Query 018970
Match_columns 348
No_of_seqs 267 out of 2707
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 05:36:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05891 Methyltransf_PK: AdoM 100.0 1.4E-39 3.1E-44 283.0 13.6 216 102-325 2-218 (218)
2 COG2226 UbiE Methylase involve 99.9 2.8E-22 6E-27 179.4 13.0 159 136-305 33-221 (238)
3 PLN02396 hexaprenyldihydroxybe 99.9 2E-21 4.3E-26 182.6 18.8 197 101-310 80-291 (322)
4 PF01209 Ubie_methyltran: ubiE 99.9 1.2E-22 2.6E-27 183.0 8.9 145 155-307 45-219 (233)
5 PLN02244 tocopherol O-methyltr 99.9 3E-20 6.4E-25 177.1 18.5 148 156-310 117-280 (340)
6 PLN02233 ubiquinone biosynthes 99.8 3.4E-20 7.3E-25 170.4 15.0 151 155-310 71-250 (261)
7 KOG1540 Ubiquinone biosynthesi 99.8 2.5E-20 5.5E-25 164.1 12.2 171 127-305 73-278 (296)
8 PTZ00098 phosphoethanolamine N 99.8 1.5E-19 3.1E-24 166.4 17.4 148 155-310 50-204 (263)
9 KOG3178 Hydroxyindole-O-methyl 99.8 3.5E-19 7.6E-24 164.8 14.6 215 101-329 115-335 (342)
10 PRK11207 tellurite resistance 99.8 1.7E-18 3.6E-23 152.7 15.6 142 156-308 29-170 (197)
11 KOG1270 Methyltransferases [Co 99.8 7.9E-19 1.7E-23 155.7 12.2 150 158-313 90-254 (282)
12 PF02353 CMAS: Mycolic acid cy 99.8 2.6E-18 5.6E-23 158.3 15.9 163 135-308 43-217 (273)
13 COG2227 UbiG 2-polyprenyl-3-me 99.8 6.6E-19 1.4E-23 155.2 11.1 148 156-313 58-220 (243)
14 TIGR02752 MenG_heptapren 2-hep 99.8 3.6E-18 7.7E-23 154.1 15.4 148 155-310 43-220 (231)
15 PF13489 Methyltransf_23: Meth 99.8 2E-18 4.3E-23 146.3 12.7 132 155-305 20-160 (161)
16 COG2230 Cfa Cyclopropane fatty 99.8 5.4E-18 1.2E-22 154.4 15.8 163 135-308 53-223 (283)
17 PF08241 Methyltransf_11: Meth 99.8 2.2E-18 4.7E-23 132.7 11.0 95 162-267 1-95 (95)
18 TIGR00452 methyltransferase, p 99.8 1.3E-17 2.8E-22 156.2 17.4 145 155-310 119-275 (314)
19 PRK11036 putative S-adenosyl-L 99.8 5.5E-18 1.2E-22 155.4 14.2 144 156-307 43-206 (255)
20 PRK15068 tRNA mo(5)U34 methylt 99.8 1.3E-17 2.9E-22 157.5 17.0 145 156-310 121-276 (322)
21 smart00828 PKS_MT Methyltransf 99.8 1.3E-17 2.9E-22 149.7 16.1 142 160-309 2-145 (224)
22 PLN02490 MPBQ/MSBQ methyltrans 99.8 4.7E-17 1E-21 153.6 18.9 145 156-311 112-259 (340)
23 TIGR00477 tehB tellurite resis 99.8 1.7E-17 3.7E-22 146.0 14.9 142 156-309 29-170 (195)
24 PRK15451 tRNA cmo(5)U34 methyl 99.8 1.4E-17 3.1E-22 151.9 14.0 145 156-307 55-229 (247)
25 PRK14103 trans-aconitate 2-met 99.7 2E-17 4.3E-22 151.6 14.8 137 155-307 27-183 (255)
26 PLN02336 phosphoethanolamine N 99.7 3.9E-17 8.4E-22 162.7 17.4 145 155-308 264-414 (475)
27 TIGR00740 methyltransferase, p 99.7 2.5E-17 5.5E-22 149.5 12.8 143 156-305 52-224 (239)
28 PRK12335 tellurite resistance 99.7 8.4E-17 1.8E-21 150.0 16.6 140 158-309 121-260 (287)
29 PRK10258 biotin biosynthesis p 99.7 1.7E-16 3.6E-21 145.1 17.9 136 156-305 41-184 (251)
30 PF12847 Methyltransf_18: Meth 99.7 2.1E-17 4.5E-22 131.9 10.4 107 157-269 1-111 (112)
31 PRK11873 arsM arsenite S-adeno 99.7 1.4E-16 3.1E-21 147.3 15.3 147 155-309 75-231 (272)
32 PF03848 TehB: Tellurite resis 99.7 6.3E-17 1.4E-21 140.5 11.8 140 156-307 29-168 (192)
33 PF13847 Methyltransf_31: Meth 99.7 1.1E-16 2.4E-21 135.2 11.1 107 156-271 2-112 (152)
34 TIGR03587 Pse_Me-ase pseudamin 99.7 2.4E-15 5.2E-20 133.2 19.8 155 155-325 41-202 (204)
35 PLN02336 phosphoethanolamine N 99.7 3.9E-16 8.5E-21 155.5 16.2 141 156-305 36-179 (475)
36 PRK08317 hypothetical protein; 99.7 7.5E-16 1.6E-20 138.9 15.7 144 155-308 17-176 (241)
37 KOG2361 Predicted methyltransf 99.7 3E-16 6.5E-21 137.6 12.4 185 104-307 30-236 (264)
38 PRK01683 trans-aconitate 2-met 99.7 1.5E-15 3.1E-20 139.5 17.4 137 155-305 29-184 (258)
39 TIGR03840 TMPT_Se_Te thiopurin 99.7 1.6E-15 3.5E-20 135.0 16.3 147 156-307 33-186 (213)
40 PF13649 Methyltransf_25: Meth 99.7 6.9E-17 1.5E-21 126.9 6.5 96 161-263 1-101 (101)
41 TIGR02072 BioC biotin biosynth 99.7 8.3E-16 1.8E-20 138.7 14.2 137 156-306 33-174 (240)
42 TIGR02021 BchM-ChlM magnesium 99.7 1.9E-15 4E-20 135.4 16.3 144 156-308 54-206 (219)
43 PRK00216 ubiE ubiquinone/menaq 99.7 1.4E-15 3.1E-20 137.3 15.6 147 156-309 50-226 (239)
44 PRK06202 hypothetical protein; 99.7 1.4E-15 3E-20 137.5 15.3 140 156-307 59-221 (232)
45 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 1.5E-15 3.2E-20 135.7 15.3 144 156-309 38-211 (223)
46 TIGR02716 C20_methyl_CrtF C-20 99.7 2.3E-15 5.1E-20 141.6 17.3 144 155-306 147-304 (306)
47 PLN02585 magnesium protoporphy 99.7 1.8E-15 4E-20 141.9 15.6 145 157-308 144-299 (315)
48 PRK11705 cyclopropane fatty ac 99.7 1.1E-14 2.4E-19 140.7 20.1 141 155-308 165-312 (383)
49 PF05401 NodS: Nodulation prot 99.6 3.8E-15 8.2E-20 128.1 13.8 146 156-316 42-188 (201)
50 TIGR00537 hemK_rel_arch HemK-r 99.6 6.4E-15 1.4E-19 127.8 15.2 140 157-320 19-177 (179)
51 COG4976 Predicted methyltransf 99.6 7E-17 1.5E-21 140.3 2.3 141 155-310 123-267 (287)
52 PRK05134 bifunctional 3-demeth 99.6 1.1E-14 2.5E-19 131.5 16.5 142 156-307 47-204 (233)
53 PRK07580 Mg-protoporphyrin IX 99.6 1E-14 2.2E-19 131.3 16.0 145 156-309 62-215 (230)
54 PF08003 Methyltransf_9: Prote 99.6 7.8E-15 1.7E-19 134.0 14.9 143 156-309 114-268 (315)
55 PF08242 Methyltransf_12: Meth 99.6 3.7E-17 8.1E-22 127.8 -0.4 95 162-265 1-99 (99)
56 PRK09489 rsmC 16S ribosomal RN 99.6 2.6E-15 5.7E-20 142.7 12.0 215 35-270 76-304 (342)
57 PRK05785 hypothetical protein; 99.6 1.2E-15 2.5E-20 137.4 8.5 90 157-262 51-140 (226)
58 PRK13255 thiopurine S-methyltr 99.6 1.9E-14 4.1E-19 128.6 16.1 147 156-307 36-189 (218)
59 PRK00107 gidB 16S rRNA methylt 99.6 3E-14 6.6E-19 124.2 16.7 124 156-307 44-168 (187)
60 TIGR00138 gidB 16S rRNA methyl 99.6 2.2E-14 4.7E-19 124.7 14.0 123 158-308 43-169 (181)
61 KOG1271 Methyltransferases [Ge 99.6 8.4E-15 1.8E-19 123.2 10.8 129 160-308 70-205 (227)
62 smart00138 MeTrc Methyltransfe 99.6 1.2E-14 2.7E-19 133.7 12.6 114 156-269 98-242 (264)
63 TIGR01983 UbiG ubiquinone bios 99.6 2.5E-14 5.5E-19 128.3 14.1 143 157-308 45-203 (224)
64 KOG4300 Predicted methyltransf 99.6 1.1E-14 2.4E-19 124.8 9.7 146 156-310 75-234 (252)
65 COG2813 RsmC 16S RNA G1207 met 99.6 1.6E-14 3.5E-19 132.0 11.3 217 35-270 37-267 (300)
66 COG4106 Tam Trans-aconitate me 99.6 7.7E-15 1.7E-19 126.7 8.0 162 155-330 28-213 (257)
67 PRK06922 hypothetical protein; 99.6 2.6E-14 5.6E-19 143.1 12.8 109 156-271 417-539 (677)
68 PRK08287 cobalt-precorrin-6Y C 99.6 1E-13 2.2E-18 121.1 15.2 125 155-306 29-154 (187)
69 TIGR02081 metW methionine bios 99.6 1.2E-13 2.5E-18 121.5 15.2 137 156-310 12-169 (194)
70 PRK04266 fibrillarin; Provisio 99.6 1.6E-13 3.5E-18 123.1 16.3 144 155-317 70-219 (226)
71 PRK00121 trmB tRNA (guanine-N( 99.5 2.8E-14 6.1E-19 126.3 9.9 128 157-304 40-177 (202)
72 TIGR03438 probable methyltrans 99.5 3E-13 6.6E-18 126.9 17.2 107 156-267 62-175 (301)
73 TIGR02469 CbiT precorrin-6Y C5 99.5 1.8E-13 3.9E-18 110.7 12.9 104 155-269 17-122 (124)
74 PRK00517 prmA ribosomal protei 99.5 1.9E-13 4.2E-18 124.9 13.9 123 156-310 118-240 (250)
75 PF05175 MTS: Methyltransferas 99.5 1.7E-13 3.6E-18 118.0 12.7 122 134-269 15-140 (170)
76 TIGR00406 prmA ribosomal prote 99.5 3.8E-13 8.1E-18 125.5 14.3 129 156-311 158-286 (288)
77 PF05724 TPMT: Thiopurine S-me 99.5 5.9E-13 1.3E-17 118.8 15.0 166 155-325 35-216 (218)
78 PRK15001 SAM-dependent 23S rib 99.5 4.1E-13 8.8E-18 128.7 14.1 132 128-270 205-341 (378)
79 PTZ00146 fibrillarin; Provisio 99.5 2.5E-12 5.4E-17 118.3 18.4 145 150-315 125-278 (293)
80 PRK13944 protein-L-isoaspartat 99.5 3.6E-13 7.8E-18 119.5 12.5 102 155-269 70-173 (205)
81 PRK14967 putative methyltransf 99.5 1.3E-12 2.8E-17 117.4 14.8 107 155-269 34-159 (223)
82 PLN03075 nicotianamine synthas 99.5 4.2E-13 9.1E-18 123.8 11.4 108 156-269 122-233 (296)
83 PF07021 MetW: Methionine bios 99.5 2.3E-12 4.9E-17 110.9 14.7 138 155-310 11-169 (193)
84 COG2264 PrmA Ribosomal protein 99.5 1.8E-12 3.9E-17 119.3 15.0 132 156-312 161-292 (300)
85 TIGR00091 tRNA (guanine-N(7)-) 99.5 3.9E-13 8.4E-18 118.2 10.3 107 157-269 16-132 (194)
86 PRK11088 rrmA 23S rRNA methylt 99.4 9.1E-13 2E-17 122.0 12.8 95 157-271 85-183 (272)
87 PRK13256 thiopurine S-methyltr 99.4 3E-12 6.5E-17 114.3 15.2 145 156-305 42-196 (226)
88 COG4123 Predicted O-methyltran 99.4 2.8E-12 6E-17 115.2 14.8 140 156-315 43-201 (248)
89 PRK00377 cbiT cobalt-precorrin 99.4 3.1E-12 6.7E-17 112.8 14.9 125 155-303 38-165 (198)
90 TIGR03534 RF_mod_PrmC protein- 99.4 4.8E-12 1E-16 115.4 16.3 131 157-309 87-242 (251)
91 PF05219 DREV: DREV methyltran 99.4 2.3E-12 5E-17 115.4 13.7 142 157-316 94-248 (265)
92 PF06080 DUF938: Protein of un 99.4 2.3E-12 4.9E-17 112.3 13.4 148 160-312 28-196 (204)
93 PRK13942 protein-L-isoaspartat 99.4 1.4E-12 2.9E-17 116.4 12.1 101 155-269 74-176 (212)
94 PRK14968 putative methyltransf 99.4 5.7E-12 1.2E-16 109.6 15.4 134 156-309 22-174 (188)
95 PLN02232 ubiquinone biosynthes 99.4 6.5E-13 1.4E-17 113.2 9.0 122 184-310 1-149 (160)
96 TIGR00080 pimt protein-L-isoas 99.4 1.8E-12 4E-17 115.8 12.3 101 155-269 75-177 (215)
97 PHA03411 putative methyltransf 99.4 5.2E-12 1.1E-16 115.0 14.6 129 157-305 64-211 (279)
98 TIGR03533 L3_gln_methyl protei 99.4 9.9E-12 2.1E-16 115.6 16.6 128 157-306 121-272 (284)
99 TIGR01177 conserved hypothetic 99.4 2.8E-12 6.1E-17 121.9 12.4 128 155-307 180-314 (329)
100 PF06325 PrmA: Ribosomal prote 99.4 2.3E-12 5E-17 119.6 11.1 128 156-312 160-287 (295)
101 PRK14966 unknown domain/N5-glu 99.4 1.3E-11 2.9E-16 118.7 16.2 129 157-307 251-404 (423)
102 PF13659 Methyltransf_26: Meth 99.4 7.9E-13 1.7E-17 106.2 6.6 107 158-269 1-115 (117)
103 PRK11188 rrmJ 23S rRNA methylt 99.4 1.2E-11 2.7E-16 109.9 13.7 98 155-269 49-165 (209)
104 PF05148 Methyltransf_8: Hypot 99.4 3.5E-12 7.5E-17 110.7 9.6 164 101-308 18-185 (219)
105 PRK11805 N5-glutamine S-adenos 99.4 2.8E-11 6E-16 113.7 16.2 126 159-306 135-284 (307)
106 PRK09328 N5-glutamine S-adenos 99.3 4.9E-11 1.1E-15 110.3 17.2 130 156-307 107-261 (275)
107 PRK00312 pcm protein-L-isoaspa 99.3 1.3E-11 2.7E-16 110.1 11.9 101 155-270 76-176 (212)
108 KOG3010 Methyltransferase [Gen 99.3 4.5E-12 9.7E-17 111.6 8.6 118 135-267 17-135 (261)
109 TIGR00536 hemK_fam HemK family 99.3 5.4E-11 1.2E-15 110.8 16.5 128 159-307 116-268 (284)
110 PF03291 Pox_MCEL: mRNA cappin 99.3 4.6E-11 9.9E-16 113.0 16.1 135 135-269 38-186 (331)
111 COG2242 CobL Precorrin-6B meth 99.3 8.9E-11 1.9E-15 100.4 16.3 143 139-310 19-163 (187)
112 PRK07402 precorrin-6B methylas 99.3 4.2E-11 9.1E-16 105.4 14.7 104 155-270 38-143 (196)
113 cd02440 AdoMet_MTases S-adenos 99.3 3.8E-11 8.3E-16 92.4 10.9 102 160-268 1-103 (107)
114 PRK14121 tRNA (guanine-N(7)-)- 99.3 2.7E-11 5.8E-16 115.9 11.2 107 157-269 122-235 (390)
115 PRK01544 bifunctional N5-gluta 99.3 6.6E-11 1.4E-15 118.4 14.0 131 157-308 138-293 (506)
116 PF00891 Methyltransf_2: O-met 99.3 7.1E-11 1.5E-15 107.3 12.8 102 155-272 98-202 (241)
117 TIGR03704 PrmC_rel_meth putati 99.2 1.6E-10 3.5E-15 105.6 13.8 126 158-307 87-239 (251)
118 COG2518 Pcm Protein-L-isoaspar 99.2 1.1E-10 2.4E-15 102.0 11.4 101 155-270 70-170 (209)
119 KOG3045 Predicted RNA methylas 99.2 5.8E-11 1.3E-15 105.3 9.5 154 110-309 139-292 (325)
120 TIGR00438 rrmJ cell division p 99.2 9.9E-11 2.1E-15 102.4 10.9 98 155-269 30-146 (188)
121 PRK00811 spermidine synthase; 99.2 4.8E-11 1E-15 111.0 9.3 112 156-268 75-190 (283)
122 COG2890 HemK Methylase of poly 99.2 3.7E-10 8.1E-15 104.7 14.7 126 160-308 113-263 (280)
123 PRK04457 spermidine synthase; 99.2 1.3E-10 2.8E-15 106.9 10.9 107 156-268 65-176 (262)
124 PRK13943 protein-L-isoaspartat 99.2 1.5E-10 3.2E-15 109.1 11.4 101 155-269 78-180 (322)
125 KOG2899 Predicted methyltransf 99.2 2.1E-10 4.6E-15 101.0 11.1 168 155-325 56-275 (288)
126 KOG1541 Predicted protein carb 99.2 1.3E-10 2.9E-15 100.9 9.5 101 157-269 50-160 (270)
127 smart00650 rADc Ribosomal RNA 99.2 1.9E-10 4E-15 98.9 10.2 103 155-269 11-113 (169)
128 PHA03412 putative methyltransf 99.2 4E-10 8.7E-15 100.5 12.2 131 158-304 50-198 (241)
129 PF01135 PCMT: Protein-L-isoas 99.1 1.1E-10 2.3E-15 103.6 7.4 102 155-270 70-173 (209)
130 PRK11783 rlmL 23S rRNA m(2)G24 99.1 2.4E-10 5.3E-15 118.7 11.2 133 157-308 538-680 (702)
131 PLN02781 Probable caffeoyl-CoA 99.1 3.3E-10 7.1E-15 102.5 10.7 114 156-280 67-188 (234)
132 PF01739 CheR: CheR methyltran 99.1 2.2E-10 4.8E-15 100.5 9.1 114 156-269 30-175 (196)
133 PRK14901 16S rRNA methyltransf 99.1 6.9E-10 1.5E-14 109.4 12.2 133 155-304 250-409 (434)
134 PRK10901 16S rRNA methyltransf 99.1 1.1E-09 2.3E-14 107.9 13.0 133 155-305 242-398 (427)
135 KOG2940 Predicted methyltransf 99.1 1.8E-10 3.8E-15 100.6 6.4 140 158-307 73-226 (325)
136 PF12147 Methyltransf_20: Puta 99.1 5.4E-09 1.2E-13 95.0 16.3 148 156-308 134-298 (311)
137 TIGR00563 rsmB ribosomal RNA s 99.1 9E-10 2E-14 108.3 12.2 110 155-269 236-368 (426)
138 PRK15128 23S rRNA m(5)C1962 me 99.1 6E-10 1.3E-14 108.0 10.6 109 157-269 220-339 (396)
139 PRK14904 16S rRNA methyltransf 99.1 1.3E-09 2.8E-14 107.8 12.9 108 155-269 248-377 (445)
140 PRK13168 rumA 23S rRNA m(5)U19 99.1 4E-09 8.7E-14 104.3 15.9 133 155-315 295-431 (443)
141 TIGR00446 nop2p NOL1/NOP2/sun 99.1 9.5E-10 2.1E-14 101.3 10.7 109 155-269 69-199 (264)
142 PLN02672 methionine S-methyltr 99.1 2.3E-09 5.1E-14 114.1 14.9 138 158-310 119-305 (1082)
143 KOG1975 mRNA cap methyltransfe 99.0 7.6E-10 1.7E-14 101.2 8.5 130 135-268 99-236 (389)
144 TIGR00417 speE spermidine synt 99.0 8.1E-10 1.8E-14 102.2 8.9 110 157-268 72-185 (270)
145 COG2263 Predicted RNA methylas 99.0 1.4E-08 3E-13 86.8 15.5 123 156-307 44-167 (198)
146 PRK01581 speE spermidine synth 99.0 9.2E-09 2E-13 97.4 15.9 143 156-309 149-298 (374)
147 PLN02366 spermidine synthase 99.0 2.8E-09 6.2E-14 99.9 12.1 111 156-268 90-205 (308)
148 PRK14903 16S rRNA methyltransf 99.0 2E-09 4.3E-14 105.9 11.3 109 155-269 235-366 (431)
149 PRK03612 spermidine synthase; 99.0 2.3E-09 5.1E-14 107.8 11.3 136 156-302 296-438 (521)
150 COG2519 GCD14 tRNA(1-methylade 99.0 3.7E-09 8.1E-14 94.5 11.1 126 154-306 91-218 (256)
151 PRK14902 16S rRNA methyltransf 99.0 4.3E-09 9.4E-14 104.1 12.1 135 155-306 248-406 (444)
152 PRK10611 chemotaxis methyltran 99.0 2.5E-09 5.5E-14 99.0 9.3 112 158-269 116-262 (287)
153 PRK10909 rsmD 16S rRNA m(2)G96 99.0 3.8E-09 8.1E-14 93.0 10.0 105 157-270 53-160 (199)
154 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.9 5.1E-09 1.1E-13 95.1 10.0 153 156-308 55-239 (256)
155 PF01596 Methyltransf_3: O-met 98.9 2.5E-09 5.4E-14 94.5 7.8 113 157-280 45-165 (205)
156 PF07942 N2227: N2227-like pro 98.9 3.9E-08 8.4E-13 89.9 15.7 150 156-308 55-242 (270)
157 PRK03522 rumB 23S rRNA methylu 98.9 2.5E-08 5.5E-13 94.2 14.9 130 157-315 173-303 (315)
158 PRK11727 23S rRNA mA1618 methy 98.9 1.1E-08 2.3E-13 96.2 11.9 147 157-308 114-292 (321)
159 PLN02476 O-methyltransferase 98.9 1.1E-08 2.4E-13 94.1 11.7 114 156-280 117-238 (278)
160 COG4122 Predicted O-methyltran 98.9 7.7E-09 1.7E-13 91.6 9.5 124 136-277 45-173 (219)
161 PF02390 Methyltransf_4: Putat 98.9 5.3E-09 1.2E-13 91.9 8.1 104 160-269 20-133 (195)
162 TIGR00479 rumA 23S rRNA (uraci 98.9 3E-08 6.5E-13 97.8 13.7 132 155-313 290-425 (431)
163 PF08704 GCD14: tRNA methyltra 98.8 2E-08 4.4E-13 90.9 10.6 127 155-307 38-170 (247)
164 KOG3987 Uncharacterized conser 98.8 2.8E-09 6E-14 91.8 4.5 154 156-327 111-286 (288)
165 PF03141 Methyltransf_29: Puta 98.8 3.5E-09 7.7E-14 102.7 5.3 179 109-308 73-253 (506)
166 KOG1499 Protein arginine N-met 98.8 1.2E-08 2.7E-13 94.9 8.1 107 155-267 58-165 (346)
167 COG3963 Phospholipid N-methylt 98.8 4.5E-08 9.7E-13 81.8 10.5 117 139-269 33-156 (194)
168 PF11968 DUF3321: Putative met 98.8 1.6E-07 3.5E-12 82.3 14.5 142 138-309 31-182 (219)
169 PF10294 Methyltransf_16: Puta 98.8 1.3E-08 2.8E-13 87.8 7.5 110 155-270 43-157 (173)
170 TIGR02085 meth_trns_rumB 23S r 98.8 6.4E-08 1.4E-12 93.6 13.0 130 157-315 233-363 (374)
171 PLN02589 caffeoyl-CoA O-methyl 98.8 4.7E-08 1E-12 88.8 11.4 124 139-280 68-200 (247)
172 COG1352 CheR Methylase of chem 98.8 6.2E-08 1.3E-12 88.7 11.7 113 157-269 96-241 (268)
173 KOG3191 Predicted N6-DNA-methy 98.8 5.9E-07 1.3E-11 76.2 15.5 141 158-320 44-205 (209)
174 TIGR00478 tly hemolysin TlyA f 98.7 5.4E-08 1.2E-12 87.3 9.8 134 156-308 74-217 (228)
175 PRK14896 ksgA 16S ribosomal RN 98.7 1.1E-07 2.4E-12 87.3 11.4 77 155-242 27-103 (258)
176 TIGR00095 RNA methyltransferas 98.7 5.5E-08 1.2E-12 85.1 8.8 105 157-269 49-159 (189)
177 TIGR03439 methyl_EasF probable 98.7 5E-07 1.1E-11 85.0 15.8 110 155-268 74-196 (319)
178 KOG2904 Predicted methyltransf 98.7 1E-07 2.3E-12 85.6 10.3 109 157-270 148-286 (328)
179 COG0220 Predicted S-adenosylme 98.7 4.9E-08 1.1E-12 87.5 8.1 105 159-269 50-164 (227)
180 PF09243 Rsm22: Mitochondrial 98.7 2.2E-07 4.7E-12 86.1 12.6 131 157-305 33-165 (274)
181 TIGR00755 ksgA dimethyladenosi 98.7 1.7E-07 3.6E-12 85.9 11.3 76 155-241 27-105 (253)
182 PF05185 PRMT5: PRMT5 arginine 98.7 4.6E-08 9.9E-13 96.3 8.0 103 158-266 187-294 (448)
183 PRK00274 ksgA 16S ribosomal RN 98.7 7.2E-08 1.6E-12 89.3 8.9 77 155-241 40-116 (272)
184 KOG1500 Protein arginine N-met 98.6 1.2E-07 2.6E-12 87.4 9.1 104 157-267 177-280 (517)
185 PLN02823 spermine synthase 98.6 4.5E-07 9.7E-12 86.1 11.8 110 156-268 102-219 (336)
186 COG2521 Predicted archaeal met 98.6 2.2E-07 4.8E-12 81.8 8.1 144 155-309 132-278 (287)
187 PTZ00338 dimethyladenosine tra 98.6 1.7E-07 3.7E-12 87.5 7.8 82 155-244 34-115 (294)
188 KOG1269 SAM-dependent methyltr 98.5 7.1E-08 1.5E-12 92.1 5.0 148 155-309 108-268 (364)
189 PRK04148 hypothetical protein; 98.5 1.2E-06 2.6E-11 71.7 11.1 92 157-269 16-109 (134)
190 COG1092 Predicted SAM-dependen 98.5 6.6E-07 1.4E-11 86.1 10.7 110 158-271 218-338 (393)
191 KOG3420 Predicted RNA methylas 98.5 9.4E-08 2E-12 78.0 4.0 79 157-242 48-126 (185)
192 COG4798 Predicted methyltransf 98.5 7.8E-07 1.7E-11 76.2 9.2 158 154-322 45-219 (238)
193 COG0421 SpeE Spermidine syntha 98.5 6.5E-07 1.4E-11 82.8 8.9 108 159-268 78-189 (282)
194 COG1041 Predicted DNA modifica 98.5 5.1E-06 1.1E-10 78.0 14.7 142 140-310 183-332 (347)
195 PRK05031 tRNA (uracil-5-)-meth 98.5 3.1E-06 6.6E-11 81.6 13.5 127 159-315 208-350 (362)
196 PRK00536 speE spermidine synth 98.4 6.5E-07 1.4E-11 81.9 8.2 101 156-269 71-171 (262)
197 PF04672 Methyltransf_19: S-ad 98.4 1.1E-06 2.4E-11 79.9 9.5 158 135-305 49-233 (267)
198 PF01170 UPF0020: Putative RNA 98.4 1.3E-06 2.7E-11 75.8 9.3 109 155-268 26-150 (179)
199 PF10672 Methyltrans_SAM: S-ad 98.4 9E-07 1.9E-11 81.9 8.8 136 157-309 123-267 (286)
200 PF03602 Cons_hypoth95: Conser 98.4 2.5E-07 5.4E-12 80.5 3.9 106 157-269 42-153 (183)
201 PF02527 GidB: rRNA small subu 98.4 1E-06 2.2E-11 76.5 7.7 123 160-307 51-174 (184)
202 TIGR02143 trmA_only tRNA (urac 98.4 1.1E-05 2.3E-10 77.6 15.0 128 159-316 199-342 (353)
203 PRK01544 bifunctional N5-gluta 98.4 1.1E-06 2.3E-11 88.3 8.4 107 157-269 347-462 (506)
204 PRK04338 N(2),N(2)-dimethylgua 98.4 1.1E-06 2.3E-11 85.1 7.9 99 158-268 58-157 (382)
205 KOG1661 Protein-L-isoaspartate 98.3 3.9E-06 8.4E-11 72.9 9.3 107 155-269 80-193 (237)
206 PF02475 Met_10: Met-10+ like- 98.3 1.3E-06 2.8E-11 76.8 6.0 100 155-266 99-199 (200)
207 PF01564 Spermine_synth: Sperm 98.3 1.3E-06 2.8E-11 79.6 6.1 112 156-269 75-191 (246)
208 KOG1331 Predicted methyltransf 98.3 8.7E-07 1.9E-11 80.4 4.8 97 156-268 44-142 (293)
209 PRK11933 yebU rRNA (cytosine-C 98.3 5.3E-06 1.1E-10 82.2 10.7 109 155-269 111-242 (470)
210 COG0357 GidB Predicted S-adeno 98.3 1.2E-05 2.7E-10 71.1 11.9 143 158-325 68-211 (215)
211 PF04816 DUF633: Family of unk 98.2 9.5E-06 2.1E-10 71.7 10.5 124 161-310 1-126 (205)
212 KOG2798 Putative trehalase [Ca 98.2 1.4E-05 3E-10 73.4 11.7 149 156-307 149-336 (369)
213 COG0500 SmtA SAM-dependent met 98.2 2.5E-05 5.5E-10 63.5 12.2 101 161-272 52-158 (257)
214 COG0030 KsgA Dimethyladenosine 98.2 6.4E-06 1.4E-10 74.9 8.1 79 155-242 28-107 (259)
215 COG2520 Predicted methyltransf 98.2 5E-05 1.1E-09 71.8 14.3 143 156-317 187-331 (341)
216 KOG0820 Ribosomal RNA adenine 98.2 9.2E-06 2E-10 73.3 8.6 81 153-241 54-134 (315)
217 COG4627 Uncharacterized protei 98.1 2.6E-06 5.7E-11 70.4 3.8 83 223-305 40-135 (185)
218 KOG1663 O-methyltransferase [S 98.1 2.9E-05 6.3E-10 68.6 10.4 123 140-280 63-193 (237)
219 PRK00050 16S rRNA m(4)C1402 me 98.1 6.8E-06 1.5E-10 76.5 6.2 75 155-237 17-97 (296)
220 COG0742 N6-adenine-specific me 98.0 2.1E-05 4.6E-10 67.9 8.5 108 156-269 42-154 (187)
221 COG1189 Predicted rRNA methyla 98.0 7E-05 1.5E-09 66.6 11.8 139 156-311 78-227 (245)
222 TIGR00308 TRM1 tRNA(guanine-26 98.0 1.1E-05 2.5E-10 77.7 7.0 99 158-268 45-146 (374)
223 COG2265 TrmA SAM-dependent met 98.0 9.9E-05 2.2E-09 72.4 12.6 132 155-313 291-425 (432)
224 PF02384 N6_Mtase: N-6 DNA Met 97.9 3.2E-05 6.9E-10 72.9 8.1 162 155-329 44-235 (311)
225 KOG3201 Uncharacterized conser 97.9 2.2E-05 4.7E-10 65.5 5.9 133 156-306 28-164 (201)
226 TIGR02987 met_A_Alw26 type II 97.9 6.9E-05 1.5E-09 75.9 10.4 80 157-242 31-124 (524)
227 KOG2352 Predicted spermine/spe 97.9 7.9E-05 1.7E-09 72.6 9.8 104 159-269 50-161 (482)
228 KOG1709 Guanidinoacetate methy 97.9 6.8E-05 1.5E-09 65.5 8.3 105 156-269 100-206 (271)
229 PF09445 Methyltransf_15: RNA 97.9 9.2E-06 2E-10 68.9 2.9 73 160-238 2-77 (163)
230 PF00398 RrnaAD: Ribosomal RNA 97.9 0.0001 2.2E-09 67.9 10.0 93 155-261 28-123 (262)
231 PRK11783 rlmL 23S rRNA m(2)G24 97.8 8.7E-05 1.9E-09 77.6 9.9 109 156-269 189-347 (702)
232 PF01728 FtsJ: FtsJ-like methy 97.8 6.5E-06 1.4E-10 71.3 1.3 96 157-269 23-139 (181)
233 COG4076 Predicted RNA methylas 97.8 5.2E-05 1.1E-09 64.8 6.3 101 159-268 34-134 (252)
234 PF01269 Fibrillarin: Fibrilla 97.8 0.00069 1.5E-08 59.9 13.5 145 150-315 66-219 (229)
235 COG0293 FtsJ 23S rRNA methylas 97.8 0.00072 1.6E-08 59.3 13.2 129 155-315 43-190 (205)
236 PF13679 Methyltransf_32: Meth 97.7 0.00018 3.8E-09 59.9 8.2 95 155-257 23-122 (141)
237 PRK11760 putative 23S rRNA C24 97.7 0.0003 6.6E-09 66.2 10.6 123 155-302 209-333 (357)
238 KOG2915 tRNA(1-methyladenosine 97.7 0.0006 1.3E-08 61.7 11.9 102 155-268 103-209 (314)
239 PF05958 tRNA_U5-meth_tr: tRNA 97.7 0.00086 1.9E-08 64.4 13.8 127 160-316 199-341 (352)
240 COG4262 Predicted spermidine s 97.7 0.00054 1.2E-08 64.4 11.4 135 156-305 288-433 (508)
241 KOG2730 Methylase [General fun 97.7 5.2E-05 1.1E-09 66.4 4.4 100 157-264 94-197 (263)
242 COG3897 Predicted methyltransf 97.7 0.00029 6.2E-09 60.9 8.7 100 155-267 77-176 (218)
243 PF08123 DOT1: Histone methyla 97.6 0.00047 1E-08 61.0 10.2 111 155-272 40-161 (205)
244 COG2384 Predicted SAM-dependen 97.6 0.0022 4.8E-08 56.6 13.4 129 157-310 16-145 (226)
245 COG0116 Predicted N6-adenine-s 97.6 0.001 2.2E-08 63.5 12.1 110 155-269 189-344 (381)
246 COG5459 Predicted rRNA methyla 97.6 0.00016 3.4E-09 67.5 6.3 115 158-275 114-231 (484)
247 PF03059 NAS: Nicotianamine sy 97.6 0.00038 8.3E-09 64.1 8.8 107 157-269 120-230 (276)
248 COG0144 Sun tRNA and rRNA cyto 97.5 0.0013 2.8E-08 63.2 11.6 109 155-269 154-288 (355)
249 TIGR01444 fkbM_fam methyltrans 97.4 0.00031 6.6E-09 58.1 6.2 58 160-223 1-59 (143)
250 COG1889 NOP1 Fibrillarin-like 97.4 0.0063 1.4E-07 53.0 13.7 149 149-318 68-224 (231)
251 PF03141 Methyltransf_29: Puta 97.4 0.00053 1.1E-08 67.3 7.6 125 157-311 365-494 (506)
252 PF07091 FmrO: Ribosomal RNA m 97.2 0.0013 2.7E-08 59.4 8.0 153 135-306 89-242 (251)
253 cd00315 Cyt_C5_DNA_methylase C 97.1 0.015 3.2E-07 54.0 13.9 146 160-325 2-163 (275)
254 KOG2187 tRNA uracil-5-methyltr 97.0 0.00088 1.9E-08 65.8 5.3 118 140-271 369-492 (534)
255 PF13578 Methyltransf_24: Meth 97.0 0.0002 4.4E-09 56.2 0.5 99 162-269 1-105 (106)
256 PF05971 Methyltransf_10: Prot 96.9 0.0039 8.5E-08 58.1 7.9 83 158-245 103-192 (299)
257 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.8 0.0024 5.2E-08 59.5 6.2 109 155-269 83-219 (283)
258 KOG2793 Putative N2,N2-dimethy 96.8 0.0065 1.4E-07 55.1 8.1 110 157-269 86-199 (248)
259 PHA01634 hypothetical protein 96.7 0.0065 1.4E-07 48.9 6.8 46 157-202 28-73 (156)
260 KOG3115 Methyltransferase-like 96.7 0.0051 1.1E-07 53.5 6.7 111 157-269 60-183 (249)
261 TIGR00006 S-adenosyl-methyltra 96.7 0.0047 1E-07 57.8 7.0 75 155-236 18-98 (305)
262 COG4301 Uncharacterized conser 96.7 0.062 1.3E-06 48.4 13.3 106 156-268 77-192 (321)
263 PF06962 rRNA_methylase: Putat 96.4 0.0059 1.3E-07 50.4 5.2 81 182-269 1-92 (140)
264 PF06859 Bin3: Bicoid-interact 96.4 0.0017 3.7E-08 51.0 1.5 80 230-309 1-93 (110)
265 PF01861 DUF43: Protein of unk 96.2 0.12 2.7E-06 46.4 12.6 131 157-308 44-178 (243)
266 PRK10742 putative methyltransf 96.1 0.01 2.3E-07 53.7 5.5 87 155-242 84-176 (250)
267 PF02636 Methyltransf_28: Puta 96.1 0.023 5E-07 51.9 7.7 83 157-244 18-109 (252)
268 KOG1562 Spermidine synthase [A 96.1 0.011 2.3E-07 54.4 5.3 113 155-269 119-236 (337)
269 KOG1501 Arginine N-methyltrans 95.9 0.028 6E-07 54.4 7.6 101 158-263 67-169 (636)
270 KOG4589 Cell division protein 95.9 0.051 1.1E-06 46.8 8.4 99 155-270 67-185 (232)
271 PF03492 Methyltransf_7: SAM d 95.8 0.055 1.2E-06 51.6 9.4 114 155-269 14-183 (334)
272 KOG1122 tRNA and rRNA cytosine 95.7 0.055 1.2E-06 52.2 8.5 108 155-269 239-371 (460)
273 PLN02668 indole-3-acetate carb 95.6 0.18 3.9E-06 48.8 12.1 44 226-269 158-237 (386)
274 KOG0822 Protein kinase inhibit 95.6 0.041 8.9E-07 54.4 7.5 114 146-267 356-476 (649)
275 COG1064 AdhP Zn-dependent alco 95.5 0.062 1.3E-06 51.0 8.4 99 152-271 161-261 (339)
276 TIGR00027 mthyl_TIGR00027 meth 95.2 0.65 1.4E-05 42.7 13.9 143 159-306 83-248 (260)
277 KOG4058 Uncharacterized conser 95.2 0.11 2.3E-06 43.2 7.4 115 136-266 55-169 (199)
278 COG0275 Predicted S-adenosylme 95.2 0.074 1.6E-06 49.3 7.3 74 155-235 21-101 (314)
279 PF07757 AdoMet_MTase: Predict 95.0 0.061 1.3E-06 42.1 5.4 45 140-188 44-88 (112)
280 PRK09424 pntA NAD(P) transhydr 94.9 0.21 4.7E-06 50.2 10.3 100 155-269 162-285 (509)
281 PF02005 TRM: N2,N2-dimethylgu 94.9 0.039 8.4E-07 53.5 4.9 102 157-269 49-154 (377)
282 KOG2920 Predicted methyltransf 94.8 0.014 3E-07 53.6 1.7 112 156-269 115-234 (282)
283 COG1565 Uncharacterized conser 94.8 0.068 1.5E-06 50.8 6.3 48 155-202 75-131 (370)
284 COG3129 Predicted SAM-dependen 94.8 0.12 2.7E-06 46.0 7.4 82 156-242 77-165 (292)
285 PF10354 DUF2431: Domain of un 94.8 0.42 9.1E-06 40.8 10.7 129 163-308 2-152 (166)
286 KOG2539 Mitochondrial/chloropl 94.8 0.063 1.4E-06 52.4 6.0 117 156-275 199-321 (491)
287 KOG1596 Fibrillarin and relate 94.7 0.67 1.4E-05 41.7 11.7 143 151-315 150-302 (317)
288 PF00145 DNA_methylase: C-5 cy 94.7 0.17 3.7E-06 47.5 8.8 146 160-327 2-164 (335)
289 KOG0024 Sorbitol dehydrogenase 94.7 0.077 1.7E-06 49.6 6.1 100 153-270 165-274 (354)
290 PF01795 Methyltransf_5: MraW 94.5 0.073 1.6E-06 49.9 5.7 75 155-236 18-99 (310)
291 TIGR00675 dcm DNA-methyltransf 94.5 0.35 7.6E-06 45.7 10.4 145 161-325 1-160 (315)
292 PF04445 SAM_MT: Putative SAM- 94.4 0.042 9.2E-07 49.4 3.7 83 159-242 77-163 (234)
293 PF03269 DUF268: Caenorhabditi 94.1 0.036 7.8E-07 46.6 2.4 130 158-306 2-143 (177)
294 COG0270 Dcm Site-specific DNA 94.1 0.58 1.3E-05 44.5 10.9 145 159-323 4-165 (328)
295 cd08283 FDH_like_1 Glutathione 93.9 0.22 4.8E-06 48.2 8.0 105 155-269 182-306 (386)
296 PRK09880 L-idonate 5-dehydroge 93.9 0.3 6.4E-06 46.5 8.7 97 156-269 168-266 (343)
297 COG0286 HsdM Type I restrictio 93.7 2.7 5.8E-05 42.3 15.3 109 155-268 184-325 (489)
298 PRK10458 DNA cytosine methylas 93.6 2.7 5.7E-05 42.0 14.8 45 156-200 86-130 (467)
299 PF11312 DUF3115: Protein of u 93.4 0.32 6.9E-06 45.5 7.5 116 157-272 86-245 (315)
300 PRK01747 mnmC bifunctional tRN 93.3 0.51 1.1E-05 49.3 9.9 132 156-305 56-224 (662)
301 COG1063 Tdh Threonine dehydrog 93.2 0.72 1.5E-05 44.3 10.0 96 156-271 167-271 (350)
302 PF04989 CmcI: Cephalosporin h 93.2 0.46 9.9E-06 41.9 7.8 105 157-271 32-149 (206)
303 TIGR00561 pntA NAD(P) transhyd 93.1 0.28 6.1E-06 49.3 7.3 98 155-267 161-282 (511)
304 PRK13699 putative methylase; P 93.1 0.34 7.3E-06 43.6 7.1 75 216-305 4-93 (227)
305 COG0686 Ald Alanine dehydrogen 92.0 0.3 6.6E-06 45.5 5.4 100 156-267 166-266 (371)
306 KOG1227 Putative methyltransfe 91.7 0.12 2.6E-06 47.8 2.3 103 158-272 195-300 (351)
307 PF11599 AviRa: RRNA methyltra 91.3 0.55 1.2E-05 41.6 5.9 128 138-269 36-214 (246)
308 cd08254 hydroxyacyl_CoA_DH 6-h 91.0 2.1 4.6E-05 40.0 10.3 94 155-269 163-263 (338)
309 KOG2651 rRNA adenine N-6-methy 90.9 0.59 1.3E-05 44.7 6.1 43 156-198 152-194 (476)
310 COG3510 CmcI Cephalosporin hyd 90.8 1.1 2.5E-05 38.9 7.2 104 157-273 69-184 (237)
311 COG1867 TRM1 N2,N2-dimethylgua 90.7 0.67 1.5E-05 44.2 6.4 100 158-269 53-154 (380)
312 KOG1099 SAM-dependent methyltr 90.5 0.45 9.7E-06 42.5 4.7 93 159-268 43-162 (294)
313 KOG2198 tRNA cytosine-5-methyl 90.3 1.7 3.6E-05 41.6 8.6 110 154-269 152-296 (375)
314 cd08237 ribitol-5-phosphate_DH 89.9 1.7 3.7E-05 41.3 8.6 93 155-269 161-256 (341)
315 PRK11524 putative methyltransf 89.5 0.36 7.8E-06 44.9 3.6 56 213-268 8-79 (284)
316 PF11899 DUF3419: Protein of u 89.4 0.55 1.2E-05 45.6 4.8 62 212-273 275-338 (380)
317 cd08230 glucose_DH Glucose deh 89.2 2 4.3E-05 41.0 8.6 97 155-270 170-270 (355)
318 KOG1253 tRNA methyltransferase 88.8 0.33 7.2E-06 47.9 2.8 104 155-269 107-216 (525)
319 TIGR02822 adh_fam_2 zinc-bindi 88.4 4.5 9.7E-05 38.2 10.3 92 155-270 163-255 (329)
320 cd00401 AdoHcyase S-adenosyl-L 88.2 1.7 3.8E-05 42.6 7.5 88 156-269 200-289 (413)
321 PF02254 TrkA_N: TrkA-N domain 87.8 7.6 0.00017 30.2 9.8 103 166-304 4-113 (116)
322 PF05711 TylF: Macrocin-O-meth 87.6 3.1 6.7E-05 37.9 8.2 106 156-269 73-212 (248)
323 PTZ00357 methyltransferase; Pr 87.6 2.2 4.7E-05 44.2 7.7 104 159-264 702-830 (1072)
324 cd08232 idonate-5-DH L-idonate 87.5 2.4 5.3E-05 39.8 8.0 96 157-269 165-262 (339)
325 cd05188 MDR Medium chain reduc 87.2 2.1 4.5E-05 38.4 7.0 98 156-270 133-233 (271)
326 COG1255 Uncharacterized protei 86.9 3.9 8.5E-05 32.5 7.2 86 158-268 14-101 (129)
327 TIGR01202 bchC 2-desacetyl-2-h 84.9 4.8 0.0001 37.6 8.4 86 157-269 144-231 (308)
328 PF01555 N6_N4_Mtase: DNA meth 84.7 2.5 5.4E-05 37.1 6.1 55 138-198 177-231 (231)
329 PF00107 ADH_zinc_N: Zinc-bind 84.6 2.8 6E-05 33.4 5.8 86 167-272 1-92 (130)
330 KOG0821 Predicted ribosomal RN 84.1 1.2 2.6E-05 39.6 3.6 64 155-225 48-111 (326)
331 TIGR00518 alaDH alanine dehydr 83.8 1.6 3.4E-05 42.3 4.6 99 157-267 166-265 (370)
332 PRK11524 putative methyltransf 83.7 4.1 8.9E-05 37.8 7.3 59 138-202 194-252 (284)
333 KOG2352 Predicted spermine/spe 83.1 1.2 2.5E-05 44.1 3.4 109 156-271 294-418 (482)
334 cd08245 CAD Cinnamyl alcohol d 82.8 9.9 0.00022 35.4 9.7 96 155-269 160-256 (330)
335 TIGR03451 mycoS_dep_FDH mycoth 81.8 13 0.00027 35.4 10.1 99 155-270 174-277 (358)
336 PRK13699 putative methylase; P 81.5 5.9 0.00013 35.6 7.1 58 139-202 150-207 (227)
337 PLN03154 putative allyl alcoho 81.3 6.5 0.00014 37.5 7.9 98 155-269 156-258 (348)
338 cd08255 2-desacetyl-2-hydroxye 81.2 12 0.00026 33.8 9.4 94 155-269 95-190 (277)
339 KOG2078 tRNA modification enzy 80.9 0.88 1.9E-05 44.2 1.7 64 155-223 247-310 (495)
340 cd08281 liver_ADH_like1 Zinc-d 80.4 14 0.0003 35.4 9.9 99 155-270 189-291 (371)
341 TIGR03366 HpnZ_proposed putati 80.0 5.3 0.00012 36.6 6.6 97 156-270 119-219 (280)
342 cd08239 THR_DH_like L-threonin 79.4 19 0.0004 33.8 10.3 98 155-269 161-262 (339)
343 PF14740 DUF4471: Domain of un 79.4 2 4.3E-05 40.0 3.4 65 229-305 221-286 (289)
344 COG0287 TyrA Prephenate dehydr 79.3 9 0.0002 35.6 7.8 88 159-266 4-95 (279)
345 PF07279 DUF1442: Protein of u 79.2 26 0.00056 31.2 10.1 117 137-272 28-151 (218)
346 PRK07417 arogenate dehydrogena 79.0 9.9 0.00021 35.1 8.0 85 160-266 2-88 (279)
347 cd05213 NAD_bind_Glutamyl_tRNA 78.9 16 0.00036 34.3 9.6 122 157-298 177-302 (311)
348 PRK07502 cyclohexadienyl dehyd 78.9 11 0.00024 35.2 8.5 89 159-267 7-98 (307)
349 TIGR02825 B4_12hDH leukotriene 78.7 21 0.00045 33.3 10.3 97 155-269 136-237 (325)
350 cd08234 threonine_DH_like L-th 78.7 17 0.00038 33.8 9.8 95 155-269 157-257 (334)
351 COG2933 Predicted SAM-dependen 78.3 6.9 0.00015 35.9 6.4 89 154-262 208-296 (358)
352 PRK07533 enoyl-(acyl carrier p 78.1 11 0.00025 33.9 8.1 103 158-269 10-148 (258)
353 PRK05708 2-dehydropantoate 2-r 78.0 24 0.00052 33.1 10.4 100 159-269 3-104 (305)
354 KOG2918 Carboxymethyl transfer 77.9 50 0.0011 31.1 11.9 154 155-310 85-279 (335)
355 PLN02586 probable cinnamyl alc 77.8 9.1 0.0002 36.6 7.7 96 155-269 181-278 (360)
356 COG1748 LYS9 Saccharopine dehy 77.8 8.6 0.00019 37.4 7.3 71 159-239 2-77 (389)
357 PF02153 PDH: Prephenate dehyd 77.7 13 0.00027 34.0 8.2 124 171-329 1-133 (258)
358 TIGR03201 dearomat_had 6-hydro 77.3 12 0.00026 35.5 8.3 44 155-198 164-208 (349)
359 TIGR00936 ahcY adenosylhomocys 77.3 8.7 0.00019 37.7 7.3 88 156-269 193-282 (406)
360 PRK08306 dipicolinate synthase 76.1 7.4 0.00016 36.4 6.3 88 157-267 151-239 (296)
361 PRK05476 S-adenosyl-L-homocyst 75.7 9.3 0.0002 37.7 7.1 87 157-269 211-299 (425)
362 PF01210 NAD_Gly3P_dh_N: NAD-d 75.6 12 0.00026 31.2 7.0 100 160-268 1-102 (157)
363 cd01842 SGNH_hydrolase_like_5 74.9 6.3 0.00014 33.9 4.9 79 228-306 48-148 (183)
364 PF04072 LCM: Leucine carboxyl 74.7 10 0.00022 32.7 6.4 92 160-255 81-182 (183)
365 PF05206 TRM13: Methyltransfer 74.4 5.3 0.00012 36.6 4.7 36 155-190 16-57 (259)
366 PLN02740 Alcohol dehydrogenase 74.3 27 0.00059 33.6 10.0 98 155-269 196-300 (381)
367 COG3315 O-Methyltransferase in 74.3 31 0.00068 32.3 10.0 144 158-307 93-263 (297)
368 PRK10309 galactitol-1-phosphat 74.2 11 0.00023 35.7 7.0 97 155-269 158-260 (347)
369 PF11899 DUF3419: Protein of u 74.0 6.8 0.00015 38.1 5.6 45 155-200 33-77 (380)
370 PF03514 GRAS: GRAS domain fam 73.9 17 0.00036 35.3 8.3 109 156-268 109-243 (374)
371 cd08295 double_bond_reductase_ 73.8 15 0.00032 34.6 7.9 98 155-269 149-251 (338)
372 PF05430 Methyltransf_30: S-ad 73.0 4.6 9.9E-05 32.7 3.5 77 213-307 32-110 (124)
373 cd05285 sorbitol_DH Sorbitol d 72.9 35 0.00077 32.0 10.3 97 155-269 160-265 (343)
374 cd08294 leukotriene_B4_DH_like 72.8 33 0.00071 31.8 10.0 97 155-269 141-241 (329)
375 cd08242 MDR_like Medium chain 72.7 30 0.00065 32.0 9.6 92 155-269 153-245 (319)
376 PRK15001 SAM-dependent 23S rib 72.5 56 0.0012 31.8 11.5 116 135-271 28-144 (378)
377 COG4017 Uncharacterized protei 72.5 4.2 9E-05 35.4 3.3 72 155-245 42-114 (254)
378 cd08293 PTGR2 Prostaglandin re 72.3 33 0.00073 32.1 10.0 94 159-269 156-254 (345)
379 COG0604 Qor NADPH:quinone redu 72.2 14 0.00031 35.0 7.3 100 155-272 140-244 (326)
380 cd08261 Zn_ADH7 Alcohol dehydr 72.2 8.7 0.00019 36.0 5.9 97 155-269 157-258 (337)
381 PRK05786 fabG 3-ketoacyl-(acyl 72.0 31 0.00066 30.3 9.1 104 158-270 5-136 (238)
382 cd05278 FDH_like Formaldehyde 71.4 14 0.0003 34.7 7.0 96 155-268 165-266 (347)
383 PF03686 UPF0146: Uncharacteri 71.2 8.2 0.00018 31.3 4.5 87 158-269 14-102 (127)
384 PLN02494 adenosylhomocysteinas 70.5 9.2 0.0002 38.2 5.7 89 156-269 252-341 (477)
385 PLN02827 Alcohol dehydrogenase 70.3 29 0.00062 33.4 9.1 98 155-269 191-295 (378)
386 PF05050 Methyltransf_21: Meth 70.3 8.4 0.00018 31.8 4.8 37 163-199 1-42 (167)
387 PLN02514 cinnamyl-alcohol dehy 70.1 23 0.0005 33.7 8.3 96 156-269 179-275 (357)
388 COG1568 Predicted methyltransf 70.0 13 0.00029 34.4 6.1 103 157-269 152-260 (354)
389 PRK08265 short chain dehydroge 69.9 31 0.00068 31.0 8.8 71 158-239 6-89 (261)
390 cd08238 sorbose_phosphate_red 69.8 50 0.0011 32.2 10.8 101 155-268 173-287 (410)
391 PRK05872 short chain dehydroge 69.6 41 0.00089 31.0 9.7 74 158-240 9-95 (296)
392 PRK07984 enoyl-(acyl carrier p 69.5 45 0.00098 30.2 9.8 74 158-240 6-94 (262)
393 TIGR00872 gnd_rel 6-phosphoglu 68.8 41 0.00088 31.3 9.5 115 160-307 2-118 (298)
394 PRK06522 2-dehydropantoate 2-r 68.7 42 0.00092 30.9 9.6 96 160-268 2-99 (304)
395 PF01488 Shikimate_DH: Shikima 68.6 6.8 0.00015 31.9 3.7 75 157-242 11-87 (135)
396 PRK12921 2-dehydropantoate 2-r 68.5 32 0.00069 31.8 8.8 97 160-268 2-101 (305)
397 PF03446 NAD_binding_2: NAD bi 68.1 14 0.0003 31.0 5.7 115 160-309 3-121 (163)
398 PRK05808 3-hydroxybutyryl-CoA 68.0 39 0.00085 31.0 9.1 98 160-266 5-115 (282)
399 PF02558 ApbA: Ketopantoate re 67.7 19 0.0004 29.5 6.3 101 161-271 1-103 (151)
400 TIGR02818 adh_III_F_hyde S-(hy 67.1 56 0.0012 31.2 10.4 99 155-270 183-288 (368)
401 cd08236 sugar_DH NAD(P)-depend 67.0 15 0.00034 34.3 6.4 97 155-269 157-258 (343)
402 KOG3924 Putative protein methy 66.1 13 0.00028 36.0 5.5 109 154-272 189-311 (419)
403 cd08300 alcohol_DH_class_III c 65.8 59 0.0013 31.0 10.3 98 155-269 184-288 (368)
404 PRK07066 3-hydroxybutyryl-CoA 65.6 17 0.00037 34.5 6.3 100 159-266 8-116 (321)
405 PRK08085 gluconate 5-dehydroge 65.4 63 0.0014 28.7 9.9 74 158-239 9-95 (254)
406 TIGR02819 fdhA_non_GSH formald 64.5 62 0.0013 31.4 10.2 106 155-270 183-300 (393)
407 PF01555 N6_N4_Mtase: DNA meth 64.4 17 0.00038 31.6 5.8 46 248-306 35-81 (231)
408 PLN00203 glutamyl-tRNA reducta 64.2 33 0.00072 34.8 8.3 43 158-200 266-310 (519)
409 PTZ00075 Adenosylhomocysteinas 64.0 16 0.00036 36.5 6.0 88 156-269 252-341 (476)
410 PF10237 N6-adenineMlase: Prob 64.0 90 0.002 26.4 14.2 95 156-269 24-123 (162)
411 cd08298 CAD2 Cinnamyl alcohol 63.9 57 0.0012 30.2 9.6 91 155-269 165-256 (329)
412 TIGR00497 hsdM type I restrict 63.6 50 0.0011 33.3 9.5 44 157-200 217-265 (501)
413 PF01262 AlaDh_PNT_C: Alanine 63.3 2.4 5.1E-05 36.1 -0.0 44 157-200 19-63 (168)
414 PRK08277 D-mannonate oxidoredu 62.6 49 0.0011 29.9 8.7 74 158-239 10-96 (278)
415 PRK06035 3-hydroxyacyl-CoA deh 62.6 27 0.00058 32.4 6.9 99 159-266 4-118 (291)
416 cd08231 MDR_TM0436_like Hypoth 62.2 70 0.0015 30.2 10.0 96 156-269 176-280 (361)
417 cd08285 NADP_ADH NADP(H)-depen 62.0 75 0.0016 29.9 10.1 97 155-269 164-266 (351)
418 PRK08507 prephenate dehydrogen 62.0 32 0.0007 31.5 7.3 84 160-266 2-88 (275)
419 PLN02178 cinnamyl-alcohol dehy 61.7 27 0.00059 33.6 7.1 95 156-269 177-273 (375)
420 PRK00094 gpsA NAD(P)H-dependen 61.5 44 0.00094 31.2 8.3 99 160-268 3-104 (325)
421 COG0541 Ffh Signal recognition 61.4 34 0.00073 33.8 7.4 107 156-271 98-223 (451)
422 cd08233 butanediol_DH_like (2R 61.0 33 0.00072 32.3 7.5 97 155-269 170-272 (351)
423 PRK07985 oxidoreductase; Provi 61.0 63 0.0014 29.8 9.2 104 158-269 49-185 (294)
424 cd08296 CAD_like Cinnamyl alco 60.7 28 0.00061 32.6 6.9 98 155-269 161-259 (333)
425 PRK10669 putative cation:proto 60.6 59 0.0013 33.2 9.6 92 159-269 418-515 (558)
426 COG1893 ApbA Ketopantoate redu 60.5 50 0.0011 31.1 8.4 97 160-268 2-100 (307)
427 PRK09260 3-hydroxybutyryl-CoA 59.9 26 0.00056 32.4 6.3 100 160-267 3-115 (288)
428 PRK03562 glutathione-regulated 59.1 65 0.0014 33.5 9.7 92 158-268 400-497 (621)
429 PRK06249 2-dehydropantoate 2-r 59.1 39 0.00085 31.6 7.5 99 158-268 5-105 (313)
430 cd08277 liver_alcohol_DH_like 59.1 93 0.002 29.6 10.3 98 155-269 182-286 (365)
431 PRK07680 late competence prote 58.9 47 0.001 30.4 7.8 87 160-266 2-93 (273)
432 cd01065 NAD_bind_Shikimate_DH 58.4 37 0.0008 27.7 6.5 74 157-242 18-93 (155)
433 TIGR02356 adenyl_thiF thiazole 58.0 16 0.00034 32.1 4.3 32 158-189 21-54 (202)
434 KOG1201 Hydroxysteroid 17-beta 57.9 41 0.0009 31.4 7.1 75 157-240 37-124 (300)
435 PRK06079 enoyl-(acyl carrier p 57.8 68 0.0015 28.7 8.6 101 158-269 7-143 (252)
436 PRK11064 wecC UDP-N-acetyl-D-m 57.8 66 0.0014 31.6 9.1 99 159-268 4-118 (415)
437 PRK08324 short chain dehydroge 57.5 55 0.0012 34.4 9.0 104 157-269 421-557 (681)
438 PRK06505 enoyl-(acyl carrier p 57.4 85 0.0018 28.5 9.3 103 158-269 7-145 (271)
439 PRK09599 6-phosphogluconate de 57.1 82 0.0018 29.3 9.2 115 160-306 2-118 (301)
440 PRK08293 3-hydroxybutyryl-CoA 56.9 34 0.00074 31.6 6.6 99 160-266 5-117 (287)
441 PRK08415 enoyl-(acyl carrier p 56.9 86 0.0019 28.6 9.2 103 158-269 5-143 (274)
442 COG0373 HemA Glutamyl-tRNA red 56.6 1.1E+02 0.0025 30.1 10.2 68 157-238 177-246 (414)
443 PRK09496 trkA potassium transp 56.3 43 0.00094 32.9 7.6 67 157-236 230-303 (453)
444 PF02826 2-Hacid_dh_C: D-isome 56.2 20 0.00043 30.6 4.6 108 157-298 35-143 (178)
445 PRK06701 short chain dehydroge 56.2 68 0.0015 29.5 8.5 104 158-269 46-181 (290)
446 PRK10083 putative oxidoreducta 55.9 52 0.0011 30.6 7.8 98 155-269 158-259 (339)
447 PRK07109 short chain dehydroge 55.6 66 0.0014 30.4 8.4 74 158-239 8-94 (334)
448 COG5379 BtaA S-adenosylmethion 55.4 26 0.00056 32.8 5.2 45 155-200 61-105 (414)
449 PRK14620 NAD(P)H-dependent gly 54.9 96 0.0021 29.1 9.4 100 160-268 2-105 (326)
450 KOG0023 Alcohol dehydrogenase, 54.8 40 0.00087 32.0 6.5 100 153-270 177-280 (360)
451 PRK07806 short chain dehydroge 54.7 81 0.0017 27.8 8.5 104 158-269 6-134 (248)
452 PF02737 3HCDH_N: 3-hydroxyacy 54.3 29 0.00063 29.8 5.3 100 160-268 1-113 (180)
453 PRK12490 6-phosphogluconate de 54.3 86 0.0019 29.1 8.9 114 160-305 2-117 (299)
454 PRK07889 enoyl-(acyl carrier p 53.9 66 0.0014 28.9 7.9 101 158-269 7-145 (256)
455 PRK12937 short chain dehydroge 53.7 1.1E+02 0.0024 26.8 9.2 104 158-269 5-139 (245)
456 PRK11559 garR tartronate semia 53.5 74 0.0016 29.3 8.3 37 160-197 4-42 (296)
457 PRK12491 pyrroline-5-carboxyla 53.3 78 0.0017 29.1 8.3 87 160-268 4-95 (272)
458 PRK06484 short chain dehydroge 53.3 87 0.0019 31.4 9.4 73 157-240 4-89 (520)
459 PRK03659 glutathione-regulated 53.0 85 0.0018 32.5 9.3 92 159-269 401-498 (601)
460 PRK06139 short chain dehydroge 52.2 42 0.00091 31.8 6.5 74 158-239 7-93 (330)
461 cd05283 CAD1 Cinnamyl alcohol 51.7 91 0.002 29.1 8.7 96 155-269 167-263 (337)
462 PRK06500 short chain dehydroge 51.6 1.4E+02 0.0031 26.0 9.7 70 159-239 7-89 (249)
463 PF06690 DUF1188: Protein of u 51.5 38 0.00082 30.6 5.5 68 159-245 43-111 (252)
464 TIGR02437 FadB fatty oxidation 51.4 94 0.002 33.0 9.5 101 158-267 313-426 (714)
465 PLN02688 pyrroline-5-carboxyla 51.1 75 0.0016 28.8 7.8 85 160-266 2-92 (266)
466 PRK06997 enoyl-(acyl carrier p 50.9 86 0.0019 28.2 8.1 103 158-269 6-145 (260)
467 cd08265 Zn_ADH3 Alcohol dehydr 50.5 87 0.0019 30.0 8.5 98 155-269 201-307 (384)
468 PRK06484 short chain dehydroge 50.4 1.2E+02 0.0026 30.3 9.9 102 157-269 268-400 (520)
469 cd01487 E1_ThiF_like E1_ThiF_l 49.9 53 0.0011 28.0 6.2 31 160-190 1-33 (174)
470 COG0569 TrkA K+ transport syst 49.7 64 0.0014 28.8 6.9 66 160-237 2-73 (225)
471 TIGR01692 HIBADH 3-hydroxyisob 49.6 61 0.0013 29.9 7.0 108 164-306 2-114 (288)
472 COG5379 BtaA S-adenosylmethion 49.3 30 0.00065 32.4 4.6 74 186-270 292-367 (414)
473 PRK12744 short chain dehydroge 49.1 1.4E+02 0.0031 26.4 9.3 102 158-267 8-143 (257)
474 PRK00045 hemA glutamyl-tRNA re 48.9 1.3E+02 0.0028 29.6 9.5 41 156-196 180-222 (423)
475 PRK08594 enoyl-(acyl carrier p 48.8 1.4E+02 0.0031 26.7 9.2 102 158-269 7-147 (257)
476 KOG2671 Putative RNA methylase 48.6 19 0.0004 34.4 3.3 111 155-270 206-355 (421)
477 PRK08818 prephenate dehydrogen 48.5 58 0.0012 31.6 6.8 75 159-266 5-85 (370)
478 cd05281 TDH Threonine dehydrog 48.4 60 0.0013 30.4 7.0 96 156-269 162-262 (341)
479 TIGR00692 tdh L-threonine 3-de 47.7 1.8E+02 0.0039 27.1 10.1 97 155-269 159-261 (340)
480 PRK08655 prephenate dehydrogen 47.6 85 0.0018 31.1 8.0 85 160-266 2-89 (437)
481 PRK12475 thiamine/molybdopteri 47.3 34 0.00073 32.7 5.0 33 158-190 24-58 (338)
482 cd08279 Zn_ADH_class_III Class 47.3 50 0.0011 31.3 6.3 94 155-269 180-282 (363)
483 cd08263 Zn_ADH10 Alcohol dehyd 47.2 1.5E+02 0.0032 28.1 9.5 95 155-269 185-287 (367)
484 PRK06130 3-hydroxybutyryl-CoA 47.0 55 0.0012 30.5 6.4 40 159-199 5-46 (311)
485 KOG0780 Signal recognition par 46.9 41 0.0009 32.8 5.3 104 157-269 100-222 (483)
486 cd08278 benzyl_alcohol_DH Benz 46.7 42 0.00092 31.9 5.7 96 155-269 184-285 (365)
487 cd05292 LDH_2 A subgroup of L- 46.5 1.4E+02 0.0031 27.9 9.1 101 160-270 2-117 (308)
488 KOG2912 Predicted DNA methylas 46.5 48 0.0011 31.4 5.6 76 161-241 106-189 (419)
489 PLN02545 3-hydroxybutyryl-CoA 46.4 1.1E+02 0.0023 28.3 8.2 99 159-266 5-116 (295)
490 PRK07370 enoyl-(acyl carrier p 45.5 83 0.0018 28.2 7.1 103 158-269 6-147 (258)
491 PRK12743 oxidoreductase; Provi 45.5 1.4E+02 0.0031 26.4 8.7 72 159-239 3-89 (256)
492 PRK09496 trkA potassium transp 45.3 1.8E+02 0.0039 28.5 10.0 89 160-268 2-98 (453)
493 PTZ00142 6-phosphogluconate de 45.2 75 0.0016 31.9 7.2 95 160-267 3-99 (470)
494 PF10727 Rossmann-like: Rossma 45.1 1.1E+02 0.0024 24.7 7.0 88 157-267 9-101 (127)
495 PRK06125 short chain dehydroge 45.1 1.1E+02 0.0023 27.3 7.8 75 158-239 7-90 (259)
496 cd05289 MDR_like_2 alcohol deh 44.9 1.6E+02 0.0034 26.5 9.0 92 155-268 142-237 (309)
497 PRK12742 oxidoreductase; Provi 44.8 2E+02 0.0044 24.9 9.5 99 158-269 6-131 (237)
498 PRK12548 shikimate 5-dehydroge 44.2 64 0.0014 29.9 6.3 80 157-244 125-213 (289)
499 PLN02712 arogenate dehydrogena 44.1 91 0.002 32.8 7.9 85 157-264 51-138 (667)
500 cd05284 arabinose_DH_like D-ar 43.9 58 0.0013 30.3 6.1 97 155-269 165-266 (340)
No 1
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=100.00 E-value=1.4e-39 Score=282.97 Aligned_cols=216 Identities=54% Similarity=1.031 Sum_probs=177.6
Q ss_pred hhhHHHhhhhccccccccccccccCcccccccChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC
Q 018970 102 KTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN 181 (348)
Q Consensus 102 ~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~ 181 (348)
...||..+.+||++++++++||++||++++..|+..+..||..+...... ......++||+|||.|+++..++.+.++
T Consensus 2 ~~~~y~~a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~--~~~~~~~alDcGAGIGRVTk~lLl~~f~ 79 (218)
T PF05891_consen 2 KKIWYEKAKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKP--GKPKFNRALDCGAGIGRVTKGLLLPVFD 79 (218)
T ss_dssp HCHHHHHHHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT-----------SEEEEET-TTTHHHHHTCCCC-S
T ss_pred cccHHHHHHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhccc--CCCCcceEEecccccchhHHHHHHHhcC
Confidence 46899999999999999999999999999999999999999987764321 1234578999999999999999988899
Q ss_pred cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCC
Q 018970 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKP 261 (348)
Q Consensus 182 ~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~Lkp 261 (348)
.|+.+|+++.+++.|++.+... .....++++..+++|.++.++||+||++|++.|++|+|+..||++|...|+|
T Consensus 80 ~VDlVEp~~~Fl~~a~~~l~~~------~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~ 153 (218)
T PF05891_consen 80 EVDLVEPVEKFLEQAKEYLGKD------NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKP 153 (218)
T ss_dssp EEEEEES-HHHHHHHHHHTCCG------GCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEE
T ss_pred EeEEeccCHHHHHHHHHHhccc------CCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcC
Confidence 9999999999999999887651 1356899999999999877899999999999999999999999999999999
Q ss_pred CcEEEEEecccCCCc-eecCCCCceecCHHHHHHHHHhcCCeEEEEeecCCCCccceEEEEEEEe
Q 018970 262 GGFFVLKENIARSGF-VLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYALT 325 (348)
Q Consensus 262 gG~lii~~~~~~~~~-~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~~~~~l~~v~~~~l~ 325 (348)
+|+|++.||+...++ .+|..+++++|+.+.+.++|++||++++..+.|.+||+++|||+||||+
T Consensus 154 ~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q~~fP~~L~pV~myaLr 218 (218)
T PF05891_consen 154 NGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQKGFPKELYPVRMYALR 218 (218)
T ss_dssp EEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-TT--TTS-EEEEEEEE
T ss_pred CcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccccCCCccceEEEEEEeC
Confidence 999999999998887 8999999999999999999999999999999999999999999999996
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.88 E-value=2.8e-22 Score=179.36 Aligned_cols=159 Identities=18% Similarity=0.213 Sum_probs=125.4
Q ss_pred hhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcce
Q 018970 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (348)
Q Consensus 136 ~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i 214 (348)
...+..+.+.+..++. ..++.+|||||||||.++..+++.... +|+++|+|+.||+.|+++..+.+. .++
T Consensus 33 ~g~~~~Wr~~~i~~~~---~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~------~~i 103 (238)
T COG2226 33 FGLHRLWRRALISLLG---IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV------QNV 103 (238)
T ss_pred CcchHHHHHHHHHhhC---CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc------cce
Confidence 3444555555555544 447899999999999999999877533 799999999999999999987543 339
Q ss_pred eEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc---------e--------
Q 018970 215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF---------V-------- 277 (348)
Q Consensus 215 ~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~---------~-------- 277 (348)
+|..+|++++|+++++||+|.++..|++++ |+..+|++++|+|||||.+++.+....... .
