=0.177 Sum_probs=78.8
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCccccccccccc---
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGTAEWRAA--- 242 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~~~~~~~~--- 242 (348)
..+|++|+.+|.++|+++|. +++++|.|+|||+++.- +.| +.++.+|+|| .||+++|++|-|-.......
T Consensus 412 ~~wgsIG~svga~lG~a~a~----~e~rvilfiGDGs~qlT-vQe-iStmir~gl~~~if~~NN~GYTIE~~IH~~~Yn~ 485 (561)
T KOG1184|consen 412 MQWGSIGWSVGATLGYAQAA----PEKRVILFIGDGSFQLT-VQE-ISTMIRWGLKPIIFLINNGGYTIEVEIHDGPYND 485 (561)
T ss_pred EEEeeccccchhhhhhhhcc----CCceEEEEecCccceee-HHH-HHHHHhcCCCcEEEEEeCCceEEEEeecCCCccc
Confidence 34799999999999999986 67899999999999874 455 8888999998 56888888997754332211
Q ss_pred -CCchHHh--hcCC-----cceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 018967 243 -KSPSYYK--RGDY-----VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (348)
Q Consensus 243 -~~~~~~~--~g~g-----ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~ 291 (348)
..-+|.+ .++| ....+| ..-.+..++.+.+... + ++|.+|||...
T Consensus 486 I~~Wd~~~l~~afg~~~gk~~~~~v--~~~~e~~~~~~~~~~~--~~~~i~liEv~l~ 539 (561)
T KOG1184|consen 486 IQNWDYTALLEAFGAGEGKYETHKV--RTEEELVEAIKDATFE--KNDKIRLIEVILP 539 (561)
T ss_pred cccchHHHHHHhhcCccceeEEeee--ccchHHHHHHhhhhhc--ccCceEEEEEecC
Confidence 0123433 2332 223333 2234566666666531 3 78999999863
No 135
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=98.36 E-value=1.6e-06 Score=86.67 Aligned_cols=121 Identities=20% Similarity=0.267 Sum_probs=89.6
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC-Ccc-ccccc----c--
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN-HYG-MGTAE----W-- 239 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN-~~~-i~~~~----~-- 239 (348)
+.+.+|+-+.-++|+. ...+++-|++++|||++.+ .+..|.++..++..+++|+.+| +|| |..-+ .
T Consensus 442 gfSCMGYEiaG~lG~K----~a~pdreV~vmVGDGSymM--lnSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~s 515 (617)
T COG3962 442 GFSCMGYEIAGGLGAK----AAEPDREVYVMVGDGSYMM--LNSELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGAS 515 (617)
T ss_pred cccccccccccccccc----cCCCCCeEEEEEcccchhh--hhHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcch
Confidence 4578999888888876 4568899999999999986 5677999999999987666555 586 32111 0
Q ss_pred -----------cccCCchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCCCCCCCCC
Q 018967 240 -----------RAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHGHSMSDPG 302 (348)
Q Consensus 240 -----------~~~~~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~GHs~~D~~ 302 (348)
......||++- +||...++|. ++.++.+|++.|++ +.+++||+++|.- +.+.|++
T Consensus 516 f~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~--~i~eL~aAL~~Ak~---~~~ttvi~I~t~P---~~~t~~g 583 (617)
T COG3962 516 FNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVG--TIEELEAALADAKA---SDRTTVIVIDTDP---KTTTDDG 583 (617)
T ss_pred hhhhhhhhcccCCCCcccHHHHHhhcCceeEecC--CHHHHHHHHHHHHh---CCCCEEEEEecCC---ccccCCC
Confidence 11234578774 5999999995 88888888887775 3899999998753 3455543
No 136
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=98.15 E-value=2.4e-05 Score=75.40 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=83.6
Q ss_pred CCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCcc-ccchhHHHHHHHHHHCCCCeEEEEecCC-ccccccc------
Q 018967 167 GGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGA-ANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAE------ 238 (348)
Q Consensus 167 ~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa-~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~------ 238 (348)
..++.-|-+.++|.|+.+|. ++..||++.|||. +..|. ..+--|...+..+.+||.||. |+.+.-+
T Consensus 67 ~~hs~~gra~a~atGik~A~----~~l~Viv~gGDG~~~dIG~--~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp 140 (294)
T COG1013 67 WVHSLHGRAAAVATGIKLAN----PALSVIVIGGDGDAYDIGG--NHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTP 140 (294)
T ss_pred ceeeccCcchhhHHHHHHhc----cCCeEEEEecchhHhhhhh--HHHHHHHHcCCCeEEEEECCeecccCCCccCCCCC
Confidence 44688899999999999987 5668999999995 57773 448888899999998888888 6754211
Q ss_pred -cccc---C------Cc-hHHh--hcCCcceE-EEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 239 -WRAA---K------SP-SYYK--RGDYVPGL-KVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 239 -~~~~---~------~~-~~~~--~g~gipg~-~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
...+ + .+ |... .++|.+.+ ++---++..+.+.+++|+++ +||.||++.+
T Consensus 141 ~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~kA~~~---~Gps~I~v~s 203 (294)
T COG1013 141 KGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIKKAAEH---KGPSFIDVLS 203 (294)
T ss_pred CCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHHHHHhc---cCCeEEEEec
Confidence 1100 0 11 2222 34676655 55445799999999999986 8999999975
No 137
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=98.11 E-value=5.1e-06 Score=81.15 Aligned_cols=139 Identities=19% Similarity=0.212 Sum_probs=75.9
Q ss_pred CcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHC-CC----CeEEEEec
Q 018967 155 SMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW-DL----PAILVCEN 229 (348)
Q Consensus 155 s~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~-~L----PvI~Vv~N 229 (348)
..|....-.|-.--.|-||+.+..|.|+++ .+||-+++|++|||++.+|-.. +-+.+..+ +- -|+=|+.=
T Consensus 125 pSH~~p~tPGsIhEGGELGYaLshA~GA~~----DnPdliv~~vvGDGEaETGplA-~sWh~~kflnP~~dGaVLPILhL 199 (379)
T PF09364_consen 125 PSHVSPETPGSIHEGGELGYALSHAFGAVF----DNPDLIVACVVGDGEAETGPLA-ASWHSNKFLNPATDGAVLPILHL 199 (379)
T ss_dssp -SSS-TTSTT-S---SSTS-HHHHHHHHHT----T-TT-EEEEEEETTGGGSHHHH-HHGGGGGSS-TTTS-EEEEEEEE
T ss_pred ccccCcCCCCccCcCcchhhHHHHHhhccc----CCCCeEEEEEecCCcccCCccc-ccccccceeCcccCceeeceEEe
Confidence 456654333444456888888888888875 4599999999999999998532 22223222 21 14445555
Q ss_pred CCcccccccccccC-CchHHh--hcCCcceEEEcCCCHHHHHHHHHHHHHH-----------hccC----CC--EEEEEE
Q 018967 230 NHYGMGTAEWRAAK-SPSYYK--RGDYVPGLKVDGMDALAVKQACKFAKEH-----------ALKN----GP--MILEMD 289 (348)
Q Consensus 230 N~~~i~~~~~~~~~-~~~~~~--~g~gipg~~VDG~D~~av~~a~~~A~~~-----------ar~~----gP--~lIe~~ 289 (348)
|+|-|+.++--... ..++.+ +|+|..-+.|+|.|+.++.+.+..+++. +|++ +| -+|.++
T Consensus 200 NG~KI~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~a~~~I~~iq~~Ar~~~~~~~prwPmivlR 279 (379)
T PF09364_consen 200 NGYKISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDWALEEIRAIQKAARSGNPAYRPRWPMIVLR 279 (379)
T ss_dssp -SBSSSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS----EEEEEEE
T ss_pred cCccccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCcEEEEE
Confidence 89988876532211 223444 5788888999999999998766555433 2221 23 267788
Q ss_pred EecCCCCCC
Q 018967 290 TYRYHGHSM 298 (348)
Q Consensus 290 t~R~~GHs~ 298 (348)
|.+.++-..
T Consensus 280 tPKGWtgP~ 288 (379)
T PF09364_consen 280 TPKGWTGPK 288 (379)
T ss_dssp --TTTTS-S
T ss_pred CCcccCCcc
Confidence 888765543
No 138
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=97.62 E-value=0.0017 Score=64.21 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=63.6
Q ss_pred cEEEEEeCCccc-cchhHHHHHHHHHHCCCCeEEEEecCC-ccccc-------cccccc---------CCchHHh--hcC
Q 018967 193 TVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGT-------AEWRAA---------KSPSYYK--RGD 252 (348)
Q Consensus 193 ~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~-------~~~~~~---------~~~~~~~--~g~ 252 (348)
.-||++.|||.+ ..| +..+.-|...+.++++||.||. |+.+. |....+ .-.|+.. .++
T Consensus 152 ~~v~v~gGDG~~ydIG--~~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~ 229 (365)
T cd03377 152 KSVWIIGGDGWAYDIG--YGGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSY 229 (365)
T ss_pred cceEEEecchhhhccc--hhhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHc
Confidence 479999999965 666 3447667778888888887777 77642 111100 0113332 347
Q ss_pred CcceE-EEc-CCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 253 YVPGL-KVD-GMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 253 gipg~-~VD-G~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
|.+++ ++- |-++.++.+++++|.++ +||.+|++.+.
T Consensus 230 g~~YVA~~s~~~~~~~~~~~i~eA~~~---~Gps~I~v~sP 267 (365)
T cd03377 230 GNVYVAQIALGANDNQTLKAFREAEAY---DGPSLIIAYSP 267 (365)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHhcC---CCCEEEEEEcc
Confidence 77665 443 35899999999999975 99999999863
No 139
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=97.51 E-value=0.00032 Score=72.95 Aligned_cols=112 Identities=24% Similarity=0.241 Sum_probs=79.8
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCcccc-chhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccc----
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAAN-QGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRA---- 241 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~-~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~---- 241 (348)
.+-.+|.++++|-|++++. .+.+|+++|||.+. .|. .++.-|+.-+.+++++|.+|.+ +|+..+..-
T Consensus 426 ~t~~mGssig~a~g~~~~~-----~k~~va~iGDsTF~HsGi--~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~ 498 (640)
T COG4231 426 TTTMMGSSIGIAGGLSFAS-----TKKIVAVIGDSTFFHSGI--LALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGV 498 (640)
T ss_pred hhhhccchhhhcccccccc-----CCceEEEeccccccccCc--HHHHHHHhcCCCeEEEEEeccchhccCCCCCCCccc
Confidence 3456777788888887663 37899999999984 553 4488888999999999999998 776543221
Q ss_pred ------cCCchHH--hhcCCcceEE-EcCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 018967 242 ------AKSPSYY--KRGDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEMD 289 (348)
Q Consensus 242 ------~~~~~~~--~~g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (348)
+...++. .++.|+..++ ||=.|+..+.+++++|+++ .||.||.++
T Consensus 499 ~~~g~~~~~i~iee~~r~~Gv~~v~~vdp~~~~~~~~~~keale~---~gpsViiak 552 (640)
T COG4231 499 AAEGTKSTAIVIEEVVRAMGVEDVETVDPYDVKELSEAIKEALEV---PGPSVIIAK 552 (640)
T ss_pred ccCCCccceeEhhHhhhhcCceeeeccCCcchHHHHHHHHHHhcC---CCceEEEEc
Confidence 1111222 2567766554 4657899999999998875 889988764
No 140
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.0024 Score=67.20 Aligned_cols=112 Identities=19% Similarity=0.225 Sum_probs=74.5
Q ss_pred CcCCCCCCCCccCCCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHH-HHCCCC----eEEEEec
Q 018967 155 SMHFYKKDSGFYGGHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIA-ALWDLP----AILVCEN 229 (348)
Q Consensus 155 s~h~~~~~~~~~~~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~A-a~~~LP----vI~Vv~N 229 (348)
..|...--.|....-|.||+++..|.|+|+ ..|+-++.|++|||....|... +-..+ .-++.+ ++=|..=
T Consensus 138 ~SH~~petPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgpla-tsWhs~kf~np~~dGavLPIL~l 212 (793)
T COG3957 138 GSHVAPETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGPLA-TSWHSNKFLNPARDGAVLPILHL 212 (793)
T ss_pred ccccCCCCCCccCcCcchhHHHHHHHHhhc----CCCCcEEEEEecccccccCccc-cccccccccCccccCceeeEEEe
Confidence 456665444666667899999999998876 4599999999999987776522 22333 222322 4555566
Q ss_pred CCcccccccccccC-CchHHh--hcCCcceEEEcCCCHHHHHHHH
Q 018967 230 NHYGMGTAEWRAAK-SPSYYK--RGDYVPGLKVDGMDALAVKQAC 271 (348)
Q Consensus 230 N~~~i~~~~~~~~~-~~~~~~--~g~gipg~~VDG~D~~av~~a~ 271 (348)
|+|.|..+.-.... ..++.+ .|+|..-+.|+|.|+.++.+..
T Consensus 213 NGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~m 257 (793)
T COG3957 213 NGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLM 257 (793)
T ss_pred cceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhhH
Confidence 99998876543222 233444 4788888889998988855443
No 141
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=96.93 E-value=0.0031 Score=64.95 Aligned_cols=107 Identities=21% Similarity=0.169 Sum_probs=69.6
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCC-eEEEEecCCccccc--cc-------ccccC
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLP-AILVCENNHYGMGT--AE-------WRAAK 243 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LP-vI~Vv~NN~~~i~~--~~-------~~~~~ 243 (348)
.-++-|+|++.|. ...+|.++||=++-.- .-.|-+......| +|+|++||+-||-. |+ ++.+.
T Consensus 426 G~vSTA~Gi~~a~-----~~ptv~liGDLS~lhD--~NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~F~ 498 (566)
T COG1165 426 GTVSTALGIARAT-----QKPTVALIGDLSFLHD--LNGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERLFG 498 (566)
T ss_pred hhHHHHhhhhhhc-----CCceEEEEechhhhhc--cchHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcchHHHhcC
Confidence 3456688888763 4569999999998421 1125555666677 46777777777643 11 11121
Q ss_pred ---CchHHhh--cCCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEEec
Q 018967 244 ---SPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDTYR 292 (348)
Q Consensus 244 ---~~~~~~~--g~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R 292 (348)
.-||... .|++.+.+++ .+.++.+++..+..+ .|-.|||++|-|
T Consensus 499 tPh~ldF~~la~~y~l~y~~~~--s~~~l~~~~~~~~~~---~g~~viEvkt~r 547 (566)
T COG1165 499 TPHGLDFAHLAATYGLEYHRPQ--SWDELGEALDQAWRR---SGTTVIEVKTDR 547 (566)
T ss_pred CCCCCCHHHHHHHhCccccccC--cHHHHHHHHhhhccC---CCcEEEEEecCh
Confidence 2356553 3788777775 477888888776642 778999999876
No 142
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=96.35 E-value=0.06 Score=61.15 Aligned_cols=94 Identities=16% Similarity=0.119 Sum_probs=64.1
Q ss_pred cEEEEEeCCccc-cchhHHHHHHHHHHCCCCeEEEEecCC-ccccc-------cccccc---------CCchHHh--hcC
Q 018967 193 TVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNH-YGMGT-------AEWRAA---------KSPSYYK--RGD 252 (348)
Q Consensus 193 ~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~-------~~~~~~---------~~~~~~~--~g~ 252 (348)
.-+|++.|||.+ ..| +..+.-+...+.++.+||.||. |+.+. |....+ .-.|... .++
T Consensus 952 ~sv~~~~GDG~~~diG--~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 952 KSVWIIGGDGWAYDIG--YGGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred ceeEEEecchhhhccC--ccchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 369999999965 666 2347777788999888887777 76532 211110 1112222 347
Q ss_pred CcceE-EEc-CCCHHHHHHHHHHHHHHhccCCCEEEEEEEe
Q 018967 253 YVPGL-KVD-GMDALAVKQACKFAKEHALKNGPMILEMDTY 291 (348)
Q Consensus 253 gipg~-~VD-G~D~~av~~a~~~A~~~ar~~gP~lIe~~t~ 291 (348)
|.+++ ++. |-++.++.+++++|.++ +||.+|++.+.
T Consensus 1030 g~~yvA~~~~~~~~~~~~~~~~~A~~~---~G~s~i~~~~p 1067 (1165)
T TIGR02176 1030 GYVYVAQVSMGANMQQTLKAFREAEAY---DGPSIVIAYSP 1067 (1165)
T ss_pred CCCEEEEEecccCHHHHHHHHHHHHcC---CCCEEEEEECC
Confidence 76665 554 56899999999999875 99999999864
No 143
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=96.04 E-value=0.082 Score=44.97 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhhcCCc
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRGDYV 254 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~g~gi 254 (348)
..+|.|.+++- ...++++..|.|..+ ..+.+-.|...++|+|+++...+.. ..... ....+.....-.+
T Consensus 48 ~~~A~G~a~~~----~~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~~~~~~~~---~q~~~~~~~~~~~ 117 (154)
T cd06586 48 AGAAAGYARAG----GPPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGISAQAKQT---FQSMFDLGMYRSI 117 (154)
T ss_pred HHHHHHHHHhh----CCEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCChhhhccCc---ccccCHHHHHHHh
Confidence 44566666552 322233344888875 4677778888899999999766542 11111 1111111111123
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (348)
+...+--.++.+..+.+..|...+.. .||++|++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 118 PEANISSPSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred hheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 32322224566677777777776666 89999976
No 144
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=95.66 E-value=0.18 Score=44.42 Aligned_cols=100 Identities=16% Similarity=0.097 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~gi 254 (348)
+|-|.+.+ .++-.++++..|=|.+|. .-++..|..-++|+|+|+-+.... .+.. .....|... +.+--
T Consensus 53 mA~gyar~---tg~~~v~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~I~g~~~~~~~~~~---~~q~~d~~~~~~~~tk 123 (164)
T cd07039 53 AASAEAKL---TGKLGVCLGSSGPGAIHL---LNGLYDAKRDRAPVLAIAGQVPTDELGTD---YFQEVDLLALFKDVAV 123 (164)
T ss_pred HHHHHHHH---hCCCEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCcccccCCC---CCcccCHHHHHHHhhc
Confidence 45566544 234566777778888873 456777888999999998765532 1111 011112111 11112
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (348)
...+|+ ++..+.+++.+|+..+.. .||+.|++
T Consensus 124 ~~~~v~--~~~~~~~~i~~A~~~a~~~~GPV~l~i 156 (164)
T cd07039 124 YNETVT--SPEQLPELLDRAIRTAIAKRGVAVLIL 156 (164)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 224554 788888888888888777 89999997
No 145
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=95.46 E-value=0.2 Score=43.03 Aligned_cols=105 Identities=20% Similarity=0.269 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHhhcCC
Q 018967 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKRGDY 253 (348)
Q Consensus 175 ~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~~g~g 253 (348)
...+|.|.+++. ++-.++++..|=|..+ ..+++..|...++|+|++.-+... .............++.+ .+-
T Consensus 46 A~~~A~g~~~~~---~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~~~~~~~~~~q~~d~~~~~~-~~~ 118 (155)
T cd07035 46 AVGMADGYARAT---GKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRPTAGEGRGAFQEIDQVALFR-PIT 118 (155)
T ss_pred HHHHHHHHHHHH---CCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCccccccCCcccccCHHHHHH-HHh
Confidence 344556665552 2223444444666666 467888888999999988865443 22211100000111111 111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEM 288 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~ 288 (348)
....++ .++.++.+.+.+|...+.. +||+.|++
T Consensus 119 ~~~~~i--~~~~~~~~~i~~A~~~a~~~~~gPv~l~i 153 (155)
T cd07035 119 KWAYRV--TSPEEIPEALRRAFRIALSGRPGPVALDL 153 (155)
T ss_pred ceEEEc--CCHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 223455 4788899999999988866 58999986
No 146
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=95.46 E-value=0.059 Score=60.71 Aligned_cols=113 Identities=19% Similarity=0.099 Sum_probs=75.2
Q ss_pred CCccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccc-cchhHHHHHHHHHHCCCCeEEEEecCCc-cccccccc--ccC
Q 018967 168 GHGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWR--AAK 243 (348)
Q Consensus 168 ~~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~--~~~ 243 (348)
+...||+....++|.+.+. +++.+|+++|||.+ ..|. -++.-|..-+.+++++|.+|.. +|+..++. ...
T Consensus 479 ~~~~MG~eg~~~~G~a~f~----~~~hv~a~iGDgTffHSG~--~al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~~~ 552 (1165)
T PRK09193 479 TFTQMGGEGVPWIGQAPFT----DEKHVFQNLGDGTYFHSGL--LAIRAAVAAGVNITYKILYNDAVAMTGGQPVDGGLS 552 (1165)
T ss_pred eeeccCCcchhhceecccc----CCCcEEEEeccccchhcCH--HHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCcc
Confidence 4567888888888987652 34679999999998 4553 3477788889999888888876 88654432 223
Q ss_pred CchHHh--hcCCcceEEEcCCCHHHHH-----------------HHHHHHHHHhcc-CCCEEEEEE
Q 018967 244 SPSYYK--RGDYVPGLKVDGMDALAVK-----------------QACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 244 ~~~~~~--~g~gipg~~VDG~D~~av~-----------------~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
..++.. ++.|+.-+.|=-.|+.... +++++++ |+ +|+++|...
T Consensus 553 ~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~l---r~~~GvsViI~~ 615 (1165)
T PRK09193 553 VPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQREL---REIPGVTVLIYD 615 (1165)
T ss_pred hhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHH---hcCCCcEEEEEc
Confidence 345544 4678776655333555543 4444444 35 899888654
No 147
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=95.44 E-value=0.051 Score=61.31 Aligned_cols=112 Identities=18% Similarity=0.090 Sum_probs=73.2
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccc-cchhHHHHHHHHHHCCCCeEEEEecCCc-cccccccccc--CC
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAA--KS 244 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~--~~ 244 (348)
...||+....++|++.+. .++.+|+++|||.+ ..|.. ++.-|..-+.+++++|.+|.. +|+..++.-. ..
T Consensus 467 ~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~~--al~~AV~~~~nit~~IL~N~~tAMTGgQp~~g~i~v 540 (1159)
T PRK13030 467 LTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGSL--AIRQAVAAGANITYKILYNDAVAMTGGQPVDGSISV 540 (1159)
T ss_pred eeccCccchhhceecccc----CCCCEEEEeccchhhhcCHH--HHHHHHhcCCCeEEEEEeCCcccccCCCCCCCCCCH
Confidence 457888888888888662 34569999999998 46643 688888889999988888887 8866443221 11
Q ss_pred chHHh--hcCCcceEEEcCCCHHH----------------HHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 245 PSYYK--RGDYVPGLKVDGMDALA----------------VKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 245 ~~~~~--~g~gipg~~VDG~D~~a----------------v~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
+.+.. ++.|+.-+.|=-.||.. ..+++++++ |+ +||++|...
T Consensus 541 ~~i~~~~~a~Gv~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l---~~~~GvsViI~~ 601 (1159)
T PRK13030 541 PQIARQVEAEGVSRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQREL---RETPGVTVLIYD 601 (1159)
T ss_pred HHHHHHHHhCCCcEEEEecCChhhccccccCCCcccccHHHHHHHHHHH---hcCCCcEEEEEc
Confidence 23222 46787766553234433 234444444 24 889888654
No 148
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=95.43 E-value=0.26 Score=42.59 Aligned_cols=87 Identities=23% Similarity=0.116 Sum_probs=56.8
Q ss_pred EEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHhhc-CC--cceEEEcCCCHHHHHH
Q 018967 194 VTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKRG-DY--VPGLKVDGMDALAVKQ 269 (348)
Q Consensus 194 ~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~~g-~g--ipg~~VDG~D~~av~~ 269 (348)
++++..|-|..| ....|-.|...+.|+|+++-+... ..+.+ ... ..++.... .+ .+..++ .++.++.+
T Consensus 67 v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 138 (160)
T cd07034 67 AMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRPGPSTGLP-KPD--QSDLMAARYGGHPWPVLAP--SSVQEAFD 138 (160)
T ss_pred EEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCCCCCCCCC-CcC--cHHHHHHHhCCCCEEEEeC--CCHHHHHH
Confidence 778888999887 355677787889999999866443 22211 000 11111111 12 333444 47899999
Q ss_pred HHHHHHHHhcc-CCCEEEEE
Q 018967 270 ACKFAKEHALK-NGPMILEM 288 (348)
Q Consensus 270 a~~~A~~~ar~-~gP~lIe~ 288 (348)
.++.|...++. ++|++|..
T Consensus 139 ~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 139 LALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred HHHHHHHHHHHhCCCEEEEc
Confidence 99999998888 88998865
No 149
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=95.13 E-value=0.24 Score=43.10 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHH-HHHHCCCCeEEEEecCCcccccccccccCCchHHhhcCCc
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALN-IAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYV 254 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn-~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~g~gi 254 (348)
+++|.|+|+. + -++++..+ ..+.+ ..++.+. .++.+++|+++++...+++.+..........++.-. -.+
T Consensus 52 vg~A~GlA~~----G-~~pi~~~~--~~f~~-ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~~~~a~~-~~i 122 (156)
T cd07033 52 VGIAAGLALH----G-LKPFVSTF--SFFLQ-RAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGIEDIALL-RAI 122 (156)
T ss_pred HHHHHHHHHC----C-CeEEEEEC--HHHHH-HHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccchHHHHHHh-cCC
Confidence 3556677653 2 44555555 44433 3455565 999999999999887665432211111111222221 246
Q ss_pred ceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 255 PGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 255 pg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
|++.| .-.|+.+++..+++|++. ++|++|-+
T Consensus 123 Pg~~v~~Ps~~~~~~~ll~~a~~~---~~P~~irl 154 (156)
T cd07033 123 PNMTVLRPADANETAAALEAALEY---DGPVYIRL 154 (156)
T ss_pred CCCEEEecCCHHHHHHHHHHHHhC---CCCEEEEe
Confidence 66654 456899999999999863 77998754
No 150
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=94.19 E-value=1.1 Score=39.19 Aligned_cols=104 Identities=11% Similarity=0.059 Sum_probs=64.2
Q ss_pred cchhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHH-HCCCCeEEEEecCCc-ccccccccccCCchHHh-
Q 018967 173 GAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAA-LWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK- 249 (348)
Q Consensus 173 G~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa-~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~- 249 (348)
+.+..+|.|..++ .+..++|+.+=|.. ...-++..|. ..++|+|+++-.-+. +...+.. .....+..
T Consensus 44 e~aa~~aAg~~~~-----~~~~~v~~~~sG~g---n~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q--~~~g~~~~~ 113 (157)
T TIGR03845 44 EEGVGICAGAYLA-----GKKPAILMQSSGLG---NSINALASLNKTYGIPLPILASWRGVYKEKIPAQ--IPMGRATPK 113 (157)
T ss_pred HHHHHHHHHHHHh-----cCCcEEEEeCCcHH---HHHHHHHHHHHcCCCCEEEEEeccCCCCCCCccc--cchhhhhHH
Confidence 4555666666543 45567888877743 3555677788 899999999843332 2111111 00001111
Q ss_pred --hcCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 250 --RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 250 --~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
...+++...++ +++++ .++.+|...+.+ +||+.|-+.
