BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018968
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 113/217 (52%), Positives = 140/217 (64%), Gaps = 5/217 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
VP S+DWR K AVT +KDQ +CG CWAFS + AVEGI +I L+ LSEQ+LVDC T
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 196 XXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXX-XXXISNYEEVPSGDE 254
M+ AFE+I Q GI TE YPY+A GTC I +E VP DE
Sbjct: 62 NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDE 121
Query: 255 QALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLI 314
ALLKAV+ QPVS+ I A ++F+ Y EG+F G CGT+LDH V IVG+GTT DG YW +
Sbjct: 122 NALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYWTV 181
Query: 315 KNSWGDTWGDAGYMKILR----DEGLCGIGTQSSYPL 347
KNSWG WG+ GY+++ R EGLCGI ++SYP+
Sbjct: 182 KNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPI 218
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 225 bits (573), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 103/223 (46%), Positives = 142/223 (63%), Gaps = 8/223 (3%)
Query: 133 MTDVPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCS 192
++D+P S+DWR K AVT +KDQ +CG CWAFS V +VEGI I +L+ LSEQ+L+DC
Sbjct: 1 VSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD 60
Query: 193 TXXXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXX----XISNYEE 248
T M+ AFEYI N G+ TE YPY+A +GTC+ I +++
Sbjct: 61 TADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQD 120
Query: 249 VPSGDEQALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDG 308
VP+ E+ L +AV+ QPVS+ + A F Y EG+F G CGT+LDH V +VG+G EDG
Sbjct: 121 VPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVVGYGVAEDG 180
Query: 309 ANYWLIKNSWGDTWGDAGYMKILRDE----GLCGIGTQSSYPL 347
YW +KNSWG +WG+ GY+++ +D GLCGI ++SYP+
Sbjct: 181 KAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPV 223
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/314 (40%), Positives = 180/314 (57%), Gaps = 12/314 (3%)
Query: 38 THEQSVVEMHEKWMAQHGRSYKDELEKEMRFKIFKENLEYIEKANKEGNRTYKLGTNRFS 97
T + ++++ WM H + Y++ EK RF+IFK+NL YI++ NK+ N +Y LG N F+
Sbjct: 13 TSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKK-NNSYWLGLNEFA 71
Query: 98 DLTNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKKAVTPIKDQQEC 157
DL+NDEF Y G + + + ++ N + ++P ++DWR K AVTP++ Q C
Sbjct: 72 DLSNDEFNEKYVGSLIDATIEQSYDE---EFINEDIVNLPENVDWRKKGAVTPVRHQGSC 128
Query: 158 GCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXXXXXXXXXTMEKAFEYIIQNQGI 217
G CWAFSAVA VEGI KI L++LSEQ+LVDC A EY+ +N GI
Sbjct: 129 GSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYP-PYALEYVAKN-GI 186
Query: 218 ATEDEYPYQAVQGTC-SXXXXXXXXXISNYEEVPSGDEQALLKAVSMQPVSIGIAAYTTE 276
+YPY+A QGTC + S V +E LL A++ QPVS+ + +
Sbjct: 187 HLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRP 246
Query: 277 FKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKILR---- 332
F+ YK GIF G CGT++D AVT VG+G + LIKNSWG WG+ GY++I R
Sbjct: 247 FQLYKGGIFEGPCGTKVDGAVTAVGYGKSGGKGYI-LIKNSWGTAWGEKGYIRIKRAPGN 305
Query: 333 DEGLCGIGTQSSYP 346
G+CG+ S YP
Sbjct: 306 SPGVCGLYKSSYYP 319
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 218 bits (555), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 180/315 (57%), Gaps = 15/315 (4%)
Query: 38 THEQSVVEMHEKWMAQHGRSYKDELEKEMRFKIFKENLEYIEKANKEGNRTYKLGTNRFS 97
T + ++++ E WM +H + YK+ EK RF+IFK+NL+YI++ NK+ N +Y LG N F+
Sbjct: 57 TSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKK-NNSYWLGLNVFA 115
Query: 98 DLTNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKKAVTPIKDQQEC 157
D++NDEF+ YTG + ++ + N ++P +DWR K AVTP+K+Q C
Sbjct: 116 DMSNDEFKEKYTG--SIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSC 173
Query: 158 GCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXXXXXXXXXTMEKAFEYIIQNQGI 217
G WAFSAV+ +E I KI NL + SEQ+L+DC A + + Q GI
Sbjct: 174 GSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWS-ALQLVAQ-YGI 231
Query: 218 ATEDEYPYQAVQGTC-SXXXXXXXXXISNYEEVPSGDEQALLKAVSMQPVSIGIAAYTTE 276
+ YPY+ VQ C S +V +E ALL +++ QPVS+ + A +
Sbjct: 232 HYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKD 291
Query: 277 FKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKILRDE-- 334
F+ Y+ GIF G CG ++DHAV VG+ G NY LI+NSWG WG+ GY++I R
Sbjct: 292 FQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILIRNSWGTGWGENGYIRIKRGTGN 346
Query: 335 --GLCGIGTQSSYPL 347
G+CG+ T S YP+
Sbjct: 347 SYGVCGLYTSSFYPV 361
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 210 bits (535), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 101/217 (46%), Positives = 141/217 (64%), Gaps = 6/217 (2%)
Query: 135 DVPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTX 194
D+P S+DWR+ AV P+K+Q CG CWAFS VAAVEGI +I +LI LSEQQLVDC+T
Sbjct: 2 DLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTA 61
Query: 195 XXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDE 254
M AF++I+ N GI +E+ YPY+ G C+ I +YE VPS +E
Sbjct: 62 NHGCRGGW-MNPAFQFIVNNGGINSEETYPYRGQDGICNSTVNAPVVSIDSYENVPSHNE 120
Query: 255 QALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLI 314
Q+L KAV+ QPVS+ + A +F+ Y+ GIF G C +HA+T+VG+GT D ++W++
Sbjct: 121 QSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGTEND-KDFWIV 179
Query: 315 KNSWGDTWGDAGYMKILRD----EGLCGIGTQSSYPL 347
KNSWG WG++GY++ R+ +G CGI +SYP+
Sbjct: 180 KNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPV 216
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/217 (50%), Positives = 136/217 (62%), Gaps = 6/217 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCS-TX 194
+P +DWR AV IKDQ +CG CWAFS +AAVEGI KI+ +LI LSEQ+LVDC T
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 195 XXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXX-XXISNYEEVPSGD 253
M F++II N GI TE YPY A +G C+ I YE VP +
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 254 EQALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWL 313
E AL AV+ QPVS+ + A F+ Y GIF G CGT +DHAVTIVG+G TE G +YW+
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYG-TEGGIDYWI 179
Query: 314 IKNSWGDTWGDAGYMKILRD---EGLCGIGTQSSYPL 347
+KNSWG TWG+ GYM+I R+ G CGI ++SYP+
Sbjct: 180 VKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 207 bits (528), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 109/217 (50%), Positives = 133/217 (61%), Gaps = 6/217 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCS-TX 194
+P+ +DWR AV IK Q ECG CWAFSA+A VEGI KI LI LSEQ+L+DC T
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 195 XXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXX-XXISNYEEVPSGD 253
+ F++II N GI TE+ YPY A G C+ I YE VP +
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNN 120
Query: 254 EQALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWL 313
E AL AV+ QPVS+ + A FK Y GIF G CGT +DHAVTIVG+G TE G +YW+
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYG-TEGGIDYWI 179
Query: 314 IKNSWGDTWGDAGYMKILRD---EGLCGIGTQSSYPL 347
+KNSW TWG+ GYM+ILR+ G CGI T SYP+
Sbjct: 180 VKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 206 bits (523), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 135/217 (62%), Gaps = 6/217 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCS-TX 194
+P +DWR AV IKDQ +CG WAFS +AAVEGI KI+ +LI LSEQ+LVDC T
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 195 XXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXX-XXISNYEEVPSGD 253
M F++II N GI TE YPY A +G C+ I YE VP +
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 254 EQALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWL 313
E AL AV+ QPVS+ + A F+ Y GIF G CGT +DHAVTIVG+G TE G +YW+
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYG-TEGGIDYWI 179
Query: 314 IKNSWGDTWGDAGYMKILRD---EGLCGIGTQSSYPL 347
+KNSWG TWG+ GYM+I R+ G CGI ++SYP+
Sbjct: 180 VKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPV 216
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 204 bits (519), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 132/215 (61%), Gaps = 7/215 (3%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P+ +DWR K AV IK+Q++CG CWAFSAVAAVE I KI LI LSEQ+LVDC T
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTAS 60
Query: 196 XXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDEQ 255
M AF+YII N GI T+ YPY AVQG+C I+ ++ V +E
Sbjct: 61 HGCNGGW-MNNAFQYIITNGGIDTQQNYPYSAVQGSCK-PYRLRVVSINGFQRVTRNNES 118
Query: 256 ALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIK 315
AL AV+ QPVS+ + A F+ Y GIF G CGT +H V IVG+G T+ G NYW+++
Sbjct: 119 ALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYG-TQSGKNYWIVR 177
Query: 316 NSWGDTWGDAGYMKILRD----EGLCGIGTQSSYP 346
NSWG WG+ GY+ + R+ GLCGI SYP
Sbjct: 178 NSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYP 212
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/217 (48%), Positives = 132/217 (60%), Gaps = 6/217 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCS-TX 194
+P+ +DWR AV IK Q ECG WAFSA+A VEGI KI+ +LI LSEQ+L+DC T
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 195 XXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXX-XXISNYEEVPSGD 253
+ F++II + GI TE+ YPY A G C I YE VP +
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNN 120
Query: 254 EQALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWL 313
E AL AV+ QPVS+ + A FK Y GIF G CGT +DHA+ IVG+G TE G +YW+
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTAVDHAIVIVGYG-TEGGVDYWI 179
Query: 314 IKNSWGDTWGDAGYMKILRD---EGLCGIGTQSSYPL 347
+KNSW TWG+ GYM+ILR+ G CGI T SYP+
Sbjct: 180 VKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPV 216
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/317 (35%), Positives = 175/317 (55%), Gaps = 15/317 (4%)
Query: 39 HEQSVVEMH-EKWMAQHGRSYKDELEKEMRFKIFKENLEYIEKANKE---GNRTYKLGTN 94
H+ ++ H W +G+ YK++ E+ +R I+++NL+++ N E G +Y LG N
Sbjct: 3 HKDPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMN 62
Query: 95 RFSDLTNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKKAVTPIKDQ 154
D+T++E +L + ++PS R Y++ +P S+DWR+K VT +K Q
Sbjct: 63 HLGDMTSEEVMSLMSSLRVPSQWQRN-----ITYKSNPNRILPDSVDWREKGCVTEVKYQ 117
Query: 155 QECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXXXXXXXXXT--MEKAFEYII 212
CG WAFSAV A+E K+ L+ LS Q LVDCST M AF+YII
Sbjct: 118 GSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYII 177
Query: 213 QNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDEQALLKAVSMQ-PVSIGIA 271
N+GI ++ YPY+A+ C S Y E+P G E L +AV+ + PVS+G+
Sbjct: 178 DNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVD 237
Query: 272 AYTTEFKSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKI 330
A F Y+ G+ + C ++H V +VG+G +G YWL+KNSWG +G+ GY+++
Sbjct: 238 ARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFGEEGYIRM 296
Query: 331 LRDEG-LCGIGTQSSYP 346
R++G CGI + SYP
Sbjct: 297 ARNKGNHCGIASFPSYP 313
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 200 bits (509), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 117/320 (36%), Positives = 175/320 (54%), Gaps = 19/320 (5%)
Query: 38 THEQSVVEMHEKWMAQHGRSYKDELEKEMRFKIFKENLEYIEKAN---KEGNRTYKLGTN 94
T + S+ KW A H R Y E+ R ++++N++ IE N +EG ++ + N
Sbjct: 3 TFDHSLEAQWTKWKAMHNRLYGMN-EEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMN 61
Query: 95 RFSDLTNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKKAVTPIKDQ 154
F D+T++EFR + G++ P +Q + P S+DWR+K VTP+K+Q
Sbjct: 62 AFGDMTSEEFRQVMNGFQNRKPRKGKV------FQEPLFYEAPRSVDWREKGYVTPVKNQ 115
Query: 155 QECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXXXXXX-XXXTMEKAFEYIIQ 213
+CG WAFSA A+EG LI LSEQ LVDCS M+ AF+Y+
Sbjct: 116 GQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQD 175
Query: 214 NQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDEQALLKAVS-MQPVSIGIAA 272
N G+ +E+ YPY+A + +C + + ++P E+AL+KAV+ + P+S+ I A
Sbjct: 176 NGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDA 234
Query: 273 YTTEFKSYKEGI-FNGVCGTQ-LDHAVTIVGFG---TTEDGANYWLIKNSWGDTWGDAGY 327
