Query 018968
Match_columns 348
No_of_seqs 293 out of 1865
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:35:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018968.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018968hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 5.3E-84 1.1E-88 583.2 25.0 299 41-347 65-370 (372)
2 PTZ00203 cathepsin L protease; 100.0 7.7E-80 1.7E-84 581.6 35.2 300 40-346 31-338 (348)
3 PTZ00021 falcipain-2; Provisio 100.0 2E-78 4.3E-83 587.8 31.3 303 41-348 163-488 (489)
4 PTZ00200 cysteine proteinase; 100.0 1.2E-76 2.5E-81 573.8 31.9 302 39-348 118-445 (448)
5 KOG1543 Cysteine proteinase Ca 100.0 5.7E-71 1.2E-75 517.8 29.7 288 51-348 30-324 (325)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 1.1E-58 2.4E-63 421.4 21.6 207 136-345 1-239 (243)
7 cd02248 Peptidase_C1A Peptidas 100.0 3.1E-58 6.7E-63 409.5 21.5 207 137-346 1-210 (210)
8 cd02698 Peptidase_C1A_Cathepsi 100.0 7.4E-58 1.6E-62 414.6 21.2 206 136-347 1-237 (239)
9 cd02620 Peptidase_C1A_Cathepsi 100.0 1.5E-57 3.2E-62 411.9 20.6 204 137-344 1-234 (236)
10 PF00112 Peptidase_C1: Papain 100.0 1E-55 2.2E-60 395.0 18.6 211 136-347 1-219 (219)
11 PTZ00364 dipeptidyl-peptidase 100.0 1.5E-54 3.3E-59 425.4 21.1 207 134-344 203-455 (548)
12 PTZ00049 cathepsin C-like prot 100.0 1.7E-54 3.7E-59 429.1 21.4 212 133-347 378-675 (693)
13 smart00645 Pept_C1 Papain fami 100.0 1.9E-50 4.2E-55 348.7 17.9 167 136-343 1-170 (174)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 5E-47 1.1E-51 339.5 19.5 197 139-339 1-217 (223)
15 PTZ00462 Serine-repeat antigen 100.0 2.7E-45 5.8E-50 373.0 20.7 198 148-347 544-780 (1004)
16 KOG1544 Predicted cysteine pro 100.0 8.1E-43 1.7E-47 311.6 6.1 261 76-343 151-455 (470)
17 COG4870 Cysteine protease [Pos 100.0 3.4E-31 7.3E-36 242.9 8.2 196 135-333 98-313 (372)
18 cd00585 Peptidase_C1B Peptidas 99.9 4.8E-25 1.1E-29 212.7 14.2 182 149-333 55-399 (437)
19 PF03051 Peptidase_C1_2: Pepti 99.8 1.4E-17 3.1E-22 161.1 16.2 182 149-333 56-400 (438)
20 PF08246 Inhibitor_I29: Cathep 99.7 1.8E-17 3.9E-22 116.5 7.8 58 47-104 1-58 (58)
21 smart00848 Inhibitor_I29 Cathe 99.6 4.7E-15 1E-19 103.8 5.6 57 47-103 1-57 (57)
22 COG3579 PepC Aminopeptidase C 99.3 4.2E-12 9.2E-17 115.6 8.5 75 150-225 59-161 (444)
23 KOG4128 Bleomycin hydrolases a 98.2 1.9E-06 4.2E-11 78.9 5.5 75 149-224 63-167 (457)
24 PF13529 Peptidase_C39_2: Pept 97.1 0.0054 1.2E-07 49.9 10.4 57 252-318 87-144 (144)
25 PF05543 Peptidase_C47: Stapho 97.0 0.0073 1.6E-07 51.2 9.5 121 152-320 17-146 (175)
26 PF08127 Propeptide_C1: Peptid 96.6 0.0028 6E-08 40.7 3.6 36 75-113 3-38 (41)
27 PF14399 Transpep_BrtH: NlpC/p 89.8 0.88 1.9E-05 42.7 6.6 55 254-316 78-133 (317)
28 COG4990 Uncharacterized protei 84.7 2 4.4E-05 36.7 5.0 52 247-319 116-168 (195)
29 PF12385 Peptidase_C70: Papain 76.8 35 0.00076 28.7 9.6 38 253-305 97-135 (166)
30 cd02549 Peptidase_C39A A sub-f 69.5 14 0.00029 29.7 5.8 44 257-318 70-114 (141)
31 cd00044 CysPc Calpains, domain 69.2 18 0.00038 34.1 7.2 40 293-333 235-302 (315)
32 PF09778 Guanylate_cyc_2: Guan 67.4 18 0.00038 32.1 6.2 58 253-316 112-180 (212)
33 KOG4702 Uncharacterized conser 58.1 49 0.0011 23.7 5.8 32 45-77 29-60 (77)
34 PF01640 Peptidase_C10: Peptid 49.9 83 0.0018 27.3 7.5 49 255-329 141-192 (192)
35 smart00230 CysPc Calpain-like 38.0 61 0.0013 30.6 5.1 27 292-319 226-254 (318)
36 PF11873 DUF3393: Domain of un 32.8 50 0.0011 29.1 3.4 18 14-31 2-19 (204)
37 TIGR02608 delta_60_rpt delta-6 29.8 1.8E+02 0.004 19.7 5.4 36 296-331 13-53 (55)
38 PF11153 DUF2931: Protein of u 26.8 40 0.00087 29.8 1.8 20 13-32 1-20 (216)
39 PF07172 GRP: Glycine rich pro 26.6 60 0.0013 24.9 2.4 6 13-18 2-7 (95)
40 PF02723 NS3_envE: Non-structu 24.4 1.2E+02 0.0026 22.6 3.5 22 1-22 1-23 (82)
41 PF14940 TMEM219: Transmembran 23.5 82 0.0018 28.2 3.1 47 11-57 4-56 (223)
42 COG2854 Ttg2D ABC-type transpo 23.5 2.8E+02 0.0062 24.4 6.3 60 41-106 35-94 (202)
43 PF15588 Imm7: Immunity protei 22.0 2.6E+02 0.0057 22.0 5.4 33 296-328 17-55 (115)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-84 Score=583.19 Aligned_cols=299 Identities=36% Similarity=0.719 Sum_probs=266.4
Q ss_pred hHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcccCCCCCHHHHHHhhhccCCC-CCCCC
Q 018968 41 QSVVEMHEKWMAQHGRSYKDELEKEMRFKIFKENLEYIEKANKEGNRTYKLGTNRFSDLTNDEFRALYTGYKMP-SPSHR 119 (348)
Q Consensus 41 ~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~s~~~g~N~faDlt~~E~~~~~~~~~~~-~~~~~ 119 (348)
..+.++|..|+.+|+|+|.+.+|..+|+.||+.|+..+++++.....|..+|+|+|+|||+|||++++++.+.. .....
T Consensus 65 l~~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~~~~~~~ 144 (372)
T KOG1542|consen 65 LGLEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRRGSKLPG 144 (372)
T ss_pred cchHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhccccccccCcc
Confidence 35588999999999999999999999999999999999999887545899999999999999999999987653 11111
Q ss_pred CCCCccccccCCCCCCCCCeeecCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHhCCCCcCCCHHHHhhhcCCCCCCC
Q 018968 120 STTSSTFKYQNLSMTDVPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTNGNNGC 199 (348)
Q Consensus 120 ~~~~~~~~~~~~~~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~~gc 199 (348)
.... .. ..+...||++||||++|.||||||||+||||||||+++++|++++++++++++||||+|+||+.. +.||
T Consensus 145 ~~~~--~~--~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~~-d~gC 219 (372)
T KOG1542|consen 145 DAAE--AP--IEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDSC-DNGC 219 (372)
T ss_pred cccc--Cc--CCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccCc-CCcC
Confidence 1001 11 12335899999999999999999999999999999999999999999999999999999999987 8999
Q ss_pred CCCcHHHHHHHHHHcCCCCCCCCCCCccCCC-ccchhhccccccccceEEcCCchHHHHHHHHHc-CCeEEEEEeccccc
Q 018968 200 GGGTMEKAFEYIIQNQGIATEDEYPYQAVQG-TCSAAQKAAAAKISNYEEVPSGDEQALLKAVSM-QPVSIGIAAYTTEF 277 (348)
Q Consensus 200 ~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~-~c~~~~~~~~~~i~~y~~~~~~~~~~i~~al~~-GPV~v~~~~~~~~f 277 (348)
+||.+..|++|+++.+|+..|++|||++..+ .|........+.|.+|..++ .||++|.+.|.+ |||+|+|++. .+
T Consensus 220 ~GGl~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~~~~~~v~I~~f~~l~-~nE~~ia~wLv~~GPi~vgiNa~--~m 296 (372)
T KOG1542|consen 220 NGGLMDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFDKSKIVVSIKDFSMLS-NNEDQIAAWLVTFGPLSVGINAK--PM 296 (372)
T ss_pred CCCChhHHHHHHHHhCCccccccCCccccCCCccccchhhceEEEeccEecC-CCHHHHHHHHHhcCCeEEEEchH--HH
Confidence 9999999999988888999999999999888 99998888899999999998 489999998866 9999999975 89
Q ss_pred cccCCceEec---CCCCC-CCcEEEEEEEeecCCCccEEEEEcCCCCCCCCCceEEEEeCCCcccccCccceec
Q 018968 278 KSYKEGIFNG---VCGTQ-LDHAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKILRDEGLCGIGTQSSYPL 347 (348)
Q Consensus 278 ~~y~~Giy~~---~~~~~-~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~yp~ 347 (348)
+.|++||..+ .|++. ++|||+|||||...-.++|||||||||++|||+||+|+.|+.|.|||+++++-+.
T Consensus 297 Q~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N~CGi~~mvss~~ 370 (372)
T KOG1542|consen 297 QFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSNACGIADMVSSAA 370 (372)
T ss_pred HHhcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEeccccccccccchhhhh
Confidence 9999999988 48765 8999999999998338899999999999999999999999999999999987654
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=7.7e-80 Score=581.63 Aligned_cols=300 Identities=34% Similarity=0.687 Sum_probs=251.1
Q ss_pred hhHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcccCCCCCHHHHHHhhhccCCCCCCCC
Q 018968 40 EQSVVEMHEKWMAQHGRSYKDELEKEMRFKIFKENLEYIEKANKEGNRTYKLGTNRFSDLTNDEFRALYTGYKMPSPSHR 119 (348)
Q Consensus 40 ~~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~s~~~g~N~faDlt~~E~~~~~~~~~~~~~~~~ 119 (348)
..++..+|++|+++|+|+|.+.+|+.+|++||++|+++|++||+++ .+|++|+|+|+|||.|||.+++++.........
T Consensus 31 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~-~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~~~ 109 (348)
T PTZ00203 31 GTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARN-PHARFGITKFFDLSEAEFAARYLNGAAYFAAAK 109 (348)
T ss_pred ccHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccC-CCeEEeccccccCCHHHHHHHhcCCCccccccc
Confidence 4568888999999999999988899999999999999999999874 699999999999999999987764211110000
Q ss_pred CCCCccccccCCCCCCCCCeeecCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHhCCCCcCCCHHHHhhhcCCCCCCC
Q 018968 120 STTSSTFKYQNLSMTDVPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTNGNNGC 199 (348)
Q Consensus 120 ~~~~~~~~~~~~~~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~~gc 199 (348)
...............++|++||||++|.|+||||||.||||||||+++++|+++++++++.+.||+|+|+||+.. +.||
T Consensus 110 ~~~~~~~~~~~~~~~~lP~~~DWR~~g~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~~-~~GC 188 (348)
T PTZ00203 110 QHAGQHYRKARADLSAVPDAVDWREKGAVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDHV-DNGC 188 (348)
T ss_pred ccccccccccccccccCCCCCcCCcCCCCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccCC-CCCC
Confidence 000001111111123789999999999999999999999999999999999999999999999999999999975 7899
Q ss_pred CCCcHHHHHHHHHHc--CCCCCCCCCCCccCCC---ccchhhc-cccccccceEEcCCchHHHHHHHHHc-CCeEEEEEe
Q 018968 200 GGGTMEKAFEYIIQN--QGIATEDEYPYQAVQG---TCSAAQK-AAAAKISNYEEVPSGDEQALLKAVSM-QPVSIGIAA 272 (348)
Q Consensus 200 ~GG~~~~a~~~~~~~--~Gi~~e~~yPY~~~~~---~c~~~~~-~~~~~i~~y~~~~~~~~~~i~~al~~-GPV~v~~~~ 272 (348)
+||++..|++|+.++ +|+++|++|||.+.++ .|..... ....++.+|..++. +++.|+.+|.+ |||++++++
T Consensus 189 ~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~-~e~~~~~~l~~~GPv~v~i~a 267 (348)
T PTZ00203 189 GGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMES-SERVMAAWLAKNGPISIAVDA 267 (348)
T ss_pred CCCCHHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCc-CHHHHHHHHHhCCCEEEEEEh
Confidence 999999999999864 5789999999998766 6864322 23467889988875 78889999976 999999998
Q ss_pred ccccccccCCceEecCCC-CCCCcEEEEEEEeecCCCccEEEEEcCCCCCCCCCceEEEEeCCCcccccCcccee
Q 018968 273 YTTEFKSYKEGIFNGVCG-TQLDHAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKILRDEGLCGIGTQSSYP 346 (348)
Q Consensus 273 ~~~~f~~y~~Giy~~~~~-~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~yp 346 (348)
. +|+.|++|||+. |. ..++|||+|||||.+ +|.+|||||||||++|||+|||||+|+.|.|||++.+...