T Consensus 104 ~fv~~dAe~LPf~D~sFD~vt~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~ 181 (238)
T COG2226 104 EFVVGDAENLPFPDNSFDAVTISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLI 181 (238)
T ss_pred EEEEechhhCCCCCCccCEEEeeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhh
Confidence 999999999999999999999999999999 889999999999999999999875432210 0
Q ss_pred ---ecCCCCce---------ecCHHHHHHHHHhcCCeEEE
Q 018970 278 ---LDKEDRSI---------TRSDFYFKELFSRCGLHIYK 305 (348)
Q Consensus 278 ---~d~~~~~~---------~~s~~~l~~l~~~aGf~~v~ 305 (348)
.......+ ..+.+++.++++++||+.+.
T Consensus 182 g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 182 GKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred ceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEe
Confidence 00000000 14778899999999999887
No 3
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.88 E-value=2e-21 Score=182.59 Aligned_cols=197 Identities=15% Similarity=0.171 Sum_probs=135.4
Q ss_pred hhhhHHHhhhhccccccccccccccCcccccccChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCC
Q 018970 101 KKTQWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF 180 (348)
Q Consensus 101 ~~~~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~ 180 (348)
....+...+..||+... .+..+..++..........+.+.+..........++.+|||||||+|.++..++..+.
T Consensus 80 e~~~f~~~a~~WW~~~g-----~~~~lh~~N~~R~~~i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~g~ 154 (322)
T PLN02396 80 ELAKFSAIADTWWHSEG-----PFKPLHQMNPTRLAFIRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARMGA 154 (322)
T ss_pred HHHHHHHHHHHhcCCCC-----CchHHHHhChHHHHHHHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHcCC
Confidence 34455556668888532 1222223333333333334333332211111134567999999999999999886655
Q ss_pred CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCC
Q 018970 181 NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLK 260 (348)
Q Consensus 181 ~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~Lk 260 (348)
.|+|+|+|+.|++.|+++....+. ..++++.+.|+++++..+++||+|++..+++|++ ++..+++++.++||
T Consensus 155 -~V~GID~s~~~i~~Ar~~~~~~~~-----~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv~--d~~~~L~~l~r~Lk 226 (322)
T PLN02396 155 -TVTGVDAVDKNVKIARLHADMDPV-----TSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVA--NPAEFCKSLSALTI 226 (322)
T ss_pred -EEEEEeCCHHHHHHHHHHHHhcCc-----ccceeEEecCHHHhhhccCCCCEEEEhhHHHhcC--CHHHHHHHHHHHcC
Confidence 599999999999999987643211 2468999999988876668999999999999999 77899999999999
Q ss_pred CCcEEEEEecccCCC----------ce---ecCCCCc--eecCHHHHHHHHHhcCCeEEEEeecC
Q 018970 261 PGGFFVLKENIARSG----------FV---LDKEDRS--ITRSDFYFKELFSRCGLHIYKSKDQK 310 (348)
Q Consensus 261 pgG~lii~~~~~~~~----------~~---~d~~~~~--~~~s~~~l~~l~~~aGf~~v~~~~~~ 310 (348)
|||.+++.+...... +. .....+. ..++.+++.++++++||++++..-..
T Consensus 227 PGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G~~ 291 (322)
T PLN02396 227 PNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAGFV 291 (322)
T ss_pred CCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEeeeE
Confidence 999999987443210 00 1111121 23689999999999999999865433
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.87 E-value=1.2e-22 Score=183.04 Aligned_cols=145 Identities=22% Similarity=0.233 Sum_probs=85.1
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCC-C-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (348)
..++.+|||+|||||.++..++.... . .|+++|+|+.|++.|+++....+. .++++.++|++++++++++||
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~------~~i~~v~~da~~lp~~d~sfD 118 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL------QNIEFVQGDAEDLPFPDNSFD 118 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------SEEEEE-BTTB--S-TT-EE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC------CCeeEEEcCHHHhcCCCCcee
Confidence 56778999999999999999887643 2 799999999999999998865432 379999999999999999999
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc--------------------------eecCCCCcee
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF--------------------------VLDKEDRSIT 286 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~--------------------------~~d~~~~~~~ 286 (348)
+|++.+.+++++ |+..++++++|+|||||.++|.|....... .+.....++.
T Consensus 119 ~v~~~fglrn~~--d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~ 196 (233)
T PF01209_consen 119 AVTCSFGLRNFP--DRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIR 196 (233)
T ss_dssp EEEEES-GGG-S--SHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH----------------------------
T ss_pred EEEHHhhHHhhC--CHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccccccccc
Confidence 999999999999 788999999999999999999874322210 0111111222
Q ss_pred --cCHHHHHHHHHhcCCeEEEEe
Q 018970 287 --RSDFYFKELFSRCGLHIYKSK 307 (348)
Q Consensus 287 --~s~~~l~~l~~~aGf~~v~~~ 307 (348)
.+.+++.++++++||+.++..
T Consensus 197 ~f~~~~~~~~~l~~~Gf~~v~~~ 219 (233)
T PF01209_consen 197 RFPSPEELKELLEEAGFKNVEYR 219 (233)
T ss_dssp -----------------------
T ss_pred ccccccccccccccccccccccc
Confidence 367889999999999987654
No 5
>PLN02244 tocopherol O-methyltransferase
Probab=99.85 E-value=3e-20 Score=177.08 Aligned_cols=148 Identities=21% Similarity=0.208 Sum_probs=118.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
.++.+|||||||+|.++..++.+...+|+++|+|+.|++.++++....++ ..++.|.++|+.++++++++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~-----~~~v~~~~~D~~~~~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL-----SDKVSFQVADALNQPFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEcCcccCCCCCCCccEEE
Confidence 56789999999999999999877544799999999999999988765443 3569999999999888888999999
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc----ee--------cC----CCCceecCHHHHHHHHHhc
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF----VL--------DK----EDRSITRSDFYFKELFSRC 299 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~----~~--------d~----~~~~~~~s~~~l~~l~~~a 299 (348)
+..+++|++ +...+++++.++|||||.|++.+....... .. +. .......+.+++.++++++
T Consensus 192 s~~~~~h~~--d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~a 269 (340)
T PLN02244 192 SMESGEHMP--DKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESL 269 (340)
T ss_pred ECCchhccC--CHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHC
Confidence 999999999 778999999999999999999864321110 00 00 0000113788999999999
Q ss_pred CCeEEEEeecC
Q 018970 300 GLHIYKSKDQK 310 (348)
Q Consensus 300 Gf~~v~~~~~~ 310 (348)
||..+...+..
T Consensus 270 Gf~~v~~~d~s 280 (340)
T PLN02244 270 GLQDIKTEDWS 280 (340)
T ss_pred CCCeeEeeeCc
Confidence 99999877654
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.84 E-value=3.4e-20 Score=170.42 Aligned_cols=151 Identities=15% Similarity=0.082 Sum_probs=116.7
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhC-C-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~-~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (348)
+.++.+|||+|||+|.++..++... + ..|+++|+|+.|++.|+++..... .....++.+.++|++++++++++||
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~---~~~~~~i~~~~~d~~~lp~~~~sfD 147 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKA---KSCYKNIEWIEGDATDLPFDDCYFD 147 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhh---hccCCCeEEEEcccccCCCCCCCEe
Confidence 4667899999999999999888663 3 279999999999999987753100 0012468999999999998888999
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce--------ec----------CCCC---------ce
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV--------LD----------KEDR---------SI 285 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~--------~d----------~~~~---------~~ 285 (348)
+|+++.++||++ ++..+++++.++|||||.+++.+........ .. .... ..
T Consensus 148 ~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~ 225 (261)
T PLN02233 148 AITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINE 225 (261)
T ss_pred EEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence 999999999998 7889999999999999999998755432110 00 0000 01
Q ss_pred ecCHHHHHHHHHhcCCeEEEEeecC
Q 018970 286 TRSDFYFKELFSRCGLHIYKSKDQK 310 (348)
Q Consensus 286 ~~s~~~l~~l~~~aGf~~v~~~~~~ 310 (348)
..+.+++.++++++||+.+......
T Consensus 226 f~s~~el~~ll~~aGF~~~~~~~~~ 250 (261)
T PLN02233 226 YLTGEELEKLALEAGFSSAKHYEIS 250 (261)
T ss_pred cCCHHHHHHHHHHCCCCEEEEEEcC
Confidence 2588999999999999998866543
No 7
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.83 E-value=2.5e-20 Score=164.11 Aligned_cols=171 Identities=17% Similarity=0.220 Sum_probs=136.5
Q ss_pred cccccccChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCC-------CcEEEEcCCHHHHHHHHHH
Q 018970 127 FGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-------NEVDLLEPVSHFLDAARES 199 (348)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-------~~v~~vD~S~~~l~~a~~~ 199 (348)
|+.+++......++++++++..++. +.++.++||++||||.++..+++... .+|+++|+||.||+.++++
T Consensus 73 YD~mND~mSlGiHRlWKd~~v~~L~---p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqR 149 (296)
T KOG1540|consen 73 YDIMNDAMSLGIHRLWKDMFVSKLG---PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQR 149 (296)
T ss_pred HHHHHHHhhcchhHHHHHHhhhccC---CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHH
Confidence 4556666677778888888887776 77889999999999999999987632 2799999999999999999
Q ss_pred hCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC-c--
Q 018970 200 LAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG-F-- 276 (348)
Q Consensus 200 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~-~-- 276 (348)
..+.++.. .....|.++|++++|+++++||.+++.+.|.+++ ++.+.+++++|+|||||.|.+.+...... .
T Consensus 150 a~~~~l~~---~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~ 224 (296)
T KOG1540|consen 150 AKKRPLKA---SSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKVENEPLK 224 (296)
T ss_pred HhhcCCCc---CCceEEEeCCcccCCCCCCcceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEccccccHHHH
Confidence 86655521 2348999999999999999999999999999999 89999999999999999999977433221 0
Q ss_pred ------e-----------------ecCCCCcee--cCHHHHHHHHHhcCCeEEE
Q 018970 277 ------V-----------------LDKEDRSIT--RSDFYFKELFSRCGLHIYK 305 (348)
Q Consensus 277 ------~-----------------~d~~~~~~~--~s~~~l~~l~~~aGf~~v~ 305 (348)
. ++....++. .+.+++..+++++||..+.
T Consensus 225 ~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 225 WFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 0 011112222 3778999999999999886
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.83 E-value=1.5e-19 Score=166.41 Aligned_cols=148 Identities=20% Similarity=0.239 Sum_probs=119.0
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
+.++.+|||||||+|..+..++.....+|+++|+|+.|++.|++++.. ..++.+.+.|+.+.++++++||+|
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--------~~~i~~~~~D~~~~~~~~~~FD~V 121 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--------KNKIEFEANDILKKDFPENTFDMI 121 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--------CCceEEEECCcccCCCCCCCeEEE
Confidence 577889999999999999988765444799999999999999998754 346899999998887777899999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC-------CCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK-------EDRSITRSDFYFKELFSRCGLHIYKSK 307 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~-------~~~~~~~s~~~l~~l~~~aGf~~v~~~ 307 (348)
++..+++|++.++...++++++++|||||.|++.+........... .......+..++.++++++||+.+...
T Consensus 122 ~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 201 (263)
T PTZ00098 122 YSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAK 201 (263)
T ss_pred EEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEE
Confidence 9999999998768899999999999999999998764432110100 011112488899999999999999877
Q ss_pred ecC
Q 018970 308 DQK 310 (348)
Q Consensus 308 ~~~ 310 (348)
+..
T Consensus 202 d~~ 204 (263)
T PTZ00098 202 DIS 204 (263)
T ss_pred eCc
Confidence 643
No 9
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.81 E-value=3.5e-19 Score=164.78 Aligned_cols=215 Identities=32% Similarity=0.409 Sum_probs=173.5
Q ss_pred hhhhHHHhhhhccccccccccc-cccCcccccc---cChhhhHHHHHHHHhhhcCC--ccCCCCCcEEEEeccccHHHHH
Q 018970 101 KKTQWYREGISYWEGVEASVDG-VLGGFGNVNE---VDIKGSEAFLQMLLSDRFPN--ARNNQHLVALDCGSGIGRITKN 174 (348)
Q Consensus 101 ~~~~~y~~~~~yW~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~l~~~l~~~l~~--~~~~~~~~VLDvGcG~G~~~~~ 174 (348)
..-.+|.++..||.....+.+| ..++|.+.+. .++..+..++..+...++.+ .+...-...+|||+|.|+++..
T Consensus 115 ~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ 194 (342)
T KOG3178|consen 115 NTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKN 194 (342)
T ss_pred hhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHH
Confidence 4557789999999999999999 6788877665 57777778888877654332 1122346899999999999999
Q ss_pred HHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHH
Q 018970 175 LLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKR 254 (348)
Q Consensus 175 la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~ 254 (348)
++. .+.+|.++++....+..+...+. . .++...+|+..-.+ .-|+||+.|++||++|+|..++|++
T Consensus 195 ll~-~fp~ik~infdlp~v~~~a~~~~-~---------gV~~v~gdmfq~~P---~~daI~mkWiLhdwtDedcvkiLkn 260 (342)
T KOG3178|consen 195 LLS-KYPHIKGINFDLPFVLAAAPYLA-P---------GVEHVAGDMFQDTP---KGDAIWMKWILHDWTDEDCVKILKN 260 (342)
T ss_pred HHH-hCCCCceeecCHHHHHhhhhhhc-C---------CcceecccccccCC---CcCeEEEEeecccCChHHHHHHHHH
Confidence 998 45569999999998888777763 2 15555566544322 2479999999999999999999999
Q ss_pred HHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCCCCccceEEEEEEEeecCC
Q 018970 255 AKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEELFAVKMYALTAEMP 329 (348)
Q Consensus 255 ~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~~~~~l~~v~~~~l~~~~~ 329 (348)
|+..|+|||.+++.|++.......|..+.+..+..+.+...+..+|.+.+..+.+..+|...||+.+|++.+...
T Consensus 261 C~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~~~ 335 (342)
T KOG3178|consen 261 CKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALTAYSY 335 (342)
T ss_pred HHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEeccCcc
Confidence 999999999999999977655556666778888888899999999999999999999999999999999986643
No 10
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.80 E-value=1.7e-18 Score=152.69 Aligned_cols=142 Identities=18% Similarity=0.244 Sum_probs=111.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
.++.+|||+|||+|.++..|++++. +|+++|+|+.|++.++++....++ .++++.+.|+.+++.+ ++||+|+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~~~~-~~fD~I~ 100 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENL------DNLHTAVVDLNNLTFD-GEYDFIL 100 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCC------CcceEEecChhhCCcC-CCcCEEE
Confidence 3557999999999999999998766 599999999999999988765433 3478888898887664 6799999
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD 308 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~ 308 (348)
++.++||+++++...+++++.++|+|||.+++........... .....+.++.+++.++|+ ||+++...+
T Consensus 101 ~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~-~~~~~~~~~~~el~~~~~--~~~~~~~~~ 170 (197)
T PRK11207 101 STVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC-TVGFPFAFKEGELRRYYE--GWEMVKYNE 170 (197)
T ss_pred EecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCC-CCCCCCccCHHHHHHHhC--CCeEEEeeC
Confidence 9999999987789999999999999999976654332211111 112235578889999997 899888643
No 11
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.79 E-value=7.9e-19 Score=155.72 Aligned_cols=150 Identities=15% Similarity=0.197 Sum_probs=114.3
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (348)
Q Consensus 158 ~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~ 237 (348)
+.+|||+|||+|.++..|+..+.. |+|+|+++.|++.|++..........+...++++.+.++++.. +.||.|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~-V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQ-VTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhhCCe-eEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 467999999999999999977765 9999999999999999855433333333345778888888775 459999999
Q ss_pred hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC-c------------eecCCCCc--eecCHHHHHHHHHhcCCe
Q 018970 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG-F------------VLDKEDRS--ITRSDFYFKELFSRCGLH 302 (348)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~-~------------~~d~~~~~--~~~s~~~l~~l~~~aGf~ 302 (348)
.+++|+. |+..+++.+.+.|||||.+++++....-. + ......+. -..+++++..+++.+|+.
T Consensus 166 evleHV~--dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~ 243 (282)
T KOG1270|consen 166 EVLEHVK--DPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQ 243 (282)
T ss_pred HHHHHHh--CHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcc
Confidence 9999999 89999999999999999999986332110 0 01111111 124888999999999999
Q ss_pred EEEEeecCCCC
Q 018970 303 IYKSKDQKGLP 313 (348)
Q Consensus 303 ~v~~~~~~~~~ 313 (348)
+..+.....+|
T Consensus 244 v~~v~G~~y~p 254 (282)
T KOG1270|consen 244 VNDVVGEVYNP 254 (282)
T ss_pred hhhhhcccccc
Confidence 88766555443
No 12
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.79 E-value=2.6e-18 Score=158.33 Aligned_cols=163 Identities=19% Similarity=0.193 Sum_probs=114.9
Q ss_pred hhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcce
Q 018970 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (348)
Q Consensus 135 ~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i 214 (348)
+........+.+.+++. ++++.+|||||||+|.++..+++++..+|+++.+|+++.+.+++++.+.|+ ..++
T Consensus 43 Le~AQ~~k~~~~~~~~~---l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl-----~~~v 114 (273)
T PF02353_consen 43 LEEAQERKLDLLCEKLG---LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL-----EDRV 114 (273)
T ss_dssp HHHHHHHHHHHHHTTTT-----TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS-----SSTE
T ss_pred HHHHHHHHHHHHHHHhC---CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC-----CCce
Confidence 44444444444444444 899999999999999999999988434699999999999999999988766 4678
Q ss_pred eEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-----------ee-cCCC
Q 018970 215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-----------VL-DKED 282 (348)
Q Consensus 215 ~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-----------~~-d~~~ 282 (348)
++...|..+++ ++||.|++..+++|+..++...+++++.++|||||.+++......... +. ....
T Consensus 115 ~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiFP 191 (273)
T PF02353_consen 115 EVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIFP 191 (273)
T ss_dssp EEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTST
T ss_pred EEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeCC
Confidence 89999988775 489999999999999888899999999999999999998653322211 00 0012
Q ss_pred CceecCHHHHHHHHHhcCCeEEEEee
Q 018970 283 RSITRSDFYFKELFSRCGLHIYKSKD 308 (348)
Q Consensus 283 ~~~~~s~~~l~~l~~~aGf~~v~~~~ 308 (348)
.....+...+...++++||++..+..
T Consensus 192 gg~lps~~~~~~~~~~~~l~v~~~~~ 217 (273)
T PF02353_consen 192 GGYLPSLSEILRAAEDAGLEVEDVEN 217 (273)
T ss_dssp TS---BHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCCCHHHHHHHHhcCCEEEEEEEE
Confidence 33345778888899999999887654
No 13
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.79 E-value=6.6e-19 Score=155.23 Aligned_cols=148 Identities=18% Similarity=0.230 Sum_probs=117.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
-++.+|||||||-|.++..++..+.. |+++|+|+.+|+.|+....+.+ .++++.+...+++....++||+|+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~-VtgiD~se~~I~~Ak~ha~e~g-------v~i~y~~~~~edl~~~~~~FDvV~ 129 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGAS-VTGIDASEKPIEVAKLHALESG-------VNIDYRQATVEDLASAGGQFDVVT 129 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCe-eEEecCChHHHHHHHHhhhhcc-------ccccchhhhHHHHHhcCCCccEEE
Confidence 36789999999999999999988865 9999999999999999887653 357788888888776558999999
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC----------c---eecCCCCcee--cCHHHHHHHHHhcC
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG----------F---VLDKEDRSIT--RSDFYFKELFSRCG 300 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~----------~---~~d~~~~~~~--~s~~~l~~l~~~aG 300 (348)
|..+++|++ |+..+++.|.+++||||.+++++...... + .+....+.+. ..++++...+..+|
T Consensus 130 cmEVlEHv~--dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~ 207 (243)
T COG2227 130 CMEVLEHVP--DPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGAN 207 (243)
T ss_pred EhhHHHccC--CHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCC
Confidence 999999999 78899999999999999999987543211 0 1122222222 46778888888899
Q ss_pred CeEEEEeecCCCC
Q 018970 301 LHIYKSKDQKGLP 313 (348)
Q Consensus 301 f~~v~~~~~~~~~ 313 (348)
+.+.........|
T Consensus 208 ~~~~~~~g~~y~p 220 (243)
T COG2227 208 LKIIDRKGLTYNP 220 (243)
T ss_pred ceEEeecceEecc
Confidence 9988866544433
No 14
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.78 E-value=3.6e-18 Score=154.14 Aligned_cols=148 Identities=15% Similarity=0.139 Sum_probs=115.0
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhC-CC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~-~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (348)
+.++.+|||+|||+|.++..++... .. .|+++|+|+.|++.+++++...++ .++++.+.|+.+++.++++||
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD 116 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------HNVELVHGNAMELPFDDNSFD 116 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------CceEEEEechhcCCCCCCCcc
Confidence 5677899999999999999988764 32 799999999999999998765322 468899999988877678999
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce--------e-----------cCCC---------Cc
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV--------L-----------DKED---------RS 284 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~--------~-----------d~~~---------~~ 284 (348)
+|++..+++|++ +...+++++.++|+|||.+++.+........ + .... ..
T Consensus 117 ~V~~~~~l~~~~--~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 194 (231)
T TIGR02752 117 YVTIGFGLRNVP--DYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTR 194 (231)
T ss_pred EEEEecccccCC--CHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHH
Confidence 999999999998 7789999999999999999987754322100 0 0000 00
Q ss_pred eecCHHHHHHHHHhcCCeEEEEeecC
Q 018970 285 ITRSDFYFKELFSRCGLHIYKSKDQK 310 (348)
Q Consensus 285 ~~~s~~~l~~l~~~aGf~~v~~~~~~ 310 (348)
...+.+++.++++++||++++.....
T Consensus 195 ~~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 195 DFPGMDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred HcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence 11477889999999999998765443
No 15
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.78 E-value=2e-18 Score=146.26 Aligned_cols=132 Identities=23% Similarity=0.299 Sum_probs=103.1
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
..++.+|||||||+|.++..++..+. +|+++|+|+.+++. . +......+......++++||+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~fD~i 82 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----R-----------NVVFDNFDAQDPPFPDGSFDLI 82 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----T-----------TSEEEEEECHTHHCHSSSEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----h-----------hhhhhhhhhhhhhccccchhhH
Confidence 35678999999999999999987777 69999999999987 1 1223333333333445899999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCC---------CceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS---------GFVLDKEDRSITRSDFYFKELFSRCGLHIYK 305 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~---------~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~ 305 (348)
+++.+|+|++ ++..+|+.+.++|||||++++.+..... .+......+...++.++|.++++++||++++
T Consensus 83 ~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 83 ICNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp EEESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred hhHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 9999999999 7899999999999999999998866431 1111112444557999999999999999986
No 16
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=5.4e-18 Score=154.44 Aligned_cols=163 Identities=19% Similarity=0.195 Sum_probs=127.0
Q ss_pred hhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcce
Q 018970 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (348)
Q Consensus 135 ~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i 214 (348)
+......-.+.+.+.+. ++++.+|||||||+|.+++++++++..+|+|+++|+++.+.+++++...|+ ..++
T Consensus 53 L~eAQ~~k~~~~~~kl~---L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl-----~~~v 124 (283)
T COG2230 53 LEEAQRAKLDLILEKLG---LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL-----EDNV 124 (283)
T ss_pred hHHHHHHHHHHHHHhcC---CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC-----Cccc
Confidence 33333333344444444 899999999999999999999988644799999999999999999988776 4678
Q ss_pred eEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCC----C---cee-cCCCCcee
Q 018970 215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS----G---FVL-DKEDRSIT 286 (348)
Q Consensus 215 ~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~----~---~~~-d~~~~~~~ 286 (348)
++...|..++. +.||-|++..+++|+..++...+++++.++|+|||.+++-...... . +.. -.......
T Consensus 125 ~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~l 201 (283)
T COG2230 125 EVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGEL 201 (283)
T ss_pred EEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcC
Confidence 99999988876 4599999999999999888999999999999999999986543322 1 110 01233334
Q ss_pred cCHHHHHHHHHhcCCeEEEEee
Q 018970 287 RSDFYFKELFSRCGLHIYKSKD 308 (348)
Q Consensus 287 ~s~~~l~~l~~~aGf~~v~~~~ 308 (348)
.+...+.+...++||.+..+..
T Consensus 202 Ps~~~i~~~~~~~~~~v~~~~~ 223 (283)
T COG2230 202 PSISEILELASEAGFVVLDVES 223 (283)
T ss_pred CCHHHHHHHHHhcCcEEehHhh
Confidence 5778888999999999887553
No 17
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.78 E-value=2.2e-18 Score=132.72 Aligned_cols=95 Identities=27% Similarity=0.378 Sum_probs=82.9
Q ss_pred EEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhh
Q 018970 162 LDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG 241 (348)
Q Consensus 162 LDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~ 241 (348)
||+|||+|..+..+++....+|+++|+|+.+++.++++... .+..+...|+.++++++++||+|++..+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~---------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN---------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT---------STEEEEESBTTSSSS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc---------cCchheeehHHhCcccccccccccccccee
Confidence 89999999999999988455799999999999999999865 345599999999998899999999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970 242 HLTDDDFVSFFKRAKVGLKPGGFFVL 267 (348)
Q Consensus 242 ~~~~~d~~~~l~~~~~~LkpgG~lii 267 (348)
|++ ++..+++++.|+|||||+++|
T Consensus 72 ~~~--~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HLE--DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GSS--HHHHHHHHHHHHEEEEEEEEE
T ss_pred ecc--CHHHHHHHHHHHcCcCeEEeC
Confidence 996 889999999999999999986
No 18
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.77 E-value=1.3e-17 Score=156.22 Aligned_cols=145 Identities=17% Similarity=0.155 Sum_probs=111.1
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHH---HhCCCCCCCcCCCcceeEEEcCCCCCCCCCCce
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE---SLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~---~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f 231 (348)
..++.+|||||||+|.++..++..+...|+|+|+|+.|+..++. .... ..++.+...++++++.. .+|
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~--------~~~v~~~~~~ie~lp~~-~~F 189 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN--------DKRAILEPLGIEQLHEL-YAF 189 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc--------CCCeEEEECCHHHCCCC-CCc
Confidence 45567999999999999999988877789999999999976532 2222 24577888888888754 589
Q ss_pred eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc---e-----ecC-CCCceecCHHHHHHHHHhcCCe
Q 018970 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF---V-----LDK-EDRSITRSDFYFKELFSRCGLH 302 (348)
Q Consensus 232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~---~-----~d~-~~~~~~~s~~~l~~l~~~aGf~ 302 (348)
|+|+++.+++|++ ++..+|++++++|||||.|++.+....... . +.. ....+..+...+.++++++||+
T Consensus 190 D~V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~ 267 (314)
T TIGR00452 190 DTVFSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFE 267 (314)
T ss_pred CEEEEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCe
Confidence 9999999999998 788999999999999999998754322111 0 011 1112335889999999999999
Q ss_pred EEEEeecC
Q 018970 303 IYKSKDQK 310 (348)
Q Consensus 303 ~v~~~~~~ 310 (348)
.++.....
T Consensus 268 ~V~i~~~~ 275 (314)
T TIGR00452 268 NFRILDVL 275 (314)
T ss_pred EEEEEecc
Confidence 99866543
No 19
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.77 E-value=5.5e-18 Score=155.39 Aligned_cols=144 Identities=19% Similarity=0.216 Sum_probs=111.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeEE
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~I 234 (348)
.++.+|||+|||+|.++..++..+. +|+++|+|+.|++.|+++....++ ..++++.++|+.++. ..+++||+|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~-----~~~v~~~~~d~~~l~~~~~~~fD~V 116 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGV-----SDNMQFIHCAAQDIAQHLETPVDLI 116 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-----ccceEEEEcCHHHHhhhcCCCCCEE
Confidence 4567999999999999999998765 599999999999999998876543 356889999987764 345789999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC---------c--e---ec-CCC----CceecCHHHHHHH
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG---------F--V---LD-KED----RSITRSDFYFKEL 295 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~---------~--~---~d-~~~----~~~~~s~~~l~~l 295 (348)
++..+++|++ ++..+++++.++|||||.+++........ + . .. ... ....++.+++.++
T Consensus 117 ~~~~vl~~~~--~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 194 (255)
T PRK11036 117 LFHAVLEWVA--DPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQW 194 (255)
T ss_pred EehhHHHhhC--CHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHH
Confidence 9999999998 67899999999999999998864221110 0 0 00 000 0123578999999
Q ss_pred HHhcCCeEEEEe
Q 018970 296 FSRCGLHIYKSK 307 (348)
Q Consensus 296 ~~~aGf~~v~~~ 307 (348)
++++||+++...
T Consensus 195 l~~aGf~~~~~~ 206 (255)
T PRK11036 195 LEEAGWQIMGKT 206 (255)
T ss_pred HHHCCCeEeeee
Confidence 999999988644
No 20
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.77 E-value=1.3e-17 Score=157.45 Aligned_cols=145 Identities=19% Similarity=0.186 Sum_probs=112.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHH--hCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~--~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
..+.+|||||||+|.++..++..++..|+|+|+|+.|+..++.. .... ..++.+..+|+++++. .++||+
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~-------~~~i~~~~~d~e~lp~-~~~FD~ 192 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN-------DQRAHLLPLGIEQLPA-LKAFDT 192 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC-------CCCeEEEeCCHHHCCC-cCCcCE
Confidence 35679999999999999999988877899999999999765432 2110 2468999999999887 588999
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc--------eecCC-CCceecCHHHHHHHHHhcCCeEE
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF--------VLDKE-DRSITRSDFYFKELFSRCGLHIY 304 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~--------~~d~~-~~~~~~s~~~l~~l~~~aGf~~v 304 (348)
|++..+++|+. ++..++++++++|+|||.+++......... .+... ...+..+.+.+.++++++||+.+
T Consensus 193 V~s~~vl~H~~--dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i 270 (322)
T PRK15068 193 VFSMGVLYHRR--SPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDV 270 (322)
T ss_pred EEECChhhccC--CHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceE
Confidence 99999999998 788999999999999999998753321110 01111 11233588999999999999999
Q ss_pred EEeecC
Q 018970 305 KSKDQK 310 (348)
Q Consensus 305 ~~~~~~ 310 (348)
+.....
T Consensus 271 ~~~~~~ 276 (322)
T PRK15068 271 RIVDVS 276 (322)
T ss_pred EEEeCC
Confidence 876543
No 21
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.77 E-value=1.3e-17 Score=149.68 Aligned_cols=142 Identities=22% Similarity=0.230 Sum_probs=113.7
Q ss_pred cEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeech
Q 018970 160 VALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (348)
Q Consensus 160 ~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~ 238 (348)
+|||||||+|.++..+++.+. .+|+++|+|+.+++.+++++...++ ..++++...|+.+.+.+ ++||+|++..
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-----~~~i~~~~~d~~~~~~~-~~fD~I~~~~ 75 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-----QGRIRIFYRDSAKDPFP-DTYDLVFGFE 75 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEecccccCCCC-CCCCEeehHH
Confidence 699999999999999987764 3799999999999999998876544 45689999998766544 6899999999
Q ss_pred hhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCcee-cCCCCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVL-DKEDRSITRSDFYFKELFSRCGLHIYKSKDQ 309 (348)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~-d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~ 309 (348)
+++|+. +...+++++.++|||||.+++.+......... ......+..+..+|.++++++||++++....
T Consensus 76 ~l~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~ 145 (224)
T smart00828 76 VIHHIK--DKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVDA 145 (224)
T ss_pred HHHhCC--CHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEEC
Confidence 999998 67899999999999999999987643211111 1112233468889999999999999986653
No 22
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.76 E-value=4.7e-17 Score=153.62 Aligned_cols=145 Identities=20% Similarity=0.143 Sum_probs=113.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
.++.+|||||||+|.++..+++... .+|+++|+|+.|++.|+++... .++++...|+.++++++++||+|
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---------~~i~~i~gD~e~lp~~~~sFDvV 182 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---------KECKIIEGDAEDLPFPTDYADRY 182 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---------cCCeEEeccHHhCCCCCCceeEE
Confidence 4567999999999999998886643 3799999999999999987542 35788999999888777899999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCcee--cCCCCceecCHHHHHHHHHhcCCeEEEEeecCC
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVL--DKEDRSITRSDFYFKELFSRCGLHIYKSKDQKG 311 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~--d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~ 311 (348)
+++.+++|++ +...+++++.++|||||.+++.+......... .........+.+++.++++++||+.++......
T Consensus 183 Is~~~L~~~~--d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~ 259 (340)
T PLN02490 183 VSAGSIEYWP--DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGP 259 (340)
T ss_pred EEcChhhhCC--CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcCh
Confidence 9999999998 66789999999999999998876432211100 000011124789999999999999998776543
No 23
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.76 E-value=1.7e-17 Score=146.02 Aligned_cols=142 Identities=15% Similarity=0.199 Sum_probs=108.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
.++.+|||+|||+|.++..+++++. .|+++|+|+.|++.++++....++ .+.+...|+..++.+ ++||+|+
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-------~v~~~~~d~~~~~~~-~~fD~I~ 99 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-------PLRTDAYDINAAALN-EDYDFIF 99 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-------CceeEeccchhcccc-CCCCEEE
Confidence 3457999999999999999998776 599999999999999887755322 366777777666554 6899999
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQ 309 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~ 309 (348)
++.++||++.++...+++++.++|||||++++.+.......... ....+.++.+++.++|. +|+++.....
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~-~~~~~~~~~~el~~~f~--~~~~~~~~e~ 170 (195)
T TIGR00477 100 STVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH-MPFSFTFKEDELRQYYA--DWELLKYNEA 170 (195)
T ss_pred EecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC-CCcCccCCHHHHHHHhC--CCeEEEeecc
Confidence 99999999877888999999999999999776653322211111 12234578999999997 5888886643
No 24
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.75 E-value=1.4e-17 Score=151.87 Aligned_cols=145 Identities=14% Similarity=0.201 Sum_probs=112.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHh--CC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970 156 NQHLVALDCGSGIGRITKNLLIR--YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~--~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (348)
.++.+|||||||+|..+..++.. .+ .+|+++|+|+.|++.|++++...+. ..++++.+.|+.+++.+ .+|
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----~~~v~~~~~d~~~~~~~--~~D 127 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIRDIAIE--NAS 127 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEeCChhhCCCC--CCC
Confidence 46679999999999999888763 22 2799999999999999999865433 34689999999887754 599
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-----------------eecC----------CCCce
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-----------------VLDK----------EDRSI 285 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-----------------~~d~----------~~~~~ 285 (348)
+|+++.++||+++++...++++++++|||||.|++.+....... .+.. .....
T Consensus 128 ~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~ 207 (247)
T PRK15451 128 MVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVML 207 (247)
T ss_pred EEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc
Confidence 99999999999977788999999999999999999874432110 0000 00111
Q ss_pred ecCHHHHHHHHHhcCCeEEEEe
Q 018970 286 TRSDFYFKELFSRCGLHIYKSK 307 (348)
Q Consensus 286 ~~s~~~l~~l~~~aGf~~v~~~ 307 (348)
..+.++..++++++||..+...
T Consensus 208 ~~~~~~~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 208 TDSVETHKARLHKAGFEHSELW 229 (247)
T ss_pred cCCHHHHHHHHHHcCchhHHHH
Confidence 2488889999999999976543
No 25
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.75 E-value=2e-17 Score=151.64 Aligned_cols=137 Identities=16% Similarity=0.238 Sum_probs=105.5
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
..++.+|||||||+|.++..++...+. .|+++|+|+.|++.|++. ++++.++|++++. +.++||+
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~~~~-~~~~fD~ 92 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------------GVDARTGDVRDWK-PKPDTDV 92 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------------CCcEEEcChhhCC-CCCCceE
Confidence 456789999999999999999887543 799999999999999753 3678889998875 3479999
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc-C-CCc----------eec----CC---CCceecCHHHHHH
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA-R-SGF----------VLD----KE---DRSITRSDFYFKE 294 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~-~-~~~----------~~d----~~---~~~~~~s~~~l~~ 294 (348)
|+++.++||++ +...++++++++|||||.+++..... . ... .+. .. ......+.+.+.+
T Consensus 93 v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 170 (255)
T PRK14103 93 VVSNAALQWVP--EHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAE 170 (255)
T ss_pred EEEehhhhhCC--CHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHH
Confidence 99999999998 77899999999999999999863211 0 000 000 00 0112247889999
Q ss_pred HHHhcCCeEEEEe
Q 018970 295 LFSRCGLHIYKSK 307 (348)
Q Consensus 295 l~~~aGf~~v~~~ 307 (348)
+++++||.+....
T Consensus 171 ~l~~aGf~v~~~~ 183 (255)
T PRK14103 171 LLTDAGCKVDAWE 183 (255)
T ss_pred HHHhCCCeEEEEe
Confidence 9999999865544
No 26
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.75 E-value=3.9e-17 Score=162.73 Aligned_cols=145 Identities=19% Similarity=0.180 Sum_probs=115.5
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
+.++.+|||||||+|.++..++......|+++|+|+.|++.|+++.... ..++.|.+.|+.+.++++++||+|
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-------~~~v~~~~~d~~~~~~~~~~fD~I 336 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-------KCSVEFEVADCTKKTYPDNSFDVI 336 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-------CCceEEEEcCcccCCCCCCCEEEE
Confidence 4567899999999999999888765447999999999999999876432 346899999998887766799999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce---e---cCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV---L---DKEDRSITRSDFYFKELFSRCGLHIYKSKD 308 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~---~---d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~ 308 (348)
++..+++|++ ++..++++++++|||||.|++.+........ + -........+..++.++++++||+++....
T Consensus 337 ~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~~d 414 (475)
T PLN02336 337 YSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAED 414 (475)
T ss_pred EECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeeeec
Confidence 9999999999 7889999999999999999998754322110 0 001112235788899999999999987654
No 27
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.73 E-value=2.5e-17 Score=149.51 Aligned_cols=143 Identities=14% Similarity=0.211 Sum_probs=112.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC--C-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRY--F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~--~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (348)
.++.+|||+|||+|.++..+++.. + ..|+++|+|+.|++.|++++...+. ..++++.+.|+.+++.+ .+|
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----~~~v~~~~~d~~~~~~~--~~d 124 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDIRHVEIK--NAS 124 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECChhhCCCC--CCC
Confidence 466799999999999999998763 2 2799999999999999998765322 24688999999988754 589
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-----ee---------cCC-------------CCce
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-----VL---------DKE-------------DRSI 285 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-----~~---------d~~-------------~~~~ 285 (348)
+|+++.++||+++++...++++++++|||||.|++.+....... .. +.. ....
T Consensus 125 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 204 (239)
T TIGR00740 125 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMR 204 (239)
T ss_pred EEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCC
Confidence 99999999999987889999999999999999999986432211 00 000 0112
Q ss_pred ecCHHHHHHHHHhcCCeEEE
Q 018970 286 TRSDFYFKELFSRCGLHIYK 305 (348)
Q Consensus 286 ~~s~~~l~~l~~~aGf~~v~ 305 (348)
..+.+++.++++++||..++
T Consensus 205 ~~s~~~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 205 TDSIETHKARLKNVGFSHVE 224 (239)
T ss_pred CCCHHHHHHHHHHcCCchHH
Confidence 35889999999999998654
No 28
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.73 E-value=8.4e-17 Score=150.01 Aligned_cols=140 Identities=19% Similarity=0.212 Sum_probs=110.5
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (348)
Q Consensus 158 ~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~ 237 (348)
+.+|||+|||+|.++..++..+. .|+++|+|+.|++.+++++...+ .++.+...|+..... +++||+|+++
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~-------l~v~~~~~D~~~~~~-~~~fD~I~~~ 191 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKEN-------LNIRTGLYDINSASI-QEEYDFILST 191 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcC-------CceEEEEechhcccc-cCCccEEEEc
Confidence 45999999999999999998776 59999999999999998876542 257778888877655 4789999999
Q ss_pred hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQ 309 (348)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~ 309 (348)
.++||+++++...+++++.++|+|||++++.......... ......+.++..++.+++.. |+++...+.