T Consensus 114 ~l~~~~i~~~~i~--~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 114 LLDTLGIPYTIPR--EPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred HHHHcCCCeEEeC--CHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 11456777774 58888 999999988877 899988663
No 151
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=93.87 E-value=0.23 Score=56.17 Aligned_cols=115 Identities=15% Similarity=0.071 Sum_probs=70.9
Q ss_pred CccccchhHHHHHHHHHHHhCCCCcEEEEEeCCccc-cchhHHHHHHHHHHCCCCeEEEEecCCc-cccccccccc--CC
Q 018967 169 HGIVGAQIPLGCGLAFAQKYSKDETVTFALYGDGAA-NQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAA--KS 244 (348)
Q Consensus 169 ~g~lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~-~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~--~~ 244 (348)
...||+....++|.+-+. ++..+|+++|||.+ ..|. -++.-|..-+.+++++|.+|.. +|+..++.-. ..
T Consensus 494 ~~~MGgeg~~~~G~a~f~----~~~hv~aniGDgTffHSG~--~alr~AV~~~~nit~kIL~N~avAMTGgQp~~G~~~v 567 (1186)
T PRK13029 494 FSQMGGEGVAWIGQMPFS----RRRHVFQNLGDGTYFHSGL--LAIRQAIAAGVNITYKILYNDAVAMTGGQPVDGVLTV 567 (1186)
T ss_pred eeccCcchhhheeecccC----CCCCEEEEeccccchhcCH--HHHHHHHhcCCCEEEEEEeCcchhccCCCCCCCcCCH
Confidence 467788888888887552 34569999999998 4553 3477888889999888888886 8865443211 11
Q ss_pred chHHh--hcCCcceEEEcCCCHHHHH--------------HHHHHHHHHhcc-CCCEEEEEE
Q 018967 245 PSYYK--RGDYVPGLKVDGMDALAVK--------------QACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 245 ~~~~~--~g~gipg~~VDG~D~~av~--------------~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
+.+.. ++.|+.-+.|=-.|+..+. +.++...+..|+ +|+++|...
T Consensus 568 ~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr~~~GvsViI~~ 629 (1186)
T PRK13029 568 PQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELREVPGVSVLIYD 629 (1186)
T ss_pred HHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHhcCCCcEEEEEc
Confidence 23322 5677766655222443332 223333333335 888887653
No 152
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=93.73 E-value=0.37 Score=42.36 Aligned_cols=106 Identities=21% Similarity=0.163 Sum_probs=61.0
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--h
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--R 250 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~ 250 (348)
...-+|.|.+++. ++-.++++..|=|.+|. .-++..|...+.|+|+|+-+-.. ..... ..+ ...|... +
T Consensus 50 ~A~~~A~g~ar~~---g~~~v~~~~~GpG~~n~---~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q-~~~d~~~~~~ 121 (172)
T PF02776_consen 50 GAAFMADGYARAT---GRPGVVIVTSGPGATNA---LTGLANAYADRIPVLVITGQRPSAGEGRG-AFQ-QEIDQQSLFR 121 (172)
T ss_dssp HHHHHHHHHHHHH---SSEEEEEEETTHHHHTT---HHHHHHHHHTT-EEEEEEEESSGGGTTTT-STT-SSTHHHHHHG
T ss_pred hhHHHHHHHHHhh---ccceEEEeecccchHHH---HHHHhhcccceeeEEEEecccchhhhccc-ccc-cchhhcchhc
Confidence 3445566666553 23344555555666653 34566688889999999876654 23211 111 0112221 1
Q ss_pred cCCcceEEEcCCCHHHHHHHHHHHHHHh-cc-CCCEEEEEE
Q 018967 251 GDYVPGLKVDGMDALAVKQACKFAKEHA-LK-NGPMILEMD 289 (348)
Q Consensus 251 g~gipg~~VDG~D~~av~~a~~~A~~~a-r~-~gP~lIe~~ 289 (348)
.+.-...+++ ++.++.+++++|+..+ .. .||+.|++-
T Consensus 122 ~~~k~~~~v~--~~~~~~~~~~~A~~~a~~~~~gPv~l~ip 160 (172)
T PF02776_consen 122 PVTKWSYRVT--SPDDLPEALDRAFRAATSGRPGPVYLEIP 160 (172)
T ss_dssp GGSSEEEEEC--SGGGHHHHHHHHHHHHHHCSTSEEEEEEE
T ss_pred cccchhcccC--CHHHHHHHHHHHHHHhccCCCccEEEEcC
Confidence 2333346674 5777788888888777 44 899999984
No 153
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=93.67 E-value=0.65 Score=46.46 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=74.4
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh-h-
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK-R- 250 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~-~- 250 (348)
+.+.+++|++++ +..+++...-+++. -.+|.+.+|+-..+|+++++.+... +.+-+.. ....|+.. +
T Consensus 59 aA~~~a~GAs~a------G~Ra~TaTSg~Gl~--lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p~~--~~q~D~~~~~~ 128 (376)
T PRK08659 59 ASMAAVIGASWA------GAKAMTATSGPGFS--LMQENIGYAAMTETPCVIVNVQRGGPSTGQPTK--PAQGDMMQARW 128 (376)
T ss_pred HHHHHHHhHHhh------CCCeEeecCCCcHH--HHHHHHHHHHHcCCCEEEEEeecCCCCCCCCCC--cCcHHHHHHhc
Confidence 456677888776 34455554444443 3589999999999998877776542 2222221 11123222 2
Q ss_pred c-CC-cceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCC
Q 018967 251 G-DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS 299 (348)
Q Consensus 251 g-~g-ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~ 299 (348)
| +| +|-+.+.-.|+.+++.-...|.+.+.+ .-|++|-..++ -+|+..
T Consensus 129 ~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~~ 178 (376)
T PRK08659 129 GTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV--VGHMRE 178 (376)
T ss_pred ccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH--hhCCcc
Confidence 2 33 555666778999999999999988877 88999999884 778753
No 154
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=93.13 E-value=1.1 Score=39.18 Aligned_cols=106 Identities=12% Similarity=0.120 Sum_probs=61.6
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-ccccc--cccc--CC-chH
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAE--WRAA--KS-PSY 247 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~--~~~~--~~-~~~ 247 (348)
...-+|-|.+.+. .-.++++..|=|.+| ..-++..|...+.|+|+++-+.... .++.. .... .. .|.
T Consensus 46 ~A~~mA~gyar~t----~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~ 118 (162)
T cd07038 46 NAGYAADGYARVK----GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVF 118 (162)
T ss_pred HHHHHHHHHHHhh----CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHH
Confidence 3334556666543 234455556888777 3456778888999999998765432 11110 0000 00 011
Q ss_pred Hh--hcCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 018967 248 YK--RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (348)
Q Consensus 248 ~~--~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (348)
.. +.+--...+|. +++.+.+++++|...+.+ +||++|++
T Consensus 119 ~~~~~~~tk~~~~v~--~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 119 LKMFEEITCAAARLT--DPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHHHhheeEEEEeC--CHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 11 11222234553 677888888888888877 89999986
No 155
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=92.69 E-value=1.2 Score=44.26 Aligned_cols=113 Identities=17% Similarity=0.135 Sum_probs=75.6
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCch-HHh-h-
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS-YYK-R- 250 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~-~~~-~- 250 (348)
+.+.+++|+++| +.++++.+-+..+. -.+|.+.+|+-..+|+++++.+-. +-++.. .+....| ++. +
T Consensus 59 aA~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~e~P~v~v~v~R~-~p~~g~-t~~eq~D~~~~~~~ 128 (352)
T PRK07119 59 AAINMVYGAAAT------GKRVMTSSSSPGIS--LKQEGISYLAGAELPCVIVNIMRG-GPGLGN-IQPSQGDYFQAVKG 128 (352)
T ss_pred HHHHHHHHHHhh------CCCEEeecCcchHH--HHHHHHHHHHHccCCEEEEEeccC-CCCCCC-CcchhHHHHHHHhc
Confidence 456677888876 45577777777765 368999999999999887776643 211111 1111112 222 2
Q ss_pred -cCC-cceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCC
Q 018967 251 -GDY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSM 298 (348)
Q Consensus 251 -g~g-ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~ 298 (348)
|.| .+-+..+-.|+.++++-..+|.+.+.+ .-|+++-..++ -+|+.
T Consensus 129 ~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~~ 177 (352)
T PRK07119 129 GGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQMM 177 (352)
T ss_pred CCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCce
Confidence 222 444566778999999999999988877 88999999885 36654
No 156
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=91.95 E-value=1.1 Score=39.52 Aligned_cols=104 Identities=20% Similarity=0.162 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCccc-ccccccccCCchHHh--hcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAEWRAAKSPSYYK--RGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i-~~~~~~~~~~~~~~~--~g~g 253 (348)
-+|-|.|.+ .++-.++++..|=|.+| ..-++..|...+.|+|+|+-+-.... ... .-+ ..|... +..-
T Consensus 49 ~mAdgyar~---sg~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~-~~q--~~d~~~l~~~vt 119 (162)
T cd07037 49 FFALGLAKA---SGRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTADRPPELRGTG-ANQ--TIDQVGLFGDYV 119 (162)
T ss_pred HHHHHHHHh---hCCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECCCCHHhcCCC-CCc--ccchhhhcccee
Confidence 345566544 34445666667888877 24457778888999999986544321 110 000 111111 0000
Q ss_pred cceEEE-cCCC---HHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 254 VPGLKV-DGMD---ALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 254 ipg~~V-DG~D---~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
-...+| +..+ ...+.+.+++|+..++. .||++|++-
T Consensus 120 k~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP 161 (162)
T cd07037 120 RWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP 161 (162)
T ss_pred eEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence 111233 2122 22266666777666655 699999873
No 157
>PTZ00089 transketolase; Provisional
Probab=91.85 E-value=1.1 Score=48.18 Aligned_cols=110 Identities=20% Similarity=0.162 Sum_probs=70.3
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.+. +.+|.|+|+. +.-.++++.+. .|.+ -.++.+.+++..+|||+||+...+.+.+.......+..|+
T Consensus 408 ~GIaEq~mv~~AaGlA~~----~G~~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~iedi 480 (661)
T PTZ00089 408 FGVREHAMCAIMNGIAAH----GGFIPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVETL 480 (661)
T ss_pred eeecHHHHHHHHHHHHHc----CCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcccHHHH
Confidence 4555444 3567777752 22255666554 6766 7788899999999999999988887654322222222344
Q ss_pred HhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
.-. -.+|.+.| .=-|..++..+++.|++. .++|+.|-+
T Consensus 481 a~l-R~iPn~~V~~PaD~~E~~~~l~~al~~--~~gP~~irl 519 (661)
T PTZ00089 481 ALL-RATPNLLVIRPADGTETSGAYALALAN--AKTPTILCL 519 (661)
T ss_pred HHH-hcCCCcEEEecCCHHHHHHHHHHHHHc--CCCCEEEEe
Confidence 331 13565544 335788899999888852 379998865
No 158
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=90.58 E-value=1.8 Score=38.27 Aligned_cols=98 Identities=21% Similarity=0.159 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHH-HHHHHC--------CCCeEEEEecCCcccccccccccCCch
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEAL-NIAALW--------DLPAILVCENNHYGMGTAEWRAAKSPS 246 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Eal-n~Aa~~--------~LPvI~Vv~NN~~~i~~~~~~~~~~~~ 246 (348)
+++|.|+|+. +.++|+.+.=+.+.. ..+|-+ +-++.+ ++|+++++..-+++...+. . ...+
T Consensus 57 vg~AaGlA~~------G~~pi~~~~~a~Fl~-ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~~~~G~t--h-s~~~ 126 (167)
T cd07036 57 VGLAVGAAMN------GLRPIVEIMFADFAL-PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGGIGGGAQ--H-SQSL 126 (167)
T ss_pred HHHHHHHHHc------CCEEEEEeehHHHHH-HHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCCCCcChh--h-hhhH
Confidence 4556666653 344554333334433 234444 434433 6999999865555422222 1 1223
Q ss_pred HHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018967 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (348)
Q Consensus 247 ~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (348)
..-. -.+|++.| .=.|+.+....++.++++ ++|+++-
T Consensus 127 ~a~l-r~iPg~~V~~Psd~~e~~~~l~~~~~~---~~P~~~~ 164 (167)
T cd07036 127 EAWF-AHIPGLKVVAPSTPYDAKGLLKAAIRD---DDPVIFL 164 (167)
T ss_pred HHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC---CCcEEEE
Confidence 2211 23566544 446888999999988864 8998863
No 159
>PRK08611 pyruvate oxidase; Provisional
Probab=90.11 E-value=2.9 Score=44.01 Aligned_cols=103 Identities=16% Similarity=0.134 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHh--hcCCc
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYV 254 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~--~g~gi 254 (348)
-+|.|.|.+ .+.-.++++..|=|.+|. .-++..|-..+.|+|+|+-+-........ .....|... +..--
T Consensus 57 ~mAdgyar~---tg~~gv~~~t~GPG~~N~---l~gla~A~~~~~Pvl~ItG~~~~~~~~~~--~~q~~d~~~l~~~itk 128 (576)
T PRK08611 57 LAAAAYAKL---TGKIGVCLSIGGPGAIHL---LNGLYDAKMDHVPVLALAGQVTSDLLGTD--FFQEVNLEKMFEDVAV 128 (576)
T ss_pred HHHHHHHHH---hCCceEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCcccccCCC--CccccCHHHHhhcccc
Confidence 345565543 345567777789999883 34577788889999999865443211110 011112221 11111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
-..+| +++..+.+++.+|+..+.+ .||+.|++-
T Consensus 129 ~~~~v--~~~~~~~~~l~~A~~~A~~~~GPV~l~iP 162 (576)
T PRK08611 129 YNHQI--MSAENLPEIVNQAIRTAYEKKGVAVLTIP 162 (576)
T ss_pred eeEEe--CCHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 12445 3688888888888877777 899999985
No 160
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=89.89 E-value=2.7 Score=44.77 Aligned_cols=109 Identities=12% Similarity=0.179 Sum_probs=63.4
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHH-HHHHHCCCCeEEEEecCCcccccccccccCCch
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEAL-NIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Eal-n~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~ 246 (348)
.|+-.++ +++|+|+|+. .-++++++ -+.|-+ ..+|-+ +.++..++||+|++...++. +..........|
T Consensus 357 ~GIaEq~~vg~AaGlA~~-----G~~Pvv~~--~a~Fl~-ra~dQi~~~~a~~~lpV~i~~~~~G~~-g~dG~tH~~~~d 427 (617)
T TIGR00204 357 VAIAEQHAVTFAAGMAIE-----GYKPFVAI--YSTFLQ-RAYDQVVHDVCIQKLPVLFAIDRAGIV-GADGETHQGAFD 427 (617)
T ss_pred CCccHHHHHHHHHHHHHC-----CCEEEEEe--cHHHHH-HHHHHHHHHHHhcCCCEEEEEECCCcC-CCCCcccccchH
Confidence 4444444 3567777652 23444444 456655 344444 66789999999999877763 211111112233
Q ss_pred HHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 018967 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (348)
Q Consensus 247 ~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (348)
+.-. -.+|+++| .=.|+.++..+++.|++. .++|++|-..
T Consensus 428 ia~l-r~iPgl~V~~Psd~~e~~~~l~~a~~~--~~~Pv~ir~~ 468 (617)
T TIGR00204 428 ISYL-RCIPNMVIMAPSDENELRQMLYTGYHY--DDGPIAVRYP 468 (617)
T ss_pred HHHH-hcCCCcEEEeeCCHHHHHHHHHHHHhC--CCCCEEEEEc
Confidence 3221 24666654 345788899999988863 2599988543
No 161
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=89.77 E-value=4.4 Score=35.79 Aligned_cols=114 Identities=21% Similarity=0.231 Sum_probs=61.2
Q ss_pred Cccccch-hHHHHHHHHHHHhCCC-CcEEEEEeCCccc-cchhHHHHHH-HHHHCCCCeEEEEecCCcccccccccccCC
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKD-ETVTFALYGDGAA-NQGQLFEALN-IAALWDLPAILVCENNHYGMGTAEWRAAKS 244 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~-~~~vv~~~GDGa~-~~G~~~Ealn-~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~ 244 (348)
.|+-.++ +++|+|+|++ ++ ..+++..++|=.. .|-..++.+. ....+++|+. |+..-+++.+.........
T Consensus 53 ~gIaE~~~vg~a~GlA~~----G~~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~s~ 127 (178)
T PF02779_consen 53 TGIAEQNMVGMAAGLALA----GGLRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHHSI 127 (178)
T ss_dssp --S-HHHHHHHHHHHHHH----SSSEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTSSS
T ss_pred cCcchhhccceeeeeeec----ccccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCccccccccccccc
Confidence 3444433 4677777765 22 3344455554333 0133455555 7788899998 6655555433222222222
Q ss_pred chHHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 018967 245 PSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (348)
Q Consensus 245 ~~~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (348)
.+..-. -.+|+++| .=.|+.++..+++.|++. ..++|++|-..
T Consensus 128 ~d~~~~-~~iPg~~v~~Psd~~e~~~~l~~a~~~-~~~~P~~ir~~ 171 (178)
T PF02779_consen 128 EDEAIL-RSIPGMKVVVPSDPAEAKGLLRAAIRR-ESDGPVYIREP 171 (178)
T ss_dssp SHHHHH-HTSTTEEEEE-SSHHHHHHHHHHHHHS-SSSSEEEEEEE
T ss_pred cccccc-ccccccccccCCCHHHHHHHHHHHHHh-CCCCeEEEEee
Confidence 333221 13666544 446899999999999973 12799988653
No 162
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=89.70 E-value=2.4 Score=44.63 Aligned_cols=110 Identities=19% Similarity=0.188 Sum_probs=70.6
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH-Hhh-c
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY-YKR-G 251 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~-~~~-g 251 (348)
+.+.+++|+++| +..+++.+--.+++ ...|.+.+|+-..+|+|+++.|-. +.++.........|+ ..+ +
T Consensus 248 aA~~~a~GAs~a------G~Ra~taTSg~Gl~--lm~E~l~~a~~~~~P~Vi~~~~R~-gpstg~~t~~eq~D~~~~~~~ 318 (562)
T TIGR03710 248 AAINMAIGASYA------GARAMTATSGPGFA--LMTEALGLAGMTETPLVIVDVQRG-GPSTGLPTKTEQSDLLFALYG 318 (562)
T ss_pred HHHHHHHhHHhc------CCceeecCCCCChh--HhHHHHhHHHhccCCEEEEEcccC-CCCCCCCCCccHHHHHHHhcC
Confidence 345667777776 33455555444444 468999999999999776665543 222211111111222 222 2
Q ss_pred -CC-cceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEec
Q 018967 252 -DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYR 292 (348)
Q Consensus 252 -~g-ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R 292 (348)
.| .|-+.+.-.|+.+++..+.+|.+.+.+ .-|+++-...|.
T Consensus 319 ~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l 362 (562)
T TIGR03710 319 GHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYL 362 (562)
T ss_pred CCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHH
Confidence 22 444666778999999999999988877 899999999885
No 163
>PRK07524 hypothetical protein; Provisional
Probab=89.67 E-value=3.5 Score=42.88 Aligned_cols=106 Identities=19% Similarity=0.160 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcC
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGD 252 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~ 252 (348)
.-+|-|.|.. .+.-.++++..|=|.+|. .-++.-|...+.|+|+++-.... ..+..........|... +.+
T Consensus 52 ~~mAdgyar~---tg~~gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~ 125 (535)
T PRK07524 52 GFMADGYARV---SGKPGVCFIITGPGMTNI---ATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGV 125 (535)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhh
Confidence 3345555533 344467777889999873 45677888899999988854432 11110000000012111 111
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
--...+| ++++.+.+.+.+|+..+++ .||++|++-
T Consensus 126 tk~~~~v--~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP 162 (535)
T PRK07524 126 AAFSHTL--MSAEDLPEVLARAFAVFDSARPRPVHIEIP 162 (535)
T ss_pred ceeEEEe--CCHHHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 1222455 4788999999999988876 699999885
No 164
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=89.46 E-value=1.7 Score=40.49 Aligned_cols=111 Identities=18% Similarity=0.136 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh-hcC
Q 018967 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK-RGD 252 (348)
Q Consensus 175 ~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~-~g~ 252 (348)
.+.+++|++++ +..+++..--.+++ ...|.|.+++-.++|+++++.|-.- +-+.+. .....|+.. +-+
T Consensus 48 A~~~~~GAs~a------G~ra~t~ts~~Gl~--lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~--~~~q~D~~~~~d~ 117 (230)
T PF01855_consen 48 AMEAAIGASAA------GARAMTATSGPGLN--LMAEPLYWAAGTELPIVIVVVQRAGPSPGLST--QPEQDDLMAARDS 117 (230)
T ss_dssp HHHHHHHHHHT------T--EEEEEECCHHH--HHCCCHHHHHHTT--EEEEEEEB---SSSB----SB-SHHHHHTTTS
T ss_pred HHHHHHHHHhc------CCceEEeecCCccc--ccHhHHHHHHHcCCCEEEEEEECCCCCCCCcC--cCChhHHHHHHhc
Confidence 35566777765 33344444333333 3567899999999998877765432 111111 111223332 435
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCC
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSM 298 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~ 298 (348)
+.+ .+.-.|+.+.++....|.+.+.+ .-|+++-...++. .|+.
T Consensus 118 ~~~--vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~-sh~~ 161 (230)
T PF01855_consen 118 GWI--VLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC-SHSR 161 (230)
T ss_dssp S-E--EEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC-TC-E
T ss_pred CeE--EEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh-cCcc
Confidence 553 44556888999888889888878 9999999998875 3554
No 165
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=89.40 E-value=2.5 Score=42.33 Aligned_cols=115 Identities=13% Similarity=0.100 Sum_probs=71.8
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccccccCCchHHhh-c
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAKSPSYYKR-G 251 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~~~~~~~~~~~-g 251 (348)
+.+.+++|+++| +..+++.+.-+++. -..|.+.+|+-..+|+++++.+-. -+.+.+.........+... +
T Consensus 58 aA~~~a~GAs~a------G~Ra~taTSg~G~~--lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~q~D~~~~~~~~ 129 (375)
T PRK09627 58 SGISVALGASMS------GVKSMTASSGPGIS--LKAEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVAQGDVNQAKNPT 129 (375)
T ss_pred HHHHHHHHHHhh------CCCEEeecCCchHH--HHhhHHHHHHhccCCEEEEEeccCCCcCCCCCccchHHHHHHhcCC
Confidence 345667777776 33455555444443 257999999999999887665532 2222222211111122222 2
Q ss_pred CC-cceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCC
Q 018967 252 DY-VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSM 298 (348)
Q Consensus 252 ~g-ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~ 298 (348)
+| .+-+.+.-.|+.+++....+|.+.+.+ .-|++|-..+ + -+|+.
T Consensus 130 hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~-~-lsh~~ 176 (375)
T PRK09627 130 HGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE-T-VGHMY 176 (375)
T ss_pred CCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch-H-HhCCe
Confidence 32 444566778999999999999888877 8899999888 3 37765
No 166
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=89.38 E-value=3.4 Score=43.17 Aligned_cols=102 Identities=14% Similarity=0.099 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~gi 254 (348)
+|.|.|.+ .++-.+|++..|=|.+| ..-++..|-.-+.|+|+++-.-... +... ...+.|.... .+-.
T Consensus 54 mAdgyar~---tgkpgv~~~t~GPG~~N---~l~~l~~A~~~~~Pvl~i~G~~~~~~~~~~---~~q~~d~~~l~~~vtk 124 (549)
T PRK06457 54 AASVEAKI---TGKPSACMGTSGPGSIH---LLNGLYDAKMDHAPVIALTGQVESDMIGHD---YFQEVNLTKLFDDVAV 124 (549)
T ss_pred HHHHHHHH---hCCCeEEEeCCCCchhh---hHHHHHHHHhcCCCEEEEecCCCccccCCC---cccccchhhhhcccee
Confidence 45565543 34456677778999988 3456778888899999998643321 1110 0001122111 1111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (348)
...+| .++..+.+.+++|+..+.. .||+.|++-.
T Consensus 125 ~~~~v--~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~ 159 (549)
T PRK06457 125 FNQIL--INPENAEYIIRRAIREAISKRGVAHINLPV 159 (549)
T ss_pred EEEEe--CCHHHHHHHHHHHHHHHhcCCCCEEEEeCH
Confidence 12344 4678888888888877767 8999999863
No 167
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=89.05 E-value=3.1 Score=43.42 Aligned_cols=103 Identities=21% Similarity=0.169 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~g 253 (348)
-+|.|.|.+ .+.-.++++..|=|.+| ..-++..|..-+.|+|+++-.-.. ..+.. . ....|... +.+-
T Consensus 52 ~~Adgyar~---sg~~gv~~~t~GpG~~n---~~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~-~--~q~~d~~~~~~~~t 122 (548)
T PRK08978 52 MAAIGYARA---TGKVGVCIATSGPGATN---LITGLADALLDSVPVVAITGQVSSPLIGTD-A--FQEIDVLGLSLACT 122 (548)
T ss_pred HHHHHHHHH---hCCCEEEEECCCCcHHH---HHHHHHHHhhcCCCEEEEecCCCccccCCC-C--CcccchhccccCce
Confidence 345565544 34556777788999987 345677788899999998754332 11110 0 00111111 1111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-...+|+ +++++...+++|+..++. .||+.|++-.
T Consensus 123 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (548)
T PRK08978 123 KHSFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIPK 159 (548)
T ss_pred eeEEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 2235664 788888899999888776 4999999863
No 168
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.85 E-value=3.5 Score=43.27 Aligned_cols=102 Identities=21% Similarity=0.231 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~gi 254 (348)
+|-|.|.+ .++-.++++..|=|.+|- .-++..|...+.|+|+|+-.-... .+. ......|... +.+-.
T Consensus 57 mAdgYar~---tg~~gv~~~t~GPG~~n~---l~gi~~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~l~~~~tk 127 (574)
T PRK07979 57 MADGLARA---TGEVGVVLVTSGPGATNA---ITGIATAYMDSIPLVVLSGQVATSLIGY---DAFQECDMVGISRPVVK 127 (574)
T ss_pred HHHHHHHH---hCCceEEEECCCccHhhh---HHHHHHHhhcCCCEEEEECCCChhccCC---CCCceecHHHHhhcccc
Confidence 45565543 344567888889998872 345777888899999998543321 111 0111112222 11112
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
...+| ++++++...+++|+..+.. .||++|++-.
T Consensus 128 ~~~~v--~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~ 163 (574)
T PRK07979 128 HSFLV--KQTEDIPQVLKKAFWLAASGRPGPVVVDLPK 163 (574)
T ss_pred eEEEe--CCHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 23456 3788999999999988877 5999999864
No 169
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=88.76 E-value=3.9 Score=42.74 Aligned_cols=105 Identities=14% Similarity=0.117 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHh--hcCCcc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYVP 255 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~--~g~gip 255 (348)
+|-|.|.+ .+.-.++++..|=|.+|. .-++..|..-+.|+|+|+-.................|... +..--.
T Consensus 55 mAdgyar~---tg~~gv~~~t~GPG~~N~---~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~ 128 (554)
T TIGR03254 55 AAAAAGFL---TQKPGVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKA 128 (554)
T ss_pred HHHHHHHH---hCCCEEEEEccCccHHhH---HHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhhee
Confidence 45555544 344567777789999883 3457788889999999986544321000000011112211 111122
Q ss_pred eEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 256 GLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 256 g~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
..+|+ ++.++.+.+.+|+..+.+ .||+.|++-.