T Consensus 268 ~--~f~~Y~~GIy~~-c~~~~~nHaVliVGYG~~-~g~~YWiikNSWG~~WGe~GY~ri~rg~n~Cgi~~~~~~~ 338 (348)
T PTZ00203 268 S--SFMSYHSGVLTS-CIGEQLNHGVLLVGYNMT-GEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYPVSV 338 (348)
T ss_pred h--hhcCccCceeec-cCCCCCCeEEEEEEEecC-CCceEEEEEcCCCCCcCcCceEEEEcCCCcccccceEEEE
Confidence 5 899999999985 75 457999999999987 7899999999999999999999999999999999777643
No 3
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=2e-78 Score=587.75 Aligned_cols=303 Identities=39% Similarity=0.727 Sum_probs=256.5
Q ss_pred hHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcccCCCCCHHHHHHhhhccCCCCCCC-C
Q 018968 41 QSVVEMHEKWMAQHGRSYKDELEKEMRFKIFKENLEYIEKANKEGNRTYKLGTNRFSDLTNDEFRALYTGYKMPSPSH-R 119 (348)
Q Consensus 41 ~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~s~~~g~N~faDlt~~E~~~~~~~~~~~~~~~-~ 119 (348)
.+....|++|+++|+|+|.+.+|+.+|+.||++|++.|++||++++.+|++|+|+|+|||.|||++++++........ .
T Consensus 163 ~e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~~~~~ 242 (489)
T PTZ00021 163 LENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKSFDFKSNG 242 (489)
T ss_pred hHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhcccccccccccc
Confidence 444567999999999999999999999999999999999999876689999999999999999999887644211000 0
Q ss_pred C--CCCcccc-----ccCCCCCCCCCeeecCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHhCCCCcCCCHHHHhhhc
Q 018968 120 S--TTSSTFK-----YQNLSMTDVPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCS 192 (348)
Q Consensus 120 ~--~~~~~~~-----~~~~~~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~ 192 (348)
. ....... ..+......|+++|||+.|.|+||||||.||||||||+++++|+++++++++.+.||+|+|+||+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~P~s~DWR~~g~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQqLVDCs 322 (489)
T PTZ00021 243 KKSPRVINYDDVIKKYKPKDATFDHAKYDWRLHNGVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDCS 322 (489)
T ss_pred ccccccccccccccccccccccCCccccccccCCCCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHHHHhhhc
Confidence 0 0000000 00001112499999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHcCCCCCCCCCCCccC-CCccchhhccccccccceEEcCCchHHHHHHHHHc-CCeEEEE
Q 018968 193 TNGNNGCGGGTMEKAFEYIIQNQGIATEDEYPYQAV-QGTCSAAQKAAAAKISNYEEVPSGDEQALLKAVSM-QPVSIGI 270 (348)
Q Consensus 193 ~~~~~gc~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~-~~~c~~~~~~~~~~i~~y~~~~~~~~~~i~~al~~-GPV~v~~ 270 (348)
.. +.||+||++..|++|+.+++|+++|++|||.+. .+.|........++|.+|..++ +++|+++|.. |||+|++
T Consensus 323 ~~-n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~~~~~~~~i~~y~~i~---~~~lk~al~~~GPVsv~i 398 (489)
T PTZ00021 323 FK-NNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPELCNIDRCKEKYKIKSYVSIP---EDKFKEAIRFLGPISVSI 398 (489)
T ss_pred cC-CCCCCCcchHhhhhhhhhccccCcccccCccCCCCCccccccccccceeeeEEEec---HHHHHHHHHhcCCeEEEE
Confidence 75 889999999999999988879999999999987 4789765445567899999886 4679999986 9999999
Q ss_pred EeccccccccCCceEecCCCCCCCcEEEEEEEeecC---------CCccEEEEEcCCCCCCCCCceEEEEeCC----Ccc
Q 018968 271 AAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTE---------DGANYWLIKNSWGDTWGDAGYMKILRDE----GLC 337 (348)
Q Consensus 271 ~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~~---------~g~~ywivkNSWG~~WG~~Gy~~i~~~~----~~C 337 (348)
++. .+|+.|++|||+.+|+..++|||+|||||++. .+.+|||||||||++|||+|||||+|+. |+|
T Consensus 399 ~a~-~~f~~YkgGIy~~~C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~~n~C 477 (489)
T PTZ00021 399 AVS-DDFAFYKGGIFDGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGLMKTC 477 (489)
T ss_pred Eee-cccccCCCCcCCCCCCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCCCCCC
Confidence 997 69999999999988988889999999999752 1257999999999999999999999994 699
Q ss_pred cccCccceecC
Q 018968 338 GIGTQSSYPLA 348 (348)
Q Consensus 338 gi~~~~~yp~~ 348 (348)
||++.++||+.
T Consensus 478 GI~t~a~yP~~ 488 (489)
T PTZ00021 478 SLGTEAYVPLI 488 (489)
T ss_pred CCcccceeEec
Confidence 99999999974
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=1.2e-76 Score=573.83 Aligned_cols=302 Identities=36% Similarity=0.679 Sum_probs=254.4
Q ss_pred chhHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcccCCCCCHHHHHHhhhccCCCCCCC
Q 018968 39 HEQSVVEMHEKWMAQHGRSYKDELEKEMRFKIFKENLEYIEKANKEGNRTYKLGTNRFSDLTNDEFRALYTGYKMPSPSH 118 (348)
Q Consensus 39 ~~~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~s~~~g~N~faDlt~~E~~~~~~~~~~~~~~~ 118 (348)
.+.++...|++|+++|+|.|.+.+|+.+|+.+|++|++.|++||.. .+|++|+|+|+|||+|||.+++++.+.+....
T Consensus 118 ~e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~--~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~~ 195 (448)
T PTZ00200 118 LEFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKGD--EPYSKEINKFSDLTEEEFRKLFPVIKVPPKSN 195 (448)
T ss_pred chHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcCc--CCeEEeccccccCCHHHHHHHhccCCCccccc
Confidence 3567778899999999999999999999999999999999999963 68999999999999999998887644321100
Q ss_pred C-------C---CCCccc----cc-----cCC-C-CCCCCCeeecCCCCCCCccCCCC-CCcchHHHHHHHHHHHHHHHh
Q 018968 119 R-------S---TTSSTF----KY-----QNL-S-MTDVPTSLDWRDKKAVTPIKDQQ-ECGCCWAFSAVAAVEGITKIS 176 (348)
Q Consensus 119 ~-------~---~~~~~~----~~-----~~~-~-~~~lP~~~Dwr~~g~v~pV~dQg-~cGsCwAfA~~~~le~~~~~~ 176 (348)
. . .....+ .. .+. . ...+|++||||+.|.|+|||||| .||||||||+++++|++++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~ 275 (448)
T PTZ00200 196 STSHNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIY 275 (448)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCccCCCCCCCCCcccCCCccchHHHHhHHHHHHHHHHHh
Confidence 0 0 000000 00 000 0 01369999999999999999999 999999999999999999999
Q ss_pred CCCCcCCCHHHHhhhcCCCCCCCCCCcHHHHHHHHHHcCCCCCCCCCCCccCCCccchhhccccccccceEEcCCchHHH
Q 018968 177 GANLIQLSEQQLVDCSTNGNNGCGGGTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSAAQKAAAAKISNYEEVPSGDEQA 256 (348)
Q Consensus 177 ~~~~~~lS~q~l~dc~~~~~~gc~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~c~~~~~~~~~~i~~y~~~~~~~~~~ 256 (348)
++..+.||+|+|+||+.. +.||+||++..|++|+.++ |+++|++|||.+..+.|..... ....|.+|..++ ..+.
T Consensus 276 ~~~~~~LSeQqLvDC~~~-~~GC~GG~~~~A~~yi~~~-Gi~~e~~YPY~~~~~~C~~~~~-~~~~i~~y~~~~--~~~~ 350 (448)
T PTZ00200 276 RDKSVDLSEQELVNCDTK-SQGCSGGYPDTALEYVKNK-GLSSSSDVPYLAKDGKCVVSST-KKVYIDSYLVAK--GKDV 350 (448)
T ss_pred cCCCeecCHHHHhhccCc-cCCCCCCcHHHHHHHHhhc-CccccccCCCCCCCCCCcCCCC-CeeEecceEecC--HHHH
Confidence 899999999999999975 7899999999999999877 9999999999999999976532 345688888665 3456
Q ss_pred HHHHHHcCCeEEEEEeccccccccCCceEecCCCCCCCcEEEEEEEeec-CCCccEEEEEcCCCCCCCCCceEEEEeC--
Q 018968 257 LLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTT-EDGANYWLIKNSWGDTWGDAGYMKILRD-- 333 (348)
Q Consensus 257 i~~al~~GPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~-~~g~~ywivkNSWG~~WG~~Gy~~i~~~-- 333 (348)
+++++..|||+++++++ .+|+.|++|||+++|+..++|||+|||||.+ .+|.+|||||||||++|||+|||||+|+
T Consensus 351 l~~~l~~GPV~v~i~~~-~~f~~Yk~GIy~~~C~~~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~ 429 (448)
T PTZ00200 351 LNKSLVISPTVVYIAVS-RELLKYKSGVYNGECGKSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNE 429 (448)
T ss_pred HHHHHhcCCEEEEeecc-cccccCCCCccccccCCCCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEeCCC
Confidence 77777779999999997 7999999999998898779999999999954 3688999999999999999999999996
Q ss_pred -CCcccccCccceecC
Q 018968 334 -EGLCGIGTQSSYPLA 348 (348)
Q Consensus 334 -~~~Cgi~~~~~yp~~ 348 (348)
.|.|||++.+.||+.
T Consensus 430 g~n~CGI~~~~~~P~~ 445 (448)
T PTZ00200 430 GTDKCGILTVGLTPVF 445 (448)
T ss_pred CCCcCCccccceeeEE
Confidence 589999999999973
No 5
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-71 Score=517.77 Aligned_cols=288 Identities=44% Similarity=0.839 Sum_probs=253.0
Q ss_pred HHHhCCccCChHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcccCCCCCHHHHHHhhhccCCCCCCCCCCCCccccccC
Q 018968 51 MAQHGRSYKDELEKEMRFKIFKENLEYIEKANKEGNRTYKLGTNRFSDLTNDEFRALYTGYKMPSPSHRSTTSSTFKYQN 130 (348)
Q Consensus 51 ~~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~s~~~g~N~faDlt~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (348)
+.+|.+.|.+..|+..|+.+|.+|++.|+.||.....+|++++|+|+|++.+|+++.+.+.+++... .. . .. ..
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~~-~~---~-~~-~~ 103 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEIK-RD---K-FT-EK 103 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCcccc-cc---c-cc-cc
Confidence 6677788876788999999999999999999998678999999999999999999988876654331 10 0 11 11
Q ss_pred CCCCCCCCeeecCCCC-CCCccCCCCCCcchHHHHHHHHHHHHHHHhCC-CCcCCCHHHHhhhcCCCCCCCCCCcHHHHH
Q 018968 131 LSMTDVPTSLDWRDKK-AVTPIKDQQECGCCWAFSAVAAVEGITKISGA-NLIQLSEQQLVDCSTNGNNGCGGGTMEKAF 208 (348)
Q Consensus 131 ~~~~~lP~~~Dwr~~g-~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~-~~~~lS~q~l~dc~~~~~~gc~GG~~~~a~ 208 (348)
....++|++||||+++ .++|||||+.||||||||++++||++++++++ .++.||+|+|+||....+.||+||.+..|+
T Consensus 104 ~~~~~~p~s~DwR~~~~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~GC~GG~~~~A~ 183 (325)
T KOG1543|consen 104 LDGDDLPDSFDWRDKGAVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGECGDGCNGGEPKNAF 183 (325)
T ss_pred cchhhCCCCccccccCCcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCCCCCCcCCCCHHHHH
Confidence 2234899999999996 55669999999999999999999999999999 899999999999998657899999999999
Q ss_pred HHHHHcCCCCC-CCCCCCccCCCccchhhccccccccceEEcCCchHHHHHHHHHc-CCeEEEEEeccccccccCCceEe
Q 018968 209 EYIIQNQGIAT-EDEYPYQAVQGTCSAAQKAAAAKISNYEEVPSGDEQALLKAVSM-QPVSIGIAAYTTEFKSYKEGIFN 286 (348)
Q Consensus 209 ~~~~~~~Gi~~-e~~yPY~~~~~~c~~~~~~~~~~i~~y~~~~~~~~~~i~~al~~-GPV~v~~~~~~~~f~~y~~Giy~ 286 (348)
+|+.++ |+++ +++|||.+..+.|........+.+.++..++.+ +++|+++|++ |||+++|++. .+|+.|++|||.