T Consensus 192 ~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~-~~~p~~~~~~~~el~~~~~~--~~i~~~~e~ 260 (287)
T PRK12335 192 VVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP-CPMPFSFTFKEGELKDYYQD--WEIVKYNEN 260 (287)
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC-CCCCCCcccCHHHHHHHhCC--CEEEEEecc
Confidence 9999998878899999999999999997775433221111 11233455789999999975 998886543
No 29
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.73 E-value=1.7e-16 Score=145.15 Aligned_cols=136 Identities=15% Similarity=0.217 Sum_probs=106.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
.++.+|||+|||+|.++..++..+. .|+++|+|+.|++.++++... ..+.++|++++++++++||+|+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~~-----------~~~~~~d~~~~~~~~~~fD~V~ 108 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDAA-----------DHYLAGDIESLPLATATFDLAW 108 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCC-----------CCEEEcCcccCcCCCCcEEEEE
Confidence 3567899999999999998886654 699999999999999887532 4678899999887778999999
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-------eecCCCCce-ecCHHHHHHHHHhcCCeEEE
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-------VLDKEDRSI-TRSDFYFKELFSRCGLHIYK 305 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-------~~d~~~~~~-~~s~~~l~~l~~~aGf~~v~ 305 (348)
++.++++++ ++..+++++.++|+|||.++++......-. ..+...... ..+.+++..++.+.|+....
T Consensus 109 s~~~l~~~~--d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 184 (251)
T PRK10258 109 SNLAVQWCG--NLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQHHI 184 (251)
T ss_pred ECchhhhcC--CHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCceeee
Confidence 999999988 788999999999999999999864432111 011111112 24788999999988877543
No 30
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.73 E-value=2.1e-17 Score=131.89 Aligned_cols=107 Identities=24% Similarity=0.232 Sum_probs=87.0
Q ss_pred CCCcEEEEeccccHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCC-CCCCCCCCceeEE
Q 018970 157 QHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFTPETGRYDVI 234 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~fD~I 234 (348)
|+.+|||||||+|.++..+++. ...+|+++|+|+.|++.|++++...+. ..++++.+.|+ ...... +.||+|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~i~~~~~d~~~~~~~~-~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL-----SDRITFVQGDAEFDPDFL-EPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT-----TTTEEEEESCCHGGTTTS-SCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECccccCcccC-CCCCEE
Confidence 4579999999999999999983 333699999999999999999833222 57899999999 333333 579999
Q ss_pred eech-hhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 235 WVQW-CIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 235 i~~~-~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
++.+ +++++.. ++...+++++.+.|+|||+|++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 75 ICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999 6665543 578899999999999999999875
No 31
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.72 E-value=1.4e-16 Score=147.34 Aligned_cols=147 Identities=19% Similarity=0.140 Sum_probs=113.9
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhC-CC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~-~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (348)
+.++.+|||+|||+|..+..++... .. .|+++|+|+.|++.|+++....++ .++++...|+++++.++++||
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------~~v~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------TNVEFRLGEIEALPVADNSVD 148 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------CCEEEEEcchhhCCCCCCcee
Confidence 5678899999999999887766543 32 699999999999999998765432 367899999998887778999
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCcee---c---C--CCCceecCHHHHHHHHHhcCCeEE
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVL---D---K--EDRSITRSDFYFKELFSRCGLHIY 304 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~---d---~--~~~~~~~s~~~l~~l~~~aGf~~v 304 (348)
+|+++.+++|.+ +...+++++.++|||||.|++.+......... . . .......+..++.++++++||..+
T Consensus 149 ~Vi~~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v 226 (272)
T PRK11873 149 VIISNCVINLSP--DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDI 226 (272)
T ss_pred EEEEcCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCce
Confidence 999999999988 67789999999999999999987554322100 0 0 001112477889999999999988
Q ss_pred EEeec
Q 018970 305 KSKDQ 309 (348)
Q Consensus 305 ~~~~~ 309 (348)
.....
T Consensus 227 ~i~~~ 231 (272)
T PRK11873 227 TIQPK 231 (272)
T ss_pred EEEec
Confidence 76443
No 32
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.71 E-value=6.3e-17 Score=140.48 Aligned_cols=140 Identities=19% Similarity=0.190 Sum_probs=105.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
-++.++||+|||.|+.+.+|+.+|++ |+++|.|+..++.+++.+...+ ..++..+.|++++.++ +.||+|+
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~G~~-VtAvD~s~~al~~l~~~a~~~~-------l~i~~~~~Dl~~~~~~-~~yD~I~ 99 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQGFD-VTAVDISPVALEKLQRLAEEEG-------LDIRTRVADLNDFDFP-EEYDFIV 99 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHTT-E-EEEEESSHHHHHHHHHHHHHTT--------TEEEEE-BGCCBS-T-TTEEEEE
T ss_pred cCCCcEEEcCCCCcHHHHHHHHCCCe-EEEEECCHHHHHHHHHHHhhcC-------ceeEEEEecchhcccc-CCcCEEE
Confidence 35679999999999999999999996 9999999999999988776543 3588999999998876 6899999
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK 307 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~ 307 (348)
+..+++|++.+....+++.+...++|||++++........+. ......+.+...++.+.+. |++++.-.
T Consensus 100 st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p-~~~~~~f~~~~~EL~~~y~--dW~il~y~ 168 (192)
T PF03848_consen 100 STVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYP-CPSPFPFLLKPGELREYYA--DWEILKYN 168 (192)
T ss_dssp EESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS---SS--S--B-TTHHHHHTT--TSEEEEEE
T ss_pred EEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCC-CCCCCCcccCHHHHHHHhC--CCeEEEEE
Confidence 999999999988999999999999999998886543322221 2233455567778888887 58888743
No 33
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.70 E-value=1.1e-16 Score=135.19 Aligned_cols=107 Identities=20% Similarity=0.297 Sum_probs=91.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHh-CC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCce
Q 018970 156 NQHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~-~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~f 231 (348)
+++.+|||+|||+|.++..++.. ++ .+++|+|+|+.|++.|++.+...++ .+++|.+.|+.+++ ++ +.|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------~ni~~~~~d~~~l~~~~~-~~~ 74 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------DNIEFIQGDIEDLPQELE-EKF 74 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------TTEEEEESBTTCGCGCSS-TTE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------cccceEEeehhccccccC-CCe
Confidence 35679999999999999999954 32 3799999999999999998765433 37999999999976 44 789
Q ss_pred eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (348)
Q Consensus 232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 271 (348)
|+|++..+++|+. +...+++++.++|++||.+++.+..
T Consensus 75 D~I~~~~~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHFP--DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGTS--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEEcCchhhcc--CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999999999999 7789999999999999999998755
No 34
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.70 E-value=2.4e-15 Score=133.15 Aligned_cols=155 Identities=14% Similarity=0.188 Sum_probs=107.9
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
..++.+|||||||+|.++..++... ...++|+|+|+.|++.|+++.. ++.+..+|+.+ +.++++||+
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----------~~~~~~~d~~~-~~~~~sfD~ 108 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----------NINIIQGSLFD-PFKDNFFDL 108 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----------CCcEEEeeccC-CCCCCCEEE
Confidence 3456789999999999999998763 3379999999999999998753 35677888877 666789999
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC-CCCceecCHHHHHHHHHhc-CCeEEE----Ee
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK-EDRSITRSDFYFKELFSRC-GLHIYK----SK 307 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~-~~~~~~~s~~~l~~l~~~a-Gf~~v~----~~ 307 (348)
|+++.+++|++++++..+++++.+++ ++.+++.+........... .....++..+....+++.. .++++. ..
T Consensus 109 V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~~~~l~~~~~~~~~~ 186 (204)
T TIGR03587 109 VLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPSPVEISYRGNSGRLWKRDFAGEMMDRYPDLKLVDYGFPYH 186 (204)
T ss_pred EEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCCceeeeeeCCcchhhhhhHHHHHHHhCCcceeeeccceee
Confidence 99999999998888999999999997 6788888765443331111 1111223333334444443 366666 33
Q ss_pred ecCCCCccceEEEEEEEe
Q 018970 308 DQKGLPEELFAVKMYALT 325 (348)
Q Consensus 308 ~~~~~~~~l~~v~~~~l~ 325 (348)
++..||.+ .+.+|-+.
T Consensus 187 ~~~~~~~~--~~~~~~~~ 202 (204)
T TIGR03587 187 RDPEFPND--DITWFLLE 202 (204)
T ss_pred cCCCCCCC--CceEEEEe
Confidence 44455544 34455543
No 35
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.69 E-value=3.9e-16 Score=155.52 Aligned_cols=141 Identities=21% Similarity=0.352 Sum_probs=113.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC--CCCCCCceeE
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FTPETGRYDV 233 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~fD~ 233 (348)
.++.+|||||||+|.++..++..+. .|+++|+|+.|++.+++.... ..++.+.+.|+.+ +++++++||+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~~~~--------~~~i~~~~~d~~~~~~~~~~~~fD~ 106 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESINGH--------YKNVKFMCADVTSPDLNISDGSVDL 106 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHhcc--------CCceEEEEecccccccCCCCCCEEE
Confidence 3456899999999999999987654 699999999999988764332 3568899999863 4556679999
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC-ceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG-FVLDKEDRSITRSDFYFKELFSRCGLHIYK 305 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~-~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~ 305 (348)
|+++.+++|++++++..+++++.++|||||++++.++..... ...+..+....++...|.++|.++||....
T Consensus 107 I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 107 IFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDED 179 (475)
T ss_pred EehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHheeccCC
Confidence 999999999998778999999999999999999998764332 222333455556788999999999998775
No 36
>PRK08317 hypothetical protein; Provisional
Probab=99.69 E-value=7.5e-16 Score=138.85 Aligned_cols=144 Identities=20% Similarity=0.182 Sum_probs=111.2
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhC-C-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~-~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (348)
+.++.+|||+|||+|.++..++... + .+|+++|+|+.+++.++++.... ..++.+...|+.+++...++||
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~D 89 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------GPNVEFVRGDADGLPFPDGSFD 89 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------CCceEEEecccccCCCCCCCce
Confidence 5677899999999999999998765 2 37999999999999999873221 3568899999988777678999
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCC--------------CceecCHHHHHHHHHh
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKED--------------RSITRSDFYFKELFSR 298 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~--------------~~~~~s~~~l~~l~~~ 298 (348)
+|++..+++|+. ++..+++++.++|||||.+++.+...... ...... .....+...+.+++++
T Consensus 90 ~v~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 166 (241)
T PRK08317 90 AVRSDRVLQHLE--DPARALAEIARVLRPGGRVVVLDTDWDTL-VWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFRE 166 (241)
T ss_pred EEEEechhhccC--CHHHHHHHHHHHhcCCcEEEEEecCCCce-eecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 999999999999 78899999999999999999987432111 010000 0011344578999999
Q ss_pred cCCeEEEEee
Q 018970 299 CGLHIYKSKD 308 (348)
Q Consensus 299 aGf~~v~~~~ 308 (348)
+||..+....
T Consensus 167 aGf~~~~~~~ 176 (241)
T PRK08317 167 AGLTDIEVEP 176 (241)
T ss_pred cCCCceeEEE
Confidence 9999876543
No 37
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.69 E-value=3e-16 Score=137.63 Aligned_cols=185 Identities=19% Similarity=0.316 Sum_probs=135.7
Q ss_pred hHHHhhhhccccccccccccccCcccccccChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC--
Q 018970 104 QWYREGISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-- 181 (348)
Q Consensus 104 ~~y~~~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-- 181 (348)
.+-..+..||+.... .+...+.-.+++|.+-+...+.... +...+|||||||.|.....+++...+
T Consensus 30 ~y~~~~~k~wD~fy~-----------~~~~rFfkdR~wL~~Efpel~~~~~-~~~~~ilEvGCGvGNtvfPll~~~~n~~ 97 (264)
T KOG2361|consen 30 KYEREASKYWDTFYK-----------IHENRFFKDRNWLLREFPELLPVDE-KSAETILEVGCGVGNTVFPLLKTSPNNR 97 (264)
T ss_pred hhhcchhhhhhhhhh-----------hccccccchhHHHHHhhHHhhCccc-cChhhheeeccCCCcccchhhhcCCCCC
Confidence 444566788885321 2223344456777777777665222 22228999999999999999976655
Q ss_pred -cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC----CCCCCceeEEeechhhhcCChhhHHHHHHHHH
Q 018970 182 -EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK 256 (348)
Q Consensus 182 -~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~ 256 (348)
.|.+.|.|+.+++..+++.... ..++...+.|+..- +++.+++|.|++..+|..++++....+++++.
T Consensus 98 l~v~acDfsp~Ai~~vk~~~~~~-------e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~ 170 (264)
T KOG2361|consen 98 LKVYACDFSPRAIELVKKSSGYD-------ESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLR 170 (264)
T ss_pred eEEEEcCCChHHHHHHHhccccc-------hhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHH
Confidence 7999999999999998876432 23455555565542 24568999999999999999999999999999
Q ss_pred HcCCCCcEEEEEeccc---------------CCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970 257 VGLKPGGFFVLKENIA---------------RSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK 307 (348)
Q Consensus 257 ~~LkpgG~lii~~~~~---------------~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~ 307 (348)
++|||||.|++.+-.. ..-++.+.....+.++.+++.++|.++||..++..
T Consensus 171 ~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~ 236 (264)
T KOG2361|consen 171 TLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLE 236 (264)
T ss_pred HHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhccc
Confidence 9999999999975211 11224455566677899999999999999988743
No 38
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.68 E-value=1.5e-15 Score=139.47 Aligned_cols=137 Identities=19% Similarity=0.304 Sum_probs=104.9
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
..++.+|||||||+|.++..++...+ ..|+++|+|+.|++.|+++.. ++.+...|+.++... ++||+
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-----------~~~~~~~d~~~~~~~-~~fD~ 96 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-----------DCQFVEADIASWQPP-QALDL 96 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-----------CCeEEECchhccCCC-CCccE
Confidence 46678999999999999999987754 379999999999999998753 478888998877543 68999
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCC--C------------ce--e-cCC-CCceecCHHHHHHH
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS--G------------FV--L-DKE-DRSITRSDFYFKEL 295 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~--~------------~~--~-d~~-~~~~~~s~~~l~~l 295 (348)
|+++.++||++ +...+++++.++|||||.+++....... . +. + ... ......+...+.++
T Consensus 97 v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 174 (258)
T PRK01683 97 IFANASLQWLP--DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDA 174 (258)
T ss_pred EEEccChhhCC--CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHH
Confidence 99999999998 6789999999999999999986321110 0 00 0 000 11122466778999
Q ss_pred HHhcCCeEEE
Q 018970 296 FSRCGLHIYK 305 (348)
Q Consensus 296 ~~~aGf~~v~ 305 (348)
+.++|+.+..
T Consensus 175 l~~~g~~v~~ 184 (258)
T PRK01683 175 LAPAACRVDI 184 (258)
T ss_pred HHhCCCceee
Confidence 9999987544
No 39
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.68 E-value=1.6e-15 Score=135.00 Aligned_cols=147 Identities=12% Similarity=-0.009 Sum_probs=106.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCC------CcCCCcceeEEEcCCCCCCCC-C
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM------APDMHKATNFFCVPLQDFTPE-T 228 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~------~~~~~~~i~~~~~d~~~~~~~-~ 228 (348)
.++.+|||+|||.|+.+..|++++.. |+++|+|+.+++.+.+........ ......++++.++|+.+++.. .
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~-V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHR-VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCe-EEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 45679999999999999999999886 999999999999865432110000 000134689999999988743 3
Q ss_pred CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK 307 (348)
Q Consensus 229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~ 307 (348)
+.||.|+...+++|++.+....+++.+.++|||||.+++........ ......+..+.+++.++|.. +|++....
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~---~~~gpp~~~~~~eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQS---EMAGPPFSVSPAEVEALYGG-HYEIELLE 186 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCC---CCCCcCCCCCHHHHHHHhcC-CceEEEEe
Confidence 57999999999999998888999999999999999866654322111 01122345788999999974 45555433
No 40
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.68 E-value=6.9e-17 Score=126.88 Aligned_cols=96 Identities=24% Similarity=0.480 Sum_probs=81.5
Q ss_pred EEEEeccccHHHHHHHHhC---C-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970 161 ALDCGSGIGRITKNLLIRY---F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (348)
Q Consensus 161 VLDvGcG~G~~~~~la~~~---~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~ 236 (348)
|||+|||+|..+..++... + ..++++|+|+.|++.++++.... ..++++.+.|+.+++...++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~-------~~~~~~~~~D~~~l~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED-------GPKVRFVQADARDLPFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT-------TTTSEEEESCTTCHHHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc-------CCceEEEECCHhHCcccCCCeeEEEE
Confidence 7999999999999998775 2 47999999999999999988643 23689999999998876789999999
Q ss_pred c-hhhhcCChhhHHHHHHHHHHcCCCCc
Q 018970 237 Q-WCIGHLTDDDFVSFFKRAKVGLKPGG 263 (348)
Q Consensus 237 ~-~~l~~~~~~d~~~~l~~~~~~LkpgG 263 (348)
. .+++|+++++...+++++.++|+|||
T Consensus 74 ~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 5 55999999999999999999999998
No 41
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.67 E-value=8.3e-16 Score=138.69 Aligned_cols=137 Identities=20% Similarity=0.265 Sum_probs=107.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
..+.+|||+|||+|.++..++..++. .++++|+|+.+++.+++... .++.+...|+.+.+.++++||+|
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~fD~v 102 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------ENVQFICGDAEKLPLEDSSFDLI 102 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------CCCeEEecchhhCCCCCCceeEE
Confidence 34578999999999999999887654 68999999999999988764 25788999999888767899999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce----ecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV----LDKEDRSITRSDFYFKELFSRCGLHIYKS 306 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~----~d~~~~~~~~s~~~l~~l~~~aGf~~v~~ 306 (348)
++..++||+. ++..+++++.++|+|||.+++.......... ... ......+.+.+.+++..+ |..+..
T Consensus 103 i~~~~l~~~~--~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~-f~~~~~ 174 (240)
T TIGR02072 103 VSNLALQWCD--DLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQ-HGLRYLSLDELKALLKNS-FELLTL 174 (240)
T ss_pred EEhhhhhhcc--CHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHH-hccCCCCHHHHHHHHHHh-cCCcEE
Confidence 9999999998 7889999999999999999998643322110 110 111224778889999887 776553
No 42
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.67 E-value=1.9e-15 Score=135.44 Aligned_cols=144 Identities=15% Similarity=0.175 Sum_probs=110.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
.++.+|||+|||+|.++..++..+. .|+|+|+|+.|++.|++++...+. ..++.|.+.|+.+++ ++||+|+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~~~---~~fD~ii 124 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDV-----AGNVEFEVNDLLSLC---GEFDIVV 124 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECChhhCC---CCcCEEE
Confidence 4567999999999999999987655 699999999999999998765322 236889999988765 6899999
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc------eec---CCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF------VLD---KEDRSITRSDFYFKELFSRCGLHIYKS 306 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~------~~d---~~~~~~~~s~~~l~~l~~~aGf~~v~~ 306 (348)
+..+++|++.+++..+++++.+++++++++.+......... .+. .......++.+++.++++++||+++..
T Consensus 125 ~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~ 204 (219)
T TIGR02021 125 CMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVRE 204 (219)
T ss_pred EhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeee
Confidence 99999999877788999999999998777766432110000 011 112233468999999999999999986
Q ss_pred ee
Q 018970 307 KD 308 (348)
Q Consensus 307 ~~ 308 (348)
..
T Consensus 205 ~~ 206 (219)
T TIGR02021 205 GL 206 (219)
T ss_pred ec
Confidence 53
No 43
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.67 E-value=1.4e-15 Score=137.26 Aligned_cols=147 Identities=16% Similarity=0.183 Sum_probs=115.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
.++.+|||+|||+|.++..++..+. .+++++|+|+.+++.+++++...++ ..++.+...|+.+.+.+.++||+
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~D~ 124 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----SGNVEFVQGDAEALPFPDNSFDA 124 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----ccCeEEEecccccCCCCCCCccE
Confidence 4567999999999999999988774 4899999999999999998765322 35688999999887766678999
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-------------------eecCCCC---------ce
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-------------------VLDKEDR---------SI 285 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-------------------~~d~~~~---------~~ 285 (348)
|++..+++++. ++..+++++.++|+|||.+++.+....... .+..... ..
T Consensus 125 I~~~~~l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (239)
T PRK00216 125 VTIAFGLRNVP--DIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRA 202 (239)
T ss_pred EEEecccccCC--CHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHh
Confidence 99999999988 788999999999999999998764332110 0000000 11
Q ss_pred ecCHHHHHHHHHhcCCeEEEEeec
Q 018970 286 TRSDFYFKELFSRCGLHIYKSKDQ 309 (348)
Q Consensus 286 ~~s~~~l~~l~~~aGf~~v~~~~~ 309 (348)
.++.+++.++++++||+++.....
T Consensus 203 ~~~~~~~~~~l~~aGf~~~~~~~~ 226 (239)
T PRK00216 203 FPDQEELAAMLEEAGFERVRYRNL 226 (239)
T ss_pred CCCHHHHHHHHHhCCCceeeeeee
Confidence 247788999999999998887753
No 44
>PRK06202 hypothetical protein; Provisional
Probab=99.67 E-value=1.4e-15 Score=137.52 Aligned_cols=140 Identities=19% Similarity=0.264 Sum_probs=102.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHh----CCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCc
Q 018970 156 NQHLVALDCGSGIGRITKNLLIR----YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR 230 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~----~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 230 (348)
.++.+|||||||+|.++..|+.. ++. +|+++|+|+.|++.|+++... .++.+.+.+...++..+++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---------~~~~~~~~~~~~l~~~~~~ 129 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---------PGVTFRQAVSDELVAEGER 129 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---------CCCeEEEEecccccccCCC
Confidence 45679999999999999888743 332 799999999999999887643 2356666666666555679
Q ss_pred eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCC----------------CceecCCCCce--ecCHHHH
Q 018970 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS----------------GFVLDKEDRSI--TRSDFYF 292 (348)
Q Consensus 231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~----------------~~~~d~~~~~~--~~s~~~l 292 (348)
||+|+++.++||+++++...+++++.++++ |.+++.+..... .+.......++ .++.+++
T Consensus 130 fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el 207 (232)
T PRK06202 130 FDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAEL 207 (232)
T ss_pred ccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHH
Confidence 999999999999997767899999999998 555555432211 01111111121 2689999
Q ss_pred HHHHHhcCCeEEEEe
Q 018970 293 KELFSRCGLHIYKSK 307 (348)
Q Consensus 293 ~~l~~~aGf~~v~~~ 307 (348)
.+++++ ||++....
T Consensus 208 ~~ll~~-Gf~~~~~~ 221 (232)
T PRK06202 208 AALAPQ-GWRVERQW 221 (232)
T ss_pred HHHhhC-CCeEEecc
Confidence 999999 99977643
No 45
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.67 E-value=1.5e-15 Score=135.73 Aligned_cols=144 Identities=17% Similarity=0.224 Sum_probs=113.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
.++.+|||+|||+|.++..++..++. .++++|+++.+++.++++... ..++++...|+.+.+...++||+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~--------~~~i~~~~~d~~~~~~~~~~~D~ 109 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL--------PLNIEFIQADAEALPFEDNSFDA 109 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc--------CCCceEEecchhcCCCCCCcEEE
Confidence 46789999999999999999888764 799999999999999988752 34688999999888766678999
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-------------------eecCCCC---------ce
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-------------------VLDKEDR---------SI 285 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-------------------~~d~~~~---------~~ 285 (348)
|+++.+++|+. ++..+++++.++|+|||.+++.+....... .+..... ..
T Consensus 110 i~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (223)
T TIGR01934 110 VTIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRA 187 (223)
T ss_pred EEEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHh
Confidence 99999999988 788999999999999999998764322110 0000000 01
Q ss_pred ecCHHHHHHHHHhcCCeEEEEeec
Q 018970 286 TRSDFYFKELFSRCGLHIYKSKDQ 309 (348)
Q Consensus 286 ~~s~~~l~~l~~~aGf~~v~~~~~ 309 (348)
..+.++|.++++++||+++.....
T Consensus 188 ~~~~~~~~~~l~~aGf~~~~~~~~ 211 (223)
T TIGR01934 188 FPSQEELAAMLKEAGFEEVRYRSL 211 (223)
T ss_pred CCCHHHHHHHHHHcCCccceeeee
Confidence 247788999999999998876643
No 46
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.67 E-value=2.3e-15 Score=141.59 Aligned_cols=144 Identities=15% Similarity=0.153 Sum_probs=112.2
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
..+..+|||||||+|.++..++++++. +++++|. +.+++.+++++...++ ..++++...|+.+.+.+ .+|+
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl-----~~rv~~~~~d~~~~~~~--~~D~ 218 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV-----ADRMRGIAVDIYKESYP--EADA 218 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc-----cceEEEEecCccCCCCC--CCCE
Confidence 456779999999999999999988765 7999997 7899999998876554 45789999998765544 3799
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce--e----c----CC-CCc--eecCHHHHHHHHHhcC
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV--L----D----KE-DRS--ITRSDFYFKELFSRCG 300 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~--~----d----~~-~~~--~~~s~~~l~~l~~~aG 300 (348)
|++..++|++.+++...++++++++|+|||.+++.|........ + . .. ... -..+.+++.++++++|
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aG 298 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLG 298 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHHHHcC
Confidence 99999999998767789999999999999999999864332110 0 0 00 000 1134788999999999
Q ss_pred CeEEEE
Q 018970 301 LHIYKS 306 (348)
Q Consensus 301 f~~v~~ 306 (348)
|+.+..
T Consensus 299 f~~v~~ 304 (306)
T TIGR02716 299 YKDVTM 304 (306)
T ss_pred CCeeEe
Confidence 997764
No 47
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.66 E-value=1.8e-15 Score=141.88 Aligned_cols=145 Identities=11% Similarity=0.129 Sum_probs=102.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~ 236 (348)
++.+|||||||+|.++..++..+. .|+++|+|+.|++.|+++....+... ....++.|.+.|+.++ +++||+|++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~-~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAAL-PPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhccccc-ccccceEEEEcchhhc---CCCcCEEEE
Confidence 467999999999999999997765 59999999999999999875431100 0023578888888665 378999999
Q ss_pred chhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc--------ee-cC--CCCceecCHHHHHHHHHhcCCeEEE
Q 018970 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF--------VL-DK--EDRSITRSDFYFKELFSRCGLHIYK 305 (348)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~--------~~-d~--~~~~~~~s~~~l~~l~~~aGf~~v~ 305 (348)
..+++|++++....+++.+.++ .+||.+ +........+ .+ +. ....+.++.+++.++++++||++..
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~l-~~g~li-Is~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~ 296 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLASL-AEKRLI-ISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVAR 296 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHhh-cCCEEE-EEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEE
Confidence 9999999876667788888764 555554 4332111000 01 11 1123445899999999999999886
Q ss_pred Eee
Q 018970 306 SKD 308 (348)
Q Consensus 306 ~~~ 308 (348)
...
T Consensus 297 ~~~ 299 (315)
T PLN02585 297 REM 299 (315)
T ss_pred EEE
Confidence 543
No 48
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.65 E-value=1.1e-14 Score=140.69 Aligned_cols=141 Identities=17% Similarity=0.157 Sum_probs=107.0
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
+.++.+|||||||+|.++..++.....+|+++|+|+.|++.|+++... ..+++...|..++ +++||+|
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~---------l~v~~~~~D~~~l---~~~fD~I 232 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG---------LPVEIRLQDYRDL---NGQFDRI 232 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc---------CeEEEEECchhhc---CCCCCEE
Confidence 577889999999999999999876444799999999999999998743 2477778887665 3689999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-----eecC--CCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-----VLDK--EDRSITRSDFYFKELFSRCGLHIYKSK 307 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-----~~d~--~~~~~~~s~~~l~~l~~~aGf~~v~~~ 307 (348)
++..+++|+...++..+++++.++|||||.+++......... ..+. .......+..++...++ .||.+.+..
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp~g~lps~~~i~~~~~-~~~~v~d~~ 311 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASE-GLFVMEDWH 311 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecCCCcCCCHHHHHHHHH-CCcEEEEEe
Confidence 999999999877788999999999999999999764322111 0110 11122346677777766 589877754
Q ss_pred e
Q 018970 308 D 308 (348)
Q Consensus 308 ~ 308 (348)
.
T Consensus 312 ~ 312 (383)
T PRK11705 312 N 312 (383)
T ss_pred c
Confidence 3
No 49
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.64 E-value=3.8e-15 Score=128.14 Aligned_cols=146 Identities=23% Similarity=0.299 Sum_probs=104.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
..-.++||+|||+|.++..|+.+ .+.++++|+|+.+++.|+++... ..+++|.+.|+.++.++ ++||+|+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--------~~~V~~~~~dvp~~~P~-~~FDLIV 111 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--------LPHVEWIQADVPEFWPE-GRFDLIV 111 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT---S-S-EEEEE
T ss_pred cccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--------CCCeEEEECcCCCCCCC-CCeeEEE
Confidence 44468999999999999999855 56799999999999999999987 46899999999887544 8999999
Q ss_pred echhhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCCCCc
Q 018970 236 VQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPE 314 (348)
Q Consensus 236 ~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~~~~ 314 (348)
++.+++++.+ +++..+++++...|+|||.|++.......... ....+..+.+.++|.+.=-++-...-....++
T Consensus 112 ~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~-----wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~ 186 (201)
T PF05401_consen 112 LSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRR-----WGHAAGAETVLEMLQEHLTEVERVECRGGSPN 186 (201)
T ss_dssp EES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHH-----TT-S--HHHHHHHHHHHSEEEEEEEEE-SSTT
T ss_pred EehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccc-----cCcccchHHHHHHHHHHhhheeEEEEcCCCCC
Confidence 9999999986 68999999999999999999997643221111 22335778888998885444444444555555
Q ss_pred cc
Q 018970 315 EL 316 (348)
Q Consensus 315 ~l 316 (348)
+.
T Consensus 187 ~~ 188 (201)
T PF05401_consen 187 ED 188 (201)
T ss_dssp SE
T ss_pred Cc
Confidence 53
No 50
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.64 E-value=6.4e-15 Score=127.84 Aligned_cols=140 Identities=20% Similarity=0.151 Sum_probs=107.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~ 236 (348)
++.+|||+|||+|.++..++..+. +|+++|+|+.|++.+++++... ..++++...|+.+.. .++||+|++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~-------~~~~~~~~~d~~~~~--~~~fD~Vi~ 88 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLN-------NVGLDVVMTDLFKGV--RGKFDVILF 88 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHc-------CCceEEEEccccccc--CCcccEEEE
Confidence 446899999999999999987776 6999999999999999987643 235778888876654 358999999
Q ss_pred chhhhcCChh-------------------hHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHH
Q 018970 237 QWCIGHLTDD-------------------DFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFS 297 (348)
Q Consensus 237 ~~~l~~~~~~-------------------d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~ 297 (348)
+..+++.++. -+..+++++.++|||||.+++..... .....+.+.++
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~--------------~~~~~~~~~l~ 154 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL--------------NGEPDTFDKLD 154 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc--------------CChHHHHHHHH
Confidence 9888776531 14678999999999999999976432 12567889999
Q ss_pred hcCCeEEEEeecCCCCccceEEE
Q 018970 298 RCGLHIYKSKDQKGLPEELFAVK 320 (348)
Q Consensus 298 ~aGf~~v~~~~~~~~~~~l~~v~ 320 (348)
+.||.........-+-+.++.++
T Consensus 155 ~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 155 ERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred hCCCeEEEEEEeecCceEEEEEE
Confidence 99999777665544334444433
No 51
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.63 E-value=7e-17 Score=140.29 Aligned_cols=141 Identities=22% Similarity=0.304 Sum_probs=106.3
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCcee
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD 232 (348)
..+-.++||+|||||..+..|... ...++|+|+|.+|++.|.++- ..-...++++..|. ..+.+||
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg-----------~YD~L~~Aea~~Fl~~~~~er~D 190 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKG-----------LYDTLYVAEAVLFLEDLTQERFD 190 (287)
T ss_pred CCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhcc-----------chHHHHHHHHHHHhhhccCCccc
Confidence 455679999999999999988644 446999999999999998762 12223334444332 2347899
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc-cC-CCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecC
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI-AR-SGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQK 310 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~-~~-~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~ 310 (348)
+|++..|+.++. ++..++--+...|+|||.|.++.-. .. .+|...+ ...+..+..++..+++..||+++..++..
T Consensus 191 Li~AaDVl~YlG--~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~p-s~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 191 LIVAADVLPYLG--ALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGP-SQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred chhhhhHHHhhc--chhhHHHHHHHhcCCCceEEEEecccCCCCCeecch-hhhhccchHHHHHHHHhcCceEEEeeccc
Confidence 999999999999 8889999999999999999997422 21 2232222 33455688999999999999999976554
No 52
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.63 E-value=1.1e-14 Score=131.46 Aligned_cols=142 Identities=17% Similarity=0.201 Sum_probs=108.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeEE
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~I 234 (348)
.++.+|||||||+|.++..++..+. .++++|+++.+++.+++++... ...+++...++.+++ ...+.||+|
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~fD~I 118 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALES-------GLKIDYRQTTAEELAAEHPGQFDVV 118 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHc-------CCceEEEecCHHHhhhhcCCCccEE
Confidence 4677999999999999998887655 5999999999999999876543 124677777777664 234789999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc----------ee-----cCCCCceecCHHHHHHHHHhc
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF----------VL-----DKEDRSITRSDFYFKELFSRC 299 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~----------~~-----d~~~~~~~~s~~~l~~l~~~a 299 (348)
++..+++|++ +...+++.+.++|+|||.+++......... .. ........++.++|.++++++
T Consensus 119 i~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 196 (233)
T PRK05134 119 TCMEMLEHVP--DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQA 196 (233)
T ss_pred EEhhHhhccC--CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHC
Confidence 9999999998 678899999999999999998764321110 00 001111225788899999999
Q ss_pred CCeEEEEe
Q 018970 300 GLHIYKSK 307 (348)
Q Consensus 300 Gf~~v~~~ 307 (348)
||+++...
T Consensus 197 Gf~~v~~~ 204 (233)
T PRK05134 197 GLEVQDIT 204 (233)
T ss_pred CCeEeeee
Confidence 99999764
No 53
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.63 E-value=1e-14 Score=131.26 Aligned_cols=145 Identities=15% Similarity=0.189 Sum_probs=106.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
.++.+|||||||+|.++..++..+.. |+++|+|+.|++.|++++...+. ..++++...|+.. .+++||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~-v~~~D~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~---~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAK-VVASDISPQMVEEARERAPEAGL-----AGNITFEVGDLES---LLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHhcCC-----ccCcEEEEcCchh---ccCCcCEEE
Confidence 45679999999999999999877764 99999999999999998765432 2468888888543 247899999
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC------cee---cCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG------FVL---DKEDRSITRSDFYFKELFSRCGLHIYKS 306 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~------~~~---d~~~~~~~~s~~~l~~l~~~aGf~~v~~ 306 (348)
+..+++|+++++...+++.+.+.+++++.+.+........ ..+ +........+..++.++++++||++...
T Consensus 133 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 212 (230)
T PRK07580 133 CLDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRT 212 (230)
T ss_pred EcchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEee
Confidence 9999999998888899999999876555444322100000 001 1111223358889999999999999887
Q ss_pred eec
Q 018970 307 KDQ 309 (348)
Q Consensus 307 ~~~ 309 (348)
...
T Consensus 213 ~~~ 215 (230)
T PRK07580 213 ERI 215 (230)
T ss_pred eec
Confidence 654
No 54
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.62 E-value=7.8e-15 Score=133.98 Aligned_cols=143 Identities=21% Similarity=0.229 Sum_probs=108.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHH---HHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAA---RESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a---~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (348)
-.+.+|||||||+|+++..++.+++..|+|+|+++...-.. ++.++. ...+.+....+++++. .+.||
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~--------~~~~~~lplgvE~Lp~-~~~FD 184 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ--------DPPVFELPLGVEDLPN-LGAFD 184 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC--------CccEEEcCcchhhccc-cCCcC
Confidence 35679999999999999999999999999999998876553 333322 1223344457777776 58999
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc--ee------cC-CCCceecCHHHHHHHHHhcCCeE
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF--VL------DK-EDRSITRSDFYFKELFSRCGLHI 303 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~--~~------d~-~~~~~~~s~~~l~~l~~~aGf~~ 303 (348)
+|+|.+||.|.. ++...|+.+.+.|+|||.+++-..+..... .. .. ....|..|...+..+++++||+.
T Consensus 185 tVF~MGVLYHrr--~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~ 262 (315)
T PF08003_consen 185 TVFSMGVLYHRR--SPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKD 262 (315)
T ss_pred EEEEeeehhccC--CHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCce
Confidence 999999999999 899999999999999999998654433221 11 11 12223459999999999999999
Q ss_pred EEEeec
Q 018970 304 YKSKDQ 309 (348)
Q Consensus 304 v~~~~~ 309 (348)
++....
T Consensus 263 v~~v~~ 268 (315)
T PF08003_consen 263 VRCVDV 268 (315)
T ss_pred EEEecC
Confidence 986544
No 55
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.62 E-value=3.7e-17 Score=127.76 Aligned_cols=95 Identities=27% Similarity=0.431 Sum_probs=61.5
Q ss_pred EEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc---CCCCCCCCCCceeEEeec
Q 018970 162 LDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV---PLQDFTPETGRYDVIWVQ 237 (348)
Q Consensus 162 LDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~---d~~~~~~~~~~fD~Ii~~ 237 (348)
||||||+|.++..++..... +++++|+|+.|++.+++++..... .+...... +....... ++||+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN------DNFERLRFDVLDLFDYDPP-ESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---------EEEEE--SSS---CCC-----SEEEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC------cceeEEEeecCChhhcccc-cccceehhh
Confidence 79999999999999988543 799999999999888877654311 12223333 32222222 599999999
Q ss_pred hhhhcCChhhHHHHHHHHHHcCCCCcEE
Q 018970 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFF 265 (348)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~~~LkpgG~l 265 (348)
.++||++ ++..++++++++|||||.|
T Consensus 74 ~vl~~l~--~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLE--DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S---HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhh--hHHHHHHHHHHHcCCCCCC
Confidence 9999996 8899999999999999986
No 56
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.62 E-value=2.6e-15 Score=142.69 Aligned_cols=215 Identities=15% Similarity=0.161 Sum_probs=139.8
Q ss_pred CCcchhhhhhhhhhHhhhhhcccCCCCCCCCcccccccCCCCCCCcccCHHHHHHHhhcCCccchh-------hhhhHH-
Q 018970 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGEQQE-------KKTQWY- 106 (348)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~l~~~~~~~~-------~~~~~y- 106 (348)
..-.-++.+|+.|.+++..++.+++.- +..+.+.+.|.+..| -++...+.+.-.+....... ....+-
T Consensus 76 ~~d~~~~~~pk~k~~~~~~l~~~~~~l--~~g~~i~~~G~~~~g--~~s~~k~~~~~~~~~~~~~ar~~~l~~~~~~~~~ 151 (342)
T PRK09489 76 DCDTLIYYWPKNKQEAQFQLMNLLSLL--PVGTDIFVVGENRSG--VRSAEKMLADYAPLNKIDSARRCGLYHGRLEKQP 151 (342)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhC--CCCCEEEEEEecccc--HHHHHHHHHHhcCccccccceeEEEEEEeccccC
Confidence 344568999999999999998887732 236778899999999 24444544443321100000 000010
Q ss_pred -HhhhhccccccccccccccCccccccc-ChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC-cE
Q 018970 107 -REGISYWEGVEASVDGVLGGFGNVNEV-DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EV 183 (348)
Q Consensus 107 -~~~~~yW~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-~v 183 (348)
-+..+||...... +-.+...++++.. .+.....++...+.. ....+|||+|||+|.++..++.+.+. +|
T Consensus 152 ~~~~~~~~~~y~~~-~l~i~~~pgvFs~~~lD~gt~lLl~~l~~-------~~~g~VLDlGCG~G~ls~~la~~~p~~~v 223 (342)
T PRK09489 152 VFDADKFWKEYQVD-GLTVKTLPGVFSRDGLDVGSQLLLSTLTP-------HTKGKVLDVGCGAGVLSAVLARHSPKIRL 223 (342)
T ss_pred CCcccccceeeecC-CEEEEeCCCCCCCCCCCHHHHHHHHhccc-------cCCCeEEEeccCcCHHHHHHHHhCCCCEE
Confidence 1124455533210 1012223344444 334444555444432 23458999999999999999987664 79
Q ss_pred EEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCCh---hhHHHHHHHHHHcCC
Q 018970 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAKVGLK 260 (348)
Q Consensus 184 ~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~---~d~~~~l~~~~~~Lk 260 (348)
+++|+|+.|++.+++++...++ ...+...|..+.. .++||+|+++..+|+... +....+++++.+.||
T Consensus 224 ~~vDis~~Al~~A~~nl~~n~l-------~~~~~~~D~~~~~--~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lk 294 (342)
T PRK09489 224 TLSDVSAAALESSRATLAANGL-------EGEVFASNVFSDI--KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLN 294 (342)
T ss_pred EEEECCHHHHHHHHHHHHHcCC-------CCEEEEccccccc--CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcC
Confidence 9999999999999998876432 2456666765432 478999999999986432 356889999999999
Q ss_pred CCcEEEEEec
Q 018970 261 PGGFFVLKEN 270 (348)
Q Consensus 261 pgG~lii~~~ 270 (348)
|||.|++..+
T Consensus 295 pgG~L~iVan 304 (342)
T PRK09489 295 SGGELRIVAN 304 (342)
T ss_pred cCCEEEEEEe
Confidence 9999999865
No 57
>PRK05785 hypothetical protein; Provisional
Probab=99.62 E-value=1.2e-15 Score=137.35 Aligned_cols=90 Identities=10% Similarity=0.098 Sum_probs=78.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~ 236 (348)
++.+|||||||+|.++..++.....+|+|+|+|++|++.|+++. .+.++|++++++++++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------------~~~~~d~~~lp~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------------DKVVGSFEALPFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------------ceEEechhhCCCCCCCEEEEEe
Confidence 46799999999999999998774336999999999999997641 2467888999988899999999
Q ss_pred chhhhcCChhhHHHHHHHHHHcCCCC
Q 018970 237 QWCIGHLTDDDFVSFFKRAKVGLKPG 262 (348)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~~~Lkpg 262 (348)
..+++|++ |+..++++++|+|||.
T Consensus 117 ~~~l~~~~--d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 117 SFALHASD--NIEKVIAEFTRVSRKQ 140 (226)
T ss_pred cChhhccC--CHHHHHHHHHHHhcCc
Confidence 99999998 7889999999999995
No 58
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.61 E-value=1.9e-14 Score=128.61 Aligned_cols=147 Identities=11% Similarity=-0.040 Sum_probs=106.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCC------CCcCCCcceeEEEcCCCCCCCC-C
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENH------MAPDMHKATNFFCVPLQDFTPE-T 228 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~------~~~~~~~~i~~~~~d~~~~~~~-~ 228 (348)
.++.+|||+|||.|..+..|+++++. |+++|+|+.+++.+.+...-... .......++++.++|+.++... .
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~-V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHE-VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCe-EEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 45679999999999999999998886 99999999999987542211000 0000135689999999988643 2
Q ss_pred CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK 307 (348)
Q Consensus 229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~ 307 (348)
+.||+|+...+++|++.+....+++.+.++|+|||.+++......... .....+..+.+++.++|.. +|++....
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~---~~gPp~~~~~~el~~~~~~-~~~i~~~~ 189 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE---LAGPPFSVSDEEVEALYAG-CFEIELLE 189 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc---CCCCCCCCCHHHHHHHhcC-CceEEEee
Confidence 589999999999999988889999999999999996554322211111 0112245789999999964 36655544
No 59
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.61 E-value=3e-14 Score=124.19 Aligned_cols=124 Identities=21% Similarity=0.203 Sum_probs=100.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
+++.+|||+|||+|..+..++..... +|+++|+|+.|++.|++++...++ .++++...|+.++.. .++||+|
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l------~~i~~~~~d~~~~~~-~~~fDlV 116 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL------KNVTVVHGRAEEFGQ-EEKFDVV 116 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC------CCEEEEeccHhhCCC-CCCccEE
Confidence 44789999999999999988865443 799999999999999998876543 348999999988776 5799999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK 307 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~ 307 (348)
+++. +. ++..+++.++++|||||.+++.... .....+.++.+..|+.+....
T Consensus 117 ~~~~----~~--~~~~~l~~~~~~LkpGG~lv~~~~~---------------~~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 117 TSRA----VA--SLSDLVELCLPLLKPGGRFLALKGR---------------DPEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred EEcc----cc--CHHHHHHHHHHhcCCCeEEEEEeCC---------------ChHHHHHHHHHhcCceEeeeE
Confidence 9864 22 5778999999999999999988532 124457888888899976643
No 60
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.59 E-value=2.2e-14 Score=124.69 Aligned_cols=123 Identities=20% Similarity=0.183 Sum_probs=94.6
Q ss_pred CCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (348)
Q Consensus 158 ~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~ 236 (348)
+.+|||+|||+|.++..++..... .|+++|+|+.|++.++++....++ .++++.++|+.++.. .++||+|++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~------~~i~~i~~d~~~~~~-~~~fD~I~s 115 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL------NNVEIVNGRAEDFQH-EEQFDVITS 115 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC------CCeEEEecchhhccc-cCCccEEEe
Confidence 679999999999999988766543 799999999999999988765432 358999999988753 478999998
Q ss_pred chhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHh---cCCeEEEEee
Q 018970 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSR---CGLHIYKSKD 308 (348)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~---aGf~~v~~~~ 308 (348)
.. ++ ++..+++.+.++|+|||.+++.... ....++..+.++ .||+.++...
T Consensus 116 ~~-~~-----~~~~~~~~~~~~LkpgG~lvi~~~~---------------~~~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 116 RA-LA-----SLNVLLELTLNLLKVGGYFLAYKGK---------------KYLDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred hh-hh-----CHHHHHHHHHHhcCCCCEEEEEcCC---------------CcHHHHHHHHHhhhhcCceEeeccc
Confidence 76 43 4557889999999999999986421 123345555555 7999887654
No 61
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.59 E-value=8.4e-15 Score=123.15 Aligned_cols=129 Identities=16% Similarity=0.260 Sum_probs=105.6
Q ss_pred cEEEEeccccHHHHHHHHhCCCc-EEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeech
Q 018970 160 VALDCGSGIGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (348)
Q Consensus 160 ~VLDvGcG~G~~~~~la~~~~~~-v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~ 238 (348)
+|||+|||+|.+...|++.+++. ++|+|.|+++++.|+..+...+. ...|.|.+.|+.+-....+.||+|.--.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~-----~n~I~f~q~DI~~~~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF-----SNEIRFQQLDITDPDFLSGQFDLVLDKG 144 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC-----CcceeEEEeeccCCcccccceeEEeecC
Confidence 99999999999999999998884 99999999999999998877655 3449999999988665568899998655
Q ss_pred hhhcCC------hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970 239 CIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD 308 (348)
Q Consensus 239 ~l~~~~------~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~ 308 (348)
++..+. ...+..++..+.++|+|||+|+|.. +.++.+++.+.|+..||++.....
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS---------------CN~T~dELv~~f~~~~f~~~~tvp 205 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS---------------CNFTKDELVEEFENFNFEYLSTVP 205 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe---------------cCccHHHHHHHHhcCCeEEEEeec
Confidence 544332 1335668899999999999999874 236788999999999999877553
No 62
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.59 E-value=1.2e-14 Score=133.69 Aligned_cols=114 Identities=19% Similarity=0.307 Sum_probs=88.8
Q ss_pred CCCCcEEEEeccccH----HHHHHHHhCC------CcEEEEcCCHHHHHHHHHHhCCC----CCC---------------
Q 018970 156 NQHLVALDCGSGIGR----ITKNLLIRYF------NEVDLLEPVSHFLDAARESLAPE----NHM--------------- 206 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~----~~~~la~~~~------~~v~~vD~S~~~l~~a~~~~~~~----~~~--------------- 206 (348)
.++.+|||+|||+|. ++..+++.+. .+|+|+|+|+.|++.|++.+-.. ++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 456799999999996 4555554332 26999999999999999754110 000
Q ss_pred --CcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 207 --APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 207 --~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
......++.|.+.|+.+.+++.++||+|+|.++++|+++++...++++++++|+|||+|++..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 001124689999999998766689999999999999998788899999999999999999964
No 63
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.59 E-value=2.5e-14 Score=128.26 Aligned_cols=143 Identities=18% Similarity=0.270 Sum_probs=109.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-CCceeEEe
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~Ii 235 (348)
.+.+|||+|||+|.++..++..+. .++++|+|+.+++.+++++...+. .++.+...|+.+++.. .++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPL------LKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHHhhcCCCCCccEEE
Confidence 467999999999999998887666 499999999999999988765321 1578888888776543 37899999
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCC-C---------cee---cCCC--CceecCHHHHHHHHHhcC
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS-G---------FVL---DKED--RSITRSDFYFKELFSRCG 300 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~-~---------~~~---d~~~--~~~~~s~~~l~~l~~~aG 300 (348)
+..+++|+. ++..+++.+.++|+|||.+++....... . +.. .... ....++.+++.++++++|
T Consensus 118 ~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 195 (224)
T TIGR01983 118 CMEVLEHVP--DPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAG 195 (224)
T ss_pred ehhHHHhCC--CHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcC
Confidence 999999998 7789999999999999999987643211 0 000 0111 112247788999999999
Q ss_pred CeEEEEee
Q 018970 301 LHIYKSKD 308 (348)
Q Consensus 301 f~~v~~~~ 308 (348)
|++++...
T Consensus 196 ~~i~~~~~ 203 (224)
T TIGR01983 196 LRVKDVKG 203 (224)
T ss_pred Ceeeeeee
Confidence 99988653
No 64
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.57 E-value=1.1e-14 Score=124.84 Aligned_cols=146 Identities=22% Similarity=0.303 Sum_probs=109.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCccee-EEEcCCCCCC-CCCCceeE
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN-FFCVPLQDFT-PETGRYDV 233 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~-~~~~d~~~~~-~~~~~fD~ 233 (348)
.....|||||||||..-.++-..-...|+++|+++.|-+.+.+.+.+.. ..++. |..++.++++ .++++||+
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k------~~~~~~fvva~ge~l~~l~d~s~Dt 148 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK------PLQVERFVVADGENLPQLADGSYDT 148 (252)
T ss_pred cCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc------CcceEEEEeechhcCcccccCCeee
Confidence 3445689999999988765432223379999999999999998887642 23455 8889999988 67799999
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCC-Cc---ee----cC----CCCceecCHHHHHHHHHhcCC
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS-GF---VL----DK----EDRSITRSDFYFKELFSRCGL 301 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~-~~---~~----d~----~~~~~~~s~~~l~~l~~~aGf 301 (348)
|++..+|+-.. ++.+.|+++.++|+|||.+++.|+.... ++ ++ +. .......+.+ ..+.++++-|
T Consensus 149 VV~TlvLCSve--~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd-~~e~Leda~f 225 (252)
T KOG4300|consen 149 VVCTLVLCSVE--DPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRD-TGELLEDAEF 225 (252)
T ss_pred EEEEEEEeccC--CHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehh-HHHHhhhccc
Confidence 99999999888 8899999999999999999999877543 22 11 11 1122233443 5678889999
Q ss_pred eEEEEeecC
Q 018970 302 HIYKSKDQK 310 (348)
Q Consensus 302 ~~v~~~~~~ 310 (348)
..+...+..
T Consensus 226 ~~~~~kr~~ 234 (252)
T KOG4300|consen 226 SIDSCKRFN 234 (252)
T ss_pred ccchhhccc
Confidence 988766543
No 65
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.6e-14 Score=132.05 Aligned_cols=217 Identities=19% Similarity=0.175 Sum_probs=146.6
Q ss_pred CCcchhhhhhhhhhHhhhhhcccCCCCCCCCcccccccCCCCCCCcccCHHHHHHHhhcCCcc--chhhhhhHHHh----
Q 018970 35 KPTLHLLHVGRRKEKLRSAEAGAAADPKHKESSAMEVSGLDSDGKEFKNAEEMWREQIGEDGE--QQEKKTQWYRE---- 108 (348)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~l~~~~~--~~~~~~~~y~~---- 108 (348)
....-|+.||+.|.+++..++.+.+.- |..+.+.+.|.+.+| ..+...|..+-.+.... ..+....||..
T Consensus 37 ~~d~~l~~~pK~~~e~e~qLa~ll~~~--~~g~~i~v~g~~~~g--~~s~~k~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (300)
T COG2813 37 DFDAVLLYWPKHKAEAEFQLAQLLARL--PPGGEIVVVGEKRDG--VRSAEKMLEKYGGPTKTDSARHCMRLHYYSENPP 112 (300)
T ss_pred CCCEEEEEccCchHHHHHHHHHHHhhC--CCCCeEEEEecccch--HHHHHHHHHHhcCccccchHhhcceeEeecCCCC
Confidence 455668899999999999988877744 124566678888888 44455555554433211 22222233321
Q ss_pred ---hhhccccccccccccccCccccccc-ChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC-cE
Q 018970 109 ---GISYWEGVEASVDGVLGGFGNVNEV-DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EV 183 (348)
Q Consensus 109 ---~~~yW~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-~v 183 (348)
...+|.......+..+.+-+++++. .++...++|...+.. ....+|||+|||.|.++..+++..+. ++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~-------~~~~~vlDlGCG~Gvlg~~la~~~p~~~v 185 (300)
T COG2813 113 PFADEPEWKVYLLGHELTFKTLPGVFSRDKLDKGSRLLLETLPP-------DLGGKVLDLGCGYGVLGLVLAKKSPQAKL 185 (300)
T ss_pred cccchhhhhhhhccCceEEEeCCCCCcCCCcChHHHHHHHhCCc-------cCCCcEEEeCCCccHHHHHHHHhCCCCeE
Confidence 1334443332333344445566665 566677777776653 34459999999999999999988875 89
Q ss_pred EEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhh---HHHHHHHHHHcCC
Q 018970 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDD---FVSFFKRAKVGLK 260 (348)
Q Consensus 184 ~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d---~~~~l~~~~~~Lk 260 (348)
+.+|+|..+++.|++++...+. .+..+...|+.+- .+ ++||+|+|+..||--..-. ...+++...+.|+
T Consensus 186 tmvDvn~~Av~~ar~Nl~~N~~------~~~~v~~s~~~~~-v~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~ 257 (300)
T COG2813 186 TLVDVNARAVESARKNLAANGV------ENTEVWASNLYEP-VE-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLK 257 (300)
T ss_pred EEEecCHHHHHHHHHhHHHcCC------CccEEEEeccccc-cc-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhc
Confidence 9999999999999999876433 2223444454332 22 4899999999999654311 3479999999999
Q ss_pred CCcEEEEEec
Q 018970 261 PGGFFVLKEN 270 (348)
Q Consensus 261 pgG~lii~~~ 270 (348)
+||.|.|..+
T Consensus 258 ~gGeL~iVan 267 (300)
T COG2813 258 PGGELWIVAN 267 (300)
T ss_pred cCCEEEEEEc
Confidence 9999999876
No 66
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.56 E-value=7.7e-15 Score=126.70 Aligned_cols=162 Identities=20% Similarity=0.245 Sum_probs=121.0
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
..+..+|.|+|||+|..+..|+++.+. .++|+|.|++|++.|+++. .+++|..+|+.+|.++ ...|+
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----------p~~~f~~aDl~~w~p~-~~~dl 95 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----------PDATFEEADLRTWKPE-QPTDL 95 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----------CCCceecccHhhcCCC-Cccch
Confidence 567789999999999999999998877 8999999999999998885 4589999999999876 68999
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe--cccCCCc----------eecC------CCCceecCHHHHHHH
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE--NIARSGF----------VLDK------EDRSITRSDFYFKEL 295 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~--~~~~~~~----------~~d~------~~~~~~~s~~~l~~l 295 (348)
++++.+|+.++ |-..+|.++...|.|||+|.+.- |..+... .+.. .......+...+.++
T Consensus 96 lfaNAvlqWlp--dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~l 173 (257)
T COG4106 96 LFANAVLQWLP--DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYEL 173 (257)
T ss_pred hhhhhhhhhcc--ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHH
Confidence 99999999999 66789999999999999999963 2211110 0100 012233578888999
Q ss_pred HHhcCCeEEEEeecCC--CCc---cceEEEEEEEeecCCC
Q 018970 296 FSRCGLHIYKSKDQKG--LPE---ELFAVKMYALTAEMPR 330 (348)
Q Consensus 296 ~~~aGf~~v~~~~~~~--~~~---~l~~v~~~~l~~~~~~ 330 (348)
+...+-++.-+...+. .+. ..-=++.-+|+|+...