F YKEGI F C ++ +DH V +VG+G T D YWL+KNSWG+ WG GY
Sbjct: 235 GHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 294
Query: 328 MKILRD-EGLCGIGTQSSYP 346
+K+ +D CGI + +SYP
Sbjct: 295 VKMAKDRRNHCGIASAASYP 314
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 200 bits (509), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 171/309 (55%), Gaps = 19/309 (6%)
Query: 49 KWMAQHGRSYKDELEKEMRFKIFKENLEYIEKAN---KEGNRTYKLGTNRFSDLTNDEFR 105
KW A H R Y E+ R ++++N++ IE N +EG ++ + N F D+T++EFR
Sbjct: 10 KWKAMHNRLYGMN-EEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFR 68
Query: 106 ALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKKAVTPIKDQQECGCCWAFSA 165
+ G + P +Q + P S+DWR+K VTP+K+Q +CG WAFSA
Sbjct: 69 QVMNGLQNRKPRKGKV------FQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSSWAFSA 122
Query: 166 VAAVEGITKISGANLIQLSEQQLVDCSTXXXXXX-XXXTMEKAFEYIIQNQGIATEDEYP 224
A+EG LI LSEQ LVDCS M+ AF+Y+ N G+ +E+ YP
Sbjct: 123 TGALEGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGLDSEESYP 182
Query: 225 YQAVQGTCSXXXXXXXXXISNYEEVPSGDEQALLKAVS-MQPVSIGIAAYTTEFKSYKEG 283
Y+A + +C + + ++P E+AL+KAV+ + P+S+ I A F YKEG
Sbjct: 183 YEATEESCKYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAIDAGHESFLFYKEG 241
Query: 284 I-FNGVCGTQ-LDHAVTIVGFG---TTEDGANYWLIKNSWGDTWGDAGYMKILRD-EGLC 337
I F C ++ +DH V +VG+G T DG YWL+KNSWG+ WG GY+K+ +D C
Sbjct: 242 IYFEPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 301
Query: 338 GIGTQSSYP 346
GI + +SYP
Sbjct: 302 GIASAASYP 310
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 197 bits (500), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 114/316 (36%), Positives = 176/316 (55%), Gaps = 13/316 (4%)
Query: 39 HEQSVVEMH-EKWMAQHGRSYKDELEKEMRFKIFKENLEYIEKANKE---GNRTYKLGTN 94
+ + +++ H E W H + Y +++++ R I+++NL+YI N E G TY+L N
Sbjct: 2 YPEEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMN 61
Query: 95 RFSDLTNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKKAVTPIKDQ 154
D+T++E TG K+P R Y P S+D+R K VTP+K+Q
Sbjct: 62 HLGDMTSEEVVQKMTGLKVPLSHSRSNDTL---YIPEWEGRAPDSVDYRKKGYVTPVKNQ 118
Query: 155 QECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXXXXXXXXXTMEKAFEYIIQN 214
+CG CWAFS+V A+EG K L+ LS Q LVDC + M AF+Y+ +N
Sbjct: 119 GQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGY-MTNAFQYVQKN 177
Query: 215 QGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDEQALLKAVS-MQPVSIGIAAY 273
+GI +ED YPY + +C Y E+P G+E+AL +AV+ + PVS+ I A
Sbjct: 178 RGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDAS 237
Query: 274 TTEFKSYKEGI-FNGVCGT-QLDHAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKIL 331
T F+ Y +G+ ++ C + L+HAV VG+G + G +W+IKNSWG+ WG+ GY+ +
Sbjct: 238 LTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG-IQKGNKHWIIKNSWGENWGNKGYILMA 296
Query: 332 RDE-GLCGIGTQSSYP 346
R++ CGI +S+P
Sbjct: 297 RNKNNACGIANLASFP 312
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 132/213 (61%), Gaps = 10/213 (4%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P +DWR K AVTP+K+Q CG CWAFS V+ VE I +I NLI LSEQ+LVDC
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKN 60
Query: 196 XXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDEQ 255
+ A++YII N GI T+ YPY+AVQG C I Y VP +E
Sbjct: 61 HGCLGGAFVF-AYQYIINNGGIDTQANYPYKAVQGPCQ--AASKVVSIDGYNGVPFCNEX 117
Query: 256 ALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIK 315
AL +AV++QP ++ I A + +F+ Y GIF+G CGT+L+H VTIVG+ ANYW+++
Sbjct: 118 ALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGY-----QANYWIVR 172
Query: 316 NSWGDTWGDAGYMKILR--DEGLCGIGTQSSYP 346
NSWG WG+ GY+++LR GLCGI YP
Sbjct: 173 NSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYP 205
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 194 bits (494), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 131/213 (61%), Gaps = 10/213 (4%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P +DWR K AVTP+K+Q +CG CWAFS V+ VE I +I NLI LSEQQLVDC+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKKN 60
Query: 196 XXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDEQ 255
+ A++YII N GI TE YPY+AVQG C I Y+ VP +E
Sbjct: 61 HGCKGGAFVY-AYQYIIDNGGIDTEANYPYKAVQGPCR--AAKKVVRIDGYKGVPHCNEN 117
Query: 256 ALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIK 315
AL KAV+ QP + I A + +F+ YK GIF+G CGT+L+H V IVG+ +YW+++
Sbjct: 118 ALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGTKLNHGVVIVGYWK-----DYWIVR 172
Query: 316 NSWGDTWGDAGYMKILR--DEGLCGIGTQSSYP 346
NSWG WG+ GY+++ R GLCGI YP
Sbjct: 173 NSWGRYWGEQGYIRMKRVGGCGLCGIARLPYYP 205
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 131/216 (60%), Gaps = 8/216 (3%)
Query: 137 PTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXXX 196
P S+DWR K AVTP+K+Q CG WAFS +A VEGI KI NL++LSEQ+LVDC
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSY 61
Query: 197 XXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTC-SXXXXXXXXXISNYEEVPSGDEQ 255
+ +Y+ N G+ T YPYQA Q C + I+ Y+ VPS E
Sbjct: 62 GCKGGY-QTTSLQYVA-NNGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXET 119
Query: 256 ALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIK 315
+ L A++ QP+S+ + A F+ YK G+F+G CGT+LDHAVT VG+GT+ DG NY +IK
Sbjct: 120 SFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTS-DGKNYIIIK 178
Query: 316 NSWGDTWGDAGYMKILR----DEGLCGIGTQSSYPL 347
NSWG WG+ GYM++ R +G CG+ S YP
Sbjct: 179 NSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPF 214
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 126/213 (59%), Gaps = 10/213 (4%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P +DWR K AV P+K+Q +CG CWAFS V VE I +I NLI LSEQQLVDCS
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKKN 60
Query: 196 XXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDEQ 255
++A++YII N GI TE YPY+A QG C I + VP +E
Sbjct: 61 HGCKGGY-FDRAYQYIIANGGIDTEANYPYKAFQGPCR--AAKKVVRIDGCKGVPQCNEN 117
Query: 256 ALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIK 315
AL AV+ QP + I A + +F+ YK GIF G CGT+L+H V IVG+G +YW+++
Sbjct: 118 ALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVVIVGYGK-----DYWIVR 172
Query: 316 NSWGDTWGDAGY--MKILRDEGLCGIGTQSSYP 346
NSWG WG+ GY MK + GLCGI YP
Sbjct: 173 NSWGRHWGEQGYTRMKRVGGCGLCGIARLPFYP 205
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 188 bits (477), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 119/316 (37%), Positives = 166/316 (52%), Gaps = 16/316 (5%)
Query: 43 VVEMHEKWMAQHGRSYKDELEKEMRFKIFKENLEYIEKAN---KEGNRTYKLGTNRFSDL 99
V E E + + RSY + E+ R +IF++ LE E+ N ++G +Y LG N F+D+
Sbjct: 18 VAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDM 77
Query: 100 TNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMT---DVPTSLDWRDKKAVTPIKDQQE 156
T +E +A G MP+ H+ + ++L + P S DWRD+ V+P+K+Q
Sbjct: 78 TPEEMKAYTHGLIMPADLHKNGIPIKTR-EDLGLNASVRYPASFDWRDQGMVSPVKNQGS 136
Query: 157 CGCCWAFSAVAAVEGITKIS-GANL-IQLSEQQLVDCSTXXXXXXXXXTMEKAFEYIIQN 214
CG WAFS+ A+E KI+ GA +SEQQLVDC M AF Y+ QN
Sbjct: 137 CGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDC-VPNALGCSGGWMNDAFTYVAQN 195
Query: 215 QGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDEQALLKAVSMQ-PVSIGIAAY 273
GI +E YPY+ G C +S Y + DE L V+ + PV++ A
Sbjct: 196 GGIDSEGAYPYEMADGNCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVAFDA- 254
Query: 274 TTEFKSYKEGI-FNGVCGT-QLDHAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKIL 331
F SY G+ +N C T + HAV IVG+G E+G +YWL+KNSWGD WG GY KI
Sbjct: 255 DDPFGSYSGGVYYNPTCETNKFTHAVLIVGYG-NENGQDYWLVKNSWGDGWGLDGYFKIA 313
Query: 332 RD-EGLCGIGTQSSYP 346
R+ CGI +S P
Sbjct: 314 RNANNHCGIAGVASVP 329
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 131/216 (60%), Gaps = 12/216 (5%)
Query: 137 PTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXXX 196
P S+DWR+K AVTP+K+Q CG CWAFS VA +EGI KI LI LSEQ+L+DC
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSH 61
Query: 197 XXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTC-SXXXXXXXXXISNYEEVPSGDEQ 255
+ +Y++ N G+ TE EYPY+ QG C + I+ Y+ VP+ DE
Sbjct: 62 GCDGGY-QTTSLQYVVDN-GVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDEI 119
Query: 256 ALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIK 315
+L++A++ QPVS+ + F+ YK GI+ G CGT DHAVT VG+G T Y L+K
Sbjct: 120 SLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGYGKT-----YLLLK 174
Query: 316 NSWGDTWGDAGYMKIL----RDEGLCGIGTQSSYPL 347
NSWG WG+ GY++I R +G CG+ T S +P+
Sbjct: 175 NSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPI 210
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 184 bits (467), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 102/261 (39%), Positives = 147/261 (56%), Gaps = 15/261 (5%)
Query: 94 NRFSDLTNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKKAVTPIKD 153
N F D+T++EFR + G++ P +Q + P S+DWR+K VTP+K+
Sbjct: 3 NAFGDMTSEEFRQVMNGFQNRKPRKGKV------FQEPLFYEAPRSVDWREKGYVTPVKN 56
Query: 154 QQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCS-TXXXXXXXXXTMEKAFEYII 212
Q +CG CWAFSA A+EG LI LSEQ LVDCS M+ AF+Y+
Sbjct: 57 QGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQ 116
Query: 213 QNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDEQALLKAVS-MQPVSIGIA 271
N G+ +E+ YPY+A + +C + + ++P E+AL+KAV+ + P+S+ I
Sbjct: 117 DNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPK-QEKALMKAVATVGPISVAID 175
Query: 272 AYTTEFKSYKEGI-FNGVCGTQ-LDHAVTIVGFG---TTEDGANYWLIKNSWGDTWGDAG 326
A F YKEGI F C ++ +DH V +VG+G T D YWL+KNSWG+ WG G
Sbjct: 176 AGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGG 235
Query: 327 YMKILRD-EGLCGIGTQSSYP 346
Y+K+ +D CGI + +SYP
Sbjct: 236 YVKMAKDRRNHCGIASAASYP 256
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 114/307 (37%), Positives = 165/307 (53%), Gaps = 27/307 (8%)
Query: 54 HGRSYKDELEKEMRFKIFKENLEYIEKAN---KEGNRTYKLGTNRFSDLTNDEFRALYTG 110
H +SY +E+ R IFK+N+ I + N ++G TY N+F D++ +EF A
Sbjct: 34 HKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEFLAYVNR 93
Query: 111 YKMPSPSHRXXXXXXFKYQNLSMTDVPT------SLDWRDKKAVTPIKDQQECGCCWAFS 164
K P H +NL M V + S+DWR AV+ +KDQ +CG W+FS
Sbjct: 94 GKAQKPKHP---------ENLRMPYVSSKKPLAASVDWR-SNAVSEVKDQGQCGSSWSFS 143
Query: 165 AVAAVEGITKISGANLIQLSEQQLVDCSTXXXXXXXXXT-MEKAFEYIIQNQGIATEDEY 223
AVEG + L LSEQ L+DCS+ M+ AF Y I + GI +E Y
Sbjct: 144 TTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSY-IHDYGIMSESAY 202
Query: 224 PYQAVQGTCSXXXXXXXXXISNYEEVPSGDEQALLKAVSMQ-PVSIGIAAYTTEFKSYKE 282
PY+A C +S Y ++PSGDE +L AV PV++ I A T E + Y
Sbjct: 203 PYEAQGDYCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDA-TDELQFYSG 261
Query: 283 GIF-NGVCG-TQLDHAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKILRDEG-LCGI 339
G+F + C + L+H V +VG+G +++G +YW++KNSWG WG++GY + +R+ G CGI
Sbjct: 262 GLFYDQTCNQSDLNHGVLVVGYG-SDNGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGI 320
Query: 340 GTQSSYP 346
T +SYP
Sbjct: 321 ATAASYP 327
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 182 bits (461), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 89/223 (39%), Positives = 128/223 (57%), Gaps = 5/223 (2%)
Query: 130 NLSMTDVPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLV 189
N+ +++P +DWR + VTP+KDQ++CG CWAFS A+EG L+ LSEQ+L+
Sbjct: 1 NVLPSELPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELM 60
Query: 190 DCS-TXXXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEE 248
DCS M AF+Y++ + GI +ED YPY A C I +++
Sbjct: 61 DCSRAEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEECRAQSCEKVVKILGFKD 120
Query: 249 VPSGDEQALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGT-TED 307
VP E A+ A++ PVSI I A F+ Y EG+F+ CGT LDH V +VG+GT E
Sbjct: 121 VPRRSEAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDASCGTDLDHGVLLVGYGTDKES 180
Query: 308 GANYWLIKNSWGDTWGDAGYMKILR---DEGLCGIGTQSSYPL 347
++W++KNSWG WG GYM + +EG CG+ +S+P+
Sbjct: 181 KKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPV 223