T Consensus 184 ~yi~~~-G~~t~~~~Ypy~~~~~~C~~~~~~~~~~~~~~~~~~~~-e~~i~~~v~~~GPv~v~~~a~-~~F~~Y~~GVy~ 260 (325)
T KOG1543|consen 184 KYIKKN-GGVTECENYPYIGKDGTCKSNKKDKTVTIKGFYNVPAN-EEAIAEAVAKNGPVSVAIDAY-EDFSLYKGGVYA 260 (325)
T ss_pred HHHHHh-CCCCCCcCCCCcCCCCCccCCCccceeEeeeeeecCcC-HHHHHHHHHhcCCeEEEEeeh-hhhhhccCceEe
Confidence 999999 6666 999999999999998866677788888888864 9999999977 9999999999 599999999999
Q ss_pred cCCCC--CCCcEEEEEEEeecCCCccEEEEEcCCCCCCCCCceEEEEeCCCcccccCccce-ecC
Q 018968 287 GVCGT--QLDHAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKILRDEGLCGIGTQSSY-PLA 348 (348)
Q Consensus 287 ~~~~~--~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~y-p~~ 348 (348)
++++. .++|||+|||||. .++.+|||||||||++|||+|||||.|+.+.|+|++.++| |++
T Consensus 261 ~~~~~~~~~~Hav~iVGyG~-~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~~I~~~~~~~p~~ 324 (325)
T KOG1543|consen 261 EEKGDDKEGDHAVLIVGYGT-GDGVDYWIVKNSWGTDWGEKGYFRIARGVNKCGIASEASYGPIK 324 (325)
T ss_pred CCCCCCCCCCceEEEEEEcC-CCCceeEEEEcCCCCCcccCceEEEecCCCchhhhcccccCCCC
Confidence 98554 5999999999999 5889999999999999999999999999999999999999 763
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=1.1e-58 Score=421.39 Aligned_cols=207 Identities=35% Similarity=0.731 Sum_probs=181.5
Q ss_pred CCCeeecCCCC----CCCccCCCCCCcchHHHHHHHHHHHHHHHhCCC------CcCCCHHHHhhhcCCCCCCCCCCcHH
Q 018968 136 VPTSLDWRDKK----AVTPIKDQQECGCCWAFSAVAAVEGITKISGAN------LIQLSEQQLVDCSTNGNNGCGGGTME 205 (348)
Q Consensus 136 lP~~~Dwr~~g----~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~------~~~lS~q~l~dc~~~~~~gc~GG~~~ 205 (348)
||++||||+.+ .|+||+||+.||+|||||++++||+++++++++ .+.||+|+|+||+.. +.+|+||++.
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~-~~GC~GG~~~ 79 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQY-SQGCDGGFPF 79 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCC-CCCCCCCCHH
Confidence 69999999998 999999999999999999999999999998766 689999999999875 7899999999
Q ss_pred HHHHHHHHcCCCCCCCCCCCcc-CCCccchhh-ccccccccceEEcC----CchHHHHHHHHHc-CCeEEEEEecccccc
Q 018968 206 KAFEYIIQNQGIATEDEYPYQA-VQGTCSAAQ-KAAAAKISNYEEVP----SGDEQALLKAVSM-QPVSIGIAAYTTEFK 278 (348)
Q Consensus 206 ~a~~~~~~~~Gi~~e~~yPY~~-~~~~c~~~~-~~~~~~i~~y~~~~----~~~~~~i~~al~~-GPV~v~~~~~~~~f~ 278 (348)
.+++|+.++ |+++|++|||.. ..+.|.... .....++.+|..+. ..++++|+++|.+ |||++++++. ++|+
T Consensus 80 ~a~~~~~~~-Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~-~~F~ 157 (243)
T cd02621 80 LVGKFAEDF-GIVTEDYFPYTADDDRPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVY-SDFD 157 (243)
T ss_pred HHHHHHHhc-CcCCCceeCCCCCCCCCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEec-cccc
Confidence 999999887 999999999998 778897643 33445555555542 2478899999976 9999999998 7999
Q ss_pred ccCCceEecC-----CCC---------CCCcEEEEEEEeecC-CCccEEEEEcCCCCCCCCCceEEEEeCCCcccccCcc
Q 018968 279 SYKEGIFNGV-----CGT---------QLDHAVTIVGFGTTE-DGANYWLIKNSWGDTWGDAGYMKILRDEGLCGIGTQS 343 (348)
Q Consensus 279 ~y~~Giy~~~-----~~~---------~~~Hav~iVGyg~~~-~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~ 343 (348)
.|++|||+.+ |.. .++|||+|||||++. ++.+|||||||||++|||+|||||+|+.|.|||++.+
T Consensus 158 ~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~~~cgi~~~~ 237 (243)
T cd02621 158 FYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQA 237 (243)
T ss_pred ccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCCcccCcccce
Confidence 9999999875 542 468999999999984 3889999999999999999999999999999999998
Q ss_pred ce
Q 018968 344 SY 345 (348)
Q Consensus 344 ~y 345 (348)
++
T Consensus 238 ~~ 239 (243)
T cd02621 238 VF 239 (243)
T ss_pred Ee
Confidence 65
No 7
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=3.1e-58 Score=409.53 Aligned_cols=207 Identities=54% Similarity=1.070 Sum_probs=191.2
Q ss_pred CCeeecCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHhCCCCcCCCHHHHhhhcCCCCCCCCCCcHHHHHHHHHHcCC
Q 018968 137 PTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTNGNNGCGGGTMEKAFEYIIQNQG 216 (348)
Q Consensus 137 P~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~~gc~GG~~~~a~~~~~~~~G 216 (348)
|++||||+.+.++||+|||.||+|||||++++||++++++++...+||+|+|++|....+.+|.||+...+++++.++ |
T Consensus 1 P~~~d~r~~~~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~gC~GG~~~~a~~~~~~~-G 79 (210)
T cd02248 1 PESVDWREKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEYVKNG-G 79 (210)
T ss_pred CCcccCCcCCCCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCCCCCCCCCCCHHHhHHHHHHC-C
Confidence 789999999999999999999999999999999999999998889999999999987446899999999999988776 9
Q ss_pred CCCCCCCCCccCCCccchhhccccccccceEEcCCchHHHHHHHHHc-CCeEEEEEeccccccccCCceEecCCC--CCC
Q 018968 217 IATEDEYPYQAVQGTCSAAQKAAAAKISNYEEVPSGDEQALLKAVSM-QPVSIGIAAYTTEFKSYKEGIFNGVCG--TQL 293 (348)
Q Consensus 217 i~~e~~yPY~~~~~~c~~~~~~~~~~i~~y~~~~~~~~~~i~~al~~-GPV~v~~~~~~~~f~~y~~Giy~~~~~--~~~ 293 (348)
+++|++|||......|.........+|.+|..++..++++||++|.+ |||++++.+. ++|+.|++|||+.++. ..+
T Consensus 80 i~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~-~~f~~y~~Giy~~~~~~~~~~ 158 (210)
T cd02248 80 LASESDYPYTGKDGTCKYNSSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDAS-SSFQFYKGGIYSGPCCSNTNL 158 (210)
T ss_pred cCccccCCccCCCCCccCCCCcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecC-cccccCCCCceeCCCCCCCcC
Confidence 99999999999888998776667889999999987678999999987 9999999998 7999999999988643 567
Q ss_pred CcEEEEEEEeecCCCccEEEEEcCCCCCCCCCceEEEEeCCCcccccCcccee
Q 018968 294 DHAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKILRDEGLCGIGTQSSYP 346 (348)
Q Consensus 294 ~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~yp 346 (348)
+|||+|||||++ .+.+|||||||||++||++|||||+|+.|.|||++.+.||
T Consensus 159 ~Hav~iVGy~~~-~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~~ 210 (210)
T cd02248 159 NHAVLLVGYGTE-NGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYASYP 210 (210)
T ss_pred CEEEEEEEEeec-CCceEEEEEcCCCCccccCcEEEEEcCCCccCceeeeecC
Confidence 999999999998 6889999999999999999999999999999999998887
No 8
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=7.4e-58 Score=414.56 Aligned_cols=206 Identities=29% Similarity=0.690 Sum_probs=180.3
Q ss_pred CCCeeecCCCC---CCCccCCCC---CCcchHHHHHHHHHHHHHHHhCC---CCcCCCHHHHhhhcCCCCCCCCCCcHHH
Q 018968 136 VPTSLDWRDKK---AVTPIKDQQ---ECGCCWAFSAVAAVEGITKISGA---NLIQLSEQQLVDCSTNGNNGCGGGTMEK 206 (348)
Q Consensus 136 lP~~~Dwr~~g---~v~pV~dQg---~cGsCwAfA~~~~le~~~~~~~~---~~~~lS~q~l~dc~~~~~~gc~GG~~~~ 206 (348)
||++||||+.+ +|+|||||| .||||||||++++||++++++++ ..+.||+|+|+||+. +.+|+||++..
T Consensus 1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~--~~gC~GG~~~~ 78 (239)
T cd02698 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG--GGSCHGGDPGG 78 (239)
T ss_pred CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC--CCCccCcCHHH
Confidence 69999999987 899999998 89999999999999999998765 357899999999987 68999999999
Q ss_pred HHHHHHHcCCCCCCCCCCCccCCCccchh---------------hccccccccceEEcCCchHHHHHHHHHc-CCeEEEE
Q 018968 207 AFEYIIQNQGIATEDEYPYQAVQGTCSAA---------------QKAAAAKISNYEEVPSGDEQALLKAVSM-QPVSIGI 270 (348)
Q Consensus 207 a~~~~~~~~Gi~~e~~yPY~~~~~~c~~~---------------~~~~~~~i~~y~~~~~~~~~~i~~al~~-GPV~v~~ 270 (348)
+++|+.++ |+++|++|||......|... .....+++++|..++ ++++|+++|.+ |||++++
T Consensus 79 a~~~~~~~-Gl~~e~~yPY~~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~--~~~~i~~~l~~~GPV~v~i 155 (239)
T cd02698 79 VYEYAHKH-GIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVS--GRDKMMAEIYARGPISCGI 155 (239)
T ss_pred HHHHHHHc-CcCCCCeeCCcCCCCCCcCCCCCCCcccCcccccccccceEEeeeceecC--CHHHHHHHHHHcCCEEEEE
Confidence 99999887 99999999999877777531 011235667777775 57889999865 9999999
Q ss_pred EeccccccccCCceEecC-CCCCCCcEEEEEEEeecCCCccEEEEEcCCCCCCCCCceEEEEeCC-----CcccccCccc
Q 018968 271 AAYTTEFKSYKEGIFNGV-CGTQLDHAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKILRDE-----GLCGIGTQSS 344 (348)
Q Consensus 271 ~~~~~~f~~y~~Giy~~~-~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~-----~~Cgi~~~~~ 344 (348)
.+. .+|+.|++|||+.+ |...++|||+|||||++.++++|||||||||++|||+|||||+|+. |+|||++.++
T Consensus 156 ~~~-~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~~ 234 (239)
T cd02698 156 MAT-EALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCA 234 (239)
T ss_pred Eec-ccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccceE
Confidence 998 59999999999886 4566899999999998744899999999999999999999999998 9999999999
Q ss_pred eec
Q 018968 345 YPL 347 (348)
Q Consensus 345 yp~ 347 (348)
|+.