T Consensus 174 La~~~~rvDiW~T~Y~h~l~~a~aIvdWvkgTgLrP~L~~ 213 (257)
T COG4106 174 LAPLACRVDIWHTTYYHQLPGADAIVDWVKGTGLRPYLDR 213 (257)
T ss_pred hCcccceeeeeeeeccccCCCccchhhheeccccceeccc
Confidence 9988877665554332 222 1123455677776543
No 67
>PRK06922 hypothetical protein; Provisional
Probab=99.56 E-value=2.6e-14 Score=143.12 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=90.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCcee
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD 232 (348)
.++.+|||+|||+|.++..++...+. .|+|+|+|+.|++.|+++.... ..++.+.++|+.+++ +++++||
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~-------g~~ie~I~gDa~dLp~~fedeSFD 489 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE-------GRSWNVIKGDAINLSSSFEKESVD 489 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-------CCCeEEEEcchHhCccccCCCCEE
Confidence 35679999999999999888876544 8999999999999999876542 235778888988876 5668999
Q ss_pred EEeechhhhcCC-----------hhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970 233 VIWVQWCIGHLT-----------DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (348)
Q Consensus 233 ~Ii~~~~l~~~~-----------~~d~~~~l~~~~~~LkpgG~lii~~~~ 271 (348)
+|+++.++|++. .+++..++++++++|||||.+++.+..
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 999999998752 357889999999999999999998753
No 68
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.56 E-value=1e-13 Score=121.12 Aligned_cols=125 Identities=16% Similarity=0.228 Sum_probs=96.8
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
+.++.+|||+|||+|.++..++..++. +|+++|+|+.+++.|++++...++ .++++.+.|... .. .++||+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~------~~i~~~~~d~~~-~~-~~~~D~ 100 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC------GNIDIIPGEAPI-EL-PGKADA 100 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------CCeEEEecCchh-hc-CcCCCE
Confidence 456789999999999999999877654 799999999999999988765432 357888887642 22 268999
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKS 306 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~ 306 (348)
|++....+ .+..+++.+.++|+|||.+++..... -+.+++.+++++.||+.++.
T Consensus 101 v~~~~~~~-----~~~~~l~~~~~~Lk~gG~lv~~~~~~--------------~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 101 IFIGGSGG-----NLTAIIDWSLAHLHPGGRLVLTFILL--------------ENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred EEECCCcc-----CHHHHHHHHHHhcCCCeEEEEEEecH--------------hhHHHHHHHHHHCCCCcceE
Confidence 99976544 35578999999999999998864211 23467888999999976663
No 69
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.55 E-value=1.2e-13 Score=121.53 Aligned_cols=137 Identities=12% Similarity=-0.019 Sum_probs=97.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CC-CCCCceeE
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-PETGRYDV 233 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~-~~~~~fD~ 233 (348)
+++.+|||+|||+|.++..++......++++|+|+.|++.++++ ++++...|+.+ ++ .++++||+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------------~~~~~~~d~~~~l~~~~~~sfD~ 78 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------------GVNVIQGDLDEGLEAFPDKSFDY 78 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------------CCeEEEEEhhhcccccCCCCcCE
Confidence 45679999999999999988765444689999999999988642 25677777765 32 44578999
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc----------CCC-c--------eecCCCCceecCHHHHHH
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA----------RSG-F--------VLDKEDRSITRSDFYFKE 294 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~----------~~~-~--------~~d~~~~~~~~s~~~l~~ 294 (348)
|+++.+++|++ ++..+++++.+.+++ +++..+.. ..+ . .+-........+.+++.+
T Consensus 79 Vi~~~~l~~~~--d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 153 (194)
T TIGR02081 79 VILSQTLQATR--NPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFED 153 (194)
T ss_pred EEEhhHhHcCc--CHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHH
Confidence 99999999998 778999999887664 33321110 000 0 000011112358999999
Q ss_pred HHHhcCCeEEEEeecC
Q 018970 295 LFSRCGLHIYKSKDQK 310 (348)
Q Consensus 295 l~~~aGf~~v~~~~~~ 310 (348)
+++++||++++.....
T Consensus 154 ll~~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 154 LCGELNLRILDRAAFD 169 (194)
T ss_pred HHHHCCCEEEEEEEec
Confidence 9999999999866553
No 70
>PRK04266 fibrillarin; Provisional
Probab=99.55 E-value=1.6e-13 Score=123.13 Aligned_cols=144 Identities=14% Similarity=0.056 Sum_probs=101.2
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC----CCCCC
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPETG 229 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~~ 229 (348)
+.++.+|||+|||+|.++..++.... ..|+++|+|+.|++.+.+++.. ..++.+..+|+.+. +.. +
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~--------~~nv~~i~~D~~~~~~~~~l~-~ 140 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE--------RKNIIPILADARKPERYAHVV-E 140 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh--------cCCcEEEECCCCCcchhhhcc-c
Confidence 67888999999999999999987643 3699999999999988777654 24678888887642 122 5
Q ss_pred ceeEEeechhhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970 230 RYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD 308 (348)
Q Consensus 230 ~fD~Ii~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~ 308 (348)
+||+|++. +.+ .....+++++.++|||||.|++.-.... .|......... +...++++++||++++...
T Consensus 141 ~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~----~d~~~~~~~~~-~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 141 KVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARS----IDVTKDPKEIF-KEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred cCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEeccc----ccCcCCHHHHH-HHHHHHHHHcCCeEEEEEc
Confidence 69999853 222 1234578999999999999999522111 11111111112 3456999999999999888
Q ss_pred cCCCCccce
Q 018970 309 QKGLPEELF 317 (348)
Q Consensus 309 ~~~~~~~l~ 317 (348)
...+..+.|
T Consensus 211 l~p~~~~h~ 219 (226)
T PRK04266 211 LEPYHKDHA 219 (226)
T ss_pred CCCCcCCeE
Confidence 776655543
No 71
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.54 E-value=2.8e-14 Score=126.25 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=96.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCC-CCCC--CCCCcee
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-QDFT--PETGRYD 232 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~--~~~~~fD 232 (348)
++.+|||+|||+|.++..++...+. .|+++|+|+.|++.|++++...++ .++.+.+.|+ +.++ .++++||
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL------TNLRLLCGDAVEVLLDMFPDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC------CCEEEEecCHHHHHHHHcCccccc
Confidence 4578999999999999999877543 799999999999999988765322 4688999998 6655 4567899
Q ss_pred EEeechhhhcCC------hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEE
Q 018970 233 VIWVQWCIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIY 304 (348)
Q Consensus 233 ~Ii~~~~l~~~~------~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v 304 (348)
+|+++....+.. ......+++++.++|||||.|++..... .-..++.+.++..|+.+.
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~--------------~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE--------------GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH--------------HHHHHHHHHHHhCccccc
Confidence 999876543221 1124679999999999999999975321 112357778888898755
No 72
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.54 E-value=3e-13 Score=126.88 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=84.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-CCCCC---
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETG--- 229 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~--- 229 (348)
.++.+|||+|||+|..+..|++... ..|+++|+|+.|++.+++++.... ...++.++++|+.+. +....
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~-----p~~~v~~i~gD~~~~~~~~~~~~~ 136 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY-----PQLEVHGICADFTQPLALPPEPAA 136 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC-----CCceEEEEEEcccchhhhhccccc
Confidence 4567899999999999999998753 369999999999999988865421 023567788998763 32211
Q ss_pred -ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970 230 -RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (348)
Q Consensus 230 -~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii 267 (348)
...++++..+++++++++...+|++++++|+|||.|++
T Consensus 137 ~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 137 GRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred CCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 33455666789999988899999999999999999996
No 73
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.53 E-value=1.8e-13 Score=110.66 Aligned_cols=104 Identities=18% Similarity=0.098 Sum_probs=82.4
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-CCCCCcee
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-TPETGRYD 232 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD 232 (348)
+.++.+|||+|||+|.++..++...+. .|+++|+|+.+++.+++++...+. .++++...|+... +...++||
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV------SNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC------CceEEEeccccccChhhcCCCC
Confidence 455679999999999999999977543 799999999999999988765432 3577888877652 22236899
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+|++....+ ....+++.+.+.|||||.|++.-
T Consensus 91 ~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 91 RVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred EEEECCcch-----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 999976544 45689999999999999999863
No 74
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.52 E-value=1.9e-13 Score=124.89 Aligned_cols=123 Identities=17% Similarity=0.129 Sum_probs=93.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
.++.+|||+|||+|.++..++..+...|+++|+|+.+++.|++++...++ ...+.+... +.+||+|+
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~-----~~~~~~~~~--------~~~fD~Vv 184 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGV-----ELNVYLPQG--------DLKADVIV 184 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC-----CceEEEccC--------CCCcCEEE
Confidence 46789999999999999987766665799999999999999998865432 112222221 12799999
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecC
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQK 310 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~ 310 (348)
++...+ .+..+++++.++|||||.++++.... ...+.+.+.+++.||+++......
T Consensus 185 ani~~~-----~~~~l~~~~~~~LkpgG~lilsgi~~--------------~~~~~v~~~l~~~Gf~~~~~~~~~ 240 (250)
T PRK00517 185 ANILAN-----PLLELAPDLARLLKPGGRLILSGILE--------------EQADEVLEAYEEAGFTLDEVLERG 240 (250)
T ss_pred EcCcHH-----HHHHHHHHHHHhcCCCcEEEEEECcH--------------hhHHHHHHHHHHCCCEEEEEEEeC
Confidence 875432 45678999999999999999986432 235678899999999998876654
No 75
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.52 E-value=1.7e-13 Score=118.04 Aligned_cols=122 Identities=23% Similarity=0.254 Sum_probs=95.0
Q ss_pred ChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCc
Q 018970 134 DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHK 212 (348)
Q Consensus 134 ~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~ 212 (348)
.+.....+|.+.+... +..+|||+|||+|.++..++..++. .|+++|+|+.+++.+++++...++ .
T Consensus 15 ~~d~~t~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~-----~- 81 (170)
T PF05175_consen 15 RLDAGTRLLLDNLPKH-------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL-----E- 81 (170)
T ss_dssp SHHHHHHHHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC-----T-
T ss_pred CCCHHHHHHHHHHhhc-------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc-----c-
Confidence 3555566777766542 5578999999999999999988776 799999999999999999876543 2
Q ss_pred ceeEEEcCCCCCCCCCCceeEEeechhhhcCCh---hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 213 ATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTD---DDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 213 ~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~---~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
++++...|+.+... .++||+|+++..++.-.+ +-...+++.+.+.|||||.+++..
T Consensus 82 ~v~~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 82 NVEVVQSDLFEALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TEEEEESSTTTTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccccccccccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 28888888876443 479999999998876653 236789999999999999997754
No 76
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.50 E-value=3.8e-13 Score=125.48 Aligned_cols=129 Identities=14% Similarity=0.168 Sum_probs=96.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
.++.+|||+|||+|.++..++..+...|+++|+|+.+++.|++++...++ ...+.+...+.... ..++||+|+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~-----~~~~~~~~~~~~~~--~~~~fDlVv 230 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQV-----SDRLQVKLIYLEQP--IEGKADVIV 230 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEecccccc--cCCCceEEE
Confidence 35689999999999999988876666899999999999999998875433 23355555553322 246899999
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCC
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKG 311 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~ 311 (348)
++...+ .+..++.++.++|||||.|+++.... ...+.+.+.+++. |+++.......
T Consensus 231 an~~~~-----~l~~ll~~~~~~LkpgG~li~sgi~~--------------~~~~~v~~~~~~~-f~~~~~~~~~~ 286 (288)
T TIGR00406 231 ANILAE-----VIKELYPQFSRLVKPGGWLILSGILE--------------TQAQSVCDAYEQG-FTVVEIRQREE 286 (288)
T ss_pred EecCHH-----HHHHHHHHHHHHcCCCcEEEEEeCcH--------------hHHHHHHHHHHcc-CceeeEeccCC
Confidence 976543 45689999999999999999986432 2345677888776 98887665543
No 77
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.50 E-value=5.9e-13 Score=118.81 Aligned_cols=166 Identities=19% Similarity=0.200 Sum_probs=116.3
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCC-CCCCCc-----CCCcceeEEEcCCCCCCCCC
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP-ENHMAP-----DMHKATNFFCVPLQDFTPET 228 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~-~~~~~~-----~~~~~i~~~~~d~~~~~~~~ 228 (348)
..++.+||..|||.|.....|++++++ |+|+|+|+.+++.+.+.... ...... ....++++.++|+.+++...
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G~~-VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQGHD-VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTTEE-EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCCCe-EEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 466779999999999999999999885 99999999999998543321 000000 11246899999999987543
Q ss_pred -CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970 229 -GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK 307 (348)
Q Consensus 229 -~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~ 307 (348)
++||+|+-..+|+.++++...++.+.+.++|+|||.+++....... .+.....+..+.+++.++|. .+|++....
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~---~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQ---GEMEGPPFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-C---SCSSSSS----HHHHHHHHT-TTEEEEEEE
T ss_pred cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCC---cCCCCcCCCCCHHHHHHHhc-CCcEEEEEe
Confidence 5899999999999999999999999999999999994443221110 11123345578899999999 799988866
Q ss_pred ecCCCCc---------cceEEEEEEEe
Q 018970 308 DQKGLPE---------ELFAVKMYALT 325 (348)
Q Consensus 308 ~~~~~~~---------~l~~v~~~~l~ 325 (348)
.....+. ..+..+.|.|+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~e~~~~l~ 216 (218)
T PF05724_consen 190 EEDSIEEEPRFKSWGLSRFREKVYVLR 216 (218)
T ss_dssp EEE-TTT-HHHHCCT-SS-EEEEEEEE
T ss_pred cccccccccchhhcCcCceeEEEEEEE
Confidence 5433322 56788888876
No 78
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.49 E-value=4.1e-13 Score=128.73 Aligned_cols=132 Identities=19% Similarity=0.169 Sum_probs=97.3
Q ss_pred cccccc-ChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCC
Q 018970 128 GNVNEV-DIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENH 205 (348)
Q Consensus 128 ~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~ 205 (348)
+++|.. .++...+++...+.. ....+|||+|||+|.++..++.+++. +|+++|+|+.|++.|++++...+.
T Consensus 205 ~gVFs~~~LD~GtrllL~~lp~-------~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~ 277 (378)
T PRK15001 205 ANVFSRTGLDIGARFFMQHLPE-------NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP 277 (378)
T ss_pred CCccCCCCcChHHHHHHHhCCc-------ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCc
Confidence 445554 355556666655532 23468999999999999999988765 899999999999999998754321
Q ss_pred CCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcC---ChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970 206 MAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHL---TDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (348)
Q Consensus 206 ~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~---~~~d~~~~l~~~~~~LkpgG~lii~~~ 270 (348)
. ...++++...|..+.. +.++||+|+++..+|.. ++.....+++.+.++|+|||.|++..+
T Consensus 278 ~---~~~~v~~~~~D~l~~~-~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 278 E---ALDRCEFMINNALSGV-EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred c---cCceEEEEEccccccC-CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 0 0135788888775432 23589999999888754 333456899999999999999999863
No 79
>PTZ00146 fibrillarin; Provisional
Probab=99.48 E-value=2.5e-12 Score=118.32 Aligned_cols=145 Identities=13% Similarity=-0.018 Sum_probs=100.8
Q ss_pred cCCccCCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC---
Q 018970 150 FPNARNNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--- 224 (348)
Q Consensus 150 l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~--- 224 (348)
+....+.++.+|||+|||+|.++..++.... ..|+++|+|+.|++...+.+.. ..|+.++..|+...
T Consensus 125 ~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~--------r~NI~~I~~Da~~p~~y 196 (293)
T PTZ00146 125 VANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK--------RPNIVPIIEDARYPQKY 196 (293)
T ss_pred cceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--------cCCCEEEECCccChhhh
Confidence 3334478889999999999999999997743 2799999999876555554432 24678888887542
Q ss_pred CCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHH----HHHHHhcC
Q 018970 225 TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYF----KELFSRCG 300 (348)
Q Consensus 225 ~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l----~~l~~~aG 300 (348)
....++||+|++.... + ++...++.++.++|||||.|+|...... .....+.+++ .+.|+++|
T Consensus 197 ~~~~~~vDvV~~Dva~---p-dq~~il~~na~r~LKpGG~~vI~ika~~---------id~g~~pe~~f~~ev~~L~~~G 263 (293)
T PTZ00146 197 RMLVPMVDVIFADVAQ---P-DQARIVALNAQYFLKNGGHFIISIKANC---------IDSTAKPEVVFASEVQKLKKEG 263 (293)
T ss_pred hcccCCCCEEEEeCCC---c-chHHHHHHHHHHhccCCCEEEEEEeccc---------cccCCCHHHHHHHHHHHHHHcC
Confidence 1123579999987641 2 2556777899999999999999532111 1111223332 37899999
Q ss_pred CeEEEEeecCCCCcc
Q 018970 301 LHIYKSKDQKGLPEE 315 (348)
Q Consensus 301 f~~v~~~~~~~~~~~ 315 (348)
|++++......+...
T Consensus 264 F~~~e~v~L~Py~~~ 278 (293)
T PTZ00146 264 LKPKEQLTLEPFERD 278 (293)
T ss_pred CceEEEEecCCccCC
Confidence 999998887766554
No 80
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.48 E-value=3.6e-13 Score=119.47 Aligned_cols=102 Identities=16% Similarity=0.117 Sum_probs=82.6
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (348)
+.++.+|||+|||+|..+..++.... ..|+++|+++.+++.|++++...++ ..++++..+|+.+.....++||
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~-----~~~v~~~~~d~~~~~~~~~~fD 144 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY-----WGVVEVYHGDGKRGLEKHAPFD 144 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----CCcEEEEECCcccCCccCCCcc
Confidence 46778999999999999988876532 3799999999999999998876443 2358899999877544457899
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+|++..++++++ +++.+.|+|||.|++..
T Consensus 145 ~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 145 AIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 999999888766 35778999999998854
No 81
>PRK14967 putative methyltransferase; Provisional
Probab=99.46 E-value=1.3e-12 Score=117.39 Aligned_cols=107 Identities=15% Similarity=0.048 Sum_probs=82.7
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
..++.+|||+|||+|.++..++..+..+|+++|+|+.+++.+++++...+ .++.+...|+.+.. .+++||+|
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~-------~~~~~~~~d~~~~~-~~~~fD~V 105 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAG-------VDVDVRRGDWARAV-EFRPFDVV 105 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhC-------CeeEEEECchhhhc-cCCCeeEE
Confidence 45667999999999999998887655579999999999999998875432 24778888886643 34689999
Q ss_pred eechhhhcCCh-------------------hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 235 WVQWCIGHLTD-------------------DDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 235 i~~~~l~~~~~-------------------~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+++..+..... ..+..+++++.++|||||.+++..
T Consensus 106 i~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 106 VSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred EECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99865433211 125678899999999999999864
No 82
>PLN03075 nicotianamine synthase; Provisional
Probab=99.46 E-value=4.2e-13 Score=123.85 Aligned_cols=108 Identities=18% Similarity=0.229 Sum_probs=88.7
Q ss_pred CCCCcEEEEeccccHHHHHHHH-hC-CC-cEEEEcCCHHHHHHHHHHhCC-CCCCCcCCCcceeEEEcCCCCCCCCCCce
Q 018970 156 NQHLVALDCGSGIGRITKNLLI-RY-FN-EVDLLEPVSHFLDAARESLAP-ENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~-~~-~~-~v~~vD~S~~~l~~a~~~~~~-~~~~~~~~~~~i~~~~~d~~~~~~~~~~f 231 (348)
.++.+|+|||||.|.++..++. .. +. .++++|+++++++.|++.+.. .++ ..+++|...|+.+.....+.|
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-----~~rV~F~~~Da~~~~~~l~~F 196 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-----SKRMFFHTADVMDVTESLKEY 196 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-----cCCcEEEECchhhcccccCCc
Confidence 3668999999998866554443 33 33 699999999999999999853 333 567999999998865334789
Q ss_pred eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
|+|++. +++++..++...+++++.+.|+|||.+++..
T Consensus 197 DlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 197 DVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred CEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 999999 9999976688999999999999999999976
No 83
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.45 E-value=2.3e-12 Score=110.85 Aligned_cols=138 Identities=11% Similarity=-0.011 Sum_probs=103.3
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CC-CCCCcee
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-PETGRYD 232 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~-~~~~~fD 232 (348)
+.++.+|||+|||.|.+..+|.+.......|+|++++.+..+.++ .+.++++|+++ +. +++++||
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------------Gv~Viq~Dld~gL~~f~d~sFD 77 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------------GVSVIQGDLDEGLADFPDQSFD 77 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------------CCCEEECCHHHhHhhCCCCCcc
Confidence 467899999999999999998875444699999999998877654 36688888876 32 6789999
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCC-------------------CceecCCCCceecCHHHHH
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARS-------------------GFVLDKEDRSITRSDFYFK 293 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~-------------------~~~~d~~~~~~~~s~~~l~ 293 (348)
.||++.+|.++. ++..+|+++.|+ |...+++-+.... ++.+-...+....|..+++
T Consensus 78 ~VIlsqtLQ~~~--~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe 152 (193)
T PF07021_consen 78 YVILSQTLQAVR--RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFE 152 (193)
T ss_pred EEehHhHHHhHh--HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHH
Confidence 999999999999 788999999776 5566665422110 1111111222235889999
Q ss_pred HHHHhcCCeEEEEeecC
Q 018970 294 ELFSRCGLHIYKSKDQK 310 (348)
Q Consensus 294 ~l~~~aGf~~v~~~~~~ 310 (348)
++.++.|+++++.....
T Consensus 153 ~lc~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 153 DLCRELGIRIEERVFLD 169 (193)
T ss_pred HHHHHCCCEEEEEEEEc
Confidence 99999999999966543
No 84
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.8e-12 Score=119.35 Aligned_cols=132 Identities=19% Similarity=0.195 Sum_probs=101.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
.++.+|||+|||+|.+++..+.-+...|.|+|++|-+++.|++++..+++.. .+.....+....+. .++||+|+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~-----~~~~~~~~~~~~~~-~~~~DvIV 234 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVEL-----LVQAKGFLLLEVPE-NGPFDVIV 234 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCch-----hhhcccccchhhcc-cCcccEEE
Confidence 4778999999999999999998888899999999999999999987654421 12222333333332 26899999
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCCC
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGL 312 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~~ 312 (348)
+|-.-+ -+..+...+.+.|||||+++++.... ...+.+.+.+++.||+++......++
T Consensus 235 ANILA~-----vl~~La~~~~~~lkpgg~lIlSGIl~--------------~q~~~V~~a~~~~gf~v~~~~~~~eW 292 (300)
T COG2264 235 ANILAE-----VLVELAPDIKRLLKPGGRLILSGILE--------------DQAESVAEAYEQAGFEVVEVLEREEW 292 (300)
T ss_pred ehhhHH-----HHHHHHHHHHHHcCCCceEEEEeehH--------------hHHHHHHHHHHhCCCeEeEEEecCCE
Confidence 976322 46689999999999999999997432 22456889999999999998877544
No 85
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.45 E-value=3.9e-13 Score=118.23 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=84.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CCCCcee
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYD 232 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD 232 (348)
...+|||||||+|.++..++.+.+. .|+++|+|+.|++.|++++...++ .++.+.++|+.++. .+++++|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l------~ni~~i~~d~~~~~~~~~~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL------KNLHVLCGDANELLDKFFPDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC------CCEEEEccCHHHHHHhhCCCCcee
Confidence 3458999999999999999988765 799999999999999988765433 37899999987643 3346899
Q ss_pred EEeechhhhcCChh------hHHHHHHHHHHcCCCCcEEEEEe
Q 018970 233 VIWVQWCIGHLTDD------DFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~------d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
.|+++....+.... ....+++.+.++|||||.|++..
T Consensus 90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred EEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 99987654432210 02579999999999999999875
No 86
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.45 E-value=9.1e-13 Score=121.96 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=78.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC----cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFN----EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~----~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (348)
...+|||+|||+|.++..++..... .++|+|+|+.|++.|+++. .++.+..+|+.++++++++||
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------~~~~~~~~d~~~lp~~~~sfD 153 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------PQVTFCVASSHRLPFADQSLD 153 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------CCCeEEEeecccCCCcCCcee
Confidence 4568999999999999998866432 5899999999999998764 347889999999888888999
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 271 (348)
+|++... + ..++++.++|||||.|++....
T Consensus 154 ~I~~~~~----~-----~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 154 AIIRIYA----P-----CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred EEEEecC----C-----CCHHHHHhhccCCCEEEEEeCC
Confidence 9998654 2 2357899999999999997644
No 87
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.44 E-value=3e-12 Score=114.32 Aligned_cols=145 Identities=10% Similarity=-0.038 Sum_probs=108.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCC------CCCCcCCCcceeEEEcCCCCCCCC--
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE------NHMAPDMHKATNFFCVPLQDFTPE-- 227 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~------~~~~~~~~~~i~~~~~d~~~~~~~-- 227 (348)
.++.+||+.|||.|..+.+|+.+++. |+|+|+|+..++.+.+...-. +-........+++.++|+.+++..
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 45679999999999999999999997 999999999999986632110 000001135799999999998642
Q ss_pred -CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhc-CCeEEE
Q 018970 228 -TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRC-GLHIYK 305 (348)
Q Consensus 228 -~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~a-Gf~~v~ 305 (348)
.+.||+|+-..+|++++++....+.+.+.++|+|||.+++...... .....-.+..+.+++.+++... .++.+.
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~----~~~~GPPf~v~~~e~~~lf~~~~~i~~l~ 196 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD----KKSQTPPYSVTQAELIKNFSAKIKFELID 196 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC----CCCCCCCCcCCHHHHHHhccCCceEEEee
Confidence 2689999999999999998899999999999999999888753211 0012223445788899999752 455544
No 88
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.44 E-value=2.8e-12 Score=115.18 Aligned_cols=140 Identities=16% Similarity=0.094 Sum_probs=110.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--CCCcee
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYD 232 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~fD 232 (348)
....+|||+|||+|.++..++++.. ..+++||+++.|.+.|++++.-.++ ..++++++.|+.++.. ...+||
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l-----~~ri~v~~~Di~~~~~~~~~~~fD 117 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL-----EERIQVIEADIKEFLKALVFASFD 117 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc-----hhceeEehhhHHHhhhcccccccC
Confidence 3478999999999999999998744 4899999999999999999876544 6789999999999762 335799
Q ss_pred EEeechhhhcCCh----------------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHH
Q 018970 233 VIWVQWCIGHLTD----------------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELF 296 (348)
Q Consensus 233 ~Ii~~~~l~~~~~----------------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~ 296 (348)
+|+|+..+.-... -+++.+++.+..+|||||.+.+.-.. -...++.+++
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~---------------erl~ei~~~l 182 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP---------------ERLAEIIELL 182 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH---------------HHHHHHHHHH
Confidence 9999866543322 24788999999999999999987522 1234578889
Q ss_pred HhcCCeEEEEeecCCCCcc
Q 018970 297 SRCGLHIYKSKDQKGLPEE 315 (348)
Q Consensus 297 ~~aGf~~v~~~~~~~~~~~ 315 (348)
.+.+|.........+.+..
T Consensus 183 ~~~~~~~k~i~~V~p~~~k 201 (248)
T COG4123 183 KSYNLEPKRIQFVYPKIGK 201 (248)
T ss_pred HhcCCCceEEEEecCCCCC
Confidence 9989988877666655443
No 89
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.44 E-value=3.1e-12 Score=112.84 Aligned_cols=125 Identities=12% Similarity=0.123 Sum_probs=94.8
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhC-C-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCce
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRY-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~-~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~f 231 (348)
+.++.+|||+|||+|.++..++... . .+|+++|+|+.|++.+++++...++ ..++.+...|+.++. ...+.|
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----LNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCCeEEEEechhhhHhhcCCCC
Confidence 6778899999999999999887653 2 3799999999999999998766432 246788888887642 223689
Q ss_pred eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeE
Q 018970 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHI 303 (348)
Q Consensus 232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~ 303 (348)
|+|++... . .++..+++.+.++|||||.+++..... -+...+.+.+++.||..
T Consensus 113 D~V~~~~~---~--~~~~~~l~~~~~~LkpgG~lv~~~~~~--------------~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 113 DRIFIGGG---S--EKLKEIISASWEIIKKGGRIVIDAILL--------------ETVNNALSALENIGFNL 165 (198)
T ss_pred CEEEECCC---c--ccHHHHHHHHHHHcCCCcEEEEEeecH--------------HHHHHHHHHHHHcCCCe
Confidence 99998542 1 267789999999999999998743211 12456788889999853
No 90
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.43 E-value=4.8e-12 Score=115.35 Aligned_cols=131 Identities=22% Similarity=0.261 Sum_probs=99.0
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
.+.+|||+|||+|.++..++..... .++++|+|+.+++.+++++...++ .++.+...|+.+. .+.++||+|+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~-~~~~~fD~Vi 159 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL------DNVTFLQSDWFEP-LPGGKFDLIV 159 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhcc-CcCCceeEEE
Confidence 3458999999999999999977544 799999999999999998765433 3588999998663 3347899999
Q ss_pred echhhhc------CCh------------------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHH
Q 018970 236 VQWCIGH------LTD------------------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFY 291 (348)
Q Consensus 236 ~~~~l~~------~~~------------------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~ 291 (348)
++..+.. +.. .....+++++.++|+|||.+++.... ...+.
T Consensus 160 ~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~---------------~~~~~ 224 (251)
T TIGR03534 160 SNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY---------------DQGEA 224 (251)
T ss_pred ECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc---------------cHHHH
Confidence 8654332 111 11347899999999999999885321 23456
Q ss_pred HHHHHHhcCCeEEEEeec
Q 018970 292 FKELFSRCGLHIYKSKDQ 309 (348)
Q Consensus 292 l~~l~~~aGf~~v~~~~~ 309 (348)
+.++++++||+.+.....
T Consensus 225 ~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 225 VRALFEAAGFADVETRKD 242 (251)
T ss_pred HHHHHHhCCCCceEEEeC
Confidence 899999999987776543
No 91
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.43 E-value=2.3e-12 Score=115.40 Aligned_cols=142 Identities=18% Similarity=0.232 Sum_probs=105.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~ 236 (348)
...++||||+|.|.++..++ ..+++|++.|.|+.|....+++ .|...+..++...+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~-~~f~~v~aTE~S~~Mr~rL~~k---------------g~~vl~~~~w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA-PLFKEVYATEASPPMRWRLSKK---------------GFTVLDIDDWQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHH-hhcceEEeecCCHHHHHHHHhC---------------CCeEEehhhhhccCCceEEEee
Confidence 45689999999999999987 5666799999999998777653 1233455556545578999999
Q ss_pred chhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC-------------CCCceecCHHHHHHHHHhcCCeE
Q 018970 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK-------------EDRSITRSDFYFKELFSRCGLHI 303 (348)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~-------------~~~~~~~s~~~l~~l~~~aGf~~ 303 (348)
.++|.... ++..+|+.+++.|+|+|.++++-..+-.+|+... ....+--....+.+.|+.+||++
T Consensus 158 LNvLDRc~--~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v 235 (265)
T PF05219_consen 158 LNVLDRCD--RPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEV 235 (265)
T ss_pred hhhhhccC--CHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEE
Confidence 99999887 8899999999999999999997544333332211 11111112233458999999999
Q ss_pred EEEeecCCCCccc
Q 018970 304 YKSKDQKGLPEEL 316 (348)
Q Consensus 304 v~~~~~~~~~~~l 316 (348)
+.+.+.+.+++..
T Consensus 236 ~~~tr~PYLcEGD 248 (265)
T PF05219_consen 236 ERWTRLPYLCEGD 248 (265)
T ss_pred EEEeccCccccCc
Confidence 9999988877643
No 92
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.43 E-value=2.3e-12 Score=112.33 Aligned_cols=148 Identities=17% Similarity=0.130 Sum_probs=112.0
Q ss_pred cEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC--CC------CCCc
Q 018970 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TP------ETGR 230 (348)
Q Consensus 160 ~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~------~~~~ 230 (348)
+|||||||||..+.+++...+. ...-.|.++..+...+..+...++.+..... ..|+..- +. ..++
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~-----~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPL-----ALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCe-----EeecCCCCCccccccccCCCC
Confidence 5999999999999999988876 6788999998887777766655554333222 2333322 21 2468
Q ss_pred eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCcee-------c-----CCCCceecCHHHHHHHHHh
Q 018970 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVL-------D-----KEDRSITRSDFYFKELFSR 298 (348)
Q Consensus 231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~-------d-----~~~~~~~~s~~~l~~l~~~ 298 (348)
||.|++.+++|-++.+....+|+.+.++|+|||.|++..++..++.+. | .+...-.++.+++.++..+
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~ 182 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAA 182 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHH
Confidence 999999999999999889999999999999999999998776655321 1 1112223788899999999
Q ss_pred cCCeEEEEeecCCC
Q 018970 299 CGLHIYKSKDQKGL 312 (348)
Q Consensus 299 aGf~~v~~~~~~~~ 312 (348)
+||+..+...++.+
T Consensus 183 ~GL~l~~~~~MPAN 196 (204)
T PF06080_consen 183 HGLELEEDIDMPAN 196 (204)
T ss_pred CCCccCcccccCCC
Confidence 99998887766543
No 93
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.43 E-value=1.4e-12 Score=116.36 Aligned_cols=101 Identities=19% Similarity=0.171 Sum_probs=81.5
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (348)
+.++.+|||||||+|+++..++.... .+|+++|+++.+++.+++++...++ .++++.++|......+.+.||
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------~~v~~~~gd~~~~~~~~~~fD 147 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------DNVEVIVGDGTLGYEENAPYD 147 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEECCcccCCCcCCCcC
Confidence 56788999999999999988876532 3799999999999999999876432 368999999877554557899
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+|++...+++++ +.+.+.|||||.|++..
T Consensus 148 ~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 148 RIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred EEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 999987766544 35677899999998864
No 94
>PRK14968 putative methyltransferase; Provisional
Probab=99.42 E-value=5.7e-12 Score=109.62 Aligned_cols=134 Identities=15% Similarity=0.118 Sum_probs=98.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
.++.+|||+|||+|.++..++..+ ..|+++|.|+.+++.+++++...++. ...+.+...|+.+... ..+||+|+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~~~~~-~~~~d~vi 95 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIR----NNGVEVIRSDLFEPFR-GDKFDVIL 95 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCC----CcceEEEecccccccc-ccCceEEE
Confidence 456789999999999999998774 46999999999999999887654331 1126777788766433 35899999
Q ss_pred echhhhcCC-------------------hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHH
Q 018970 236 VQWCIGHLT-------------------DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELF 296 (348)
Q Consensus 236 ~~~~l~~~~-------------------~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~ 296 (348)
++..+.+.. ...+..+++++.++|||||.+++..... ...+.+.+++
T Consensus 96 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~--------------~~~~~l~~~~ 161 (188)
T PRK14968 96 FNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL--------------TGEDEVLEYL 161 (188)
T ss_pred ECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc--------------CCHHHHHHHH
Confidence 876543311 1235678999999999999988764211 2346788999
Q ss_pred HhcCCeEEEEeec
Q 018970 297 SRCGLHIYKSKDQ 309 (348)
Q Consensus 297 ~~aGf~~v~~~~~ 309 (348)
.++||++......
T Consensus 162 ~~~g~~~~~~~~~ 174 (188)
T PRK14968 162 EKLGFEAEVVAEE 174 (188)
T ss_pred HHCCCeeeeeeec
Confidence 9999998775543
No 95
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.42 E-value=6.5e-13 Score=113.22 Aligned_cols=122 Identities=12% Similarity=0.047 Sum_probs=91.6
Q ss_pred EEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCc
Q 018970 184 DLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG 263 (348)
Q Consensus 184 ~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG 263 (348)
+|+|+|+.|++.|+++...... ....++++.++|+.++++++++||+|++..+++++. |...++++++++|||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~---~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR---SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc---cCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCe
Confidence 4899999999999876542110 002468999999999998888999999999999998 78899999999999999
Q ss_pred EEEEEecccCCCc--------e----------ecCCCCc---------eecCHHHHHHHHHhcCCeEEEEeecC
Q 018970 264 FFVLKENIARSGF--------V----------LDKEDRS---------ITRSDFYFKELFSRCGLHIYKSKDQK 310 (348)
Q Consensus 264 ~lii~~~~~~~~~--------~----------~d~~~~~---------~~~s~~~l~~l~~~aGf~~v~~~~~~ 310 (348)
.+++.+....... . ....... ...+.+++.++++++||+.+....+.
T Consensus 76 ~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~ 149 (160)
T PLN02232 76 RVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEIS 149 (160)
T ss_pred EEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECc
Confidence 9999875432211 0 0000011 11488899999999999988765543
No 96
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.42 E-value=1.8e-12 Score=115.76 Aligned_cols=101 Identities=18% Similarity=0.114 Sum_probs=81.5
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (348)
+.++.+|||||||+|.++..++..... .|+++|+++.+++.|++++...++ .++++...|+.+.....++||
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------~~v~~~~~d~~~~~~~~~~fD 148 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------DNVIVIVGDGTQGWEPLAPYD 148 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------CCeEEEECCcccCCcccCCCC
Confidence 567889999999999999988866433 599999999999999999876543 468899999877544446899
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+|++.....+++ +.+.+.|+|||+|++.-
T Consensus 149 ~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 149 RIYVTAAGPKIP--------EALIDQLKEGGILVMPV 177 (215)
T ss_pred EEEEcCCccccc--------HHHHHhcCcCcEEEEEE
Confidence 999887766544 45778899999999863
No 97
>PHA03411 putative methyltransferase; Provisional
Probab=99.41 E-value=5.2e-12 Score=115.01 Aligned_cols=129 Identities=18% Similarity=0.224 Sum_probs=97.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
...+|||+|||+|.++..++.+. ..+|+++|+|+.|++.+++++. ++++.+.|+.++... .+||+|+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----------~v~~v~~D~~e~~~~-~kFDlII 131 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----------EAEWITSDVFEFESN-EKFDVVI 131 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------CCEEEECchhhhccc-CCCcEEE
Confidence 45689999999999999887664 3479999999999999988742 478899999887643 6899999
Q ss_pred echhhhcCChhh------------------HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHH
Q 018970 236 VQWCIGHLTDDD------------------FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFS 297 (348)
Q Consensus 236 ~~~~l~~~~~~d------------------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~ 297 (348)
++..+++.+..+ +..+++....+|+|+|.+++.- ...+.+ .-..+.+++.++++
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y--ss~~~y------~~sl~~~~y~~~l~ 203 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY--SGRPYY------DGTMKSNKYLKWSK 203 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE--eccccc------cccCCHHHHHHHHH
Confidence 999999875432 2456777788999999776651 111110 11257889999999
Q ss_pred hcCCeEEE
Q 018970 298 RCGLHIYK 305 (348)
Q Consensus 298 ~aGf~~v~ 305 (348)
++||...-
T Consensus 204 ~~g~~~~~ 211 (279)
T PHA03411 204 QTGLVTYA 211 (279)
T ss_pred hcCcEecC
Confidence 99998643
No 98
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.40 E-value=9.9e-12 Score=115.63 Aligned_cols=128 Identities=17% Similarity=0.127 Sum_probs=95.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
++.+|||+|||+|.++..++..... .|+++|+|+.+++.|++++...++ ..++.+...|+.+.. +.++||+|+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~-----~~~i~~~~~D~~~~~-~~~~fD~Iv 194 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL-----EDRVTLIQSDLFAAL-PGRKYDLIV 194 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhhcc-CCCCccEEE
Confidence 4468999999999999999977653 799999999999999999876543 346889999985532 335899999
Q ss_pred echhhh------cCCh-----------------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHH
Q 018970 236 VQWCIG------HLTD-----------------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYF 292 (348)
Q Consensus 236 ~~~~l~------~~~~-----------------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l 292 (348)
++.... ++.. +....+++.+.++|+|||++++... .+.+.+
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g----------------~~~~~v 258 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG----------------NSMEAL 258 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC----------------cCHHHH
Confidence 973211 1110 1246789999999999999987542 123468
Q ss_pred HHHHHhcCCeEEEE
Q 018970 293 KELFSRCGLHIYKS 306 (348)
Q Consensus 293 ~~l~~~aGf~~v~~ 306 (348)
.+++..+||.....
T Consensus 259 ~~~~~~~~~~~~~~ 272 (284)
T TIGR03533 259 EEAYPDVPFTWLEF 272 (284)
T ss_pred HHHHHhCCCceeee
Confidence 88999999876543
No 99
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.39 E-value=2.8e-12 Score=121.89 Aligned_cols=128 Identities=13% Similarity=-0.032 Sum_probs=99.0
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
..++.+|||+|||+|.++...+..+. .++|+|+++.|++.++.++...++ .++.+.+.|+.+++..+++||+|
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~------~~i~~~~~D~~~l~~~~~~~D~I 252 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGI------EDFFVKRGDATKLPLSSESVDAI 252 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCC------CCCeEEecchhcCCcccCCCCEE
Confidence 56778999999999999988765554 599999999999999998876544 23788899999988766899999
Q ss_pred eechhhhcC-------ChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970 235 WVQWCIGHL-------TDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK 307 (348)
Q Consensus 235 i~~~~l~~~-------~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~ 307 (348)
+++..+..- ..+-...+++.+.++|||||++++.... ...+.++++++|| ++..-
T Consensus 253 v~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~-----------------~~~~~~~~~~~g~-i~~~~ 314 (329)
T TIGR01177 253 ATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT-----------------RIDLESLAEDAFR-VVKRF 314 (329)
T ss_pred EECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC-----------------CCCHHHHHhhcCc-chhee
Confidence 997554321 1122578999999999999999887532 1236678999999 66543
No 100
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.39 E-value=2.3e-12 Score=119.59 Aligned_cols=128 Identities=16% Similarity=0.251 Sum_probs=96.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
.++.+|||+|||+|.++...+..+...|+++|+++.+++.|++++..+++ ..++.+ ....+.. .++||+|+
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~-----~~~~~v--~~~~~~~--~~~~dlvv 230 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGV-----EDRIEV--SLSEDLV--EGKFDLVV 230 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT------TTCEEE--SCTSCTC--CS-EEEEE
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCC-----CeeEEE--EEecccc--cccCCEEE
Confidence 46679999999999999988877888999999999999999999876544 223333 2222222 37899999
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCCC
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGL 312 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~~ 312 (348)
+|-... -+..++..+.++|+|||+++++.... -..+.+.+.+++ ||++++...+..+
T Consensus 231 ANI~~~-----vL~~l~~~~~~~l~~~G~lIlSGIl~--------------~~~~~v~~a~~~-g~~~~~~~~~~~W 287 (295)
T PF06325_consen 231 ANILAD-----VLLELAPDIASLLKPGGYLILSGILE--------------EQEDEVIEAYKQ-GFELVEEREEGEW 287 (295)
T ss_dssp EES-HH-----HHHHHHHHCHHHEEEEEEEEEEEEEG--------------GGHHHHHHHHHT-TEEEEEEEEETTE
T ss_pred ECCCHH-----HHHHHHHHHHHhhCCCCEEEEccccH--------------HHHHHHHHHHHC-CCEEEEEEEECCE
Confidence 876655 46788899999999999999987432 234568888887 9999988776543
No 101
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.38 E-value=1.3e-11 Score=118.68 Aligned_cols=129 Identities=17% Similarity=0.176 Sum_probs=95.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-CCCceeEE
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~I 234 (348)
++.+|||+|||+|.++..++...+. .|+++|+|+.|++.|++++... ..++.+.++|+.+... ..++||+|
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~-------g~rV~fi~gDl~e~~l~~~~~FDLI 323 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL-------GARVEFAHGSWFDTDMPSEGKWDII 323 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-------CCcEEEEEcchhccccccCCCccEE
Confidence 4468999999999999998876543 7999999999999999998653 2368899999865432 23579999
Q ss_pred eechhhhcCC---------------------h--hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHH
Q 018970 235 WVQWCIGHLT---------------------D--DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFY 291 (348)
Q Consensus 235 i~~~~l~~~~---------------------~--~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~ 291 (348)
+++.....-. + +-+..+++.+.+.|+|||.+++.... ...+.
T Consensus 324 VSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~---------------~Q~e~ 388 (423)
T PRK14966 324 VSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF---------------DQGAA 388 (423)
T ss_pred EECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc---------------cHHHH
Confidence 9976532110 0 12446777888999999998764321 12456
Q ss_pred HHHHHHhcCCeEEEEe
Q 018970 292 FKELFSRCGLHIYKSK 307 (348)
Q Consensus 292 l~~l~~~aGf~~v~~~ 307 (348)
+.+++++.||..++..
T Consensus 389 V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 389 VRGVLAENGFSGVETL 404 (423)
T ss_pred HHHHHHHCCCcEEEEE
Confidence 8899999999877654
No 102
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.38 E-value=7.9e-13 Score=106.17 Aligned_cols=107 Identities=22% Similarity=0.261 Sum_probs=85.8
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCceeEEe
Q 018970 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW 235 (348)
Q Consensus 158 ~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~Ii 235 (348)
+.+|||+|||+|.++..++..+..+++++|+++..++.++.++...++ ..++++.+.|+.+.. .+.++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-----DDRVEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-----TTTEEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-----CceEEEEECchhhchhhccCceeEEEE
Confidence 358999999999999999988845799999999999999998876433 356899999998765 5568999999
Q ss_pred echhhhcCCh------hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 236 VQWCIGHLTD------DDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 236 ~~~~l~~~~~------~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
++..+..... .....+++++.++|+|||.+++..
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9888774321 235689999999999999998864
No 103
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.36 E-value=1.2e-11 Score=109.87 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=75.5
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-------
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (348)
..++.+|||||||+|.++..+++... ..|+++|+++ |. . ..++.++++|+.+..
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~--------~--------~~~v~~i~~D~~~~~~~~~i~~ 111 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD--------P--------IVGVDFLQGDFRDELVLKALLE 111 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc--------C--------CCCcEEEecCCCChHHHHHHHH
Confidence 35677999999999999999987753 2799999987 21 1 134789999998853
Q ss_pred -CCCCceeEEeechhhhcCChh--h-------HHHHHHHHHHcCCCCcEEEEEe
Q 018970 226 -PETGRYDVIWVQWCIGHLTDD--D-------FVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 226 -~~~~~fD~Ii~~~~l~~~~~~--d-------~~~~l~~~~~~LkpgG~lii~~ 269 (348)
...++||+|++..+.++.... | ...+++.+.++|||||.|++..
T Consensus 112 ~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 112 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred HhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 345789999998766654321 1 2468999999999999999975
No 104
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.36 E-value=3.5e-12 Score=110.67 Aligned_cols=164 Identities=18% Similarity=0.234 Sum_probs=102.5
Q ss_pred hhhhHHHh----hhhccccccccccccccCcccccccChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHH
Q 018970 101 KKTQWYRE----GISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLL 176 (348)
Q Consensus 101 ~~~~~y~~----~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la 176 (348)
-...+|.. +.+...+.+..|+.+..||...-..+...+-+.+...+.. .++...|.|+|||.+.++..+-
T Consensus 18 lNE~LYT~~s~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~------~~~~~viaD~GCGdA~la~~~~ 91 (219)
T PF05148_consen 18 LNEQLYTTSSEEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKK------RPKSLVIADFGCGDAKLAKAVP 91 (219)
T ss_dssp HHHHHHHS-HHHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCT------S-TTS-EEEES-TT-HHHHH--
T ss_pred HHHhHhcCCHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHh------cCCCEEEEECCCchHHHHHhcc
Confidence 34455542 3344555555666666666655555555555555555543 3456799999999999997653
Q ss_pred HhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHH
Q 018970 177 IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAK 256 (348)
Q Consensus 177 ~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~ 256 (348)
... .|...|.-+ .+-.+..+|+.+.|.+++++|++|++.+|+. + ++..+++++.
T Consensus 92 -~~~-~V~SfDLva---------------------~n~~Vtacdia~vPL~~~svDv~VfcLSLMG-T--n~~~fi~EA~ 145 (219)
T PF05148_consen 92 -NKH-KVHSFDLVA---------------------PNPRVTACDIANVPLEDESVDVAVFCLSLMG-T--NWPDFIREAN 145 (219)
T ss_dssp -S----EEEEESS----------------------SSTTEEES-TTS-S--TT-EEEEEEES---S-S---HHHHHHHHH
T ss_pred -cCc-eEEEeeccC---------------------CCCCEEEecCccCcCCCCceeEEEEEhhhhC-C--CcHHHHHHHH
Confidence 333 499999632 2345778999999999999999999998885 3 6889999999
Q ss_pred HcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970 257 VGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD 308 (348)
Q Consensus 257 ~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~ 308 (348)
|+|||||.|+|.|.... + -+.+.+.+.++..||++.....
T Consensus 146 RvLK~~G~L~IAEV~SR-----------f-~~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 146 RVLKPGGILKIAEVKSR-----------F-ENVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp HHEEEEEEEEEEEEGGG-------------S-HHHHHHHHHCTTEEEEEEE-
T ss_pred heeccCcEEEEEEeccc-----------C-cCHHHHHHHHHHCCCeEEeccc
Confidence 99999999999995432 1 1557799999999999888543
No 105
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.35 E-value=2.8e-11 Score=113.74 Aligned_cols=126 Identities=18% Similarity=0.154 Sum_probs=93.4
Q ss_pred CcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (348)
Q Consensus 159 ~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~ 237 (348)
.+|||+|||+|.++..++...+. .|+++|+|+.+++.|++++...++ ..++++.+.|+.+.. +.++||+|+++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l-----~~~i~~~~~D~~~~l-~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL-----EDRVTLIESDLFAAL-PGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----CCcEEEEECchhhhC-CCCCccEEEEC
Confidence 68999999999999999877653 799999999999999999876543 346899999986532 23589999997
Q ss_pred hhh-------------hcCCh----------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHH
Q 018970 238 WCI-------------GHLTD----------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKE 294 (348)
Q Consensus 238 ~~l-------------~~~~~----------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~ 294 (348)
... +|-+. +....+++.+.++|+|||.+++.... +...+.+
T Consensus 209 PPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~----------------~~~~~~~ 272 (307)
T PRK11805 209 PPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN----------------SRVHLEE 272 (307)
T ss_pred CCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc----------------CHHHHHH
Confidence 321 11110 12467899999999999999875321 2245778
Q ss_pred HHHhcCCeEEEE
Q 018970 295 LFSRCGLHIYKS 306 (348)
Q Consensus 295 l~~~aGf~~v~~ 306 (348)
++...||.....
T Consensus 273 ~~~~~~~~~~~~ 284 (307)
T PRK11805 273 AYPDVPFTWLEF 284 (307)
T ss_pred HHhhCCCEEEEe
Confidence 888888765443
No 106
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.34 E-value=4.9e-11 Score=110.31 Aligned_cols=130 Identities=23% Similarity=0.277 Sum_probs=96.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
.++.+|||+|||+|.++..++..... .|+++|+|+.+++.|++++.. .. ..++.+...|+.+... .++||+|
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~-~~-----~~~i~~~~~d~~~~~~-~~~fD~I 179 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH-GL-----GARVEFLQGDWFEPLP-GGRFDLI 179 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh-CC-----CCcEEEEEccccCcCC-CCceeEE
Confidence 45678999999999999999877643 799999999999999998761 11 3468899998855322 4689999
Q ss_pred eechhhhc------CC------------------hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHH
Q 018970 235 WVQWCIGH------LT------------------DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDF 290 (348)
Q Consensus 235 i~~~~l~~------~~------------------~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~ 290 (348)
+++..... +. -+.+..+++++.++|+|||.+++.... ...+
T Consensus 180 v~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~---------------~~~~ 244 (275)
T PRK09328 180 VSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY---------------DQGE 244 (275)
T ss_pred EECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---------------hHHH
Confidence 98643321 10 023467889999999999999884311 1235
Q ss_pred HHHHHHHhcCCeEEEEe
Q 018970 291 YFKELFSRCGLHIYKSK 307 (348)
Q Consensus 291 ~l~~l~~~aGf~~v~~~ 307 (348)
.+.+++++.||..+...
T Consensus 245 ~~~~~l~~~gf~~v~~~ 261 (275)
T PRK09328 245 AVRALLAAAGFADVETR 261 (275)
T ss_pred HHHHHHHhCCCceeEEe
Confidence 68899999999866653
No 107
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.33 E-value=1.3e-11 Score=110.08 Aligned_cols=101 Identities=18% Similarity=0.086 Sum_probs=79.9
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
..++.+|||+|||+|.++..++... ..|+++|+++.+++.+++++...++ .++++...|..+.....++||+|
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD~I 148 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGL------HNVSVRHGDGWKGWPAYAPFDRI 148 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCC------CceEEEECCcccCCCcCCCcCEE
Confidence 5677899999999999998776554 4699999999999999998876543 35888888876533334789999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~ 270 (348)
++...+++++ +.+.+.|+|||.+++...
T Consensus 149 ~~~~~~~~~~--------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 149 LVTAAAPEIP--------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEccCchhhh--------HHHHHhcCCCcEEEEEEc
Confidence 9987766543 457789999999998753
No 108
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.33 E-value=4.5e-12 Score=111.60 Aligned_cols=118 Identities=17% Similarity=0.260 Sum_probs=81.7
Q ss_pred hhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcce
Q 018970 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (348)
Q Consensus 135 ~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i 214 (348)
..+...++..+... -.....++|+|||+|..++-++ ..+.+|+++|+|+.||+.|++..+..-. ....
T Consensus 17 P~YPtdw~~~ia~~------~~~h~~a~DvG~G~Gqa~~~ia-e~~k~VIatD~s~~mL~~a~k~~~~~y~-----~t~~ 84 (261)
T KOG3010|consen 17 PSYPTDWFKKIASR------TEGHRLAWDVGTGNGQAARGIA-EHYKEVIATDVSEAMLKVAKKHPPVTYC-----HTPS 84 (261)
T ss_pred CCCcHHHHHHHHhh------CCCcceEEEeccCCCcchHHHH-HhhhhheeecCCHHHHHHhhcCCCcccc-----cCCc
Confidence 33445566665542 1222379999999996666555 5677899999999999999886543211 1122
Q ss_pred eEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCc-EEEE
Q 018970 215 NFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG-FFVL 267 (348)
Q Consensus 215 ~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG-~lii 267 (348)
.+...++.++.-.+++.|+|++..++|.+. +..+++.++|+||+.| .+.+
T Consensus 85 ~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd---le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 85 TMSSDEMVDLLGGEESVDLITAAQAVHWFD---LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred cccccccccccCCCcceeeehhhhhHHhhc---hHHHHHHHHHHcCCCCCEEEE
Confidence 333334444443468999999999999876 7899999999998876 4444
No 109
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.33 E-value=5.4e-11 Score=110.78 Aligned_cols=128 Identities=22% Similarity=0.192 Sum_probs=94.2
Q ss_pred CcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (348)
Q Consensus 159 ~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~ 237 (348)
.+|||+|||+|.++..++..... .|+++|+|+.+++.|++++...++ ..++.+..+|+.+.. +..+||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~-----~~~v~~~~~d~~~~~-~~~~fDlIvsN 189 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL-----EHRVEFIQSNLFEPL-AGQKIDIIVSN 189 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhccC-cCCCccEEEEC
Confidence 68999999999999999977653 799999999999999998875433 235889999886632 22479999986
Q ss_pred h-------------hhhcCCh----------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHH
Q 018970 238 W-------------CIGHLTD----------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKE 294 (348)
Q Consensus 238 ~-------------~l~~~~~----------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~ 294 (348)
. ++.|-+. +.+..+++.+.++|+|||++++..... ..+.+.+
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~---------------q~~~~~~ 254 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW---------------QQKSLKE 254 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc---------------HHHHHHH
Confidence 3 2222221 146678999999999999988764321 1335777
Q ss_pred HHH-hcCCeEEEEe
Q 018970 295 LFS-RCGLHIYKSK 307 (348)
Q Consensus 295 l~~-~aGf~~v~~~ 307 (348)
++. ..||..++..