T Consensus 129 ~~~v~--~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~ 163 (554)
T TIGR03254 129 AYRVL--RAEDIGIGIARAIRTAVSGRPGGVYLDLPA 163 (554)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 35664 688888888888877766 5899999863
No 170
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.59 E-value=3.6 Score=43.33 Aligned_cols=103 Identities=20% Similarity=0.192 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~g 253 (348)
-+|-|.|.. .++-.++++..|=|.+|. .-++.-|-..+.|+|+|+-.-... ... ......|.... .+-
T Consensus 66 ~mAdgyar~---tg~~gv~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~~~~---~~~q~~d~~~l~~~it 136 (570)
T PRK06725 66 HAAEGYARA---SGKVGVVFATSGPGATNL---VTGLADAYMDSIPLVVITGQVATPLIGK---DGFQEADVVGITVPVT 136 (570)
T ss_pred HHHHHHHHH---hCCCeEEEECCCccHHHH---HHHHHHHhhcCcCEEEEecCCCcccccC---CCCcccchhhhhhccc
Confidence 345566543 344567777789998872 345777778899999988533321 111 00111122211 111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-...+|+ +++.+.+.+++|+..+++ .||+.|++-.
T Consensus 137 k~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 173 (570)
T PRK06725 137 KHNYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIPK 173 (570)
T ss_pred eeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEcccc
Confidence 2224563 788999999999988877 5999999853
No 171
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=88.23 E-value=4.1 Score=43.19 Aligned_cols=103 Identities=21% Similarity=0.202 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~g 253 (348)
-+|.|.|.+ .+.-.++++..|=|.+|. .-++.-|..-+.|+|+|+-.-... +.. ......|.... .+-
T Consensus 83 ~~Adgyar~---tg~~gv~~~t~GPG~~N~---l~gl~~A~~~~~PllvI~G~~~~~~~~~---~~~q~~d~~~l~~~~t 153 (612)
T PRK07789 83 HAAEGYAQA---TGRVGVCMATSGPGATNL---VTPIADANMDSVPVVAITGQVGRGLIGT---DAFQEADIVGITMPIT 153 (612)
T ss_pred HHHHHHHHH---hCCCEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC---CcCcccchhhhhhcce
Confidence 345555543 344566777789998873 345777788899999998543321 111 00111122111 111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-...+| +++..+.+.+.+|+..+++ .||++|++-.
T Consensus 154 k~s~~v--~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 190 (612)
T PRK07789 154 KHNFLV--TDADDIPRVIAEAFHIASTGRPGPVLVDIPK 190 (612)
T ss_pred eEEEEc--CCHHHHHHHHHHHHHHHhcCCCceEEEEEcc
Confidence 112455 3788888999999887776 5899999863
No 172
>PRK07586 hypothetical protein; Validated
Probab=88.20 E-value=4 Score=42.15 Aligned_cols=103 Identities=16% Similarity=-0.024 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~g 253 (348)
-+|-|.|.. .+.-.++++..|=|.+| ..-++..|..-+.|+|+|+-+-... .... .....|.... .+-
T Consensus 53 ~mAdgyar~---tg~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~---~~q~~d~~~~~~~vt 123 (514)
T PRK07586 53 GAADGYARM---AGKPAATLLHLGPGLAN---GLANLHNARRARTPIVNIVGDHATYHRKYD---APLTSDIEALARPVS 123 (514)
T ss_pred HHHHHHHHH---HCCCEEEEecccHHHHH---HHHHHHHHHhcCCCEEEEecCCchhccCCC---cccccchhhhhcccc
Confidence 345555543 34446677788999886 2334667888899999998653321 1110 0001122221 111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-...+| .++.++.+.+.+|+..+.+ .||++|++-.
T Consensus 124 k~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 160 (514)
T PRK07586 124 GWVRRS--ESAADVAADAAAAVAAARGAPGQVATLILPA 160 (514)
T ss_pred ceeeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 112345 3688888888888888776 5999999864
No 173
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=88.15 E-value=4.2 Score=42.71 Aligned_cols=103 Identities=18% Similarity=0.195 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHh--hcCCcc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYVP 255 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~--~g~gip 255 (348)
+|-|.|.. .+.-.++++..|=|.+| ..-++..|-.-+.|+|+|+-.-....... ......|... +.+--.
T Consensus 57 mAdgyar~---tg~~gv~~vt~GPG~~N---~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~--~~~q~~d~~~l~~~itk~ 128 (574)
T PRK06466 57 MADGYARA---TGKTGVVLVTSGPGATN---AITGIATAYMDSIPMVVLSGQVPSTLIGE--DAFQETDMVGISRPIVKH 128 (574)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHHhcCCCEEEEecCCCccccCC--Ccccccchhhhhhcccee
Confidence 45566543 34456777888999988 34567778888999999985443311000 0011112211 111122
Q ss_pred eEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 256 GLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 256 g~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
..+|+ ++.++.+.+++|+..+.+ .||+.|++-.
T Consensus 129 s~~v~--~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~ 163 (574)
T PRK06466 129 SFMVK--HASEIPEIIKKAFYIAQSGRPGPVVVDIPK 163 (574)
T ss_pred EEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 24554 688889999999888776 5999999854
No 174
>PRK08266 hypothetical protein; Provisional
Probab=88.11 E-value=4.7 Score=41.95 Aligned_cols=104 Identities=18% Similarity=0.120 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccC-CchHHh--hcCC
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAK-SPSYYK--RGDY 253 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~-~~~~~~--~g~g 253 (348)
+|.|.|.. .+.-.++++..|=|.+|. .-++.-|..-+.|+|+++-.=.. .+.... .+.. ..|... +.+-
T Consensus 58 ~A~gyar~---tg~~~v~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~-~~~~~~~d~~~~~~~~t 130 (542)
T PRK08266 58 MAFGYARS---TGRPGVCSVVPGPGVLNA---GAALLTAYGCNSPVLCLTGQIPSALIGKGR-GHLHEMPDQLATLRSFT 130 (542)
T ss_pred HHHHHHHH---hCCCeEEEECCCCcHHHH---HHHHHHHHhhCCCEEEEecCCChhhccCCC-CcceecccHhhHHhhhc
Confidence 56666544 233456677779999873 45577788899999999853221 111100 0000 012111 1111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-...+|+ ++.++.+.+++|+..+.. .||+.|++-.
T Consensus 131 k~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~ 167 (542)
T PRK08266 131 KWAERIE--HPSEAPALVAEAFQQMLSGRPRPVALEMPW 167 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHhhCCCCcEEEEeCH
Confidence 2234564 678888888888877766 6999999864
No 175
>PRK12754 transketolase; Reviewed
Probab=87.89 E-value=3.8 Score=44.12 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=69.0
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.++ +.+|.|+|+- +.-.+.++.+ ..|.+ ..++++.+++..++||++|....+++.+.......+-.|+
T Consensus 407 ~GIaE~~Mv~iaaGlA~~----~G~~Pf~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iEdl 479 (663)
T PRK12754 407 YGVREFGMTAIANGIALH----GGFLPYTSTF--LMFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQV 479 (663)
T ss_pred eccchhhHHHHHhhHHhc----CCCeEEEEee--HHHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHHHH
Confidence 4444444 3666777752 1123333333 35655 7899999999999999999988887665432222233344
Q ss_pred Hh-hcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 248 YK-RGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 248 ~~-~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
+- |+ +|++.| .=-|..++.++++.|+++ .+||+.|-+
T Consensus 480 a~lR~--iPn~~V~~PaD~~E~~~~~~~a~~~--~~gP~yirl 518 (663)
T PRK12754 480 ASLRV--TPNMSTWRPCDQVESAVAWKYGVER--QDGPTALIL 518 (663)
T ss_pred HHHhc--CCCcEEecCCCHHHHHHHHHHHHhC--CCCCEEEEe
Confidence 43 33 555543 445788899999988863 379997654
No 176
>PRK07064 hypothetical protein; Provisional
Probab=87.85 E-value=4.8 Score=41.83 Aligned_cols=105 Identities=19% Similarity=0.112 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC-cccccccccccCCchHHhh--cCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH-YGMGTAEWRAAKSPSYYKR--GDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~~i~~~~~~~~~~~~~~~~--g~gi 254 (348)
+|.|.|.+ .++-.++++..|=|.+| ..-++..|-.-+.|+|+++-+-. ..+...........|.... .+--
T Consensus 56 ~A~gyar~---tg~~~v~~~t~GpG~~N---~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~~~~~~~tk 129 (544)
T PRK07064 56 MADAHARV---SGGLGVALTSTGTGAGN---AAGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQLTMLRAVSK 129 (544)
T ss_pred HHHHHHHh---cCCCeEEEeCCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHHHHhhhhcc
Confidence 45566543 34446777778999988 34567778889999999986422 1111100000001122111 1111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
...+| +++.++.+++.+|+..+.. .||+.|++-.
T Consensus 130 ~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 165 (544)
T PRK07064 130 AAFRV--RSAETALATIREAVRVALTAPTGPVSVEIPI 165 (544)
T ss_pred eEEEe--CCHHHHHHHHHHHHHHhccCCCCcEEEEeCH
Confidence 23456 3688888888888877765 6999999863
No 177
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=87.79 E-value=4.2 Score=42.63 Aligned_cols=103 Identities=22% Similarity=0.132 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~g 253 (348)
-+|.|.|.. .+.-.++++..|=|.+| ..-++..|-..+.|+|++.-.-... .... .....|... +.+-
T Consensus 57 ~~Adgyar~---tg~~gv~~~t~GpG~~N---~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~---~~q~~d~~~i~~~~t 127 (572)
T PRK06456 57 HAADGYARA---SGVPGVCTATSGPGTTN---LVTGLITAYWDSSPVIAITGQVPRSVMGKM---AFQEADAMGVFENVT 127 (572)
T ss_pred HHHHHHHHh---hCCCEEEEeCCCCCHHH---HHHHHHHHHhhCCCEEEEecCCCccccCCC---Cccccchhhhhhccc
Confidence 345565543 34445666678999988 2445777888899999987543321 1110 000111111 1111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-...+| ++++++.+++.+|+..+++ .||+.|++-.
T Consensus 128 k~~~~v--~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 164 (572)
T PRK06456 128 KYVIGI--KRIDEIPQWIKNAFYIATTGRPGPVVIDIPR 164 (572)
T ss_pred eeEEEe--CCHHHHHHHHHHHHHHHhcCCCCcEEEecCh
Confidence 122455 4788888888888887776 5999999853
No 178
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=87.76 E-value=5.7 Score=41.87 Aligned_cols=102 Identities=15% Similarity=0.141 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~g 253 (348)
-+|.|.|.+ .+.-.++++..|=|++| ..-++..|-..+.|+|+|+-.-.. .+... ..+ ..|... +.+-
T Consensus 57 ~~Adgyar~---tg~~gv~~~t~GPG~~n---~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~-~~q--~~d~~~l~~~~t 127 (588)
T PRK07525 57 HMADGYTRV---TGRMGMVIGQNGPGITN---FVTAVATAYWAHTPVVLVTPQAGTKTIGQG-GFQ--EAEQMPMFEDMT 127 (588)
T ss_pred HHHHHHHHH---hCCCEEEEEcCCccHHH---HHHHHHHHhhcCCCEEEEeCCCCcccCCCC-CCc--ccchhhhhhhhe
Confidence 345555543 23446777778999987 344577788889999999832111 11100 000 111111 1111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
-...+| .++..+.+.+.+|+..++. .||+.|++-
T Consensus 128 k~~~~i--~~~~~~~~~i~rA~~~A~~~~GPV~i~iP 162 (588)
T PRK07525 128 KYQEEV--RDPSRMAEVLNRVFDKAKRESGPAQINIP 162 (588)
T ss_pred eEEEEC--CCHHHHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 112445 4788888888888888877 899999985
No 179
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=87.44 E-value=4.1 Score=43.77 Aligned_cols=110 Identities=22% Similarity=0.216 Sum_probs=65.5
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.+. +.+|.|+|+. +.-.++++.+ ..+.+ ..++++.+++..++||++|....+++.+.......+-.++
T Consensus 401 ~GIaEq~mv~~AaGlA~~----gG~~p~~~tf--~~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~iedi 473 (653)
T TIGR00232 401 YGVREFAMGAIMNGIALH----GGFKPYGGTF--LMFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQPIEQL 473 (653)
T ss_pred ecccHHHHHHHHHHHHHc----CCCeEEEEEh--HHHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCCHHHH
Confidence 4544443 3566666652 1123333333 35554 6678899999999999999988777654322222222343
Q ss_pred HhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
+-. -.+|++.| .=-|..++..+++.|++. .++|++|-+
T Consensus 474 a~l-r~iPn~~v~~PaD~~E~~~~~~~a~~~--~~gP~~irl 512 (653)
T TIGR00232 474 ASL-RAIPNLSVWRPCDGNETAAAWKYALES--QDGPTALIL 512 (653)
T ss_pred HHH-hcCCCCEEEeeCCHHHHHHHHHHHHhc--CCCcEEEEE
Confidence 321 13555433 335788899999988842 389998854
No 180
>PRK11269 glyoxylate carboligase; Provisional
Probab=87.35 E-value=5.3 Score=42.17 Aligned_cols=103 Identities=12% Similarity=0.120 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhC-CCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcC
Q 018967 177 PLGCGLAFAQKYS-KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGD 252 (348)
Q Consensus 177 p~A~G~A~A~k~~-~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~ 252 (348)
-+|.|.|.+ . ++-.++++..|=|.+|. .-++..|..-+.|+|+++-+-... .... .....|... +.+
T Consensus 56 ~mAdGYar~---t~g~~gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~---~~q~~d~~~l~~~i 126 (591)
T PRK11269 56 HMAEGYTRA---TAGNIGVCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRARLHKE---DFQAVDIESIAKPV 126 (591)
T ss_pred HHHHHHHHH---cCCCcEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCC---cccccChhhHhhcc
Confidence 345555543 3 34456777779988872 345777788899999998654431 1110 011112211 111
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-....+| .+++++...+++|+..+++ .||+.|++-.
T Consensus 127 tk~s~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 164 (591)
T PRK11269 127 TKWAVTV--REPALVPRVFQQAFHLMRSGRPGPVLIDLPF 164 (591)
T ss_pred eeEEEEc--CCHHHHHHHHHHHHHHHhhCCCCeEEEEeCh
Confidence 1112455 4788888999999888876 5899999863
No 181
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=87.34 E-value=4.9 Score=42.19 Aligned_cols=104 Identities=21% Similarity=0.188 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cC
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GD 252 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~ 252 (348)
.-+|.|.|.+ .++-.++++..|=|.+| ..-++.-|-.-+.|+|++.-.-... +... ..+ ..|.... .+
T Consensus 66 ~~~A~gyar~---tg~~gv~~~t~GPG~~N---~~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~-~~q--~~d~~~l~~~~ 136 (571)
T PRK07710 66 IHAAEGYARI---SGKPGVVIATSGPGATN---VVTGLADAMIDSLPLVVFTGQVATSVIGSD-AFQ--EADIMGITMPV 136 (571)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCccHHH---HHHHHHHHhhcCCCEEEEeccCCccccCCC-Ccc--ccchhhhhhcc
Confidence 3455666544 24445677777999887 3445777788899999987544321 1110 001 1111111 11
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-....+| .+++++.+.+++|+..++. .||+.|++-.
T Consensus 137 tk~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 174 (571)
T PRK07710 137 TKHNYQV--RKASDLPRIIKEAFHIATTGRPGPVLIDIPK 174 (571)
T ss_pred cceEEec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcCh
Confidence 1112344 4788888889998887776 5999999864
No 182
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=87.27 E-value=5.5 Score=42.27 Aligned_cols=102 Identities=20% Similarity=0.231 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHhh--cCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKR--GDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~~--g~g 253 (348)
-+|.|.|.. .++-.++++..|=|++|. .-++--|..-+.|+|+++-+-.. .+.+. .+.+.|.... ..-
T Consensus 74 ~aA~gyar~---tgk~gv~~~t~GPG~~n~---l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~---~~Qe~d~~~~~~~vt 144 (616)
T PRK07418 74 HAADGYARA---TGKVGVCFGTSGPGATNL---VTGIATAQMDSVPMVVITGQVPRPAIGTD---AFQETDIFGITLPIV 144 (616)
T ss_pred HHHHHHHHH---hCCCeEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCccccCCC---CcccccHHHHhhhcc
Confidence 345555543 344556777779999873 44577888899999998754322 11110 0111122111 111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
-...+|+ +++++.+++.+|+..+.+ .||++|++-
T Consensus 145 k~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPv~l~iP 180 (616)
T PRK07418 145 KHSYVVR--DPSDMARIVAEAFHIASSGRPGPVLIDIP 180 (616)
T ss_pred eeEEEeC--CHHHHHHHHHHHHHHHhcCCCCcEEEecc
Confidence 1124554 788899999999888876 499999875
No 183
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=87.21 E-value=4.7 Score=43.26 Aligned_cols=110 Identities=22% Similarity=0.292 Sum_probs=64.4
Q ss_pred CCccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHH-HHHHHCCCCeEEEEecCCcccccccccccCCc
Q 018967 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEAL-NIAALWDLPAILVCENNHYGMGTAEWRAAKSP 245 (348)
Q Consensus 168 ~~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Eal-n~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~ 245 (348)
..|+-.+. +++|.|+|+. .-+++++++. .|.+ ..++.+ +.++..++|++||+...++. +..........
T Consensus 365 d~GIaE~~mvg~AaGlA~~-----G~~P~v~~f~--~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~-g~dG~THq~~~ 435 (641)
T PRK12571 365 DVGIAEQHAVTFAAGLAAA-----GLKPFCAVYS--TFLQ-RGYDQLLHDVALQNLPVRFVLDRAGLV-GADGATHAGAF 435 (641)
T ss_pred ccCccHHHHHHHHHHHHHC-----CCEEEEEehH--HHHH-HHHHHHHHHHhhcCCCeEEEEECCCcC-CCCCccccccH
Confidence 34555544 3567777752 2344555543 4555 456655 66889999999998666552 11111111222
Q ss_pred hHHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 018967 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (348)
Q Consensus 246 ~~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (348)
|++-. -.+|++.| -=.|+.+++.+++.|+++ .++|++|-..
T Consensus 436 dia~l-r~iPnl~V~~Psd~~e~~~~l~~a~~~--~~~P~~ir~~ 477 (641)
T PRK12571 436 DLAFL-TNLPNMTVMAPRDEAELRHMLRTAAAH--DDGPIAVRFP 477 (641)
T ss_pred HHHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCcEEEEEe
Confidence 33321 13666544 345788999999998862 3799998654
No 184
>PRK12753 transketolase; Reviewed
Probab=87.17 E-value=4.5 Score=43.57 Aligned_cols=110 Identities=21% Similarity=0.220 Sum_probs=69.8
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.++ +.+|.|+|+- +.-.++++.+ +.|.+ ..++.+.+++..++||+||....+++.+.......+..|+
T Consensus 407 ~GIaEq~mv~~aaGlA~~----~G~~P~~~tf--~~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~iedl 479 (663)
T PRK12753 407 YGVREFGMTAIANGIAHH----GGFVPYTATF--LMFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQL 479 (663)
T ss_pred eeecHHHHHHHHHHHHHh----CCCeEEEEeh--HHHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccccHHHH
Confidence 4444443 4667777752 1223444444 36665 7899999999999999999998888764432222233344
Q ss_pred Hh-hcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 018967 248 YK-RGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (348)
Q Consensus 248 ~~-~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (348)
+- | .+|.+.| .=-|..++..+++.|++. .++|+.|-+.
T Consensus 480 a~lR--~iPn~~v~~PaD~~E~~~~~~~al~~--~~gP~~irl~ 519 (663)
T PRK12753 480 ASLR--LTPNFSTWRPCDQVEAAVAWKLAIER--HNGPTALILS 519 (663)
T ss_pred HHHh--cCCCCEEEccCCHHHHHHHHHHHHhc--CCCCEEEEec
Confidence 33 3 3555433 334788889999988862 2799887653
No 185
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=87.00 E-value=3.9 Score=40.77 Aligned_cols=111 Identities=17% Similarity=0.178 Sum_probs=61.4
Q ss_pred ccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccc-hhHHHHHHHHHHCCCCeEEEEecCCc-ccc-cccccccC--Cch
Q 018967 172 VGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQ-GQLFEALNIAALWDLPAILVCENNHY-GMG-TAEWRAAK--SPS 246 (348)
Q Consensus 172 lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~-G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~-~~~~~~~~--~~~ 246 (348)
=|.++++|.|+.+| .+++.+++.=.-+++. =...-+|+-...+++|++++|---+. +.- .|+..... .+.
T Consensus 35 E~~av~iaaG~~la-----tG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~G~~t~~ 109 (361)
T TIGR03297 35 EGAAVGLAAGAYLA-----TGKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQGRITLS 109 (361)
T ss_pred chHHHHHHHHHHHh-----cCCccEEEEecCchhhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHHhHHHHH
Confidence 46778888888877 2344444432222211 00122222245689999988854443 321 12111000 011
Q ss_pred HHhhcCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 247 YYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 247 ~~~~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
+- ...++|...++ .|.++..+++..|.+++.+ ++|+.|-+.
T Consensus 110 lL-~~~~i~~~~~~-~~~~~~~~~~~~a~~~~~~~~~p~a~l~~ 151 (361)
T TIGR03297 110 LL-DALEIPWEVLS-TDNDEALAQIERALAHALATSRPYALVVR 151 (361)
T ss_pred HH-HHcCCCEEECC-CChHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 11 24789988885 3556777778888877777 899876554
No 186
>PRK08322 acetolactate synthase; Reviewed
Probab=86.91 E-value=5.4 Score=41.48 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHhh--cCCc
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYV 254 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~--g~gi 254 (348)
-+|.|.|.+ .+.-.++++..|=|.+|. .-++.-|-.-+.|+|+++-+-........ .....|.... .+--
T Consensus 52 ~~A~gyar~---tg~~gv~~~t~GpG~~N~---~~~i~~A~~~~~Pll~i~g~~~~~~~~~~--~~q~~d~~~~~~~~tk 123 (547)
T PRK08322 52 FMAATYGRL---TGKAGVCLSTLGPGATNL---VTGVAYAQLGGMPMVAITGQKPIKRSKQG--SFQIVDVVAMMAPLTK 123 (547)
T ss_pred HHHHHHHHh---hCCCEEEEECCCccHhHH---HHHHHHHhhcCCCEEEEeccccccccCCC--ccccccHHHHhhhhee
Confidence 345555543 344556777778998873 44577788889999998854322110000 0111122111 1111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
...+| ++++.+.+.+.+|+..+.+ .||++|++-.
T Consensus 124 ~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (547)
T PRK08322 124 WTRQI--VSPDNIPEVVREAFRLAEEERPGAVHLELPE 159 (547)
T ss_pred EEEEe--CCHHHHHHHHHHHHHHHccCCCCcEEEEcCh
Confidence 12455 4788888888888888777 5899999863
No 187
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=86.91 E-value=6 Score=41.33 Aligned_cols=102 Identities=21% Similarity=0.210 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~g 253 (348)
-+|.|.|.. .+.-.++++..|=|.+| ..-++.-|-.-+.|+|+|+-.-.. .... ......|... +.+-
T Consensus 53 ~~Adgyar~---tg~~gv~~~t~GpG~~n---~l~~i~~A~~~~~Pvl~i~g~~~~~~~~~---~~~q~~d~~~~~~~~t 123 (558)
T TIGR00118 53 HAADGYARA---SGKVGVVLVTSGPGATN---LVTGIATAYMDSIPMVVFTGQVPTSLIGS---DAFQEADILGITMPIT 123 (558)
T ss_pred HHHHHHHHH---hCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEecCCCccccCC---CCCcccChhhhhcCcc
Confidence 345565543 34455777788999887 345677788889999998753221 1110 0000111111 1122
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
....+|+ ++.++.+.+.+|+..+.. .||+.|++-
T Consensus 124 k~~~~v~--~~~~~~~~v~~A~~~A~~~~~GPV~i~iP 159 (558)
T TIGR00118 124 KHSFQVK--SAEDIPRIIKEAFHIATTGRPGPVLVDLP 159 (558)
T ss_pred ceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEcC
Confidence 2234563 688888888888877766 589999985
No 188
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=86.86 E-value=7.4 Score=39.17 Aligned_cols=112 Identities=16% Similarity=0.097 Sum_probs=70.6
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHh-hcC
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-RGD 252 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~-~g~ 252 (348)
+.+.+++|+++| +..+.+.+--.+++ ..+|.+.+|+-..+|+|+++.|-.-. ++........|+.. +.-
T Consensus 60 aA~~~aiGAs~a------GaRa~TaTSg~Gl~--lm~E~l~~aa~~~lPiVi~~~~R~~p--~~~~~~~~q~D~~~~~d~ 129 (390)
T PRK08366 60 SAMAACIGASAA------GARAFTATSAQGLA--LMHEMLHWAAGARLPIVMVDVNRAMA--PPWSVWDDQTDSLAQRDT 129 (390)
T ss_pred HHHHHHHHHHhh------CCCeEeeeCcccHH--HHhhHHHHHHhcCCCEEEEEeccCCC--CCCCCcchhhHHHHHhhc
Confidence 346678888876 34455555555554 36899999999999988776643322 22222111223222 222
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCC
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSM 298 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~ 298 (348)
|. +..-..|+.+.+.-...|.+.+.+ .-|+++-...|+.. |..
T Consensus 130 g~--i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~s-h~~ 173 (390)
T PRK08366 130 GW--MQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILS-HTY 173 (390)
T ss_pred CE--EEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccc-ccc
Confidence 22 233346888888888888888777 89999999888754 443
No 189
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=86.85 E-value=4.7 Score=43.21 Aligned_cols=112 Identities=15% Similarity=0.119 Sum_probs=62.5
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.+. +++|+|+|+. .-+++++++ +.+.+-.+.+-.+.++..++|++|++...++. +..........|+
T Consensus 404 vGIAEq~~Vg~AaGLA~~-----G~rPvv~~f--s~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~-g~dG~TH~~~~Di 475 (641)
T PLN02234 404 VGIAEQHAVTFAAGLACE-----GLKPFCTIY--SSFMQRAYDQVVHDVDLQKLPVRFAIDRAGLM-GADGPTHCGAFDV 475 (641)
T ss_pred CCcCHHHHHHHHHHHHHC-----CCeEEEEeh--HHHHHHHHHHHHHHHhhcCCCEEEEEeCCccC-CCCCccccccHHH
Confidence 4444443 3556666653 234455554 44544333344567789999999999777652 1111111112233
Q ss_pred HhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018967 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (348)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (348)
.-. -.+|++.| .=.|+.+++.+++.|... .++|++| ...|.