T Consensus 235 ~~~ 237 (239)
T cd02698 235 WAD 237 (239)
T ss_pred EEe
Confidence 874
No 9
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=1.5e-57 Score=411.89 Aligned_cols=204 Identities=36% Similarity=0.736 Sum_probs=175.7
Q ss_pred CCeeecCCC--CC--CCccCCCCCCcchHHHHHHHHHHHHHHHhCC--CCcCCCHHHHhhhcCCCCCCCCCCcHHHHHHH
Q 018968 137 PTSLDWRDK--KA--VTPIKDQQECGCCWAFSAVAAVEGITKISGA--NLIQLSEQQLVDCSTNGNNGCGGGTMEKAFEY 210 (348)
Q Consensus 137 P~~~Dwr~~--g~--v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~--~~~~lS~q~l~dc~~~~~~gc~GG~~~~a~~~ 210 (348)
|++||||+. ++ |+||+|||.||+|||||++++||+++.++++ +.+.||+|+|+||+..++.+|+||++..+++|
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~GG~~~~a~~~ 80 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGYPDAAWKY 80 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCCCCHHHHHHH
Confidence 899999997 44 4599999999999999999999999999887 77899999999998754689999999999999
Q ss_pred HHHcCCCCCCCCCCCccCCCc------------------cchhh----ccccccccceEEcCCchHHHHHHHHHc-CCeE
Q 018968 211 IIQNQGIATEDEYPYQAVQGT------------------CSAAQ----KAAAAKISNYEEVPSGDEQALLKAVSM-QPVS 267 (348)
Q Consensus 211 ~~~~~Gi~~e~~yPY~~~~~~------------------c~~~~----~~~~~~i~~y~~~~~~~~~~i~~al~~-GPV~ 267 (348)
++++ |+++|++|||.+.... |.... ....+++..+..+. .++++||++|.+ |||+
T Consensus 81 i~~~-G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~-~~~~~ik~~l~~~GPv~ 158 (236)
T cd02620 81 LTTT-GVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVP-SDETDIMKEIMTNGPVQ 158 (236)
T ss_pred HHhc-CCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeC-CHHHHHHHHHHHCCCeE
Confidence 9987 9999999999876543 33221 11234455666665 478899999976 9999
Q ss_pred EEEEeccccccccCCceEecCCCC-CCCcEEEEEEEeecCCCccEEEEEcCCCCCCCCCceEEEEeCCCcccccCccc
Q 018968 268 IGIAAYTTEFKSYKEGIFNGVCGT-QLDHAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKILRDEGLCGIGTQSS 344 (348)
Q Consensus 268 v~~~~~~~~f~~y~~Giy~~~~~~-~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~ 344 (348)
+++.+. ++|+.|++|||+..|+. .++|||+|||||++ ++.+|||||||||++|||+|||||+|+.|.|||++.++
T Consensus 159 v~i~~~-~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~-~g~~YWivrNSWG~~WGe~Gy~ri~~~~~~cgi~~~~~ 234 (236)
T cd02620 159 AAFTVY-EDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVE-NGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVV 234 (236)
T ss_pred EEEEec-hhhhhcCCcEEeecCCCCcCCeEEEEEEEecc-CCeeEEEEEeCCCCCCCCCcEEEEEccCccccccccee
Confidence 999997 79999999999876654 46899999999988 88999999999999999999999999999999999875
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=1e-55 Score=394.99 Aligned_cols=211 Identities=43% Similarity=0.875 Sum_probs=184.5
Q ss_pred CCCeeecCCC-CCCCccCCCCCCcchHHHHHHHHHHHHHHHhC-CCCcCCCHHHHhhhcCCCCCCCCCCcHHHHHHHHHH
Q 018968 136 VPTSLDWRDK-KAVTPIKDQQECGCCWAFSAVAAVEGITKISG-ANLIQLSEQQLVDCSTNGNNGCGGGTMEKAFEYIIQ 213 (348)
Q Consensus 136 lP~~~Dwr~~-g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~-~~~~~lS~q~l~dc~~~~~~gc~GG~~~~a~~~~~~ 213 (348)
||++||||+. +.++||+||+.||+|||||+++++|++++++. ...++||+|+|++|....+.+|+||++..|++++++
T Consensus 1 lP~~~D~r~~~~~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~~c~gg~~~~a~~~~~~ 80 (219)
T PF00112_consen 1 LPKSFDWRDKGGRITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNKYNKGCDGGSPFDALKYIKN 80 (219)
T ss_dssp STSSEEGGGTTTCSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTGTSSTTBBBEHHHHHHHHHH
T ss_pred CCCCEecccCCCCcCccccCCcccccccchhccceeccccccccccccccccccccccccccccccccCcccccceeecc
Confidence 7999999998 48999999999999999999999999999998 788999999999999733679999999999999999
Q ss_pred cCCCCCCCCCCCccCC-Cccchhhccc-cccccceEEcCCchHHHHHHHHHc-CCeEEEEEeccccccccCCceEecC-C
Q 018968 214 NQGIATEDEYPYQAVQ-GTCSAAQKAA-AAKISNYEEVPSGDEQALLKAVSM-QPVSIGIAAYTTEFKSYKEGIFNGV-C 289 (348)
Q Consensus 214 ~~Gi~~e~~yPY~~~~-~~c~~~~~~~-~~~i~~y~~~~~~~~~~i~~al~~-GPV~v~~~~~~~~f~~y~~Giy~~~-~ 289 (348)
+.|+++|++|||.... ..|....... ..++..|..+...+.++||++|.+ |||++++.+...+|..|++|||+.+ |
T Consensus 81 ~~Gi~~e~~~pY~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~~~~ 160 (219)
T PF00112_consen 81 NNGIVTEEDYPYNGNENPTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDPPDC 160 (219)
T ss_dssp HTSBEBTTTS--SSSSSCSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECSTSS
T ss_pred cCcccccccccccccccccccccccccccccccccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeecccc
Confidence 3499999999999887 6898764433 478899999987679999999988 9999999999446999999999985 6
Q ss_pred C-CCCCcEEEEEEEeecCCCccEEEEEcCCCCCCCCCceEEEEeCCC-cccccCccceec
Q 018968 290 G-TQLDHAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKILRDEG-LCGIGTQSSYPL 347 (348)
Q Consensus 290 ~-~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~-~Cgi~~~~~yp~ 347 (348)
. ..++|||+|||||++ .+++|||||||||++||++||+||+|+.+ +|||++.++||+
T Consensus 161 ~~~~~~Hav~iVGy~~~-~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 161 SNESGGHAVLIVGYDDE-NGKGYWIVKNSWGTDWGDNGYFRISYDYNNECGIESQAVYPI 219 (219)
T ss_dssp SSSSEEEEEEEEEEEEE-TTEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGTTSSEEEEE
T ss_pred ccccccccccccccccc-cceeeEeeehhhCCccCCCeEEEEeeCCCCcCccCceeeecC
Confidence 5 478999999999998 69999999999999999999999999976 999999999996
No 11
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=1.5e-54 Score=425.43 Aligned_cols=207 Identities=26% Similarity=0.524 Sum_probs=177.0
Q ss_pred CCCCCeeecCCCC---CCCccCCCCC---CcchHHHHHHHHHHHHHHHhCC------CCcCCCHHHHhhhcCCCCCCCCC
Q 018968 134 TDVPTSLDWRDKK---AVTPIKDQQE---CGCCWAFSAVAAVEGITKISGA------NLIQLSEQQLVDCSTNGNNGCGG 201 (348)
Q Consensus 134 ~~lP~~~Dwr~~g---~v~pV~dQg~---cGsCwAfA~~~~le~~~~~~~~------~~~~lS~q~l~dc~~~~~~gc~G 201 (348)
.+||++||||+.| +|+||||||. ||||||||++++||++++++++ ..+.||+|+|+||+.. +.||+|
T Consensus 203 ~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~-n~GCdG 281 (548)
T PTZ00364 203 DPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQY-GQGCAG 281 (548)
T ss_pred cCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccCC-CCCCCC
Confidence 4799999999987 7899999999 9999999999999999999873 4688999999999875 789999
Q ss_pred CcHHHHHHHHHHcCCCCCCCCC--CCccCCC---ccchhhccccccccc------eEEcCCchHHHHHHHHHc-CCeEEE
Q 018968 202 GTMEKAFEYIIQNQGIATEDEY--PYQAVQG---TCSAAQKAAAAKISN------YEEVPSGDEQALLKAVSM-QPVSIG 269 (348)
Q Consensus 202 G~~~~a~~~~~~~~Gi~~e~~y--PY~~~~~---~c~~~~~~~~~~i~~------y~~~~~~~~~~i~~al~~-GPV~v~ 269 (348)
|++..|++|+.++ |+++|++| ||.+.++ .|+.......+.+.+ |..+. +++++|+.+|.+ |||+++
T Consensus 282 G~p~~A~~yi~~~-GI~tE~dY~~PY~~~dg~~~~Ck~~~~~~~y~~~~~~~I~gyy~~~-~~e~~I~~eI~~~GPVsVa 359 (548)
T PTZ00364 282 GFPEEVGKFAETF-GILTTDSYYIPYDSGDGVERACKTRRPSRRYYFTNYGPLGGYYGAV-TDPDEIIWEIYRHGPVPAS 359 (548)
T ss_pred CcHHHHHHHHHhC-CcccccccCCCCCCCCCCCCCCCCCcccceeeeeeeEEecceeecC-CcHHHHHHHHHHcCCeEEE
Confidence 9999999999887 99999999 9987655 587643333333443 44443 467889999876 999999
Q ss_pred EEeccccccccCCceEec---------CC-----------CCCCCcEEEEEEEeecCCCccEEEEEcCCCC--CCCCCce
Q 018968 270 IAAYTTEFKSYKEGIFNG---------VC-----------GTQLDHAVTIVGFGTTEDGANYWLIKNSWGD--TWGDAGY 327 (348)
Q Consensus 270 ~~~~~~~f~~y~~Giy~~---------~~-----------~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~--~WG~~Gy 327 (348)
++++ .+|+.|++|||.+ .| ...++|||+|||||.+++|.+|||||||||+ +|||+||
T Consensus 360 Ida~-~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GY 438 (548)
T PTZ00364 360 VYAN-SDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGT 438 (548)
T ss_pred EEec-hHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCe
Confidence 9998 6899999999862 11 1347999999999986578899999999999 9999999
Q ss_pred EEEEeCCCcccccCccc
Q 018968 328 MKILRDEGLCGIGTQSS 344 (348)
Q Consensus 328 ~~i~~~~~~Cgi~~~~~ 344 (348)
|||+|+.|+|||++.++
T Consensus 439 fRI~RG~N~CGIes~~v 455 (548)
T PTZ00364 439 RKIARGVNAYNIESEVV 455 (548)
T ss_pred EEEEcCCCcccccceee
Confidence 99999999999999887
No 12
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=1.7e-54 Score=429.12 Aligned_cols=212 Identities=28% Similarity=0.606 Sum_probs=178.4
Q ss_pred CCCCCCeeecCCC----CCCCccCCCCCCcchHHHHHHHHHHHHHHHhCCC-----C-----cCCCHHHHhhhcCCCCCC
Q 018968 133 MTDVPTSLDWRDK----KAVTPIKDQQECGCCWAFSAVAAVEGITKISGAN-----L-----IQLSEQQLVDCSTNGNNG 198 (348)
Q Consensus 133 ~~~lP~~~Dwr~~----g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~-----~-----~~lS~q~l~dc~~~~~~g 198 (348)
..+||++||||+. +.++||+|||.||||||||++++||++++++.+. . ..||+|+|+||+.. +.|
T Consensus 378 ~~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~-nqG 456 (693)
T PTZ00049 378 IDELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFY-DQG 456 (693)
T ss_pred cccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCC-CCC
Confidence 3589999999984 6789999999999999999999999999998642 1 27999999999985 889
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCCCCCCccCCCccchhhc---------------------------------------cc
Q 018968 199 CGGGTMEKAFEYIIQNQGIATEDEYPYQAVQGTCSAAQK---------------------------------------AA 239 (348)
Q Consensus 199 c~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~c~~~~~---------------------------------------~~ 239 (348)
|+||++..|++|+.++ ||++|++|||.+..+.|+.... ..
T Consensus 457 C~GG~~~~A~kya~~~-GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (693)
T PTZ00049 457 CNGGFPYLVSKMAKLQ-GIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPA 535 (693)
T ss_pred cCCCcHHHHHHHHHHC-CCCcCCccCCcCCCCCCCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999887 9999999999988888854211 01
Q ss_pred cccccceEEcC-------CchHHHHHHHHHc-CCeEEEEEeccccccccCCceEecC-------CCC-------------
Q 018968 240 AAKISNYEEVP-------SGDEQALLKAVSM-QPVSIGIAAYTTEFKSYKEGIFNGV-------CGT------------- 291 (348)
Q Consensus 240 ~~~i~~y~~~~-------~~~~~~i~~al~~-GPV~v~~~~~~~~f~~y~~Giy~~~-------~~~------------- 291 (348)
++.+++|..+. .+++++|+++|.+ |||++++++. .+|+.|++|||+.+ |..
T Consensus 536 r~y~k~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~-~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G 614 (693)
T PTZ00049 536 RWYAKDYNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEAS-PDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITG 614 (693)
T ss_pred ceeeeeeEEecccccccCCCCHHHHHHHHHhcCCEEEEEEec-hhhhcCCCccccCcccccccccCCccccccccccccc
Confidence 22345555553 2468889999876 9999999997 68999999999852 632
Q ss_pred --CCCcEEEEEEEeecC-CCc--cEEEEEcCCCCCCCCCceEEEEeCCCcccccCccceec
Q 018968 292 --QLDHAVTIVGFGTTE-DGA--NYWLIKNSWGDTWGDAGYMKILRDEGLCGIGTQSSYPL 347 (348)
Q Consensus 292 --~~~Hav~iVGyg~~~-~g~--~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~yp~ 347 (348)
.++|||+|||||.+. +|. +|||||||||++||++|||||+|+.|.|||++.++|+.