T Consensus 255 ~~~~~~~~~~~~~~ 268 (284)
T TIGR00536 255 LLRIKFTWYDVENG 268 (284)
T ss_pred HHHhcCCCceeEEe
Confidence 777 4688765543
No 110
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.33 E-value=4.6e-11 Score=112.95 Aligned_cols=135 Identities=18% Similarity=0.287 Sum_probs=89.5
Q ss_pred hhhhHHHHHHHHhhhcCCcc--CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCC----CCCCCc
Q 018970 135 IKGSEAFLQMLLSDRFPNAR--NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP----ENHMAP 208 (348)
Q Consensus 135 ~~~~~~~l~~~l~~~l~~~~--~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~----~~~~~~ 208 (348)
+.....+++..+........ ..++.+|||+|||-|..+..........++|+|+|...|+.|+++... ..-...
T Consensus 38 lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~ 117 (331)
T PF03291_consen 38 LRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQY 117 (331)
T ss_dssp HHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTS
T ss_pred HHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccc
Confidence 34445666666654432111 127789999999999888777777888999999999999999998721 000000
Q ss_pred CCCcceeEEEcCCCCC------CCCCCceeEEeechhhhcCC--hhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 209 DMHKATNFFCVPLQDF------TPETGRYDVIWVQWCIGHLT--DDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 209 ~~~~~i~~~~~d~~~~------~~~~~~fD~Ii~~~~l~~~~--~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
...-...|+.+|...- ......||+|-|..++||.= .+....+|+++.+.|+|||+||.+.
T Consensus 118 ~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 118 RFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp EECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1123466777776542 22225999999999999873 3456779999999999999999864
No 111
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.33 E-value=8.9e-11 Score=100.42 Aligned_cols=143 Identities=17% Similarity=0.131 Sum_probs=109.7
Q ss_pred HHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEE
Q 018970 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (348)
Q Consensus 139 ~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~ 217 (348)
.+-+.-+.-..|. +.++.+++|||||+|.++..++..++. +|+++|-++++++..+++..+.++ .|+.+.
T Consensus 19 K~EIRal~ls~L~---~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~------~n~~vv 89 (187)
T COG2242 19 KEEIRALTLSKLR---PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV------DNLEVV 89 (187)
T ss_pred HHHHHHHHHHhhC---CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC------CcEEEE
Confidence 3444444444444 789999999999999999999955555 899999999999999999887653 678899
Q ss_pred EcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHH
Q 018970 218 CVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFS 297 (348)
Q Consensus 218 ~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~ 297 (348)
.+++-+.-....++|.|++... . .+..+++.+...|||||.+++..... -+.....+.++
T Consensus 90 ~g~Ap~~L~~~~~~daiFIGGg-~-----~i~~ile~~~~~l~~ggrlV~naitl--------------E~~~~a~~~~~ 149 (187)
T COG2242 90 EGDAPEALPDLPSPDAIFIGGG-G-----NIEEILEAAWERLKPGGRLVANAITL--------------ETLAKALEALE 149 (187)
T ss_pred eccchHhhcCCCCCCEEEECCC-C-----CHHHHHHHHHHHcCcCCeEEEEeecH--------------HHHHHHHHHHH
Confidence 9988765333237999999888 4 46689999999999999999865332 13345678899
Q ss_pred hcCC-eEEEEeecC
Q 018970 298 RCGL-HIYKSKDQK 310 (348)
Q Consensus 298 ~aGf-~~v~~~~~~ 310 (348)
+.|+ +++......
T Consensus 150 ~~g~~ei~~v~is~ 163 (187)
T COG2242 150 QLGGREIVQVQISR 163 (187)
T ss_pred HcCCceEEEEEeec
Confidence 9999 777655443
No 112
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.32 E-value=4.2e-11 Score=105.42 Aligned_cols=104 Identities=16% Similarity=0.122 Sum_probs=78.6
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CCCCCCcee
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYD 232 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD 232 (348)
..++.+|||+|||+|.++..++.... ..|+++|+|+.|++.+++++...++ .++++...|+.+ +......+|
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~d 111 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV------KNVEVIEGSAPECLAQLAPAPD 111 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CCeEEEECchHHHHhhCCCCCC
Confidence 56778999999999999998876543 3799999999999999998865432 357888888754 221113457
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~ 270 (348)
.|++.. . .++..+++++.++|+|||.+++...
T Consensus 112 ~v~~~~----~--~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 112 RVCIEG----G--RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred EEEEEC----C--cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 765432 1 2567899999999999999998863
No 113
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.28 E-value=3.8e-11 Score=92.36 Aligned_cols=102 Identities=26% Similarity=0.337 Sum_probs=82.7
Q ss_pred cEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-CCCceeEEeech
Q 018970 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIWVQW 238 (348)
Q Consensus 160 ~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~Ii~~~ 238 (348)
+|||+|||.|.++..++......++++|+++.+++.+++...... ..++.+...|+.+... ..++||+|++..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------ADNVEVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc------ccceEEEEcChhhhccccCCceEEEEEcc
Confidence 589999999999998886344489999999999999985332211 3568888888888663 447899999999
Q ss_pred hhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
+++++ .+....+++.+.+.|+|||.+++.
T Consensus 75 ~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 99884 337889999999999999999876
No 114
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.27 E-value=2.7e-11 Score=115.91 Aligned_cols=107 Identities=18% Similarity=0.136 Sum_probs=85.0
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC--CCCCCceeE
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRYDV 233 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~ 233 (348)
.+..+||||||+|.++..++...+. .++|+|+++.|++.|.+++...++ .++.+..+|+..+ ..+++++|.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL------~NV~~i~~DA~~ll~~~~~~s~D~ 195 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL------KNLLIINYDARLLLELLPSNSVEK 195 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHhhhhCCCCceeE
Confidence 4458999999999999999988765 899999999999999988866543 4688999998654 245689999
Q ss_pred EeechhhhcCChhh----HHHHHHHHHHcCCCCcEEEEEe
Q 018970 234 IWVQWCIGHLTDDD----FVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 234 Ii~~~~l~~~~~~d----~~~~l~~~~~~LkpgG~lii~~ 269 (348)
|+++....+..... ...+++.+.++|+|||.+.+..
T Consensus 196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred EEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 99865433221111 2589999999999999999964
No 115
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.26 E-value=6.6e-11 Score=118.38 Aligned_cols=131 Identities=18% Similarity=0.187 Sum_probs=95.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
++.+|||+|||+|.++..++...+. .|+++|+|+.+++.|++++...++ ..++.+..+|+.+.. +.++||+|+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l-----~~~v~~~~~D~~~~~-~~~~fDlIv 211 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV-----TDRIQIIHSNWFENI-EKQKFDFIV 211 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-----ccceeeeecchhhhC-cCCCccEEE
Confidence 3468999999999999998876543 799999999999999999865433 346888888875432 235899999
Q ss_pred echhhh--------------cCC------h----hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHH
Q 018970 236 VQWCIG--------------HLT------D----DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFY 291 (348)
Q Consensus 236 ~~~~l~--------------~~~------~----~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~ 291 (348)
++.... |-+ . +.+..+++.+.++|+|||.+++.... ...+.
T Consensus 212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~---------------~q~~~ 276 (506)
T PRK01544 212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF---------------KQEEA 276 (506)
T ss_pred ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC---------------chHHH
Confidence 864321 111 0 12456788899999999999874321 13456
Q ss_pred HHHHHHhcCCeEEEEee
Q 018970 292 FKELFSRCGLHIYKSKD 308 (348)
Q Consensus 292 l~~l~~~aGf~~v~~~~ 308 (348)
+.+++.+.||..+....
T Consensus 277 v~~~~~~~g~~~~~~~~ 293 (506)
T PRK01544 277 VTQIFLDHGYNIESVYK 293 (506)
T ss_pred HHHHHHhcCCCceEEEe
Confidence 88899999998776543
No 116
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.26 E-value=7.1e-11 Score=107.29 Aligned_cols=102 Identities=23% Similarity=0.342 Sum_probs=86.1
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
..+..+|||||+|.|.++..++.+++. +++.+|. |..++.+++ . .++++..+|+. -+.+ . +|+
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--~----------~rv~~~~gd~f-~~~P-~-~D~ 161 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--A----------DRVEFVPGDFF-DPLP-V-ADV 161 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--T----------TTEEEEES-TT-TCCS-S-ESE
T ss_pred ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--c----------cccccccccHH-hhhc-c-ccc
Confidence 455578999999999999999999887 8999997 888988887 1 46999999998 3444 4 999
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCC--cEEEEEeccc
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPG--GFFVLKENIA 272 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~Lkpg--G~lii~~~~~ 272 (348)
|++.++||++++++...+|+++++.|+|| |.|+|.|.+.
T Consensus 162 ~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 162 YLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp EEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred eeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 99999999999999999999999999999 9999998664
No 117
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.23 E-value=1.6e-10 Score=105.59 Aligned_cols=126 Identities=23% Similarity=0.219 Sum_probs=92.5
Q ss_pred CCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--CCCceeEE
Q 018970 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDVI 234 (348)
Q Consensus 158 ~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~fD~I 234 (348)
+.+|||+|||+|.++..++..... .|+++|+|+.+++.|++++... +.++.+.|+.+... ..++||+|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~---------~~~~~~~D~~~~l~~~~~~~fDlV 157 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA---------GGTVHEGDLYDALPTALRGRVDIL 157 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---------CCEEEEeechhhcchhcCCCEeEE
Confidence 458999999999999999876543 7999999999999999998652 14678888765321 12579999
Q ss_pred eechhhh------cCCh------------------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHH
Q 018970 235 WVQWCIG------HLTD------------------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDF 290 (348)
Q Consensus 235 i~~~~l~------~~~~------------------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~ 290 (348)
+++.... .+++ +-+..+++.+.++|+|||.+++.... ....
T Consensus 158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~---------------~~~~ 222 (251)
T TIGR03704 158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE---------------RQAP 222 (251)
T ss_pred EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc---------------chHH
Confidence 9976432 1111 01457888888999999999987421 1234
Q ss_pred HHHHHHHhcCCeEEEEe
Q 018970 291 YFKELFSRCGLHIYKSK 307 (348)
Q Consensus 291 ~l~~l~~~aGf~~v~~~ 307 (348)
.+.+++++.||+.....
T Consensus 223 ~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 223 LAVEAFARAGLIARVAS 239 (251)
T ss_pred HHHHHHHHCCCCceeeE
Confidence 68889999999866544
No 118
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.1e-10 Score=101.98 Aligned_cols=101 Identities=23% Similarity=0.218 Sum_probs=85.2
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
+.++.+|||||||+|+.+.-|+ +...+|+.+|..+...+.|++++...|+ .|+.+.++|...--.+.+.||.|
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla-~l~~~V~siEr~~~L~~~A~~~L~~lg~------~nV~v~~gDG~~G~~~~aPyD~I 142 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLA-RLVGRVVSIERIEELAEQARRNLETLGY------ENVTVRHGDGSKGWPEEAPYDRI 142 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHH-HHhCeEEEEEEcHHHHHHHHHHHHHcCC------CceEEEECCcccCCCCCCCcCEE
Confidence 7888999999999999999776 4444799999999999999999988765 45899999987643444899999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~ 270 (348)
+.......+| +.+.+.|||||.+++-..
T Consensus 143 ~Vtaaa~~vP--------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 143 IVTAAAPEVP--------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEeeccCCCC--------HHHHHhcccCCEEEEEEc
Confidence 9999988888 356778999999999764
No 119
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.21 E-value=5.8e-11 Score=105.34 Aligned_cols=154 Identities=18% Similarity=0.234 Sum_probs=109.3
Q ss_pred hhccccccccccccccCcccccccChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCC
Q 018970 110 ISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPV 189 (348)
Q Consensus 110 ~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S 189 (348)
.+.+...+..|+.+..||......+....-+.+.+.+.. ......|.|+|||.+.++. .....|+.+|.-
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~------r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~ 208 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKR------RPKNIVIADFGCGEAKIAS----SERHKVHSFDLV 208 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHh------CcCceEEEecccchhhhhh----ccccceeeeeee
Confidence 344445555566555565443333444444455555543 2455689999999998776 333358888852
Q ss_pred HHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 190 SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 190 ~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
..+-++..+|+.+.|.++++.|+++++.+|+. + ++..++++++|+|+|||.++|.+
T Consensus 209 ---------------------a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-t--n~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 209 ---------------------AVNERVIACDMRNVPLEDESVDVAVFCLSLMG-T--NLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred ---------------------cCCCceeeccccCCcCccCcccEEEeeHhhhc-c--cHHHHHHHHHHHhccCceEEEEe
Confidence 23566788999999999999999999888774 3 68999999999999999999998
Q ss_pred cccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970 270 NIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQ 309 (348)
Q Consensus 270 ~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~ 309 (348)
.-.. | -+...+.+.+...||.+......
T Consensus 265 v~SR--f----------~dv~~f~r~l~~lGF~~~~~d~~ 292 (325)
T KOG3045|consen 265 VKSR--F----------SDVKGFVRALTKLGFDVKHKDVS 292 (325)
T ss_pred hhhh--c----------ccHHHHHHHHHHcCCeeeehhhh
Confidence 5432 1 23455889999999998876543
No 120
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.21 E-value=9.9e-11 Score=102.36 Aligned_cols=98 Identities=21% Similarity=0.152 Sum_probs=72.5
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-------
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (348)
+.++.+|||+|||+|.++..++..... .|+++|+|+.+ . ..++.+.+.|+.+..
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~-----------~~~i~~~~~d~~~~~~~~~l~~ 92 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P-----------IENVDFIRGDFTDEEVLNKIRE 92 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c-----------CCCceEEEeeCCChhHHHHHHH
Confidence 567789999999999999988876533 69999999864 1 134678888876642
Q ss_pred -CCCCceeEEeechhh--------hcCCh-hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 226 -PETGRYDVIWVQWCI--------GHLTD-DDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 226 -~~~~~fD~Ii~~~~l--------~~~~~-~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
.+.++||+|++..+. +|... ++...+++.+.++|+|||.+++..
T Consensus 93 ~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 93 RVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 234679999986432 22211 234689999999999999999863
No 121
>PRK00811 spermidine synthase; Provisional
Probab=99.21 E-value=4.8e-11 Score=110.96 Aligned_cols=112 Identities=20% Similarity=0.200 Sum_probs=82.6
Q ss_pred CCCCcEEEEeccccHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeE
Q 018970 156 NQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~ 233 (348)
+.+.+||+||||+|.++..+++. ...+|+++|+++.+++.|++.+....... -...+++++..|...+. ...++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~-~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGA-YDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccc-ccCCceEEEECchHHHHhhCCCcccE
Confidence 45679999999999999999865 34589999999999999999875321100 01357889999987643 23478999
Q ss_pred EeechhhhcCChhh--HHHHHHHHHHcCCCCcEEEEE
Q 018970 234 IWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 234 Ii~~~~l~~~~~~d--~~~~l~~~~~~LkpgG~lii~ 268 (348)
|++...-.+.+... ...+++.+.+.|+|||++++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99854333222212 267899999999999998874
No 122
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=3.7e-10 Score=104.65 Aligned_cols=126 Identities=24% Similarity=0.251 Sum_probs=92.9
Q ss_pred cEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeech
Q 018970 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (348)
Q Consensus 160 ~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~ 238 (348)
+|||+|||+|.++..++.+.+. +|+++|+|+.+++.|++++...++ .++.+...|+.+-. .++||+|++|.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l------~~~~~~~~dlf~~~--~~~fDlIVsNP 184 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL------VRVLVVQSDLFEPL--RGKFDLIVSNP 184 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC------ccEEEEeeeccccc--CCceeEEEeCC
Confidence 7999999999999999988875 899999999999999999987543 23444444654422 25899999975
Q ss_pred hhhcCC---------------------h--hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHH
Q 018970 239 CIGHLT---------------------D--DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKEL 295 (348)
Q Consensus 239 ~l~~~~---------------------~--~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l 295 (348)
..---. + +-...++..+.+.|+|||.+++..... ..+.+.++
T Consensus 185 PYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~---------------q~~~v~~~ 249 (280)
T COG2890 185 PYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLT---------------QGEAVKAL 249 (280)
T ss_pred CCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCC---------------cHHHHHHH
Confidence 422111 0 124678888999999999988875322 25678999
Q ss_pred HHhcC-CeEEEEee
Q 018970 296 FSRCG-LHIYKSKD 308 (348)
Q Consensus 296 ~~~aG-f~~v~~~~ 308 (348)
|.+.| |..+....
T Consensus 250 ~~~~~~~~~v~~~~ 263 (280)
T COG2890 250 FEDTGFFEIVETLK 263 (280)
T ss_pred HHhcCCceEEEEEe
Confidence 99999 56555443
No 123
>PRK04457 spermidine synthase; Provisional
Probab=99.19 E-value=1.3e-10 Score=106.86 Aligned_cols=107 Identities=18% Similarity=0.212 Sum_probs=81.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeE
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~ 233 (348)
.++.+|||||||+|.++..++...+. +++++|+++.+++.|++.+...+. ..+++++.+|+.++- ...++||+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~-----~~rv~v~~~Da~~~l~~~~~~yD~ 139 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN-----GERFEVIEADGAEYIAVHRHSTDV 139 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC-----CCceEEEECCHHHHHHhCCCCCCE
Confidence 45678999999999999999877654 799999999999999998764211 357899999986542 22368999
Q ss_pred Eeechhhh--cCCh-hhHHHHHHHHHHcCCCCcEEEEE
Q 018970 234 IWVQWCIG--HLTD-DDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 234 Ii~~~~l~--~~~~-~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
|++.. ++ ..+. -....+++.+.+.|+|||++++-
T Consensus 140 I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 140 ILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred EEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 99752 21 1111 11368999999999999999884
No 124
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.18 E-value=1.5e-10 Score=109.09 Aligned_cols=101 Identities=20% Similarity=0.190 Sum_probs=79.2
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (348)
+.++.+|||+|||+|.++..++..... .|+++|+++.+++.|++++...+. .++.+..+|..+.....++||
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------~nV~~i~gD~~~~~~~~~~fD 151 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------ENVIFVCGDGYYGVPEFAPYD 151 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCChhhcccccCCcc
Confidence 566789999999999999998866432 599999999999999998765432 357888888776554446899
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+|++...+.+++ ..+.+.|+|||.+++..
T Consensus 152 ~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 152 VIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred EEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 999986666543 34667899999988853
No 125
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.18 E-value=2.1e-10 Score=100.99 Aligned_cols=168 Identities=17% Similarity=0.202 Sum_probs=105.4
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCC----CCCC----------------------
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE----NHMA---------------------- 207 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~----~~~~---------------------- 207 (348)
...+.-+|||||..|.++..+++.+.. .|.|+||++..|..|++.+..- .-..
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 345678999999999999999977544 8999999999999999876421 0000
Q ss_pred ---cCC-------CcceeEEEcCCCCCCCCCCceeEEeechhh--hcCC--hhhHHHHHHHHHHcCCCCcEEEEEecccC
Q 018970 208 ---PDM-------HKATNFFCVPLQDFTPETGRYDVIWVQWCI--GHLT--DDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (348)
Q Consensus 208 ---~~~-------~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l--~~~~--~~d~~~~l~~~~~~LkpgG~lii~~~~~~ 273 (348)
..+ ..|..+...|+.++ ....||+|+|..+- -|+. |+-+..+++++.++|.|||+|++-.-..
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~--~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpW- 212 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDM--IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPW- 212 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhh--ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCch-
Confidence 000 01222222233322 23579999874322 2444 4568999999999999999999853211
Q ss_pred CCc--------eecCCCCceecCHHHHHHHHHhc--CCeEEEEee-cCCCCccceEEEEEEEe
Q 018970 274 SGF--------VLDKEDRSITRSDFYFKELFSRC--GLHIYKSKD-QKGLPEELFAVKMYALT 325 (348)
Q Consensus 274 ~~~--------~~d~~~~~~~~s~~~l~~l~~~a--Gf~~v~~~~-~~~~~~~l~~v~~~~l~ 325 (348)
..+ ........+...++.+..++.+. ||+-++... ........+.-.+|..+
T Consensus 213 ksY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~~~~~~~skgf~R~i~~y~ 275 (288)
T KOG2899|consen 213 KSYKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLGLIVSAASKGFDRPILLYR 275 (288)
T ss_pred HHHHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeeccccccccccCccccceeeeee
Confidence 111 11222333446888899999886 666555443 22333445555666655
No 126
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.17 E-value=1.3e-10 Score=100.92 Aligned_cols=101 Identities=19% Similarity=0.176 Sum_probs=78.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CCCCCCceeEEe
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYDVIW 235 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~Ii 235 (348)
.+.-|||||||+|..+..|.+.+. .++|+|+|+.|++.|.+.-- ..++..+|+-+ +|+.+++||.+|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~-----------egdlil~DMG~GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVEREL-----------EGDLILCDMGEGLPFRPGTFDGVI 117 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhh-----------hcCeeeeecCCCCCCCCCccceEE
Confidence 467899999999999998887775 59999999999999986321 14466666654 788889999999
Q ss_pred echhhhcC---------ChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 236 VQWCIGHL---------TDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 236 ~~~~l~~~---------~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+..++..+ +...+..|+..++.+|++|+..++.-
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 76554432 33446779999999999999988863
No 127
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.17 E-value=1.9e-10 Score=98.91 Aligned_cols=103 Identities=14% Similarity=0.116 Sum_probs=78.3
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
+.++.+|||+|||+|.++..++++. ..|+++|+++.|++.+++++.. ..++++...|+.+++.+...||.|
T Consensus 11 ~~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~--------~~~v~ii~~D~~~~~~~~~~~d~v 81 (169)
T smart00650 11 LRPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA--------ADNLTVIHGDALKFDLPKLQPYKV 81 (169)
T ss_pred CCCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc--------CCCEEEEECchhcCCccccCCCEE
Confidence 4566799999999999999999874 4699999999999999998754 246889999999988765679999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+++..++ +..+.+..+++.. .+.++|.+++..
T Consensus 82 i~n~Py~-~~~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 82 VGNLPYN-ISTPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred EECCCcc-cHHHHHHHHHhcC--CCcceEEEEEEH
Confidence 9987665 3323344444321 244778877753
No 128
>PHA03412 putative methyltransferase; Provisional
Probab=99.16 E-value=4e-10 Score=100.54 Aligned_cols=131 Identities=13% Similarity=0.173 Sum_probs=90.7
Q ss_pred CCcEEEEeccccHHHHHHHHhC----CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 158 HLVALDCGSGIGRITKNLLIRY----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 158 ~~~VLDvGcG~G~~~~~la~~~----~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
+.+|||+|||+|.++..++.+. ..+|+++|+++.+++.|+++.. ++.+...|+..... +++||+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----------~~~~~~~D~~~~~~-~~~FDl 117 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----------EATWINADALTTEF-DTLFDM 117 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----------CCEEEEcchhcccc-cCCccE
Confidence 5699999999999999888652 2279999999999999998753 37788899877654 368999
Q ss_pred EeechhhhcCChhh----------HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCce----ecCHHHHHHHHHhc
Q 018970 234 IWVQWCIGHLTDDD----------FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSI----TRSDFYFKELFSRC 299 (348)
Q Consensus 234 Ii~~~~l~~~~~~d----------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~----~~s~~~l~~l~~~a 299 (348)
||++..+.-....+ ...+++++.+++++|+. ++-.+...-.+. ....+ .-+...+.+..++.
T Consensus 118 IIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~~~~~~~y~---~~~~~~~~~~~~~~~~~~~~~~~ 193 (241)
T PHA03412 118 AISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIPQMSANFRYS---GTHYFRQDESTTSSKCKKFLDET 193 (241)
T ss_pred EEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeCcccccCccc---CccceeeccCcccHHHHHHHHhc
Confidence 99998877443211 45688999996666664 554443332221 01111 02334577888888
Q ss_pred CCeEE
Q 018970 300 GLHIY 304 (348)
Q Consensus 300 Gf~~v 304 (348)
|+...
T Consensus 194 ~~~~~ 198 (241)
T PHA03412 194 GLEMN 198 (241)
T ss_pred Ceeec
Confidence 87643
No 129
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.13 E-value=1.1e-10 Score=103.58 Aligned_cols=102 Identities=22% Similarity=0.151 Sum_probs=76.7
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCC-C-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (348)
++++.+|||||||+|+.+.-++.... . .|+++|..+..++.|++++...++ .++.+.++|...--...+.||
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------~nv~~~~gdg~~g~~~~apfD 143 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------DNVEVVVGDGSEGWPEEAPFD 143 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------HSEEEEES-GGGTTGGG-SEE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------CceeEEEcchhhccccCCCcC
Confidence 78899999999999999997775532 2 599999999999999999876443 478999998765434457899
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~ 270 (348)
.|++......++ ..+.+.|++||++++.-.
T Consensus 144 ~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 144 RIIVTAAVPEIP--------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEESSBBSS----------HHHHHTEEEEEEEEEEES
T ss_pred EEEEeeccchHH--------HHHHHhcCCCcEEEEEEc
Confidence 999998877655 347777999999999653
No 130
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.13 E-value=2.4e-10 Score=118.71 Aligned_cols=133 Identities=15% Similarity=0.134 Sum_probs=98.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeEEe
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~Ii 235 (348)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++...++. ..++++.++|+.++. ...++||+|+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~----~~~v~~i~~D~~~~l~~~~~~fDlIi 613 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS----GRQHRLIQADCLAWLKEAREQFDLIF 613 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----ccceEEEEccHHHHHHHcCCCcCEEE
Confidence 35799999999999999999777768999999999999999998765441 136899999986642 1136899999
Q ss_pred echhhh-------cCC--hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970 236 VQWCIG-------HLT--DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKS 306 (348)
Q Consensus 236 ~~~~l~-------~~~--~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~ 306 (348)
+..... ... ..+...++..+.++|+|||.+++..+... .+. ..+++.++|+.+...
T Consensus 614 lDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~-------------~~~--~~~~~~~~g~~~~~i 678 (702)
T PRK11783 614 IDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRG-------------FKM--DEEGLAKLGLKAEEI 678 (702)
T ss_pred ECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-------------CCh--hHHHHHhCCCeEEEE
Confidence 864321 000 13567889999999999999988754321 111 267888899997776
Q ss_pred ee
Q 018970 307 KD 308 (348)
Q Consensus 307 ~~ 308 (348)
..
T Consensus 679 ~~ 680 (702)
T PRK11783 679 TA 680 (702)
T ss_pred ec
Confidence 54
No 131
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.13 E-value=3.3e-10 Score=102.51 Aligned_cols=114 Identities=15% Similarity=0.170 Sum_probs=86.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------CC
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE 227 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~ 227 (348)
.++.+|||+|||+|..+..++.... ..|+++|+++++++.|++++...++ ..++++..+|+.+.- .+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-----~~~i~~~~gda~~~L~~l~~~~~ 141 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-----DHKINFIQSDALSALDQLLNNDP 141 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEccHHHHHHHHHhCCC
Confidence 4567999999999999888876533 2799999999999999999987655 456899999887641 11
Q ss_pred CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC
Q 018970 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK 280 (348)
Q Consensus 228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~ 280 (348)
.++||+|++... .+.+..++..+.+.|+|||.+++ ++....+.+.+.
T Consensus 142 ~~~fD~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~-dn~l~~G~v~~~ 188 (234)
T PLN02781 142 KPEFDFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAF-DNTLWFGFVAQE 188 (234)
T ss_pred CCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEE-EcCCcCCeecCc
Confidence 368999987432 23567889999999999998666 444444554444
No 132
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.13 E-value=2.2e-10 Score=100.47 Aligned_cols=114 Identities=22% Similarity=0.359 Sum_probs=74.0
Q ss_pred CCCCcEEEEeccccH----HHHHHHHh---CCC---cEEEEcCCHHHHHHHHHH------------------h-CCCC--
Q 018970 156 NQHLVALDCGSGIGR----ITKNLLIR---YFN---EVDLLEPVSHFLDAARES------------------L-APEN-- 204 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~----~~~~la~~---~~~---~v~~vD~S~~~l~~a~~~------------------~-~~~~-- 204 (348)
.+..+|+..||++|. ++..+.+. ... ++.|+|+|+.+++.|++- + ...+
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 466899999999995 33333331 122 799999999999999872 1 0000
Q ss_pred C-CCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 205 H-MAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 205 ~-~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+ .......++.|...|+.+.....+.||+|+|.+++.+++.+....+++++++.|+|||+|++..
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 0 1112236799999999984444589999999999999999888999999999999999999964
No 133
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.10 E-value=6.9e-10 Score=109.37 Aligned_cols=133 Identities=15% Similarity=0.176 Sum_probs=96.6
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCC
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PET 228 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~ 228 (348)
+.++.+|||+|||+|..+..++.... ..|+++|+++.+++.+++++...|+ .++.+.+.|+.+++ ...
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 323 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------KSIKILAADSRNLLELKPQWR 323 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------CeEEEEeCChhhccccccccc
Confidence 56778999999999999999987642 2799999999999999999877654 35888999988765 234
Q ss_pred CceeEEeec------hhhhcCCh-------hh-------HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecC
Q 018970 229 GRYDVIWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRS 288 (348)
Q Consensus 229 ~~fD~Ii~~------~~l~~~~~-------~d-------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s 288 (348)
++||.|++. .++++-++ ++ ...++.++.++|||||.|+.++-..... -.
T Consensus 324 ~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~-----------En 392 (434)
T PRK14901 324 GYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPA-----------EN 392 (434)
T ss_pred ccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-----------hH
Confidence 689999963 34444332 11 3678999999999999998875221100 12
Q ss_pred HHHHHHHHHhc-CCeEE
Q 018970 289 DFYFKELFSRC-GLHIY 304 (348)
Q Consensus 289 ~~~l~~l~~~a-Gf~~v 304 (348)
...+...+++. +|++.
T Consensus 393 e~~v~~~l~~~~~~~~~ 409 (434)
T PRK14901 393 EAQIEQFLARHPDWKLE 409 (434)
T ss_pred HHHHHHHHHhCCCcEec
Confidence 34466667665 57754
No 134
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.09 E-value=1.1e-09 Score=107.85 Aligned_cols=133 Identities=17% Similarity=0.126 Sum_probs=94.4
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCce
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~f 231 (348)
+.++.+|||+|||+|..+..++.... ..|+++|+|+.+++.+++++...|+ .+.+.+.|+.++. ...++|
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-------~~~~~~~D~~~~~~~~~~~~f 314 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-------KATVIVGDARDPAQWWDGQPF 314 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-------CeEEEEcCcccchhhcccCCC
Confidence 56778999999999999999988765 3799999999999999999876533 3678888987654 234689
Q ss_pred eEEeechhhh------c-------CChhh-------HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHH
Q 018970 232 DVIWVQWCIG------H-------LTDDD-------FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFY 291 (348)
Q Consensus 232 D~Ii~~~~l~------~-------~~~~d-------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~ 291 (348)
|.|++..... + ...++ ...+++.+.++|||||.+++++-..... -+.+.
T Consensus 315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~-----------Ene~~ 383 (427)
T PRK10901 315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE-----------ENEQQ 383 (427)
T ss_pred CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-----------hCHHH
Confidence 9999533211 1 11112 2478999999999999999886321100 13345
Q ss_pred HHHHHHhc-CCeEEE
Q 018970 292 FKELFSRC-GLHIYK 305 (348)
Q Consensus 292 l~~l~~~a-Gf~~v~ 305 (348)
+...+++. +|+++.
T Consensus 384 v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 384 IKAFLARHPDAELLD 398 (427)
T ss_pred HHHHHHhCCCCEEec
Confidence 66666654 576554
No 135
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.09 E-value=1.8e-10 Score=100.61 Aligned_cols=140 Identities=16% Similarity=0.243 Sum_probs=106.1
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (348)
Q Consensus 158 ~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~ 237 (348)
...++|||||-|.+...+..++...++.+|.|-.|++.++.--.. .....+.+.|-+.+++.++++|+|+++
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp--------~i~~~~~v~DEE~Ldf~ens~DLiisS 144 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDP--------SIETSYFVGDEEFLDFKENSVDLIISS 144 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCC--------ceEEEEEecchhcccccccchhhhhhh
Confidence 357999999999999999999988999999999999988754211 345778888988899888999999999
Q ss_pred hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc----------eecCCCCcee---c-CHHHHHHHHHhcCCeE
Q 018970 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF----------VLDKEDRSIT---R-SDFYFKELFSRCGLHI 303 (348)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~----------~~d~~~~~~~---~-s~~~l~~l~~~aGf~~ 303 (348)
..+|++. |+...+.+|+..|||+|.|+-+-.....-+ .......+-+ + ....+..++.++||..
T Consensus 145 lslHW~N--dLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m 222 (325)
T KOG2940|consen 145 LSLHWTN--DLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSM 222 (325)
T ss_pred hhhhhhc--cCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCccc
Confidence 9999998 888999999999999999986421111100 0000111111 2 3346888999999997
Q ss_pred EEEe
Q 018970 304 YKSK 307 (348)
Q Consensus 304 v~~~ 307 (348)
....
T Consensus 223 ~tvD 226 (325)
T KOG2940|consen 223 LTVD 226 (325)
T ss_pred ceec
Confidence 7643
No 136
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.09 E-value=5.4e-09 Score=95.02 Aligned_cols=148 Identities=16% Similarity=0.171 Sum_probs=113.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCC---cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CCCC
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETG 229 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~---~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~ 229 (348)
..+.+||||.||.|+.....+...+. +|...|.|+..++..++.+.+.|+ ...+.|.+.|+.+.. .-.-
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL-----~~i~~f~~~dAfd~~~l~~l~p 208 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL-----EDIARFEQGDAFDRDSLAALDP 208 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC-----ccceEEEecCCCCHhHhhccCC
Confidence 56789999999999998888877553 899999999999999999988877 444699999887743 1123
Q ss_pred ceeEEeechhhhcCChhh-HHHHHHHHHHcCCCCcEEEEEec--ccCCCce---e-cC---CCCcee-cCHHHHHHHHHh
Q 018970 230 RYDVIWVQWCIGHLTDDD-FVSFFKRAKVGLKPGGFFVLKEN--IARSGFV---L-DK---EDRSIT-RSDFYFKELFSR 298 (348)
Q Consensus 230 ~fD~Ii~~~~l~~~~~~d-~~~~l~~~~~~LkpgG~lii~~~--~~~~~~~---~-d~---~~~~~~-~s~~~l~~l~~~ 298 (348)
..++++++..++.++|-+ +...++-+.+++.|||++|.+.. .++-.++ . ++ ...... +|..++.++++.
T Consensus 209 ~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~ 288 (311)
T PF12147_consen 209 APTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEA 288 (311)
T ss_pred CCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHH
Confidence 579999999999999844 55579999999999999998752 2222211 1 11 122222 699999999999
Q ss_pred cCCeEEEEee
Q 018970 299 CGLHIYKSKD 308 (348)
Q Consensus 299 aGf~~v~~~~ 308 (348)
+||+-+....
T Consensus 289 aGF~K~~q~I 298 (311)
T PF12147_consen 289 AGFEKIDQRI 298 (311)
T ss_pred cCCchhhhee
Confidence 9999666443
No 137
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.08 E-value=9e-10 Score=108.32 Aligned_cols=110 Identities=20% Similarity=0.111 Sum_probs=82.5
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--CCCce
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRY 231 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~f 231 (348)
+.++.+|||+|||+|..+..++.... ..|+++|+|+.+++.+++++...|+ ...+.+..+|...... ..++|
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~-----~~~v~~~~~d~~~~~~~~~~~~f 310 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL-----TIKAETKDGDGRGPSQWAENEQF 310 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEecccccccccccccccc
Confidence 56778999999999999999987653 3799999999999999999887544 2224445566554432 34689
Q ss_pred eEEeec------hhhhcCCh-------hh-------HHHHHHHHHHcCCCCcEEEEEe
Q 018970 232 DVIWVQ------WCIGHLTD-------DD-------FVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 232 D~Ii~~------~~l~~~~~-------~d-------~~~~l~~~~~~LkpgG~lii~~ 269 (348)
|.|++. +++++.++ ++ ...+|+++.++|||||.|++++
T Consensus 311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 999952 34554442 11 3679999999999999999986
No 138
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.08 E-value=6e-10 Score=108.01 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=82.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCcee
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD 232 (348)
++.+|||+|||+|.++...+..+..+|+++|+|+.+++.|++++...++. ..++++.++|+.++. ...++||
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~----~~~v~~i~~D~~~~l~~~~~~~~~fD 295 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVFKLLRTYRDRGEKFD 295 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----CCcEEEEEccHHHHHHHHHhcCCCCC
Confidence 45789999999999998877666658999999999999999998765431 136889999987752 1235899
Q ss_pred EEeechhhhcCCh-------hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 233 VIWVQWCIGHLTD-------DDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 233 ~Ii~~~~l~~~~~-------~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+|++....-.-.. .++..+++.+.++|+|||.|+...
T Consensus 296 lVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred EEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9998755321111 135667778899999999988754
No 139
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.07 E-value=1.3e-09 Score=107.78 Aligned_cols=108 Identities=18% Similarity=0.221 Sum_probs=82.9
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (348)
+.++.+|||+|||+|..+..++.... ..|+++|+|+.+++.+++++...|+ .++.+.+.|+.++.. .++||
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~------~~v~~~~~Da~~~~~-~~~fD 320 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI------TIIETIEGDARSFSP-EEQPD 320 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC------CeEEEEeCccccccc-CCCCC
Confidence 45678999999999999988876532 2799999999999999999877543 358899999888753 36899
Q ss_pred EEeec------hhhh-------cCChhh-------HHHHHHHHHHcCCCCcEEEEEe
Q 018970 233 VIWVQ------WCIG-------HLTDDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 233 ~Ii~~------~~l~-------~~~~~d-------~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+|++- .++. +...++ ...+|.++.++|||||.+++++
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 99962 1111 112122 3468999999999999999976
No 140
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.06 E-value=4e-09 Score=104.27 Aligned_cols=133 Identities=18% Similarity=0.197 Sum_probs=97.2
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCc
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGR 230 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~ 230 (348)
..++.+|||+|||+|.++..++... ..|+++|+|+.|++.|++++...++ .++++.++|+.+.. ..+++
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~ 367 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGL------DNVTFYHANLEEDFTDQPWALGG 367 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEeChHHhhhhhhhhcCC
Confidence 4566799999999999999998765 4699999999999999998865432 36899999986532 23467
Q ss_pred eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecC
Q 018970 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQK 310 (348)
Q Consensus 231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~ 310 (348)
||+|++...-.- ....++.+.+ ++|+++++++.+.. .+.++. ..|.+.||++......-
T Consensus 368 fD~Vi~dPPr~g-----~~~~~~~l~~-~~~~~ivyvSCnp~-----------tlaRDl----~~L~~~gY~l~~i~~~D 426 (443)
T PRK13168 368 FDKVLLDPPRAG-----AAEVMQALAK-LGPKRIVYVSCNPA-----------TLARDA----GVLVEAGYRLKRAGMLD 426 (443)
T ss_pred CCEEEECcCCcC-----hHHHHHHHHh-cCCCeEEEEEeChH-----------HhhccH----HHHhhCCcEEEEEEEec
Confidence 999998665432 2245555555 69999999987432 122332 24457899999988777
Q ss_pred CCCcc
Q 018970 311 GLPEE 315 (348)
Q Consensus 311 ~~~~~ 315 (348)
-||..
T Consensus 427 mFP~T 431 (443)
T PRK13168 427 MFPHT 431 (443)
T ss_pred cCCCC
Confidence 77754
No 141
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.06 E-value=9.5e-10 Score=101.34 Aligned_cols=109 Identities=15% Similarity=0.087 Sum_probs=82.9
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (348)
+.++.+|||+|||+|..+..++.... ..|+++|+++.+++.+++++...++ .++.+...|...++...+.||
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------LNVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEecCCHHHhhhhccCCC
Confidence 56778999999999999999887643 2799999999999999999877543 357888888877654446799
Q ss_pred EEeech------hhhcC-------Chh-------hHHHHHHHHHHcCCCCcEEEEEe
Q 018970 233 VIWVQW------CIGHL-------TDD-------DFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 233 ~Ii~~~------~l~~~-------~~~-------d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+|++.. ++.+- ..+ ....+|+.+.++|||||+|+.+.
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 999632 22111 111 12469999999999999998775
No 142
>PLN02672 methionine S-methyltransferase
Probab=99.06 E-value=2.3e-09 Score=114.07 Aligned_cols=138 Identities=17% Similarity=0.151 Sum_probs=97.6
Q ss_pred CCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCC----------cCCCcceeEEEcCCCCCCC
Q 018970 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMA----------PDMHKATNFFCVPLQDFTP 226 (348)
Q Consensus 158 ~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~----------~~~~~~i~~~~~d~~~~~~ 226 (348)
+.+|||+|||+|.++..++.... ..|+++|+|+.+++.|++++...++.. .....+++|.+.|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 45899999999999999998765 379999999999999999986543210 0112468999999876442
Q ss_pred C-CCceeEEeechhhh--------------cCC------------------hhh----HHHHHHHHHHcCCCCcEEEEEe
Q 018970 227 E-TGRYDVIWVQWCIG--------------HLT------------------DDD----FVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 227 ~-~~~fD~Ii~~~~l~--------------~~~------------------~~d----~~~~l~~~~~~LkpgG~lii~~ 269 (348)
. ...||+|++|...- |-+ ++| +..++..+.++|+|||++++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 2 13699999874311 100 012 3567788888999999988754
Q ss_pred cccCCCceecCCCCceecCHHHHH-HHHHhcCCeEEEEeecC
Q 018970 270 NIARSGFVLDKEDRSITRSDFYFK-ELFSRCGLHIYKSKDQK 310 (348)
Q Consensus 270 ~~~~~~~~~d~~~~~~~~s~~~l~-~l~~~aGf~~v~~~~~~ 310 (348)
.. ...+.+. ++|++.||+.+..+...
T Consensus 279 G~---------------~q~~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 279 GG---------------RPGQAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred Cc---------------cHHHHHHHHHHHHCCCCeeEEeeeh
Confidence 22 1234577 69999999988765543
No 143
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.03 E-value=7.6e-10 Score=101.24 Aligned_cols=130 Identities=15% Similarity=0.192 Sum_probs=94.8
Q ss_pred hhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcce
Q 018970 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT 214 (348)
Q Consensus 135 ~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i 214 (348)
+....+|++.++.+.. ..+...++|+|||-|..++..-..+...++++|++...++.|+++..+..-......-.+
T Consensus 99 lRnfNNwIKs~LI~~y----~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a 174 (389)
T KOG1975|consen 99 LRNFNNWIKSVLINLY----TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTA 174 (389)
T ss_pred hhhhhHHHHHHHHHHH----hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhccccee
Confidence 4555667777766543 256678999999999998888878888999999999999999987653210000001235
Q ss_pred eEEEcCCCC------CCCCCCceeEEeechhhhcC--ChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970 215 NFFCVPLQD------FTPETGRYDVIWVQWCIGHL--TDDDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 215 ~~~~~d~~~------~~~~~~~fD~Ii~~~~l~~~--~~~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
.|+++|-.. +++.+.+||+|-|+.++|+. +.+...-+|+++..+|+|||+||-+
T Consensus 175 ~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 175 VFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred EEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 677776543 22333459999999999975 2355778999999999999999975
No 144
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.03 E-value=8.1e-10 Score=102.16 Aligned_cols=110 Identities=16% Similarity=0.178 Sum_probs=79.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeEE
Q 018970 157 QHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVI 234 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~I 234 (348)
.+.+||+||||+|.++..++... ..+|+++|+++.+++.+++.+..... .-...++++...|..++- ...++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~--~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG--SYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc--cccCCceEEEECchHHHHHhCCCCccEE
Confidence 44599999999999999888665 44799999999999999998754210 001245777777765432 123689999
Q ss_pred eechhhhcCChhh--HHHHHHHHHHcCCCCcEEEEE
Q 018970 235 WVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 235 i~~~~l~~~~~~d--~~~~l~~~~~~LkpgG~lii~ 268 (348)
++.......+... ...+++.+.+.|+|||.+++.
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 9865432222122 468899999999999999886
No 145
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1.4e-08 Score=86.82 Aligned_cols=123 Identities=17% Similarity=0.176 Sum_probs=91.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
-.+.+|+|+|||||.++...+..++..|+++|+++++++.++++..+. ..++.|.++|+.++. +.+|.++
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-------~g~v~f~~~dv~~~~---~~~dtvi 113 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL-------LGDVEFVVADVSDFR---GKFDTVI 113 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh-------CCceEEEEcchhhcC---CccceEE
Confidence 445689999999999999998888889999999999999999998762 467999999999886 6799999
Q ss_pred echhhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970 236 VQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK 307 (348)
Q Consensus 236 ~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~ 307 (348)
+|..|.-... .| ..|+..+.+.- ..+.+-+. .-+.+.+++..+.+|+.+....
T Consensus 114 mNPPFG~~~rhaD-r~Fl~~Ale~s----~vVYsiH~--------------a~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 114 MNPPFGSQRRHAD-RPFLLKALEIS----DVVYSIHK--------------AGSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred ECCCCccccccCC-HHHHHHHHHhh----heEEEeec--------------cccHHHHHHHHHhcCCeEEEEE
Confidence 9887764322 23 23444444432 11111110 0267788999999998877753
No 146
>PRK01581 speE spermidine synthase; Validated
Probab=99.03 E-value=9.2e-09 Score=97.40 Aligned_cols=143 Identities=20% Similarity=0.200 Sum_probs=94.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHh--CCCCCCCcCCCcceeEEEcCCCCCC-CCCCce
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESL--APENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~--~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~f 231 (348)
..+.+||+||||.|..+..+++.. ..+|+++|+++.|++.|++.. ....- ..--..+++++..|..++. ...++|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~-~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNK-SAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcc-ccCCCCceEEEECcHHHHHHhcCCCc
Confidence 445699999999999999888653 248999999999999999721 11000 0001357889999887743 334689
Q ss_pred eEEeechhhh---cCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970 232 DVIWVQWCIG---HLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD 308 (348)
Q Consensus 232 D~Ii~~~~l~---~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~ 308 (348)
|+|++...-. ....-.-..+++.+.+.|+|||++++..... + . ...-...+.+.++++|+.+.....
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp---~--~-----~~~~~~~i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP---A--D-----APLVYWSIGNTIEHAGLTVKSYHT 297 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh---h--h-----hHHHHHHHHHHHHHhCCceEEEEE
Confidence 9999863211 1111123579999999999999998864211 1 0 000112267889999998776544
Q ss_pred c
Q 018970 309 Q 309 (348)
Q Consensus 309 ~ 309 (348)
.
T Consensus 298 ~ 298 (374)
T PRK01581 298 I 298 (374)
T ss_pred e
Confidence 3
No 147
>PLN02366 spermidine synthase
Probab=99.02 E-value=2.8e-09 Score=99.91 Aligned_cols=111 Identities=18% Similarity=0.214 Sum_probs=81.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCcee
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD 232 (348)
+++.+||+||||.|.++..+++.. ..+|+.+|+++.+++.+++.+...+.. -...+++++..|...+. .+.++||
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~--~~dpRv~vi~~Da~~~l~~~~~~~yD 167 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG--FDDPRVNLHIGDGVEFLKNAPEGTYD 167 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc--cCCCceEEEEChHHHHHhhccCCCCC
Confidence 456799999999999999998653 247999999999999999987642110 01357999999975542 1236899
Q ss_pred EEeechhhhcCChhh--HHHHHHHHHHcCCCCcEEEEE
Q 018970 233 VIWVQWCIGHLTDDD--FVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d--~~~~l~~~~~~LkpgG~lii~ 268 (348)
+|++-..-.+.+... -..+++.+.+.|+|||++++.
T Consensus 168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 999854333222111 357899999999999998764
No 148
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.01 E-value=2e-09 Score=105.87 Aligned_cols=109 Identities=13% Similarity=0.089 Sum_probs=83.4
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhC--CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCce
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~--~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~f 231 (348)
+.++.+|||+|||+|..+..++... ...|+++|+|+.+++.+++++...|+ .++.+...|..+++ ...++|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------SSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhhhhhhhhccC
Confidence 5677899999999999999988764 23799999999999999999877543 35788889988765 334689
Q ss_pred eEEeechh---hhcC---C-------hh-------hHHHHHHHHHHcCCCCcEEEEEe
Q 018970 232 DVIWVQWC---IGHL---T-------DD-------DFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 232 D~Ii~~~~---l~~~---~-------~~-------d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
|.|++... +..+ + .+ ....+|.++.+.|||||.++.+.
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99996321 2211 1 11 13567999999999999998876
No 149
>PRK03612 spermidine synthase; Provisional
Probab=99.00 E-value=2.3e-09 Score=107.78 Aligned_cols=136 Identities=19% Similarity=0.193 Sum_probs=92.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHH--hCCCCCCCcCCCcceeEEEcCCCCCC-CCCCce
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~--~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~f 231 (348)
+++.+|||||||+|..+..+++... .+|+++|+++++++.++++ +........ ..++++++..|..++. ..+++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~-~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGAL-DDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcccc-CCCceEEEEChHHHHHHhCCCCC
Confidence 4567999999999999999986543 5899999999999999984 221100000 0356889999987743 224689
Q ss_pred eEEeechhhhcCCh---hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCe
Q 018970 232 DVIWVQWCIGHLTD---DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLH 302 (348)
Q Consensus 232 D~Ii~~~~l~~~~~---~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~ 302 (348)
|+|++.......+. -...++++.+.+.|||||.+++..... + .+ ......+.+.+++.||.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~---~-~~------~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP---Y-FA------PKAFWSIEATLEAAGLA 438 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc---c-cc------hHHHHHHHHHHHHcCCE
Confidence 99999754332221 012468999999999999998864211 1 00 01123577889999993
No 150
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=3.7e-09 Score=94.45 Aligned_cols=126 Identities=20% Similarity=0.187 Sum_probs=98.7
Q ss_pred cCCCCCcEEEEeccccHHHHHHHHh-CC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCce
Q 018970 154 RNNQHLVALDCGSGIGRITKNLLIR-YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (348)
Q Consensus 154 ~~~~~~~VLDvGcG~G~~~~~la~~-~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f 231 (348)
++.++.+|||.|.|+|.++.+|+.. +. .+|+.+|+-++..+.|++|+...++ ..++++...|+.+...+ ..|
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l-----~d~v~~~~~Dv~~~~~~-~~v 164 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL-----GDRVTLKLGDVREGIDE-EDV 164 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc-----ccceEEEeccccccccc-ccc
Confidence 3789999999999999999999853 33 2899999999999999999988765 45588888898887665 489
Q ss_pred eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKS 306 (348)
Q Consensus 232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~ 306 (348)
|+|+. .++ ++-.++.++.++|||||.+++..+..+ ..+...+.+++.||.-++.
T Consensus 165 Dav~L-----Dmp--~PW~~le~~~~~Lkpgg~~~~y~P~ve--------------Qv~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 165 DAVFL-----DLP--DPWNVLEHVSDALKPGGVVVVYSPTVE--------------QVEKTVEALRERGFVDIEA 218 (256)
T ss_pred CEEEE-----cCC--ChHHHHHHHHHHhCCCcEEEEEcCCHH--------------HHHHHHHHHHhcCccchhh
Confidence 99986 344 777999999999999999998764321 1122445566668776663
No 151
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.98 E-value=4.3e-09 Score=104.09 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=93.9
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhC--CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-CCCce
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRY 231 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~--~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~f 231 (348)
+.++.+|||+|||+|..+..++... ...|+++|+++.+++.+++++...|+ .++.+.+.|+.++.. -.++|
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~~~f 321 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------TNIETKALDARKVHEKFAEKF 321 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCCcccccchhcccC
Confidence 4567899999999999999998764 23799999999999999999877544 248899999877641 12689
Q ss_pred eEEeechhh------hcCC-------hhh-------HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHH
Q 018970 232 DVIWVQWCI------GHLT-------DDD-------FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFY 291 (348)
Q Consensus 232 D~Ii~~~~l------~~~~-------~~d-------~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~ 291 (348)
|+|++.... .+-+ ..+ ...+++.+.++|||||.|+.+.-..... -....
T Consensus 322 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~-----------Ene~v 390 (444)
T PRK14902 322 DKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKE-----------ENEEV 390 (444)
T ss_pred CEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChh-----------hhHHH
Confidence 999975321 1111 111 2468999999999999998765221100 12334
Q ss_pred HHHHHHhc-CCeEEEE
Q 018970 292 FKELFSRC-GLHIYKS 306 (348)
Q Consensus 292 l~~l~~~a-Gf~~v~~ 306 (348)
+...+++. +|+++..
T Consensus 391 v~~~l~~~~~~~~~~~ 406 (444)
T PRK14902 391 IEAFLEEHPEFELVPL 406 (444)
T ss_pred HHHHHHhCCCcEEecc
Confidence 55566665 4776553
No 152
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.96 E-value=2.5e-09 Score=99.01 Aligned_cols=112 Identities=15% Similarity=0.171 Sum_probs=84.8
Q ss_pred CCcEEEEeccccH----HHHHHHHhC---C-C-cEEEEcCCHHHHHHHHHHh------------------CCC-----CC
Q 018970 158 HLVALDCGSGIGR----ITKNLLIRY---F-N-EVDLLEPVSHFLDAARESL------------------APE-----NH 205 (348)
Q Consensus 158 ~~~VLDvGcG~G~----~~~~la~~~---~-~-~v~~vD~S~~~l~~a~~~~------------------~~~-----~~ 205 (348)
..+|+..||++|. ++..+.+.. . . +|+|+|+|+.+|+.|++-. ... +.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999995 333333321 1 1 6999999999999998742 100 00
Q ss_pred --CCcCCCcceeEEEcCCCCCCCC-CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 206 --MAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 206 --~~~~~~~~i~~~~~d~~~~~~~-~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
........+.|...|+.+.+++ .+.||+|+|.+++.|+.++....+++++++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 1122346789999999875432 478999999999999998889999999999999999998864
No 153
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.96 E-value=3.8e-09 Score=93.03 Aligned_cols=105 Identities=16% Similarity=0.115 Sum_probs=78.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeEEe
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDVIW 235 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~Ii 235 (348)
++.+|||+|||+|.++..++.++..+|+++|.++.+++.+++++...+. .++.+.+.|+.++. ...++||+|+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~------~~v~~~~~D~~~~l~~~~~~fDlV~ 126 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA------GNARVVNTNALSFLAQPGTPHNVVF 126 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEEchHHHHHhhcCCCceEEE
Confidence 4569999999999999977767777899999999999999998876432 25888888886632 2234799999
Q ss_pred echhhhcCChhhHHHHHHHHHH--cCCCCcEEEEEec
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKV--GLKPGGFFVLKEN 270 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~--~LkpgG~lii~~~ 270 (348)
+...+..- -...+++.+.. +|+|+|++++..+
T Consensus 127 ~DPPy~~g---~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 127 VDPPFRKG---LLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred ECCCCCCC---hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 99885431 23345555544 4899998888754
No 154
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.94 E-value=5.1e-09 Score=95.12 Aligned_cols=153 Identities=15% Similarity=0.286 Sum_probs=102.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCC-------------cC---------CCc-
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMA-------------PD---------MHK- 212 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~-------------~~---------~~~- 212 (348)
.++.++||||||+-..-..-+...+.+++..|.++..++..++.+.+.+-.+ .. ...