T Consensus 476 a~l-r~iPnl~V~~Psd~~E~~~~l~~a~~~--~~~Pv~i--r~~R~ 517 (641)
T PLN02234 476 TFM-ACLPNMIVMAPSDEAELFNMVATAAAI--DDRPSCF--RYHRG 517 (641)
T ss_pred HHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCCEEE--Eeecc
Confidence 221 14666554 345788888888887752 3689987 44443
No 190
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=86.75 E-value=5.4 Score=41.92 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~gi 254 (348)
+|.|.|.. .+.-.++++..|=|.+| ..-++..|-..+.|+|+|+-.-.. .+... .....|... +.+--
T Consensus 54 ~Adgyar~---tg~~gv~~~t~GPG~~N---~~~gla~A~~~~~Pvl~I~g~~~~~~~~~~---~~Q~~d~~~l~~~vtk 124 (579)
T TIGR03457 54 MADGFARV---TGRMSMVIGQNGPGVTN---CVTAIAAAYWAHTPVVIVTPEAGTKTIGLG---GFQEADQLPMFQEFTK 124 (579)
T ss_pred HHHHHHHH---hCCCEEEEECCCchHHH---HHHHHHHHhhcCCCEEEEeCCCccccCCCC---CCcccchhhhhhccee
Confidence 45555543 34456677777999987 234577788889999988732111 11110 000111111 11111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
...+| .++..+.+.+.+|+..+.. +||++|++-
T Consensus 125 ~~~~v--~~~~~~~~~i~~A~~~A~~~~GPV~l~iP 158 (579)
T TIGR03457 125 YQGHV--RHPSRMAEVLNRCFERAWREMGPAQLNIP 158 (579)
T ss_pred EEEec--CCHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 12345 4688888888888887777 799999985
No 191
>PRK12474 hypothetical protein; Provisional
Probab=86.64 E-value=5.4 Score=41.34 Aligned_cols=102 Identities=19% Similarity=0.061 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~gi 254 (348)
+|-|.|.+ .+.-.++++..|=|++|- .-++..|...+.|+|+|+-..... .... .....|.... ..--
T Consensus 58 mAdgYaR~---tg~~gv~~~t~GpG~~N~---~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~---~~q~~d~~~~~~~vtk 128 (518)
T PRK12474 58 AADGYGRI---AGKPAVTLLHLGPGLANG---LANLHNARRAASPIVNIVGDHAVEHLQYD---APLTSDIDGFARPVSR 128 (518)
T ss_pred HHHHHHHH---hCCCEEEEEccchhHhHh---HHHHHHHhhcCCCEEEEeccCchhhcCCC---CccccCHHHhhhcccc
Confidence 45555543 345567778889998872 344667788899999998543321 1110 0001122221 1111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
...+| .+++++.+++++|+..+.+ .||++|++-.
T Consensus 129 ~~~~v--~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~ 164 (518)
T PRK12474 129 WVHRS--ASAGAVDSDVARAVQAAQSAPGGIATLIMPA 164 (518)
T ss_pred eeeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEech
Confidence 12344 4788888899999877766 5899999864
No 192
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=86.59 E-value=5.4 Score=41.80 Aligned_cols=102 Identities=23% Similarity=0.197 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~g 253 (348)
-+|.|.|.+. +.-.++++..|=|.+|- .-++.-|...+.|+|++.-.-... .... .....|.... .+-
T Consensus 65 ~~Adgyar~t---g~~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~---~~q~~d~~~~~~~~t 135 (564)
T PRK08155 65 FIAQGMARTT---GKPAVCMACSGPGATNL---VTAIADARLDSIPLVCITGQVPASMIGTD---AFQEVDTYGISIPIT 135 (564)
T ss_pred HHHHHHHHHc---CCCeEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeccCCcccccCC---Cccccchhhhhhccc
Confidence 3466666542 34456666778998873 345777888999999997543321 1110 0001121111 111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
-...+| +++.++...+.+|+..++. .||+.|++-
T Consensus 136 k~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP 171 (564)
T PRK08155 136 KHNYLV--RDIEELPQVISDAFRIAQSGRPGPVWIDIP 171 (564)
T ss_pred eEEEEc--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 112455 3788899999999888766 599999985
No 193
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=86.55 E-value=5.1 Score=42.42 Aligned_cols=104 Identities=16% Similarity=0.097 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHhh--cCCc
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYV 254 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~--g~gi 254 (348)
-+|-|.|.. .+.-.++++..|=|.+|. .-++..|-..+.|+|++.-.-...... .......|.... .+--
T Consensus 63 ~mAdgyar~---tg~~gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~i~G~~~~~~~~--~~~~q~~d~~~l~~~vtk 134 (595)
T PRK09107 63 HAAEGYARS---TGKPGVVLVTSGPGATNA---VTPLQDALMDSIPLVCITGQVPTHLIG--SDAFQECDTVGITRPCTK 134 (595)
T ss_pred HHHHHHHHH---hCCCEEEEECCCccHhHH---HHHHHHHhhcCCCEEEEEcCCChhhcC--CCCCcccchhhhhhhheE
Confidence 345555543 344567777789999873 345777788899999987544321100 001111121111 1111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
...+| ++++++.+.+.+|+..+++ .||+.|++-.
T Consensus 135 ~~~~v--~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 170 (595)
T PRK09107 135 HNWLV--KDVNDLARVIHEAFHVATSGRPGPVVVDIPK 170 (595)
T ss_pred EEEEe--CCHHHHHHHHHHHHHHhcCCCCceEEEecCC
Confidence 12455 4788999999999988887 5899998853
No 194
>PLN02470 acetolactate synthase
Probab=86.51 E-value=5.5 Score=41.98 Aligned_cols=103 Identities=25% Similarity=0.228 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~g 253 (348)
-+|.|.|.+ .++-.++++..|=|.+| ..-++..|-.-+.|+|+|.-.-... +.. ......|... +.+-
T Consensus 65 ~~Adgyar~---tg~~gv~~~t~GPG~~N---~l~gia~A~~~~~Pvl~I~G~~~~~~~~~---~~~q~~d~~~l~~~~t 135 (585)
T PLN02470 65 FAAEGYAKA---SGKVGVCIATSGPGATN---LVTGLADALLDSVPLVAITGQVPRRMIGT---DAFQETPIVEVTRSIT 135 (585)
T ss_pred HHHHHHHHH---hCCCEEEEECCCccHHH---HHHHHHHHHhcCCcEEEEecCCChhhcCC---CcCcccchhhhhhhhe
Confidence 346666654 34456777888999987 3445777888899999997543321 111 0011111111 1111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-...+| +++.++.+.+.+|+..+.+ .||+.|++-.
T Consensus 136 k~~~~v--~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~ 172 (585)
T PLN02470 136 KHNYLV--MDVEDIPRVIREAFFLASSGRPGPVLVDIPK 172 (585)
T ss_pred EEEEEc--CCHHHHHHHHHHHHHHhcCCCCCeEEEEecC
Confidence 112455 4788999999999988877 5999999863
No 195
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=86.43 E-value=7.2 Score=40.93 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCccc-ccccccccCCchHHh--hcCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAEWRAAKSPSYYK--RGDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i-~~~~~~~~~~~~~~~--~g~gi 254 (348)
+|-|.+.+ .+.-.++++..|=|.+|. .-++..|..-+.|+|+|+-.-.... ... .......|... +.+--
T Consensus 62 mAdgyar~---tg~~gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-~~~~q~~d~~~~~~~~tk 134 (569)
T PRK09259 62 AAAAAGFL---TQKPGVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSEREIVDLQ-QGDYEELDQLNAAKPFCK 134 (569)
T ss_pred HHHHHHHH---hCCCEEEEEcCCccHHHH---HHHHHHHHhcCCCEEEEEccCCccccccc-CCCccccchhhhhhhhee
Confidence 34555543 334456777779999873 3457788889999999985433211 000 00011112211 11111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
...+|+ ++.++.+.+.+|+..+.. .||+.|++-
T Consensus 135 ~s~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP 169 (569)
T PRK09259 135 AAFRVN--RAEDIGIGVARAIRTAVSGRPGGVYLDLP 169 (569)
T ss_pred eeEEcC--CHHHHHHHHHHHHHHhhhCCCCcEEEEeC
Confidence 224553 688888888888887766 689999986
No 196
>PRK08617 acetolactate synthase; Reviewed
Probab=86.23 E-value=5.7 Score=41.42 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~gi 254 (348)
+|.|.|. ..++-.++++..|=|.+|- .-++..|..-+.|+|++.-.... .+... .....|... +.+--
T Consensus 57 ~A~gyar---~tg~~gv~~vt~GpG~~N~---l~gl~~A~~~~~PvlvisG~~~~~~~~~~---~~q~~d~~~l~~~~tk 127 (552)
T PRK08617 57 MAAAIGR---LTGKPGVVLVTSGPGVSNL---ATGLVTATAEGDPVVAIGGQVKRADRLKR---THQSMDNVALFRPITK 127 (552)
T ss_pred HHHhHhh---hcCCCEEEEECCCCcHhHh---HHHHHHHhhcCCCEEEEecCCcccccCCC---Cccccchhhhhhhhcc
Confidence 3445443 3344466777779999883 34577788889999988753222 11110 000111111 11112
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
...+| ++++++.+.+.+|+..+.+ .||+.|++-.
T Consensus 128 ~~~~v--~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~ 163 (552)
T PRK08617 128 YSAEV--QDPDNLSEVLANAFRAAESGRPGAAFVSLPQ 163 (552)
T ss_pred eEEEe--CCHHHHHHHHHHHHHHHccCCCCcEEEeChh
Confidence 22455 4788888899999887766 5899999863
No 197
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=85.93 E-value=5.3 Score=41.15 Aligned_cols=107 Identities=23% Similarity=0.177 Sum_probs=60.3
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEe-CCccccchhHHHHHHHHH--------HCCCCeEEEEecCCccccccc
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALY-GDGAANQGQLFEALNIAA--------LWDLPAILVCENNHYGMGTAE 238 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~-GDGa~~~G~~~Ealn~Aa--------~~~LPvI~Vv~NN~~~i~~~~ 238 (348)
.|+-.++ +++|+|+|++ .-++++.++ .+-.. . .+.+-.|-++ .+++|++|+..|.+..-...
T Consensus 194 ~gIaEq~~vg~AaGlA~~-----G~rPiv~~~~~~f~~-r-a~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~- 265 (464)
T PRK11892 194 TPITEHGFAGIGVGAAFA-----GLKPIVEFMTFNFAM-Q-AIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAA- 265 (464)
T ss_pred cCccHHHHHHHHHHHHhC-----CCEEEEEEehHHHHH-H-HHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCC-
Confidence 3444333 4667777764 234455454 22221 1 2334456677 88999999988876532111
Q ss_pred ccccCCchHHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEE
Q 018967 239 WRAAKSPSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMD 289 (348)
Q Consensus 239 ~~~~~~~~~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~ 289 (348)
+....+. ..--.+|+++| .=.|+.+.+..++.|++ .++|++|--.
T Consensus 266 --hhs~~d~-a~~~~iPgl~V~~P~d~~d~~~ll~~ai~---~~~Pv~ile~ 311 (464)
T PRK11892 266 --QHSQDYA-AWYSHIPGLKVVAPYSAADAKGLLKAAIR---DPNPVIFLEN 311 (464)
T ss_pred --ccccCHH-HHHhhCCCCEEEEeCCHHHHHHHHHHHhh---CCCcEEEEec
Confidence 1112222 21124677654 34578888999988885 3889986433
No 198
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=85.93 E-value=6.5 Score=41.55 Aligned_cols=93 Identities=13% Similarity=0.114 Sum_probs=56.1
Q ss_pred CCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHh--hcCCcceEEEcCCCHHHHH
Q 018967 191 DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYVPGLKVDGMDALAVK 268 (348)
Q Consensus 191 ~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~--~g~gipg~~VDG~D~~av~ 268 (348)
.-.++++..|=|++|. .-++.-|...+.|+|+|+-.-........ .....|... +..--...+|. ++.++.
T Consensus 67 ~~gv~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~~~~~--~~q~~D~~~~~~~vtk~~~~v~--~~~~i~ 139 (588)
T TIGR01504 67 NIGVCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRARLHKE--DFQAVDIAAIAKPVSKMAVTVR--EAALVP 139 (588)
T ss_pred CeEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCC--cccccCHHHHhhhhceEEEEcC--CHHHHH
Confidence 3445666678888872 34577788889999999854433211100 011112211 11111124553 788899
Q ss_pred HHHHHHHHHhcc--CCCEEEEEEE
Q 018967 269 QACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 269 ~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
+.+++|+..++. .||++|++-.
T Consensus 140 ~~i~~A~~~A~~~~~GPV~l~iP~ 163 (588)
T TIGR01504 140 RVLQQAFHLMRSGRPGPVLIDLPF 163 (588)
T ss_pred HHHHHHHHHHccCCCCeEEEEeCc
Confidence 999999988776 5899999864
No 199
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=85.88 E-value=7.2 Score=41.09 Aligned_cols=103 Identities=19% Similarity=0.132 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~g 253 (348)
-+|.|.+.+ .+.-.++++..|=|.+|. .-++.-|..-+.|+|+|+-.-.. .... ......|... +..-
T Consensus 52 ~~Adgyar~---tg~~gv~~~t~GPG~~n~---l~~i~~A~~~~~Pvl~I~G~~~~~~~~~---~~~q~~d~~~l~~~~t 122 (586)
T PRK06276 52 HAADGYARA---SGKVGVCVATSGPGATNL---VTGIATAYADSSPVIALTGQVPTKLIGN---DAFQEIDALGIFMPIT 122 (586)
T ss_pred HHHHHHHHH---hCCCEEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCCccccCC---CCCccccHhhHHhhhc
Confidence 445555543 344567777779998873 44577788889999998743221 1110 0000112111 1111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-...+| +++.++...+.+|+..+.. .||+.|++-.
T Consensus 123 k~s~~v--~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~ 159 (586)
T PRK06276 123 KHNFQI--KKPEEIPEIFRAAFEIAKTGRPGPVHIDLPK 159 (586)
T ss_pred ceEEec--CCHHHHHHHHHHHHHHhcCCCCCcEEEEcCh
Confidence 222455 3688888889998888776 5899999863
No 200
>PRK05858 hypothetical protein; Provisional
Probab=85.75 E-value=6.7 Score=40.87 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc---ccccccccccCCchHHhhcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY---GMGTAEWRAAKSPSYYKRGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~---~i~~~~~~~~~~~~~~~~g~g 253 (348)
-+|-|.|.+ .+.-.++++..|=|.+|. .-++..|..-+.|+|+|.-+-.. +.+..++. ....+. +.+-
T Consensus 56 ~~AdGyar~---tg~~gv~~~t~GpG~~n~---~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~--d~~~l~-~~~t 126 (542)
T PRK05858 56 FAAEAWAKL---TRVPGVAVLTAGPGVTNG---MSAMAAAQFNQSPLVVLGGRAPALRWGMGSLQEI--DHVPFV-APVT 126 (542)
T ss_pred HHHHHHHHh---cCCCeEEEEcCCchHHHH---HHHHHHHHhcCCCEEEEeCCCCcccCCCCCCccc--chhhhh-hhhh
Confidence 345566544 344456666678888873 44577888899999988754332 11111110 001111 1111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-...+|+ +++.+.+.+.+|+..+.+ .||+.|++-.
T Consensus 127 k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 163 (542)
T PRK05858 127 KFAATAQ--SAENAGRLVDQALQAAVTPHRGPVFVDFPM 163 (542)
T ss_pred ceEEEeC--CHHHHHHHHHHHHHHHcCCCCCeEEEEcCh
Confidence 1224553 578888888888877765 6899998853
No 201
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=85.71 E-value=6.8 Score=41.26 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc---ccccccccccCCchHHhh--
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY---GMGTAEWRAAKSPSYYKR-- 250 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~---~i~~~~~~~~~~~~~~~~-- 250 (348)
.-+|-|.| +..++-.+|++..|=|++| ..-.+..|..-..|+|.+.-.=.. +....+ +.|....
T Consensus 52 a~mAdgya---r~TGkpgV~~~tsGPGatN---~~tgla~A~~d~~Pll~itGqv~~~~~g~~afQ-----e~D~~~l~~ 120 (550)
T COG0028 52 AFAADGYA---RATGKPGVCLVTSGPGATN---LLTGLADAYMDSVPLLAITGQVPTSLIGTDAFQ-----EVDQVGLFR 120 (550)
T ss_pred HHHHHHHH---HHcCCCEEEEECCCCcHHH---HHHHHHHHHhcCCCEEEEeCCccccccCcchhh-----hcchhhHhh
Confidence 33455555 3456778999999999998 344588888999999988642111 111111 1232221
Q ss_pred cCCcceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 251 GDYVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 251 g~gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
.+--....|. +++++-+.+++|...+.+ .||++|++-
T Consensus 121 p~tk~~~~v~--~~~~ip~~i~~Af~~A~sgrpGpv~i~iP 159 (550)
T COG0028 121 PITKYNFEVR--SPEDIPEVVARAFRIALSGRPGPVVVDLP 159 (550)
T ss_pred hhheeEEEeC--CHHHHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 1112224564 788999999999988877 489999884
No 202
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=85.64 E-value=3 Score=44.21 Aligned_cols=77 Identities=27% Similarity=0.345 Sum_probs=53.4
Q ss_pred HHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHh-hc-CCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEE
Q 018967 209 LFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-RG-DYVPGLKVDGMDALAVKQACKFAKEHALKNGPMIL 286 (348)
Q Consensus 209 ~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~-~g-~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lI 286 (348)
..-++.+|++.++|++||..-+.++.+.......+...++. |+ .++..++- -|..+...|.+.|+++ +++|++|
T Consensus 441 ~r~AiRlaALm~l~~~~V~THDSIgvGEDGPTHqPiEqLa~LRaiPN~~V~RP--aD~~Et~~aw~~Al~~--~~gPt~L 516 (663)
T COG0021 441 ARPAVRLAALMGLPVIYVFTHDSIGVGEDGPTHQPVEQLASLRAIPNLSVIRP--ADANETAAAWKYALER--KDGPTAL 516 (663)
T ss_pred hhHHHHHHHhcCCCeEEEEecCceecCCCCCCCCcHHHHHHhhccCCceeEec--CChHHHHHHHHHHHhc--CCCCeEE
Confidence 44579999999999999999999987654333333344544 45 34444432 2455788888888873 4999988
Q ss_pred EEE
Q 018967 287 EMD 289 (348)
Q Consensus 287 e~~ 289 (348)
-+.
T Consensus 517 ilt 519 (663)
T COG0021 517 ILT 519 (663)
T ss_pred EEe
Confidence 653
No 203
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=85.60 E-value=7.1 Score=40.81 Aligned_cols=102 Identities=18% Similarity=0.110 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~g 253 (348)
-+|.|.|.+ .++-.++++..|=|.+| ..-++..|-.-+.|+|+|+-.-... .... ...+.|.... .+-
T Consensus 60 ~~Adgyar~---tg~~gv~~~t~GpG~~N---~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~---~~q~~d~~~l~~~~t 130 (557)
T PRK08199 60 MMAEAYGKL---TGRPGICFVTRGPGATN---ASIGVHTAFQDSTPMILFVGQVARDFRERE---AFQEIDYRRMFGPMA 130 (557)
T ss_pred HHHHHHHHh---cCCCEEEEeCCCccHHH---HHHHHHHHhhcCCCEEEEecCCccccCCCC---cccccCHHHhhhhhh
Confidence 345555543 34456677777999987 3445777888899999997532221 1110 0001121110 111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
-...+| ++++++.+.+.+|+..+.+ .||+.|++-
T Consensus 131 k~~~~v--~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP 166 (557)
T PRK08199 131 KWVAEI--DDAARIPELVSRAFHVATSGRPGPVVLALP 166 (557)
T ss_pred ceeeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcC
Confidence 112445 5788888889888888766 589999885
No 204
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=85.49 E-value=8.3 Score=40.12 Aligned_cols=102 Identities=16% Similarity=0.100 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~gi 254 (348)
+|-|.|. ..++-.++++..|=|.+| ..-++..|..-+.|+|+|+-.-... ... ......|... +.+--
T Consensus 51 ~Adgyar---~tg~~gv~~~t~GpG~~n---~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~---~~~q~~d~~~~~~~~tk 121 (539)
T TIGR02418 51 MAQAVGR---ITGKPGVALVTSGPGCSN---LVTGLATANSEGDPVVAIGGQVKRADLLK---LTHQSMDNVALFRPITK 121 (539)
T ss_pred HHHHHHH---HhCCceEEEECCCCCHhH---HHHHHHHHhhcCCCEEEEeCCCccccccc---Ccccccchhhhhhccee
Confidence 4455543 334456777888999987 2345777888899999998643221 110 0011112111 11111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
...++ ++++++.+.+.+|+..+.. .||+.|++-.
T Consensus 122 ~~~~i--~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~ 157 (539)
T TIGR02418 122 YSAEV--QDPDALSEVVANAFRAAESGKPGAAFVSLPQ 157 (539)
T ss_pred eeeec--CCHHHHHHHHHHHHHHHhcCCCCCEEEEcCh
Confidence 12344 4788888888888877766 5899999864
No 205
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=85.43 E-value=8 Score=40.71 Aligned_cols=103 Identities=18% Similarity=0.128 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~gi 254 (348)
+|-|.|. ..++-.++++..|=|.+| ..-++..|-..+.|+|+|+-.-.. ..... .....|... +.+-.
T Consensus 53 ~Adgyar---~tgk~gv~~~t~GPG~~n---~~~~i~~A~~~~~Pvl~I~G~~~~~~~~~~---~~q~id~~~~~~~vtk 123 (575)
T TIGR02720 53 AAAADAK---LTGKIGVCFGSAGPGATH---LLNGLYDAKEDHVPVLALVGQVPTTGMNMD---TFQEMNENPIYADVAV 123 (575)
T ss_pred HHHHHHH---hhCCceEEEeCCCCcHHH---HHHHHHHHhhcCCCEEEEecCCccccCCCC---Ccceechhhhhhhcce
Confidence 3445543 344556778888999887 345577788889999999865332 11111 000111111 11111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~ 291 (348)
...+| .++..+.+.+.+|+..+.+ .||+.|++-..
T Consensus 124 ~~~~v--~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 124 YNRTA--MTAESLPHVIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred EEEEe--CCHHHHHHHHHHHHHHHhhCCCCEEEEECcc
Confidence 11344 3567777777777776666 89999998643
No 206
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=85.29 E-value=7.6 Score=40.81 Aligned_cols=102 Identities=18% Similarity=0.084 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~gi 254 (348)
+|.|.|.+ .+.-.++++..|=|++|. .-++.-|-..++|+|+|+-.-.. ..... .....|... +..--
T Consensus 64 ~Adgyar~---tg~~gv~~~t~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~---~~Q~~d~~~l~~~vtk 134 (578)
T PRK06112 64 MADGYARV---SGKVAVVTAQNGPAATLL---VAPLAEALKASVPIVALVQDVNRDQTDRN---AFQELDHIALFQSCTK 134 (578)
T ss_pred HHHHHHHH---hCCCEEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCC---CccccChhhhhccccc
Confidence 45566544 345566777778888873 44577788889999999844221 11100 000111111 11111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
...+| .+++.+.+.+..|+..++. .||+.|++-.
T Consensus 135 ~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 170 (578)
T PRK06112 135 WVRRV--TVAERIDDYVDQAFTAATSGRPGPVVLLLPA 170 (578)
T ss_pred eEEEe--CCHHHHHHHHHHHHHHHhhCCCCcEEEEcCH
Confidence 12345 3688888888888877766 5899999863
No 207
>PLN02790 transketolase
Probab=85.28 E-value=7.3 Score=41.89 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=65.6
Q ss_pred Cccccch-hHHHHHHHHHHHhCC-CCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCch
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSK-DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~-~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~ 246 (348)
.|+-.+. +.+|.|+|+. + .-.++++.+. .+.. ...+++.+++..+|||+||....+.+.+.......+-.|
T Consensus 397 ~GIaEq~mv~~AaGlA~~----G~G~~P~~~tf~--~F~~-~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~THq~ied 469 (654)
T PLN02790 397 FGVREHGMGAICNGIALH----SSGLIPYCATFF--VFTD-YMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEH 469 (654)
T ss_pred eeechHHHHHHHHHHHhc----CCCcEEEEEecH--HHHH-HHHHHHHHHHhcCCCeEEEEECCceeecCCCCCcccHHH
Confidence 4555444 3566777652 2 1234444331 2232 467788999999999999998888765432222222234
Q ss_pred HHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 247 ~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
+.-. -.+|.+.| .=-|..++..+++.|++. .++|+.|-+
T Consensus 470 la~l-R~iPnl~V~~PaD~~E~~~~l~~al~~--~~gP~~irl 509 (654)
T PLN02790 470 LASL-RAMPNILMLRPADGNETAGAYKVAVTN--RKRPTVLAL 509 (654)
T ss_pred HHHh-cCCCCcEEEeCCCHHHHHHHHHHHHHc--CCCCEEEEe
Confidence 3321 13666544 335788889999888862 279988754
No 208
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=85.01 E-value=8.3 Score=40.44 Aligned_cols=103 Identities=18% Similarity=0.202 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~g 253 (348)
-+|-|.|.+ .+.-.++++..|=|.+|. .-++..|-..+.|+|+|.-.-... .... .....|... +.+-
T Consensus 56 ~mAdgyar~---tg~~gv~~~t~GpG~~N~---l~~i~~A~~~~~Pvlvi~G~~~~~~~~~~---~~q~~d~~~l~~~vt 126 (574)
T PRK06882 56 HMADGYARS---TGKVGCVLVTSGPGATNA---ITGIATAYTDSVPLVILSGQVPSNLIGTD---AFQECDMLGISRPVV 126 (574)
T ss_pred HHHHHHHHh---hCCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCC---cccccchhhhhhccc
Confidence 345555543 344556777779988873 345777778899999997543321 1110 000111111 1111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
....+| +++.++...+.+|+..+.. .||+.|++-.
T Consensus 127 k~s~~v--~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (574)
T PRK06882 127 KHSFIV--KNAEDIPSTIKKAFYIASTGRPGPVVIDIPK 163 (574)
T ss_pred ceEEEe--CCHHHHHHHHHHHHHHHhcCCCCCEEEecCH
Confidence 223456 3788888888888877766 5999999864
No 209
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=84.95 E-value=7.7 Score=41.00 Aligned_cols=108 Identities=17% Similarity=0.216 Sum_probs=62.8
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHH-HHHHHHHCCCCeEEEEecCCcccccccccccCCch
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFE-ALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPS 246 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~E-aln~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~ 246 (348)
.|+-.++ +++|.|+|+. + -++++.. =..|.+ ..+| ..+.++..++|+++++...++. +..........|
T Consensus 326 ~GIaE~~mvg~A~GlA~~----G-~~p~~~~--f~~F~~-ra~dQi~~~~a~~~~pv~~v~~~~G~~-g~dG~tH~~~ed 396 (580)
T PRK05444 326 VGIAEQHAVTFAAGLATE----G-LKPVVAI--YSTFLQ-RAYDQVIHDVALQNLPVTFAIDRAGLV-GADGPTHQGAFD 396 (580)
T ss_pred CChHHHHHHHHHHHHHHC----C-CeeEEEe--eHHHHH-HHHHHHHHHhhhcCCCEEEEEeCCCcC-CCCCccccccHH
Confidence 4544444 3567777762 2 3444444 345554 4455 4566889999999999866652 111111112223
Q ss_pred HHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 247 ~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
+.-. -.+|++.| .-.|+.++..+++.|++. .++|++|-.