T Consensus 615 ~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGIEs~a~~~~ 675 (693)
T PTZ00049 615 WEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFIE 675 (693)
T ss_pred cccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCCCccCCccceeEEe
Confidence 369999999999753 453 79999999999999999999999999999999999864
No 13
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=1.9e-50 Score=348.73 Aligned_cols=167 Identities=56% Similarity=1.103 Sum_probs=149.4
Q ss_pred CCCeeecCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHhCCCCcCCCHHHHhhhcCCCCCCCCCCcHHHHHHHHHHcC
Q 018968 136 VPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTNGNNGCGGGTMEKAFEYIIQNQ 215 (348)
Q Consensus 136 lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~~gc~GG~~~~a~~~~~~~~ 215 (348)
||++||||+.++++||+||+.||+|||||+++++|+++++++++.++||+|+|++|....+.+|+||++..|++|+.++.
T Consensus 1 lP~~~D~R~~~~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~~~~gC~GG~~~~a~~~~~~~~ 80 (174)
T smart00645 1 LPESFDWRKKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTGGNNGCNGGLPDNAFEYIKKNG 80 (174)
T ss_pred CCCcCcccccCCCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCCCCCCCCCcCHHHHHHHHHHcC
Confidence 69999999999999999999999999999999999999999998999999999999874356899999999999998866
Q ss_pred CCCCCCCCCCccCCCccchhhccccccccceEEcCCchHHHHHHHHHcCCeEEEEEeccccccccCCceEecC-CCC-CC
Q 018968 216 GIATEDEYPYQAVQGTCSAAQKAAAAKISNYEEVPSGDEQALLKAVSMQPVSIGIAAYTTEFKSYKEGIFNGV-CGT-QL 293 (348)
Q Consensus 216 Gi~~e~~yPY~~~~~~c~~~~~~~~~~i~~y~~~~~~~~~~i~~al~~GPV~v~~~~~~~~f~~y~~Giy~~~-~~~-~~ 293 (348)
|+++|++|||.. ++.+.+. +|+.|++|||+.+ |+. .+
T Consensus 81 Gi~~e~~~PY~~---------------------------------------~~~~~~~--~f~~Y~~Gi~~~~~~~~~~~ 119 (174)
T smart00645 81 GLETESCYPYTG---------------------------------------SVAIDAS--DFQFYKSGIYDHPGCGSGTL 119 (174)
T ss_pred CcccccccCccc---------------------------------------EEEEEcc--cccCCcCeEECCCCCCCCcc
Confidence 899999999975 4455554 6999999999884 764 37
Q ss_pred CcEEEEEEEeecCCCccEEEEEcCCCCCCCCCceEEEEeCC-CcccccCcc
Q 018968 294 DHAVTIVGFGTTEDGANYWLIKNSWGDTWGDAGYMKILRDE-GLCGIGTQS 343 (348)
Q Consensus 294 ~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~-~~Cgi~~~~ 343 (348)
+|+|+|||||.+.++++|||||||||+.|||+|||||+|+. |.|||+...
T Consensus 120 ~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~~ 170 (174)
T smart00645 120 DHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASV 170 (174)
T ss_pred cEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceeee
Confidence 99999999998647889999999999999999999999997 999995543
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=5e-47 Score=339.54 Aligned_cols=197 Identities=34% Similarity=0.633 Sum_probs=169.6
Q ss_pred eeecCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHhCC--CCcCCCHHHHhhhcCCC----CCCCCCCcHHHHHH-HH
Q 018968 139 SLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGA--NLIQLSEQQLVDCSTNG----NNGCGGGTMEKAFE-YI 211 (348)
Q Consensus 139 ~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~--~~~~lS~q~l~dc~~~~----~~gc~GG~~~~a~~-~~ 211 (348)
.+|||+.+ ++||+|||.||+|||||+++++|++++++.. +.++||+|+|++|.... ..+|.||.+..++. ++
T Consensus 1 ~~d~r~~~-~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~ 79 (223)
T cd02619 1 SVDLRPLR-LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLV 79 (223)
T ss_pred CCcchhcC-CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHH
Confidence 47999998 9999999999999999999999999999987 88999999999998762 26899999999998 77
Q ss_pred HHcCCCCCCCCCCCccCCCccchh----hccccccccceEEcCCchHHHHHHHHHc-CCeEEEEEeccccccccCCceEe
Q 018968 212 IQNQGIATEDEYPYQAVQGTCSAA----QKAAAAKISNYEEVPSGDEQALLKAVSM-QPVSIGIAAYTTEFKSYKEGIFN 286 (348)
Q Consensus 212 ~~~~Gi~~e~~yPY~~~~~~c~~~----~~~~~~~i~~y~~~~~~~~~~i~~al~~-GPV~v~~~~~~~~f~~y~~Giy~ 286 (348)
..+ |+++|++|||......|... ......++.+|..+...++++||++|.+ |||++++.+. ..|..|++|++.
T Consensus 80 ~~~-Gi~~e~~~Py~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~-~~~~~~~~~~~~ 157 (223)
T cd02619 80 ALK-GIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVY-SGFDRLKEGIIY 157 (223)
T ss_pred HHc-CCCccccCCCCCCCCCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcc-cchhcccCcccc
Confidence 666 99999999999887776532 3445688999999987778999999987 9999999998 799999999873
Q ss_pred -----c-CC-CCCCCcEEEEEEEeecC-CCccEEEEEcCCCCCCCCCceEEEEeCCCcccc
Q 018968 287 -----G-VC-GTQLDHAVTIVGFGTTE-DGANYWLIKNSWGDTWGDAGYMKILRDEGLCGI 339 (348)
Q Consensus 287 -----~-~~-~~~~~Hav~iVGyg~~~-~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi 339 (348)
. .+ ....+|||+|||||++. .+++|||||||||++||++||+||+++ ..|.+
T Consensus 158 ~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~-~~~~~ 217 (223)
T cd02619 158 EEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYE-DVYEM 217 (223)
T ss_pred ccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehh-hhhhh
Confidence 1 22 24579999999999872 278999999999999999999999997 44443
No 15
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=2.7e-45 Score=373.00 Aligned_cols=198 Identities=26% Similarity=0.489 Sum_probs=160.0
Q ss_pred CCccCCCCCCcchHHHHHHHHHHHHHHHhCCCCcCCCHHHHhhhcCC-CCCCCCCCc-HHHHHHHHHHcCCCCCCCCCCC
Q 018968 148 VTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVDCSTN-GNNGCGGGT-MEKAFEYIIQNQGIATEDEYPY 225 (348)
Q Consensus 148 v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~-~~~gc~GG~-~~~a~~~~~~~~Gi~~e~~yPY 225 (348)
..||+|||.||+|||||+++++|++++++++..+.||+|+|+||+.. ++.+|.||+ +..++.|+.+++|+++|++|||
T Consensus 544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPY 623 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLY 623 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCC
Confidence 57999999999999999999999999999999999999999999864 468999997 4456689888867899999999
Q ss_pred cc--CCCccchhhc------------------cccccccceEEcCCc----h----HHHHHHHHHc-CCeEEEEEecccc
Q 018968 226 QA--VQGTCSAAQK------------------AAAAKISNYEEVPSG----D----EQALLKAVSM-QPVSIGIAAYTTE 276 (348)
Q Consensus 226 ~~--~~~~c~~~~~------------------~~~~~i~~y~~~~~~----~----~~~i~~al~~-GPV~v~~~~~~~~ 276 (348)
.. ..+.|+.... .....+.+|..+... + +++|+++|++ |||+|+|++. +
T Consensus 624 t~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAs--d 701 (1004)
T PTZ00462 624 NYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAE--N 701 (1004)
T ss_pred ccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEee--h
Confidence 75 4567864311 012234566665431 1 3688999987 9999999985 6
Q ss_pred ccccC-CceEec-CCCC-CCCcEEEEEEEeecC----CCccEEEEEcCCCCCCCCCceEEEEe-CCCcccccCccceec
Q 018968 277 FKSYK-EGIFNG-VCGT-QLDHAVTIVGFGTTE----DGANYWLIKNSWGDTWGDAGYMKILR-DEGLCGIGTQSSYPL 347 (348)
Q Consensus 277 f~~y~-~Giy~~-~~~~-~~~Hav~iVGyg~~~----~g~~ywivkNSWG~~WG~~Gy~~i~~-~~~~Cgi~~~~~yp~ 347 (348)
|+.|. +|||.. .|+. .++|||+|||||.+. .+++|||||||||+.|||+|||||.| +.+.|||+....+|+
T Consensus 702 f~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n~CGin~i~t~~~ 780 (1004)
T PTZ00462 702 VLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCEDNFIHSVVI 780 (1004)
T ss_pred HHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCCCCCccchheeeee
Confidence 88885 898654 5874 579999999999741 36799999999999999999999998 689999987666654
No 16
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=100.00 E-value=8.1e-43 Score=311.62 Aligned_cols=261 Identities=28% Similarity=0.515 Sum_probs=202.7
Q ss_pred HHHHHHHhCCCCceEEE-cccCCCCCHHHHHHhhhccCCCCCCCCCCCCccccccCCC-CCCCCCeeecCCC--CCCCcc
Q 018968 76 EYIEKANKEGNRTYKLG-TNRFSDLTNDEFRALYTGYKMPSPSHRSTTSSTFKYQNLS-MTDVPTSLDWRDK--KAVTPI 151 (348)
Q Consensus 76 ~~I~~~N~~~~~s~~~g-~N~faDlt~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lP~~~Dwr~~--g~v~pV 151 (348)
++|+++|.. +.+|+++ +.+|..||.++-.+..+|..+|...-..+. -.+..+. ..+||+.||-|++ +.+.|+
T Consensus 151 d~iE~in~G-~YgW~A~NYSaFWGmtL~DGiKyRLGTL~Ps~sv~nMN---Ei~~~l~p~~~LPE~F~As~KWp~liH~p 226 (470)
T KOG1544|consen 151 DMIEAINQG-NYGWQAGNYSAFWGMTLDDGIKYRLGTLRPSSSVMNMN---EIYTVLNPGEVLPEAFEASEKWPNLIHEP 226 (470)
T ss_pred HHHHHHhcC-CccccccchhhhhcccccccceeeecccCchhhhhhHH---hHhhccCcccccchhhhhhhcCCccccCc
Confidence 488999974 5889887 569999999988777777665543211100 0111122 2589999999987 889999
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHhCCC--CcCCCHHHHhhhcCCCCCCCCCCcHHHHHHHHHHcCCCCCCCCCCCccC-
Q 018968 152 KDQQECGCCWAFSAVAAVEGITKISGAN--LIQLSEQQLVDCSTNGNNGCGGGTMEKAFEYIIQNQGIATEDEYPYQAV- 228 (348)
Q Consensus 152 ~dQg~cGsCwAfA~~~~le~~~~~~~~~--~~~lS~q~l~dc~~~~~~gc~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~- 228 (348)
.|||+|++.|||+++++...+++|+... ...||+|+|++|.....+||.||..+.|+-|+.+. |++...||||...
T Consensus 227 lDQgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~gG~lDRAWWYlRKr-GvVsdhCYP~~~dQ 305 (470)
T KOG1544|consen 227 LDQGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRGGRLDRAWWYLRKR-GVVSDHCYPFSGDQ 305 (470)
T ss_pred cccCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhhhhccCccCcccchheeeecc-cccccccccccCCC
Confidence 9999999999999999998888887643 46799999999988767899999999999999888 9999999999742
Q ss_pred ---CCccch------------------h--hccccccccceEEcCCchHHHHHHHHH-cCCeEEEEEeccccccccCCce
Q 018968 229 ---QGTCSA------------------A--QKAAAAKISNYEEVPSGDEQALLKAVS-MQPVSIGIAAYTTEFKSYKEGI 284 (348)
Q Consensus 229 ---~~~c~~------------------~--~~~~~~~i~~y~~~~~~~~~~i~~al~-~GPV~v~~~~~~~~f~~y~~Gi 284 (348)
.+.|.. . .+...++.+.-+.+. .++++|++.|+ +|||-+.+.+. ++|..|++||
T Consensus 306 ~~~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVS-SnE~eImkElM~NGPVQA~m~VH-EDFF~YkgGi 383 (470)
T KOG1544|consen 306 AGPAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVS-SNEKEIMKELMENGPVQALMEVH-EDFFLYKGGI 383 (470)
T ss_pred CCCCCCceeeccccCcccccccCcCCCcccccCceeeecCCeecc-CCHHHHHHHHHhCCChhhhhhhh-hhhhhhccce
Confidence 233422 1 111233344444554 36777777765 59999999888 9999999999
Q ss_pred EecCCC---------CCCCcEEEEEEEeecC--CC--ccEEEEEcCCCCCCCCCceEEEEeCCCcccccCcc
Q 018968 285 FNGVCG---------TQLDHAVTIVGFGTTE--DG--ANYWLIKNSWGDTWGDAGYMKILRDEGLCGIGTQS 343 (348)
Q Consensus 285 y~~~~~---------~~~~Hav~iVGyg~~~--~g--~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~ 343 (348)
|.+... ..+.|+|.|.|||++. +| .+||+..||||+.|||+|||||-|+.|.|.|++..