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 174 bits (441), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 129/219 (58%), Gaps = 12/219 (5%)
Query: 137 PTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXXX 196
P S+DWR K AVT +KDQ CG CWAF A A+EGI I+ LI +SEQQ+VDC T
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 197 XXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDEQA 256
+ AF ++I N GIA++ YPY V GTC I Y VP+ A
Sbjct: 62 XXXGGD-ADDAFRWVITNGGIASDANYPYTGVDGTCD-LNKPIAARIDGYTNVPN-SSSA 118
Query: 257 LLKAVSMQPVSIGIAAYTTEFKSYK-EGIFNGVCGTQ----LDHAVTIVGFGTTEDGANY 311
LL AV+ QPVS+ I +T F+ Y GIF G + +DH V IVG+G+ A+Y
Sbjct: 119 LLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNADY 178
Query: 312 WLIKNSWGDTWGDAGYMKILRD----EGLCGIGTQSSYP 346
W++KNSWG WG GY+ I R+ +G+C I SYP
Sbjct: 179 WIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYP 217
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 174 bits (441), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 129/219 (58%), Gaps = 8/219 (3%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P S+DWR K VTP+K+Q++CG CWAFSA A+EG L+ LSEQ LVDCS
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 196 XXXXXXXT-MEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDE 254
M +AF+Y+ +N G+ +E+ YPY AV C + + V G E
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDTGFTVVAPGKE 120
Query: 255 QALLKAVS-MQPVSIGIAAYTTEFKSYKEGI-FNGVCGTQ-LDHAVTIVGF---GTTEDG 308
+AL+KAV+ + P+S+ + A + F+ YK GI F C ++ LDH V +VG+ G D
Sbjct: 121 KALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDN 180
Query: 309 ANYWLIKNSWGDTWGDAGYMKILRDE-GLCGIGTQSSYP 346
+ YWL+KNSWG WG GY+KI +D+ CGI T +SYP
Sbjct: 181 SKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYP 219
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 128/219 (58%), Gaps = 8/219 (3%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P S+DWR K VTP+K+Q++CG WAFSA A+EG L+ LSEQ LVDCS
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 196 XXXXXXXT-MEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDE 254
M +AF+Y+ +N G+ +E+ YPY AV C + + V G E
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVAQDTGFTVVAPGKE 120
Query: 255 QALLKAVS-MQPVSIGIAAYTTEFKSYKEGI-FNGVCGTQ-LDHAVTIVGF---GTTEDG 308
+AL+KAV+ + P+S+ + A + F+ YK GI F C ++ LDH V +VG+ G D
Sbjct: 121 KALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDN 180
Query: 309 ANYWLIKNSWGDTWGDAGYMKILRDE-GLCGIGTQSSYP 346
+ YWL+KNSWG WG GY+KI +D+ CGI T +SYP
Sbjct: 181 SKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYP 219
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 125/216 (57%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P S+DWR+K VT +K Q CG CWAFSAV A+E K+ L+ LS Q LVDCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 196 XXXXXXXT--MEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGD 253
M AF+YII N+GI ++ YPY+A+ C S Y E+P G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 120
Query: 254 EQALLKAVSMQ-PVSIGIAAYTTEFKSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+G+ A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 179
Query: 312 WLIKNSWGDTWGDAGYMKILRDEG-LCGIGTQSSYP 346
WL+KNSWG +G+ GY+++ R++G CGI + SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 125/216 (57%), Gaps = 8/216 (3%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P ++DWR K AVTP++ Q CG CWAFSAVA VEGI KI L++LSEQ+LVDC
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 196 XXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTC-SXXXXXXXXXISNYEEVPSGDE 254
A EY+ +N GI +YPY+A QGTC + S V +E
Sbjct: 61 HGCKGGYP-PYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNE 118
Query: 255 QALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLI 314
LL A++ QPVS+ + + F+ YK GIF G CGT++DHAVT VG+G + LI
Sbjct: 119 GNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYI-LI 177
Query: 315 KNSWGDTWGDAGYMKILR----DEGLCGIGTQSSYP 346
KNSWG WG+ GY++I R G+CG+ S YP
Sbjct: 178 KNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYP 213
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 131/215 (60%), Gaps = 6/215 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
P S+D+R+K VTP+K+Q +CG CWAFS+V A+EG K L+ LS Q LVDC +
Sbjct: 1 APDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 196 XXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDEQ 255
M AF+Y+ +N+GI +ED YPY + +C Y E+P G+E+
Sbjct: 61 DGCGGGY-MTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEK 119
Query: 256 ALLKAVS-MQPVSIGIAAYTTEFKSYKEGI-FNGVCGT-QLDHAVTIVGFGTTEDGANYW 312
AL +AV+ + PVS+ I A T F+ Y +G+ ++ C + L+HAV VG+G ++ G +W
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESK-GNKHW 178
Query: 313 LIKNSWGDTWGDAGYMKILRDE-GLCGIGTQSSYP 346
+IKNSWG+ WG GY+K+ R++ CGI +S+P
Sbjct: 179 IIKNSWGENWGMGGYIKMARNKNNACGIANLASFP 213
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 130/220 (59%), Gaps = 9/220 (4%)
Query: 135 DVPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCS-T 193
+ P S+DWR+K VTP+K+Q +CG CWAFSA A+EG LI LSEQ LVDCS
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 194 XXXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGD 253
M+ AF+Y+ N G+ +E+ YPY+A + +C + + ++P
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-Q 119
Query: 254 EQALLKAVS-MQPVSIGIAAYTTEFKSYKEGI-FNGVCGTQ-LDHAVTIVGFG---TTED 307
E+AL+KAV+ + P+S+ I A F YKEGI F C ++ +DH V +VG+G T D
Sbjct: 120 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESD 179
Query: 308 GANYWLIKNSWGDTWGDAGYMKILRD-EGLCGIGTQSSYP 346
YWL+KNSWG+ WG GY+K+ +D CGI + +SYP
Sbjct: 180 NNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 219
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 125/216 (57%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P S+DWR+K VT +K Q CG CWAFSAV A+E K+ L+ LS Q LVDCST
Sbjct: 4 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 63
Query: 196 XXXXXXXT--MEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGD 253
M AF+YII N+GI ++ YPY+A+ C S Y E+P G
Sbjct: 64 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 123
Query: 254 EQALLKAVSMQ-PVSIGIAAYTTEFKSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+G+ A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 124 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 182
Query: 312 WLIKNSWGDTWGDAGYMKILRDEG-LCGIGTQSSYP 346
WL+KNSWG +G+ GY+++ R++G CGI + SYP
Sbjct: 183 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 218
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 125/216 (57%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P S+DWR+K VT +K Q CG CWAFSAV A+E K+ L+ LS Q LVDCST
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 196 XXXXXXXT--MEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGD 253
M AF+YII N+GI ++ YPY+A+ C S Y E+P G
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 121
Query: 254 EQALLKAVSMQ-PVSIGIAAYTTEFKSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+G+ A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 122 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 180
Query: 312 WLIKNSWGDTWGDAGYMKILRDEG-LCGIGTQSSYP 346
WL+KNSWG +G+ GY+++ R++G CGI + SYP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 216
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 125/216 (57%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P S+DWR+K VT +K Q CG CWAFSAV A+E K+ L+ LS Q LVDCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 196 XXXXXXXT--MEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGD 253
M AF+YII N+GI ++ YPY+A+ C S Y E+P G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 120
Query: 254 EQALLKAVSMQ-PVSIGIAAYTTEFKSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+G+ A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 179
Query: 312 WLIKNSWGDTWGDAGYMKILRDEG-LCGIGTQSSYP 346
WL+KNSWG +G+ GY+++ R++G CGI + SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 129/219 (58%), Gaps = 9/219 (4%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCS-TX 194
P S+DWR+K VTP+K+Q +CG CWAFSA A+EG LI LSEQ LVDCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 195 XXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDE 254
M+ AF+Y+ N G+ +E+ YPY+A + +C + + ++P E
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPK-QE 119
Query: 255 QALLKAVS-MQPVSIGIAAYTTEFKSYKEGI-FNGVCGTQ-LDHAVTIVGFG---TTEDG 308
+AL+KAV+ + P+S+ I A F YKEGI F C ++ +DH V +VG+G T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 309 ANYWLIKNSWGDTWGDAGYMKILRD-EGLCGIGTQSSYP 346
YWL+KNSWG+ WG GY+K+ +D CGI + +SYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 218
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 129/219 (58%), Gaps = 9/219 (4%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCS-TX 194
P S+DWR+K VTP+K+Q +CG CWAFSA A+EG LI LSEQ LVDCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 195 XXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDE 254
M+ AF+Y+ N G+ +E+ YPY+A + +C + + ++P E
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QE 119
Query: 255 QALLKAVS-MQPVSIGIAAYTTEFKSYKEGI-FNGVCGTQ-LDHAVTIVGFG---TTEDG 308
+AL+KAV+ + P+S+ I A F YKEGI F C ++ +DH V +VG+G T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 309 ANYWLIKNSWGDTWGDAGYMKILRD-EGLCGIGTQSSYP 346
YWL+KNSWG+ WG GY+K+ +D CGI + +SYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 218
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/311 (33%), Positives = 169/311 (54%), Gaps = 16/311 (5%)
Query: 45 EMHEKWMAQHGRSYKDELEKEMRFKIFKENLEYIEKANKE---GNRTYKLGTNRFSDLTN 101
++ +W + + Y + + + R I+++N+++I++ N G TY LG N+F+D+T
Sbjct: 3 DLWHQWKRMYNKEY-NGADDQHRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTF 61
Query: 102 DEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTDVPTSLDWRDKKAVTPIKDQQECGCCW 161
+EF+A Y +M S ++ N + VP +DWR+ VT +KDQ CG W
Sbjct: 62 EEFKAKYL-TEMSRASDILSHGVPYEANNRA---VPDKIDWRESGYVTEVKDQGNCGSGW 117
Query: 162 AFSAVAAVEGITKISGANLIQLSEQQLVDCSTXXXXXX-XXXTMEKAFEYIIQNQGIATE 220
AFS +EG + I SEQQLVDCS ME A++Y+ Q G+ TE
Sbjct: 118 AFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYLKQ-FGLETE 176
Query: 221 DEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDEQALLKAVSMQ-PVSIGIAAYTTEFKS 279
YPY AV+G C ++ + V SG E L V + P ++ + ++F
Sbjct: 177 SSYPYTAVEGQCRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDV-ESDFMM 235
Query: 280 YKEGIFNG-VCGT-QLDHAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKILRDEG-L 336
Y+ GI+ C +++HAV VG+G T+ G +YW++KNSWG +WG+ GY++++R+ G +
Sbjct: 236 YRSGIYQSQTCSPLRVNHAVLAVGYG-TQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNM 294
Query: 337 CGIGTQSSYPL 347
CGI + +S P+
Sbjct: 295 CGIASLASLPM 305
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 169 bits (427), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 125/216 (57%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P S+DWR+K VT +K Q CG CWAFSAV A+E K+ L+ LS Q LVDCST
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 196 XXXXXXXT--MEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGD 253
M AF+YII N+GI ++ YPY+A+ C S Y E+P G
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 121
Query: 254 EQALLKAVSMQ-PVSIGIAAYTTEFKSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+G+ A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 122 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 180
Query: 312 WLIKNSWGDTWGDAGYMKILRDEG-LCGIGTQSSYP 346
WL+KNSWG +G+ GY+++ R++G CGI + SYP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 216
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/216 (41%), Positives = 125/216 (57%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P S+DWR+K VT +K Q CG CWAFSAV A+E K+ L+ LS Q LVDCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 196 XXXXXXXT--MEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGD 253
M AF+YII N+GI ++ YPY+A+ C S Y E+P G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 120