T Consensus 397 ia~l-r~iP~l~V~~Psd~~e~~~~l~~a~~~--~~~P~~ir~ 436 (580)
T PRK05444 397 LSYL-RCIPNMVIMAPSDENELRQMLYTALAY--DDGPIAIRY 436 (580)
T ss_pred HHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCcEEEEe
Confidence 3321 13666543 446889999999999862 379998755
No 210
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=84.91 E-value=7.5 Score=42.00 Aligned_cols=109 Identities=15% Similarity=0.108 Sum_probs=63.2
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.+. +.+|+|+|+. + -+++++++. .|.+=.+.+-.+.++..++||+|++...++.- ..........|+
T Consensus 403 vGIAEq~~vg~AaGLA~~----G-~kPvv~~fs--~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg-~dG~TH~~~~Di 474 (677)
T PLN02582 403 VGIAEQHAVTFAAGLACE----G-LKPFCAIYS--SFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVG-ADGPTHCGAFDV 474 (677)
T ss_pred cCcCHHHHHHHHHHHHHC----C-CeEEEEecH--HHHHHHHHHHHHHHHhcCCCEEEEEECCCccc-CCCCcccccHHH
Confidence 4554443 3556666653 2 455666653 55552333456777899999999998766521 111111122333
Q ss_pred HhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
+-. -.+|++.| .=.|..+++.+++.|+.. .++|++|-.
T Consensus 475 a~l-r~iPnl~V~~Psd~~E~~~~l~~al~~--~~gPv~IR~ 513 (677)
T PLN02582 475 TYM-ACLPNMVVMAPSDEAELFHMVATAAAI--DDRPSCFRY 513 (677)
T ss_pred HHH-hcCCCCEEEeeCCHHHHHHHHHHHHhC--CCCCEEEEE
Confidence 321 13666544 345788889999888862 269998854
No 211
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=84.47 E-value=8.3 Score=40.48 Aligned_cols=104 Identities=15% Similarity=0.178 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcC
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGD 252 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~ 252 (348)
.-+|-|.|.. .+.-.++++..|=|.+|. .-++..|-.-+.|+|+|.-.... .+... .....|... +.+
T Consensus 61 ~~~Adgyar~---tg~~gv~~~t~GPG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~~~~~~---~~q~~d~~~~~~~i 131 (566)
T PRK07282 61 LHEAEGYAKS---TGKLGVAVVTSGPGATNA---ITGIADAMSDSVPLLVFTGQVARAGIGKD---AFQEADIVGITMPI 131 (566)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecccccccCCCC---CccccChhchhcCC
Confidence 3445555543 344567777789998872 34577777889999999855332 12111 000111111 011
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-....+|+ ++.++.+++.+|+..+++ .||+.|++-.
T Consensus 132 tk~s~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 169 (566)
T PRK07282 132 TKYNYQIR--ETADIPRIITEAVHIATTGRPGPVVIDLPK 169 (566)
T ss_pred CceeEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEeCCh
Confidence 11224553 688888888888888876 5999999854
No 212
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=84.23 E-value=6.1 Score=42.75 Aligned_cols=109 Identities=9% Similarity=0.009 Sum_probs=64.4
Q ss_pred CCccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccc-cccCCc
Q 018967 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEW-RAAKSP 245 (348)
Q Consensus 168 ~~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~-~~~~~~ 245 (348)
..|+-.++ +.+|+|+|.. .-+++++++. .|-+=.+.+-.+-++..++||+||+..-++. .... ......
T Consensus 427 DvGIAEQhaVt~AAGLA~~-----G~kPvv~iys--tFlqRAyDQI~~Dval~~lpV~~vid~aGlv--g~DG~TH~g~~ 497 (701)
T PLN02225 427 NVGMAEQHAVTFSAGLSSG-----GLKPFCIIPS--AFLQRAYDQVVHDVDRQRKAVRFVITSAGLV--GSDGPVQCGAF 497 (701)
T ss_pred ccCccHHHHHHHHHHHHHC-----CCEEEEEeeh--hHHHHHHHHHHHHHHhhcCCceEEEECCccC--CCCCccccccH
Confidence 34555444 3556677643 3467777773 6766334445555789999999998765442 1111 111222
Q ss_pred hHHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 246 SYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 246 ~~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
|++-. -.+|++.| -=.|+.+++.++++|... .++|++|-.
T Consensus 498 Dia~l-r~IPnm~V~aPsD~~El~~mL~~A~~~--~~gPv~IR~ 538 (701)
T PLN02225 498 DIAFM-SSLPNMIAMAPADEDELVNMVATAAYV--TDRPVCFRF 538 (701)
T ss_pred HHHHH-hcCCCCEEEeeCCHHHHHHHHHHHHhc--CCCCEEEEe
Confidence 33221 13666554 345788899999887742 379999754
No 213
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=84.16 E-value=7.2 Score=38.75 Aligned_cols=106 Identities=20% Similarity=0.145 Sum_probs=56.6
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEe-CCccccchhHHHHHHHHHHCC--------CCeEEEEecCCccccccc
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALY-GDGAANQGQLFEALNIAALWD--------LPAILVCENNHYGMGTAE 238 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~-GDGa~~~G~~~Ealn~Aa~~~--------LPvI~Vv~NN~~~i~~~~ 238 (348)
.|+-.++ +++|+|+|++ ..+++++++ .|=. +=.+.+-.+-++.++ +||+|++.+ +...+.
T Consensus 79 ~GIAEq~~vg~AaGlA~~-----G~~P~v~~~~~~f~--~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~g~-- 148 (356)
T PLN02683 79 TPITEAGFTGIGVGAAYA-----GLKPVVEFMTFNFS--MQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAAGV-- 148 (356)
T ss_pred CchhHHHHHHHHHHHHHC-----CCEEEEEEehhhHH--HHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCCCC--
Confidence 3443333 4667777764 224444443 3222 212333446667666 999999877 432221
Q ss_pred ccccCCchHHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 239 WRAAKSPSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 239 ~~~~~~~~~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
.......+.+-. -.+|++.| .=.|+.+++.+++.|++ .++|++|-.
T Consensus 149 G~tH~~~~~a~l-r~iPnl~V~~Pad~~e~~~~l~~a~~---~~gPv~ir~ 195 (356)
T PLN02683 149 GAQHSQCFAAWY-SSVPGLKVLAPYSSEDARGLLKAAIR---DPDPVVFLE 195 (356)
T ss_pred CCccccCHHHHH-hcCCCCEEEEeCCHHHHHHHHHHHHh---CCCcEEEEE
Confidence 111111122111 13666544 33578899999998885 389998853
No 214
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=84.06 E-value=9.1 Score=40.08 Aligned_cols=103 Identities=20% Similarity=0.171 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cC
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GD 252 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~ 252 (348)
.-+|-|.+.+ .++-.++++..|=|.+|. .-++.-|-.-+.|+|++.-.-... +.. ......|.... ..
T Consensus 58 ~~~Adgyar~---tg~~~v~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~~~~~i 128 (561)
T PRK06048 58 AHAADGYARA---TGKVGVCVATSGPGATNL---VTGIATAYMDSVPIVALTGQVPRSMIGN---DAFQEADITGITMPI 128 (561)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEeccCCccccCC---CCccccchhhhccCc
Confidence 3445565544 344567777789999873 445777888899999887432211 100 00011122111 11
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
--...+| .++.++.+.+.+|+..+++ .||+.|++-
T Consensus 129 tk~s~~v--~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP 165 (561)
T PRK06048 129 TKHNYLV--QDAKDLPRIIKEAFHIASTGRPGPVLIDLP 165 (561)
T ss_pred ceEEEEe--CCHHHHHHHHHHHHHHHhcCCCCeEEEecC
Confidence 1112345 4688888888888887766 599999985
No 215
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=83.57 E-value=13 Score=37.48 Aligned_cols=112 Identities=17% Similarity=0.108 Sum_probs=69.3
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHh-hcC
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-RGD 252 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~-~g~ 252 (348)
+.+.+++|++++ +..+.+.+--.+++ ..+|.|.+|+-.++|+++++-|-..+ .+........|+.. +..
T Consensus 61 aA~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aag~~lP~V~vv~~R~~~--~p~~i~~d~~D~~~~rd~ 130 (394)
T PRK08367 61 SAISACVGASAA------GVRTFTATASQGLA--LMHEVLFIAAGMRLPIVMAIGNRALS--APINIWNDWQDTISQRDT 130 (394)
T ss_pred HHHHHHHHHHhh------CCCeEeeeccchHH--HHhhHHHHHHHccCCEEEEECCCCCC--CCCCcCcchHHHHhcccc
Confidence 345667787776 33455544333333 36899999999999998887554332 23221111123322 333
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc---CCCEEEEEEEecCCCCCC
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK---NGPMILEMDTYRYHGHSM 298 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~---~gP~lIe~~t~R~~GHs~ 298 (348)
|. +.+-..|+.+++.-...|.+.+.+ .-|+++-...||. +|+.
T Consensus 131 g~--~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~-sH~~ 176 (394)
T PRK08367 131 GW--MQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFIL-THTV 176 (394)
T ss_pred Ce--EEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhh-cCcc
Confidence 33 223346888888888888877764 3699999999885 5653
No 216
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=83.48 E-value=10 Score=40.06 Aligned_cols=102 Identities=21% Similarity=0.214 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHh--hcCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYK--RGDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~--~g~gi 254 (348)
+|.|.|.. .+.-.++++..|=|.+|. .-++.-|..-+.|+|+|+-.-.. .+... .....|... +.+--
T Consensus 66 ~Adgyar~---tg~~gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~---~~q~~d~~~~~~~~tk 136 (585)
T CHL00099 66 AADGYARS---TGKVGVCFATSGPGATNL---VTGIATAQMDSVPLLVITGQVGRAFIGTD---AFQEVDIFGITLPIVK 136 (585)
T ss_pred HHHHHHHh---cCCcEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCCC---CccccchhhhhcCcee
Confidence 44555433 344566777779998873 34577788889999988753221 11110 001112211 11112
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
...+|+ +++.+.+.+++|+..+++ .||+.|++-.
T Consensus 137 ~~~~v~--~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~ 172 (585)
T CHL00099 137 HSYVVR--DARDISRIVAEAFYIAKHGRPGPVLIDIPK 172 (585)
T ss_pred EEEEeC--CHHHHHHHHHHHHHHHccCCCCeEEEecCh
Confidence 224564 788899999999888776 5899999753
No 217
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=83.07 E-value=9.5 Score=40.07 Aligned_cols=104 Identities=20% Similarity=0.247 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcC
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGD 252 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~ 252 (348)
.-+|-|.|.+ .+.-.++++..|=|.+|. .-++.-|-..+.|+|++.-.-... .+. ......|... +..
T Consensus 55 ~~mAdgyar~---tg~~gv~~~t~GpG~~n~---l~gia~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~~~~~i 125 (572)
T PRK08979 55 VHMADGYARA---TGKVGVVLVTSGPGATNT---ITGIATAYMDSIPMVVLSGQVPSNLIGN---DAFQECDMIGISRPV 125 (572)
T ss_pred HHHHHHHHHH---hCCCeEEEECCCchHhHH---HHHHHHHhhcCCCEEEEecCCCccccCC---CCCcccchhHHhhhc
Confidence 3445566544 344556777779998873 345677778899999887433221 110 0011112111 111
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
--...+|+ +++++.+.+++|+..++. .||+.|++-.
T Consensus 126 tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~ 163 (572)
T PRK08979 126 VKHSFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLPK 163 (572)
T ss_pred eeEEEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecCH
Confidence 11224564 788899999999988776 5999999753
No 218
>PRK05899 transketolase; Reviewed
Probab=83.00 E-value=7.9 Score=41.27 Aligned_cols=110 Identities=25% Similarity=0.269 Sum_probs=64.8
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.++ +++|+|+|+. +.-+++++.+ ..+. .-.++.+.+++..++|+++|....+++.+........-.|+
T Consensus 372 ~GIaE~~~vg~A~GlA~~----G~~~pv~~t~--~~F~-~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tHq~~edi 444 (624)
T PRK05899 372 YGVREFAMAAIANGLALH----GGFIPFGGTF--LVFS-DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQPVEQL 444 (624)
T ss_pred eChhHHHHHHHHHHHHHc----CCCeEEEEEc--HHHH-HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCcccHHHH
Confidence 3444433 3556666643 2134444433 2444 46788899999999999999988776433211111111232
Q ss_pred HhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
.-. -.+|++.| .=.|+.++..+++.|++. .++|++|-.
T Consensus 445 a~~-r~iP~~~V~~P~d~~e~~~~l~~a~~~--~~~P~~ir~ 483 (624)
T PRK05899 445 ASL-RAIPNLTVIRPADANETAAAWKYALER--KDGPSALVL 483 (624)
T ss_pred HHH-HhCCCcEEEeCCCHHHHHHHHHHHHHc--CCCCEEEEE
Confidence 221 13666544 445888999999998862 279998866
No 219
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=82.80 E-value=8.7 Score=40.10 Aligned_cols=105 Identities=16% Similarity=0.089 Sum_probs=58.2
Q ss_pred HHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccc--cccccCCc-hHHhh--cC
Q 018967 179 GCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTA--EWRAAKSP-SYYKR--GD 252 (348)
Q Consensus 179 A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~--~~~~~~~~-~~~~~--g~ 252 (348)
|-|.|.+ .+.-.++++..|=|.+|. .-++..|...+.|+|+++-+.... .... .+.+.... +.... ..
T Consensus 54 Adgyar~---tg~~gv~~~t~GpG~~n~---~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 127 (535)
T TIGR03394 54 ADAAARY---RGTLGVAAVTYGAGAFNM---VNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEV 127 (535)
T ss_pred HhHHHHh---hCCceEEEEecchHHHhh---hhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhh
Confidence 5555543 344567778889999883 345777888899999998653321 1110 00010001 11111 11
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEe
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTY 291 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~ 291 (348)
--...+|. ++..+.+++.+|+..+.. .||++|++-..
T Consensus 128 tk~~~~v~--~~~~~~~~~~~A~~~a~~~~gPv~i~iP~D 165 (535)
T TIGR03394 128 TCDQAVLD--DPATAPAEIARVLGSARELSRPVYLEIPRD 165 (535)
T ss_pred eEEEEEeC--ChHHhHHHHHHHHHHHHHCCCCEEEEechh
Confidence 11123442 566666666666666555 79999998643
No 220
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=82.69 E-value=6.8 Score=41.15 Aligned_cols=104 Identities=15% Similarity=0.181 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCccc-cccc---c--cccCC-chHHh-
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGM-GTAE---W--RAAKS-PSYYK- 249 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i-~~~~---~--~~~~~-~~~~~- 249 (348)
+|-|.|.. .++-.++++..|=|.+| ..-++..|..-+.|+|+|+-+-.... .... . ..+.. .|...
T Consensus 65 ~Adgyar~---tgk~gv~~~t~GPG~~N---~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~ 138 (569)
T PRK08327 65 MAHGYALV---TGKPQAVMVHVDVGTAN---ALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGL 138 (569)
T ss_pred HHHHHHHh---hCCCeEEEEecCHHHHH---HHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHH
Confidence 45555543 34446677778999887 34567788888999999986543221 1100 0 00111 12111
Q ss_pred -hcCCcceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 250 -RGDYVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 250 -~g~gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
+..--...+|+ +++.+..++.+|+..+++ .||++|++-
T Consensus 139 ~~~vtk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~i~iP 179 (569)
T PRK08327 139 VREYVKWDYEIR--RGDQIGEVVARAIQIAMSEPKGPVYLTLP 179 (569)
T ss_pred HhhhhhhhcccC--CHHHHHHHHHHHHHHHhcCCCCCEEEECc
Confidence 11111113453 688999999999988876 699999986
No 221
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=82.56 E-value=11 Score=36.47 Aligned_cols=109 Identities=18% Similarity=0.266 Sum_probs=67.1
Q ss_pred CCccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHH-HHCCCCeEEEEecCCcccccccccccCCc
Q 018967 168 GHGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIA-ALWDLPAILVCENNHYGMGTAEWRAAKSP 245 (348)
Q Consensus 168 ~~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~A-a~~~LPvI~Vv~NN~~~i~~~~~~~~~~~ 245 (348)
+.|+..+. ++.|+|+|++- ..+.++-+ +.|..+-.||=+.++ +..+|||-+|+.+-++..+........-.
T Consensus 53 NvGIaEQ~mvg~AAGLA~~G-----k~Pfv~tf--a~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~E 125 (312)
T COG3958 53 NVGIAEQDMVGTAAGLALAG-----KKPFVSTF--AAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALE 125 (312)
T ss_pred ecchHHHHHHHHHHHHHhcC-----CCceeech--HHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHH
Confidence 45666655 47788888763 23444443 577777788877666 46689999999998875433222222223
Q ss_pred hHHh-hcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 246 SYYK-RGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 246 ~~~~-~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
|++= |+ +|-..| .-.|...+++++..+.++ +||+.+-+
T Consensus 126 DiaimR~--lpn~~V~~P~D~v~~~~i~~~~~~~---~GP~Y~Rl 165 (312)
T COG3958 126 DIAIMRG--LPNMTVIAPADAVETRAILDQIADY---KGPVYMRL 165 (312)
T ss_pred HHHHHhc--CCCceEEccCcHHHHHHHHHHHHhc---CCCEEEEe
Confidence 4432 33 444332 445676777777776665 99988644
No 222
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=82.46 E-value=12 Score=39.31 Aligned_cols=103 Identities=21% Similarity=0.161 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~g 253 (348)
-+|-|.|.. .+.-.++++..|=|.+|. .-++.-|-..+.|+|++.-.=... ... ......|... +.+-
T Consensus 55 ~~Adgyar~---tg~~gv~~~t~GpG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~~~~~~t 125 (563)
T PRK08527 55 HAADGYARA---SGKVGVAIVTSGPGFTNA---VTGLATAYMDSIPLVLISGQVPNSLIGT---DAFQEIDAVGISRPCV 125 (563)
T ss_pred HHHHHHHhh---hCCCEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC---CCCcccchhhhhhccc
Confidence 345555433 344567777779999872 345777788899999887422110 000 0000111111 1111
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
-...+| ++++++.+++++|+..+++ .||+.|++-.
T Consensus 126 k~s~~v--~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~ 162 (563)
T PRK08527 126 KHNYLV--KSIEELPRILKEAFYIARSGRPGPVHIDIPK 162 (563)
T ss_pred ceEEEc--CCHHHHHHHHHHHHHHHhcCCCCcEEEEcCH
Confidence 112345 5799999999999988876 5899999863
No 223
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=81.62 E-value=9.9 Score=40.19 Aligned_cols=102 Identities=15% Similarity=0.101 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHh--hcCC-
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYK--RGDY- 253 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~--~g~g- 253 (348)
+|-|.|.+ .+.-.++++..|=|++|. .-++.-|-.-+.|+|+|+-.=... +.. ......|... +..-
T Consensus 57 ~Adgyar~---tg~~gv~~~t~GPG~~n~---~~gi~~A~~d~vPvl~I~G~~~~~~~~~---~~~q~~d~~~l~~~vt~ 127 (597)
T PRK08273 57 MAVAHAKF---TGEVGVCLATSGPGAIHL---LNGLYDAKLDHVPVVAIVGQQARAALGG---HYQQEVDLQSLFKDVAG 127 (597)
T ss_pred HHHHHHHH---hCCCEEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCchhhcCC---CCCCccCHHHHHHHHHH
Confidence 45555544 234456777779999873 345777788899999988432211 111 0011111111 0011
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (348)
-...+|+ +++.+.+.+.+|+..+.. .||+.|++-.
T Consensus 128 k~~~~v~--~~~~~~~~l~~A~~~A~~~~gPV~i~iP~ 163 (597)
T PRK08273 128 AFVQMVT--VPEQLRHLVDRAVRTALAERTVTAVILPN 163 (597)
T ss_pred HHeeEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeCc
Confidence 1124553 677888888888887777 7999998864
No 224
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=81.18 E-value=12 Score=39.76 Aligned_cols=108 Identities=11% Similarity=0.086 Sum_probs=63.0
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchH
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
.|+-.++ +++|+|+|+. + -+++++.+.+ +-+-.+.+-.+-++..++||+|++...++.-..++ .....|+
T Consensus 325 ~GIaEq~~v~~AaGlA~~----G-~~Pvv~~fs~--Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~T--H~~~~Di 395 (581)
T PRK12315 325 VGIAEQESVAFASGIAAN----G-ARPVIFVNST--FLQRAYDQLSHDLAINNNPAVMIVFGGSISGNDVT--HLGIFDI 395 (581)
T ss_pred CCchHHHHHHHHHHHHHC----c-CeEEEEeeHH--HHHHHHHHHHHHHHhcCCCEEEEEECCcccCCCcc--ccccHHH
Confidence 4554443 3556676653 2 3455556654 43423333455678899999999986555321111 1122333
Q ss_pred HhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
+-. -.+|++.| ---|+.++..+++.|++. .++|++|-.
T Consensus 396 a~l-r~iPnl~V~~P~d~~e~~~~l~~a~~~--~~gP~~ir~ 434 (581)
T PRK12315 396 PMI-SNIPNLVYLAPTTKEELIAMLEWALTQ--HEHPVAIRV 434 (581)
T ss_pred HHH-hcCCCCEEEecCCHHHHHHHHHHHHhC--CCCcEEEEE
Confidence 321 24666655 446888999999988852 279998865
No 225
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=80.71 E-value=14 Score=38.83 Aligned_cols=101 Identities=11% Similarity=0.043 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~gi 254 (348)
+|.|.|.+ .+.-.++++..|=|.+|- .-++.-|..-+.|+|+|.-+-... .+.. .....+.... ..--
T Consensus 56 ~Adgyar~---tg~~gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~---~~Q~~d~~~l~~~itk 126 (574)
T PRK09124 56 AAGAEAQL---TGELAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSEIGSG---YFQETHPQELFRECSH 126 (574)
T ss_pred HHHHHHHh---hCCcEEEEECCCCCHHHH---HHHHHHHhhcCCCEEEEecCCccccCCCC---CccccChhhhccccee
Confidence 45566543 233344444568888872 234667778899999998643321 1110 0001111110 1111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
...+|+ ++..+.+.+.+|+..+.. .||+.|++-
T Consensus 127 ~~~~v~--~~~~~~~~i~~A~~~A~~~~gPV~l~iP 160 (574)
T PRK09124 127 YCELVS--NPEQLPRVLAIAMRKAILNRGVAVVVLP 160 (574)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 113453 677777777777777666 799999974
No 226
>PRK06154 hypothetical protein; Provisional
Probab=80.52 E-value=10 Score=39.89 Aligned_cols=91 Identities=23% Similarity=0.170 Sum_probs=54.5
Q ss_pred CcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhhcCCcceEEEcCCCHHHHHHH
Q 018967 192 ETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQA 270 (348)
Q Consensus 192 ~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~g~gipg~~VDG~D~~av~~a 270 (348)
-.++++..|=|.+|. .-++..|..-+.|+|+|+-..... ...... ....... +..--...+| .+++.+.+.
T Consensus 82 ~gv~~~t~GPG~~N~---~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~--~d~~~~~-~~vtk~~~~v--~~~~~~~~~ 153 (565)
T PRK06154 82 VGVFAVQYGPGAENA---FGGVAQAYGDSVPVLFLPTGYPRGSTDVAPN--FESLRNY-RHITKWCEQV--TLPDEVPEL 153 (565)
T ss_pred CEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEeCCCCcccccCCCC--cchhhhH-hhcceeEEEC--CCHHHHHHH
Confidence 345555679998873 345777888899999998543321 111000 0001111 1111112455 378888888
Q ss_pred HHHHHHHhcc--CCCEEEEEEE
Q 018967 271 CKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 271 ~~~A~~~ar~--~gP~lIe~~t 290 (348)
+.+|+..+++ .||++|++-.
T Consensus 154 i~~A~~~A~s~~~GPV~l~iP~ 175 (565)
T PRK06154 154 MRRAFTRLRNGRPGPVVLELPV 175 (565)
T ss_pred HHHHHHHHhcCCCceEEEecch
Confidence 8888887776 6999999864
No 227
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=79.82 E-value=18 Score=36.65 Aligned_cols=111 Identities=17% Similarity=0.106 Sum_probs=70.7
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHh-hcC
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-RGD 252 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~-~g~ 252 (348)
+.+.+++|++++ +..+.+.+--.+++ ...|.+.+|+-..+|+++++.+-...- +.......+|+.. +.-
T Consensus 67 ~A~~~~~GAs~a------GaRa~TaTS~~Gl~--lm~E~l~~aa~~~~P~V~~~~~R~~~~--~~~i~~d~~D~~~~r~~ 136 (407)
T PRK09622 67 AAMSACVGAAAA------GGRVATATSSQGLA--LMVEVLYQASGMRLPIVLNLVNRALAA--PLNVNGDHSDMYLSRDS 136 (407)
T ss_pred HHHHHHHHHHhh------CcCEEeecCcchHH--HHhhHHHHHHHhhCCEEEEEeccccCC--CcCCCchHHHHHHHhcC
Confidence 345667777776 33455554433443 468999999999999888877666421 2222222234433 333
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc---CCCEEEEEEEecCCCCC
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK---NGPMILEMDTYRYHGHS 297 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~---~gP~lIe~~t~R~~GHs 297 (348)
|+ +.+.-.++.++++....|.+.+.+ .-|+++-..+++ .+|.
T Consensus 137 g~--ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~-~sh~ 181 (407)
T PRK09622 137 GW--ISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFL-CSHT 181 (407)
T ss_pred Ce--EEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhh-hhCc
Confidence 44 445667899999888888877654 579999888875 3443
No 228
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=79.77 E-value=18 Score=38.16 Aligned_cols=102 Identities=18% Similarity=0.188 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHHhh--cCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYYKR--GDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~~~--g~gi 254 (348)
+|-|.|.+ .+.-.++++..|=|.+|. .-++..|...+.|+|++.-.=... .+. ......|.... -+--
T Consensus 74 ~AdgYar~---tg~~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~~~~---~~~q~~d~~~l~~~itk 144 (587)
T PRK06965 74 AADGYARA---TGKVGVALVTSGPGVTNA---VTGIATAYMDSIPMVVISGQVPTAAIGQ---DAFQECDTVGITRPIVK 144 (587)
T ss_pred HHHHHHHH---hCCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC---CCcccccHHHHhcCCcc
Confidence 45666544 234456777778888873 345667778899999887322111 110 00111121110 1111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
...+|. +++++.+.+.+|+..++. .||+.|++-.
T Consensus 145 ~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~ 180 (587)
T PRK06965 145 HNFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIPK 180 (587)
T ss_pred eeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeCh
Confidence 124553 788888888888888776 5899999854
No 229
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=79.48 E-value=15 Score=38.62 Aligned_cols=102 Identities=14% Similarity=0.063 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cc--cccccccCCchHHhhcCCc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MG--TAEWRAAKSPSYYKRGDYV 254 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~--~~~~~~~~~~~~~~~g~gi 254 (348)
+|-|.|.+ .++-.+|++..|=|.+|. .-++..|-.-+.|+|+|.-+-... +. ..++. ...++.+ .+--
T Consensus 56 mAdgyar~---tgk~~v~~v~~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Qe~--d~~~l~~-~~tk 126 (578)
T PRK06546 56 AAAAEAQL---TGKLAVCAGSCGPGNLHL---INGLYDAHRSGAPVLAIASHIPSAQIGSGFFQET--HPDRLFV-ECSG 126 (578)
T ss_pred HHHhHHHh---hCCceEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCccccCCCCcccc--Chhhhcc-ccee
Confidence 45555543 233345555668888872 234667778899999997532211 11 00000 0011111 1111
Q ss_pred ceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018967 255 PGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (348)
Q Consensus 255 pg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (348)
...+|. +++.+.+.+.+|...+.. .||+.|++-.