T Consensus 384 Y~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNecdIEsfv 455 (470)
T KOG1544|consen 384 YSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNECDIESFV 455 (470)
T ss_pred eeccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccccchhhhHhh
Confidence 987421 2468999999999873 23 47999999999999999999999999999999865
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.4e-31 Score=242.89 Aligned_cols=196 Identities=25% Similarity=0.419 Sum_probs=135.3
Q ss_pred CCCCeeecCCCCCCCccCCCCCCcchHHHHHHHHHHHHHHHhCCCCcCCCHHHHhh-----hcCCCC-CCCCCCcHHHHH
Q 018968 135 DVPTSLDWRDKKAVTPIKDQQECGCCWAFSAVAAVEGITKISGANLIQLSEQQLVD-----CSTNGN-NGCGGGTMEKAF 208 (348)
Q Consensus 135 ~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~d-----c~~~~~-~gc~GG~~~~a~ 208 (348)
.+|+.||||+.|.|+||||||.||+||||++++++|+.+.-.. ..++|+..+.. |..... ..-+||....+.
T Consensus 98 s~~~~fd~r~~g~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m~~ 175 (372)
T COG4870 98 SLPSYFDRRDEGKVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGGNADMSA 175 (372)
T ss_pred cchhheeeeccCCcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCCcccccc
Confidence 5899999999999999999999999999999999999765433 34555554432 221111 113488888888
Q ss_pred HHHHHcCCCCCCCCCCCccCCCccchhhccccccccceEEcCCc----hHHHHHHHHHc-CCeEEEEEeccccccccCCc
Q 018968 209 EYIIQNQGIATEDEYPYQAVQGTCSAAQKAAAAKISNYEEVPSG----DEQALLKAVSM-QPVSIGIAAYTTEFKSYKEG 283 (348)
Q Consensus 209 ~~~~~~~Gi~~e~~yPY~~~~~~c~~~~~~~~~~i~~y~~~~~~----~~~~i~~al~~-GPV~v~~~~~~~~f~~y~~G 283 (348)
.|+.++.|.+.|.+-||......|.... +...++..-..++.. +.-.|++++.. |-+...+.+....+....-+
T Consensus 176 a~l~e~sgpv~et~d~y~~~s~~~~~~~-p~~k~~~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~~~~~~~~~ 254 (372)
T COG4870 176 AYLTEWSGPVYETDDPYSENSYFSPTNL-PVTKHVQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDATNSLGICIP 254 (372)
T ss_pred ccccccCCcchhhcCccccccccCCcCC-chhhccccceecccchhhhcccchHHHHhhhccccceeEEecccccccccC
Confidence 8899999999999999998776665431 122233333333321 22336666654 65543333321233333333
Q ss_pred eEecCCCCCCCcEEEEEEEeecC---------CCccEEEEEcCCCCCCCCCceEEEEeC
Q 018968 284 IFNGVCGTQLDHAVTIVGFGTTE---------DGANYWLIKNSWGDTWGDAGYMKILRD 333 (348)
Q Consensus 284 iy~~~~~~~~~Hav~iVGyg~~~---------~g~~ywivkNSWG~~WG~~Gy~~i~~~ 333 (348)
.+........+|||+||||+|.. .|.++||||||||++||++|||||++.
T Consensus 255 ~~~~~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~ 313 (372)
T COG4870 255 YPYVDSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYY 313 (372)
T ss_pred CCCCCccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEee
Confidence 44333336789999999999872 467899999999999999999999997
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.92 E-value=4.8e-25 Score=212.74 Aligned_cols=182 Identities=23% Similarity=0.427 Sum_probs=130.3
Q ss_pred CccCCCCCCcchHHHHHHHHHHHHHHHh-CCCCcCCCHHHHhh----------------hcCC-----------CCCCCC
Q 018968 149 TPIKDQQECGCCWAFSAVAAVEGITKIS-GANLIQLSEQQLVD----------------CSTN-----------GNNGCG 200 (348)
Q Consensus 149 ~pV~dQg~cGsCwAfA~~~~le~~~~~~-~~~~~~lS~q~l~d----------------c~~~-----------~~~gc~ 200 (348)
.||+||+..|.||.||+...|++.+.++ ..+.++||+.++.. +... .....+
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~D 134 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQND 134 (437)
T ss_pred CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCC
Confidence 4899999999999999999999988774 45789999988764 2111 245679
Q ss_pred CCcHHHHHHHHHHcCCCCCCCCCCCccCC---------------------------Cc--c---chh-------------
Q 018968 201 GGTMEKAFEYIIQNQGIATEDEYPYQAVQ---------------------------GT--C---SAA------------- 235 (348)
Q Consensus 201 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~---------------------------~~--c---~~~------------- 235 (348)
||....+...+.++ |+++++.||-+... +. . ...
T Consensus 135 GGqw~m~~~li~KY-GvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~~ 213 (437)
T cd00585 135 GGQWDMLVNLIEKY-GLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILAI 213 (437)
T ss_pred CCchHHHHHHHHHc-CCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887 99999999843100 00 0 000
Q ss_pred ---hcc-----------------------------ccccccceEEc---CC---------------------------ch
Q 018968 236 ---QKA-----------------------------AAAKISNYEEV---PS---------------------------GD 253 (348)
Q Consensus 236 ---~~~-----------------------------~~~~i~~y~~~---~~---------------------------~~ 253 (348)
..+ ......+|..| |. -.
T Consensus 214 ~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y~Nvp 293 (437)
T cd00585 214 ALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILYLNVP 293 (437)
T ss_pred HcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceEEecC
Confidence 000 00011222221 10 01
Q ss_pred HHHHH----HHHHc-CCeEEEEEeccccccccCCceEecC----------------------CCCCCCcEEEEEEEeecC
Q 018968 254 EQALL----KAVSM-QPVSIGIAAYTTEFKSYKEGIFNGV----------------------CGTQLDHAVTIVGFGTTE 306 (348)
Q Consensus 254 ~~~i~----~al~~-GPV~v~~~~~~~~f~~y~~Giy~~~----------------------~~~~~~Hav~iVGyg~~~ 306 (348)
.+.|+ ++|.. +||.+++++. .|..|++||++.. |.+..+|||+|||||.+.
T Consensus 294 ~d~l~~~~~~~L~~g~pV~~g~Dv~--~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~~D~ 371 (437)
T cd00585 294 MDVLKKAAIAQLKDGEPVWFGCDVG--KFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVDLDE 371 (437)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEcC--hhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEEecC
Confidence 34444 55667 5999999997 5779999999653 234468999999999875
Q ss_pred CCc-cEEEEEcCCCCCCCCCceEEEEeC
Q 018968 307 DGA-NYWLIKNSWGDTWGDAGYMKILRD 333 (348)
Q Consensus 307 ~g~-~ywivkNSWG~~WG~~Gy~~i~~~ 333 (348)
+|+ .||+||||||+.||++||++|+++
T Consensus 372 ~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 372 DGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred CCCcceEEEEcccCCCCCCCcceehhHH
Confidence 676 699999999999999999999976
No 19
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.76 E-value=1.4e-17 Score=161.13 Aligned_cols=182 Identities=26% Similarity=0.449 Sum_probs=109.5
Q ss_pred CccCCCCCCcchHHHHHHHHHHHHHHHhCC-CCcCCCHHHHh----------------hhcCC-----------CCCCCC
Q 018968 149 TPIKDQQECGCCWAFSAVAAVEGITKISGA-NLIQLSEQQLV----------------DCSTN-----------GNNGCG 200 (348)
Q Consensus 149 ~pV~dQg~cGsCwAfA~~~~le~~~~~~~~-~~~~lS~q~l~----------------dc~~~-----------~~~gc~ 200 (348)
.||.||...|.||.||+...++..+.++.+ +.++||+.++. ++... .....+
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~D 135 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSD 135 (438)
T ss_dssp -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S
T ss_pred CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCC
Confidence 499999999999999999999999888775 78999999875 22221 134578
Q ss_pred CCcHHHHHHHHHHcCCCCCCCCCCCccCC---------------------------Cc----------------------
Q 018968 201 GGTMEKAFEYIIQNQGIATEDEYPYQAVQ---------------------------GT---------------------- 231 (348)
Q Consensus 201 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~---------------------------~~---------------------- 231 (348)
||....+...+.++ |+|+.+.||-+... +.
T Consensus 136 GGqw~~~~nli~KY-GvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~ 214 (438)
T PF03051_consen 136 GGQWDMVVNLIKKY-GVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAI 214 (438)
T ss_dssp -B-HHHHHHHHHHH----BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHc-CcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887 99999999843100 00
Q ss_pred ----cchh------------------------hccccccccceEEc---C--C-------------------------ch
Q 018968 232 ----CSAA------------------------QKAAAAKISNYEEV---P--S-------------------------GD 253 (348)
Q Consensus 232 ----c~~~------------------------~~~~~~~i~~y~~~---~--~-------------------------~~ 253 (348)
++.. ..-......+|..| | . -.
T Consensus 215 ~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~ylNvp 294 (438)
T PF03051_consen 215 YLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYLNVP 294 (438)
T ss_dssp HH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEEE--
T ss_pred HcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEeccC
Confidence 0000 00000011222221 1 0 01
Q ss_pred HHHHH----HHHHcC-CeEEEEEeccccccccCCceEecCC----------------------CCCCCcEEEEEEEeecC
Q 018968 254 EQALL----KAVSMQ-PVSIGIAAYTTEFKSYKEGIFNGVC----------------------GTQLDHAVTIVGFGTTE 306 (348)
Q Consensus 254 ~~~i~----~al~~G-PV~v~~~~~~~~f~~y~~Giy~~~~----------------------~~~~~Hav~iVGyg~~~ 306 (348)
.+.|+ ++|..| ||..+.++. . +..-+.||.+... .+..+|||+|||.+.+.
T Consensus 295 id~lk~~~i~~Lk~G~~VwfgcDV~-k-~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~ 372 (438)
T PF03051_consen 295 IDELKDAAIKSLKAGYPVWFGCDVG-K-FFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDE 372 (438)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEETT-T-TEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-T
T ss_pred HHHHHHHHHHHHHcCCcEEEeccCC-c-cccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEecc
Confidence 34444 445667 999999997 4 4566789886521 12347999999999876
Q ss_pred CCc-cEEEEEcCCCCCCCCCceEEEEeC
Q 018968 307 DGA-NYWLIKNSWGDTWGDAGYMKILRD 333 (348)
Q Consensus 307 ~g~-~ywivkNSWG~~WG~~Gy~~i~~~ 333 (348)
+|+ .+|+|+||||++.|.+||+.|+.+
T Consensus 373 ~g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 373 DGKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp TSSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred CCCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 776 599999999999999999999854
No 20
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.72 E-value=1.8e-17 Score=116.55 Aligned_cols=58 Identities=53% Similarity=0.848 Sum_probs=51.9
Q ss_pred HHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcccCCCCCHHHH
Q 018968 47 HEKWMAQHGRSYKDELEKEMRFKIFKENLEYIEKANKEGNRTYKLGTNRFSDLTNDEF 104 (348)
Q Consensus 47 f~~~~~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~s~~~g~N~faDlt~~E~ 104 (348)
|++|+++|+|.|.+++|+.+|+.+|++|++.|.+||+.++.+|++|+|+|+|||++||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence 8999999999999999999999999999999999997777999999999999999997
No 21
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.56 E-value=4.7e-15 Score=103.84 Aligned_cols=57 Identities=51% Similarity=0.908 Sum_probs=53.9
Q ss_pred HHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcccCCCCCHHH
Q 018968 47 HEKWMAQHGRSYKDELEKEMRFKIFKENLEYIEKANKEGNRTYKLGTNRFSDLTNDE 103 (348)
Q Consensus 47 f~~~~~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~s~~~g~N~faDlt~~E 103 (348)
|++|+++|+|.|.+.+|+..|+.+|.+|++.|..||+.+..+|++|+|+|+|||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence 689999999999999999999999999999999999887789999999999999876
No 22
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=99.32 E-value=4.2e-12 Score=115.56 Aligned_cols=75 Identities=17% Similarity=0.309 Sum_probs=56.6
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHHHhCC-CCcCCCHHHHhhhcC----------------C-----------CCCCCCC
Q 018968 150 PIKDQQECGCCWAFSAVAAVEGITKISGA-NLIQLSEQQLVDCST----------------N-----------GNNGCGG 201 (348)
Q Consensus 150 pV~dQg~cGsCwAfA~~~~le~~~~~~~~-~~~~lS~q~l~dc~~----------------~-----------~~~gc~G 201 (348)
||.||...|.||.||+...+.-.+...-+ +.+.||..++...+. . ....-+|
T Consensus 59 ~vtNQk~SGRCWmFAAlNtfRhk~~~el~le~fElSQaytfFwDKlEKaN~FleqIi~tadq~ldsRlv~~LL~~PqqDG 138 (444)
T COG3579 59 KVTNQKQSGRCWMFAALNTFRHKLISELKLEDFELSQAYTFFWDKLEKANWFLEQIIETADQELDSRLVSFLLATPQQDG 138 (444)
T ss_pred ccccccccceehHHHHHHHHHHHHHHhcCcceeehhhHHHHHHHHHHHhhHHHHHHHhhcccchHHHHHHHHHcCccccC
Confidence 89999999999999999988766554443 567888876542111 0 2455689
Q ss_pred CcHHHHHHHHHHcCCCCCCCCCCC
Q 018968 202 GTMEKAFEYIIQNQGIATEDEYPY 225 (348)
Q Consensus 202 G~~~~a~~~~~~~~Gi~~e~~yPY 225 (348)
|-.......+.++ |+++.++||-
T Consensus 139 GQwdM~v~l~eKY-GvVpK~~ype 161 (444)
T COG3579 139 GQWDMFVSLFEKY-GVVPKSVYPE 161 (444)
T ss_pred chHHHHHHHHHHh-CCCchhhccc
Confidence 9888888877776 9999999984
No 23
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=98.21 E-value=1.9e-06 Score=78.91 Aligned_cols=75 Identities=20% Similarity=0.350 Sum_probs=57.5
Q ss_pred CccCCCCCCcchHHHHHHHHHHHHHHHhCC-CCcCCCHHHHhh--------------------hcCC---------CCCC
Q 018968 149 TPIKDQQECGCCWAFSAVAAVEGITKISGA-NLIQLSEQQLVD--------------------CSTN---------GNNG 198 (348)
Q Consensus 149 ~pV~dQg~cGsCwAfA~~~~le~~~~~~~~-~~~~lS~q~l~d--------------------c~~~---------~~~g 198 (348)
+||.||...|-||.|+.+..+.--+.++-+ ..+.||..+|+. |... .+..