Query: 254 EQALLKAVSMQ-PVSIGIAAYTTEFKSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+G+ A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 179
Query: 312 WLIKNSWGDTWGDAGYMKILRDEG-LCGIGTQSSYP 346
WL+KNSWG +G+ GY+++ R++G CGI + SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 168 bits (425), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 124/216 (57%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P S+DWR+K VT +K Q CG CWAFSAV A+E K+ L+ LS Q LVDCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 196 XXXXXXXT--MEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGD 253
M AF+YII N+GI ++ YPY+A+ C Y E+P G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSAYRAATCRKYTELPYGR 120
Query: 254 EQALLKAVSMQ-PVSIGIAAYTTEFKSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+G+ A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 179
Query: 312 WLIKNSWGDTWGDAGYMKILRDEG-LCGIGTQSSYP 346
WL+KNSWG +G+ GY+++ R++G CGI + SYP
Sbjct: 180 WLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYP 215
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 95/216 (43%), Positives = 125/216 (57%), Gaps = 8/216 (3%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P ++DWR K AVTP++ Q CG CWAFSAVA VEGI KI L++LSEQ+LVDC
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRS 60
Query: 196 XXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTC-SXXXXXXXXXISNYEEVPSGDE 254
A EY+ +N GI +YPY+A QGTC + S V +E
Sbjct: 61 HGCKGGYP-PYALEYVAKN-GIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNE 118
Query: 255 QALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLI 314
LL A++ QPVS+ + + F+ YK GIF G CGT+++HAVT VG+G + LI
Sbjct: 119 GNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVEHAVTAVGYGKSGGKGYI-LI 177
Query: 315 KNSWGDTWGDAGYMKILR----DEGLCGIGTQSSYP 346
KNSWG WG+ GY++I R G+CG+ S YP
Sbjct: 178 KNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYP 213
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 124/216 (57%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P S+DWR+K VT +K Q CG CWAFSAV A+E K+ L+ LS Q LVDCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 196 XXXXXXXT--MEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGD 253
M AF+YII N+GI ++ YPY+A+ C Y E+P G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCRKYTELPYGR 120
Query: 254 EQALLKAVSMQ-PVSIGIAAYTTEFKSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+G+ A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 179
Query: 312 WLIKNSWGDTWGDAGYMKILRDEG-LCGIGTQSSYP 346
WL+KNSWG +G+ GY+++ R++G CGI + SYP
Sbjct: 180 WLVKNSWGHNFGEKGYIRMARNKGNHCGIASFPSYP 215
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 129/215 (60%), Gaps = 6/215 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
P S+D+R K VTP+K+Q +CG CWAFS+V A+EG K L+ LS Q LVDC +
Sbjct: 1 APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 196 XXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDEQ 255
M AF+Y+ +N+GI +ED YPY + +C Y E+P G+E+
Sbjct: 61 DGCGGGY-MTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEK 119
Query: 256 ALLKAVS-MQPVSIGIAAYTTEFKSYKEGI-FNGVCGT-QLDHAVTIVGFGTTEDGANYW 312
AL +AV+ + PVS+ I A T F+ Y +G+ ++ C + L+HAV VG+G + G +W
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG-IQKGNKHW 178
Query: 313 LIKNSWGDTWGDAGYMKILRDE-GLCGIGTQSSYP 346
+IKNSWG+ WG+ GY+ + R++ CGI +S+P
Sbjct: 179 IIKNSWGENWGNKGYILMARNKNNACGIANLASFP 213
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 129/214 (60%), Gaps = 6/214 (2%)
Query: 137 PTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXXX 196
P S+D+R K VTP+K+Q +CG CWAFS+V A+EG K L+ LS Q LVDC +
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 60
Query: 197 XXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDEQA 256
M AF+Y+ +N+GI +ED YPY + +C Y E+P G+E+A
Sbjct: 61 GCGGGY-MTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKA 119
Query: 257 LLKAVS-MQPVSIGIAAYTTEFKSYKEGI-FNGVCGT-QLDHAVTIVGFGTTEDGANYWL 313
L +AV+ + PVS+ I A T F+ Y +G+ ++ C + L+HAV VG+G + G +W+
Sbjct: 120 LKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG-IQKGNKHWI 178
Query: 314 IKNSWGDTWGDAGYMKILRDE-GLCGIGTQSSYP 346
IKNSWG+ WG+ GY+ + R++ CGI +S+P
Sbjct: 179 IKNSWGENWGNKGYILMARNKNNACGIANLASFP 212
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/217 (44%), Positives = 127/217 (58%), Gaps = 8/217 (3%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P S+DWR K AVTP+K Q C CWAFS VA VEGI KI NL++LSEQ+LVDC
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQS 60
Query: 196 XXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISN-YEEVPSGDE 254
+ +Y+ QN GI +YPY A Q TC +N V S +E
Sbjct: 61 YGCNRGY-QSTSLQYVAQN-GIHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNNE 118
Query: 255 QALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLI 314
+LL A++ QPVS+ + + +F++YK GIF G CGT++DHAVT VG+G + LI
Sbjct: 119 GSLLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCGTKVDHAVTAVGYGKSGGKGYI-LI 177
Query: 315 KNSWGDTWGDAGYMKILR----DEGLCGIGTQSSYPL 347
KNSWG WG+ GY++I R G+CG+ S YP+
Sbjct: 178 KNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPI 214
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 129/215 (60%), Gaps = 6/215 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
P S+D+R K VTP+K+Q +CG CWAFS+V A+EG K L+ LS Q LVDC +
Sbjct: 3 APDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 62
Query: 196 XXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDEQ 255
M AF+Y+ +N+GI +ED YPY + +C Y E+P G+E+
Sbjct: 63 DGCGGGY-MTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEK 121
Query: 256 ALLKAVS-MQPVSIGIAAYTTEFKSYKEGI-FNGVCGT-QLDHAVTIVGFGTTEDGANYW 312
AL +AV+ + PVS+ I A T F+ Y +G+ ++ C + L+HAV VG+G + G +W
Sbjct: 122 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG-IQKGNKHW 180
Query: 313 LIKNSWGDTWGDAGYMKILRDE-GLCGIGTQSSYP 346
+IKNSWG+ WG+ GY+ + R++ CGI +S+P
Sbjct: 181 IIKNSWGENWGNKGYILMARNKNNACGIANLASFP 215
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 126/215 (58%), Gaps = 6/215 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
P S+D+R K VTP+K+Q +CG CWAFS+V A+EG K L+ LS Q LVDC +
Sbjct: 1 TPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEN 60
Query: 196 XXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDEQ 255
M AF+Y+ +N+GI +ED YPY +C Y E+P G+E+
Sbjct: 61 DGCGGGY-MTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEK 119
Query: 256 ALLKAVS-MQPVSIGIAAYTTEFKSYKEGIF--NGVCGTQLDHAVTIVGFGTTEDGANYW 312
AL +AV+ + PVS+ I A T F+ Y +G++ L+HAV VG+G + G +W
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYG-IQKGNKHW 178
Query: 313 LIKNSWGDTWGDAGYMKILRDE-GLCGIGTQSSYP 346
+IKNSWG++WG+ GY+ + R++ CGI +S+P
Sbjct: 179 IIKNSWGESWGNKGYILMARNKNNACGIANLASFP 213
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 129/220 (58%), Gaps = 9/220 (4%)
Query: 135 DVPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCS-T 193
+ P S+DWR+K VTP+K+Q +CG WAFSA A+EG LI LSEQ LVDCS
Sbjct: 1 EAPRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 194 XXXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGD 253
M+ AF+Y+ N G+ +E+ YPY+A + +C + + ++P
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-Q 119
Query: 254 EQALLKAVS-MQPVSIGIAAYTTEFKSYKEGI-FNGVCGTQ-LDHAVTIVGFG---TTED 307
E+AL+KAV+ + P+S+ I A F YKEGI F C ++ +DH V +VG+G T D
Sbjct: 120 EKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESD 179
Query: 308 GANYWLIKNSWGDTWGDAGYMKILRD-EGLCGIGTQSSYP 346
YWL+KNSWG+ WG GY+K+ +D CGI + +SYP
Sbjct: 180 NNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 219
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 9/219 (4%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCS-TX 194
P S+DWR+K VTP+K+Q +CG WAFSA A+EG LI LSEQ LVDCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 195 XXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDE 254
M+ AF+Y+ N G+ +E+ YPY+A + +C + + ++P E
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QE 119
Query: 255 QALLKAVS-MQPVSIGIAAYTTEFKSYKEGI-FNGVCGTQ-LDHAVTIVGFG---TTEDG 308
+AL+KAV+ + P+S+ I A F YKEGI F C ++ +DH V +VG+G T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 309 ANYWLIKNSWGDTWGDAGYMKILRD-EGLCGIGTQSSYP 346
YWL+KNSWG+ WG GY+K+ +D CGI + +SYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 218
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 124/216 (57%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P S+DWR+K VT +K Q CG WAFSAV A+E K+ L+ LS Q LVDCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 196 XXXXXXXT--MEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGD 253
M AF+YII N+GI ++ YPY+A+ C S Y E+P G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 120
Query: 254 EQALLKAVSMQ-PVSIGIAAYTTEFKSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+G+ A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 179
Query: 312 WLIKNSWGDTWGDAGYMKILRDEG-LCGIGTQSSYP 346
WL+KNSWG +G+ GY+++ R++G CGI + SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 124/216 (57%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P S+DWR+K VT +K Q CG WAFSAV A+E K+ L+ LS Q LVDCST
Sbjct: 3 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 62
Query: 196 XXXXXXXT--MEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGD 253
M AF+YII N+GI ++ YPY+A+ C S Y E+P G
Sbjct: 63 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 122
Query: 254 EQALLKAVSMQ-PVSIGIAAYTTEFKSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+G+ A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 123 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 181
Query: 312 WLIKNSWGDTWGDAGYMKILRDEG-LCGIGTQSSYP 346
WL+KNSWG +G+ GY+++ R++G CGI + SYP
Sbjct: 182 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 217
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 9/219 (4%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCS-TX 194
P S+DWR+K VTP+K+Q +CG WAFSA A+EG LI LSEQ LVDCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 195 XXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDE 254
M+ AF+Y+ N G+ +E+ YPY+A + +C + + ++P E
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QE 119
Query: 255 QALLKAVS-MQPVSIGIAAYTTEFKSYKEGI-FNGVCGTQ-LDHAVTIVGFG---TTEDG 308
+AL+KAV+ + P+S+ I A F YKEGI F C ++ +DH V +VG+G T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 309 ANYWLIKNSWGDTWGDAGYMKILRD-EGLCGIGTQSSYP 346
YWL+KNSWG+ WG GY+K+ +D CGI + +SYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 218
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 124/216 (57%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P S+DWR+K VT +K Q CG WAFSAV A+E K+ L+ LS Q LVDCST
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 196 XXXXXXXT--MEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGD 253
M AF+YII N+GI ++ YPY+A+ C S Y E+P G
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGR 121
Query: 254 EQALLKAVSMQ-PVSIGIAAYTTEFKSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+G+ A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 122 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 180
Query: 312 WLIKNSWGDTWGDAGYMKILRDEG-LCGIGTQSSYP 346
WL+KNSWG +G+ GY+++ R++G CGI + SYP
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 216
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 164 bits (416), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 88/216 (40%), Positives = 124/216 (57%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P S+DWR+K VT +K Q CG WAFSAV A+E K+ L+ LS Q LVDCST
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 196 XXXXXXXT--MEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGD 253
M AF+YII N+GI ++ YPY+A+ C S Y E+P G
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLKCQYDSKYRAATCSKYTELPYGR 120
Query: 254 EQALLKAVSMQ-PVSIGIAAYTTEFKSYKEGI-FNGVCGTQLDHAVTIVGFGTTEDGANY 311
E L +AV+ + PVS+G+ A F Y+ G+ + C ++H V +VG+G +G Y
Sbjct: 121 EDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDL-NGKEY 179
Query: 312 WLIKNSWGDTWGDAGYMKILRDEG-LCGIGTQSSYP 346
WL+KNSWG +G+ GY+++ R++G CGI + SYP