T Consensus 127 ~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~lP~ 161 (578)
T PRK06546 127 YCEMVS--SAEQAPRVLHSAIQHAVAGGGVSVVTLPG 161 (578)
T ss_pred eEeEeC--CHHHHHHHHHHHHHHHhcCCCCEEEEcCh
Confidence 124553 677888888888877777 8999999853
No 230
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=77.62 E-value=19 Score=37.38 Aligned_cols=104 Identities=15% Similarity=0.071 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHh--hcCCcc
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK--RGDYVP 255 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~--~g~gip 255 (348)
+|.|.|.+ .+...++++..|=|.+| ..-++..|-.-+.|+|+++-.-.+.......-+ ...|... +.+--.
T Consensus 63 ~Adgyar~---tg~~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~-~~~d~~~l~~~~tk~ 135 (530)
T PRK07092 63 MADGYAQA---TGNAAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVITAGQQARSILPFEPFL-AAVQAAELPKPYVKW 135 (530)
T ss_pred HHHHHHHH---hCCceEEEeccCchHHH---HHHHHHHHhhcCCCEEEEecCCcccccCccchh-cccCHHHhhcccccc
Confidence 46666643 34556666777888886 344577788889999988754332111000000 0011111 111111
Q ss_pred eEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEEEE
Q 018967 256 GLKVDGMDALAVKQACKFAKEHALK--NGPMILEMDT 290 (348)
Q Consensus 256 g~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~~t 290 (348)
..+| .++..+.+.+.+|+..++. .||+.|++-.
T Consensus 136 ~~~v--~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 170 (530)
T PRK07092 136 SIEP--ARAEDVPAAIARAYHIAMQPPRGPVFVSIPY 170 (530)
T ss_pred eeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEccH
Confidence 1344 5688888888888888776 5899999863
No 231
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=77.37 E-value=5.3 Score=25.26 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 018967 319 DPIERIRKLILAHDLATEKELKVFIQLVY 347 (348)
Q Consensus 319 DPi~~~~~~L~~~g~~t~~el~~i~~~~~ 347 (348)
+++..+++ |.+.|++|++|..+..+++.
T Consensus 3 ~~L~~L~~-l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 3 DRLEKLKE-LYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHH-HHHcCCCCHHHHHHHHHHHh
Confidence 45666766 57899999999999888764
No 232
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=77.32 E-value=13 Score=36.31 Aligned_cols=105 Identities=23% Similarity=0.175 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHC--------CCCeEEEEecCCcccccccccccCCchH
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW--------DLPAILVCENNHYGMGTAEWRAAKSPSY 247 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~--------~LPvI~Vv~NN~~~i~~~~~~~~~~~~~ 247 (348)
++.|+|+|++ .-+++++++.- .+.+=.+.+-.+-++.+ ++|+++...+-.++...++..+. +
T Consensus 64 vg~AaGlA~~-----G~~Piv~~~~~-~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~tH~~~----~ 133 (327)
T PRK09212 64 AGLAVGAAFA-----GLRPIVEFMTF-NFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAAQHSQC----Y 133 (327)
T ss_pred HHHHHHHHHc-----CCeeEEEeehh-hHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCcccccC----H
Confidence 4667777763 23455555531 11111122222333433 67788876654443322221111 1
Q ss_pred HhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecC
Q 018967 248 YKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILEMDTYRY 293 (348)
Q Consensus 248 ~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~ 293 (348)
.+.--.+|+++| .=.|+.+++.+++.|.+ .++|++|-..-.|+
T Consensus 134 ea~~r~iP~l~V~~P~d~~e~~~~l~~a~~---~~~Pv~i~~~~~~~ 177 (327)
T PRK09212 134 AAWYSHIPGLKVVAPYFAADCKGLLKTAIR---DPNPVIFLENEILY 177 (327)
T ss_pred HHHHhcCCCCEEEeeCCHHHHHHHHHHHHh---CCCcEEEEEchhhc
Confidence 121124676654 44688899999998885 38999884443333
No 233
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=76.92 E-value=13 Score=36.92 Aligned_cols=98 Identities=24% Similarity=0.229 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEE-eCCccccchhHHHHHHHHHH--------CCCCeEEEEecCCcccccccccccCCch
Q 018967 176 IPLGCGLAFAQKYSKDETVTFAL-YGDGAANQGQLFEALNIAAL--------WDLPAILVCENNHYGMGTAEWRAAKSPS 246 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~-~GDGa~~~G~~~Ealn~Aa~--------~~LPvI~Vv~NN~~~i~~~~~~~~~~~~ 246 (348)
+++|+|+|++ .-++++++ +.| +.+-.+.+-.|-++. +++|+|++.....++...+...+ .
T Consensus 95 vg~AaGlA~~-----G~~Pvv~~~fa~--Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~----~ 163 (355)
T PTZ00182 95 AGFAIGAAMN-----GLRPIAEFMFAD--FIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQ----S 163 (355)
T ss_pred HHHHHHHHhC-----CCEEEEEechhh--HHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccc----h
Confidence 4667777763 22344443 343 333233333444554 35777766544344432222211 1
Q ss_pred HHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018967 247 YYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (348)
Q Consensus 247 ~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (348)
+...--.+|++.| .=.|+.+++.+++.|++. ++|++|-
T Consensus 164 ~ea~lr~iPn~~V~~Psd~~e~~~~l~~a~~~---~~P~~i~ 202 (355)
T PTZ00182 164 FEAYFAHVPGLKVVAPSDPEDAKGLLKAAIRD---PNPVVFF 202 (355)
T ss_pred HHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhC---CCcEEEE
Confidence 1121124666544 335788899999988863 8999773
No 234
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=76.41 E-value=17 Score=38.60 Aligned_cols=91 Identities=14% Similarity=0.184 Sum_probs=56.9
Q ss_pred CCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccCCchHHhhcCCcceEEE-cCCCHHHHH
Q 018967 191 DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAKSPSYYKRGDYVPGLKV-DGMDALAVK 268 (348)
Q Consensus 191 ~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~~~~~~~~g~gipg~~V-DG~D~~av~ 268 (348)
.-+++++++. .|-|=.+.+-+.=.+..+|||+|+++-.+. |...++... .-|++-. --+|++.| --.|...++
T Consensus 381 G~kPvvaIYS--TFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G--~fDls~l-~~iPnmvi~aP~de~el~ 455 (627)
T COG1154 381 GMKPVVAIYS--TFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQG--LFDLSFL-RCIPNMVIMAPRDEEELR 455 (627)
T ss_pred CCCCEEEEec--HHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCcccc--HHHHHHH-hcCCCcEEecCCCHHHHH
Confidence 3456888873 344444455555567899999999997775 543332211 1122111 13777655 346888999
Q ss_pred HHHHHHHHHhccCCCEEEEE
Q 018967 269 QACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 269 ~a~~~A~~~ar~~gP~lIe~ 288 (348)
+.+.+|..+ .++|+.|-.
T Consensus 456 ~ml~ta~~~--~~gP~AiRy 473 (627)
T COG1154 456 QMLYTALAQ--DDGPVAIRY 473 (627)
T ss_pred HHHHHHHhc--CCCCeEEEe
Confidence 999999875 358998754
No 235
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=75.35 E-value=10 Score=38.30 Aligned_cols=47 Identities=28% Similarity=0.332 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN 230 (348)
+|-|.|.+ .++-.++++..|=|.+| ..-++..|-.-+.|+|+|+-.-
T Consensus 53 mAdgyar~---tg~~gv~~~t~GpG~~N---~l~gl~~A~~~~~Pvl~i~g~~ 99 (432)
T TIGR00173 53 FALGLAKA---SGRPVAVVCTSGTAVAN---LLPAVIEASYSGVPLIVLTADR 99 (432)
T ss_pred HHHHHHhc---cCCCEEEEECCcchHhh---hhHHHHHhcccCCcEEEEeCCC
Confidence 35555543 34556777777888887 3445777778899999997543
No 236
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=75.22 E-value=18 Score=36.97 Aligned_cols=94 Identities=24% Similarity=0.266 Sum_probs=57.8
Q ss_pred HHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc---ccccccccccCCchHHh--hc--
Q 018967 179 GCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY---GMGTAEWRAAKSPSYYK--RG-- 251 (348)
Q Consensus 179 A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~---~i~~~~~~~~~~~~~~~--~g-- 251 (348)
|-|.|.+ .++..+|++..|-|++|- ---|.-|-.-+.|++++ ..|. +|++. .+.+.|... |.
T Consensus 145 AegYaR~---sgKPGvvlvTSGPGATNv---vtp~ADAlaDg~PlVvf--tGQVptsaIGtD---AFQEadiVgisRScT 213 (675)
T KOG4166|consen 145 AEGYARS---SGKPGVVLVTSGPGATNV---VTPLADALADGVPLVVF--TGQVPTSAIGTD---AFQEADIVGISRSCT 213 (675)
T ss_pred hhhhhhh---cCCCcEEEEecCCCcccc---cchhhHHhhcCCcEEEE--ecccchhhcccc---hhccCCeeeeeeccc
Confidence 4565544 356789999999999983 23355566678886544 3333 23332 111112211 11
Q ss_pred -CCcceEEEcCCCHHHHHHHHHHHHHHhcc--CCCEEEEE
Q 018967 252 -DYVPGLKVDGMDALAVKQACKFAKEHALK--NGPMILEM 288 (348)
Q Consensus 252 -~gipg~~VDG~D~~av~~a~~~A~~~ar~--~gP~lIe~ 288 (348)
|++ -| .|++++-.-+.+|.+.+-+ .||+|+++
T Consensus 214 KwNv---mV--kdVedlPrrI~EAFeiATSGRPGPVLVDl 248 (675)
T KOG4166|consen 214 KWNV---MV--KDVEDLPRRIEEAFEIATSGRPGPVLVDL 248 (675)
T ss_pred eehe---ee--ecHHHhhHHHHHHhhhhccCCCCCeEeeC
Confidence 332 23 4788999999999988766 68999987
No 237
>PLN02573 pyruvate decarboxylase
Probab=72.36 E-value=33 Score=36.21 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccc--cccccCCchHH---h--
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTA--EWRAAKSPSYY---K-- 249 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~--~~~~~~~~~~~---~-- 249 (348)
+|-|.|.+ .+ -.++++..|=|++|- .-++..|..-+.|+|+|+-.-... ..+. ........++. .
T Consensus 69 mAdgyaR~---tg-~gv~~~t~GpG~~n~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (578)
T PLN02573 69 AADGYARA---RG-VGACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCF 141 (578)
T ss_pred HHHHHHHH---hC-CCeEEEecCccHHHH---HHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHh
Confidence 45555543 34 567888889998872 334667778899999998643331 1110 00000001111 1
Q ss_pred hcCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEE
Q 018967 250 RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDT 290 (348)
Q Consensus 250 ~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t 290 (348)
+..-....+|. ++..+.+.++.|+..+++ .||++|++-.
T Consensus 142 ~~itk~s~~v~--~~~~~~~~l~~A~~~A~~~~gPV~l~iP~ 181 (578)
T PLN02573 142 QTVTCYQAVIN--NLEDAHELIDTAISTALKESKPVYISVSC 181 (578)
T ss_pred hceEEEEEEeC--CHHHHHHHHHHHHHHHHhcCCCEEEEeeh
Confidence 11111124453 677777778888777767 7999999843
No 238
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=68.62 E-value=50 Score=32.95 Aligned_cols=109 Identities=21% Similarity=0.173 Sum_probs=67.2
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-cccccccccCCchHH-hhc
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGTAEWRAAKSPSYY-KRG 251 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~~~~~~~~~~~~~-~~g 251 (348)
+.+..++|++++- -+..-...|.|-+- .+|++-+|+-..+|+++++.+.... -+-|... ...|+. .+-
T Consensus 58 ~a~s~v~GA~~aG-----ar~~TaTSg~Gl~L---m~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~--dq~D~~~~r~ 127 (365)
T COG0674 58 GAISAVIGASYAG-----ARAFTATSGQGLLL---MAEALGLAAGTETPLVIVVAQRPLPSTGLPIKG--DQSDLMAARD 127 (365)
T ss_pred HHHHHHHHHHhhC-----cceEeecCCccHHH---HHHHHHHHHhccCCeEEEEeccCcCCCcccccc--cHHHHHHHHc
Confidence 5567788888762 34455555666554 5899999999999998888776652 2111111 111322 232
Q ss_pred CCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCC
Q 018967 252 DYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYH 294 (348)
Q Consensus 252 ~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~ 294 (348)
-|++-+... |+.+.+.-.-.|...+.+ .-|+++-..-++..
T Consensus 128 ~g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~~~ 169 (365)
T COG0674 128 TGFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGFLAS 169 (365)
T ss_pred cCceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccchhc
Confidence 255545443 666666666666666666 78999887777643
No 239
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=67.87 E-value=68 Score=27.65 Aligned_cols=107 Identities=18% Similarity=0.252 Sum_probs=58.1
Q ss_pred Cccccch-hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCC-CCeEEEEec-CCcccccccccccCCc
Q 018967 169 HGIVGAQ-IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWD-LPAILVCEN-NHYGMGTAEWRAAKSP 245 (348)
Q Consensus 169 ~g~lG~~-lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~-LPvI~Vv~N-N~~~i~~~~~~~~~~~ 245 (348)
.|+-.++ +++|.|+|+. +. .++++++.. +.. ..++.+.++..++ +|+|+.... ..++...+. .....
T Consensus 54 ~gIaE~~~vg~a~GlA~~----G~-~pi~~~~~~--f~~-~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~t--H~~~~ 123 (168)
T smart00861 54 TGIAEQAMVGFAAGLALA----GL-RPVVAIFFT--FFD-RAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPT--HHSQE 123 (168)
T ss_pred cCcCHHHHHHHHHHHHHc----CC-CcEEEeeHH--HHH-HHHHHHHHhCcccCCCEEEEecCccccCCCCcc--ccchh
Confidence 3444333 3556666654 32 556666643 222 3577788888887 555555533 333332111 11112
Q ss_pred hHHhhcCCcceEE-EcCCCHHHHHHHHHHHHHHhccCCCEEEEE
Q 018967 246 SYYKRGDYVPGLK-VDGMDALAVKQACKFAKEHALKNGPMILEM 288 (348)
Q Consensus 246 ~~~~~g~gipg~~-VDG~D~~av~~a~~~A~~~ar~~gP~lIe~ 288 (348)
+..-. -.+|++. +.=.|+.+++..++.++++ .++|++|-+
T Consensus 124 ~~~~~-~~iP~~~v~~P~~~~e~~~~l~~a~~~--~~~p~~i~~ 164 (168)
T smart00861 124 DEALL-RAIPGLKVVAPSDPAEAKGLLRAAIRR--DDGPPVIRL 164 (168)
T ss_pred HHHHH-hcCCCcEEEecCCHHHHHHHHHHHHhC--CCCCEEEEe
Confidence 33221 2466654 3567899999999999852 278977644
No 240
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=67.79 E-value=36 Score=36.12 Aligned_cols=109 Identities=18% Similarity=0.183 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHC--CCCeEEEEecCCcccccccccccCCchHHhhcC
Q 018967 175 QIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALW--DLPAILVCENNHYGMGTAEWRAAKSPSYYKRGD 252 (348)
Q Consensus 175 ~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~--~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~g~ 252 (348)
.+.+++|+++| +..+++.+--.+++ ...|.|..++.. .+|+|+++-|. -+-+.....+ .+.++.+-.
T Consensus 58 a~~~~~GAs~a------G~ra~t~ts~~Gl~--~~~e~l~~~~~~g~~~~iV~~~~~~-~gp~~~~~~q--~d~~~~~~~ 126 (595)
T TIGR03336 58 AVEVAAGAAWS------GLRAFCTMKHVGLN--VAADPLMTLAYTGVKGGLVVVVADD-PSMHSSQNEQ--DTRHYAKFA 126 (595)
T ss_pred HHHHHHHHHhc------CcceEEEccCCchh--hhHHHhhhhhhhcCcCceEEEEccC-CCCccchhhH--hHHHHHHhc
Confidence 34567777776 33344444333333 245666555533 56676666543 2221111111 122333445
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCC
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSM 298 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~ 298 (348)
++| ..+-.|+.++++...+|.+.+++ +-|++|-..+ .-+|+.
T Consensus 127 ~~~--vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~--~l~h~~ 169 (595)
T TIGR03336 127 KIP--CLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTT--RISHMR 169 (595)
T ss_pred CCe--EECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEee--eeccce
Confidence 665 34556899999999999998888 9999999876 455654
No 241
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=64.90 E-value=30 Score=33.90 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=23.4
Q ss_pred CcceEEE-cCCCHHHHHHHHHHHHHHhccCCCEEEE
Q 018967 253 YVPGLKV-DGMDALAVKQACKFAKEHALKNGPMILE 287 (348)
Q Consensus 253 gipg~~V-DG~D~~av~~a~~~A~~~ar~~gP~lIe 287 (348)
.+|+++| .=.|+.+.+..++.|++ .++|++|-
T Consensus 139 ~iPgl~V~~Psd~~d~~~~l~~a~~---~~~Pv~ir 171 (327)
T CHL00144 139 SVPGLQIVACSTPYNAKGLLKSAIR---SNNPVIFF 171 (327)
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHh---CCCcEEEE
Confidence 4777654 33578888999988875 38999874
No 242
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=58.86 E-value=36 Score=40.66 Aligned_cols=104 Identities=17% Similarity=0.090 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-c--ccccccccCCchHHhhcCC
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-M--GTAEWRAAKSPSYYKRGDY 253 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i--~~~~~~~~~~~~~~~~g~g 253 (348)
-+|.|.|.+ .++-.+++|..|=|.+| ..=++..|..-+.|+|+++-+-... . +..++. ....+.+ .+-
T Consensus 353 fmAdGyAR~---TgkpgV~i~TsGPG~tN---~l~av~eA~~d~vPlLvItgd~p~~~~~~ga~Q~i--Dq~~lf~-pvt 423 (1655)
T PLN02980 353 FHALGYARG---SLKPAVVITSSGTAVSN---LLPAVVEASQDFVPLLLLTADRPPELQDAGANQAI--NQVNHFG-SFV 423 (1655)
T ss_pred HHHHHHHHH---hCCCEEEEEeCcHHHHH---HHHHHHHHhhcCCCEEEEeCCCCHHHhcCCCCccc--chhhHHH-hhh
Confidence 356676654 35566778888988887 4566888889999999998665431 1 111110 0111111 000
Q ss_pred cceEEE-cCCCH---HHHHHHHHHHHHHhcc--CCCEEEEEE
Q 018967 254 VPGLKV-DGMDA---LAVKQACKFAKEHALK--NGPMILEMD 289 (348)
Q Consensus 254 ipg~~V-DG~D~---~av~~a~~~A~~~ar~--~gP~lIe~~ 289 (348)
-....| +..+. ..+.+++++|+..++. .||+.|++-
T Consensus 424 K~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP 465 (1655)
T PLN02980 424 RFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP 465 (1655)
T ss_pred heeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence 001223 11221 1234566666666655 599999996
No 243
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=58.45 E-value=35 Score=29.75 Aligned_cols=105 Identities=12% Similarity=0.179 Sum_probs=57.8
Q ss_pred chhHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-c--cccccccccCCchHHhh
Q 018967 174 AQIPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-G--MGTAEWRAAKSPSYYKR 250 (348)
Q Consensus 174 ~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~--i~~~~~~~~~~~~~~~~ 250 (348)
.++++++|+.+|- +...+.+---|=-|.=...++| =..+++|++.++.--++ . |-.........+++- .
T Consensus 53 eg~GIcAGa~lAG-----kk~ailmQnsGlGNsiNal~SL--~~ty~iPl~ml~ShRG~~~E~i~AQVpmGr~~~kiL-e 124 (172)
T COG4032 53 EGVGICAGAYLAG-----KKPAILMQNSGLGNSINALASL--YVTYKIPLLMLASHRGVLKEGIEAQVPMGRALPKIL-E 124 (172)
T ss_pred cceeeehhhhhcC-----CCcEEEEeccCcchHHHHHHHH--HHHhccchhhhhhccchhhcCCccccccchhhHHHH-h
Confidence 4456778888873 3334443322221211122223 34789998877765554 2 222111111223332 3
Q ss_pred cCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEE
Q 018967 251 GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEM 288 (348)
Q Consensus 251 g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~ 288 (348)
+.++|.+++.+ +.+-+..+..+...+-+ ..|+.+-+
T Consensus 125 ~~~lpt~t~~~--p~Ea~~li~~~~~~a~~~s~pv~vll 161 (172)
T COG4032 125 GLELPTYTIIG--PEEALPLIENAILDAFENSRPVAVLL 161 (172)
T ss_pred hcCCcccccCC--HHHHHHHHHHHHHHHHHcCCceEEEe
Confidence 56788888765 77777778888777766 88876544
No 244
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=55.38 E-value=44 Score=26.92 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=31.6
Q ss_pred CCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC
Q 018967 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (348)
Q Consensus 190 ~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~ 231 (348)
.++.++|++.-.|...+ ..|.+..|...+.|+|.|..|..
T Consensus 52 ~~~d~vi~is~sg~~~~--~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 52 DPDDLVIIISYSGETRE--LIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp STTEEEEEEESSSTTHH--HHHHHHHHHHTTSEEEEEESSTT
T ss_pred cccceeEeeeccccchh--hhhhhHHHHhcCCeEEEEeCCCC
Confidence 35678888888887764 78889999999999988876533
No 245
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=51.92 E-value=56 Score=34.04 Aligned_cols=104 Identities=12% Similarity=0.116 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcc-ccc--ccccccCC---chHHhh
Q 018967 177 PLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYG-MGT--AEWRAAKS---PSYYKR 250 (348)
Q Consensus 177 p~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~-i~~--~~~~~~~~---~~~~~~ 250 (348)
-+|-|.|.+. + ..++++..|=|++|. .-++..|-.-+.|+|+|+-.-... ... ........ .++.+.
T Consensus 53 ~mAdgyar~t---g-~gv~~~t~GPG~~n~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 125 (539)
T TIGR03393 53 YAADGYARCK---G-AAALLTTFGVGELSA---INGIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFYRM 125 (539)
T ss_pred HHhhhhhhhc---C-ceEEEEecCccHHHH---hhHHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHHHHH
Confidence 3455665443 3 356777789999873 234666778899999998533221 000 00000000 011111
Q ss_pred cCCc--ceEEEcCCC-HHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 251 GDYV--PGLKVDGMD-ALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 251 g~gi--pg~~VDG~D-~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
.-.+ ....++-.+ +..+.+|++.|+.. .||++|++-.
T Consensus 126 ~~~itk~~~~~~~~~~~~~i~~a~~~A~~~---~gPv~l~iP~ 165 (539)
T TIGR03393 126 AAEVTVAQAVLTEQNATAEIDRVITTALRE---RRPGYLMLPV 165 (539)
T ss_pred hhceEEEEEEeChhhhHHHHHHHHHHHHhc---CCCEEEEecc
Confidence 0001 011233333 56667777666642 7899999864
No 246
>TIGR01204 bioW 6-carboxyhexanoate--CoA ligase. Alternate name: pimeloyl-CoA synthase.
Probab=49.95 E-value=57 Score=30.57 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=40.7
Q ss_pred hHHHHHHHHH-HCCCC-eE--EEEecC-Cc--ccccccc-cccCCchHHhhc--CCcceEEEcC-CCHHHHHHHHHHHHH
Q 018967 208 QLFEALNIAA-LWDLP-AI--LVCENN-HY--GMGTAEW-RAAKSPSYYKRG--DYVPGLKVDG-MDALAVKQACKFAKE 276 (348)
Q Consensus 208 ~~~Ealn~Aa-~~~LP-vI--~Vv~NN-~~--~i~~~~~-~~~~~~~~~~~g--~gipg~~VDG-~D~~av~~a~~~A~~ 276 (348)
.+.||+.+|. ....| +| +|+.|| .| |.-.... ....-+.+...| .|-..+.|++ .|+.++.+-+
T Consensus 150 r~~eAlaLAsKV~~~pgvvAElC~SDDP~YtTGYVA~~~~gY~RI~~lK~~G~~~GGRvffv~~~~~l~~~i~yL----- 224 (232)
T TIGR01204 150 RTVEALALAFKVLFCPAVVAELCWSDDPDYVTGYVSGKEIGYVRITPLKEKGDELGGRVFFVSRKNELSEYIHCL----- 224 (232)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccccCCCCCCEEEEEeCCCCHHHHHHHH-----
Confidence 5899999996 55688 65 555444 35 3222222 112223344444 4666688887 4655544333
Q ss_pred HhccCCCEEEE
Q 018967 277 HALKNGPMILE 287 (348)
Q Consensus 277 ~ar~~gP~lIe 287 (348)
++.|+||+
T Consensus 225 ---E~~pvLI~ 232 (232)
T TIGR01204 225 ---EQKPILIE 232 (232)
T ss_pred ---hcCcEEeC
Confidence 37899884
No 247
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=45.84 E-value=43 Score=27.04 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=28.7
Q ss_pred cEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc
Q 018967 193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY 232 (348)
Q Consensus 193 ~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~ 232 (348)
.++|+.+.+-....|..+| +-+|...+.||+.++.+...
T Consensus 63 D~via~l~~~~~d~Gt~~E-lG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 63 DIVIANLDGFRPDSGTAFE-LGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp SEEEEEECSSS--HHHHHH-HHHHHHTTSEEEEEECCCCT
T ss_pred CEEEEECCCCCCCCcHHHH-HHHHHHCCCEEEEEEcCCcc
Confidence 4566666554577888899 88999999999999887654
No 248
>PRK01322 6-carboxyhexanoate--CoA ligase; Provisional
Probab=41.19 E-value=1e+02 Score=29.09 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=40.6
Q ss_pred hHHHHHHHHHH-CCCC-eE--EEEecC-Cc--ccccccc-cccCCchHHhhc--CCcceEEEcCC-CHHHHHHHHHHHHH
Q 018967 208 QLFEALNIAAL-WDLP-AI--LVCENN-HY--GMGTAEW-RAAKSPSYYKRG--DYVPGLKVDGM-DALAVKQACKFAKE 276 (348)
Q Consensus 208 ~~~Ealn~Aa~-~~LP-vI--~Vv~NN-~~--~i~~~~~-~~~~~~~~~~~g--~gipg~~VDG~-D~~av~~a~~~A~~ 276 (348)
.+.||+.+|.. ...| +| +|+.|| .| |.-.... ....-+.....| .|-..+.||+. |+.++. +
T Consensus 157 r~~eAlaLAsKV~~~pgivAElC~SDDP~YtTGYVA~~~~gY~RI~~mK~~G~~~GGRvffv~~~~~~~~~i-------~ 229 (242)
T PRK01322 157 RTVDALALASKVIAHPGVIAELCWSDDPDYTTGYVATKKLGYHRITNLKEEGTPYGGRIFFVDDSIDLEELI-------S 229 (242)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEecCCCCCeeEEEEeCCCCeEeCccccccCCCCCCEEEEEeCccCHHHHH-------H
Confidence 58899999974 4466 65 555444 35 3222222 112223344444 46666888875 544333 3
Q ss_pred HhccCCCEEEEEE
Q 018967 277 HALKNGPMILEMD 289 (348)
Q Consensus 277 ~ar~~gP~lIe~~ 289 (348)
+. ++.|+||+..