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 3467899999999666544455677799999999999998888766542211 00 001
Q ss_pred ceeEEEcCCCCCCC-C-----CCceeEEeechhhhcCCh--hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCC-
Q 018970 213 ATNFFCVPLQDFTP-E-----TGRYDVIWVQWCIGHLTD--DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDR- 283 (348)
Q Consensus 213 ~i~~~~~d~~~~~~-~-----~~~fD~Ii~~~~l~~~~~--~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~- 283 (348)
--.+..+|+...++ . +.+||+|++..+++.+.. +....+++++.++|||||.|++........+.......
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~ 214 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFP 214 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecc
Confidence 12355667766442 1 135999999999997753 66888999999999999999998877665554443321
Q ss_pred ceecCHHHHHHHHHhcCCeEEEEee
Q 018970 284 SITRSDFYFKELFSRCGLHIYKSKD 308 (348)
Q Consensus 284 ~~~~s~~~l~~l~~~aGf~~v~~~~ 308 (348)
.+..+.+.+++.++++||.+.....
T Consensus 215 ~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 215 CLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp ---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred cccCCHHHHHHHHHHcCCEEEeccc
Confidence 2236899999999999999998884
No 155
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.93 E-value=2.5e-09 Score=94.53 Aligned_cols=113 Identities=18% Similarity=0.260 Sum_probs=86.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------CCC
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PET 228 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~~ 228 (348)
++.+||||||++|+.+.+++...+. .|+.+|.++...+.|++.+...|+ ..++++..+|+.+.- .+.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----~~~I~~~~gda~~~l~~l~~~~~~ 119 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----DDRIEVIEGDALEVLPELANDGEE 119 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----GGGEEEEES-HHHHHHHHHHTTTT
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----CCcEEEEEeccHhhHHHHHhccCC
Confidence 4579999999999999999976543 899999999999999999987655 568999999886531 113
Q ss_pred CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC
Q 018970 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK 280 (348)
Q Consensus 229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~ 280 (348)
++||+|++-.. ..+...+++.+.++|+|||.+++-.... .+.+.+.
T Consensus 120 ~~fD~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN~l~-~G~V~~~ 165 (205)
T PF01596_consen 120 GQFDFVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADNVLW-RGSVADP 165 (205)
T ss_dssp TSEEEEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEETTTG-GGGGGST
T ss_pred CceeEEEEccc-----ccchhhHHHHHhhhccCCeEEEEccccc-cceecCc
Confidence 68999997543 2367788999999999999887755443 4444443
No 156
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.93 E-value=3.9e-08 Score=89.92 Aligned_cols=150 Identities=19% Similarity=0.191 Sum_probs=109.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCC---C-------------------------CCCC
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP---E-------------------------NHMA 207 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~---~-------------------------~~~~ 207 (348)
..+.+||--|||-|+++..++..++. +.+.|.|--|+-..+-.+.. . ...+
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~~-~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGYA-VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccce-EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 44578999999999999999999886 99999999998665442221 0 0000
Q ss_pred ------cCCCcceeEEEcCCCCCCCCC---CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCcee
Q 018970 208 ------PDMHKATNFFCVPLQDFTPET---GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVL 278 (348)
Q Consensus 208 ------~~~~~~i~~~~~d~~~~~~~~---~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~ 278 (348)
.....+.....+|+.++-.++ ++||+|+.++.+...+ ++..+|+.+.++|||||+.|-..+..-+....
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~--Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~ 211 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE--NIIEYIETIEHLLKPGGYWINFGPLLYHFEPM 211 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH--HHHHHHHHHHHHhccCCEEEecCCccccCCCC
Confidence 011245667777877765444 7999999998777655 89999999999999999777655443211111
Q ss_pred -cCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970 279 -DKEDRSITRSDFYFKELFSRCGLHIYKSKD 308 (348)
Q Consensus 279 -d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~ 308 (348)
...+.++..+.+++..+++..||+++....
T Consensus 212 ~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 212 SIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 123445778999999999999999988665
No 157
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.93 E-value=2.5e-08 Score=94.24 Aligned_cols=130 Identities=13% Similarity=0.083 Sum_probs=91.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-CCCceeEEe
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~Ii 235 (348)
++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.|++++...++ .+++|.+.|+.++.. ..+.||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l------~~v~~~~~D~~~~~~~~~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL------TNVQFQALDSTQFATAQGEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEcCHHHHHHhcCCCCeEEE
Confidence 45789999999999999999766 4699999999999999999876433 368999999987642 235799999
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCCCCcc
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEE 315 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~~~~~ 315 (348)
+...-.-+. ..+++.+ ..++|++.++++.+... +.+ .+..+ .||++......--||..
T Consensus 246 ~dPPr~G~~----~~~~~~l-~~~~~~~ivyvsc~p~t-----------~~r---d~~~l---~~y~~~~~~~~DmFP~T 303 (315)
T PRK03522 246 VNPPRRGIG----KELCDYL-SQMAPRFILYSSCNAQT-----------MAK---DLAHL---PGYRIERVQLFDMFPHT 303 (315)
T ss_pred ECCCCCCcc----HHHHHHH-HHcCCCeEEEEECCccc-----------chh---HHhhc---cCcEEEEEEEeccCCCC
Confidence 885522211 2233333 33688888888864321 112 23333 58999888777777754
No 158
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.92 E-value=1.1e-08 Score=96.24 Aligned_cols=147 Identities=11% Similarity=0.041 Sum_probs=92.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCC-CCCCcCCCcceeEEE-cCCCCCC----CCCC
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFC-VPLQDFT----PETG 229 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~-~~~~~~~~~~i~~~~-~d~~~~~----~~~~ 229 (348)
.+.+|||||||+|.+...++.+.+. .++++|+++.+++.|++++... ++ ..++.+.. .+..++. .+.+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-----~~~I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-----NGAIRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----cCcEEEEEccchhhhhhcccccCC
Confidence 5679999999999888877766444 7999999999999999998765 33 34566653 2332221 2346
Q ss_pred ceeEEeechhhhcCChhhH---HHHHHH----------------HHHcCCCCcEEEEEecccCCCceecCCCCcee----
Q 018970 230 RYDVIWVQWCIGHLTDDDF---VSFFKR----------------AKVGLKPGGFFVLKENIARSGFVLDKEDRSIT---- 286 (348)
Q Consensus 230 ~fD~Ii~~~~l~~~~~~d~---~~~l~~----------------~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~---- 286 (348)
.||+|+|+..++.-..+.. ..-.+. ..+++.+||.+-+...+......+.....-++
T Consensus 189 ~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~~~~~~~gwftsmv~ 268 (321)
T PRK11727 189 RFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESKAFAKQVLWFTSLVS 268 (321)
T ss_pred ceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHHHHHhhCcEEEEEee
Confidence 8999999999886443211 111222 23445677776665433322211111111111
Q ss_pred --cCHHHHHHHHHhcCCeEEEEee
Q 018970 287 --RSDFYFKELFSRCGLHIYKSKD 308 (348)
Q Consensus 287 --~s~~~l~~l~~~aGf~~v~~~~ 308 (348)
-+...+.+.+++.|...+...+
T Consensus 269 kk~~l~~l~~~L~~~~~~~~~~~e 292 (321)
T PRK11727 269 KKENLPPLYRALKKVGAVEVKTIE 292 (321)
T ss_pred ccCCHHHHHHHHHHcCCceEEEEE
Confidence 3778899999999996555433
No 159
>PLN02476 O-methyltransferase
Probab=98.92 E-value=1.1e-08 Score=94.10 Aligned_cols=114 Identities=17% Similarity=0.136 Sum_probs=87.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------CC
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE 227 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~ 227 (348)
.++.+|||||+|+|+.+.+++..... .|+.+|.++++.+.|++++...|+ ..++++..+|+.+.- ..
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl-----~~~I~li~GdA~e~L~~l~~~~~ 191 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV-----SHKVNVKHGLAAESLKSMIQNGE 191 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCHHHHHHHHHhccc
Confidence 45679999999999999999864332 699999999999999999988766 457999999886531 11
Q ss_pred CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC
Q 018970 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK 280 (348)
Q Consensus 228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~ 280 (348)
.++||+|++-.. ..+...+++.+.++|+|||.|++ ++....+.+.+.
T Consensus 192 ~~~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~-DNvL~~G~V~d~ 238 (278)
T PLN02476 192 GSSYDFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVM-DNVLWHGRVADP 238 (278)
T ss_pred CCCCCEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEE-ecCccCCcccCc
Confidence 368999997443 24678899999999999999776 555545554443
No 160
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.90 E-value=7.7e-09 Score=91.64 Aligned_cols=124 Identities=22% Similarity=0.322 Sum_probs=92.0
Q ss_pred hhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCC-C-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcc
Q 018970 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (348)
Q Consensus 136 ~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~ 213 (348)
+..-.+|..++. ...+.+|||||.+.|+.+.+++...+ + +++.+|.++++.+.|++++.+.|+ ...
T Consensus 45 ~e~g~~L~~L~~-------~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~-----~~~ 112 (219)
T COG4122 45 PETGALLRLLAR-------LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV-----DDR 112 (219)
T ss_pred hhHHHHHHHHHH-------hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----cce
Confidence 334456666554 34678999999999999999998766 3 799999999999999999998776 445
Q ss_pred eeEEE-cCCCCC-C-CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce
Q 018970 214 TNFFC-VPLQDF-T-PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV 277 (348)
Q Consensus 214 i~~~~-~d~~~~-~-~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~ 277 (348)
+.... +|..+. . ...++||+|++-.. ..+...++..+.++|+|||.+++- |+..++..
T Consensus 113 i~~~~~gdal~~l~~~~~~~fDliFIDad-----K~~yp~~le~~~~lLr~GGliv~D-Nvl~~G~v 173 (219)
T COG4122 113 IELLLGGDALDVLSRLLDGSFDLVFIDAD-----KADYPEYLERALPLLRPGGLIVAD-NVLFGGRV 173 (219)
T ss_pred EEEEecCcHHHHHHhccCCCccEEEEeCC-----hhhCHHHHHHHHHHhCCCcEEEEe-ecccCCcc
Confidence 66776 355442 2 23589999996332 235678999999999999987764 44444443
No 161
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.89 E-value=5.3e-09 Score=91.91 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=79.5
Q ss_pred cEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CCCCceeEEe
Q 018970 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDVIW 235 (348)
Q Consensus 160 ~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~Ii 235 (348)
-+||||||.|.++..+|...++ .+.|+|++...+..+.+++...++ .|+.+.++|+..+- ++++++|-|+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l------~Nv~~~~~da~~~l~~~~~~~~v~~i~ 93 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL------KNVRFLRGDARELLRRLFPPGSVDRIY 93 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT------SSEEEEES-CTTHHHHHSTTTSEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc------cceEEEEccHHHHHhhcccCCchheEE
Confidence 7999999999999999999887 899999999999999887765443 68999999988732 3458999999
Q ss_pred echhhhcCChhh------HHHHHHHHHHcCCCCcEEEEEe
Q 018970 236 VQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 236 ~~~~l~~~~~~d------~~~~l~~~~~~LkpgG~lii~~ 269 (348)
++..=-+..... -..+++.+.++|+|||.|.+.+
T Consensus 94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 865533332111 2579999999999999999976
No 162
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.87 E-value=3e-08 Score=97.79 Aligned_cols=132 Identities=17% Similarity=0.099 Sum_probs=92.3
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCc
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGR 230 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~ 230 (348)
..++.+|||+|||+|.++..++... ..|+++|+|+.|++.|++++...++ .+++|..+|+.++. ...++
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~------~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGI------ANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCC------CceEEEeCCHHHHHHHHHhcCCC
Confidence 4566799999999999999988654 4699999999999999998865432 46899999986531 22357
Q ss_pred eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecC
Q 018970 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQK 310 (348)
Q Consensus 231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~ 310 (348)
||+|++...=..+ ...+++.+.+ ++|++.++++.+.. +...-.+.|.+.||++......-
T Consensus 363 ~D~vi~dPPr~G~----~~~~l~~l~~-l~~~~ivyvsc~p~---------------tlard~~~l~~~gy~~~~~~~~D 422 (431)
T TIGR00479 363 PDVLLLDPPRKGC----AAEVLRTIIE-LKPERIVYVSCNPA---------------TLARDLEFLCKEGYGITWVQPVD 422 (431)
T ss_pred CCEEEECcCCCCC----CHHHHHHHHh-cCCCEEEEEcCCHH---------------HHHHHHHHHHHCCeeEEEEEEec
Confidence 9999975542221 2355665554 78999888875311 11222345677899987766544
Q ss_pred CCC
Q 018970 311 GLP 313 (348)
Q Consensus 311 ~~~ 313 (348)
-||
T Consensus 423 mFP 425 (431)
T TIGR00479 423 MFP 425 (431)
T ss_pred cCC
Confidence 444
No 163
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.85 E-value=2e-08 Score=90.95 Aligned_cols=127 Identities=17% Similarity=0.153 Sum_probs=92.7
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhC-CC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC---CC
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TG 229 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~-~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~ 229 (348)
+.|+.+|||.|.|+|.++..|+... +. +|+..|..+...+.|++++...|+ ..++++...|+.+..+. ..
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----~~~v~~~~~Dv~~~g~~~~~~~ 112 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----DDNVTVHHRDVCEEGFDEELES 112 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----CTTEEEEES-GGCG--STT-TT
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----CCCceeEecceecccccccccC
Confidence 7899999999999999999998653 32 899999999999999999988776 56899999998542221 26
Q ss_pred ceeEEeechhhhcCChhhHHHHHHHHHHcC-CCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGL-KPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK 307 (348)
Q Consensus 230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~L-kpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~ 307 (348)
.+|.|+. .++ ++-.++..+.++| ||||.|++.-++.+ ......+.+++.||..++..
T Consensus 113 ~~DavfL-----Dlp--~Pw~~i~~~~~~L~~~gG~i~~fsP~ie--------------Qv~~~~~~L~~~gf~~i~~~ 170 (247)
T PF08704_consen 113 DFDAVFL-----DLP--DPWEAIPHAKRALKKPGGRICCFSPCIE--------------QVQKTVEALREHGFTDIETV 170 (247)
T ss_dssp SEEEEEE-----ESS--SGGGGHHHHHHHE-EEEEEEEEEESSHH--------------HHHHHHHHHHHTTEEEEEEE
T ss_pred cccEEEE-----eCC--CHHHHHHHHHHHHhcCCceEEEECCCHH--------------HHHHHHHHHHHCCCeeeEEE
Confidence 7999986 344 5567899999999 89999988764431 12234567778899887743
No 164
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.84 E-value=2.8e-09 Score=91.83 Aligned_cols=154 Identities=19% Similarity=0.247 Sum_probs=105.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
..+.++||+|+|.|.++..++ ..+.+|.+.+.|..|....+.+- |.+....++...+-+||+|.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk~---------------ynVl~~~ew~~t~~k~dli~ 174 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKKN---------------YNVLTEIEWLQTDVKLDLIL 174 (288)
T ss_pred CCCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhcC---------------CceeeehhhhhcCceeehHH
Confidence 445799999999999999876 55668999999999999887542 12233333433345799999
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCC-CcEEEEEecccCCCcee--------------cCCCCceecCHHHHHHHHHhcC
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKP-GGFFVLKENIARSGFVL--------------DKEDRSITRSDFYFKELFSRCG 300 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~Lkp-gG~lii~~~~~~~~~~~--------------d~~~~~~~~s~~~l~~l~~~aG 300 (348)
|-+.+...- ++-++++.+..+|.| +|..|++-...-..++. .....++.-....+.++|+.+|
T Consensus 175 clNlLDRc~--~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g 252 (288)
T KOG3987|consen 175 CLNLLDRCF--DPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCG 252 (288)
T ss_pred HHHHHHhhc--ChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcC
Confidence 999998766 788999999999999 89888864322222211 1111122122334678899999
Q ss_pred CeEEEEeecCCCCcc-------ceEEEEEEEeec
Q 018970 301 LHIYKSKDQKGLPEE-------LFAVKMYALTAE 327 (348)
Q Consensus 301 f~~v~~~~~~~~~~~-------l~~v~~~~l~~~ 327 (348)
|.+..+.+.+..++. +.+-.+|.|+|+
T Consensus 253 ~~veawTrlPYLCEGDm~ns~Y~L~Daifvlkp~ 286 (288)
T KOG3987|consen 253 YRVEAWTRLPYLCEGDMHNSFYWLIDAIFVLKPK 286 (288)
T ss_pred chhhhhhcCCeecccccccceEEecceEEEecCC
Confidence 998888777665542 235566666654
No 165
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.83 E-value=3.5e-09 Score=102.73 Aligned_cols=179 Identities=17% Similarity=0.162 Sum_probs=102.0
Q ss_pred hhhccccccccccccccCcccccccChhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCc--EEEE
Q 018970 109 GISYWEGVEASVDGVLGGFGNVNEVDIKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNE--VDLL 186 (348)
Q Consensus 109 ~~~yW~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~--v~~v 186 (348)
+.+-|-....+.-.+-+| +.++........+.+..++..... ...-..+||+|||.|.++.+|++++... +..-
T Consensus 73 ~~qnWv~~~gd~~~FPgg-gt~F~~Ga~~Yid~i~~~~~~~~~---~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~ 148 (506)
T PF03141_consen 73 ADQNWVRVEGDKFRFPGG-GTMFPHGADHYIDQIAEMIPLIKW---GGGIRTALDVGCGVASFGAYLLERNVTTMSFAPN 148 (506)
T ss_pred ccccceeecCCEEEeCCC-CccccCCHHHHHHHHHHHhhcccc---CCceEEEEeccceeehhHHHHhhCCceEEEcccc
Confidence 345555443332222222 334433333333445555432111 1223468999999999999999886641 2223
Q ss_pred cCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970 187 EPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (348)
Q Consensus 187 D~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~li 266 (348)
|..+.++..|-++ |+ -..+-...-..+|+++++||+|.|+.++......+ ..+|-++.|+|+|||+++
T Consensus 149 d~~~~qvqfaleR----Gv-------pa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv 216 (506)
T PF03141_consen 149 DEHEAQVQFALER----GV-------PAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFV 216 (506)
T ss_pred cCCchhhhhhhhc----Cc-------chhhhhhccccccCCccchhhhhcccccccchhcc-cceeehhhhhhccCceEE
Confidence 4445566666443 11 11111223467888899999999999988766533 468899999999999999
Q ss_pred EEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970 267 LKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD 308 (348)
Q Consensus 267 i~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~ 308 (348)
.+..... ...+....-.-+.+.++.+...++.+....
T Consensus 217 ~S~ppv~-----~r~~~~~~~~~~~~~~l~~~lCW~~va~~~ 253 (506)
T PF03141_consen 217 LSGPPVY-----QRTDEDLEEEWNAMEDLAKSLCWKKVAEKG 253 (506)
T ss_pred ecCCccc-----ccchHHHHHHHHHHHHHHHHHHHHHheeeC
Confidence 9864332 000111111223456666666676665443
No 166
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.81 E-value=1.2e-08 Score=94.92 Aligned_cols=107 Identities=20% Similarity=0.168 Sum_probs=83.6
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
+-.+..|||||||+|.++...++.|...|+++|.|. +++.|++.+...++ ...+++..+.++++..+..++|+|
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~-----~~ii~vi~gkvEdi~LP~eKVDiI 131 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGL-----EDVITVIKGKVEDIELPVEKVDII 131 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCc-----cceEEEeecceEEEecCccceeEE
Confidence 345679999999999999999988988999999875 55999998877655 456899999888876666799999
Q ss_pred eechhhhcCCh-hhHHHHHHHHHHcCCCCcEEEE
Q 018970 235 WVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVL 267 (348)
Q Consensus 235 i~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii 267 (348)
++-|+=+.+-- .=+..+|-.=-+.|+|||.++=
T Consensus 132 vSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 132 VSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred eehhhhHHHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 98665443321 1245566666789999999874
No 167
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.81 E-value=4.5e-08 Score=81.81 Aligned_cols=117 Identities=17% Similarity=0.185 Sum_probs=93.5
Q ss_pred HHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeE
Q 018970 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (348)
Q Consensus 139 ~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~ 216 (348)
..++.+.+...+. +..+.-|||+|.|||-++..++.++.. .++++|.|++......+.+.. +++
T Consensus 33 Ss~lA~~M~s~I~---pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~-----------~~i 98 (194)
T COG3963 33 SSILARKMASVID---PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG-----------VNI 98 (194)
T ss_pred cHHHHHHHHhccC---cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC-----------ccc
Confidence 3444444444433 566778999999999999999998765 899999999999999988765 457
Q ss_pred EEcCCCCCC-----CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 217 FCVPLQDFT-----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 217 ~~~d~~~~~-----~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+.+|+.++. ..+..||.|+|.-.+-.++-....++++.+...|.+||.++-..
T Consensus 99 i~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 99 INGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred cccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 777776654 23457999999999998887777889999999999999988654
No 168
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.81 E-value=1.6e-07 Score=82.27 Aligned_cols=142 Identities=18% Similarity=0.216 Sum_probs=97.0
Q ss_pred hHHHHHHHHhhhcCC-ccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeE
Q 018970 138 SEAFLQMLLSDRFPN-ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (348)
Q Consensus 138 ~~~~l~~~l~~~l~~-~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~ 216 (348)
+..++..++...... .......++|||||=+......- ...+ .|+.+|.++. .-.+
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~-~~~f-dvt~IDLns~---------------------~~~I 87 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST-SGWF-DVTRIDLNSQ---------------------HPGI 87 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCcccc-cCce-eeEEeecCCC---------------------CCCc
Confidence 344555555443321 11223479999999755443321 1234 4999997641 2335
Q ss_pred EEcCCCCCCC---CCCceeEEeechhhhcCCh-hhHHHHHHHHHHcCCCCcE-----EEEEecccCCCceecCCCCceec
Q 018970 217 FCVPLQDFTP---ETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGF-----FVLKENIARSGFVLDKEDRSITR 287 (348)
Q Consensus 217 ~~~d~~~~~~---~~~~fD~Ii~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~-----lii~~~~~~~~~~~d~~~~~~~~ 287 (348)
...|+.+.|. +.++||+|.++.+|.++++ ...-.+++++++.|+|+|. |++.-+..- ..++-..
T Consensus 88 ~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C-------v~NSRy~ 160 (219)
T PF11968_consen 88 LQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC-------VTNSRYM 160 (219)
T ss_pred eeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH-------hhccccc
Confidence 6677777664 3578999999999999996 6677899999999999999 777653321 1233335
Q ss_pred CHHHHHHHHHhcCCeEEEEeec
Q 018970 288 SDFYFKELFSRCGLHIYKSKDQ 309 (348)
Q Consensus 288 s~~~l~~l~~~aGf~~v~~~~~ 309 (348)
+.+.|..+++..||..+.....
T Consensus 161 ~~~~l~~im~~LGf~~~~~~~~ 182 (219)
T PF11968_consen 161 TEERLREIMESLGFTRVKYKKS 182 (219)
T ss_pred CHHHHHHHHHhCCcEEEEEEec
Confidence 7889999999999999987654
No 169
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.80 E-value=1.3e-08 Score=87.79 Aligned_cols=110 Identities=18% Similarity=0.101 Sum_probs=73.5
Q ss_pred CCCCCcEEEEeccccHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCC
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG 229 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~ 229 (348)
..++.+|||+|||+|..+..++.. +...|+..|.++ .++.++.++...+. ....++.+...|+.+-. .+.+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~---~~~~~v~v~~L~Wg~~~~~~~~~~~ 118 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS---LLDGRVSVRPLDWGDELDSDLLEPH 118 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS-S
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc---cccccccCcEEEecCcccccccccc
Confidence 456779999999999999988866 455899999998 89999888765431 11356777777775521 2336
Q ss_pred ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (348)
Q Consensus 230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~ 270 (348)
+||+|+++.+++.- +....+++.+.++|+|+|.+++...
T Consensus 119 ~~D~IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 119 SFDVILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp SBSEEEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred cCCEEEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 89999999999973 4788999999999999998777653
No 170
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.80 E-value=6.4e-08 Score=93.62 Aligned_cols=130 Identities=13% Similarity=0.097 Sum_probs=93.6
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-CCCceeEEe
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVIW 235 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~Ii 235 (348)
++.+|||+|||+|.++..++..+ ..|+++|+|+.+++.|++++...++ .+++|.+.|+.++.. ..++||+|+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~------~~~~~~~~d~~~~~~~~~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGL------DNLSFAALDSAKFATAQMSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHHHHhcCCCCCEEE
Confidence 34689999999999999998665 4699999999999999999866432 368999999876432 124699999
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCCCCcc
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEE 315 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~~~~~ 315 (348)
+...-..+. ..+++.+.+ ++|++.++++.+.. .+.++ +..+ .||++.......-||..
T Consensus 306 ~DPPr~G~~----~~~l~~l~~-~~p~~ivyvsc~p~-----------TlaRD---l~~L---~gy~l~~~~~~DmFPqT 363 (374)
T TIGR02085 306 VNPPRRGIG----KELCDYLSQ-MAPKFILYSSCNAQ-----------TMAKD---IAEL---SGYQIERVQLFDMFPHT 363 (374)
T ss_pred ECCCCCCCc----HHHHHHHHh-cCCCeEEEEEeCHH-----------HHHHH---HHHh---cCceEEEEEEeccCCCC
Confidence 987644322 345555543 79999999986421 11122 2223 69999988877777753
No 171
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.80 E-value=4.7e-08 Score=88.75 Aligned_cols=124 Identities=18% Similarity=0.203 Sum_probs=91.8
Q ss_pred HHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeE
Q 018970 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNF 216 (348)
Q Consensus 139 ~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~ 216 (348)
-.+|..++. ..+..+|||||+++|+.+.+++...+. +|+.+|.++...+.|++.+...|+ ..++++
T Consensus 68 g~lL~~l~~-------~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~-----~~~I~~ 135 (247)
T PLN02589 68 GQFLNMLLK-------LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV-----AHKIDF 135 (247)
T ss_pred HHHHHHHHH-------HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCceEE
Confidence 355555554 234579999999999999999865432 799999999999999999988766 467999
Q ss_pred EEcCCCCCCC-------CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC
Q 018970 217 FCVPLQDFTP-------ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK 280 (348)
Q Consensus 217 ~~~d~~~~~~-------~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~ 280 (348)
..+++.+.-. ..++||+|++-.- .+....+++.+.+.|+|||.|++ ++....+.+.+.
T Consensus 136 ~~G~a~e~L~~l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~-DNvl~~G~v~~~ 200 (247)
T PLN02589 136 REGPALPVLDQMIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGY-DNTLWNGSVVAP 200 (247)
T ss_pred EeccHHHHHHHHHhccccCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEE-cCCCCCCcccCc
Confidence 9998766311 1268999996433 23567888999999999999665 555555554443
No 172
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.78 E-value=6.2e-08 Score=88.73 Aligned_cols=113 Identities=19% Similarity=0.288 Sum_probs=85.6
Q ss_pred CCCcEEEEeccccH----HHHHHHHhCC-----C-cEEEEcCCHHHHHHHHHHhCC-----CCCC---------------
Q 018970 157 QHLVALDCGSGIGR----ITKNLLIRYF-----N-EVDLLEPVSHFLDAARESLAP-----ENHM--------------- 206 (348)
Q Consensus 157 ~~~~VLDvGcG~G~----~~~~la~~~~-----~-~v~~vD~S~~~l~~a~~~~~~-----~~~~--------------- 206 (348)
...+|+-.||++|. ++..+.+.+. . .|+++|+|..+|+.|+.-.=. .++.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 47799999999994 4444444432 2 799999999999999762211 1110
Q ss_pred ---CcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 207 ---APDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 207 ---~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
.......+.|...|+.+-.+..+.||+|+|.+|+.++..+....++++++..|+|||+|++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 012235788888888776633478999999999999998888999999999999999999964
No 173
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=5.9e-07 Score=76.21 Aligned_cols=141 Identities=16% Similarity=0.068 Sum_probs=98.5
Q ss_pred CCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 158 ~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
..-+||||||+|..+..|++.... .+.++|++|.+++...+.+..+ ..+++..+.|+.+--.+ ++.|+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n-------~~~~~~V~tdl~~~l~~-~~VDvLv 115 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN-------RVHIDVVRTDLLSGLRN-ESVDVLV 115 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc-------CCccceeehhHHhhhcc-CCccEEE
Confidence 557999999999999988876433 6889999999999987776543 34577888888764434 7899998
Q ss_pred echhhhcCCh-------------------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHH
Q 018970 236 VQWCIGHLTD-------------------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELF 296 (348)
Q Consensus 236 ~~~~l~~~~~-------------------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~ 296 (348)
.+...---++ +-...++..+-.+|.|.|++++..... -...++.+++
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~--------------N~p~ei~k~l 181 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA--------------NKPKEILKIL 181 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh--------------cCHHHHHHHH
Confidence 7644322211 114567778888999999999875332 1345677799
Q ss_pred HhcCCeEEEEeecCCCCccceEEE
Q 018970 297 SRCGLHIYKSKDQKGLPEELFAVK 320 (348)
Q Consensus 297 ~~aGf~~v~~~~~~~~~~~l~~v~ 320 (348)
+.-||..........-.+.++-.+
T Consensus 182 ~~~g~~~~~~~~Rk~~~E~l~ilk 205 (209)
T KOG3191|consen 182 EKKGYGVRIAMQRKAGGETLSILK 205 (209)
T ss_pred hhcccceeEEEEEecCCceEEEEE
Confidence 999998777555443333344333
No 174
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.75 E-value=5.4e-08 Score=87.34 Aligned_cols=134 Identities=19% Similarity=0.140 Sum_probs=78.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHH-HHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA-ARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~-a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
.++.+|||+|||+|.++..+++.+...|+++|+++.|+.. .++...-..+ . ..|+. ..+.+++...-..+|++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~---~-~~ni~--~~~~~~~~~d~~~~Dvs 147 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVL---E-RTNIR--YVTPADIFPDFATFDVS 147 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEe---e-cCCcc--cCCHhHcCCCceeeeEE
Confidence 3566899999999999999998877789999999988876 3322110000 0 01122 22222222222468887
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe-ccc--------CCCceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE-NIA--------RSGFVLDKEDRSITRSDFYFKELFSRCGLHIYK 305 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~-~~~--------~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~ 305 (348)
+++..+ .+..+.++|+| |.+++.- +-. ..+.+.|. .....-.+.+...+.+.||.+..
T Consensus 148 fiS~~~----------~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~--~~~~~~~~~~~~~~~~~~~~~~~ 214 (228)
T TIGR00478 148 FISLIS----------ILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDK--EAIALALHKVIDKGESPDFQEKK 214 (228)
T ss_pred EeehHh----------HHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCH--HHHHHHHHHHHHHHHcCCCeEee
Confidence 775553 46778888999 7666532 111 11111111 11112344566777788999877
Q ss_pred Eee
Q 018970 306 SKD 308 (348)
Q Consensus 306 ~~~ 308 (348)
...
T Consensus 215 ~~~ 217 (228)
T TIGR00478 215 IIF 217 (228)
T ss_pred EEE
Confidence 554
No 175
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.72 E-value=1.1e-07 Score=87.32 Aligned_cols=77 Identities=13% Similarity=0.092 Sum_probs=64.7
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
..++.+|||||||+|.++..++.... .|+++|+++.|++.+++++.. ..++++.++|+.+++.+ .||.|
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~--------~~~v~ii~~D~~~~~~~--~~d~V 95 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA--------AGNVEIIEGDALKVDLP--EFNKV 95 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc--------CCCEEEEEeccccCCch--hceEE
Confidence 45678999999999999999998754 699999999999999988754 24689999999887754 48999
Q ss_pred eechhhhc
Q 018970 235 WVQWCIGH 242 (348)
Q Consensus 235 i~~~~l~~ 242 (348)
+++..++.
T Consensus 96 v~NlPy~i 103 (258)
T PRK14896 96 VSNLPYQI 103 (258)
T ss_pred EEcCCccc
Confidence 99877653
No 176
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.72 E-value=5.5e-08 Score=85.11 Aligned_cols=105 Identities=16% Similarity=0.046 Sum_probs=76.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-C-C-CCC-cee
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-T-P-ETG-RYD 232 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~-~~~-~fD 232 (348)
.+.+|||++||+|.++..++.++...|+++|.++.+++.+++++...++ ..++++.+.|+.++ . . ... .||
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~-----~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS-----GEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----cccEEEEehhHHHHHHHhhccCCCce
Confidence 4578999999999999999999887899999999999999998876433 23578888888553 1 1 112 478
Q ss_pred EEeechhhhcCChhhHHHHHHHHH--HcCCCCcEEEEEe
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLKE 269 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~--~~LkpgG~lii~~ 269 (348)
+|+.-..+.. . .....+..+. .+|+++|.+++..
T Consensus 124 vv~~DPPy~~-~--~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 124 VIYLDPPFFN-G--ALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred EEEECcCCCC-C--cHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 8888766653 1 2344455443 4688888777653
No 177
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.72 E-value=5e-07 Score=85.02 Aligned_cols=110 Identities=18% Similarity=0.123 Sum_probs=80.3
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhC-----CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC----C
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----T 225 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~-----~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~ 225 (348)
+.++..++|+|||+|.=+..|++.. ...++.+|+|..+|+.+.+.+....+. ...+.-+++|..+. +
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p----~l~v~~l~gdy~~~l~~l~ 149 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS----HVRCAGLLGTYDDGLAWLK 149 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC----CeEEEEEEecHHHHHhhcc
Confidence 4566789999999999887776543 226999999999999999988722110 12334467777552 2
Q ss_pred C--CCCceeEEee-chhhhcCChhhHHHHHHHHHH-cCCCCcEEEEE
Q 018970 226 P--ETGRYDVIWV-QWCIGHLTDDDFVSFFKRAKV-GLKPGGFFVLK 268 (348)
Q Consensus 226 ~--~~~~fD~Ii~-~~~l~~~~~~d~~~~l~~~~~-~LkpgG~lii~ 268 (348)
. ......+|+. ..+|.++++++...+|+++.+ .|+|||.|++.
T Consensus 150 ~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 150 RPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred cccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 1 1123456655 569999999889999999999 99999999984
No 178
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.71 E-value=1e-07 Score=85.62 Aligned_cols=109 Identities=22% Similarity=0.254 Sum_probs=78.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-----CCCCCCc
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-----FTPETGR 230 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-----~~~~~~~ 230 (348)
.+..|||+|||+|.++..++...++ .|+++|.|+.++..|.+++...++ ...+.++..+++. .+...++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l-----~g~i~v~~~~me~d~~~~~~l~~~~ 222 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL-----SGRIEVIHNIMESDASDEHPLLEGK 222 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh-----cCceEEEecccccccccccccccCc
Confidence 4458999999999999999877655 899999999999999999877655 3445555444332 2233489
Q ss_pred eeEEeechhhhcCCh------------------------hhHHHHHHHHHHcCCCCcEEEEEec
Q 018970 231 YDVIWVQWCIGHLTD------------------------DDFVSFFKRAKVGLKPGGFFVLKEN 270 (348)
Q Consensus 231 fD~Ii~~~~l~~~~~------------------------~d~~~~l~~~~~~LkpgG~lii~~~ 270 (348)
+|+++++...-.-.| +.+..++.-+.|+|+|||.+.+.-.
T Consensus 223 ~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 223 IDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred eeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 999999854221110 1234567778899999999988654
No 179
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.70 E-value=4.9e-08 Score=87.46 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=84.6
Q ss_pred CcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CCCCceeEE
Q 018970 159 LVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDVI 234 (348)
Q Consensus 159 ~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~I 234 (348)
..+||||||.|.+...+|.+.++ .+.|+|+....+..|-+++.+.++ .|+.+.+.|+..+- +++++.|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l------~Nlri~~~DA~~~l~~~~~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL------KNLRLLCGDAVEVLDYLIPDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC------CcEEEEcCCHHHHHHhcCCCCCeeEE
Confidence 47999999999999999999887 899999999999999988877643 28999999887643 445699999
Q ss_pred eechhhhcCChhh------HHHHHHHHHHcCCCCcEEEEEe
Q 018970 235 WVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 235 i~~~~l~~~~~~d------~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+.++.=-+..... ...+++.+.+.|+|||.|.+.+
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 9865533222111 3579999999999999999975
No 180
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.70 E-value=2.2e-07 Score=86.08 Aligned_cols=131 Identities=18% Similarity=0.234 Sum_probs=88.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhC--CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~--~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
.+.+|||+|||+|..+-.+.+.. ..+++++|.|+.|++.++..+..... .....+......+.. +-...|+|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~-----~~~~~~~~~~~~~~~-~~~~~DLv 106 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN-----NRNAEWRRVLYRDFL-PFPPDDLV 106 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc-----cccchhhhhhhcccc-cCCCCcEE
Confidence 45689999999998766554432 33899999999999999987764211 011111111111111 11234999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYK 305 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~ 305 (348)
+++++|..++++....+++.+.+.+.+ .|++.|+....+| ......++.|.+.|+.++.
T Consensus 107 i~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf----------~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 107 IASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGF----------RRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred EEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHH----------HHHHHHHHHHhhCCCceEC
Confidence 999999999987788889999888766 8888887655554 2334566777777777666
No 181
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.68 E-value=1.7e-07 Score=85.89 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=62.1
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee--
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD-- 232 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD-- 232 (348)
..++.+|||||||+|.++..++..+. .|+++|+++.+++.+++++.. ..++++..+|+.+++.. .||
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~--------~~~v~v~~~D~~~~~~~--~~d~~ 95 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL--------YERLEVIEGDALKVDLP--DFPKQ 95 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc--------CCcEEEEECchhcCChh--HcCCc
Confidence 45678999999999999999998776 499999999999999988753 35688999999887754 466
Q ss_pred -EEeechhhh
Q 018970 233 -VIWVQWCIG 241 (348)
Q Consensus 233 -~Ii~~~~l~ 241 (348)
+|+++..++
T Consensus 96 ~~vvsNlPy~ 105 (253)
T TIGR00755 96 LKVVSNLPYN 105 (253)
T ss_pred ceEEEcCChh
Confidence 777766644
No 182
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.68 E-value=4.6e-08 Score=96.25 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=73.7
Q ss_pred CCcEEEEeccccHHHHHHHHhC-----CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970 158 HLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (348)
Q Consensus 158 ~~~VLDvGcG~G~~~~~la~~~-----~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (348)
+..|||||||+|.++...++.+ ..+|+++|-|+.++...++.+...++ ..+++++.+|++++..+ .++|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w-----~~~V~vi~~d~r~v~lp-ekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW-----GDKVTVIHGDMREVELP-EKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT-----TTTEEEEES-TTTSCHS-S-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC-----CCeEEEEeCcccCCCCC-Ccee
Confidence 5689999999999987766544 33899999999988887766444333 56799999999999876 5899
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~li 266 (348)
+||+-+.=.....+-....|....+.|||||.++
T Consensus 261 IIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 261 IIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 9998443222222345567888999999998876
No 183
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.68 E-value=7.2e-08 Score=89.26 Aligned_cols=77 Identities=16% Similarity=0.075 Sum_probs=62.9
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
..++.+|||||||+|.++..++.++. +|+++|+++.|++.+++++.. .++++..+|+.+++.++-.+|.|
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---------~~v~~i~~D~~~~~~~~~~~~~v 109 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---------DNLTIIEGDALKVDLSELQPLKV 109 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---------CceEEEEChhhcCCHHHcCcceE
Confidence 45678999999999999999998876 699999999999999987642 46899999999887542225888
Q ss_pred eechhhh
Q 018970 235 WVQWCIG 241 (348)
Q Consensus 235 i~~~~l~ 241 (348)
+++...+
T Consensus 110 v~NlPY~ 116 (272)
T PRK00274 110 VANLPYN 116 (272)
T ss_pred EEeCCcc
Confidence 8876644
No 184
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.65 E-value=1.2e-07 Score=87.38 Aligned_cols=104 Identities=21% Similarity=0.202 Sum_probs=82.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~ 236 (348)
.+..|||+|||+|.++...+..+..+|++++.| +|.+.|+..++...+ ..+|.++.+-++++..+ ++.|+||+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~-----~~rItVI~GKiEdieLP-Ek~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNL-----ADRITVIPGKIEDIELP-EKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCc-----cceEEEccCccccccCc-hhccEEEe
Confidence 456799999999999998888898899999975 699999998876543 57899999999998876 78999998
Q ss_pred chhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (348)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii 267 (348)
-.+=..+-.+....-.-.+.+.|||.|..+=
T Consensus 250 EPMG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 250 EPMGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred ccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 5443333334444545566799999998764
No 185
>PLN02823 spermine synthase
Probab=98.60 E-value=4.5e-07 Score=86.06 Aligned_cols=110 Identities=19% Similarity=0.236 Sum_probs=79.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCceeE
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRYDV 233 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~ 233 (348)
..+.+||.||+|.|..+..+++.. ..+|+.+|+++.+++.|++.+....-. -...+++++..|...+- ...++||+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~--~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREA--FCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccc--ccCCceEEEEChhHHHHhhCCCCccE
Confidence 345789999999999999988653 448999999999999999987632100 01357889998887753 23468999
Q ss_pred EeechhhhcC---Chh--hHHHHHH-HHHHcCCCCcEEEEE
Q 018970 234 IWVQWCIGHL---TDD--DFVSFFK-RAKVGLKPGGFFVLK 268 (348)
Q Consensus 234 Ii~~~~l~~~---~~~--d~~~~l~-~~~~~LkpgG~lii~ 268 (348)
|++-.. ... +.. --..+++ .+.+.|+|||++++.
T Consensus 180 Ii~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 180 IIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 997521 110 000 1246888 899999999998764
No 186
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.57 E-value=2.2e-07 Score=81.76 Aligned_cols=144 Identities=15% Similarity=0.067 Sum_probs=101.5
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCcee
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYD 232 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD 232 (348)
+..+.+|||...|-|+.++..++++..+|.-++.++..++.|.-+-=.. .-....+.++.+|..++. +++.+||
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr----~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSR----ELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCc----cccccccEEecccHHHHHhcCCccccc
Confidence 5678899999999999999999999978999999999998876442111 111345788888876643 5678999
Q ss_pred EEeec-hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970 233 VIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQ 309 (348)
Q Consensus 233 ~Ii~~-~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~ 309 (348)
+|+-- .=|.+...-.-..|.++++|+|||||.++-........+ .. .--...+.+.|.++||.++.....
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry-rG------~d~~~gVa~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY-RG------LDLPKGVAERLRRVGFEVVKKVRE 278 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc-cc------CChhHHHHHHHHhcCceeeeeehh
Confidence 99842 122222222346899999999999999987653322111 00 012346888999999998876544
No 187
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.56 E-value=1.7e-07 Score=87.49 Aligned_cols=82 Identities=13% Similarity=0.048 Sum_probs=65.7
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
..++.+|||||||+|.++..++.... .|+++|+++.|++.+++++...+. ..++++...|+.+... ..||+|
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~-----~~~v~ii~~Dal~~~~--~~~d~V 105 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPL-----ASKLEVIEGDALKTEF--PYFDVC 105 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCC-----CCcEEEEECCHhhhcc--cccCEE
Confidence 56778999999999999999987755 599999999999999998865322 2568999999987664 368999
Q ss_pred eechhhhcCC
Q 018970 235 WVQWCIGHLT 244 (348)
Q Consensus 235 i~~~~l~~~~ 244 (348)
+++...+-.+
T Consensus 106 vaNlPY~Ist 115 (294)
T PTZ00338 106 VANVPYQISS 115 (294)
T ss_pred EecCCcccCc
Confidence 9876655433
No 188
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.55 E-value=7.1e-08 Score=92.08 Aligned_cols=148 Identities=19% Similarity=0.185 Sum_probs=111.2
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
..++..++|+|||.|....++..-....++++|.++..+..+.......++ .....+...|+...+++++.||.+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l-----~~k~~~~~~~~~~~~fedn~fd~v 182 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYL-----DNKCNFVVADFGKMPFEDNTFDGV 182 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHh-----hhhcceehhhhhcCCCCccccCcE
Confidence 456668999999999999998876666899999999999988876655433 345666778999999999999999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce------ecCCCCc-------eecCHHHHHHHHHhcCC
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV------LDKEDRS-------ITRSDFYFKELFSRCGL 301 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~------~d~~~~~-------~~~s~~~l~~l~~~aGf 301 (348)
.+..+..|.+ +...++++++++++|||++++.+.+....+. .+..... .......+-++++..||
T Consensus 183 ~~ld~~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~ 260 (364)
T KOG1269|consen 183 RFLEVVCHAP--DLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGF 260 (364)
T ss_pred EEEeecccCC--cHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhccc
Confidence 9999999999 8889999999999999999997654332221 1111000 11233346677788888
Q ss_pred eEEEEeec
Q 018970 302 HIYKSKDQ 309 (348)
Q Consensus 302 ~~v~~~~~ 309 (348)
..+..+..
T Consensus 261 ~~~~~~~d 268 (364)
T KOG1269|consen 261 EHLKLEKD 268 (364)
T ss_pred hhhhhccc
Confidence 87774443
No 189
>PRK04148 hypothetical protein; Provisional
Probab=98.53 E-value=1.2e-06 Score=71.66 Aligned_cols=92 Identities=16% Similarity=0.136 Sum_probs=69.3
Q ss_pred CCCcEEEEeccccH-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-CCceeEE
Q 018970 157 QHLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVI 234 (348)
Q Consensus 157 ~~~~VLDvGcG~G~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~I 234 (348)
++.+|||||||.|. ++..|.+.+. .|+++|+++..++.++++. +++...|+.+-.+. -..+|+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~-------------~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLG-------------LNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhC-------------CeEEECcCCCCCHHHHhcCCEE
Confidence 45789999999996 8888886666 5999999999999887763 56888898875533 3578999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
.+...-. ++...+.++++-+ |.-++|..
T Consensus 82 ysirpp~-----el~~~~~~la~~~--~~~~~i~~ 109 (134)
T PRK04148 82 YSIRPPR-----DLQPFILELAKKI--NVPLIIKP 109 (134)
T ss_pred EEeCCCH-----HHHHHHHHHHHHc--CCCEEEEc
Confidence 9866533 6777777777744 45566654
No 190
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.52 E-value=6.6e-07 Score=86.10 Aligned_cols=110 Identities=17% Similarity=0.139 Sum_probs=87.3
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCceeE
Q 018970 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDV 233 (348)
Q Consensus 158 ~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~ 233 (348)
+.+|||+=|=||.++.+.+..+..+|+.||.|...++.|++++.-+|+. ...+.|++.|+.++- ....+||+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~----~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD----GDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC----ccceeeehhhHHHHHHHHHhcCCcccE
Confidence 7899999999999999998888878999999999999999998765542 345789999987753 22348999
Q ss_pred Eeech-hhhcCC------hhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970 234 IWVQW-CIGHLT------DDDFVSFFKRAKVGLKPGGFFVLKENI 271 (348)
Q Consensus 234 Ii~~~-~l~~~~------~~d~~~~l~~~~~~LkpgG~lii~~~~ 271 (348)
|++-. +|.--+ ..+...++..+.++|+|||.+++..+.
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 99632 222111 136788999999999999999998754
No 191
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=9.4e-08 Score=77.98 Aligned_cols=79 Identities=13% Similarity=0.107 Sum_probs=67.5
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~ 236 (348)
.+..++|+|||.|-++....-.....|.|+|+++..++.+++++.+. ..++++.++|+.++.+..+.||.++.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEf-------EvqidlLqcdildle~~~g~fDtavi 120 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEF-------EVQIDLLQCDILDLELKGGIFDTAVI 120 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHh-------hhhhheeeeeccchhccCCeEeeEEe
Confidence 46789999999999997665455568999999999999999988764 45789999999998877789999999
Q ss_pred chhhhc
Q 018970 237 QWCIGH 242 (348)
Q Consensus 237 ~~~l~~ 242 (348)
+..|..
T Consensus 121 NppFGT 126 (185)
T KOG3420|consen 121 NPPFGT 126 (185)
T ss_pred cCCCCc
Confidence 988774
No 192
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=98.49 E-value=7.8e-07 Score=76.20 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=103.6
Q ss_pred cCCCCCcEEEEeccccHHHHHHHHh-CCC-cEEEEcCCHH----------HHHHHHHHhCCCCCCCcCCCcceeEEEcCC
Q 018970 154 RNNQHLVALDCGSGIGRITKNLLIR-YFN-EVDLLEPVSH----------FLDAARESLAPENHMAPDMHKATNFFCVPL 221 (348)
Q Consensus 154 ~~~~~~~VLDvGcG~G~~~~~la~~-~~~-~v~~vD~S~~----------~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~ 221 (348)
+++++.+|+|+--|.|++++.+... ++. .|+++-+.+. +-..+++.. ..|.+.+-.++
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~----------~aN~e~~~~~~ 114 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV----------YANVEVIGKPL 114 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh----------hhhhhhhCCcc
Confidence 4788999999999999999977643 222 4555433322 111121111 12344444454
Q ss_pred CCCCCCCCceeEEeechhhhcC-----ChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHH
Q 018970 222 QDFTPETGRYDVIWVQWCIGHL-----TDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELF 296 (348)
Q Consensus 222 ~~~~~~~~~fD~Ii~~~~l~~~-----~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~ 296 (348)
..+. .....|+++.....|.+ ......++...+++.|||||.+.+.++....+............+...+....
T Consensus 115 ~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~v 193 (238)
T COG4798 115 VALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEV 193 (238)
T ss_pred cccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHH
Confidence 4444 23567777764444432 23456789999999999999999999876554432222222235778899999
Q ss_pred HhcCCeEEEEeecCCCCccceEEEEE
Q 018970 297 SRCGLHIYKSKDQKGLPEELFAVKMY 322 (348)
Q Consensus 297 ~~aGf~~v~~~~~~~~~~~l~~v~~~ 322 (348)
+.+||++.-......+|.+.+.+++|
T Consensus 194 eaaGFkl~aeS~ilaNp~D~~~i~v~ 219 (238)
T COG4798 194 EAAGFKLEAESEILANPDDPRGIWVF 219 (238)
T ss_pred HhhcceeeeeehhhcCCCCCCceeec
Confidence 99999999988888888887777776
No 193
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.47 E-value=6.5e-07 Score=82.77 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=81.2
Q ss_pred CcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-CCceeEEee
Q 018970 159 LVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWV 236 (348)
Q Consensus 159 ~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~Ii~ 236 (348)
.+||-||.|.|..++.+++.. ..+++.+|+++..++.+++.+........ .+++++...|..++-.. ..+||+|++
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~--dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD--DPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC--CCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 599999999999999999665 34899999999999999999876421111 46788888888775432 247999997
Q ss_pred chhhh--cCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970 237 QWCIG--HLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 237 ~~~l~--~~~~~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
-..=. ..+.-.-..|++.|.++|+++|+++..
T Consensus 156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 156 DSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred cCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 43322 101001268999999999999999887
No 194
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.46 E-value=5.1e-06 Score=78.02 Aligned_cols=142 Identities=16% Similarity=0.082 Sum_probs=102.8
Q ss_pred HHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc
Q 018970 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (348)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~ 219 (348)
..+.+.+.+.-. ..++..|||==||||.++....-.|. .++|+|++..|++-|+.|+...++ ....+...
T Consensus 183 P~lAR~mVNLa~---v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i------~~~~~~~~ 252 (347)
T COG1041 183 PRLARAMVNLAR---VKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGI------EDYPVLKV 252 (347)
T ss_pred HHHHHHHHHHhc---cccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCc------CceeEEEe
Confidence 344455444333 67888999999999999998765566 499999999999999999887543 22333444
Q ss_pred -CCCCCCCCCCceeEEeechhhhcCC-------hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHH
Q 018970 220 -PLQDFTPETGRYDVIWVQWCIGHLT-------DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFY 291 (348)
Q Consensus 220 -d~~~~~~~~~~fD~Ii~~~~l~~~~-------~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~ 291 (348)
|+.+++++..++|.|++-....--+ ++=+..+|+.+.++||+||++++..+. .
T Consensus 253 ~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~-------------------~ 313 (347)
T COG1041 253 LDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPR-------------------D 313 (347)
T ss_pred cccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCC-------------------c
Confidence 9999998877899999754333221 122678999999999999999998641 1
Q ss_pred HHHHHHhcCCeEEEEeecC
Q 018970 292 FKELFSRCGLHIYKSKDQK 310 (348)
Q Consensus 292 l~~l~~~aGf~~v~~~~~~ 310 (348)
....+++.||+++..-.+.
T Consensus 314 ~~~~~~~~~f~v~~~~~~~ 332 (347)
T COG1041 314 PRHELEELGFKVLGRFTMR 332 (347)
T ss_pred chhhHhhcCceEEEEEEEe
Confidence 2345677899988755443
No 195
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.45 E-value=3.1e-06 Score=81.59 Aligned_cols=127 Identities=16% Similarity=0.089 Sum_probs=87.7
Q ss_pred CcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--C---------
Q 018970 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--E--------- 227 (348)
Q Consensus 159 ~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~--------- 227 (348)
.+|||++||+|.++..++.. ...|+++|.|+.+++.|++++...++ .++.|...|+.++.. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~~~~~ 280 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI------DNVQIIRMSAEEFTQAMNGVREFNRLK 280 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHhhcccccccc
Confidence 47999999999999987754 55799999999999999999865433 368899998866320 0
Q ss_pred -----CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCe
Q 018970 228 -----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLH 302 (348)
Q Consensus 228 -----~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~ 302 (348)
...||+|++-..-.-+ ...+++.+.+ |+++++++.+.. .+ ...+..+. + ||+
T Consensus 281 ~~~~~~~~~D~v~lDPPR~G~----~~~~l~~l~~---~~~ivyvSC~p~-----------tl---arDl~~L~-~-gY~ 337 (362)
T PRK05031 281 GIDLKSYNFSTIFVDPPRAGL----DDETLKLVQA---YERILYISCNPE-----------TL---CENLETLS-Q-THK 337 (362)
T ss_pred cccccCCCCCEEEECCCCCCC----cHHHHHHHHc---cCCEEEEEeCHH-----------HH---HHHHHHHc-C-CcE
Confidence 1258999986663221 2345555544 788888886421 11 11233333 3 999
Q ss_pred EEEEeecCCCCcc
Q 018970 303 IYKSKDQKGLPEE 315 (348)
Q Consensus 303 ~v~~~~~~~~~~~ 315 (348)
+......--||..
T Consensus 338 l~~v~~~DmFPqT 350 (362)
T PRK05031 338 VERFALFDQFPYT 350 (362)
T ss_pred EEEEEEcccCCCC
Confidence 9888777777754
No 196
>PRK00536 speE spermidine synthase; Provisional
Probab=98.45 E-value=6.5e-07 Score=81.86 Aligned_cols=101 Identities=17% Similarity=0.090 Sum_probs=73.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
+.+.+||-||.|.|..++.+++. ..+|+.+|+++.+++.+++.++...-... .+++++... +.+ ...++||+||
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~~v~mVeID~~Vv~~~k~~lP~~~~~~~--DpRv~l~~~-~~~--~~~~~fDVII 144 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DTHVDFVQADEKILDSFISFFPHFHEVKN--NKNFTHAKQ-LLD--LDIKKYDLII 144 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CCeeEEEECCHHHHHHHHHHCHHHHHhhc--CCCEEEeeh-hhh--ccCCcCCEEE
Confidence 56789999999999999999954 45899999999999999997654211001 234555431 111 1136899999
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+-.. ....+++.+++.|+|||.++...
T Consensus 145 vDs~-------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 145 CLQE-------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EcCC-------CChHHHHHHHHhcCCCcEEEECC
Confidence 7543 12578899999999999998863
No 197
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.44 E-value=1.1e-06 Score=79.91 Aligned_cols=158 Identities=22% Similarity=0.267 Sum_probs=97.3
Q ss_pred hhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccc--cHHHHHHHHhC-CC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCC
Q 018970 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGI--GRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDM 210 (348)
Q Consensus 135 ~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~--G~~~~~la~~~-~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~ 210 (348)
....+.||.+.......+. .-...||||||- -.....++++. +. .|..+|++|-.+..++..+..