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 215
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 164 bits (416), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 9/219 (4%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCS-TX 194
P S+DWR+K VTP+K+Q +CG WAFSA A+EG LI LSEQ LVDCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 195 XXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDE 254
M+ AF+Y+ N G+ +E+ YPY+A + +C + + ++P E
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPK-QE 119
Query: 255 QALLKAVS-MQPVSIGIAAYTTEFKSYKEGI-FNGVCGTQ-LDHAVTIVGFG---TTEDG 308
+AL+KAV+ + P+S+ I A F YKEGI F C ++ +DH V +VG+G T D
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDD 179
Query: 309 ANYWLIKNSWGDTWGDAGYMKILRD-EGLCGIGTQSSYP 346
YWL+KNSWG+ WG GY+K+ +D CGI + +SYP
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 218
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 164 bits (415), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 126/215 (58%), Gaps = 6/215 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
P S+D+R K VTP+K+Q +CG CWAFS+V A+EG K + L+ L+ Q LVDC +
Sbjct: 1 APDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSEN 60
Query: 196 XXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDEQ 255
M AF+Y+ +N+GI +ED YPY +C Y E+P G+E
Sbjct: 61 DGCGGGY-MTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEA 119
Query: 256 ALLKAV-SMQPVSIGIAAYTTEFKSYKEGIF--NGVCGTQLDHAVTIVGFGTTEDGANYW 312
AL +AV ++ PVS+ I A T F+ Y G++ L+HAV VG+G + G +W
Sbjct: 120 ALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYG-IQAGNKHW 178
Query: 313 LIKNSWGDTWGDAGYMKILRDE-GLCGIGTQSSYP 346
+IKNSWG++WG+AGY+ + R++ CGI +S+P
Sbjct: 179 IIKNSWGESWGNAGYILMARNKNNACGIANLASFP 213
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 164 bits (414), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 128/212 (60%), Gaps = 6/212 (2%)
Query: 139 SLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXXXXX 198
S+D+R K VTP+K+Q +CG CWAFS+V A+EG K L+ LS Q LVDC +
Sbjct: 2 SVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGC 61
Query: 199 XXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDEQALL 258
M AF+Y+ +N+GI +ED YPY + +C Y E+P G+E+AL
Sbjct: 62 GGGY-MTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALK 120
Query: 259 KAVS-MQPVSIGIAAYTTEFKSYKEGI-FNGVCGT-QLDHAVTIVGFGTTEDGANYWLIK 315
+AV+ + PVS+ I A T F+ Y +G+ ++ C + L+HAV VG+G + G +W+IK
Sbjct: 121 RAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYG-IQKGNKHWIIK 179
Query: 316 NSWGDTWGDAGYMKILRDE-GLCGIGTQSSYP 346
NSWG+ WG+ GY+ + R++ CGI +S+P
Sbjct: 180 NSWGENWGNKGYILMARNKNNACGIANLASFP 211
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 164 bits (414), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 12/217 (5%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P +DWR K AVTP+K+Q CG CWAFSAV +EGI KI NL Q SEQ+L+DC
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 196 XXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTC-SXXXXXXXXXISNYEEVPSGDE 254
A + + Q GI + YPY+ VQ C S +V ++
Sbjct: 61 YGCNGGYPWS-ALQLVAQ-YGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 255 QALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLI 314
ALL +++ QPVS+ + A +F+ Y+ GIF G CG ++DHAV VG+ G NY LI
Sbjct: 119 GALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILI 173
Query: 315 KNSWGDTWGDAGYMKILRDE----GLCGIGTQSSYPL 347
KNSWG WG+ GY++I R G+CG+ T S YP+
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 122/217 (56%), Gaps = 12/217 (5%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P +DWR K AVTP+K+Q CG CWAFSAV +EGI KI NL + SEQ+L+DC
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 196 XXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTC-SXXXXXXXXXISNYEEVPSGDE 254
A + + Q GI + YPY+ VQ C S +V +E
Sbjct: 61 YGCNGGYPWS-ALQLVAQ-YGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 255 QALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLI 314
ALL +++ QPVS+ + A +F+ Y+ GIF G CG ++DHAV VG+ G NY LI
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILI 173
Query: 315 KNSWGDTWGDAGYMKILRDE----GLCGIGTQSSYPL 347
KNSWG WG+ GY++I R G+CG+ T S YP+
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/216 (43%), Positives = 127/216 (58%), Gaps = 12/216 (5%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+PTS+DWR K AVTP+++Q CG CW FS+VAAVEGI KI L+ LSEQ+L+DC
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRS 60
Query: 196 XXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTC-SXXXXXXXXXISNYEEVPSGDE 254
+ A +Y + N GI YPY+ VQ C + VP +E
Sbjct: 61 YGCRGGFPLY-ALQY-VANSGIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNE 118
Query: 255 QALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLI 314
QAL++ +++QPVSI + A F++Y+ GIF G CGT +DHAV VG+G +Y LI
Sbjct: 119 QALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVAAVGYGN-----DYILI 173
Query: 315 KNSWGDTWGDAGYMKILRD----EGLCGIGTQSSYP 346
KNSWG WG+ GY++I R +G CG+ + S +P
Sbjct: 174 KNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFP 209
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 121/216 (56%), Gaps = 12/216 (5%)
Query: 137 PTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXXX 196
P +DWR K AVTP+K+Q CG CWAFSAV +EGI KI NL Q SEQ+L+DC
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSY 61
Query: 197 XXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTC-SXXXXXXXXXISNYEEVPSGDEQ 255
A + + Q GI + YPY+ VQ C S +V ++
Sbjct: 62 GCNGGYPWS-ALQLVAQ-YGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 256 ALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIK 315
ALL +++ QPVS+ + A +F+ Y+ GIF G CG ++DHAV VG+ G NY LIK
Sbjct: 120 ALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILIK 174
Query: 316 NSWGDTWGDAGYMKILRDE----GLCGIGTQSSYPL 347
NSWG WG+ GY++I R G+CG+ T S YP+
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 160 bits (406), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 121/217 (55%), Gaps = 12/217 (5%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P +DWR K AVTP+K+Q CG WAFSAV +EGI KI NL Q SEQ+L+DC
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 196 XXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTC-SXXXXXXXXXISNYEEVPSGDE 254
A + + Q GI + YPY+ VQ C S +V +E
Sbjct: 61 YGCNGGYPWS-ALQLVAQ-YGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 255 QALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLI 314
ALL +++ QPVS+ + A +F+ Y+ GIF G CG ++DHAV VG+ G NY LI
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILI 173
Query: 315 KNSWGDTWGDAGYMKILRDE----GLCGIGTQSSYPL 347
KNSWG WG+ GY++I R G+CG+ T S YP+
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/216 (39%), Positives = 126/216 (58%), Gaps = 6/216 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
P S+DWR+K VTP+K+Q +CG +AFSA A+EG LI LSEQ LVDCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 196 XXXX-XXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDE 254
M+ AF+Y+ N G+ +E+ YPY+A + +C + ++P E
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDVGFVDIPK-QE 119
Query: 255 QALLKAVS-MQPVSIGIAAYTTEFKSYKEGIF--NGVCGTQLDHAVTIVGFGTTEDGANY 311
+AL+KAV+ + P+S+ I A F YKEGI+ + + L+HA+ +VG+G + Y
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISNNQKY 179
Query: 312 WLIKNSWGDTWGDAGYMKILRD-EGLCGIGTQSSYP 346
WL+KNSWG+ WG GY+K+ +D CGI + +SYP
Sbjct: 180 WLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 215
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 121/217 (55%), Gaps = 12/217 (5%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P +DWR K AVTP+K+Q CG WAFSAV +EGI KI NL Q SEQ+L+DC
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRS 60
Query: 196 XXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTC-SXXXXXXXXXISNYEEVPSGDE 254
A + + Q GI + YPY+ VQ C S +V ++
Sbjct: 61 YGCNGGYPWS-ALQLVAQ-YGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 255 QALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLI 314
ALL +++ QPVS+ + A +F+ Y+ GIF G CG ++DHAV VG+ G NY LI
Sbjct: 119 GALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILI 173
Query: 315 KNSWGDTWGDAGYMKILRDE----GLCGIGTQSSYPL 347
KNSWG WG+ GY++I R G+CG+ T S YP+
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 121/217 (55%), Gaps = 12/217 (5%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
+P +DWR K AVTP+K+Q CG WAFSAV +EGI KI NL + SEQ+L+DC
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRS 60
Query: 196 XXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTC-SXXXXXXXXXISNYEEVPSGDE 254
A + + Q GI + YPY+ VQ C S +V +E
Sbjct: 61 YGCNGGYPWS-ALQLVAQ-YGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 255 QALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLI 314
ALL +++ QPVS+ + A +F+ Y+ GIF G CG ++DHAV VG+ G NY LI
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY-----GPNYILI 173
Query: 315 KNSWGDTWGDAGYMKILRDE----GLCGIGTQSSYPL 347
KNSWG WG+ GY++I R G+CG+ T S YP+
Sbjct: 174 KNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPV 210
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 155 bits (391), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 123/224 (54%), Gaps = 18/224 (8%)
Query: 138 TSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXXXX 197
+ DWR VTP+KDQ+ CG CWAFS++ +VE I LI LSEQ+LVDCS
Sbjct: 20 AAYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCS-FKNY 78
Query: 198 XXXXXTMEKAFEYIIQNQGIATEDEYPYQA-VQGTCSXXXXXXXXXISNYEEVPSGDEQA 256
+ AFE +I+ GI + +YPY + C+ I NY VP +
Sbjct: 79 GCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKE 138
Query: 257 LLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTE---------D 307
L+ + P+SI +A + +F YKEGIF+G CG QL+HAV +VGFG E +
Sbjct: 139 ALRFLG--PISISVAV-SDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGE 195
Query: 308 GANYWLIKNSWGDTWGDAGYMKILRDE-GL---CGIGTQSSYPL 347
Y++IKNSWG WG+ G++ I DE GL CG+GT + PL
Sbjct: 196 KHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 239
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 120/218 (55%), Gaps = 9/218 (4%)
Query: 137 PTSLDWRDK-KAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
P S+DWR K V+P+K+Q CG CW FS A+E I+ ++ L+EQQLVDC+
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 196 XXXXXXXTM-EKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDE 254
+ +AFEYI N+GI ED YPY+ C + + + DE
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVANITMNDE 121
Query: 255 QALLKAVSM-QPVSIGIAAYTTEFKSYKEGIFNGVC----GTQLDHAVTIVGFGTTEDGA 309
+A+++AV++ PVS T +F Y++GI++ +++HAV VG+G E+G
Sbjct: 122 EAMVEAVALYNPVSFAFEV-TNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGE-ENGI 179
Query: 310 NYWLIKNSWGDTWGDAGYMKILRDEGLCGIGTQSSYPL 347
YW++KNSWG WG GY I R + +CG+ +SYP+
Sbjct: 180 PYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPI 217
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 122/224 (54%), Gaps = 18/224 (8%)
Query: 138 TSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXXXX 197
+ DWR VTP+KDQ+ CG WAFS++ +VE I LI LSEQ+LVDCS
Sbjct: 19 AAYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCS-FKNY 77
Query: 198 XXXXXTMEKAFEYIIQNQGIATEDEYPYQA-VQGTCSXXXXXXXXXISNYEEVPSGDEQA 256
+ AFE +I+ GI + +YPY + C+ I NY VP +
Sbjct: 78 GCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKE 137
Query: 257 LLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTE---------D 307
L+ + P+SI +A + +F YKEGIF+G CG QL+HAV +VGFG E +
Sbjct: 138 ALRFLG--PISISVAV-SDDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGE 194
Query: 308 GANYWLIKNSWGDTWGDAGYMKILRDE-GL---CGIGTQSSYPL 347
Y++IKNSWG WG+ G++ I DE GL CG+GT + PL
Sbjct: 195 KHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 238
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 144 bits (363), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 126/227 (55%), Gaps = 18/227 (7%)
Query: 135 DVPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTX 194
D P S DW K +T +K Q +CG WAFSA A+E I+ NL+ LSEQ+L+DC