T Consensus 63 ~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP~ 142 (457)
T KOG4128|consen 63 QPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNPV 142 (457)
T ss_pred cccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCCC
Confidence 699999999999999999987665555443 568899988752 2211 2444
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCCCCC
Q 018968 199 CGGGTMEKAFEYIIQNQGIATEDEYP 224 (348)
Q Consensus 199 c~GG~~~~a~~~~~~~~Gi~~e~~yP 224 (348)
-+||.....++.++++ |+.+..|||
T Consensus 143 ~DGGqw~MfvNlVkKY-GviPKkcy~ 167 (457)
T KOG4128|consen 143 PDGGQWQMFVNLVKKY-GVIPKKCYL 167 (457)
T ss_pred CCCchHHHHHHHHHHh-CCCcHHhcc
Confidence 5799988888888777 999999996
No 24
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=97.15 E-value=0.0054 Score=49.94 Aligned_cols=57 Identities=19% Similarity=0.416 Sum_probs=34.2
Q ss_pred chHHHHHHHHHcC-CeEEEEEeccccccccCCceEecCCCCCCCcEEEEEEEeecCCCccEEEEEcCC
Q 018968 252 GDEQALLKAVSMQ-PVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSW 318 (348)
Q Consensus 252 ~~~~~i~~al~~G-PV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSW 318 (348)
.+.+.|+++|.+| ||.+.+....... .+..+. ....+|.|+|+||+.+ + +++|-.+|
T Consensus 87 ~~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~---~~~~~H~vvi~Gy~~~--~--~~~v~DP~ 144 (144)
T PF13529_consen 87 ASFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYD---GTYGGHYVVIIGYDED--G--YVYVNDPW 144 (144)
T ss_dssp S-HHHHHHHHHTT--EEEEEETTSS-----TTEEEE---E-TTEEEEEEEEE-SS--E---EEEE-TT
T ss_pred CcHHHHHHHHHCCCcEEEEEEcccccC---CCCCcC---CCcCCEEEEEEEEeCC--C--EEEEeCCC
Confidence 4678999999996 9999886431111 111221 2456899999999875 1 78887777
No 25
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=96.97 E-value=0.0073 Score=51.19 Aligned_cols=121 Identities=19% Similarity=0.288 Sum_probs=66.9
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHh--------CCCCcCCCHHHHhhhcCCCCCCCCCCcHHHHHHHHHHcCCCCCCCCC
Q 018968 152 KDQQECGCCWAFSAVAAVEGITKIS--------GANLIQLSEQQLVDCSTNGNNGCGGGTMEKAFEYIIQNQGIATEDEY 223 (348)
Q Consensus 152 ~dQg~cGsCwAfA~~~~le~~~~~~--------~~~~~~lS~q~l~dc~~~~~~gc~GG~~~~a~~~~~~~~Gi~~e~~y 223 (348)
..||.-+-|-+||.+++|-...... ..-...+|+++|.+++. .+.+.++|.+.. |....
T Consensus 17 EtQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~---------~~~~~i~y~ks~-g~~~~--- 83 (175)
T PF05543_consen 17 ETQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSL---------TPNQMIKYAKSQ-GRNPQ--- 83 (175)
T ss_dssp ---SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B----------HHHHHHHHHHT-TEEEE---
T ss_pred eccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCC---------CHHHHHHHHHHc-Ccchh---
Confidence 3589999999999999887542211 11124566777766542 245677776554 32110
Q ss_pred CCccCCCccchhhccccccccceEEcCCchHHHHHHHHHc-CCeEEEEEeccccccccCCceEecCCCCCCCcEEEEEEE
Q 018968 224 PYQAVQGTCSAAQKAAAAKISNYEEVPSGDEQALLKAVSM-QPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGF 302 (348)
Q Consensus 224 PY~~~~~~c~~~~~~~~~~i~~y~~~~~~~~~~i~~al~~-GPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGy 302 (348)
-....+ +-+++++.+.+ -|+.+..+... ...+...+|||+||||
T Consensus 84 ---------------------~~n~~~--s~~eV~~~~~~nk~i~i~~~~v~------------~~~~~~~gHAlavvGy 128 (175)
T PF05543_consen 84 ---------------------YNNRMP--SFDEVKKLIDNNKGIAILADRVE------------QTNGPHAGHALAVVGY 128 (175)
T ss_dssp ---------------------EECS-----HHHHHHHHHTT-EEEEEEEETT------------SCTTB--EEEEEEEEE
T ss_pred ---------------------HhcCCC--CHHHHHHHHHcCCCeEEEecccc------------cCCCCccceeEEEEee
Confidence 001111 46778888876 57777555431 0123467899999999
Q ss_pred eecCCCccEEEEEcCCCC
Q 018968 303 GTTEDGANYWLIKNSWGD 320 (348)
Q Consensus 303 g~~~~g~~ywivkNSWG~ 320 (348)
-.-.+|.++.++=|-|-.
T Consensus 129 a~~~~g~~~y~~WNPW~~ 146 (175)
T PF05543_consen 129 AKPNNGQKTYYFWNPWWN 146 (175)
T ss_dssp EEETTSEEEEEEE-TT-S
T ss_pred eecCCCCeEEEEeCCccC
Confidence 875577999999888853
No 26
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=96.64 E-value=0.0028 Score=40.71 Aligned_cols=36 Identities=31% Similarity=0.460 Sum_probs=22.8
Q ss_pred HHHHHHHHhCCCCceEEEcccCCCCCHHHHHHhhhccCC
Q 018968 75 LEYIEKANKEGNRTYKLGTNRFSDLTNDEFRALYTGYKM 113 (348)
Q Consensus 75 ~~~I~~~N~~~~~s~~~g~N~faDlt~~E~~~~~~~~~~ 113 (348)
-++|+.+|+. +.+|++|.| |.+.+.++++++ +|..+
T Consensus 3 de~I~~IN~~-~~tWkAG~N-F~~~~~~~ik~L-lGv~~ 38 (41)
T PF08127_consen 3 DEFIDYINSK-NTTWKAGRN-FENTSIEYIKRL-LGVLP 38 (41)
T ss_dssp HHHHHHHHHC-T-SEEE-----SSB-HHHHHHC-S-B-T
T ss_pred HHHHHHHHcC-CCcccCCCC-CCCCCHHHHHHH-cCCCC
Confidence 4689999998 699999999 899999988764 46544
No 27
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=89.82 E-value=0.88 Score=42.66 Aligned_cols=55 Identities=16% Similarity=0.404 Sum_probs=36.4
Q ss_pred HHHHHHHHHcC-CeEEEEEeccccccccCCceEecCCCCCCCcEEEEEEEeecCCCccEEEEEc
Q 018968 254 EQALLKAVSMQ-PVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKN 316 (348)
Q Consensus 254 ~~~i~~al~~G-PV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~~~g~~ywivkN 316 (348)
.+.|+++|.+| ||.+.++.+ +..|...-| .....+|.|+|+||+++ +..+.++-+
T Consensus 78 ~~~l~~~l~~g~pv~~~~D~~---~lpy~~~~~---~~~~~~H~i~v~G~d~~--~~~~~v~D~ 133 (317)
T PF14399_consen 78 WEELKEALDAGRPVIVWVDMY---YLPYRPNYY---KKHHADHYIVVYGYDEE--EDVFYVSDP 133 (317)
T ss_pred HHHHHHHHhCCCceEEEeccc---cCCCCcccc---ccccCCcEEEEEEEeCC--CCEEEEEcC
Confidence 45678888887 999998776 334443222 12346899999999875 345666533
No 28
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.72 E-value=2 Score=36.70 Aligned_cols=52 Identities=19% Similarity=0.292 Sum_probs=36.5
Q ss_pred EEcCCchHHHHHHHHHcC-CeEEEEEeccccccccCCceEecCCCCCCCcEEEEEEEeecCCCccEEEEEcCCC
Q 018968 247 EEVPSGDEQALLKAVSMQ-PVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWG 319 (348)
Q Consensus 247 ~~~~~~~~~~i~~al~~G-PV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG 319 (348)
..+...+..+|+..|.+| ||.+-... |.. ..-|+|+|.||++. ++..-++||
T Consensus 116 ~d~tGksl~~ik~ql~kg~PV~iw~T~----~~~------------~s~H~v~itgyDk~-----n~yynDpyG 168 (195)
T COG4990 116 VDLTGKSLSDIKGQLLKGRPVVIWVTN----FHS------------YSIHSVLITGYDKY-----NIYYNDPYG 168 (195)
T ss_pred ccCcCCcHHHHHHHHhcCCcEEEEEec----ccc------------cceeeeEeeccccc-----ceEeccccc
Confidence 445567899999999886 99875433 322 23599999999864 455557775
No 29
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=76.78 E-value=35 Score=28.73 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=27.2
Q ss_pred hHHHHHHHHHc-CCeEEEEEeccccccccCCceEecCCCCCCCcEEEEEEEeec
Q 018968 253 DEQALLKAVSM-QPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTT 305 (348)
Q Consensus 253 ~~~~i~~al~~-GPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~ 305 (348)
+.+.+...|.+ ||+-++.... .+....|+++|.|-+.+
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~P---------------~~~~~~H~~ViTGI~~d 135 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEAP---------------GDSWVAHASVITGIDGD 135 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecCC---------------CCcceeeEEEEEeecCC
Confidence 46778888877 9999885443 12334699999998754
No 30
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=69.53 E-value=14 Score=29.72 Aligned_cols=44 Identities=20% Similarity=0.362 Sum_probs=28.7
Q ss_pred HHHHHHcC-CeEEEEEeccccccccCCceEecCCCCCCCcEEEEEEEeecCCCccEEEEEcCC
Q 018968 257 LLKAVSMQ-PVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSW 318 (348)
Q Consensus 257 i~~al~~G-PV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSW 318 (348)
+++.+..| ||.+.+... ......+|.|+|+||+. .+..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~~--------------~~~~~~gH~vVv~g~~~----~~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNLG--------------VSITPSGHAMVVIGYDR----KGNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEecC--------------cccCCCCeEEEEEEEcC----CCCEEEECCC
Confidence 77778775 998876541 11234689999999971 1235566765
No 31
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=69.19 E-value=18 Score=34.09 Aligned_cols=40 Identities=23% Similarity=0.513 Sum_probs=32.4
Q ss_pred CCcEEEEEEEeecCC--CccEEEEEcCCCC-CC-------------------------CCCceEEEEeC
Q 018968 293 LDHAVTIVGFGTTED--GANYWLIKNSWGD-TW-------------------------GDAGYMKILRD 333 (348)
Q Consensus 293 ~~Hav~iVGyg~~~~--g~~ywivkNSWG~-~W-------------------------G~~Gy~~i~~~ 333 (348)
.+||-.|++...- + +.....+||.||. .| .++|-|||+.+
T Consensus 235 ~~HaY~Vl~~~~~-~~~~~~lv~lrNPWg~~~w~G~ws~~~~~w~~~~~~~~~~~~~~~~dG~Fwm~~~ 302 (315)
T cd00044 235 KGHAYSVLDVREV-QEEGLRLLRLRNPWGVGEWWGGWSDDSSEWWVIDAERKKLLLSGKDDGEFWMSFE 302 (315)
T ss_pred cCcceEEeEEEEE-ccCceEEEEecCCccCCCccCCCCCCCchhccChHHHHHhcCCCCCCCEEEEEhH
Confidence 4899999999875 4 7889999999994 22 26799999876
No 32
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=67.41 E-value=18 Score=32.09 Aligned_cols=58 Identities=17% Similarity=0.330 Sum_probs=34.1
Q ss_pred hHHHHHHHHHc-CCeEEEEEeccccccc---cCCceEec---CC----CCCCCcEEEEEEEeecCCCccEEEEEc
Q 018968 253 DEQALLKAVSM-QPVSIGIAAYTTEFKS---YKEGIFNG---VC----GTQLDHAVTIVGFGTTEDGANYWLIKN 316 (348)
Q Consensus 253 ~~~~i~~al~~-GPV~v~~~~~~~~f~~---y~~Giy~~---~~----~~~~~Hav~iVGyg~~~~g~~ywivkN 316 (348)
+.++|...|.. ||+.+-++.. ... -+.-.... .| ....+|=|+|+||+.+ .+-++++|
T Consensus 112 s~~ei~~hl~~g~~aIvLVd~~---~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~---~~~~~yrd 180 (212)
T PF09778_consen 112 SIQEIIEHLSSGGPAIVLVDAS---LLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAA---TKEFEYRD 180 (212)
T ss_pred cHHHHHHHHhCCCcEEEEEccc---cccChhhcccccccccccccCCCCCccEEEEEEEeecCC---CCeEEEeC
Confidence 47889999988 4666655544 221 02222211 11 1346899999999875 23456665
No 33
>KOG4702 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.13 E-value=49 Score=23.68 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=23.6
Q ss_pred HHHHHHHHHhCCccCChHHHHHHHHHHHHHHHH
Q 018968 45 EMHEKWMAQHGRSYKDELEKEMRFKIFKENLEY 77 (348)
Q Consensus 45 ~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~n~~~ 77 (348)
..|++|..+|++.-.+ .|...|..-|++-++.