T Consensus 49 ar~nR~Fl~RaVr~la~~~---GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~-------- 117 (267)
T PF04672_consen 49 ARANRAFLRRAVRYLAEEA---GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD-------- 117 (267)
T ss_dssp HHHHHHHHHHHHHHHHCTT------EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT--------
T ss_pred HHHHHHHHHHHHHHHHHhc---CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC--------
Confidence 3455677777776554421 223699999994 33455566553 33 899999999999999998876
Q ss_pred Ccc--eeEEEcCCCCCC--CC----CCcee-----EEeechhhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEecccCCCc
Q 018970 211 HKA--TNFFCVPLQDFT--PE----TGRYD-----VIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGF 276 (348)
Q Consensus 211 ~~~--i~~~~~d~~~~~--~~----~~~fD-----~Ii~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~ 276 (348)
..+ ..+..+|+.+-. .. .+-+| .|++..++||++| +++..+++.+.+.|.||.+|+++........
T Consensus 118 ~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p 197 (267)
T PF04672_consen 118 NPRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP 197 (267)
T ss_dssp -TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH
T ss_pred CCCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH
Confidence 234 789999987732 00 12344 6778899999998 8899999999999999999999865432110
Q ss_pred --------ee-cCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970 277 --------VL-DKEDRSITRSDFYFKELFSRCGLHIYK 305 (348)
Q Consensus 277 --------~~-d~~~~~~~~s~~~l~~l~~~aGf~~v~ 305 (348)
.+ ........+|.+++..+|. ||++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 198 ERAEALEAVYAQAGSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp HHHHHHHHHHHHCCS----B-HHHHHHCCT--TSEE-T
T ss_pred HHHHHHHHHHHcCCCCceecCHHHHHHHcC--CCccCC
Confidence 11 1123334479999999998 899887
No 198
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.43 E-value=1.3e-06 Score=75.83 Aligned_cols=109 Identities=21% Similarity=0.186 Sum_probs=76.7
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCC-c---------EEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFN-E---------VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF 224 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~---------v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~ 224 (348)
..++..|||-=||+|.+....+..+.. . +.|+|+++.+++.|++++...++ ...+.+...|+.++
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-----~~~i~~~~~D~~~l 100 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-----EDYIDFIQWDAREL 100 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------CGGEEEEE--GGGG
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc-----CCceEEEecchhhc
Confidence 567789999999999998776654333 2 78999999999999999876554 45689999999999
Q ss_pred CCCCCceeEEeechhhhcC-Ch-hh----HHHHHHHHHHcCCCCcEEEEE
Q 018970 225 TPETGRYDVIWVQWCIGHL-TD-DD----FVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 225 ~~~~~~fD~Ii~~~~l~~~-~~-~d----~~~~l~~~~~~LkpgG~lii~ 268 (348)
+..++++|+|+++..+..- .. .+ ...+++.+.++|++...+++.
T Consensus 101 ~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 101 PLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp GGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred ccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 8656899999998776632 21 12 356788999999994444444
No 199
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.43 E-value=9e-07 Score=81.94 Aligned_cols=136 Identities=19% Similarity=0.203 Sum_probs=91.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CCCCceeE
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDV 233 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~ 233 (348)
.+.+|||+=|=||.++.+.+..+..+|+.||.|..+++.+++++.-.++. ...++|.+.|+.++- ...++||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~----~~~~~~~~~Dvf~~l~~~~~~~~fD~ 198 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD----LDRHRFIQGDVFKFLKRLKKGGRFDL 198 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C----CTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----ccceEEEecCHHHHHHHHhcCCCCCE
Confidence 35799999999999999888777778999999999999999998755431 246889998887632 12368999
Q ss_pred Eeechh-hhc--CC-hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcC--CeEEEEe
Q 018970 234 IWVQWC-IGH--LT-DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCG--LHIYKSK 307 (348)
Q Consensus 234 Ii~~~~-l~~--~~-~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aG--f~~v~~~ 307 (348)
||+-.. |.. .. ..++..+++.+.++|+|||.|++..+... .+.+.+.+++.+++ +++++..
T Consensus 199 IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~-------------i~~~~l~~~~~~~a~~~~~~~~~ 265 (286)
T PF10672_consen 199 IILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH-------------ISPDFLLEAVAEAAREVEFIERL 265 (286)
T ss_dssp EEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT-------------S-HHHHHHHHHHHHHHCEEEEEE
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc-------------cCHHHHHHHHHHhCccceEeeee
Confidence 997321 111 00 13677899999999999999887654321 34556667666654 5555544
Q ss_pred ec
Q 018970 308 DQ 309 (348)
Q Consensus 308 ~~ 309 (348)
.+
T Consensus 266 ~~ 267 (286)
T PF10672_consen 266 GQ 267 (286)
T ss_dssp E-
T ss_pred cc
Confidence 33
No 200
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.39 E-value=2.5e-07 Score=80.48 Aligned_cols=106 Identities=13% Similarity=0.146 Sum_probs=77.0
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCcee
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD 232 (348)
++.+|||+=||+|.++...+.++...|+.||.++..+...++++...+. ...+.+.+.|...+- .....||
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~-----~~~~~v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL-----EDKIRVIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT------GGGEEEEESSHHHHHHHHHHCTS-EE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC-----CcceeeeccCHHHHHHhhcccCCCce
Confidence 5689999999999999999999999999999999999999999876443 335778888754321 1347899
Q ss_pred EEeechhhhcCChhhHHHHHHHHH--HcCCCCcEEEEEe
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAK--VGLKPGGFFVLKE 269 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~--~~LkpgG~lii~~ 269 (348)
+|++-.....-. ....++..+. .+|+++|++++-.
T Consensus 117 iIflDPPY~~~~--~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 117 IIFLDPPYAKGL--YYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp EEEE--STTSCH--HHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred EEEECCCcccch--HHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 999987766422 1367777776 7999999888865
No 201
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.39 E-value=1e-06 Score=76.53 Aligned_cols=123 Identities=20% Similarity=0.199 Sum_probs=88.5
Q ss_pred cEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeech
Q 018970 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (348)
Q Consensus 160 ~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~ 238 (348)
+++|||+|.|.-+..++-..++ +++.+|.+.+-+...+......++ .|+++.+..+++ .....+||+|++..
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L------~nv~v~~~R~E~-~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL------SNVEVINGRAEE-PEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-------SSEEEEES-HHH-TTTTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC------CCEEEEEeeecc-cccCCCccEEEeeh
Confidence 7999999999999988877776 799999999988888777665544 478999998888 33347899999977
Q ss_pred hhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK 307 (348)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~ 307 (348)
+- .+..++.-+...|++||.+++.-.... .-..+.....++..|.+.....
T Consensus 124 v~------~l~~l~~~~~~~l~~~G~~l~~KG~~~------------~~El~~~~~~~~~~~~~~~~v~ 174 (184)
T PF02527_consen 124 VA------PLDKLLELARPLLKPGGRLLAYKGPDA------------EEELEEAKKAWKKLGLKVLSVP 174 (184)
T ss_dssp SS------SHHHHHHHHGGGEEEEEEEEEEESS--------------HHHHHTHHHHHHCCCEEEEEEE
T ss_pred hc------CHHHHHHHHHHhcCCCCEEEEEcCCCh------------HHHHHHHHhHHHHhCCEEeeec
Confidence 63 356888999999999999988752110 0112234555666666665543
No 202
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.37 E-value=1.1e-05 Score=77.58 Aligned_cols=128 Identities=15% Similarity=0.069 Sum_probs=86.8
Q ss_pred CcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-----------
Q 018970 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE----------- 227 (348)
Q Consensus 159 ~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~----------- 227 (348)
.+|||++||+|.++..++.. ...|+++|+|+.+++.|++++...++ .++.|.+.|+.++...
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~~~~~~~ 271 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNI------DNVQIIRMSAEEFTQAMNGVREFRRLK 271 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEEcCHHHHHHHHhhcccccccc
Confidence 47999999999999987755 45799999999999999999866433 3688999988763211
Q ss_pred -----CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCe
Q 018970 228 -----TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLH 302 (348)
Q Consensus 228 -----~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~ 302 (348)
...||+|++-..=.- -...+++.+.+ |+++++++.+.. .+.+ ++..+. .||+
T Consensus 272 ~~~~~~~~~d~v~lDPPR~G----~~~~~l~~l~~---~~~ivYvsC~p~-----------tlaR---Dl~~L~--~~Y~ 328 (353)
T TIGR02143 272 GIDLKSYNCSTIFVDPPRAG----LDPDTCKLVQA---YERILYISCNPE-----------TLKA---NLEQLS--ETHR 328 (353)
T ss_pred ccccccCCCCEEEECCCCCC----CcHHHHHHHHc---CCcEEEEEcCHH-----------HHHH---HHHHHh--cCcE
Confidence 013799998665211 12345555544 788998886421 1112 233333 3599
Q ss_pred EEEEeecCCCCccc
Q 018970 303 IYKSKDQKGLPEEL 316 (348)
Q Consensus 303 ~v~~~~~~~~~~~l 316 (348)
+......--||...
T Consensus 329 l~~v~~~DmFP~T~ 342 (353)
T TIGR02143 329 VERFALFDQFPYTH 342 (353)
T ss_pred EEEEEEcccCCCCC
Confidence 88888777777643
No 203
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.37 E-value=1.1e-06 Score=88.32 Aligned_cols=107 Identities=16% Similarity=0.054 Sum_probs=81.7
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCceeE
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~ 233 (348)
....+||||||.|.++..++...++ .+.|+|++...+..+.++....++ .|+.+.+.|+..+. ++++++|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l------~N~~~~~~~~~~~~~~~~~~sv~~ 420 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI------TNFLLFPNNLDLILNDLPNNSLDG 420 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC------CeEEEEcCCHHHHHHhcCcccccE
Confidence 4567999999999999999998887 899999999999888777655443 46667777664322 45678999
Q ss_pred EeechhhhcCChhh------HHHHHHHHHHcCCCCcEEEEEe
Q 018970 234 IWVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 234 Ii~~~~l~~~~~~d------~~~~l~~~~~~LkpgG~lii~~ 269 (348)
|++++.=-+..... -..+++.+.++|||||.|.+..
T Consensus 421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 421 IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 99866533322111 2579999999999999999876
No 204
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.36 E-value=1.1e-06 Score=85.07 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=76.8
Q ss_pred CCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970 158 HLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (348)
Q Consensus 158 ~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~ 236 (348)
+.+|||++||+|.++..++.... ..|+++|+++.+++.+++++...++ .++.+...|+..+....+.||+|++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~------~~~~v~~~Da~~~l~~~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL------ENEKVFNKDANALLHEERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CceEEEhhhHHHHHhhcCCCCEEEE
Confidence 35899999999999999876543 4799999999999999998865433 2456888888664321357999998
Q ss_pred chhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
.. + . ....++..+.+.+++||+++++
T Consensus 132 DP-~---G--s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 132 DP-F---G--SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CC-C---C--CcHHHHHHHHHHhcCCCEEEEE
Confidence 64 2 1 3457888877889999999997
No 205
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=3.9e-06 Score=72.92 Aligned_cols=107 Identities=19% Similarity=0.192 Sum_probs=77.3
Q ss_pred CCCCCcEEEEeccccHHHHHHHHh-CCC--cEEEEcCCHHHHHHHHHHhCCCCCCCc--C--CCcceeEEEcCCCCCCCC
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIR-YFN--EVDLLEPVSHFLDAARESLAPENHMAP--D--MHKATNFFCVPLQDFTPE 227 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~-~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~--~--~~~~i~~~~~d~~~~~~~ 227 (348)
+.++.+.||+|+|+|+++..++.. +.. .+.|+|.-++.++.+++++....-.+. . -..+..+..+|-...-.+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 457899999999999999877633 222 349999999999999998765321000 0 024567778887776666
Q ss_pred CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
..+||.|++...-. ...+++...|+|||.++|--
T Consensus 160 ~a~YDaIhvGAaa~--------~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 160 QAPYDAIHVGAAAS--------ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cCCcceEEEccCcc--------ccHHHHHHhhccCCeEEEee
Confidence 68999999874432 45567788899999998853
No 206
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.28 E-value=1.3e-06 Score=76.83 Aligned_cols=100 Identities=18% Similarity=0.234 Sum_probs=71.2
Q ss_pred CCCCCcEEEEeccccHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
..++..|||+-||.|.++..++.. ....|+++|++|..++.+++++...++ ...+.....|..++.. .+.||-
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv-----~~~i~~~~~D~~~~~~-~~~~dr 172 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV-----ENRIEVINGDAREFLP-EGKFDR 172 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT------TTTEEEEES-GGG----TT-EEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC-----CCeEEEEcCCHHHhcC-ccccCE
Confidence 456789999999999999999873 334799999999999999998876544 4568889999988876 589999
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~li 266 (348)
|+++..-. ...++..+.+++++||++.
T Consensus 173 vim~lp~~------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 173 VIMNLPES------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEE--TSS------GGGGHHHHHHHEEEEEEEE
T ss_pred EEECChHH------HHHHHHHHHHHhcCCcEEE
Confidence 99876522 2258888999999999874
No 207
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.28 E-value=1.3e-06 Score=79.61 Aligned_cols=112 Identities=21% Similarity=0.209 Sum_probs=77.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCC-cee
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETG-RYD 232 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~-~fD 232 (348)
+++.+||-||.|.|..+..+++.. ..+|+++|+++.+++.|++.+...... --..+++++..|...+- ...+ +||
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEESTHHHHHHTSSST-EE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEEhhhHHHHHhccCCccc
Confidence 467899999999999999988544 348999999999999999976531100 01357888888886643 2224 899
Q ss_pred EEeechhhhcCChh--hHHHHHHHHHHcCCCCcEEEEEe
Q 018970 233 VIWVQWCIGHLTDD--DFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~--d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+|++-..-...+.. --..+++.+.+.|+|||++++..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 99973221111111 13589999999999999998865
No 208
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.28 E-value=8.7e-07 Score=80.45 Aligned_cols=97 Identities=19% Similarity=0.173 Sum_probs=77.5
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcce-eEEEcCCCCCCCCCCceeEE
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKAT-NFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i-~~~~~d~~~~~~~~~~fD~I 234 (348)
..+..++|+|||.|..+.. .-...+.+.|.+...+..+++. +. ....+|+..+++.+.+||.+
T Consensus 44 ~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~-------------~~~~~~~ad~l~~p~~~~s~d~~ 107 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS-------------GGDNVCRADALKLPFREESFDAA 107 (293)
T ss_pred CCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC-------------CCceeehhhhhcCCCCCCccccc
Confidence 4467899999999966441 1112589999998888877643 22 46778999999888999999
Q ss_pred eechhhhcCCh-hhHHHHHHHHHHcCCCCcEEEEE
Q 018970 235 WVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 235 i~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
++..++||+.. .....+++++.++|+|||...+.
T Consensus 108 lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 108 LSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 99999999976 45678999999999999987774
No 209
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.28 E-value=5.3e-06 Score=82.17 Aligned_cols=109 Identities=16% Similarity=0.137 Sum_probs=81.9
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-CCCCce
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-PETGRY 231 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~f 231 (348)
+.++.+|||++||+|.-+.++++.... .|+++|+++..++.+++++.+.|+ .++.+...|...+. ...+.|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~------~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV------SNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCchhhhhhhchhhc
Confidence 568889999999999999999876532 799999999999999999987654 45677777876653 223679
Q ss_pred eEEee----c--hhhhcCC-------hhh-------HHHHHHHHHHcCCCCcEEEEEe
Q 018970 232 DVIWV----Q--WCIGHLT-------DDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 232 D~Ii~----~--~~l~~~~-------~~d-------~~~~l~~~~~~LkpgG~lii~~ 269 (348)
|.|++ + .++..-+ .++ ...+|..+.++|||||.|+.++
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 99993 2 2222211 111 2578999999999999997764
No 210
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.27 E-value=1.2e-05 Score=71.14 Aligned_cols=143 Identities=20% Similarity=0.163 Sum_probs=98.4
Q ss_pred CCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (348)
Q Consensus 158 ~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~ 236 (348)
+.+++|||+|.|.-+..++-..++ +|+.+|...+-+...++...+.++ .|+++++.-++++......||+|++
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L------~nv~i~~~RaE~~~~~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL------ENVEIVHGRAEEFGQEKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC------CCeEEehhhHhhcccccccCcEEEe
Confidence 589999999999999988755554 799999999888888777666544 5789999999988743222999998
Q ss_pred chhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCCCCccc
Q 018970 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGLPEEL 316 (348)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~~~~~l 316 (348)
..+- ++..++.-+..++|+||.+++.-.....+ -..+.++.....|+.+...... ..|...
T Consensus 142 RAva------~L~~l~e~~~pllk~~g~~~~~k~~~~~~------------e~~e~~~a~~~~~~~~~~~~~~-~~p~~~ 202 (215)
T COG0357 142 RAVA------SLNVLLELCLPLLKVGGGFLAYKGLAGKD------------ELPEAEKAILPLGGQVEKVFSL-TVPELD 202 (215)
T ss_pred ehcc------chHHHHHHHHHhcccCCcchhhhHHhhhh------------hHHHHHHHHHhhcCcEEEEEEe-ecCCCC
Confidence 7652 45577888999999999876543211101 1234666777778886665433 233333
Q ss_pred eEEEEEEEe
Q 018970 317 FAVKMYALT 325 (348)
Q Consensus 317 ~~v~~~~l~ 325 (348)
.+..+..++
T Consensus 203 ~~r~l~ii~ 211 (215)
T COG0357 203 GERHLVIIR 211 (215)
T ss_pred CceEEEEEe
Confidence 344444443
No 211
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.24 E-value=9.5e-06 Score=71.75 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=88.6
Q ss_pred EEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CCCCCCceeEEeech
Q 018970 161 ALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGRYDVIWVQW 238 (348)
Q Consensus 161 VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~fD~Ii~~~ 238 (348)
|.||||-.|++..+|++++.. .++++|+++.-++.|++++...++ ..++++..+|-.+ ++.. ...|+|++.+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l-----~~~i~~rlgdGL~~l~~~-e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL-----EDRIEVRLGDGLEVLKPG-EDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT------TTTEEEEE-SGGGG--GG-G---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----cccEEEEECCcccccCCC-CCCCEEEEec
Confidence 689999999999999988765 799999999999999999987665 4679999998544 4422 2379888766
Q ss_pred hhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecC
Q 018970 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQK 310 (348)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~ 310 (348)
+=.. -+..+|.+....++....|++..+. ....+++++.+.||.++......
T Consensus 75 MGG~----lI~~ILe~~~~~~~~~~~lILqP~~----------------~~~~LR~~L~~~gf~I~~E~lv~ 126 (205)
T PF04816_consen 75 MGGE----LIIEILEAGPEKLSSAKRLILQPNT----------------HAYELRRWLYENGFEIIDEDLVE 126 (205)
T ss_dssp E-HH----HHHHHHHHTGGGGTT--EEEEEESS-----------------HHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCHH----HHHHHHHhhHHHhccCCeEEEeCCC----------------ChHHHHHHHHHCCCEEEEeEEEe
Confidence 5332 4667888887777766677776532 34679999999999999866543
No 212
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=98.24 E-value=1.4e-05 Score=73.44 Aligned_cols=149 Identities=19% Similarity=0.189 Sum_probs=97.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHh---CCC--------------------CCCCcCC--
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL---APE--------------------NHMAPDM-- 210 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~---~~~--------------------~~~~~~~-- 210 (348)
..+.+||-=|||.|+++..|+..++. +-|-+.|--|+-...=.+ ... .+-+..+
T Consensus 149 r~ki~iLvPGaGlGRLa~dla~~G~~-~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369)
T KOG2798|consen 149 RTKIRILVPGAGLGRLAYDLACLGFK-CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369)
T ss_pred ccCceEEecCCCchhHHHHHHHhccc-ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence 44668999999999999999988886 788888888875543221 000 0000000
Q ss_pred ---------CcceeEEEcCCCCCCCC---CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCce-
Q 018970 211 ---------HKATNFFCVPLQDFTPE---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFV- 277 (348)
Q Consensus 211 ---------~~~i~~~~~d~~~~~~~---~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~- 277 (348)
........+|+.+.-.. .+.||+|+.++.+.... ++..+++.+..+|||||+.+-..+..-+-..
T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~--NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~ 305 (369)
T KOG2798|consen 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAH--NILEYIDTIYKILKPGGVWINLGPLLYHFEDT 305 (369)
T ss_pred ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechH--HHHHHHHHHHHhccCCcEEEeccceeeeccCC
Confidence 01112233454442211 24799999998777655 8999999999999999998876543311000
Q ss_pred ec-CCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970 278 LD-KEDRSITRSDFYFKELFSRCGLHIYKSK 307 (348)
Q Consensus 278 ~d-~~~~~~~~s~~~l~~l~~~aGf~~v~~~ 307 (348)
.+ ....++-++.+++..+.+..||+++..+
T Consensus 306 ~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 306 HGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 00 1133455799999999999999998866
No 213
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.22 E-value=2.5e-05 Score=63.50 Aligned_cols=101 Identities=22% Similarity=0.231 Sum_probs=70.2
Q ss_pred EEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcc-eeEEEcCCCC--CCCCC-CceeEE
Q 018970 161 ALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKA-TNFFCVPLQD--FTPET-GRYDVI 234 (348)
Q Consensus 161 VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~-i~~~~~d~~~--~~~~~-~~fD~I 234 (348)
++|+|||+|... .+..... ..++++|+++.++..++...... ... +.+...+... ++... ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA-------GLGLVDFVVADALGGVLPFEDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc-------CCCceEEEEeccccCCCCCCCCCceeEE
Confidence 999999999976 3332222 25888999999999855443211 111 5677777665 55554 489999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~ 272 (348)
.+...+++.. ....+..+.+.|+|+|.+++.....
T Consensus 124 ~~~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 124 ISLLVLHLLP---PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred eeeeehhcCC---HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 4444444433 6789999999999999999987543
No 214
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=6.4e-06 Score=74.85 Aligned_cols=79 Identities=18% Similarity=0.140 Sum_probs=66.2
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCC-ceeE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG-RYDV 233 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~fD~ 233 (348)
+.++.+|||||+|.|.+|..|+++... |+++|+++.+++..++.+.. ..+++++.+|+..++++.- .++.
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~-v~aiEiD~~l~~~L~~~~~~--------~~n~~vi~~DaLk~d~~~l~~~~~ 98 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAAR-VTAIEIDRRLAEVLKERFAP--------YDNLTVINGDALKFDFPSLAQPYK 98 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcCe-EEEEEeCHHHHHHHHHhccc--------ccceEEEeCchhcCcchhhcCCCE
Confidence 566789999999999999999988775 99999999999999998763 4689999999998886622 5788
Q ss_pred Eeechhhhc
Q 018970 234 IWVQWCIGH 242 (348)
Q Consensus 234 Ii~~~~l~~ 242 (348)
|+++-..+-
T Consensus 99 vVaNlPY~I 107 (259)
T COG0030 99 VVANLPYNI 107 (259)
T ss_pred EEEcCCCcc
Confidence 888766543
No 215
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.17 E-value=5e-05 Score=71.82 Aligned_cols=143 Identities=16% Similarity=0.165 Sum_probs=106.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
.++.+|||.=||.|.++..++..+...|+++|++|..++.+++++.-+++ ...+..+++|..++....+.+|-|+
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v-----~~~v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV-----EGRVEPILGDAREVAPELGVADRII 261 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc-----cceeeEEeccHHHhhhccccCCEEE
Confidence 45789999999999999999987776799999999999999999876554 3448899999998876657899999
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCC--eEEEEeecCCCC
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGL--HIYKSKDQKGLP 313 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf--~~v~~~~~~~~~ 313 (348)
++..- +-..++..+.+.+++||.+.+.+....... ..+....+.+.....|+ .+.....-..+.
T Consensus 262 m~~p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~--------~~~~~~~i~~~~~~~~~~~~v~~~r~Vksys 327 (341)
T COG2520 262 MGLPK------SAHEFLPLALELLKDGGIIHYYEFVPEDDI--------EERPEKRIKSAARKGGYKVEVLKVRRVKSYS 327 (341)
T ss_pred eCCCC------cchhhHHHHHHHhhcCcEEEEEeccchhhc--------ccchHHHHHHHHhhccCcceEEEEEEecccC
Confidence 87663 234688888999999999999886543211 11244557777777774 444455555554
Q ss_pred ccce
Q 018970 314 EELF 317 (348)
Q Consensus 314 ~~l~ 317 (348)
+..|
T Consensus 328 P~v~ 331 (341)
T COG2520 328 PGVY 331 (341)
T ss_pred CCee
Confidence 4433
No 216
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.16 E-value=9.2e-06 Score=73.26 Aligned_cols=81 Identities=16% Similarity=0.098 Sum_probs=67.2
Q ss_pred ccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970 153 ARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (348)
Q Consensus 153 ~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (348)
..+.++..|||||.|||.++..|++.+.. |.++|+++.|+...++++..... .....+..+|+...+.+ .||
T Consensus 54 a~~k~tD~VLEvGPGTGnLT~~lLe~~kk-VvA~E~Dprmvael~krv~gtp~-----~~kLqV~~gD~lK~d~P--~fd 125 (315)
T KOG0820|consen 54 ADLKPTDVVLEVGPGTGNLTVKLLEAGKK-VVAVEIDPRMVAELEKRVQGTPK-----SGKLQVLHGDFLKTDLP--RFD 125 (315)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCe-EEEEecCcHHHHHHHHHhcCCCc-----cceeeEEecccccCCCc--ccc
Confidence 34788899999999999999999988775 99999999999999999876432 45788899999877654 699
Q ss_pred EEeechhhh
Q 018970 233 VIWVQWCIG 241 (348)
Q Consensus 233 ~Ii~~~~l~ 241 (348)
++|++....
T Consensus 126 ~cVsNlPyq 134 (315)
T KOG0820|consen 126 GCVSNLPYQ 134 (315)
T ss_pred eeeccCCcc
Confidence 999865443
No 217
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.10 E-value=2.6e-06 Score=70.39 Aligned_cols=83 Identities=20% Similarity=0.199 Sum_probs=60.9
Q ss_pred CCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCC---c----------eecCCCCceecCH
Q 018970 223 DFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSG---F----------VLDKEDRSITRSD 289 (348)
Q Consensus 223 ~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~---~----------~~d~~~~~~~~s~ 289 (348)
...+.+++.|+|++..+++|++-++...+++.|++.|||||+|-|+-+..... + .-|.-.+.+..+.
T Consensus 40 e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v~t~ 119 (185)
T COG4627 40 ESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIVKTM 119 (185)
T ss_pred hccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHHHHH
Confidence 34466789999999999999998889999999999999999999975433211 0 0111122333466
Q ss_pred HHHHHHHHhcCCeEEE
Q 018970 290 FYFKELFSRCGLHIYK 305 (348)
Q Consensus 290 ~~l~~l~~~aGf~~v~ 305 (348)
..+..++.++||.+--
T Consensus 120 r~m~n~~m~~~~~~kl 135 (185)
T COG4627 120 RMMFNGFMDAGFVVKL 135 (185)
T ss_pred HHHHHHHHhhhheehh
Confidence 6778888899988543
No 218
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.10 E-value=2.9e-05 Score=68.62 Aligned_cols=123 Identities=20% Similarity=0.276 Sum_probs=90.7
Q ss_pred HHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEE
Q 018970 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF 217 (348)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~ 217 (348)
.++..++.. -.+.++||||.=||+-+..++...+. +|+.+|+++...+.+.+..+..|. ...+++.
T Consensus 63 ~fl~~li~~-------~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----~~KI~~i 130 (237)
T KOG1663|consen 63 QFLQMLIRL-------LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----DHKITFI 130 (237)
T ss_pred HHHHHHHHH-------hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----cceeeee
Confidence 455555542 34579999999999999888877665 899999999999999888776554 5678898
Q ss_pred EcCCCCC-C-----CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC
Q 018970 218 CVPLQDF-T-----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK 280 (348)
Q Consensus 218 ~~d~~~~-~-----~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~ 280 (348)
.++..+- + .+.++||+++ +.|..+ +...++.++.+++|+||+|++-.... .+...++
T Consensus 131 ~g~a~esLd~l~~~~~~~tfDfaF----vDadK~-nY~~y~e~~l~Llr~GGvi~~DNvl~-~G~v~~p 193 (237)
T KOG1663|consen 131 EGPALESLDELLADGESGTFDFAF----VDADKD-NYSNYYERLLRLLRVGGVIVVDNVLW-PGVVADP 193 (237)
T ss_pred ecchhhhHHHHHhcCCCCceeEEE----EccchH-HHHHHHHHHHhhcccccEEEEecccc-CCcccCc
Confidence 8866542 1 2357999998 444443 45689999999999999987754333 3343333
No 219
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.07 E-value=6.8e-06 Score=76.49 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=60.4
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCC-
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETG- 229 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~- 229 (348)
+.++..+||++||.|..+..++.... ..|+|+|.++.|++.|++++.. ..++.++..|+.++. .+.+
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--------~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--------FGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--------CCcEEEEeCCHHHHHHHHHcCC
Confidence 46778999999999999999998864 3799999999999999988743 246889998888754 1112
Q ss_pred -ceeEEeec
Q 018970 230 -RYDVIWVQ 237 (348)
Q Consensus 230 -~fD~Ii~~ 237 (348)
++|.|++.
T Consensus 89 ~~vDgIl~D 97 (296)
T PRK00050 89 GKVDGILLD 97 (296)
T ss_pred CccCEEEEC
Confidence 79999864
No 220
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.05 E-value=2.1e-05 Score=67.85 Aligned_cols=108 Identities=16% Similarity=0.082 Sum_probs=80.9
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--C-CCCcee
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--P-ETGRYD 232 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~-~~~~fD 232 (348)
-.+.++||+=+|+|.++...+.++...++.+|.+...+...++++...++ ..+..++..|...+. . ..+.||
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~-----~~~~~~~~~da~~~L~~~~~~~~FD 116 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL-----EGEARVLRNDALRALKQLGTREPFD 116 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----ccceEEEeecHHHHHHhcCCCCccc
Confidence 35689999999999999999999999999999999999999999876543 356777777776431 1 123599
Q ss_pred EEeechhhhcCChhhHHHHHHH--HHHcCCCCcEEEEEe
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKR--AKVGLKPGGFFVLKE 269 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~--~~~~LkpgG~lii~~ 269 (348)
+|++-..++.-- -+....+.. -..+|+|+|.+++-.
T Consensus 117 lVflDPPy~~~l-~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 117 LVFLDPPYAKGL-LDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred EEEeCCCCccch-hhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 999988877211 111223333 457899999999865
No 221
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=7e-05 Score=66.63 Aligned_cols=139 Identities=20% Similarity=0.140 Sum_probs=95.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC--CCceeE
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDV 233 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fD~ 233 (348)
.++..|||+|+.||.++..+++++...|+++|..-.++..--+.- ...+.+...++..+... .+..|+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d----------~rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND----------PRVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC----------CcEEEEecCChhhCCHHHcccCCCe
Confidence 456789999999999999999999999999999887775432221 22345555566655422 136789
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe---------cccCCCceecCCCCceecCHHHHHHHHHhcCCeEE
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE---------NIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIY 304 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~---------~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v 304 (348)
|++--+|. .+..+|..+..+|+|+|.++..- .....+.+.++.. ...-...+.+.+++.||.+.
T Consensus 148 ~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~--~~~v~~~i~~~~~~~g~~~~ 220 (245)
T COG1189 148 IVIDVSFI-----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKL--HAEVLSKIENFAKELGFQVK 220 (245)
T ss_pred EEEEeehh-----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcch--HHHHHHHHHHHHhhcCcEEe
Confidence 99877666 46689999999999999877642 1111222222211 11344567888888999998
Q ss_pred EEeecCC
Q 018970 305 KSKDQKG 311 (348)
Q Consensus 305 ~~~~~~~ 311 (348)
.....+-
T Consensus 221 gl~~Spi 227 (245)
T COG1189 221 GLIKSPI 227 (245)
T ss_pred eeEccCc
Confidence 8765543
No 222
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.02 E-value=1.1e-05 Score=77.66 Aligned_cols=99 Identities=11% Similarity=0.060 Sum_probs=79.0
Q ss_pred CCcEEEEeccccHHHHHHHHh--CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-CCCceeEE
Q 018970 158 HLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRYDVI 234 (348)
Q Consensus 158 ~~~VLDvGcG~G~~~~~la~~--~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~fD~I 234 (348)
+.+|||+-||+|..+..++.+ +...|+++|+++..++.+++++...+. .++.+.+.|+..+.. ....||+|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------~~~~v~~~Da~~~l~~~~~~fDvI 118 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------ENIEVPNEDAANVLRYRNRKFHVI 118 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEchhHHHHHHHhCCCCCEE
Confidence 358999999999999999987 556899999999999999999865322 246788888776532 12579999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
.+-. +. ....++..+.+.+++||+|+++
T Consensus 119 dlDP-fG-----s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 119 DIDP-FG-----TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred EeCC-CC-----CcHHHHHHHHHhcccCCEEEEE
Confidence 9855 32 3357999999999999999997
No 223
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.97 E-value=9.9e-05 Score=72.44 Aligned_cols=132 Identities=21% Similarity=0.181 Sum_probs=95.3
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCC---Cce
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GRY 231 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~f 231 (348)
..++.++||+=||.|.++..|+.+ ..+|+|+|+++.+++.|+++++..++ .|++|...+.+++.... ..+
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i------~N~~f~~~~ae~~~~~~~~~~~~ 363 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGI------DNVEFIAGDAEEFTPAWWEGYKP 363 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEeCCHHHHhhhccccCCC
Confidence 356678999999999999999844 45699999999999999999987654 45899999998876432 478
Q ss_pred eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCC
Q 018970 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKG 311 (348)
Q Consensus 232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~ 311 (348)
|+|+....=.-+. ..+++.+.+ ++|-.+++|+.|.. |...=...+...|+++.+.....-
T Consensus 364 d~VvvDPPR~G~~----~~~lk~l~~-~~p~~IvYVSCNP~---------------TlaRDl~~L~~~gy~i~~v~~~Dm 423 (432)
T COG2265 364 DVVVVDPPRAGAD----REVLKQLAK-LKPKRIVYVSCNPA---------------TLARDLAILASTGYEIERVQPFDM 423 (432)
T ss_pred CEEEECCCCCCCC----HHHHHHHHh-cCCCcEEEEeCCHH---------------HHHHHHHHHHhCCeEEEEEEEecc
Confidence 9999754422222 256666655 58888999997542 122234567778888766554444
Q ss_pred CC
Q 018970 312 LP 313 (348)
Q Consensus 312 ~~ 313 (348)
||
T Consensus 424 FP 425 (432)
T COG2265 424 FP 425 (432)
T ss_pred CC
Confidence 44
No 224
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.93 E-value=3.2e-05 Score=72.89 Aligned_cols=162 Identities=15% Similarity=0.083 Sum_probs=91.3
Q ss_pred CCCCCcEEEEeccccHHHHHHHHh--------CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIR--------YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP 226 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~--------~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~ 226 (348)
..++.+|||-.||+|.+...+... ....++|+|+++.++..|+-++.-.+.. ..+..+...|....+.
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~----~~~~~i~~~d~l~~~~ 119 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID----NSNINIIQGDSLENDK 119 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH----CBGCEEEES-TTTSHS
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc----cccccccccccccccc
Confidence 566778999999999998887753 2237999999999999888654221110 1223466777554332
Q ss_pred C--CCceeEEeechhhhcC--Ch-----------------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCce
Q 018970 227 E--TGRYDVIWVQWCIGHL--TD-----------------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSI 285 (348)
Q Consensus 227 ~--~~~fD~Ii~~~~l~~~--~~-----------------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~ 285 (348)
. ...||+|+++..+... .. ..-..++..+.+.|++||.+.+.-+.. +.+. .
T Consensus 120 ~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~---~L~~--~--- 191 (311)
T PF02384_consen 120 FIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG---FLFS--S--- 191 (311)
T ss_dssp CTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH---HHHG--S---
T ss_pred cccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch---hhhc--c---
Confidence 2 3689999998766644 10 011258899999999999876654211 1001 0
Q ss_pred ecCHHHHHHHH-HhcCCeEEEEeecCCCCccceEEEEEEEeecCC
Q 018970 286 TRSDFYFKELF-SRCGLHIYKSKDQKGLPEELFAVKMYALTAEMP 329 (348)
Q Consensus 286 ~~s~~~l~~l~-~~aGf~~v~~~~~~~~~~~l~~v~~~~l~~~~~ 329 (348)
.....+++.| +....+.+-.....-|.....+..+..+....+
T Consensus 192 -~~~~~iR~~ll~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~~ 235 (311)
T PF02384_consen 192 -SSEKKIRKYLLENGYIEAVISLPSNLFKPTGVPTSILILNKKKP 235 (311)
T ss_dssp -THHHHHHHHHHHHEEEEEEEE--TTSSSSSSS-EEEEEEEESSS
T ss_pred -chHHHHHHHHHhhchhhEEeecccceecccCcCceEEEEeeccc
Confidence 1124566554 444444433333334555555666677765543
No 225
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=2.2e-05 Score=65.51 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=84.4
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-CC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC--CCCCCce
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGRY 231 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~-~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~f 231 (348)
-.+.+|||+|.|--.++-.+.... +. .|...|-+...++..++......... ..++....-+.... ..+...|
T Consensus 28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~---~tsc~vlrw~~~~aqsq~eq~tF 104 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASS---LTSCCVLRWLIWGAQSQQEQHTF 104 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccc---cceehhhHHHHhhhHHHHhhCcc
Confidence 445789999999655544443333 32 89999999999988877654310000 01111111111111 1223589
Q ss_pred eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKS 306 (348)
Q Consensus 232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~ 306 (348)
|.|++..++-. ++.-..+++.+...|+|.|.-++..+... .|.+.+.+.....||.+...
T Consensus 105 DiIlaADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsPRRg-------------~sL~kF~de~~~~gf~v~l~ 164 (201)
T KOG3201|consen 105 DIILAADCLFF--DEHHESLVDTIKSLLRPSGRALLFSPRRG-------------QSLQKFLDEVGTVGFTVCLE 164 (201)
T ss_pred cEEEeccchhH--HHHHHHHHHHHHHHhCcccceeEecCccc-------------chHHHHHHHHHhceeEEEec
Confidence 99999888765 33567889999999999998666543321 46677888888888887653
No 226
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.90 E-value=6.9e-05 Score=75.86 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=54.4
Q ss_pred CCCcEEEEeccccHHHHHHHHhCC---------CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC---
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYF---------NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--- 224 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~---------~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~--- 224 (348)
...+|||.|||+|.++..++.... ..++++|+++..+..++.++...+. ..+.+.+.|....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~------~~~~i~~~d~l~~~~~ 104 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL------LEINVINFNSLSYVLL 104 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC------CCceeeeccccccccc
Confidence 456899999999999988876532 2689999999999999988755321 1123333332211
Q ss_pred --CCCCCceeEEeechhhhc
Q 018970 225 --TPETGRYDVIWVQWCIGH 242 (348)
Q Consensus 225 --~~~~~~fD~Ii~~~~l~~ 242 (348)
....+.||+|+.+....-
T Consensus 105 ~~~~~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 105 NIESYLDLFDIVITNPPYGR 124 (524)
T ss_pred ccccccCcccEEEeCCCccc
Confidence 111257999999876654
No 227
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.87 E-value=7.9e-05 Score=72.63 Aligned_cols=104 Identities=16% Similarity=0.297 Sum_probs=87.1
Q ss_pred CcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeech
Q 018970 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (348)
Q Consensus 159 ~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~ 238 (348)
.++|-+|||.-.++..+.+.++..|+-+|+|+-.++.+....... ..-+.+...|+..+.+++++||+|+.-+
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~-------~~~~~~~~~d~~~l~fedESFdiVIdkG 122 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE-------RPEMQMVEMDMDQLVFEDESFDIVIDKG 122 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC-------CcceEEEEecchhccCCCcceeEEEecC
Confidence 389999999999999999889989999999999999887765332 3458889999999999999999999999
Q ss_pred hhhcCChhh--------HHHHHHHHHHcCCCCcEEEEEe
Q 018970 239 CIGHLTDDD--------FVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 239 ~l~~~~~~d--------~~~~l~~~~~~LkpgG~lii~~ 269 (348)
.++++-.++ ....+.++.++|+|||+++...
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 998774322 2356889999999999877654
No 228
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.87 E-value=6.8e-05 Score=65.48 Aligned_cols=105 Identities=19% Similarity=0.169 Sum_probs=79.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCceeE
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDV 233 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~ 233 (348)
.++.+||+||-|-|.....+-++-+.+-+.++..|..+...++..-.+ ..++....+-.++.. .+++.||-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-------k~nViil~g~WeDvl~~L~d~~FDG 172 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-------KENVIILEGRWEDVLNTLPDKHFDG 172 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-------ccceEEEecchHhhhccccccCcce
Confidence 567899999999999988776666667899999999999988765432 346666666555532 44678999
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
|+--..-.+- +|+..+.+.+.++|||+|++-+-.
T Consensus 173 I~yDTy~e~y--Edl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 173 IYYDTYSELY--EDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred eEeechhhHH--HHHHHHHHHHhhhcCCCceEEEec
Confidence 9864332333 378899999999999999987643
No 229
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.86 E-value=9.2e-06 Score=68.89 Aligned_cols=73 Identities=18% Similarity=0.318 Sum_probs=53.1
Q ss_pred cEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--CCCc-eeEEee
Q 018970 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGR-YDVIWV 236 (348)
Q Consensus 160 ~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~-fD~Ii~ 236 (348)
.|+|+-||.|..+.+++.. +..|+++|+++..++.|+.++.-.|. ..+++|.++|+.++.. .... ||+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv-----~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGV-----ADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT------GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 6999999999999999965 55699999999999999999876554 5689999999877532 1122 899997
Q ss_pred ch
Q 018970 237 QW 238 (348)
Q Consensus 237 ~~ 238 (348)
+.
T Consensus 76 SP 77 (163)
T PF09445_consen 76 SP 77 (163)
T ss_dssp --
T ss_pred CC
Confidence 53
No 230
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.86 E-value=0.0001 Score=67.92 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=71.5
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCC---Cce
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET---GRY 231 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---~~f 231 (348)
+.++..|||+|+|+|.++..|++.+ ..|+++|+++.+++..++.+.. ..++++...|+.++.... +..
T Consensus 28 ~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~--------~~~~~vi~~D~l~~~~~~~~~~~~ 98 (262)
T PF00398_consen 28 LSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS--------NPNVEVINGDFLKWDLYDLLKNQP 98 (262)
T ss_dssp CGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT--------CSSEEEEES-TTTSCGGGHCSSSE
T ss_pred CCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh--------cccceeeecchhccccHHhhcCCc
Confidence 4577899999999999999999887 6799999999999999998864 468999999999987543 356
Q ss_pred eEEeechhhhcCChhhHHHHHHHHHHcCCC
Q 018970 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKP 261 (348)
Q Consensus 232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~Lkp 261 (348)
..|+++-.. +++ ..++.++...-+.
T Consensus 99 ~~vv~NlPy-~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 99 LLVVGNLPY-NIS----SPILRKLLELYRF 123 (262)
T ss_dssp EEEEEEETG-TGH----HHHHHHHHHHGGG
T ss_pred eEEEEEecc-cch----HHHHHHHhhcccc
Confidence 677777665 333 3555555553333
No 231
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.82 E-value=8.7e-05 Score=77.60 Aligned_cols=109 Identities=14% Similarity=0.090 Sum_probs=79.7
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-------------------------------------------CCcEEEEcCCHHH
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRY-------------------------------------------FNEVDLLEPVSHF 192 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~-------------------------------------------~~~v~~vD~S~~~ 192 (348)
.++..++|-.||+|.+.+..+... ...++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 456789999999999987765420 0148999999999
Q ss_pred HHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC--CCceeEEeechhhhcC-C-hhhHHHHHHHHHHcCC---CCcEE
Q 018970 193 LDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQWCIGHL-T-DDDFVSFFKRAKVGLK---PGGFF 265 (348)
Q Consensus 193 l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fD~Ii~~~~l~~~-~-~~d~~~~l~~~~~~Lk---pgG~l 265 (348)
++.|++++...|+ ...+++...|+.+++.+ .++||+|+++..+..- . ..++..+.+.+.+.|+ +|+.+
T Consensus 269 v~~A~~N~~~~g~-----~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~ 343 (702)
T PRK11783 269 IQAARKNARRAGV-----AELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNA 343 (702)
T ss_pred HHHHHHHHHHcCC-----CcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeE
Confidence 9999999987655 45688999999887643 2579999999776432 1 2345556666555554 88877
Q ss_pred EEEe
Q 018970 266 VLKE 269 (348)
Q Consensus 266 ii~~ 269 (348)
++..
T Consensus 344 ~llt 347 (702)
T PRK11783 344 ALFS 347 (702)
T ss_pred EEEe
Confidence 6643
No 232
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.82 E-value=6.5e-06 Score=71.34 Aligned_cols=96 Identities=22% Similarity=0.208 Sum_probs=58.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhC--CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC------C---
Q 018970 157 QHLVALDCGSGIGRITKNLLIRY--FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------T--- 225 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~--~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~------~--- 225 (348)
++.+|||+||++|.++..++.+. ...|+++|+.+.-- ..++.+.++|+.+. .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~-----------------~~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP-----------------LQNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------------------TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccccc-----------------ccceeeeecccchhhHHHhhhhhc
Confidence 45899999999999999999777 34899999876500 12233333333221 1
Q ss_pred -CCCCceeEEeechhhhcCCh---------hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 226 -PETGRYDVIWVQWCIGHLTD---------DDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 226 -~~~~~fD~Ii~~~~l~~~~~---------~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
...+.||+|++-.+...... .-....+.-+...|+|||.+++.-
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 11258999998663222111 123455666778899999999875
No 233
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.80 E-value=5.2e-05 Score=64.84 Aligned_cols=101 Identities=16% Similarity=0.075 Sum_probs=80.2
Q ss_pred CcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeech
Q 018970 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQW 238 (348)
Q Consensus 159 ~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~ 238 (348)
..+.|+|+|+|.++.- +.+....|.+++.+|...+.|.+++.-.| ..++++..+|+.+..++ ..|+|+|-+
T Consensus 34 d~~~DLGaGsGiLs~~-Aa~~A~rViAiE~dPk~a~~a~eN~~v~g------~~n~evv~gDA~~y~fe--~ADvvicEm 104 (252)
T COG4076 34 DTFADLGAGSGILSVV-AAHAAERVIAIEKDPKRARLAEENLHVPG------DVNWEVVVGDARDYDFE--NADVVICEM 104 (252)
T ss_pred hceeeccCCcchHHHH-HHhhhceEEEEecCcHHHHHhhhcCCCCC------CcceEEEeccccccccc--ccceeHHHH
Confidence 5799999999999884 44667789999999999999999964322 36889999999988773 579999855
Q ss_pred hhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
.=..+-++....+++.+...|+-+|.++=.
T Consensus 105 lDTaLi~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 105 LDTALIEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred hhHHhhcccccHHHHHHHHHhhcCCccccH
Confidence 433334456788999999999999998754
No 234
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.79 E-value=0.00069 Score=59.95 Aligned_cols=145 Identities=13% Similarity=0.019 Sum_probs=89.3
Q ss_pred cCCccCCCCCcEEEEeccccHHHHHHHHhCC-C-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--
Q 018970 150 FPNARNNQHLVALDCGSGIGRITKNLLIRYF-N-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-- 225 (348)
Q Consensus 150 l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~-~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-- 225 (348)
+....+.++.+||-+|+.+|....++.+--. . .|++++.|+......-+.+.. ..|+--+-.|+..-.
T Consensus 66 l~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--------R~NIiPIl~DAr~P~~Y 137 (229)
T PF01269_consen 66 LENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--------RPNIIPILEDARHPEKY 137 (229)
T ss_dssp -S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--------STTEEEEES-TTSGGGG
T ss_pred ccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc--------CCceeeeeccCCChHHh
Confidence 3334578999999999999999888876532 2 699999999665544433332 246666667775421
Q ss_pred -CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecC-HH---HHHHHHHhcC
Q 018970 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRS-DF---YFKELFSRCG 300 (348)
Q Consensus 226 -~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s-~~---~l~~l~~~aG 300 (348)
.--+.+|+|++--+- +++..-++.++...||+||.+++.-.... .|. +.+ .+ .-.+.+++.|
T Consensus 138 ~~lv~~VDvI~~DVaQ----p~Qa~I~~~Na~~fLk~gG~~~i~iKa~s----iD~-----t~~p~~vf~~e~~~L~~~~ 204 (229)
T PF01269_consen 138 RMLVEMVDVIFQDVAQ----PDQARIAALNARHFLKPGGHLIISIKARS----IDS-----TADPEEVFAEEVKKLKEEG 204 (229)
T ss_dssp TTTS--EEEEEEE-SS----TTHHHHHHHHHHHHEEEEEEEEEEEEHHH----H-S-----SSSHHHHHHHHHHHHHCTT
T ss_pred hcccccccEEEecCCC----hHHHHHHHHHHHhhccCCcEEEEEEecCc----ccC-----cCCHHHHHHHHHHHHHHcC
Confidence 112579999975441 23667788999999999999988642110 010 011 11 1245667789
Q ss_pred CeEEEEeecCCCCcc
Q 018970 301 LHIYKSKDQKGLPEE 315 (348)
Q Consensus 301 f~~v~~~~~~~~~~~ 315 (348)
|++.+.....+|..+
T Consensus 205 ~~~~e~i~LePy~~d 219 (229)
T PF01269_consen 205 FKPLEQITLEPYERD 219 (229)
T ss_dssp CEEEEEEE-TTTSTT
T ss_pred CChheEeccCCCCCC
Confidence 999999988888665
No 235
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.00072 Score=59.33 Aligned_cols=129 Identities=16% Similarity=0.056 Sum_probs=83.9
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-------
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (348)
+.++..|+|+||-+|.++..+++.... .|+++|+.|--. ..++.+++.|+.+-+
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------------~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------------IPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------------CCCceEEeeeccCccHHHHHHH
Confidence 567899999999999999988776554 499999754211 345889999987754
Q ss_pred -CCCCceeEEeechhh--------hcCChhh-HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHH
Q 018970 226 -PETGRYDVIWVQWCI--------GHLTDDD-FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKEL 295 (348)
Q Consensus 226 -~~~~~fD~Ii~~~~l--------~~~~~~d-~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l 295 (348)
.....+|+|++-.+- +|...-. ...++.-+..+|+|||.+++...... ..+.+...
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~--------------~~~~~l~~ 171 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE--------------DFEDLLKA 171 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC--------------CHHHHHHH
Confidence 222457999964332 3332212 23467777889999999999863221 12334444
Q ss_pred HHhcCCeEEEEeecCCCCcc
Q 018970 296 FSRCGLHIYKSKDQKGLPEE 315 (348)
Q Consensus 296 ~~~aGf~~v~~~~~~~~~~~ 315 (348)
+++ .|+.+.......+...
T Consensus 172 ~~~-~F~~v~~~KP~aSR~~ 190 (205)
T COG0293 172 LRR-LFRKVKIFKPKASRKR 190 (205)
T ss_pred HHH-hhceeEEecCccccCC
Confidence 443 5777776665555443
No 236
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.71 E-value=0.00018 Score=59.85 Aligned_cols=95 Identities=16% Similarity=0.173 Sum_probs=62.6
Q ss_pred CCCCCcEEEEeccccHHHHHHHH-----hCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCC
Q 018970 155 NNQHLVALDCGSGIGRITKNLLI-----RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETG 229 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~-----~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 229 (348)
..+..+|+|+|||.|+++..|+. .....|+++|.++..++.++++....+. ....+..+...+..+... ..
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~ 98 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGS---DLEKRLSFIQGDIADESS-SD 98 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcc---hhhccchhhccchhhhcc-cC
Confidence 35677999999999999999987 4333799999999999999887665321 112345555555544322 35
Q ss_pred ceeEEeechhhhcCChhhHHHHHHHHHH
Q 018970 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKV 257 (348)
Q Consensus 230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~ 257 (348)
..++++.-++-..++ ..+|+...+
T Consensus 99 ~~~~~vgLHaCG~Ls----~~~l~~~~~ 122 (141)
T PF13679_consen 99 PPDILVGLHACGDLS----DRALRLFIR 122 (141)
T ss_pred CCeEEEEeecccchH----HHHHHHHHH
Confidence 678888655444444 234444444
No 237
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.71 E-value=0.0003 Score=66.23 Aligned_cols=123 Identities=15% Similarity=0.097 Sum_probs=79.9
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
..++.++||+||++|.++..+++++. .|++||.++ |-. .+.. ..++.....|...+.++.+.+|.|
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~~----~L~~--------~~~V~h~~~d~fr~~p~~~~vDwv 274 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MAQ----SLMD--------TGQVEHLRADGFKFRPPRKNVDWL 274 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cCH----hhhC--------CCCEEEEeccCcccCCCCCCCCEE
Confidence 46788999999999999999998888 699999654 222 1222 356888888777765545789999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCC--cEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCe
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPG--GFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLH 302 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~Lkpg--G~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~ 302 (348)
+|-.+- .+..+.+-+.++|..| ..+|+.-.... ...........+.+.+.+.++|..
T Consensus 275 VcDmve------~P~rva~lm~~Wl~~g~cr~aIfnLKlpm-----k~r~~~v~~~l~~i~~~l~~~g~~ 333 (357)
T PRK11760 275 VCDMVE------KPARVAELMAQWLVNGWCREAIFNLKLPM-----KKRYEEVRQCLELIEEQLDENGIN 333 (357)
T ss_pred EEeccc------CHHHHHHHHHHHHhcCcccEEEEEEEcCC-----CCCHHHHHHHHHHHHHHHHHcCCc
Confidence 986662 4567778888888776 23333321110 000011112334467777788874
No 238
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.0006 Score=61.73 Aligned_cols=102 Identities=13% Similarity=0.047 Sum_probs=79.9
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCc
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~ 230 (348)
+.|+.+|||-|.|+|.++.+++..... ++.-+|+-..-.+.|.+.+.+.++ +.++++..-|+...- .....
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-----~~~vt~~hrDVc~~GF~~ks~~ 177 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-----GDNVTVTHRDVCGSGFLIKSLK 177 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-----CcceEEEEeecccCCccccccc
Confidence 789999999999999999999866432 799999999999999999998875 788999988887643 33467
Q ss_pred eeEEeechhhhcCChhhHHHHHHHHHHcCCCCc-EEEEE
Q 018970 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG-FFVLK 268 (348)
Q Consensus 231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG-~lii~ 268 (348)
+|.|+.-. + .+-.++-.++.+||.+| +|+.-
T Consensus 178 aDaVFLDl-----P--aPw~AiPha~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 178 ADAVFLDL-----P--APWEAIPHAAKILKDEGGRLCSF 209 (314)
T ss_pred cceEEEcC-----C--ChhhhhhhhHHHhhhcCceEEec
Confidence 89888633 3 34466777778899876 44443
No 239
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.69 E-value=0.00086 Score=64.42 Aligned_cols=127 Identities=19% Similarity=0.215 Sum_probs=76.7
Q ss_pred cEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-------------
Q 018970 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------------- 226 (348)
Q Consensus 160 ~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~------------- 226 (348)
+|||+=||.|.++..|+.. +..|+|+|+++.+++.|++++...++ .|++|.+.+.+++..