Sbjct: 1 DAPESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDE 60
Query: 195 XXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNY-------E 247
+ +FE+++++ GIA+E +YPY+A G C I NY E
Sbjct: 61 SEGCYNGWHYQ-SFEWVVKHGGIASEADYPYKARDGKCKANEIQDKVTIDNYGVQILSNE 119
Query: 248 EVPSGDEQALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGV-CGTQ--LDHAVTIVGFGT 304
S E +L V QP+S+ I A +F Y GI++G C + ++H V IVG+G
Sbjct: 120 STESEAESSLQSFVLEQPISVSIDA--KDFHFYSGGIYDGGNCSSPYGINHFVLIVGYG- 176
Query: 305 TEDGANYWLIKNSWGDTWGDAGYMKILRDE----GLCGIGTQSSYPL 347
+EDG +YW+ KNSWG+ WG GY++I R+ G+CG+ +SYP+
Sbjct: 177 SEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPI 223
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 118/223 (52%), Gaps = 18/223 (8%)
Query: 139 SLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXXXXX 198
+ DWR VTP+KDQ CG CWAFS+V +VE I L SEQ+LVDCS
Sbjct: 23 AYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGC 82
Query: 199 XXXXTMEKAFEYIIQNQGIATEDEYPYQA-VQGTCSXXXXXXXXXISNYEEVPSGDEQAL 257
+ AF+ +I G+ ++D+YPY + + TC+ I +Y +P +
Sbjct: 83 YGGY-ITNAFDDMIDLGGLCSQDDYPYVSNLPETCNLKRCNERYTIKSYVSIPDDKFKEA 141
Query: 258 LKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGT----TEDGAN--- 310
L+ + P+SI IAA + +F Y+ G ++G CG +HAV +VG+G ED
Sbjct: 142 LR--YLGPISISIAA-SDDFAFYRGGFYDGECGAAPNHAVILVGYGMKDIYNEDTGRMEK 198
Query: 311 --YWLIKNSWGDTWGDAGYMKILRDEG----LCGIGTQSSYPL 347
Y++IKNSWG WG+ GY+ + DE C IGT++ PL
Sbjct: 199 FYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPL 241
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 137 bits (346), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 115/210 (54%), Gaps = 15/210 (7%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
P ++DWR+K AVTP+KDQ +CG CWAFS + +EG +++G L+ LSEQ LV C T
Sbjct: 1 APAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDT-I 59
Query: 196 XXXXXXXTMEKAFEYIIQNQG--IATEDEYPYQAVQG---TCSXXXXXXXXXISNYEEVP 250
M+ AF +I+ + G + TE YPY + G C I+++ ++P
Sbjct: 60 DFGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLP 119
Query: 251 SGDEQALLKAVSMQ-PVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGA 309
DE A+ ++ P++I + A T F Y GI QLDH V +VG+ D +
Sbjct: 120 Q-DEDAIAAYLAENGPLAIAVDA--TSFMDYNGGILTSCTSEQLDHGVLLVGY---NDAS 173
Query: 310 N--YWLIKNSWGDTWGDAGYMKILRDEGLC 337
N YW+IKNSW + WG+ GY++I + C
Sbjct: 174 NPPYWIIKNSWSNMWGEDGYIRIEKGTNQC 203
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 112/215 (52%), Gaps = 13/215 (6%)
Query: 137 PTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXXX 196
P ++DWR + AVT +KDQ +CG CWAFSA+ VE ++G L L+EQ LV C
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCD-KTD 60
Query: 197 XXXXXXTMEKAFEYIIQ--NQGIATEDEYPYQAVQG---TCSXXXXXXXXXISNYEEVPS 251
M AFE+I+Q N + TED YPY + +G C+ I+ + E+P
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 252 GDEQALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGAN- 310
+ Q PV++ + A + + +Y G+ QLDH V +VG+ DGA
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDA--SSWMTYTGGVMTSCVSEQLDHGVLLVGY---NDGAAV 175
Query: 311 -YWLIKNSWGDTWGDAGYMKILRDEGLCGIGTQSS 344
YW+IKNSW WG+ GY++I + C + ++S
Sbjct: 176 PYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEAS 210
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 112/215 (52%), Gaps = 13/215 (6%)
Query: 137 PTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXXX 196
P ++DWR + AVT +KDQ +CG CWAFSA+ VE ++G L L+EQ LV C
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCD-KTD 60
Query: 197 XXXXXXTMEKAFEYIIQ--NQGIATEDEYPYQAVQG---TCSXXXXXXXXXISNYEEVPS 251
M AFE+I+Q N + TED YPY + +G C+ I+ + E+P
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 252 GDEQALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGAN- 310
+ Q PV++ + A + + +Y G+ QLDH V +VG+ DGA
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDA--SSWMTYTGGVMTSCVSEQLDHGVLLVGY---NDGAAV 175
Query: 311 -YWLIKNSWGDTWGDAGYMKILRDEGLCGIGTQSS 344
YW+IKNSW WG+ GY++I + C + ++S
Sbjct: 176 PYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEAS 210
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 131 bits (329), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 110/213 (51%), Gaps = 9/213 (4%)
Query: 137 PTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXXX 196
P ++DWR + AVT +KDQ +CG CWAFSA+ VE ++G L LSEQ LV C
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCD-KTD 60
Query: 197 XXXXXXTMEKAFEYIIQ--NQGIATEDEYPYQAVQG---TCSXXXXXXXXXISNYEEVPS 251
M AFE+I+Q N + TED YPY + +G C+ I+ + E+P
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 252 GDEQALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANY 311
+ Q PV++ + A + + +Y G+ QLDH V +VG+ + Y
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDA--SSWMTYTGGVMTSCVSEQLDHGVLLVGYNDSA-AVPY 177
Query: 312 WLIKNSWGDTWGDAGYMKILRDEGLCGIGTQSS 344
W+IKNSW WG+ GY++I + C + ++S
Sbjct: 178 WIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEAS 210
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 109/213 (51%), Gaps = 9/213 (4%)
Query: 137 PTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXXX 196
P ++DWR + AVT +KDQ +CG CWAFSA+ VE ++G L LSEQ LV C
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCD-KTD 60
Query: 197 XXXXXXTMEKAFEYIIQ--NQGIATEDEYPYQAVQG---TCSXXXXXXXXXISNYEEVPS 251
M AFE+I+Q N + TED YPY + +G C+ I+ + E+P
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 252 GDEQALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANY 311
+ Q PV++ + A + + +Y G+ LDH V +VG+ + Y
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDA--SSWMTYTGGVMTSCVSEALDHGVLLVGYNDSA-AVPY 177
Query: 312 WLIKNSWGDTWGDAGYMKILRDEGLCGIGTQSS 344
W+IKNSW WG+ GY++I + C + ++S
Sbjct: 178 WIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEAS 210
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 100/172 (58%), Gaps = 5/172 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCS-TX 194
P S+DWR+K VTP+K+Q +CG CWAFSA A+EG LI LSEQ LVDCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 195 XXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDE 254
M+ AF+Y+ N G+ +E+ YPY+A + +C + + ++P E
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QE 119
Query: 255 QALLKAVS-MQPVSIGIAAYTTEFKSYKEGI-FNGVCGTQ-LDHAVTIVGFG 303
+AL+KAV+ + P+S+ I A F YKEGI F C ++ +DH V +VG+G
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 99/172 (57%), Gaps = 5/172 (2%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCS-TX 194
P S+DWR+K VTP+K+Q +CG WAFSA A+EG LI LSEQ LVDCS
Sbjct: 1 APRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 60
Query: 195 XXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDE 254
M+ AF+Y+ N G+ +E+ YPY+A + +C + + ++P E
Sbjct: 61 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QE 119
Query: 255 QALLKAVS-MQPVSIGIAAYTTEFKSYKEGI-FNGVCGTQ-LDHAVTIVGFG 303
+AL+KAV+ + P+S+ I A F YKEGI F C ++ +DH V +VG+G
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 110/204 (53%), Gaps = 14/204 (6%)
Query: 131 LSMTDVPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVD 190
++ +VP+ LD R + VTPI+ Q CG CWAFS VAA E + LSEQ+LVD
Sbjct: 6 INSVNVPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVD 65
Query: 191 CSTXXXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVP 250
C++ T+ + EYI QN G+ E YPY A + C ISNY ++
Sbjct: 66 CAS--QHGCHGDTIPRGIEYIQQN-GVVEERSYPYVAREQRCR-RPNSQHYGISNYCQIY 121
Query: 251 SGDEQALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLD-------HAVTIVGFG 303
D + + +A++ +I + + ++++ ++G Q D HAV IVG+G
Sbjct: 122 PPDVKQIREALTQTHTAIAVIIGIKDLRAFQH--YDGRTIIQHDNGYQPNYHAVNIVGYG 179
Query: 304 TTEDGANYWLIKNSWGDTWGDAGY 327
+T+ G +YW+++NSW TWGD+GY
Sbjct: 180 STQ-GDDYWIVRNSWDTTWGDSGY 202
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 104/213 (48%), Gaps = 8/213 (3%)
Query: 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXX 195
P DWR K AVT +KDQ CG CWAFS VEG ++ L+ LSEQ+L+DC
Sbjct: 1 APPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMD 60
Query: 196 XXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDEQ 255
A+ I G+ TED+Y YQ +C I + E+ +++
Sbjct: 61 KACMGGLP-SNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVELSQNEQK 119
Query: 256 ALLKAVSMQPVSIGIAAYTTEFKSYKEGI---FNGVCGTQL-DHAVTIVGFGTTEDGANY 311
P+S+ I A+ +F Y+ GI +C L DHAV +VG+G D +
Sbjct: 120 LAAWLAKRGPISVAINAFGMQF--YRHGISRPLRPLCSPWLIDHAVLLVGYGQRSD-VPF 176
Query: 312 WLIKNSWGDTWGDAGYMKILRDEGLCGIGTQSS 344
W IKNSWG WG+ GY + R G CG+ T +S
Sbjct: 177 WAIKNSWGTDWGEKGYYYLHRGSGACGVNTMAS 209
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 133/294 (45%), Gaps = 23/294 (7%)
Query: 42 SVVEMHEKWMAQHGRSYKDELEKEMRFKIFKENLEYIEKANKEGNRTYKLGTNRFSDLTN 101
S ++ E++ +SY ++E K F E+++Y++ N SDL+
Sbjct: 3 SSIKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG--------AINHLSDLSL 54
Query: 102 DEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMT-DVPTSLDWRDKKAVTPIKDQQECGCC 160
DEF+ + + + S+ + P +D R + VTPI+ Q CG
Sbjct: 55 DEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSA 114
Query: 161 WAFSAVAAVEGITKISGANLIQLSEQQLVDCSTXXXXXXXXXTMEKAFEYIIQNQGIATE 220
WAFS VAA E + L+EQ+LVDC++ T+ + EY IQ+ G+ E
Sbjct: 115 WAFSGVAATESAYLAYRDQSLDLAEQELVDCAS--QHGCHGDTIPRGIEY-IQHNGVVQE 171
Query: 221 DEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDEQALLKAVSMQPVSIGIAAYTTEFKSY 280
Y Y A + +C ISNY ++ + + +A++ +I + + ++
Sbjct: 172 SYYRYVAREQSCR-RPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAF 230
Query: 281 KEGIFNGVCGTQLD-------HAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGY 327
+ ++G Q D HAV IVG+ + G +YW+++NSW WGD GY
Sbjct: 231 RH--YDGRTIIQRDNGYQPNYHAVNIVGYSNAQ-GVDYWIVRNSWDTNWGDNGY 281
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 99/200 (49%), Gaps = 14/200 (7%)
Query: 135 DVPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTX 194
+ P +D R + VTPI+ Q CG CWAFS VAA E + L+EQ+LVDC++
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCAS- 67
Query: 195 XXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDE 254
T+ + EY IQ+ G+ E Y Y A + +C ISNY ++ +
Sbjct: 68 -QHGCHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSCR-RPNAQRFGISNYCQIYPPNA 124
Query: 255 QALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLD-------HAVTIVGFGTTED 307
+ +A++ +I + + +++ ++G Q D HAV IVG+ +
Sbjct: 125 NKIREALAQTHSAIAVIIGIKDLDAFRH--YDGRTIIQRDNGYQPNYHAVNIVGYSNAQ- 181
Query: 308 GANYWLIKNSWGDTWGDAGY 327
G +YW+++NSW WGD GY
Sbjct: 182 GVDYWIVRNSWDTNWGDNGY 201
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 99/200 (49%), Gaps = 14/200 (7%)
Query: 135 DVPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTX 194
+ P +D R + VTPI+ Q CG CWAFS VAA E + L+EQ+LVDC++
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCAS- 67
Query: 195 XXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDE 254
T+ + EY IQ+ G+ E Y Y A + +C ISNY ++ +
Sbjct: 68 -QHGCHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSCR-RPNAQRFGISNYCQIYPPNV 124
Query: 255 QALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLD-------HAVTIVGFGTTED 307
+ +A++ +I + + +++ ++G Q D HAV IVG+ +
Sbjct: 125 NKIREALAQTHSAIAVIIGIKDLDAFRH--YDGRTIIQRDNGYQPNYHAVNIVGYSNAQ- 181
Query: 308 GANYWLIKNSWGDTWGDAGY 327
G +YW+++NSW WGD GY
Sbjct: 182 GVDYWIVRNSWDTNWGDNGY 201
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 110/228 (48%), Gaps = 32/228 (14%)
Query: 136 VPTSLDWRDKKA---VTPIKDQQECGCCWAFSAVAAVEGITKI--SGANLIQLSEQQLVD 190
+PTS DWR+ V+P+++Q CG C++F+++ +E +I + + LS Q++V
Sbjct: 207 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 266
Query: 191 CSTXXXXXXXXXTMEKAFEYII-----QNQGIATEDEYPYQAVQGTCSXXXXXXXXXISN 245
CS E F Y+I Q+ G+ E +PY C S
Sbjct: 267 CSQYAQG------CEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSE 320
Query: 246 YEEVPS---GDEQALLKA--VSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQ-------- 292
Y V G +AL+K V P+++ Y +F YK+GI++ G +
Sbjct: 321 YHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYD-DFLHYKKGIYHHT-GLRDPFNPFEL 378