T Consensus 29 e~Fee~v~~~krel~p-pe~~~~~EE~~~~lRe 60 (77)
T KOG4702|consen 29 EIFEEFVRGYKRELSP-PEATKRKEEYENFLRE 60 (77)
T ss_pred HHHHHHHHhccccCCC-hHHHhhHHHHHHHHHH
Confidence 3699999999999754 4666777766665554
No 34
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=49.88 E-value=83 Score=27.26 Aligned_cols=49 Identities=27% Similarity=0.625 Sum_probs=30.0
Q ss_pred HHHHHHHHc-CCeEEEEEeccccccccCCceEecCCCCCCCcEEEEEEEeecCCCccEEEEEcCCCCCCC--CCceEE
Q 018968 255 QALLKAVSM-QPVSIGIAAYTTEFKSYKEGIFNGVCGTQLDHAVTIVGFGTTEDGANYWLIKNSWGDTWG--DAGYMK 329 (348)
Q Consensus 255 ~~i~~al~~-GPV~v~~~~~~~~f~~y~~Giy~~~~~~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG--~~Gy~~ 329 (348)
+.|+..|.+ .||.+..... . .+||.+|=||..+ .|+-+ -|| || .+||++
T Consensus 141 ~~i~~el~~~rPV~~~g~~~-~-----------------~GHawViDGy~~~----~~~H~--NwG--W~G~~nGyy~ 192 (192)
T PF01640_consen 141 DMIRNELDNGRPVLYSGNSK-S-----------------GGHAWVIDGYDSD----GYFHC--NWG--WGGSSNGYYR 192 (192)
T ss_dssp HHHHHHHHTT--EEEEEEET-T-----------------EEEEEEEEEEESS----SEEEE--E-S--STTTT-EEEE
T ss_pred HHHHHHHHcCCCEEEEEecC-C-----------------CCeEEEEcCccCC----CeEEE--eeC--ccCCCCCccC
Confidence 567777877 4998654332 0 1899999999543 57766 355 54 569875
No 35
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=38.02 E-value=61 Score=30.57 Aligned_cols=27 Identities=22% Similarity=0.523 Sum_probs=21.8
Q ss_pred CCCcEEEEEEEeecCCCcc--EEEEEcCCC
Q 018968 292 QLDHAVTIVGFGTTEDGAN--YWLIKNSWG 319 (348)
Q Consensus 292 ~~~Hav~iVGyg~~~~g~~--ywivkNSWG 319 (348)
..+||-.|++...- ++.+ ...+||-||
T Consensus 226 v~~HaYsVl~v~~~-~~~~~~Ll~lrNPWg 254 (318)
T smart00230 226 VKGHAYSVTDVREV-QGRRQELLRLRNPWG 254 (318)
T ss_pred ccCccEEEEEEEEE-ecCCeEEEEEECCCC
Confidence 34899999998765 4445 899999998
No 36
>PF11873 DUF3393: Domain of unknown function (DUF3393); InterPro: IPR024570 Membrane-bound lytic murein transglycosylase C (also known as murein hydrolase C), is a murein-degrading enzyme that may play a role in the recycling of muropeptides during cell elongation and/or cell division. This entry represents the N-terminal domain, whose function is currently not known.
Probab=32.81 E-value=50 Score=29.10 Aligned_cols=18 Identities=28% Similarity=0.720 Sum_probs=11.6
Q ss_pred chHHHHHHHHHHHHHHhh
Q 018968 14 NTIPMFIIIILLVSCASQ 31 (348)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~ 31 (348)
..++++++++||.+|+..
T Consensus 2 k~l~~~~~~~lL~~Cs~~ 19 (204)
T PF11873_consen 2 KKLLLLLIALLLSGCSSE 19 (204)
T ss_pred cCHHHHHHHHHHHHhCCC
Confidence 345566666777788754
No 37
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=29.76 E-value=1.8e+02 Score=19.75 Aligned_cols=36 Identities=19% Similarity=0.438 Sum_probs=22.4
Q ss_pred EEEEEEEeecC-CCccEEEEE-cCCC---CCCCCCceEEEE
Q 018968 296 AVTIVGFGTTE-DGANYWLIK-NSWG---DTWGDAGYMKIL 331 (348)
Q Consensus 296 av~iVGyg~~~-~g~~ywivk-NSWG---~~WG~~Gy~~i~ 331 (348)
-++++|+.... ....+-++| |+=| ++||.+|..++.
T Consensus 13 kIlv~G~~~~~~~~~~~~l~Rln~DGsLDttFg~~G~v~~d 53 (55)
T TIGR02608 13 KILVAGYVDNSSGNNDFVLARLNADGSLDTTFGTGGKVTFD 53 (55)
T ss_pred cEEEEEEeecCCCcccEEEEEECCCCCccCCcCCCcEEEEe
Confidence 46778876542 122333333 6666 499999998875
No 38
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=26.78 E-value=40 Score=29.79 Aligned_cols=20 Identities=20% Similarity=0.708 Sum_probs=15.4
Q ss_pred echHHHHHHHHHHHHHHhhh
Q 018968 13 INTIPMFIIIILLVSCASQV 32 (348)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~ 32 (348)
|+.|.++++++++.+|+...
T Consensus 1 mk~i~~l~l~lll~~C~~~~ 20 (216)
T PF11153_consen 1 MKKILLLLLLLLLTGCSTNP 20 (216)
T ss_pred ChHHHHHHHHHHHHhhcCCC
Confidence 77788877778888887755
No 39
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=26.62 E-value=60 Score=24.87 Aligned_cols=6 Identities=0% Similarity=-0.086 Sum_probs=2.3
Q ss_pred echHHH
Q 018968 13 INTIPM 18 (348)
Q Consensus 13 ~~~~~~ 18 (348)
.++.+|
T Consensus 2 aSK~~l 7 (95)
T PF07172_consen 2 ASKAFL 7 (95)
T ss_pred chhHHH
Confidence 334333
No 40
>PF02723 NS3_envE: Non-structural protein NS3/Small envelope protein E; InterPro: IPR003873 This is a family of small nonstructural proteins, well conserved among Coronavirus strains. This protein is also found in Murine hepatitis virus as small envelope protein E.; GO: 0016020 membrane
Probab=24.40 E-value=1.2e+02 Score=22.61 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=16.6
Q ss_pred Ce-eeeeccCcceechHHHHHHH
Q 018968 1 MV-LIFERSGSFKINTIPMFIII 22 (348)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~~ 22 (348)
|. +.+.+.|-++.|.+.++++.
T Consensus 1 M~~l~~~dd~~lVvNiil~llvc 23 (82)
T PF02723_consen 1 MFDLVLIDDHGLVVNIILWLLVC 23 (82)
T ss_pred CcceEEecCceeehhHHHHHHHH
Confidence 44 67788899999999885444
No 41
>PF14940 TMEM219: Transmembrane 219
Probab=23.53 E-value=82 Score=28.19 Aligned_cols=47 Identities=9% Similarity=0.185 Sum_probs=28.5
Q ss_pred ceechHHHHHHHHHHHHHHhhhhc------ccCCchhHHHHHHHHHHHHhCCc
Q 018968 11 FKINTIPMFIIIILLVSCASQVVS------SRSTHEQSVVEMHEKWMAQHGRS 57 (348)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~f~~~~~~~~k~ 57 (348)
+..++=|++++.+.|++++..... ..+..++++.+.|..|...+++-
T Consensus 4 ~~~~rPPlVvF~l~Ll~~aI~~l~Lg~yi~~~~l~nPDi~~DWN~fL~~ls~l 56 (223)
T PF14940_consen 4 FLSSRPPLVVFTLCLLLLAISFLCLGYYIKRNELKNPDIPQDWNTFLLSLSQL 56 (223)
T ss_pred hhccCCCchHHHHHHHHHHHHHheeeeEecccCCCcccchhhHHHHHHhhcCe
Confidence 344555665555555554443221 12345678888899999998875
No 42
>COG2854 Ttg2D ABC-type transport system involved in resistance to organic solvents, auxiliary component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.47 E-value=2.8e+02 Score=24.37 Aligned_cols=60 Identities=10% Similarity=0.114 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcccCCCCCHHHHHH
Q 018968 41 QSVVEMHEKWMAQHGRSYKDELEKEMRFKIFKENLEYIEKANKEGNRTYKLGTNRFSDLTNDEFRA 106 (348)
Q Consensus 41 ~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~n~~~I~~~N~~~~~s~~~g~N~faDlt~~E~~~ 106 (348)
...++.|..-+..--+.-. ++...| ++..+-+--+ .+.+....+.|| +.+...|+++..+
T Consensus 35 ~~a~~~ls~lk~~~~~~k~--dp~~l~-~~v~~~l~p~--vd~~~~a~~vLG-k~~k~aspeQ~~~ 94 (202)
T COG2854 35 EAADKVLSILKNNQAKIKQ--DPQYLR-QIVDQELLPY--VDFKYAAKLVLG-KYYKTASPEQRQA 94 (202)
T ss_pred HHHHHHHHHHhccchhhcc--CHHHHH-HHHHHHhhhh--hcHHHHHHHHhc-cccccCCHHHHHH
Confidence 3556667766554332222 233333 3333222221 222222345677 7788888887643
No 43
>PF15588 Imm7: Immunity protein 7
Probab=21.98 E-value=2.6e+02 Score=22.02 Aligned_cols=33 Identities=30% Similarity=0.631 Sum_probs=24.2
Q ss_pred EEEEEEEeecC-CCccEEEEEcCC-----CCCCCCCceE
Q 018968 296 AVTIVGFGTTE-DGANYWLIKNSW-----GDTWGDAGYM 328 (348)
Q Consensus 296 av~iVGyg~~~-~g~~ywivkNSW-----G~~WG~~Gy~ 328 (348)
-|++||+++++ +.+.|.|++.+- ...=|.+||.
T Consensus 17 ~v~~vG~ADd~~~~~~yiilQR~~~~de~D~~~~~d~~~ 55 (115)
T PF15588_consen 17 NVLMVGFADDEDGPKEYIILQRSLEFDEQDEDLGSDGYY 55 (115)
T ss_pred cEEEEEEecCCCCCceEEEEEccCCCCCcccccCcCcEE
Confidence 38999999875 456799999863 4445667875
Done!