T Consensus 230 yL-E~~pVLI~~~ 241 (242)
T PRK01322 230 YL-ENKPVLIVYE 241 (242)
T ss_pred HH-hcCcEEEEec
Confidence 32 3889999864
No 249
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=40.95 E-value=1.1e+02 Score=31.87 Aligned_cols=46 Identities=33% Similarity=0.391 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEec
Q 018967 178 LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN 229 (348)
Q Consensus 178 ~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~N 229 (348)
+|.|.|.+ .+.-.++++..|=|.+|. .-++..|...+.|+|+|.-.
T Consensus 62 aAdgyar~---tg~~~v~~vt~GpG~~N~---l~~i~~A~~~~~Pvl~IsG~ 107 (568)
T PRK07449 62 LALGLAKA---SKRPVAVIVTSGTAVANL---YPAVIEAGLTGVPLIVLTAD 107 (568)
T ss_pred HHHHHHHh---hCCCEEEEECCccHHHhh---hHHHHHHhhcCCcEEEEECC
Confidence 45566554 334457778889999873 45677888899999999754
No 250
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=40.87 E-value=1.2e+02 Score=24.33 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=30.6
Q ss_pred CCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC
Q 018967 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (348)
Q Consensus 190 ~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~ 231 (348)
.++.++|++.--|... ++.+++..|...+.|+|.+..|..
T Consensus 46 ~~~d~vi~iS~sG~t~--~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 46 TPGDVVIAISNSGETD--ELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4667778777777665 378888899899999888887654
No 251
>PF03744 BioW: 6-carboxyhexanoate--CoA ligase; InterPro: IPR005499 This family contains the enzyme 6-carboxyhexanoate--CoA ligase 6.2.1.14 from EC. This enzyme is involved in the first step of biotin synthesis, where it converts pimelate into pimeloyl-CoA []. The enzyme requires magnesium as a cofactor and forms a homodimer [].; GO: 0009102 biotin biosynthetic process
Probab=39.63 E-value=90 Score=29.42 Aligned_cols=72 Identities=24% Similarity=0.290 Sum_probs=39.3
Q ss_pred hHHHHHHHHH-HCCCC-eE--EEEecC-Cc--cccccccc-ccCCchHHhhc--CCcceEEEcCC-CHHHHHHHHHHHHH
Q 018967 208 QLFEALNIAA-LWDLP-AI--LVCENN-HY--GMGTAEWR-AAKSPSYYKRG--DYVPGLKVDGM-DALAVKQACKFAKE 276 (348)
Q Consensus 208 ~~~Ealn~Aa-~~~LP-vI--~Vv~NN-~~--~i~~~~~~-~~~~~~~~~~g--~gipg~~VDG~-D~~av~~a~~~A~~ 276 (348)
.+.|||.+|. ....| +| +|+.|| .| |.-..... ...-+.....| .|-..+.|++. |..+ .++
T Consensus 157 r~~EAL~LAsKV~~~PgiiaELC~SDDP~YtTGYVA~~~~GY~RI~~mK~~G~~~GGRvffv~~~~d~~~-------~i~ 229 (239)
T PF03744_consen 157 RFREALALASKVAAAPGIIAELCWSDDPDYTTGYVASKKFGYHRITNMKEAGSPKGGRVFFVDGSIDIEE-------LID 229 (239)
T ss_pred hHHHHHHHHHHHhcCCcceEEEEecCCCCCceEEEEeCCcceEECccccccCCCCCCEEEEEeCCCCHHH-------HHH
Confidence 5899999996 67788 55 555444 35 32222221 11223333344 46666888865 4432 233
Q ss_pred HhccCCCEEEE
Q 018967 277 HALKNGPMILE 287 (348)
Q Consensus 277 ~ar~~gP~lIe 287 (348)
+. ++.|+||+
T Consensus 230 yL-e~~pVLv~ 239 (239)
T PF03744_consen 230 YL-ENQPVLVE 239 (239)
T ss_pred HH-hcCcEEeC
Confidence 32 38899985
No 252
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=39.48 E-value=3.5e+02 Score=25.84 Aligned_cols=81 Identities=11% Similarity=-0.020 Sum_probs=52.0
Q ss_pred EEEEEeCCcc--ccchhHHHHHHHHHHCCCCeEEEEecCC-c--cccccccccc--CCc-hHHh--hcCCcceEEEcCCC
Q 018967 194 VTFALYGDGA--ANQGQLFEALNIAALWDLPAILVCENNH-Y--GMGTAEWRAA--KSP-SYYK--RGDYVPGLKVDGMD 263 (348)
Q Consensus 194 ~vv~~~GDGa--~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~-~--~i~~~~~~~~--~~~-~~~~--~g~gipg~~VDG~D 263 (348)
.++.++.||. .++|..-+...-|...++-++||+.+|. . +|........ ... .+.. ..+.+|++.|= +|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~ 244 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD 244 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence 7999999999 8888877778888888998887776664 2 3321110000 001 1212 24677776553 58
Q ss_pred HHHHHHHHHHHH
Q 018967 264 ALAVKQACKFAK 275 (348)
Q Consensus 264 ~~av~~a~~~A~ 275 (348)
+.++-+++..++
T Consensus 245 ~~~lp~~l~~~l 256 (266)
T cd01460 245 LNQLPSVLSDAL 256 (266)
T ss_pred hhHhHHHHHHHH
Confidence 888888887776
No 253
>PRK13683 hypothetical protein; Provisional
Probab=38.22 E-value=55 Score=25.89 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=26.7
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCEEEEEEEecCCC
Q 018967 260 DGMDALAVKQACKFAKEHALKNGPMILEMDTYRYHG 295 (348)
Q Consensus 260 DG~D~~av~~a~~~A~~~ar~~gP~lIe~~t~R~~G 295 (348)
+-.|..++|+-+..|++ ++.|.+||+.|-+..+
T Consensus 21 e~edA~alYq~I~~am~---sg~P~llELtCek~~~ 53 (87)
T PRK13683 21 EAEDAEALYQQIRQAMR---SGNPRLLELTCEKVED 53 (87)
T ss_pred cHHHHHHHHHHHHHHHh---cCCCcEEEEEecCcCC
Confidence 45678889999888885 4889999999987544
No 254
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=36.94 E-value=39 Score=26.63 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=21.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHH
Q 018967 321 IERIRKLILAHDLATEKELKVFIQL 345 (348)
Q Consensus 321 i~~~~~~L~~~g~~t~~el~~i~~~ 345 (348)
+..+-.+|+++|++|+++.+.|+.+
T Consensus 16 v~~ild~L~~~gvlt~~~~e~I~~~ 40 (86)
T cd08323 16 TSYIMDHMISDGVLTLDEEEKVKSK 40 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHcC
Confidence 4458889999999999999999753
No 255
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.76 E-value=72 Score=28.30 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=32.2
Q ss_pred hHHhhcCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEE
Q 018967 246 SYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMD 289 (348)
Q Consensus 246 ~~~~~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~ 289 (348)
-+.+|++|..++-++|.+-+.+.+.++..++ + +||..|+..
T Consensus 24 ~LtARAfGA~gil~~~e~De~v~esv~dVv~---rwGG~F~v~~~ 65 (179)
T COG1303 24 ALTARAFGADGILLDGEEDEKVVESVEDVVE---RWGGPFFVKFG 65 (179)
T ss_pred hhhhHhhCCceEEEcCcccHHHHHHHHHHHH---hcCCCEEEEEc
Confidence 4566889999999999876788888877665 5 889877764
No 256
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=36.56 E-value=2.7e+02 Score=29.77 Aligned_cols=104 Identities=16% Similarity=0.179 Sum_probs=61.4
Q ss_pred CCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccc---cCC--chHHhhcCCcceEEE---cCC
Q 018967 191 DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRA---AKS--PSYYKRGDYVPGLKV---DGM 262 (348)
Q Consensus 191 ~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~---~~~--~~~~~~g~gipg~~V---DG~ 262 (348)
.|-+|+++.+|-+... +..|++..|..-+.|+|+-++-=.-- +.+.++. ..+ --..+.|-.++.+.| .|.
T Consensus 225 tDIvVLVVAadDGVmp-QT~EaIkhAk~A~VpiVvAinKiDkp-~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~ 302 (683)
T KOG1145|consen 225 TDIVVLVVAADDGVMP-QTLEAIKHAKSANVPIVVAINKIDKP-GANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE 302 (683)
T ss_pred ccEEEEEEEccCCccH-hHHHHHHHHHhcCCCEEEEEeccCCC-CCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence 5678888888888754 58999999999999987666421110 1111100 000 011122323444544 588
Q ss_pred CHHHHHHHHH---HHHHHhcc-CCC---EEEEEEEecCCCC
Q 018967 263 DALAVKQACK---FAKEHALK-NGP---MILEMDTYRYHGH 296 (348)
Q Consensus 263 D~~av~~a~~---~A~~~ar~-~gP---~lIe~~t~R~~GH 296 (348)
+...+.+|+- +-++--.. +|| ++||..+....|-
T Consensus 303 nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~ 343 (683)
T KOG1145|consen 303 NLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGP 343 (683)
T ss_pred ChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccc
Confidence 8888888763 23332223 677 5999988877764
No 257
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=35.77 E-value=42 Score=24.11 Aligned_cols=20 Identities=35% Similarity=0.659 Sum_probs=16.2
Q ss_pred HHHHHHHcCCCCHHHHHHHH
Q 018967 324 IRKLILAHDLATEKELKVFI 343 (348)
Q Consensus 324 ~~~~L~~~g~~t~~el~~i~ 343 (348)
+++-+++.|++|+++++++-
T Consensus 28 vre~v~~~g~lt~ee~d~ll 47 (55)
T PF10415_consen 28 VREVVLEEGLLTEEELDELL 47 (55)
T ss_dssp HHHHHHHTTSS-HHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHc
Confidence 67778899999999999873
No 258
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=35.20 E-value=89 Score=25.48 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=32.7
Q ss_pred CCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC
Q 018967 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (348)
Q Consensus 190 ~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~ 231 (348)
+++.++|++.--|...+ ..+++..|...+.|+|.|..|..
T Consensus 46 ~~~dl~I~iS~SG~t~~--~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 46 TEKSVVILASHSGNTKE--TVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCCcEEEEEeCCCCChH--HHHHHHHHHHcCCeEEEEECCCC
Confidence 46778899988888774 78999999999999988876543
No 259
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=34.30 E-value=75 Score=34.51 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=24.1
Q ss_pred cEEEEEeCCccccchhHHHHHHHHHHCCCCeEEE
Q 018967 193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILV 226 (348)
Q Consensus 193 ~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~V 226 (348)
.+.++=--||-... ..||+.++..|++|+||=
T Consensus 159 gVpvVPGTpgPitt--~~EA~eF~k~yG~PvI~K 190 (1176)
T KOG0369|consen 159 GVPVVPGTPGPITT--VEEALEFVKEYGLPVIIK 190 (1176)
T ss_pred CCCccCCCCCCccc--HHHHHHHHHhcCCcEEEe
Confidence 34555555666653 789999999999999864
No 260
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.96 E-value=1.2e+02 Score=26.71 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=37.6
Q ss_pred HHHHHHHHHhccCCCEEEEEEEe----cCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcC
Q 018967 269 QACKFAKEHALKNGPMILEMDTY----RYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHD 332 (348)
Q Consensus 269 ~a~~~A~~~ar~~gP~lIe~~t~----R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g 332 (348)
+-++.|+++ |+.||++||+..| ++.=-+..|-++.-.=..-++.+. ..||...+-+++.+.-
T Consensus 70 ELiENAVKf-ra~geIvieasl~s~~f~~kvsN~vd~~t~~~f~~ll~~it-~gDP~dLlieRiEanA 135 (184)
T COG5381 70 ELIENAVKF-RATGEIVIEASLYSHKFIFKVSNIVDLPTTIDFENLLKVIT-EGDPLDLLIERIEANA 135 (184)
T ss_pred HHHHhhhcc-cCCCcEEEEEEeccceEEEEecccCCCccHHHHHHHHHHHh-cCChHHHHHHHHHhhc
Confidence 455667765 3488999999864 333334455553211112334444 5899999999987653
No 261
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=32.52 E-value=49 Score=25.85 Aligned_cols=23 Identities=9% Similarity=0.130 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHH
Q 018967 322 ERIRKLILAHDLATEKELKVFIQ 344 (348)
Q Consensus 322 ~~~~~~L~~~g~~t~~el~~i~~ 344 (348)
..+..+|+++|++|.++.+.|+.
T Consensus 19 ~~v~~~L~~~~Vlt~~~~e~I~~ 41 (84)
T cd08326 19 KYLWDHLLSRGVFTPDMIEEIQA 41 (84)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHc
Confidence 44888999999999999999975
No 262
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=31.39 E-value=51 Score=26.44 Aligned_cols=25 Identities=8% Similarity=0.062 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHH
Q 018967 320 PIERIRKLILAHDLATEKELKVFIQ 344 (348)
Q Consensus 320 Pi~~~~~~L~~~g~~t~~el~~i~~ 344 (348)
+...+..+|+++|++|+++.+.|+.
T Consensus 22 ~~~~v~~~L~~~gIlT~~~~e~I~a 46 (94)
T cd08327 22 VDGLVIQYLYQEGILTESHVEEIES 46 (94)
T ss_pred chHHHHHHHHhCCCCCHHHHHHHHc
Confidence 3445778899999999999999975
No 263
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=31.29 E-value=1e+02 Score=25.01 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=31.4
Q ss_pred CCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEec
Q 018967 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN 229 (348)
Q Consensus 190 ~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~N 229 (348)
.++.++|++.-.|...+ ..+++..|...+.|+|.|..|
T Consensus 42 ~~~dl~I~iS~SG~t~e--~i~~~~~a~~~g~~iI~IT~~ 79 (119)
T cd05017 42 DRKTLVIAVSYSGNTEE--TLSAVEQAKERGAKIVAITSG 79 (119)
T ss_pred CCCCEEEEEECCCCCHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 46778888888888874 788999999999999888754
No 264
>COG3462 Predicted membrane protein [Function unknown]
Probab=30.53 E-value=89 Score=25.89 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=20.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHC
Q 018967 323 RIRKLILAHDLATEKELKVFIQLVYA 348 (348)
Q Consensus 323 ~~~~~L~~~g~~t~~el~~i~~~~~~ 348 (348)
.+|++ .++|-+||||-.++..++++
T Consensus 93 IlkER-~AkGEItEEEY~r~~~~irr 117 (117)
T COG3462 93 ILKER-YAKGEITEEEYRRIIRTIRR 117 (117)
T ss_pred HHHHH-HhcCCCCHHHHHHHHHHhcC
Confidence 35566 45799999999999998874
No 265
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=30.05 E-value=1.2e+02 Score=24.34 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=32.3
Q ss_pred CCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC
Q 018967 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230 (348)
Q Consensus 190 ~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN 230 (348)
+++.++|++.-.|...+ ..+++..|...+.|+|.|..|.
T Consensus 45 ~~~d~~I~iS~sG~t~e--~~~~~~~a~~~g~~vi~iT~~~ 83 (126)
T cd05008 45 DEDTLVIAISQSGETAD--TLAALRLAKEKGAKTVAITNVV 83 (126)
T ss_pred CCCcEEEEEeCCcCCHH--HHHHHHHHHHcCCeEEEEECCC
Confidence 46778888888888875 7889999999999999888763
No 266
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=29.40 E-value=4e+02 Score=30.94 Aligned_cols=85 Identities=13% Similarity=0.077 Sum_probs=49.0
Q ss_pred HHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHh-hcCCcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEE
Q 018967 209 LFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYK-RGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMIL 286 (348)
Q Consensus 209 ~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~-~g~gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lI 286 (348)
..|.|-.++-..+|+|+++.+-.+.- ++........|+.. |.-|. +.+-..++.+++.-...|...+.+ ..|+++
T Consensus 89 M~e~l~~~ag~~~P~Vi~va~R~~~~-~~~~i~~dh~Dv~~~R~~G~--ivl~s~svQEa~D~al~A~~lAe~~~~Pvi~ 165 (1165)
T TIGR02176 89 MIPNMYKIAGELLPCVFHVSARAIAA-HALSIFGDHQDVMAARQTGF--AMLASSSVQEVMDLALVAHLATIEARVPFMH 165 (1165)
T ss_pred HHHHHHHHHhccCCEEEEEecCCCCC-CCCccCCCchHHHHhhcCCe--EEEeCCCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 47778656666899888887644421 11111111123322 43343 333445777777766666666655 789999
Q ss_pred EEEEecCCCCC
Q 018967 287 EMDTYRYHGHS 297 (348)
Q Consensus 287 e~~t~R~~GHs 297 (348)
-...+|. +|.
T Consensus 166 ~~Dgf~t-sh~ 175 (1165)
T TIGR02176 166 FFDGFRT-SHE 175 (1165)
T ss_pred EecCcee-ccc
Confidence 8887765 454
No 267
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=28.78 E-value=4e+02 Score=29.99 Aligned_cols=117 Identities=14% Similarity=0.082 Sum_probs=69.9
Q ss_pred CCccccchhH---HHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCc-ccccccccccC
Q 018967 168 GHGIVGAQIP---LGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHY-GMGTAEWRAAK 243 (348)
Q Consensus 168 ~~g~lG~~lp---~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-~i~~~~~~~~~ 243 (348)
..||-.+++- +|+|+|++. .+..-+++ .+.=..|...-.+|-+.+++..++++.+|...-+. ..+........
T Consensus 564 e~GIAEqnmv~~~iAAGlA~a~--~G~g~iPf-~~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~eG~tHq~ 640 (889)
T TIGR03186 564 EEGISEAGAISSWIAAATSYSV--HDLPMLPF-YIYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGEGLQHQD 640 (889)
T ss_pred EechhhHHHHHHHHHHHHhhhh--cCCCceEE-EEehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCCcccccc
Confidence 4677777766 588888764 22222222 23334555557789999998899999888876555 33321111112
Q ss_pred CchHHhhcCCcceEEE-cCCCHHHHHHHHHHHHHHhcc---CCCEEEEE
Q 018967 244 SPSYYKRGDYVPGLKV-DGMDALAVKQACKFAKEHALK---NGPMILEM 288 (348)
Q Consensus 244 ~~~~~~~g~gipg~~V-DG~D~~av~~a~~~A~~~ar~---~gP~lIe~ 288 (348)
..|+.- .-.+|+..| +=-|..++..+++.+++++-. ++|+.|-+
T Consensus 641 ~eDial-~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl 688 (889)
T TIGR03186 641 GTSHLA-ASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTV 688 (889)
T ss_pred hHhHHH-HhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 223332 123565543 666888999999988875543 36777644
No 268
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=28.71 E-value=1.1e+02 Score=26.22 Aligned_cols=39 Identities=13% Similarity=0.257 Sum_probs=33.3
Q ss_pred CCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC
Q 018967 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230 (348)
Q Consensus 190 ~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN 230 (348)
+++.+++++..-|...+ ..+++..|...+.|+|.+..|.
T Consensus 78 ~~~D~~i~iS~sG~t~~--~~~~~~~a~~~g~~ii~iT~~~ 116 (154)
T TIGR00441 78 QKGDVLLGISTSGNSKN--VLKAIEAAKDKGMKTITLAGKD 116 (154)
T ss_pred CCCCEEEEEcCCCCCHH--HHHHHHHHHHCCCEEEEEeCCC
Confidence 57788999999998764 7899999999999999888653
No 269
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=28.47 E-value=4.7e+02 Score=24.05 Aligned_cols=78 Identities=21% Similarity=0.182 Sum_probs=41.8
Q ss_pred CcEEEEEeCCccccch-hHH-HHHHHHHHCCCCeEEEEecCCccccccccccc-CCchHHhhc-CCcce-EEEcCCCHHH
Q 018967 192 ETVTFALYGDGAANQG-QLF-EALNIAALWDLPAILVCENNHYGMGTAEWRAA-KSPSYYKRG-DYVPG-LKVDGMDALA 266 (348)
Q Consensus 192 ~~~vv~~~GDGa~~~G-~~~-Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~-~~~~~~~~g-~gipg-~~VDG~D~~a 266 (348)
.+.||-+.|||--|+| ... .+-..+...++ +| |+..|........ .-..|+..- .|-|+ +.+-.++..+
T Consensus 116 ~RrVIDvSGDG~~N~G~~p~~~ard~~~~~Gi-tI-----NgL~I~~~~~~~~~~L~~yy~~~VIgGpgAFV~~a~~~~d 189 (205)
T PF06707_consen 116 WRRVIDVSGDGPNNQGPRPVTSARDAAVAAGI-TI-----NGLAILDDDPFGGADLDAYYRRCVIGGPGAFVETARGFED 189 (205)
T ss_pred ceEEEEECCCCCCCCCCCccHHHHHHHHHCCe-EE-----eeeEecCCCCCccccHHHHHhhhcccCCCceEEEcCCHHH
Confidence 4789999999999999 444 33333433343 22 3433332221100 123455432 34444 4445566777
Q ss_pred HHHHHHHHH
Q 018967 267 VKQACKFAK 275 (348)
Q Consensus 267 v~~a~~~A~ 275 (348)
..+|++.=+
T Consensus 190 f~~AirrKL 198 (205)
T PF06707_consen 190 FAEAIRRKL 198 (205)
T ss_pred HHHHHHHHH
Confidence 777776543
No 270
>PLN02522 ATP citrate (pro-S)-lyase
Probab=28.37 E-value=3.3e+02 Score=29.31 Aligned_cols=87 Identities=15% Similarity=0.145 Sum_probs=51.4
Q ss_pred CCCcEEEEEeCC-ccccchhHHHHHHHHHHCCCCeEEEEecCCc-------ccccccccccCC--c-hHHh---hcCCcc
Q 018967 190 KDETVTFALYGD-GAANQGQLFEALNIAALWDLPAILVCENNHY-------GMGTAEWRAAKS--P-SYYK---RGDYVP 255 (348)
Q Consensus 190 ~~~~~vv~~~GD-Ga~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~-------~i~~~~~~~~~~--~-~~~~---~g~gip 255 (348)
.++-.+|+++|+ |...+-.+.|++.-+. .+-|||.++---.- .++......... . ..+. +-.|+
T Consensus 220 Dp~Tk~IvlygEiGg~~e~~f~ea~~~a~-~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv- 297 (608)
T PLN02522 220 IPQIKMIVVLGELGGRDEYSLVEALKQGK-VSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGA- 297 (608)
T ss_pred CCCCCEEEEEEecCchhHHHHHHHHHHhc-CCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCC-
Confidence 356679999999 8888777877766555 78898866532111 111110000011 0 1111 22576
Q ss_pred eEEEcCCCHHHHHHHHHHHHHHhccC
Q 018967 256 GLKVDGMDALAVKQACKFAKEHALKN 281 (348)
Q Consensus 256 g~~VDG~D~~av~~a~~~A~~~ar~~ 281 (348)
++++ ++.++.++++++++....+
T Consensus 298 -~vv~--s~~El~~~~~~~~~~~~~~ 320 (608)
T PLN02522 298 -IVPT--SFEALEAAIKETFEKLVEE 320 (608)
T ss_pred -eEeC--CHHHHHHHHHHHHHHHHhC
Confidence 6665 7889999998888765533
No 271
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=28.30 E-value=1.4e+02 Score=24.61 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=28.5
Q ss_pred CCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecC
Q 018967 191 DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENN 230 (348)
Q Consensus 191 ~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN 230 (348)
++.++|.+.++|...+ ...+.+..+...+.|+|.|..++
T Consensus 61 ~~~~vi~is~~g~t~~-~~~~~~~~~~~~~~~vi~it~~~ 99 (153)
T cd05009 61 EGTPVIFLAPEDRLEE-KLESLIKEVKARGAKVIVITDDG 99 (153)
T ss_pred CCCcEEEEecCChhHH-HHHHHHHHHHHcCCEEEEEecCC
Confidence 5667888888886543 25667888888889988887654
No 272
>PRK13936 phosphoheptose isomerase; Provisional
Probab=27.92 E-value=1.4e+02 Score=26.85 Aligned_cols=42 Identities=12% Similarity=0.238 Sum_probs=35.1
Q ss_pred hCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC
Q 018967 188 YSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (348)
Q Consensus 188 ~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~ 231 (348)
..+++.+++++...|...+ ..+++..|...+.|+|.|..+++
T Consensus 108 ~~~~~Dv~i~iS~sG~t~~--~~~~~~~ak~~g~~iI~IT~~~~ 149 (197)
T PRK13936 108 LGQPGDVLLAISTSGNSAN--VIQAIQAAHEREMHVVALTGRDG 149 (197)
T ss_pred hCCCCCEEEEEeCCCCcHH--HHHHHHHHHHCCCeEEEEECCCC
Confidence 3468889999999998764 78999999999999999887543
No 273
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=27.56 E-value=1.4e+02 Score=27.60 Aligned_cols=96 Identities=15% Similarity=0.128 Sum_probs=51.8
Q ss_pred cCCChhHHHHHHHHhcCCCCCEEEc-CCcchHHHHh--cCCCHHHHHHHHhCCCCCCCCCCCCCcCCCCCCCCccCCCcc
Q 018967 95 HLYDGQEAVAIGMEAGITKKDSIIT-AYRDHCTFLG--RGGTLLEVFSELMGRKDGCSHGKGGSMHFYKKDSGFYGGHGI 171 (348)
Q Consensus 95 h~~~GqEa~~vg~~~~l~~~D~i~~-~yR~~~~~l~--~G~~~~~~~ael~g~~~g~~~G~ggs~h~~~~~~~~~~~~g~ 171 (348)
++..|-+-..- -..+.+..=++++ .+|.....++ .|+|...+++..+--. ..|..+-++ .+--+
T Consensus 88 ~lT~Gi~eLv~-~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd------~~Gk~~gfd------~~~pt 154 (227)
T KOG1615|consen 88 TLTPGIRELVS-RLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFD------KDGKYLGFD------TNEPT 154 (227)
T ss_pred ccCCCHHHHHH-HHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeec------cCCcccccc------cCCcc
Confidence 45566655422 2233334334555 6898888887 7888888887743111 112122111 01111
Q ss_pred ccchhHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Q 018967 172 VGAQIPLGCGLAFAQKYSKDETVTFALYGDGAANQ 206 (348)
Q Consensus 172 lG~~lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~ 206 (348)
.-+| +=+-+++...++.+...++++|||+...
T Consensus 155 sdsg---gKa~~i~~lrk~~~~~~~~mvGDGatDl 186 (227)
T KOG1615|consen 155 SDSG---GKAEVIALLRKNYNYKTIVMVGDGATDL 186 (227)
T ss_pred ccCC---ccHHHHHHHHhCCChheeEEecCCcccc
Confidence 1111 2233445555577788999999999863
No 274
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=26.77 E-value=74 Score=25.09 Aligned_cols=24 Identities=13% Similarity=0.302 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHH
Q 018967 321 IERIRKLILAHDLATEKELKVFIQ 344 (348)
Q Consensus 321 i~~~~~~L~~~g~~t~~el~~i~~ 344 (348)
+..+-.+|+++|++|+++.+.|+.