Query: 293 LDHAVTIVGFGT-TEDGANYWLIKNSWGDTWGDAGYMKILRDEGLCGI 339
+HAV +VG+GT + G +YW++KNSWG WG+ GY +I R C I
Sbjct: 379 TNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAI 426
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 14/200 (7%)
Query: 135 DVPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTX 194
+ P +D R + VTPI+ Q CG WAFS VAA E + L+EQ+LVDC++
Sbjct: 9 NAPAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCAS- 67
Query: 195 XXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSXXXXXXXXXISNYEEVPSGDE 254
T+ + EY IQ+ G+ E Y Y A + +C ISNY ++ +
Sbjct: 68 -QHGCHGDTIPRGIEY-IQHNGVVQESYYRYVAREQSCR-RPNAQRFGISNYCQIYPPNA 124
Query: 255 QALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLD-------HAVTIVGFGTTED 307
+ +A++ +I + + +++ ++G Q D HAV IVG+ +
Sbjct: 125 NKIREALAQTHSAIAVIIGIKDLDAFRH--YDGRTIIQRDNGYQPNYHAVNIVGYSNAQ- 181
Query: 308 GANYWLIKNSWGDTWGDAGY 327
G +YW+++NSW WGD GY
Sbjct: 182 GVDYWIVRNSWDTNWGDNGY 201
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 30/230 (13%)
Query: 133 MTDVPTSLDWRDKKA---VTPIKDQQECGCCWAFSAVAAVEGITKI--SGANLIQLSEQQ 187
+ +P S DWR+ + V+P+++Q+ CG C++F+++ +E +I + + LS Q+
Sbjct: 203 ILSLPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQE 262
Query: 188 LVDCSTXXXXXXXXXTMEKAFEYII-----QNQGIATEDEYPYQAVQGTCSXXXXXXXXX 242
+V CS + F Y+I Q+ G+ E+ +PY A C
Sbjct: 263 VVSCSPYAQG------CDGGFPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKENCLRYY 316
Query: 243 ISNYEEVPSGD---EQALLKA--VSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQ----- 292
S Y V +AL+K V P+++ + +F Y GI++ +
Sbjct: 317 SSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHD-DFLHYHSGIYHHTGLSDPFNPF 375
Query: 293 --LDHAVTIVGFGTTE-DGANYWLIKNSWGDTWGDAGYMKILRDEGLCGI 339
+HAV +VG+G G +YW++KNSWG WG++GY +I R C I
Sbjct: 376 ELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAI 425
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 107/246 (43%), Gaps = 44/246 (17%)
Query: 135 DVPTSLDWRDK----KAVTPIKDQQECGCCWAFSAVAAVEGITKI--SGANLIQLSEQQL 188
++P+S D R K K++ I+DQ CG CWAF AV A+ + I G ++LS L
Sbjct: 2 EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDL 61
Query: 189 VDCSTXXXXXXXXXTMEKAFEYIIQNQGIATE---------DEYPYQAVQ---------- 229
+ C + A++Y ++ +GI T + YP+ +
Sbjct: 62 LSCCESCGLGCEGGILGPAWDYWVK-EGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPC 120
Query: 230 GTCSXXXXXXXXXISNYEEVP--------------SGDEQALLKAV-SMQPVSIGIAAYT 274
G+ + P DE+A+ K + PV G Y
Sbjct: 121 GSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYE 180
Query: 275 TEFKSYKEGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKILRD 333
+F +YK GI+ + G L HA+ I+G+G E+ A YWLI NSW + WG+ GY +I+R
Sbjct: 181 -DFLNYKSGIYKHITGETLGGHAIRIIGWGV-ENKAPYWLIANSWNEDWGENGYFRIVRG 238
Query: 334 EGLCGI 339
C I
Sbjct: 239 RDECSI 244
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 106/229 (46%), Gaps = 31/229 (13%)
Query: 128 YQNLSMTDVPTSLDWRDKKAV---TPIKDQ---QECGCCWAFSAVAAVE---GITKISGA 178
++ LS D+P S DWR+ V + ++Q Q CG CWA ++ +A+ I +
Sbjct: 28 HEYLSPADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAW 87
Query: 179 NLIQLSEQQLVDCSTXXXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQ--------- 229
LS Q ++DC ++Y Q GI E YQA
Sbjct: 88 PSTLLSVQNVIDCGNAGSCEGGNDL--SVWDYAHQ-HGIPDETCNNYQAKDQECDKFNQC 144
Query: 230 GTCS------XXXXXXXXXISNYEEVPSGDEQALLKAVSMQPVSIGIAAYTTEFKSYKEG 283
GTC+ + +Y + SG E+ + + + P+S GI A T +Y G
Sbjct: 145 GTCNEFKECHAIRNYTLWRVGDYGSL-SGREKMMAEIYANGPISCGIMA-TERLANYTGG 202
Query: 284 IFNGVCGTQ-LDHAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKIL 331
I+ T ++H V++ G+G + DG YW+++NSWG+ WG+ G+++I+
Sbjct: 203 IYAEYQDTTYINHVVSVAGWGIS-DGTEYWIVRNSWGEPWGERGWLRIV 250
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 36/246 (14%)
Query: 136 VPTSLD----WRDKKAVTPIKDQQECGCCWAFSAVAAV-EGITKISGANLIQLSEQQLVD 190
+P+S D W + + I DQ CG CWA +A +A+ + + G + +S L+
Sbjct: 94 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 153
Query: 191 CSTXXXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGT------------------- 231
C + ++A+ Y + G+ ++ PY +
Sbjct: 154 CCSDCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDT 212
Query: 232 --CSXXXXXXXXXISNYEEVPS----GDEQALLKAVSMQPVSIGIAAYTTEFKSYKEGIF 285
C+ + NY S G++ + + P + Y +F +Y G++
Sbjct: 213 PKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYE-DFIAYNSGVY 271
Query: 286 NGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKILRDEGLCGI--GTQ 342
+ V G L HAV +VG+GT+ +G YW I NSW WG GY I R CGI G
Sbjct: 272 HHVSGQYLGGHAVRLVGWGTS-NGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGS 330
Query: 343 SSYPLA 348
+ PLA
Sbjct: 331 AGIPLA 336
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 101/246 (41%), Gaps = 36/246 (14%)
Query: 136 VPTSLD----WRDKKAVTPIKDQQECGCCWAFSAVAAV-EGITKISGANLIQLSEQQLVD 190
+P+S D W + + I DQ CG CWA +A +A+ + + G + +S L+
Sbjct: 71 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 130
Query: 191 CSTXXXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGT------------------- 231
C + ++A+ Y + G+ ++ PY +
Sbjct: 131 CCSDCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDT 189
Query: 232 --CSXXXXXXXXXISNYEEVPS----GDEQALLKAVSMQPVSIGIAAYTTEFKSYKEGIF 285
C+ + NY S G++ + + P + Y +F +Y G++
Sbjct: 190 PKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYE-DFIAYNSGVY 248
Query: 286 NGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKILRDEGLCGI--GTQ 342
+ V G L HAV +VG+GT+ +G YW I NSW WG GY I R CGI G
Sbjct: 249 HHVSGQYLGGHAVRLVGWGTS-NGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGS 307
Query: 343 SSYPLA 348
+ PLA
Sbjct: 308 AGIPLA 313
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 100/246 (40%), Gaps = 36/246 (14%)
Query: 136 VPTSLD----WRDKKAVTPIKDQQECGCCWAFSAVAAV-EGITKISGANLIQLSEQQLVD 190
+P+S D W + + I DQ CG CWA +A +A+ + + G + +S L+
Sbjct: 72 LPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLA 131
Query: 191 CSTXXXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQGT------------------- 231
C + ++A+ Y + G+ ++ PY +
Sbjct: 132 CCSDCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDT 190
Query: 232 --CSXXXXXXXXXISNYEEVPS----GDEQALLKAVSMQPVSIGIAAYTTEFKSYKEGIF 285
C + NY S G++ + + P + Y +F +Y G++
Sbjct: 191 PKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVYE-DFIAYNSGVY 249
Query: 286 NGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKILRDEGLCGI--GTQ 342
+ V G L HAV +VG+GT+ +G YW I NSW WG GY I R CGI G
Sbjct: 250 HHVSGQYLGGHAVRLVGWGTS-NGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGS 308
Query: 343 SSYPLA 348
+ PLA
Sbjct: 309 AGIPLA 314
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 125/305 (40%), Gaps = 53/305 (17%)
Query: 76 EYIEKANKEGNRTYKLGTNRFSDLTNDEFRALYTGYKMPSPSHRXXXXXXFKYQNLSMTD 135
E + NK N T++ G N ++ + R T P P R K
Sbjct: 13 ELVNYVNKR-NTTWQAGHNFYNVDMSYLKRLCGTFLGGPKPPQRVMFTEDLK-------- 63
Query: 136 VPTSLDWRDKKAVTP----IKDQQECGCCWAFSAV-AAVEGITKISGANL-IQLSEQQLV 189
+P S D R++ P I+DQ CG CWAF AV A + I + A++ +++S + L+
Sbjct: 64 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 123
Query: 190 D-CSTXXXXXXXXXTMEKAFEYIIQNQGIATEDEY-------PY------QAVQGT---- 231
C + +A+ + + +G+ + Y PY V G+
Sbjct: 124 TCCGSMCGDGCNGGYPAEAWNFWTR-KGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 182
Query: 232 ------------CSXXXXXXXXXISNYE----EVPSGDEQALLKAVSMQPVSIGIAAYTT 275
C +Y V + ++ + + PV + Y+
Sbjct: 183 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYS- 241
Query: 276 EFKSYKEGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKILRDE 334
+F YK G++ V G + HA+ I+G+G E+G YWL+ NSW WGD G+ KILR +
Sbjct: 242 DFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWGDNGFFKILRGQ 300
Query: 335 GLCGI 339
CGI
Sbjct: 301 DHCGI 305
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 100/222 (45%), Gaps = 33/222 (14%)
Query: 136 VPTSLDWRDKKAV---TPIKDQ---QECGCCWAFSAVAAVE---GITKISGANLIQLSEQ 186
+P S DWR+ V + ++Q Q CG CWA ++ +A+ I + LS Q
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 187 QLVDCSTXXXXXXXXXTMEKAFEYIIQNQGIATEDEYPYQAVQ---------GTCSXXXX 237
++DC ++Y Q GI E YQA GTC+
Sbjct: 61 NVIDCGNAGSCEGGNDL--SVWDYAHQ-HGIPDETCNNYQAKDQECDKFNQCGTCNEFKE 117
Query: 238 XXXXXISNYEEVPSGD-------EQALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCG 290
I NY GD E+ + + + P+S GI A T +Y GI+
Sbjct: 118 CHA--IRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMA-TERLANYTGGIYAEYQD 174
Query: 291 TQ-LDHAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKIL 331
T ++H V++ G+G + DG YW+++NSWG+ WG+ G+++I+
Sbjct: 175 TTYINHVVSVAGWGIS-DGTEYWIVRNSWGEPWGERGWLRIV 215
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 99/245 (40%), Gaps = 42/245 (17%)
Query: 135 DVPTSLD----WRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKI--SGANLIQLSEQQL 188
++P S D W + + I+DQ CG CWAF AV A+ I +G +++S + L
Sbjct: 6 NLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 65
Query: 189 VDCSTXXXXXXXXXTMEKAFEYIIQNQGIATEDEY-------PY------QAVQG----- 230
+ C +G+ + Y PY V G
Sbjct: 66 LTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPC 125
Query: 231 -----TCSXXXXXXXXXISNYEE----------VPSGDEQALLKAVSMQPVSIGIAAYTT 275
T ++Y+E V +++ + + PV ++
Sbjct: 126 TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFS- 184
Query: 276 EFKSYKEGIFNGVCGTQL-DHAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKILRDE 334
+F +YK G++ G + HA+ I+G+G E+G YWL+ NSW WGD G+ KILR E
Sbjct: 185 DFLTYKSGVYKHEAGDVMGGHAIRILGWG-IENGVPYWLVANSWNADWGDNGFFKILRGE 243
Query: 335 GLCGI 339
CGI
Sbjct: 244 NHCGI 248
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 98/244 (40%), Gaps = 42/244 (17%)
Query: 136 VPTSLD----WRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKI--SGANLIQLSEQQLV 189
+P S D W + + I+DQ CG CWAF AV A+ I +G +++S + L+
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 190 DCSTXXXXXXXXXTMEKAFEYIIQNQGIATEDEY-------PY------QAVQG------ 230
C +G+ + Y PY V G
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 120
Query: 231 ----TCSXXXXXXXXXISNYEE----------VPSGDEQALLKAVSMQPVSIGIAAYTTE 276
T ++Y+E V +++ + + PV ++ +
Sbjct: 121 GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFS-D 179
Query: 277 FKSYKEGIFNGVCGTQL-DHAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKILRDEG 335
F +YK G++ G + HA+ I+G+G E+G YWL+ NSW WGD G+ KILR E
Sbjct: 180 FLTYKSGVYKHEAGDVMGGHAIRILGWG-IENGVPYWLVANSWNADWGDNGFFKILRGEN 238
Query: 336 LCGI 339
CGI
Sbjct: 239 HCGI 242
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 98/245 (40%), Gaps = 42/245 (17%)
Query: 135 DVPTSLD----WRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKI--SGANLIQLSEQQL 188
++P S D W + + I+DQ CG WAF AV A+ I +G +++S + L
Sbjct: 62 NLPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDL 121
Query: 189 VDCSTXXXXXXXXXTMEKAFEYIIQNQGIATEDEY-------PY------QAVQG----- 230
+ C +G+ + Y PY V G
Sbjct: 122 LTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPC 181
Query: 231 -----TCSXXXXXXXXXISNYEE----------VPSGDEQALLKAVSMQPVSIGIAAYTT 275
T ++Y+E V +++ + + PV ++
Sbjct: 182 TGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVFS- 240
Query: 276 EFKSYKEGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKILRDE 334
+F +YK G++ G + HA+ I+G+G E+G YWL+ NSW WGD G+ KILR E
Sbjct: 241 DFLTYKSGVYKHEAGDVMGGHAIRILGWGI-ENGVPYWLVANSWNADWGDNGFFKILRGE 299
Query: 335 GLCGI 339
CGI
Sbjct: 300 NHCGI 304
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 265 PVSIGIAAYTTEFKSYKEGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGDTWG 323
PV + Y+ +F YK G++ V G + HA+ I+G+G E+G YWL+ NSW WG
Sbjct: 175 PVEGAFSVYS-DFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWG 232
Query: 324 DAGYMKILRDEGLCGI 339
D G+ KILR + CGI
Sbjct: 233 DNGFFKILRGQDHCGI 248
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 136 VPTSLDWRDKKAVTP----IKDQQECGCCWAFSAVAAV-EGITKISGANL-IQLSEQQLV 189
+P S D R++ P I+DQ CG WAF AV A+ + I + A++ +++S + L+
Sbjct: 7 LPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 66
Query: 190 DC 191
C
Sbjct: 67 TC 68