T Consensus 22 ~~~v~~~L~~~gvlt~~~~~~I~~ 45 (90)
T cd08332 22 LDELLIHLLQKDILTDSMAESIMA 45 (90)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHc
Confidence 344788999999999999999875
No 275
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=26.32 E-value=2e+02 Score=25.70 Aligned_cols=41 Identities=12% Similarity=0.270 Sum_probs=34.5
Q ss_pred CCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC
Q 018967 189 SKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (348)
Q Consensus 189 ~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~ 231 (348)
..++.+++++...|... .+.+++..|...+.|+|.+..|+.
T Consensus 109 ~~~~Dv~I~iS~SG~t~--~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 109 GREGDVLLGISTSGNSG--NIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CCCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 46788999999999876 478999999999999998887643
No 276
>PRK13938 phosphoheptose isomerase; Provisional
Probab=26.32 E-value=1.9e+02 Score=26.14 Aligned_cols=43 Identities=12% Similarity=0.170 Sum_probs=35.6
Q ss_pred HhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC
Q 018967 187 KYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (348)
Q Consensus 187 k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~ 231 (348)
....++.++|++..-|.+.+ +-+++..|...+.|+|.+..|.+
T Consensus 109 ~~~~~~DllI~iS~SG~t~~--vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 109 GSARPGDTLFAISTSGNSMS--VLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred hcCCCCCEEEEEcCCCCCHH--HHHHHHHHHHCCCEEEEEeCCCC
Confidence 34567889999999998774 78999999999999998887644
No 277
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=25.97 E-value=43 Score=28.43 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=19.4
Q ss_pred HHHHHHHHCCCCeEEEEecCCcc
Q 018967 211 EALNIAALWDLPAILVCENNHYG 233 (348)
Q Consensus 211 Ealn~Aa~~~LPvI~Vv~NN~~~ 233 (348)
|.++.|..+++|+|||++-+++-
T Consensus 1 ei~~~a~r~~i~vi~Van~~h~~ 23 (130)
T PF02639_consen 1 EIIRVAKRYGIPVIFVANYSHRL 23 (130)
T ss_pred CHHHHHHHHCCEEEEEeCCCccC
Confidence 45788999999999999887763
No 278
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=25.85 E-value=80 Score=24.45 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHH
Q 018967 320 PIERIRKLILAHDLATEKELKVFIQL 345 (348)
Q Consensus 320 Pi~~~~~~L~~~g~~t~~el~~i~~~ 345 (348)
.+.-+-+.|+++|++|+++.+.|.++
T Consensus 16 ~v~~ilD~L~~~~Vit~e~~~~I~a~ 41 (82)
T cd08330 16 NVDPILDKLHGKKVITQEQYSEVRAE 41 (82)
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHcC
Confidence 45667788999999999999998764
No 279
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=25.63 E-value=1.1e+02 Score=32.77 Aligned_cols=53 Identities=19% Similarity=0.115 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHC--CCCeEEEEecCCcccccccccccCCchHHh-hcCCcceEEEcCCCHHHHH
Q 018967 208 QLFEALNIAALW--DLPAILVCENNHYGMGTAEWRAAKSPSYYK-RGDYVPGLKVDGMDALAVK 268 (348)
Q Consensus 208 ~~~Ealn~Aa~~--~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~-~g~gipg~~VDG~D~~av~ 268 (348)
+...+|.-+.++ ++|+++++.|..---.+ |.+.. ..||++.+.||++.|....
T Consensus 403 Dl~~aLED~~RhGqKlPL~VlvDnGsTeEDi--------pA~~~~k~Ygi~ivVVDHH~Pde~v 458 (715)
T COG1107 403 DLNFALEDAHRHGQKLPLLVLVDNGSTEEDI--------PAIKQLKAYGIDIVVVDHHYPDEAV 458 (715)
T ss_pred hHHHHHHHHHhcCCccceEEEEcCCCccccc--------HHHHHHHhcCCCEEEEcCCCCcchh
Confidence 455567777776 68888887764321111 22333 3588988999988776543
No 280
>PRK13761 hypothetical protein; Provisional
Probab=25.59 E-value=1.9e+02 Score=27.13 Aligned_cols=44 Identities=30% Similarity=0.416 Sum_probs=25.4
Q ss_pred CcceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHH
Q 018967 253 YVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGV 314 (348)
Q Consensus 253 gipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~ 314 (348)
.-|.+.||||-..-+.+ +.++-+.. +.| ||+..| |||+|-++.+
T Consensus 68 ~~PVISVNGN~AAL~p~---eiveLa~~~~A~--iEVNLF-------------~RT~eR~~~I 112 (248)
T PRK13761 68 KHPVISVNGNTAALVPE---EIVELAEALNAK--LEVNLF-------------YRTEERVEKI 112 (248)
T ss_pred CCCeEEEcchHHhhChH---HHHHHHHHhCCC--EEEEec-------------cCCHHHHHHH
Confidence 35778889875432222 22222223 555 777765 8998876654
No 281
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=25.29 E-value=1.3e+02 Score=28.29 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=34.6
Q ss_pred CCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC
Q 018967 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (348)
Q Consensus 190 ~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~ 231 (348)
.++.++|.+...|.+.+ +.+++..|...+.|+|.|+.|..
T Consensus 117 ~~~DvvI~IS~SG~T~~--vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 117 TERDVVIGIAASGRTPY--VLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCeEEEEECCCC
Confidence 57788999999999875 89999999999999998886654
No 282
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=25.02 E-value=1.6e+02 Score=26.39 Aligned_cols=52 Identities=25% Similarity=0.393 Sum_probs=30.3
Q ss_pred cceEEEcCCCHHHHHHHHHHHHHHhcc-CCCEEEEEEEecCCCCCCCCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHcC
Q 018967 254 VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERIRKLILAHD 332 (348)
Q Consensus 254 ipg~~VDG~D~~av~~a~~~A~~~ar~-~gP~lIe~~t~R~~GHs~~D~~~~YR~~~e~~~~~~~~DPi~~~~~~L~~~g 332 (348)
-|.+.|+||-..-+. ++.++-+.. +. -||+..| |||+|-++.+ .+.|.+.|
T Consensus 6 ~PVISVNGN~AAL~p---~eiveLa~~~~A--~iEVNLF-------------yRT~eR~~~I----------~~~L~~~G 57 (178)
T PF02006_consen 6 HPVISVNGNTAALVP---EEIVELAKATGA--KIEVNLF-------------YRTEERVEKI----------AELLREHG 57 (178)
T ss_pred CCEEEEcccHHHhCh---HHHHHHHHHhCC--CEEEEcc-------------cCCHHHHHHH----------HHHHHHcC
Confidence 478999997543222 222233223 44 4777664 9998876654 45566666
Q ss_pred C
Q 018967 333 L 333 (348)
Q Consensus 333 ~ 333 (348)
.
T Consensus 58 a 58 (178)
T PF02006_consen 58 A 58 (178)
T ss_pred C
Confidence 3
No 283
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=24.97 E-value=2.2e+02 Score=22.00 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=28.4
Q ss_pred EEEcCCCHHHHHHHHHHHHHHhccCCC-EEEEEEEecC
Q 018967 257 LKVDGMDALAVKQACKFAKEHALKNGP-MILEMDTYRY 293 (348)
Q Consensus 257 ~~VDG~D~~av~~a~~~A~~~ar~~gP-~lIe~~t~R~ 293 (348)
-.+.| |..+|.++++.+..++.+.++ +++++..-+.
T Consensus 41 T~l~G-~~~~Vf~~l~~~~~~a~~~~~H~v~~~T~S~~ 77 (81)
T PF07615_consen 41 TQLRG-DEEDVFDALEAAFERAAEEGPHVVMVVTISNG 77 (81)
T ss_dssp EEEEC-BHHHHHHHHHHHHHHHHCCSSSEEEEEEEEES
T ss_pred EEEEC-CHHHHHHHHHHHHHHHhccCCeEEEEEEEECC
Confidence 35677 788999999999998877666 8888876553
No 284
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=24.51 E-value=80 Score=25.16 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 018967 319 DPIERIRKLILAHDLATEKELKVFIQL 345 (348)
Q Consensus 319 DPi~~~~~~L~~~g~~t~~el~~i~~~ 345 (348)
.++..+-+.|++.|++|++|.+.|..+
T Consensus 23 ~~v~~ilD~Ll~~~Vlt~ee~e~I~~~ 49 (94)
T cd08329 23 TSVLPILDSLLSANVITEQEYDVIKQK 49 (94)
T ss_pred hhhHHHHHHHHHcCCCCHHHHHHHHcC
Confidence 445567789999999999999998753
No 285
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=24.41 E-value=4.6e+02 Score=25.52 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=19.9
Q ss_pred CCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEec
Q 018967 191 DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN 229 (348)
Q Consensus 191 ~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~N 229 (348)
+..+++++.|+=-+. -.+.|.+..+...+++ ++++.|
T Consensus 130 ~~~v~iSl~GEPlL~-p~l~eli~~~k~~Gi~-~~L~TN 166 (322)
T PRK13762 130 PKHVAISLSGEPTLY-PYLPELIEEFHKRGFT-TFLVTN 166 (322)
T ss_pred CCEEEEeCCccccch-hhHHHHHHHHHHcCCC-EEEECC
Confidence 344555555444443 3577777777666653 344443
No 286
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=24.28 E-value=1.5e+02 Score=26.84 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=34.1
Q ss_pred CCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC
Q 018967 189 SKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (348)
Q Consensus 189 ~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~ 231 (348)
..++.+++++.+.|.... +.+++..|...+.|+|.+..+.+
T Consensus 107 ~~~gDvli~iS~SG~s~~--v~~a~~~Ak~~G~~vI~IT~~~~ 147 (196)
T PRK10886 107 GHAGDVLLAISTRGNSRD--IVKAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_pred CCCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCEEEEEeCCCC
Confidence 357889999999998864 78999999999999998875433
No 287
>PF02211 NHase_beta: Nitrile hydratase beta subunit; InterPro: IPR024690 Nitrile hydratases (EC:4.2.1.84) are unusual metalloenzymes that catalyse the hydration of nitriles to their corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and they contain one iron atom per alpha beta unit []. This entry represents the structural domain of nitrile hydratase beta subunit which contains irregular array of helices in the N-terminal extension.; GO: 0018822 nitrile hydratase activity; PDB: 2DXB_H 2DD5_K 2DD4_H 2ZZD_B 2DXC_H 1AHJ_F 2ZPE_B 2ZCF_B 2D0Q_B 2CZ7_B ....
Probab=23.91 E-value=1.1e+02 Score=28.47 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=21.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHcCCCCHHHHHHHHH
Q 018967 311 ISGVRQERDPIERIRKLILAHDLATEKELKVFIQ 344 (348)
Q Consensus 311 ~~~~~~~~DPi~~~~~~L~~~g~~t~~el~~i~~ 344 (348)
++.|. .-+.+.|++.|++|++||++...
T Consensus 69 Ye~Wl------~ale~lLvekG~it~~EL~ar~~ 96 (222)
T PF02211_consen 69 YERWL------AALEKLLVEKGVITAEELDARAG 96 (222)
T ss_dssp HHHHH------HHHHHHHHHTTSS-HHHHHHHHH
T ss_pred HHHHH------HHHHHHHHHcCCCCHHHHHHHHh
Confidence 56664 45899999999999999998643
No 288
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=23.69 E-value=3.2e+02 Score=26.85 Aligned_cols=109 Identities=19% Similarity=0.185 Sum_probs=60.1
Q ss_pred CCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHH-hhcCCcceEEEc-CCCHHHHH
Q 018967 191 DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYY-KRGDYVPGLKVD-GMDALAVK 268 (348)
Q Consensus 191 ~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~-~~g~gipg~~VD-G~D~~av~ 268 (348)
++.-+++.+| +.+...+......|++.+|.++++++|-- .......++- .+=+|....-|| |.|+. +.
T Consensus 62 ~g~dTlvT~G--giQSNh~r~tAavA~~lGl~~v~ile~~~-------~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~-~~ 131 (323)
T COG2515 62 KGADTLVTYG--GIQSNHVRQTAAVAAKLGLKCVLILENIE-------ANYLLNGNLLLSKLMGAEVRAVDAGTDIG-IN 131 (323)
T ss_pred cCCcEEEEec--ccchhHHHHHHHHHHhcCCcEEEEEeccc-------cccccccchhhhhhcCceEEEecCCCChh-hc
Confidence 3444666664 56555688888899999999999999733 0000011111 112455445554 45553 44
Q ss_pred HHHHHHHHHhcc--CCCEEEEEEEecCCC-CCCCCCCCCCCCHHHHHHHH
Q 018967 269 QACKFAKEHALK--NGPMILEMDTYRYHG-HSMSDPGSTYRTRDEISGVR 315 (348)
Q Consensus 269 ~a~~~A~~~ar~--~gP~lIe~~t~R~~G-Hs~~D~~~~YR~~~e~~~~~ 315 (348)
.-++...+.+++ ++|.+|-. .| |+..-.+ -.|...|+..|.
T Consensus 132 ~~~~~~~e~~~~~g~kpyvIp~-----GG~~~~g~lG-yv~~a~Ei~~Q~ 175 (323)
T COG2515 132 ASAEELAEEVRKQGGKPYVIPE-----GGSSPLGALG-YVRLALEIAEQA 175 (323)
T ss_pred hhhHHHHHHHHhcCCCCcEecc-----CCcCcccccc-HHHHHHHHHHHH
Confidence 445555555554 67877743 33 3333332 125666776664
No 289
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=23.63 E-value=93 Score=23.14 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHH
Q 018967 319 DPIERIRKLILAHDLATEKELKVFIQ 344 (348)
Q Consensus 319 DPi~~~~~~L~~~g~~t~~el~~i~~ 344 (348)
.++..+-.+|+++|++|.+|.+.|..
T Consensus 13 ~~~~~il~~L~~~~vlt~~e~~~i~~ 38 (80)
T cd01671 13 LDVEDVLDHLLSDGVLTEEEYEKIRS 38 (80)
T ss_pred ccHHHHHHHHHHcCCCCHHHHHHHHc
Confidence 36667778999999999999998865
No 290
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=23.61 E-value=96 Score=24.03 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 018967 318 RDPIERIRKLILAHDLATEKELKVFIQL 345 (348)
Q Consensus 318 ~DPi~~~~~~L~~~g~~t~~el~~i~~~ 345 (348)
++-|.-+-+.|++.++++++|++.|..+
T Consensus 15 ~~~i~~llD~Ll~~~Vl~~~E~e~i~~~ 42 (83)
T cd08325 15 KGVINGLLDDLLEKNVLNEEEMEKIKEE 42 (83)
T ss_pred HhhHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 5677778889999999999999998764
No 291
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=23.48 E-value=2.5e+02 Score=27.08 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=40.1
Q ss_pred cchhHHHHHHHHHHHhCCCC--cEEEEEeCCccccchhHHHHHHHHHHCCC------CeEEEEecCCc
Q 018967 173 GAQIPLGCGLAFAQKYSKDE--TVTFALYGDGAANQGQLFEALNIAALWDL------PAILVCENNHY 232 (348)
Q Consensus 173 G~~lp~A~G~A~A~k~~~~~--~~vv~~~GDGa~~~G~~~Ealn~Aa~~~L------PvI~Vv~NN~~ 232 (348)
|.+.-...|+-=|.|..+.+ ...|+++|-|+.+.|...--+......++ ..|++|+-++.
T Consensus 3 GTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gl 70 (279)
T cd05312 3 GTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGL 70 (279)
T ss_pred hHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCe
Confidence 45555556666666766543 67999999999999865443333345577 36788876664
No 292
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=23.23 E-value=1e+02 Score=31.43 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEc
Q 018967 74 MRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIIT 119 (348)
Q Consensus 74 ~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~ 119 (348)
..+||+.+.+++....+ +....|.+|..+++.+.++++|.|++
T Consensus 55 ~~~Leeaia~~~g~~~v---v~t~~Gt~Al~la~~al~~pGD~V~~ 97 (431)
T cd00617 55 FYDLEDAVQDLFGFKHI---IPTHQGRGAENILFSILLKPGRTVPS 97 (431)
T ss_pred HHHHHHHHHHHHCCCeE---EEcCCHHHHHHHHHHHhCCCCCEEcc
Confidence 56888888888765432 34577999998888888999998854
No 293
>smart00114 CARD Caspase recruitment domain. Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.
Probab=23.02 E-value=72 Score=24.61 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHH
Q 018967 323 RIRKLILAHDLATEKELKVFIQ 344 (348)
Q Consensus 323 ~~~~~L~~~g~~t~~el~~i~~ 344 (348)
.+-++|+++|++|+++.+.|..
T Consensus 24 ~vld~L~~~~Vlt~~e~e~i~~ 45 (88)
T smart00114 24 GLLDYLVEKNVLTEKEIEAIKA 45 (88)
T ss_pred HHHHHHHHcCCCCHHHHHHHHc
Confidence 4778899999999999999875
No 294
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=22.82 E-value=1.5e+02 Score=26.19 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=27.9
Q ss_pred cEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEE
Q 018967 193 TVTFALYGDGAANQGQLFEALNIAALWDLPAILVC 227 (348)
Q Consensus 193 ~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv 227 (348)
+..+.++|.|+...+...+...+|...++|++.-.
T Consensus 28 KRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~ 62 (162)
T TIGR00315 28 KRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATA 62 (162)
T ss_pred CCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcC
Confidence 45788889999876777788889999999986433
No 295
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=22.37 E-value=1.2e+02 Score=22.70 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHH
Q 018967 321 IERIRKLILAHDLATEKELKVFIQ 344 (348)
Q Consensus 321 i~~~~~~L~~~g~~t~~el~~i~~ 344 (348)
+..+-.+|+++|++|++|.+.|..
T Consensus 18 ~~~ild~L~~~~vlt~~e~e~I~~ 41 (85)
T PF00619_consen 18 LDDILDHLLSRGVLTEEEYEEIRS 41 (85)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHc
Confidence 555778899999999999999865
No 296
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=22.27 E-value=4.7e+02 Score=25.69 Aligned_cols=60 Identities=18% Similarity=0.118 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhc-CCCCCEEEc
Q 018967 57 VETTPKELLSFFRQMA--------TMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAG-ITKKDSIIT 119 (348)
Q Consensus 57 ~~~s~e~l~~~y~~M~--------~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~-l~~~D~i~~ 119 (348)
+.++++++..+.+.+. ..+.||+.+.+++..... +..+.|.+|+..++... ++++|.|+.
T Consensus 10 p~~~~~e~~~~~~~l~~~~~~~g~~~~~le~~la~~~g~~~~---v~~~sgt~al~lal~al~~~~Gd~Viv 78 (379)
T PRK11658 10 PAMGDEELAAVKEVLRSGWITTGPKNQALEQAFCQLTGNQHA---IAVSSATAGMHITLMALGIGPGDEVIT 78 (379)
T ss_pred CCCCHHHHHHHHHHHHcCCccCCHhHHHHHHHHHHHhCCCeE---EEECCHHHHHHHHHHHcCCCCCCEEEE
Confidence 4455666555544331 257899998887754321 23467999998877766 789996554
No 297
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=21.48 E-value=6.6e+02 Score=23.37 Aligned_cols=108 Identities=10% Similarity=-0.003 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCccccccccc-ccCC-c---h--HH
Q 018967 176 IPLGCGLAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWR-AAKS-P---S--YY 248 (348)
Q Consensus 176 lp~A~G~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~-~~~~-~---~--~~ 248 (348)
+--.+|-.++.++.+.+--+|+....|++-- |..+|...+.|++++=..+..+.....+. .+.. . . ..
T Consensus 95 ~~~~v~~~la~~~~~~~~D~Vvtv~~~GI~l-----A~~lA~~L~~p~vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~ 169 (238)
T PRK08558 95 FLRLIAPVVAERFMGLRVDVVLTAATDGIPL-----AVAIASYFGADLVYAKKSKETGVEKFYEEYQRLASGIEVTLYLP 169 (238)
T ss_pred HHHHHHHHHHHHccCCCCCEEEEECcccHHH-----HHHHHHHHCcCEEEEEecCCCCCcceEEEeeccCCCceeEEEec
Confidence 4556788999888765433444444444432 35578889999887655544443221110 0000 0 0 00
Q ss_pred hhc--CCcceEEEcCCCHHHHHHHHHHHHHHhccCCCEEEEEEE
Q 018967 249 KRG--DYVPGLKVDGMDALAVKQACKFAKEHALKNGPMILEMDT 290 (348)
Q Consensus 249 ~~g--~gipg~~VDG~D~~av~~a~~~A~~~ar~~gP~lIe~~t 290 (348)
+.. -|-..+-|| |+.+-=..+..+.+.+++.|..++.+.+
T Consensus 170 ~~~l~~G~rVLIVD--Dvi~TG~Tl~~~~~ll~~~ga~vvgv~v 211 (238)
T PRK08558 170 ASALKKGDRVLIVD--DIIRSGETQRALLDLARQAGADVVGVFF 211 (238)
T ss_pred HHHcCCcCEEEEEe--cccccCHHHHHHHHHHHHcCCEEEEEEE
Confidence 111 234447777 6666666666666666665555555544
No 298
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=21.08 E-value=1e+02 Score=24.34 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=20.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHH
Q 018967 322 ERIRKLILAHDLATEKELKVFIQL 345 (348)
Q Consensus 322 ~~~~~~L~~~g~~t~~el~~i~~~ 345 (348)
.++-.+|.+.|++|+++.++|..+
T Consensus 19 ~~l~d~L~q~~VLt~~d~EeI~~~ 42 (86)
T cd08785 19 SRLTPYLRQCKVLDEQDEEEVLSS 42 (86)
T ss_pred HHHHHHHHhcCCCCHHHHHHHhCC
Confidence 448899999999999999998753
No 299
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=20.65 E-value=1.7e+02 Score=29.86 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhcccccccccCCChhHHHHHHHHhcCCCCCEEEcC
Q 018967 73 TMRRMEIAADSLYKAKLVRGFCHLYDGQEAVAIGMEAGITKKDSIITA 120 (348)
Q Consensus 73 ~~R~~e~~~~~l~~~g~~~gf~h~~~GqEa~~vg~~~~l~~~D~i~~~ 120 (348)
..+.||+.+..+..... . +-.+.|..|+..++.+.++++|.|+..
T Consensus 62 tv~~lE~~la~leg~~~--a-v~~~SG~aAi~~al~all~~GD~VI~~ 106 (432)
T PRK06702 62 TLAAFEQKLAELEGGVG--A-VATASGQAAIMLAVLNICSSGDHLLCS 106 (432)
T ss_pred HHHHHHHHHHHHhCCCc--E-EEECCHHHHHHHHHHHhcCCCCEEEEC
Confidence 46889999888765422 2 234789999998888889999987663
No 300
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=20.63 E-value=3.8e+02 Score=27.33 Aligned_cols=69 Identities=20% Similarity=0.116 Sum_probs=38.7
Q ss_pred CcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCCcccccccccccCCchHHhhcCCcceEEEcCCCHHHHHHHH
Q 018967 192 ETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQAC 271 (348)
Q Consensus 192 ~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~~~i~~~~~~~~~~~~~~~~g~gipg~~VDG~D~~av~~a~ 271 (348)
+.++.+..||-+.. +..+|++.++.+++++=+++++-.... ....+|...+.|+| +.++..+.+
T Consensus 127 ~~I~~ASSGnTgAs------~aaya~rag~~v~Vl~P~g~vs~~k~~---------q~~~~ga~~i~v~G-~fDda~~~v 190 (411)
T COG0498 127 KTILCASSGNTGAS------AAAYAARAGLKVFVLYPKGKVSPGKLA---------QMLTLGAHVIAVDG-NFDDAQELV 190 (411)
T ss_pred CEEEEeCCchHHHH------HHHHhccCCCeEEEEecCCCCCHHHHH---------HHHhcCCEEEEEcC-cHHHHHHHH
Confidence 45566666655422 255777888888777655444321110 01225556678887 455666666
Q ss_pred HHHHH
Q 018967 272 KFAKE 276 (348)
Q Consensus 272 ~~A~~ 276 (348)
+++.+
T Consensus 191 k~~~~ 195 (411)
T COG0498 191 KEAAN 195 (411)
T ss_pred HHHHh
Confidence 66554
No 301
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=20.58 E-value=2.5e+02 Score=24.28 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=22.9
Q ss_pred cEEEEEeCCccccchh-----H-HHHHHHHHHCCCCeEEE
Q 018967 193 TVTFALYGDGAANQGQ-----L-FEALNIAALWDLPAILV 226 (348)
Q Consensus 193 ~~vv~~~GDGa~~~G~-----~-~Ealn~Aa~~~LPvI~V 226 (348)
+.+|+++.||..+.|. . .+....+..++++++.|
T Consensus 99 ~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I 138 (178)
T cd01451 99 RPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVI 138 (178)
T ss_pred ceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEE
Confidence 5799999999987653 1 33445556667777555
No 302
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=20.49 E-value=4.2e+02 Score=21.60 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=35.6
Q ss_pred HHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEec
Q 018967 183 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCEN 229 (348)
Q Consensus 183 A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~N 229 (348)
.+...........|.+-+|..+..+.+-+.++.+..-++.-|-++.|
T Consensus 75 ~l~~~~~~~~~~~v~I~aD~~~~~~~vv~v~d~~~~aG~~~v~l~t~ 121 (122)
T TIGR02803 75 ALDALTEGDKDTTIFFRADKTVDYGDLMKVMNLLRQAGYLKIGLVGL 121 (122)
T ss_pred HHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 33333333445678899999999999999999999999987666554
No 303
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=20.45 E-value=2.1e+02 Score=24.72 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=32.4
Q ss_pred CCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEEecCC
Q 018967 190 KDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNH 231 (348)
Q Consensus 190 ~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv~NN~ 231 (348)
+++.++|++.--|...+ +.+++..|...+.|+|.|..|..
T Consensus 71 ~~~Dv~I~iS~sG~t~~--~i~~~~~ak~~g~~ii~IT~~~~ 110 (179)
T TIGR03127 71 KKGDLLIAISGSGETES--LVTVAKKAKEIGATVAAITTNPE 110 (179)
T ss_pred CCCCEEEEEeCCCCcHH--HHHHHHHHHHCCCeEEEEECCCC
Confidence 46778888888777764 78899999999999998887643
No 304
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=20.17 E-value=4.2e+02 Score=22.59 Aligned_cols=46 Identities=9% Similarity=0.116 Sum_probs=34.8
Q ss_pred HHHHHHhCCCCcEEEEEeCCccccchhHHHHHHHHHHCCCCeEEEE
Q 018967 182 LAFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVC 227 (348)
Q Consensus 182 ~A~A~k~~~~~~~vv~~~GDGa~~~G~~~Ealn~Aa~~~LPvI~Vv 227 (348)
.++....+......|.+-+|+....|.+.+.|+....-+..-|-++
T Consensus 86 ~~l~~~~~~~~~~~v~i~aD~~v~y~~vv~vm~~l~~aG~~~v~L~ 131 (137)
T COG0848 86 AALAALAKGKKNPRVVIRADKNVKYGTVVKVMDLLKEAGFKKVGLV 131 (137)
T ss_pred HHHHHHhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHcCCceEEEE
Confidence 3344333334445899999999999999999999999988866444
Done!