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 265 PVSIGIAAYTTEFKSYKEGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGDTWG 323
PV + Y+ +F YK G++ V G + HA+ I+G+G E+G YWL+ NSW WG
Sbjct: 171 PVEGAFSVYS-DFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWG 228
Query: 324 DAGYMKILRDEGLCGI 339
D G+ KILR + CGI
Sbjct: 229 DNGFFKILRGQDHCGI 244
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 136 VPTSLDWRDKKAVTP----IKDQQECGCCWAFSAVAAV-EGITKISGANL-IQLSEQQLV 189
+P S D R++ P I+DQ CG CWAF AV A+ + I + A++ +++S + L+
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 190 DC 191
C
Sbjct: 63 TC 64
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 265 PVSIGIAAYTTEFKSYKEGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGDTWG 323
PV + Y+ +F YK G++ V G + HA+ I+G+G E+G YWL+ NSW WG
Sbjct: 170 PVEGAFSVYS-DFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWG 227
Query: 324 DAGYMKILRDEGLCGI 339
D G+ KILR + CGI
Sbjct: 228 DNGFFKILRGQDHCGI 243
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 136 VPTSLDWRDKKAVTP----IKDQQECGCCWAFSAVAAV-EGITKISGANL-IQLSEQQLV 189
+P S D R++ P I+DQ CG CWAF AV A+ + I + A++ +++S + L+
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 190 DC 191
C
Sbjct: 62 TC 63
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 265 PVSIGIAAYTTEFKSYKEGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGDTWG 323
PV + Y+ +F YK G++ V G + HA+ I+G+G E+G YWL+ NSW WG
Sbjct: 169 PVEGAFSVYS-DFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWG 226
Query: 324 DAGYMKILRDEGLCGI 339
D G+ KILR + CGI
Sbjct: 227 DNGFFKILRGQDHCGI 242
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 136 VPTSLDWRDKKAVTP----IKDQQECGCCWAFSAVAAV-EGITKISGANL-IQLSEQQLV 189
+P S D R++ P I+DQ CG CWAF AV A+ + I + A++ +++S + L+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 190 DC 191
C
Sbjct: 61 TC 62
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 249 VPSGDEQALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLD-HAVTIVGFGTTED 307
V + +++ + + PV + Y+ +F YK G++ V G + HA+ I+G+G E+
Sbjct: 153 VANNEKEIMAEIYKNGPVEGAFSVYS-DFLLYKSGVYQHVSGEIMGGHAIRILGWGV-EN 210
Query: 308 GANYWLIKNSWGDTWGDAGYMKILRDEGLCGI 339
G YWL+ NSW WGD G+ KILR + CGI
Sbjct: 211 GTPYWLVANSWNTDWGDNGFFKILRGQDHCGI 242
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 136 VPTSLD----WRDKKAVTPIKDQQECGCCWAFSAVAAV 169
+P S D W + + I+DQ CG CWAF AV A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 249 VPSGDEQALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLD-HAVTIVGFGTTED 307
V + +++ + + PV + Y+ +F YK G++ V G + HA+ I+G+G E+
Sbjct: 153 VANNEKEIMAEIYKNGPVEGAFSVYS-DFLLYKSGVYQHVSGEIMGGHAIRILGWGV-EN 210
Query: 308 GANYWLIKNSWGDTWGDAGYMKILRDEGLCGI 339
G YWL+ NSW WGD G+ KILR + CGI
Sbjct: 211 GTPYWLVGNSWNTDWGDNGFFKILRGQDHCGI 242
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 136 VPTSLD----WRDKKAVTPIKDQQECGCCWAFSAVAAV 169
+P S D W + + I+DQ CG CWAF AV A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 265 PVSIGIAAYTTEFKSYKEGIFNGVCGTQLD-HAVTIVGFGTTEDGANYWLIKNSWGDTWG 323
PV + Y+ +F YK G++ V G + HA+ I+G+G E+G YWL+ NSW WG
Sbjct: 120 PVEGAFSVYS-DFLLYKSGVYQHVTGEMMGGHAIRILGWGV-ENGTPYWLVANSWNTDWG 177
Query: 324 DAGYMKILRDEGLCGI 339
D G+ KILR + CGI
Sbjct: 178 DNGFFKILRGQDHCGI 193
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 249 VPSGDEQALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLD-HAVTIVGFGTTED 307
V + +++ + + PV + Y+ +F YK G++ V G + HA+ I+G+G E+
Sbjct: 105 VANNEKEIMAEIYKNGPVEGAFSVYS-DFLLYKSGVYQHVSGEIMGGHAIRILGWGV-EN 162
Query: 308 GANYWLIKNSWGDTWGDAGYMKILRDEGLCGI 339
G YWL+ NSW WGD G+ KILR + CGI
Sbjct: 163 GTPYWLVGNSWNTDWGDNGFFKILRGQDHCGI 194
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 136 VPTSLDWRDKKA---VTPIKDQQECGCCWAFSAVAAVEGITKI--SGANLIQLSEQQLVD 190
+PTS DWR+ V+P+++Q CG C++F+++ +E +I + + LS Q++V
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 191 CSTXXXXXXXXXTMEKAFEYII-----QNQGIATEDEYPYQAVQGTCSXXXXXXXXXISN 245
CS E F Y+I Q+ G+ E +PY C S
Sbjct: 61 CSQ------YAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSE 114
Query: 246 YEEVP---SGDEQALLK--AVSMQPVSIGIAAYTTEFKSYKEGIFN 286
Y V G +AL+K V P+++ Y +F YK+GI++
Sbjct: 115 YHYVGGFYGGCNEALMKLELVHHGPMAVAFEVY-DDFLHYKKGIYH 159
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 58.9 bits (141), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 50 WMAQHGRSYKDELEKEMRFKIFKENLEYIEKANKEGNRTYKLGTNRFSDLTNDEFRALYT 109
+ A + +SY E EK+ R+ IFK NL YI N++G +Y L N F DL+ DEFR Y
Sbjct: 28 FQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQG-YSYSLKMNHFGDLSRDEFRRKYL 86
Query: 110 GYK 112
G+K
Sbjct: 87 GFK 89
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 294 DHAVTIVGFGT-TEDGANYWLIKNSWGDTWGDAGYMKILRDEGLCGI 339
+HAV +VG+GT + G +YW++KNSWG WG+ GY +I R C I
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAI 56
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 86/218 (39%), Gaps = 41/218 (18%)
Query: 151 IKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDC-STXXXXXXXXXTMEKAFE 209
++DQ C W F++ +E I + G ++S + +C + F
Sbjct: 25 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 84
Query: 210 YIIQNQG-IATEDEYPYQAVQ--GTCSXXXXXXXXXISNYEEVPSGDE------------ 254
II++ G + E YPY V+ C N + + + +E
Sbjct: 85 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 144
Query: 255 ---------QALLKAVSMQPVSIG-IAAYTT-------EFKSYKEGIFNGVCGTQL-DHA 296
A +K + + ++ G + AY EF K +CG DHA
Sbjct: 145 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKK---VKNLCGDDTADHA 201
Query: 297 VTIVGFG----TTEDGANYWLIKNSWGDTWGDAGYMKI 330
V IVG+G + + +YW+++NSWG WGD GY K+
Sbjct: 202 VNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 239
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 86/218 (39%), Gaps = 41/218 (18%)
Query: 151 IKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDC-STXXXXXXXXXTMEKAFE 209
++DQ C W F++ +E I + G ++S + +C + F
Sbjct: 24 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 83
Query: 210 YIIQNQG-IATEDEYPYQAVQ--GTCSXXXXXXXXXISNYEEVPSGDE------------ 254
II++ G + E YPY V+ C N + + + +E
Sbjct: 84 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 143
Query: 255 ---------QALLKAVSMQPVSIG-IAAYTT-------EFKSYKEGIFNGVCGTQL-DHA 296
A +K + + ++ G + AY EF K +CG DHA
Sbjct: 144 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKK---VQNLCGDDTADHA 200
Query: 297 VTIVGFG----TTEDGANYWLIKNSWGDTWGDAGYMKI 330
V IVG+G + + +YW+++NSWG WGD GY K+
Sbjct: 201 VNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 238
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 50.4 bits (119), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 311 YWLIKNSWGDTWGDAGYMKILRD-EGLCGIGTQSSYP 346
YWL+KNSWG+ WG GY+K+ +D CGI + +SYP
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 40
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
Antigent-2(Ctla Protein), Crammer At Ph 6.0
Length = 80
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 8/73 (10%)
Query: 48 EKWM---AQHGRSYKDELEKEMRFKIFKENLEYIEKANKE---GNRTYKLGTNRFSDLTN 101
E+W+ ++ ++Y+ E E MR +I+ E+ IE+ N++ G T+K+G N +DLT
Sbjct: 8 EEWVEYKSKFDKNYEAE-EDLMRRRIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTP 66
Query: 102 DEFRALYTGYKMP 114
+EF A +G K+P
Sbjct: 67 EEF-AQRSGKKVP 78
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 136 VPTSLDWRDKKAVTP----IKDQQECGCCWAFSAVAAV 169
+P S D R++ P I+DQ CG CWAF AV A+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 37.4 bits (85), Expect = 0.014, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 136 VPTSLD----WRDKKAVTPIKDQQECGCCWAFSAVAAV 169
+P S D W + + I+DQ CG CWAF AV A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1OBA|A Chain A, Multimodular Pneumococcal Cell Wall Endolysin From Phage
Cp-1 Complexed With Choline
Length = 339
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 243 ISNYEEVPSGDEQALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGV----CGTQLDHAVT 298
+ +YE+ PSGD QA A I A Y + SYK + V Q +++
Sbjct: 90 VLDYEDDPSGDAQANTNACLRFMQMIADAGYKPIYYSYKPFTHDNVDYQQILAQFPNSLW 149
Query: 299 IVGFGTTEDGANY 311
I G+G + AN+
Sbjct: 150 IAGYGLNDGTANF 162
>pdb|1H09|A Chain A, Multimodular Pneumococcal Cell Wall Endolysin From Phage
Cp-1
Length = 338
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 243 ISNYEEVPSGDEQALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGV----CGTQLDHAVT 298
+ +YE+ PSGD QA A I A Y + SYK + V Q +++
Sbjct: 89 VLDYEDDPSGDAQANTNACLRFMQMIADAGYKPIYYSYKPFTHDNVDYQQILAQFPNSLW 148
Query: 299 IVGFGTTEDGANY 311
I G+G + AN+
Sbjct: 149 IAGYGLNDGTANF 161
>pdb|2IXU|A Chain A, Crystal Structure Of The Modular Cpl-1 Endolysin Complexed
With A Peptidoglycan Analogue (Wild-Type Endolysin)
Length = 339
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 243 ISNYEEVPSGDEQALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGV----CGTQLDHAVT 298
+ +YE+ PSGD QA A I A Y + SYK + V Q +++
Sbjct: 90 VLDYEDDPSGDAQANTNACLRFMQMIADAGYKPIYYSYKPFTHDNVDYQQILAQFPNSLW 149
Query: 299 IVGFGTTEDGANY 311
I G+G + AN+
Sbjct: 150 IAGYGLNDGTANF 162
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 295 HAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYM 328
HAV VG+ +D ++ I+NSWG+ G+ GY
Sbjct: 237 HAVLCVGY---DDEIRHFRIRNSWGNNVGEDGYF 267
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 291 TQLDHAVTIVGFGTTEDGANYWLIKNSWG 319
T DH I G ++G Y+ +KNSWG
Sbjct: 314 TTDDHGXQIYGIAKDQEGNEYYXVKNSWG 342
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 148 VTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSE 185
+T +K+Q G CW +S+ + +E G LSE
Sbjct: 22 ITSVKNQNRAGTCWCYSSYSFLESELLRXGKGEYDLSE 59
>pdb|2IXV|A Chain A, Crystal Structure Of The Modular Cpl-1 Endolysin Complexed
With A Peptidoglycan Analogue (E94q Mutant)
pdb|2J8G|A Chain A, Crystal Structure Of The Modular Cpl-1 Endolysin Complexed
With A Peptidoglycan Analogue (E94q Mutant In Complex
With A Tetrasaccharide-Pentapeptide)
pdb|2J8F|A Chain A, Crystal Structure Of The Modular Cpl-1 Endolysin Complexed
With A Peptidoglycan Analogue (e94q Mutant In Complex
With A Disaccharide-pentapeptide)
Length = 339
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 243 ISNYEEVPSGDEQALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGV----CGTQLDHAVT 298
+ +Y++ PSGD QA A I A Y + SYK + V Q +++
Sbjct: 90 VLDYQDDPSGDAQANTNACLRFMQMIADAGYKPIYYSYKPFTHDNVDYQQILAQFPNSLW 149
Query: 299 IVGFGTTEDGANY 311
I G+G + AN+
Sbjct: 150 IAGYGLNDGTANF 162
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 6 ERSGSFKINTIPMFII-----IILLVSCASQVVSSRSTHEQSVVEMHEKWMAQHGRSYKD 60
R + + N + MFI+ I+++ C +V S S HE+ + M ++ A+ R +
Sbjct: 192 SRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQA 251
Query: 61 ELEKEMR 67
EMR
Sbjct: 252 GANAEMR 258
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 6 ERSGSFKINTIPMFII-----IILLVSCASQVVSSRSTHEQSVVEMHEKWMAQHGRSYKD 60
R + + N + MFI+ I+++ C +V S S HE+ + M ++ A+ R +
Sbjct: 191 SRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQA 250
Query: 61 ELEKEMR 67
EMR
Sbjct: 251 GANAEMR 257
>pdb|1CB5|A Chain A, Human Bleomycin Hydrolase.
pdb|1CB5|B Chain B, Human Bleomycin Hydrolase.
pdb|1CB5|C Chain C, Human Bleomycin Hydrolase
Length = 453
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 293 LDHAVTIVGFGTTED--GA-NYWLIKNSWGDTWGDAGYM 328
+ HA+T +D GA W ++NSWG+ G GY+
Sbjct: 369 MTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
>pdb|2CB5|A Chain A, Human Bleomycin Hydrolase, C73s/dele455 Mutant
pdb|2CB5|B Chain B, Human Bleomycin Hydrolase, C73s/dele455 Mutant
Length = 453
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 293 LDHAVTIVGFGTTED--GA-NYWLIKNSWGDTWGDAGYM 328
+ HA+T +D GA W ++NSWG+ G GY+
Sbjct: 369 MTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,394,205
Number of Sequences: 62578
Number of extensions: 363809
Number of successful extensions: 1359
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 910
Number of HSP's gapped (non-prelim): 151
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)