T Consensus 199 ~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i------~n~~f~~~~~~~~~~~~~~~r~~~~~~~ 271 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGI------DNVEFIRGDAEDFAKALAKAREFNRLKG 271 (352)
T ss_dssp EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--------SEEEEE--SHHCCCHHCCS-GGTTGGG
T ss_pred cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCC------CcceEEEeeccchhHHHHhhHHHHhhhh
Confidence 7999999999999998844 45699999999999999999876543 578888876654321
Q ss_pred ---CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeE
Q 018970 227 ---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHI 303 (348)
Q Consensus 227 ---~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~ 303 (348)
....+|+|+.-..=.-+. ..+++.+.+ +.=+++|+.+.. .+.+ ++. .|.+ ||++
T Consensus 272 ~~~~~~~~d~vilDPPR~G~~----~~~~~~~~~---~~~ivYvSCnP~-----------tlaR---Dl~-~L~~-~y~~ 328 (352)
T PF05958_consen 272 IDLKSFKFDAVILDPPRAGLD----EKVIELIKK---LKRIVYVSCNPA-----------TLAR---DLK-ILKE-GYKL 328 (352)
T ss_dssp S-GGCTTESEEEE---TT-SC----HHHHHHHHH---SSEEEEEES-HH-----------HHHH---HHH-HHHC-CEEE
T ss_pred hhhhhcCCCEEEEcCCCCCch----HHHHHHHhc---CCeEEEEECCHH-----------HHHH---HHH-HHhh-cCEE
Confidence 112589998754433333 133444433 345677775321 1112 232 3443 9999
Q ss_pred EEEeecCCCCccc
Q 018970 304 YKSKDQKGLPEEL 316 (348)
Q Consensus 304 v~~~~~~~~~~~l 316 (348)
......--||...
T Consensus 329 ~~v~~~DmFP~T~ 341 (352)
T PF05958_consen 329 EKVQPVDMFPQTH 341 (352)
T ss_dssp EEEEEE-SSTTSS
T ss_pred EEEEEeecCCCCC
Confidence 8888777777643
No 240
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.67 E-value=0.00054 Score=64.44 Aligned_cols=135 Identities=19% Similarity=0.286 Sum_probs=88.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHH--hCCCCCCCcCCCcceeEEEcCCCCCCC-CCCc
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARES--LAPENHMAPDMHKATNFFCVPLQDFTP-ETGR 230 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~--~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~ 230 (348)
+...+||-+|.|.|..++.++ +++ .+++.+|.+|+|++.++.+ ....+ .+.=...++++...|+.+|-. ..+.
T Consensus 288 ~~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N-~~sf~dpRv~Vv~dDAf~wlr~a~~~ 365 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALN-QGSFSDPRVTVVNDDAFQWLRTAADM 365 (508)
T ss_pred cccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhc-cCCccCCeeEEEeccHHHHHHhhccc
Confidence 445689999999999999988 444 4899999999999999843 21110 001113578888888877652 2358
Q ss_pred eeEEeec------hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEE
Q 018970 231 YDVIWVQ------WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIY 304 (348)
Q Consensus 231 fD~Ii~~------~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v 304 (348)
||+||.- .++..+- -..|..-+.+.|+++|.+++..... +. ....+.+ +..-++++||.+.
T Consensus 366 fD~vIVDl~DP~tps~~rlY---S~eFY~ll~~~l~e~Gl~VvQags~---y~---tp~vfw~----i~aTik~AG~~~~ 432 (508)
T COG4262 366 FDVVIVDLPDPSTPSIGRLY---SVEFYRLLSRHLAETGLMVVQAGSP---YF---TPRVFWR----IDATIKSAGYRVW 432 (508)
T ss_pred ccEEEEeCCCCCCcchhhhh---hHHHHHHHHHhcCcCceEEEecCCC---cc---CCceeee----ehhHHHhCcceee
Confidence 9999852 2222211 3568899999999999999864221 10 0111111 3456778887755
Q ss_pred E
Q 018970 305 K 305 (348)
Q Consensus 305 ~ 305 (348)
-
T Consensus 433 P 433 (508)
T COG4262 433 P 433 (508)
T ss_pred e
Confidence 4
No 241
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.66 E-value=5.2e-05 Score=66.43 Aligned_cols=100 Identities=18% Similarity=0.180 Sum_probs=76.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCcee
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD 232 (348)
....|+|.-||.|+.+..++.+++. |.++|++|.-+..|+.+++-.|. ..+++|.++|+.+.. +....+|
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~-VisIdiDPikIa~AkhNaeiYGI-----~~rItFI~GD~ld~~~~lq~~K~~~~ 167 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY-VIAIDIDPVKIACARHNAEVYGV-----PDRITFICGDFLDLASKLKADKIKYD 167 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe-EEEEeccHHHHHHHhccceeecC-----CceeEEEechHHHHHHHHhhhhheee
Confidence 3458999999999999999988886 99999999999999999987766 568999999987642 3334578
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcE
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGF 264 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~ 264 (348)
+|+.+.....-. ....-+-.+...++|.|.
T Consensus 168 ~vf~sppwggp~--y~~~~~~DL~~~~~p~~~ 197 (263)
T KOG2730|consen 168 CVFLSPPWGGPS--YLRADVYDLETHLKPMGT 197 (263)
T ss_pred eeecCCCCCCcc--hhhhhhhhhhhhcchhHH
Confidence 888776554422 344445556666676654
No 242
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.65 E-value=0.00029 Score=60.86 Aligned_cols=100 Identities=19% Similarity=0.083 Sum_probs=75.6
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
.-.+.+|||+|+|+|..++.-+..+...|...|+.|..+...+-+.+.+ +.++.+...|+.. ++..||+|
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~an-------gv~i~~~~~d~~g---~~~~~Dl~ 146 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAAN-------GVSILFTHADLIG---SPPAFDLL 146 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhc-------cceeEEeeccccC---CCcceeEE
Confidence 4567899999999999999888888889999999988888777776654 3467787777765 34679999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii 267 (348)
+...++..=+ .-..++. +.+.|+..|..++
T Consensus 147 LagDlfy~~~--~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 147 LAGDLFYNHT--EADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred EeeceecCch--HHHHHHH-HHHHHHhCCCEEE
Confidence 9988877544 3345566 6666666665554
No 243
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.63 E-value=0.00047 Score=60.99 Aligned_cols=111 Identities=18% Similarity=0.162 Sum_probs=64.8
Q ss_pred CCCCCcEEEEeccccHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhC-------CCCCCCcCCCcceeEEEcCCCCCCC
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLA-------PENHMAPDMHKATNFFCVPLQDFTP 226 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~-------~~~~~~~~~~~~i~~~~~d~~~~~~ 226 (348)
++++...+|||||.|......+.. ++..+.|+|+.+...+.|+.... ..|. . ...+++..+|+.+.+.
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~---~-~~~v~l~~gdfl~~~~ 115 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGK---R-PGKVELIHGDFLDPDF 115 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB-------EEEEECS-TTTHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc---c-cccceeeccCccccHh
Confidence 678889999999999998776644 45569999999998887765321 1111 0 2457778888765331
Q ss_pred C---CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970 227 E---TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (348)
Q Consensus 227 ~---~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~ 272 (348)
. -...|+|++++.. ++ +++...|.+...-||+|-.++-.....
T Consensus 116 ~~~~~s~AdvVf~Nn~~--F~-~~l~~~L~~~~~~lk~G~~IIs~~~~~ 161 (205)
T PF08123_consen 116 VKDIWSDADVVFVNNTC--FD-PDLNLALAELLLELKPGARIISTKPFC 161 (205)
T ss_dssp HHHHGHC-SEEEE--TT--T--HHHHHHHHHHHTTS-TT-EEEESS-SS
T ss_pred HhhhhcCCCEEEEeccc--cC-HHHHHHHHHHHhcCCCCCEEEECCCcC
Confidence 1 0246999997763 22 366777788888899988876544433
No 244
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.58 E-value=0.0022 Score=56.56 Aligned_cols=129 Identities=17% Similarity=0.053 Sum_probs=93.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
.+.++.||||-.|++..++...+.. .+++.|+++.-++.|.+++...++ ...++...+|...--..+..+|+|+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l-----~~~i~vr~~dgl~~l~~~d~~d~iv 90 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL-----SERIDVRLGDGLAVLELEDEIDVIV 90 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC-----cceEEEeccCCccccCccCCcCEEE
Confidence 4456999999999999999987765 899999999999999999988665 4567777777643223334799998
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecC
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQK 310 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~ 310 (348)
..++=.. -+..++.+-.+-|+-=-.+++..+ .....+++++...+|.++.+....
T Consensus 91 IAGMGG~----lI~~ILee~~~~l~~~~rlILQPn----------------~~~~~LR~~L~~~~~~I~~E~ile 145 (226)
T COG2384 91 IAGMGGT----LIREILEEGKEKLKGVERLILQPN----------------IHTYELREWLSANSYEIKAETILE 145 (226)
T ss_pred EeCCcHH----HHHHHHHHhhhhhcCcceEEECCC----------------CCHHHHHHHHHhCCceeeeeeeec
Confidence 7665332 455677777776653234444332 134578999999999998866544
No 245
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.56 E-value=0.001 Score=63.54 Aligned_cols=110 Identities=15% Similarity=0.061 Sum_probs=81.0
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCC----------------------------------------cEEEEcCCHHHHH
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFN----------------------------------------EVDLLEPVSHFLD 194 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~----------------------------------------~v~~vD~S~~~l~ 194 (348)
..++..++|-=||+|.+.+..+....+ .+.|+|+++.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 455578999999999999887755421 2779999999999
Q ss_pred HHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhh-cCCh-hhHH----HHHHHHHHcCCCCcEEEEE
Q 018970 195 AARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG-HLTD-DDFV----SFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 195 ~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~-~~~~-~d~~----~~l~~~~~~LkpgG~lii~ 268 (348)
.|+.|+...|+ ...|.|.+.|+.++..+.+.+|+||++.... -+.+ ..+. .+.+.+.+.++--+.++++
T Consensus 269 ~Ak~NA~~AGv-----~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~t 343 (381)
T COG0116 269 GAKANARAAGV-----GDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHHHHhcCC-----CceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 99999988766 6779999999999886547899999986654 1221 1222 3444555666655666665
Q ss_pred e
Q 018970 269 E 269 (348)
Q Consensus 269 ~ 269 (348)
.
T Consensus 344 t 344 (381)
T COG0116 344 T 344 (381)
T ss_pred c
Confidence 4
No 246
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00016 Score=67.55 Aligned_cols=115 Identities=16% Similarity=0.066 Sum_probs=71.7
Q ss_pred CCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 158 ~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
+.+|||||.|+|.-+.++-.-.++ .++.++.|+..-+........... .-......-++.|-.+++.. ..|++|+
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t--~~td~r~s~vt~dRl~lp~a-d~ytl~i 190 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST--EKTDWRASDVTEDRLSLPAA-DLYTLAI 190 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc--ccCCCCCCccchhccCCCcc-ceeehhh
Confidence 456999999999877765544554 788899988766655443322100 00011111122233334333 5788888
Q ss_pred echhhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEecccCCC
Q 018970 236 VQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSG 275 (348)
Q Consensus 236 ~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~~~~~~~~ 275 (348)
...-|-+... ..+...++++..++.|||.|+|.|.....|
T Consensus 191 ~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 191 VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred hhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 7666655543 446668999999999999999988544433
No 247
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.55 E-value=0.00038 Score=64.06 Aligned_cols=107 Identities=19% Similarity=0.202 Sum_probs=67.5
Q ss_pred CCCcEEEEeccccHHHHHHHHh--CCC-cEEEEcCCHHHHHHHHHHhC-CCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970 157 QHLVALDCGSGIGRITKNLLIR--YFN-EVDLLEPVSHFLDAARESLA-PENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~--~~~-~v~~vD~S~~~l~~a~~~~~-~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (348)
.+.+|+=||||.=-++..++.+ +.. .|+++|+++..++.+++.+. ..++ ...+.|+++|..+....-..||
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----~~~m~f~~~d~~~~~~dl~~~D 194 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----SKRMSFITADVLDVTYDLKEYD 194 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------SSEEEEES-GGGG-GG----S
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----cCCeEEEecchhccccccccCC
Confidence 4569999999998887666653 222 68999999999999998776 3232 5679999999877654446899
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+|+...-... +.++-.+++.++.+.++||..+++..
T Consensus 195 vV~lAalVg~-~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 195 VVFLAALVGM-DAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp EEEE-TT-S-----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred EEEEhhhccc-ccchHHHHHHHHHhhCCCCcEEEEec
Confidence 9997654442 23456799999999999999999874
No 248
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.0013 Score=63.22 Aligned_cols=109 Identities=22% Similarity=0.185 Sum_probs=81.1
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCC---cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CCC
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFN---EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PET 228 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~---~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~ 228 (348)
+.++.+|||+.++.|.=|.++++.... .|+++|.|+.-+...++++.+.|. .++.....|...++ ...
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~------~nv~~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV------RNVIVVNKDARRLAELLPGG 227 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC------CceEEEeccccccccccccc
Confidence 788899999999999999999877553 369999999999999999988765 34566777765543 222
Q ss_pred CceeEEee------chhhhc-------CChhh-------HHHHHHHHHHcCCCCcEEEEEe
Q 018970 229 GRYDVIWV------QWCIGH-------LTDDD-------FVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 229 ~~fD~Ii~------~~~l~~-------~~~~d-------~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+.||.|+. .++++- .+..+ ...+|..+.++|||||.|+.++
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYST 288 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 35999984 233321 11111 3568999999999999999875
No 249
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.45 E-value=0.00031 Score=58.09 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=46.4
Q ss_pred cEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC
Q 018970 160 VALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223 (348)
Q Consensus 160 ~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~ 223 (348)
+|||||||.|.++..++..++. +|+++|+++.+.+.+++++...++ .++.+....+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~------~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL------PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEEeeeeC
Confidence 4899999999999999877765 799999999999999998765432 246666665544
No 250
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.0063 Score=52.96 Aligned_cols=149 Identities=14% Similarity=0.091 Sum_probs=98.0
Q ss_pred hcCCccCCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--
Q 018970 149 RFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-- 225 (348)
Q Consensus 149 ~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-- 225 (348)
-+...++.++.+||=+|+.+|....++..--.. .+++++.|+.+....-..+.+ ..|+--+-.|+..-.
T Consensus 68 Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~--------R~Ni~PIL~DA~~P~~Y 139 (231)
T COG1889 68 GLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK--------RPNIIPILEDARKPEKY 139 (231)
T ss_pred CcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh--------CCCceeeecccCCcHHh
Confidence 344456889999999999999998888755333 599999999988776665544 245555566664321
Q ss_pred -CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCH-HHH---HHHHHhcC
Q 018970 226 -PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSD-FYF---KELFSRCG 300 (348)
Q Consensus 226 -~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~-~~l---~~l~~~aG 300 (348)
.--+..|+|+.--+ .+....-+..++...||+||.++++-.... .| .+.+. +-+ .+.+++.|
T Consensus 140 ~~~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArS----Id-----vT~dp~~vf~~ev~kL~~~~ 206 (231)
T COG1889 140 RHLVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIAIKARS----ID-----VTADPEEVFKDEVEKLEEGG 206 (231)
T ss_pred hhhcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEEEEeec----cc-----ccCCHHHHHHHHHHHHHhcC
Confidence 11146898886322 223566778899999999997766532111 01 11112 222 34567789
Q ss_pred CeEEEEeecCCCCccceE
Q 018970 301 LHIYKSKDQKGLPEELFA 318 (348)
Q Consensus 301 f~~v~~~~~~~~~~~l~~ 318 (348)
|++.+.....++..+.+-
T Consensus 207 f~i~e~~~LePye~DH~~ 224 (231)
T COG1889 207 FEILEVVDLEPYEKDHAL 224 (231)
T ss_pred ceeeEEeccCCcccceEE
Confidence 999999998888776443
No 251
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.37 E-value=0.00053 Score=67.27 Aligned_cols=125 Identities=14% Similarity=0.192 Sum_probs=82.1
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHH----HHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSH----FLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~----~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (348)
.-..|+|..+|.|.++.+|.+.. |+....-+. .+... -+.|+ +.....--+.|+.-+.+||
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vI----ydRGL--------IG~yhDWCE~fsTYPRTYD 429 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVI----YDRGL--------IGVYHDWCEAFSTYPRTYD 429 (506)
T ss_pred ceeeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhh----hhccc--------chhccchhhccCCCCcchh
Confidence 34579999999999999987542 444443322 22211 12222 2222111233443348999
Q ss_pred EEeechhhhcCCh-hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCC
Q 018970 233 VIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKG 311 (348)
Q Consensus 233 ~Ii~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~ 311 (348)
+|++...|....+ -++..++-+|-|+|+|||.++|.+... -.+.++.+++...++......+.+
T Consensus 430 LlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~~---------------vl~~v~~i~~~lrW~~~~~d~e~g 494 (506)
T PF03141_consen 430 LLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD---------------VLEKVKKIAKSLRWEVRIHDTEDG 494 (506)
T ss_pred heehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccHH---------------HHHHHHHHHHhCcceEEEEecCCC
Confidence 9999999988764 458889999999999999999987431 235678888888888666555443
No 252
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.25 E-value=0.0013 Score=59.38 Aligned_cols=153 Identities=12% Similarity=0.068 Sum_probs=88.4
Q ss_pred hhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcc
Q 018970 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKA 213 (348)
Q Consensus 135 ~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~ 213 (348)
+....+++..++.. .+++.+|+|||||---++..+...... .++++|++..+++.....+... +..
T Consensus 89 l~~Ld~fY~~if~~------~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-------~~~ 155 (251)
T PF07091_consen 89 LPNLDEFYDEIFGR------IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-------GVP 155 (251)
T ss_dssp GGGHHHHHHHHCCC------S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-------T-C
T ss_pred hhhHHHHHHHHHhc------CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-------CCC
Confidence 44455555555542 456789999999999999887755433 7999999999999998876553 345
Q ss_pred eeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHH
Q 018970 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFK 293 (348)
Q Consensus 214 i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~ 293 (348)
.++...|+..-+++ ...|+..+.=+++.+........++-+.. +. .=.++|+.+...-+ ....+....-..+++
T Consensus 156 ~~~~v~Dl~~~~~~-~~~DlaLllK~lp~le~q~~g~g~~ll~~-~~-~~~~vVSfPtrSL~---gR~~gm~~~y~~~fe 229 (251)
T PF07091_consen 156 HDARVRDLLSDPPK-EPADLALLLKTLPCLERQRRGAGLELLDA-LR-SPHVVVSFPTRSLG---GRNKGMEQTYSAWFE 229 (251)
T ss_dssp EEEEEE-TTTSHTT-SEESEEEEET-HHHHHHHSTTHHHHHHHH-SC-ESEEEEEEES----------TTHHHCHHHHHH
T ss_pred cceeEeeeeccCCC-CCcchhhHHHHHHHHHHHhcchHHHHHHH-hC-CCeEEEeccccccc---cCccccccCHHHHHH
Confidence 67777787765444 67999998877776653222222322222 22 22566665432100 111112223345567
Q ss_pred HHHHhcCCeEEEE
Q 018970 294 ELFSRCGLHIYKS 306 (348)
Q Consensus 294 ~l~~~aGf~~v~~ 306 (348)
..+...|+.+-+.
T Consensus 230 ~~~~~~~~~~~~~ 242 (251)
T PF07091_consen 230 ALAAERGWIVDRL 242 (251)
T ss_dssp HHCCTTCEEEEEE
T ss_pred HhcccCCceeeee
Confidence 7777777774443
No 253
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.09 E-value=0.015 Score=53.96 Aligned_cols=146 Identities=15% Similarity=0.103 Sum_probs=93.1
Q ss_pred cEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC--CCceeEEeec
Q 018970 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDVIWVQ 237 (348)
Q Consensus 160 ~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fD~Ii~~ 237 (348)
+|+|+-||.|.++..+...++..+.++|+++.+++..+.++... +...|+.++... .+.+|+|+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~------------~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK------------LIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC------------CccCccccCchhhcCCCCCEEEeC
Confidence 69999999999999988778888899999999999998887541 344566665432 2579999975
Q ss_pred hhhhcCCh-------hh-HHHH---HHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970 238 WCIGHLTD-------DD-FVSF---FKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKS 306 (348)
Q Consensus 238 ~~l~~~~~-------~d-~~~~---l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~ 306 (348)
.....+.. +| ...+ +-++.+.++| .+++.||+..-.. .. .......+.+.|++.||.+...
T Consensus 70 pPCq~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P--~~~v~ENV~g~~~----~~--~~~~~~~i~~~l~~~GY~~~~~ 141 (275)
T cd00315 70 FPCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKP--KYFLLENVKGLLT----HD--NGNTLKVILNTLEELGYNVYWK 141 (275)
T ss_pred CCChhhhHHhhcCCCCCchHHHHHHHHHHHHhcCC--CEEEEEcCcchhc----cC--chHHHHHHHHHHHhCCcEEEEE
Confidence 43332210 11 1112 2234444566 4777787743111 00 0123456888899999997664
Q ss_pred ee---cCCCCccceEEEEEEEe
Q 018970 307 KD---QKGLPEELFAVKMYALT 325 (348)
Q Consensus 307 ~~---~~~~~~~l~~v~~~~l~ 325 (348)
.. ..+.|..--.+.+.+.+
T Consensus 142 ~l~a~~~GvPQ~R~R~~~ia~~ 163 (275)
T cd00315 142 LLNASDYGVPQNRERVFIIGIR 163 (275)
T ss_pred EEEHHHcCCCCCCcEEEEEEEe
Confidence 43 34567665566666655
No 254
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.00088 Score=65.75 Aligned_cols=118 Identities=15% Similarity=0.088 Sum_probs=78.7
Q ss_pred HHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc
Q 018970 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV 219 (348)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~ 219 (348)
+.|-..+.++.. ++.+..+||+-||||.++..++ ++...|.|+++++..++.|+.++...|. .|++|+++
T Consensus 369 evLys~i~e~~~---l~~~k~llDv~CGTG~iglala-~~~~~ViGvEi~~~aV~dA~~nA~~Ngi------sNa~Fi~g 438 (534)
T KOG2187|consen 369 EVLYSTIGEWAG---LPADKTLLDVCCGTGTIGLALA-RGVKRVIGVEISPDAVEDAEKNAQINGI------SNATFIVG 438 (534)
T ss_pred HHHHHHHHHHhC---CCCCcEEEEEeecCCceehhhh-ccccceeeeecChhhcchhhhcchhcCc------cceeeeec
Confidence 344444444444 6777899999999999999887 6666799999999999999999887654 68999999
Q ss_pred CCCCCCC-----CCCceeEEeechhhh-cCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970 220 PLQDFTP-----ETGRYDVIWVQWCIG-HLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (348)
Q Consensus 220 d~~~~~~-----~~~~fD~Ii~~~~l~-~~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 271 (348)
-++++-. ..++=++|.....-. -+. ..+++.+...-.|--.++++.+.
T Consensus 439 qaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh----~~~ik~l~~~~~~~rlvyvSCn~ 492 (534)
T KOG2187|consen 439 QAEDLFPSLLTPCCDSETLVAIIDPPRKGLH----MKVIKALRAYKNPRRLVYVSCNP 492 (534)
T ss_pred chhhccchhcccCCCCCceEEEECCCccccc----HHHHHHHHhccCccceEEEEcCH
Confidence 5555321 112334333222111 111 35666666665577777777654
No 255
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.00 E-value=0.0002 Score=56.17 Aligned_cols=99 Identities=20% Similarity=0.248 Sum_probs=42.0
Q ss_pred EEEeccccHHHHHHHHhCC----CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCceeEEe
Q 018970 162 LDCGSGIGRITKNLLIRYF----NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIW 235 (348)
Q Consensus 162 LDvGcG~G~~~~~la~~~~----~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~Ii 235 (348)
||||+..|..+..+++... ..++++|..+. .+.+++.+.+.++ ..++++..++..+.- ...++||+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~-----~~~~~~~~g~s~~~l~~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL-----SDRVEFIQGDSPDFLPSLPDGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG------BTEEEEES-THHHHHHHHH--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC-----CCeEEEEEcCcHHHHHHcCCCCEEEEE
Confidence 6999999999888775422 15999999885 2233333322221 456899998876531 1236899999
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
.-..-.+ +.....++.+...|+|||++++-+
T Consensus 75 iDg~H~~---~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 75 IDGDHSY---EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp EES---H---HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ECCCCCH---HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 8553111 246678899999999999988753
No 256
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.88 E-value=0.0039 Score=58.05 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=46.7
Q ss_pred CCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCC-CCCCcCCCcceeEEEcCCC----C-CCCCCCc
Q 018970 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPE-NHMAPDMHKATNFFCVPLQ----D-FTPETGR 230 (348)
Q Consensus 158 ~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~-~~~~~~~~~~i~~~~~d~~----~-~~~~~~~ 230 (348)
..++||||+|..-+--.|..+.+. .++|+|+++..++.|++++... ++ ..+|.+....-. . +..+...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L-----~~~I~l~~~~~~~~i~~~i~~~~e~ 177 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL-----ESRIELRKQKNPDNIFDGIIQPNER 177 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T------TTTEEEEE--ST-SSTTTSTT--S-
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc-----ccceEEEEcCCccccchhhhcccce
Confidence 568999999987654334433233 6999999999999999998764 33 456777655221 1 1123368
Q ss_pred eeEEeechhhhcCCh
Q 018970 231 YDVIWVQWCIGHLTD 245 (348)
Q Consensus 231 fD~Ii~~~~l~~~~~ 245 (348)
||+.+|+..|+.-.+
T Consensus 178 ~dftmCNPPFy~s~~ 192 (299)
T PF05971_consen 178 FDFTMCNPPFYSSQE 192 (299)
T ss_dssp EEEEEE-----SS--
T ss_pred eeEEecCCccccChh
Confidence 999999999997653
No 257
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.83 E-value=0.0024 Score=59.45 Aligned_cols=109 Identities=19% Similarity=0.143 Sum_probs=79.4
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCC--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCc
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYF--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~ 230 (348)
+.++.+|||+.++.|.=+..+++... ..+++.|+++.-+...++++.+.|. .++.....|..... .....
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 156 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV------FNVIVINADARKLDPKKPESK 156 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-------SSEEEEESHHHHHHHHHHTTT
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC------ceEEEEeeccccccccccccc
Confidence 57788999999999999999988765 3899999999999999988877654 35666656655442 12235
Q ss_pred eeEEee------chhhhcCCh-------hh-------HHHHHHHHHHcC----CCCcEEEEEe
Q 018970 231 YDVIWV------QWCIGHLTD-------DD-------FVSFFKRAKVGL----KPGGFFVLKE 269 (348)
Q Consensus 231 fD~Ii~------~~~l~~~~~-------~d-------~~~~l~~~~~~L----kpgG~lii~~ 269 (348)
||.|+. ..++..-++ ++ ...+|+.+.+.+ ||||.++.+.
T Consensus 157 fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 157 FDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred cchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 999984 222332221 11 246899999999 9999999875
No 258
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.75 E-value=0.0065 Score=55.05 Aligned_cols=110 Identities=15% Similarity=0.085 Sum_probs=68.3
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CCCCc-ee
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGR-YD 232 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~-fD 232 (348)
...+|||+|+|+|..+...+.....+|...|... .++..+.+....+......+..+.....++.+.. .-... +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 3567999999999888876655555688888644 3333333322111111111234555555554432 11123 99
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+|+++.++.+-. .+..++.-+...|-.+|.+++..
T Consensus 165 lilasDvvy~~~--~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 165 LILASDVVYEEE--SFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEEEeeeeecCC--cchhHHHHHHHHHhcCCeEEEEE
Confidence 999999988765 66778888888888888655554
No 259
>PHA01634 hypothetical protein
Probab=96.71 E-value=0.0065 Score=48.91 Aligned_cols=46 Identities=17% Similarity=0.014 Sum_probs=41.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCC
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~ 202 (348)
.+.+|+|||++.|..+++++.++...|.++++++...+..+++.+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence 3468999999999999999999999999999999999999987654
No 260
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.70 E-value=0.0051 Score=53.51 Aligned_cols=111 Identities=13% Similarity=0.139 Sum_probs=68.8
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCc-CCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAP-DMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~-~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
+...+.|||||-|.++..|+..+++ -+.|.++--..-+..++++...+.... ....|+.+...+...+-+ +-|.--
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp--n~f~kg 137 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP--NFFEKG 137 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc--chhhhc
Confidence 4457999999999999999988887 789999988888888887653321111 113455565555444321 111111
Q ss_pred eechhhhcCChhh-----------HHHHHHHHHHcCCCCcEEEEEe
Q 018970 235 WVQWCIGHLTDDD-----------FVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 235 i~~~~l~~~~~~d-----------~~~~l~~~~~~LkpgG~lii~~ 269 (348)
..+-.+..++|.. -..++.+..-+|++||.++...
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 1112222222211 1246788888999999998865
No 261
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.69 E-value=0.0047 Score=57.82 Aligned_cols=75 Identities=17% Similarity=0.171 Sum_probs=58.7
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----CCC
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PET 228 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~~ 228 (348)
+.++..++|+-||.|..+..++.... ..|+++|.++.+++.+++.+... ..++.++..++.++. ...
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-------~~R~~~i~~nF~~l~~~l~~~~~ 90 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-------EGRVVLIHDNFANFFEHLDELLV 90 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-------CCcEEEEeCCHHHHHHHHHhcCC
Confidence 56778999999999999999997743 47999999999999999887542 346888888777653 122
Q ss_pred CceeEEee
Q 018970 229 GRYDVIWV 236 (348)
Q Consensus 229 ~~fD~Ii~ 236 (348)
.++|.|++
T Consensus 91 ~~vDgIl~ 98 (305)
T TIGR00006 91 TKIDGILV 98 (305)
T ss_pred CcccEEEE
Confidence 46888874
No 262
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.062 Score=48.36 Aligned_cols=106 Identities=21% Similarity=0.316 Sum_probs=75.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCC-----cEEEEcCCHHHHHHHHHH-hCCCCCCCcCCCcceeEEEcCCCC----CC
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFN-----EVDLLEPVSHFLDAARES-LAPENHMAPDMHKATNFFCVPLQD----FT 225 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~-----~v~~vD~S~~~l~~a~~~-~~~~~~~~~~~~~~i~~~~~d~~~----~~ 225 (348)
..+.+.+|+|+|+..-++.|+..... .+..+|+|...++..-+. ..+.. ...+.-.++|.+. ++
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~------~l~v~~l~~~~~~~La~~~ 150 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP------GLEVNALCGDYELALAELP 150 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC------CCeEeehhhhHHHHHhccc
Confidence 44679999999999888877765332 799999999999664443 33210 1234445555543 22
Q ss_pred CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
..++==.++...++..+++++...|+.++...|.||-++++.
T Consensus 151 -~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 151 -RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred -CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 223334555678899999988999999999999999999884
No 263
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.44 E-value=0.0059 Score=50.40 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=56.9
Q ss_pred cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCceeEEeechhhhcCChh---------hHHH
Q 018970 182 EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRYDVIWVQWCIGHLTDD---------DFVS 250 (348)
Q Consensus 182 ~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~Ii~~~~l~~~~~~---------d~~~ 250 (348)
+|+++|+-+.+++..++++.+.++ ..+++++..+=+++. .+.+++|+++.+.. ++|-. ....
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~-----~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~ 73 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL-----EDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLK 73 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT------GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC-----CCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHH
Confidence 489999999999999999987654 346888877555443 12258999997643 44432 2567
Q ss_pred HHHHHHHcCCCCcEEEEEe
Q 018970 251 FFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 251 ~l~~~~~~LkpgG~lii~~ 269 (348)
+++.+.++|+|||.+.+.-
T Consensus 74 Al~~al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 74 ALEAALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHhhccCCEEEEEE
Confidence 8999999999999999875
No 264
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.36 E-value=0.0017 Score=50.99 Aligned_cols=80 Identities=24% Similarity=0.387 Sum_probs=42.3
Q ss_pred ceeEEeechhhh--cCC--hhhHHHHHHHHHHcCCCCcEEEEEecccC----C---CceecCCCCceecCHHHHHHHHHh
Q 018970 230 RYDVIWVQWCIG--HLT--DDDFVSFFKRAKVGLKPGGFFVLKENIAR----S---GFVLDKEDRSITRSDFYFKELFSR 298 (348)
Q Consensus 230 ~fD~Ii~~~~l~--~~~--~~d~~~~l~~~~~~LkpgG~lii~~~~~~----~---~~~~d~~~~~~~~s~~~l~~l~~~ 298 (348)
.||+|+|-.+.. |+. |+-+..+++++++.|+|||.|++-..... . ..........+.+.++.+.+.+.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~ 80 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLE 80 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTS
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHh
Confidence 489999855443 333 45588999999999999999999541110 0 000000111122344567887777
Q ss_pred --cCCeEEEEeec
Q 018970 299 --CGLHIYKSKDQ 309 (348)
Q Consensus 299 --aGf~~v~~~~~ 309 (348)
.||..++....
T Consensus 81 ~evGF~~~e~~~~ 93 (110)
T PF06859_consen 81 PEVGFSSVEELGV 93 (110)
T ss_dssp TTT---EEEEE--
T ss_pred cccceEEEEEccc
Confidence 69998874443
No 265
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.18 E-value=0.12 Score=46.41 Aligned_cols=131 Identities=16% Similarity=0.112 Sum_probs=73.3
Q ss_pred CCCcEEEEeccccHHHHHHH-HhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CCCC-CCceeE
Q 018970 157 QHLVALDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPE-TGRYDV 233 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la-~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~-~~~fD~ 233 (348)
.+.+||-+|=..-. +..++ ...+.+|+.+|+++.+++..++.+.+.|+ .++.+..|+.+ +|.. .++||+
T Consensus 44 ~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-------~i~~~~~DlR~~LP~~~~~~fD~ 115 (243)
T PF01861_consen 44 EGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-------PIEAVHYDLRDPLPEELRGKFDV 115 (243)
T ss_dssp TT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---------EEEE---TTS---TTTSS-BSE
T ss_pred cCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-------ceEEEEecccccCCHHHhcCCCE
Confidence 46789999966543 23333 24455899999999999999988876543 48888889876 3322 389999
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCc-EEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGG-FFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD 308 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG-~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~ 308 (348)
+++...-. .+-+.-|+.+....||.-| ..+++-.... .+. ..--.+++.+.+.||.+.+...
T Consensus 116 f~TDPPyT---~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~---------~s~-~~~~~~Q~~l~~~gl~i~dii~ 178 (243)
T PF01861_consen 116 FFTDPPYT---PEGLKLFLSRGIEALKGEGCAGYFGFTHKE---------ASP-DKWLEVQRFLLEMGLVITDIIP 178 (243)
T ss_dssp EEE---SS---HHHHHHHHHHHHHTB-STT-EEEEEE-TTT-----------H-HHHHHHHHHHHTS--EEEEEEE
T ss_pred EEeCCCCC---HHHHHHHHHHHHHHhCCCCceEEEEEecCc---------CcH-HHHHHHHHHHHHCCcCHHHHHh
Confidence 99865422 1357789999999998866 4444322111 000 0012467888899999888554
No 266
>PRK10742 putative methyltransferase; Provisional
Probab=96.11 E-value=0.01 Score=53.65 Aligned_cols=87 Identities=16% Similarity=0.085 Sum_probs=63.8
Q ss_pred CCCCC--cEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCC---CcCCCcceeEEEcCCCCCCC-CC
Q 018970 155 NNQHL--VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHM---APDMHKATNFFCVPLQDFTP-ET 228 (348)
Q Consensus 155 ~~~~~--~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~---~~~~~~~i~~~~~d~~~~~~-~~ 228 (348)
++++. +|||+=+|.|..+..++..+.. |+++|-++.+....++.+...... ...+..++++...|..++-. ..
T Consensus 84 lk~g~~p~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~ 162 (250)
T PRK10742 84 IKGDYLPDVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_pred CCCCCCCEEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence 34544 8999999999999999989887 999999999998888776542100 00012467888887766431 22
Q ss_pred CceeEEeechhhhc
Q 018970 229 GRYDVIWVQWCIGH 242 (348)
Q Consensus 229 ~~fD~Ii~~~~l~~ 242 (348)
.+||+|++-.++.|
T Consensus 163 ~~fDVVYlDPMfp~ 176 (250)
T PRK10742 163 PRPQVVYLDPMFPH 176 (250)
T ss_pred CCCcEEEECCCCCC
Confidence 47999999888777
No 267
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.08 E-value=0.023 Score=51.90 Aligned_cols=83 Identities=13% Similarity=0.204 Sum_probs=49.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhCCC---------cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC
Q 018970 157 QHLVALDCGSGIGRITKNLLIRYFN---------EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE 227 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~~~---------~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 227 (348)
.+.+|+|+|+|+|.++..++..... +++.+|+|+.+.+.-++.+............++.+ ..++.+.+
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p-- 94 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP-- 94 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS---
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc--
Confidence 3579999999999999998865221 79999999999999988886521000011223444 22333332
Q ss_pred CCceeEEeechhhhcCC
Q 018970 228 TGRYDVIWVQWCIGHLT 244 (348)
Q Consensus 228 ~~~fD~Ii~~~~l~~~~ 244 (348)
..-+|+++.+|..++
T Consensus 95 --~~~~iiaNE~~DAlP 109 (252)
T PF02636_consen 95 --FPGFIIANELFDALP 109 (252)
T ss_dssp --CCEEEEEESSGGGS-
T ss_pred --CCEEEEEeeehhcCc
Confidence 235666666666665
No 268
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.07 E-value=0.011 Score=54.42 Aligned_cols=113 Identities=15% Similarity=0.111 Sum_probs=78.7
Q ss_pred CCCCCcEEEEeccccHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCce
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGRY 231 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~f 231 (348)
...+.+||-||.|.|.+.+....+ -+.+++.+|++...++..++.++..... -.++++..+-+|-..+- ...++|
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~g--y~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACG--YEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcc--cCCCceEEEeccHHHHHHHhccCCc
Confidence 456779999999999999887754 2338999999999999998877643111 11356777777654432 224789
Q ss_pred eEEeec--hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 232 DVIWVQ--WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 232 D~Ii~~--~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
|+|+.- ....-....-...++..+.+.||+||++++..
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 999952 22221111224678899999999999999865
No 269
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.92 E-value=0.028 Score=54.37 Aligned_cols=101 Identities=16% Similarity=0.133 Sum_probs=66.1
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-CCceeEEee
Q 018970 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWV 236 (348)
Q Consensus 158 ~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~Ii~ 236 (348)
...|||||+|||.++.-.+..+.+.|++++.-..|.+.|++...+.|. ..+|+++.---++.... ..+.|+++.
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~-----SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM-----SDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC-----ccceeeeccccceeeecCcchhhhhhH
Confidence 357999999999999977777888999999999999999998877655 45666665443333321 134666665
Q ss_pred chhhhcCChhhHHHHHHHHHHcC-CCCc
Q 018970 237 QWCIGHLTDDDFVSFFKRAKVGL-KPGG 263 (348)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~~~L-kpgG 263 (348)
-....-+.-+-...-++++++.| +||.
T Consensus 142 e~fdtEligeGalps~qhAh~~L~~~nc 169 (636)
T KOG1501|consen 142 EDFDTELIGEGALPSLQHAHDMLLVDNC 169 (636)
T ss_pred hhhhhhhhccccchhHHHHHHHhcccCC
Confidence 43333332222233455555544 5553
No 270
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.91 E-value=0.051 Score=46.84 Aligned_cols=99 Identities=20% Similarity=0.125 Sum_probs=59.3
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhC-CC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc-CCCCCC------
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRY-FN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFT------ 225 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~-~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~------ 225 (348)
+.++.+|||+||.+|.++.-..++- +. .|.|+|+-.- .....++++++ |+.+-.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------------~p~~Ga~~i~~~dvtdp~~~~ki~ 129 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------------EPPEGATIIQGNDVTDPETYRKIF 129 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------------cCCCCcccccccccCCHHHHHHHH
Confidence 5678999999999999988555443 33 6888886221 01223444444 555421
Q ss_pred --CCCCceeEEeechhhhc--CChhhHH-------HHHHHHHHcCCCCcEEEEEec
Q 018970 226 --PETGRYDVIWVQWCIGH--LTDDDFV-------SFFKRAKVGLKPGGFFVLKEN 270 (348)
Q Consensus 226 --~~~~~fD~Ii~~~~l~~--~~~~d~~-------~~l~~~~~~LkpgG~lii~~~ 270 (348)
.+....|+|++-+.-.. +...|-. .++.-....++|+|.+++...
T Consensus 130 e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w 185 (232)
T KOG4589|consen 130 EALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLW 185 (232)
T ss_pred HhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEe
Confidence 24467899997543221 1111212 234444567889999999763
No 271
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.83 E-value=0.055 Score=51.59 Aligned_cols=114 Identities=18% Similarity=0.082 Sum_probs=56.2
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhC-----------C---C---cEEEEcCCHHHHHHHHHHhCCC--CCCCcCCCccee
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRY-----------F---N---EVDLLEPVSHFLDAARESLAPE--NHMAPDMHKATN 215 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~-----------~---~---~v~~vD~S~~~l~~a~~~~~~~--~~~~~~~~~~i~ 215 (348)
.....+|+|+||..|..+..+.... . . .|...|.-.+=-...=+.+... .+. ......+.
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~-~~~~~f~~ 92 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLK-KFRNYFVS 92 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHH-HTTSEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccC-CCceEEEE
Confidence 3556799999999999887766431 1 0 5666674322111111100000 000 00011122
Q ss_pred EEEcCCCCCCCCCCceeEEeechhhhcCCh-------------------------------------hhHHHHHHHHHHc
Q 018970 216 FFCVPLQDFTPETGRYDVIWVQWCIGHLTD-------------------------------------DDFVSFFKRAKVG 258 (348)
Q Consensus 216 ~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~-------------------------------------~d~~~~l~~~~~~ 258 (348)
-..+.+-+--++.++.|++++..++|++.. .|+..+|+.=++=
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 223344443356789999999999998741 1234455555667
Q ss_pred CCCCcEEEEEe
Q 018970 259 LKPGGFFVLKE 269 (348)
Q Consensus 259 LkpgG~lii~~ 269 (348)
|+|||.+++.-
T Consensus 173 Lv~GG~mvl~~ 183 (334)
T PF03492_consen 173 LVPGGRMVLTF 183 (334)
T ss_dssp EEEEEEEEEEE
T ss_pred eccCcEEEEEE
Confidence 89999999964
No 272
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=95.66 E-value=0.055 Score=52.18 Aligned_cols=108 Identities=16% Similarity=0.078 Sum_probs=76.8
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CCCC
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETG 229 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~ 229 (348)
+.++-+|||..|.+|.=+.+++.-..+ .|.+.|.+..-+...+.++...|. .+......|...++ ++ +
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------~ntiv~n~D~~ef~~~~~~-~ 311 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------TNTIVSNYDGREFPEKEFP-G 311 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------CceEEEccCcccccccccC-c
Confidence 688899999999999988877765333 799999999999999998877654 34444555666654 33 4
Q ss_pred ceeEEee----ch--hhhc------CCh-h-------hHHHHHHHHHHcCCCCcEEEEEe
Q 018970 230 RYDVIWV----QW--CIGH------LTD-D-------DFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 230 ~fD~Ii~----~~--~l~~------~~~-~-------d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+||-|.. +. ++.- ... . -..++|..+.+++++||+|+.++
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 8998873 22 1110 000 0 12467888899999999999875
No 273
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.64 E-value=0.18 Score=48.81 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=33.8
Q ss_pred CCCCceeEEeechhhhcCCh--h----------------------------------hHHHHHHHHHHcCCCCcEEEEEe
Q 018970 226 PETGRYDVIWVQWCIGHLTD--D----------------------------------DFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 226 ~~~~~fD~Ii~~~~l~~~~~--~----------------------------------d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
++.++.+++++.+++|++.. + |+..||+.=++-|.|||.+++.-
T Consensus 158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence 55689999999999998862 1 24456666677799999999974
No 274
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.59 E-value=0.041 Score=54.42 Aligned_cols=114 Identities=17% Similarity=0.223 Sum_probs=78.3
Q ss_pred HhhhcCCccCCCCCcEEEEeccccHHHHHHHHh---CCC--cEEEEcCCHHHHHHHHHH-hCCCCCCCcCCCcceeEEEc
Q 018970 146 LSDRFPNARNNQHLVALDCGSGIGRITKNLLIR---YFN--EVDLLEPVSHFLDAARES-LAPENHMAPDMHKATNFFCV 219 (348)
Q Consensus 146 l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~---~~~--~v~~vD~S~~~l~~a~~~-~~~~~~~~~~~~~~i~~~~~ 219 (348)
+.++.++...+....|+-+|+|.|-+....++. ... .+++++-+|.++-..+.. +..+ ..+++++..
T Consensus 356 L~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W-------~~~Vtii~~ 428 (649)
T KOG0822|consen 356 LLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW-------DNRVTIISS 428 (649)
T ss_pred HHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh-------cCeeEEEec
Confidence 333433322333567899999999887666542 111 689999999999887653 2222 568999999
Q ss_pred CCCCCCCCCCceeEEeechhhhcCCh-hhHHHHHHHHHHcCCCCcEEEE
Q 018970 220 PLQDFTPETGRYDVIWVQWCIGHLTD-DDFVSFFKRAKVGLKPGGFFVL 267 (348)
Q Consensus 220 d~~~~~~~~~~fD~Ii~~~~l~~~~~-~d~~~~l~~~~~~LkpgG~lii 267 (348)
|+.+|..+....|++++- -|.-+.| +=-...|.-+-..|||+|+.|=
T Consensus 429 DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 429 DMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred cccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 999999655789998862 2333332 2234678889999999988764
No 275
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.55 E-value=0.062 Score=51.00 Aligned_cols=99 Identities=16% Similarity=0.077 Sum_probs=68.6
Q ss_pred CccCCCCCcEEEEecc-ccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc-CCCCCCCCCC
Q 018970 152 NARNNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETG 229 (348)
Q Consensus 152 ~~~~~~~~~VLDvGcG-~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~ 229 (348)
....+++.+|+-+|+| -|.++.+++.....+|+++|.|++-++.|++.-.+. +... |.+....-.+
T Consensus 161 ~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~------------~i~~~~~~~~~~~~~ 228 (339)
T COG1064 161 KANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH------------VINSSDSDALEAVKE 228 (339)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE------------EEEcCCchhhHHhHh
Confidence 3557889999999988 356788888754467999999999999998874431 2221 2222221113
Q ss_pred ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (348)
Q Consensus 230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 271 (348)
.||+|+..-. . ..+....+.|++||.+++.-..
T Consensus 229 ~~d~ii~tv~-~--------~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 229 IADAIIDTVG-P--------ATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hCcEEEECCC-h--------hhHHHHHHHHhcCCEEEEECCC
Confidence 4999997655 3 3456677889999999997655
No 276
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=95.23 E-value=0.65 Score=42.66 Aligned_cols=143 Identities=12% Similarity=0.045 Sum_probs=89.2
Q ss_pred CcEEEEeccccHHHHHHHHhCCCcEEEEcCC-HHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CC-------CCCC
Q 018970 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPV-SHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-------PETG 229 (348)
Q Consensus 159 ~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S-~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~-------~~~~ 229 (348)
..|+.+|||-=.-...+. ....+..+|++ |++++.-++.+.+.+. ....+..++.+|+.+ +. +..+
T Consensus 83 ~qvV~LGaGlDTr~~Rl~--~~~~~~~~EvD~P~v~~~K~~~l~~~~~---~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~ 157 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLP--WPDGTRVFEVDQPAVLAFKEKVLAELGA---EPPAHRRAVPVDLRQDWPAALAAAGFDPT 157 (260)
T ss_pred cEEEEeCCccccHHHhcC--CCCCCeEEECCChHHHHHHHHHHHHcCC---CCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence 469999998754444442 22235555544 4455555555554221 113467777778752 21 1123
Q ss_pred ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc------------e--ecCCCCceecCHHHHHHH
Q 018970 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF------------V--LDKEDRSITRSDFYFKEL 295 (348)
Q Consensus 230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~------------~--~d~~~~~~~~s~~~l~~l 295 (348)
.--++++-+++.+++.++...+++.+.+...||+.+++.......+. . .......+.++.+++.++
T Consensus 158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (260)
T TIGR00027 158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEW 237 (260)
T ss_pred CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHH
Confidence 34588889999999999999999999999889998888532211100 0 111222233578899999
Q ss_pred HHhcCCeEEEE
Q 018970 296 FSRCGLHIYKS 306 (348)
Q Consensus 296 ~~~aGf~~v~~ 306 (348)
|.+.||.+...
T Consensus 238 l~~~Gw~~~~~ 248 (260)
T TIGR00027 238 LAERGWRASEH 248 (260)
T ss_pred HHHCCCeeecC
Confidence 99999998764
No 277
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.16 E-value=0.11 Score=43.17 Aligned_cols=115 Identities=17% Similarity=0.096 Sum_probs=72.6
Q ss_pred hhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCccee
Q 018970 136 KGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATN 215 (348)
Q Consensus 136 ~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~ 215 (348)
....+.++.++.- +. .++..+.+|+|+|.|++....+..+....+|++.++-.+..++-..-..|. .+...
T Consensus 55 pAtteQv~nVLSl-l~---~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~-----~k~tr 125 (199)
T KOG4058|consen 55 PATTEQVENVLSL-LR---GNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGC-----AKSTR 125 (199)
T ss_pred CccHHHHHHHHHH-cc---CCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhc-----ccchh
Confidence 3344555555532 22 356689999999999999988877745689999999999888765544443 45677
Q ss_pred EEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970 216 FFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (348)
Q Consensus 216 ~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~li 266 (348)
|..-|+-.+...+ |..|++..+-..++ |++ .++..-|..|-.++
T Consensus 126 f~RkdlwK~dl~d--y~~vviFgaes~m~--dLe---~KL~~E~p~nt~vv 169 (199)
T KOG4058|consen 126 FRRKDLWKVDLRD--YRNVVIFGAESVMP--DLE---DKLRTELPANTRVV 169 (199)
T ss_pred hhhhhhhhccccc--cceEEEeehHHHHh--hhH---HHHHhhCcCCCeEE
Confidence 7777877666543 44444444434444 322 33443444444443
No 278
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.16 E-value=0.074 Score=49.30 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=58.8
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----CC
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----PE 227 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~~ 227 (348)
+.++...+|+--|.|..+..+++++.. .++++|.++.+++.|++.+... ..++.+...++.++. ..
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-------~~r~~~v~~~F~~l~~~l~~~~ 93 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-------DGRVTLVHGNFANLAEALKELG 93 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-------CCcEEEEeCcHHHHHHHHHhcC
Confidence 677789999999999999999999864 6999999999999999988653 356778877766543 11
Q ss_pred CCceeEEe
Q 018970 228 TGRYDVIW 235 (348)
Q Consensus 228 ~~~fD~Ii 235 (348)
.+.+|-|+
T Consensus 94 i~~vDGiL 101 (314)
T COG0275 94 IGKVDGIL 101 (314)
T ss_pred CCceeEEE
Confidence 24667666
No 279
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.01 E-value=0.061 Score=42.13 Aligned_cols=45 Identities=20% Similarity=0.176 Sum_probs=31.0
Q ss_pred HHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcC
Q 018970 140 AFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEP 188 (348)
Q Consensus 140 ~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~ 188 (348)
.+|..+-..... ..+....+|||||+|.+..-|...++. =.|+|.
T Consensus 44 AyLi~LW~~~~~---~~~~~~FVDlGCGNGLLV~IL~~EGy~-G~GiD~ 88 (112)
T PF07757_consen 44 AYLIELWRDMYG---EQKFQGFVDLGCGNGLLVYILNSEGYP-GWGIDA 88 (112)
T ss_pred HHHHHHHhcccC---CCCCCceEEccCCchHHHHHHHhCCCC-cccccc
Confidence 444444443322 245668999999999999888888876 466763
No 280
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.87 E-value=0.21 Score=50.19 Aligned_cols=100 Identities=13% Similarity=0.117 Sum_probs=65.4
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC----------
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---------- 223 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~---------- 223 (348)
..++.+||-+|||. |..+...+......|+++|.+++-++.+++. .. ++...+..+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl-GA------------~~v~i~~~e~~~~~~gya~ 228 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM-GA------------EFLELDFEEEGGSGDGYAK 228 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CC------------eEEEeccccccccccchhh
Confidence 45789999999997 6667766665444799999999999998873 21 111111110
Q ss_pred -C------------CCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 224 -F------------TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 224 -~------------~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+ ....+.+|+||..-....-+ .+..+.+++.+.+||||.++...
T Consensus 229 ~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~--aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 229 VMSEEFIKAEMALFAEQAKEVDIIITTALIPGKP--APKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred hcchhHHHHHHHHHHhccCCCCEEEECCCCCccc--CcchHHHHHHHhcCCCCEEEEEc
Confidence 0 00013589999765543221 23334599999999999988754
No 281
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=94.85 E-value=0.039 Score=53.48 Aligned_cols=102 Identities=14% Similarity=0.151 Sum_probs=72.6
Q ss_pred CCCcEEEEeccccHHHHHHHHh--CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCc-ceeEEEcCCCCCC-CCCCcee
Q 018970 157 QHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHK-ATNFFCVPLQDFT-PETGRYD 232 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~--~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~-~~~~~fD 232 (348)
.+.+|||.=+|+|.=+..++.. +...|++.|+|+++++..++++.-.++ .. .+.+...|+..+- .....||
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~-----~~~~~~v~~~DAn~ll~~~~~~fD 123 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL-----EDERIEVSNMDANVLLYSRQERFD 123 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT------SGCCEEEEES-HHHHHCHSTT-EE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc-----cCceEEEehhhHHHHhhhccccCC
Confidence 4568999999999887777766 345899999999999999999765444 22 4778887877643 1347899
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+|=. .-+. .+..||..+.+.++.||+|.++.
T Consensus 124 ~IDl----DPfG--Sp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 124 VIDL----DPFG--SPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp EEEE------SS----HHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEe----CCCC--CccHhHHHHHHHhhcCCEEEEec
Confidence 9864 2222 56789999999999999999974
No 282
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=94.85 E-value=0.014 Score=53.56 Aligned_cols=112 Identities=17% Similarity=0.156 Sum_probs=66.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHH-hCCCCCC---CcCCCcceeEEEcCCCCCCC-CCC-
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARES-LAPENHM---APDMHKATNFFCVPLQDFTP-ETG- 229 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~-~~~~~~~---~~~~~~~i~~~~~d~~~~~~-~~~- 229 (348)
..+.+|||+|||.|...+.....+...++..|.|...++...-. +.-.... ..+...-......++.++.. ..+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 45679999999999988887767755688889888877422110 0000000 00001111222221112221 113
Q ss_pred -ceeEEeechhhhcCChhhHHHH-HHHHHHcCCCCcEEEEEe
Q 018970 230 -RYDVIWVQWCIGHLTDDDFVSF-FKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 230 -~fD~Ii~~~~l~~~~~~d~~~~-l~~~~~~LkpgG~lii~~ 269 (348)
.||+|.++.++.... ....+ ......+++++|.+++..
T Consensus 195 ~~ydlIlsSetiy~~~--~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 195 THYDLILSSETIYSID--SLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred cchhhhhhhhhhhCcc--hhhhhHhhhhhhcCCccchhhhhh
Confidence 799999999988766 44444 566677788999888753
No 283
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.84 E-value=0.068 Score=50.77 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=39.6
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhC---------CCcEEEEcCCHHHHHHHHHHhCC
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRY---------FNEVDLLEPVSHFLDAARESLAP 202 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~---------~~~v~~vD~S~~~l~~a~~~~~~ 202 (348)
.+.+..++|+|+|+|.++..++... ...+..+|+|+.....-++.++.
T Consensus 75 ~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 75 RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 4556789999999999998887642 22899999999999888888765
No 284
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.82 E-value=0.12 Score=46.04 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=52.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHh--CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-----CCCCC
Q 018970 156 NQHLVALDCGSGIGRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-----FTPET 228 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~--~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-----~~~~~ 228 (348)
++..++||||.|---+--.+--+ +. ..+|.|+++..++.|+..+... ..+...+......-.+ .....
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N----~~l~~~I~lr~qk~~~~if~giig~n 151 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISAN----PGLERAIRLRRQKDSDAIFNGIIGKN 151 (292)
T ss_pred cCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcC----cchhhheeEEeccCcccccccccccc
Confidence 46778999999865432222212 33 5999999999999999887653 1113334444332111 11224
Q ss_pred CceeEEeechhhhc
Q 018970 229 GRYDVIWVQWCIGH 242 (348)
Q Consensus 229 ~~fD~Ii~~~~l~~ 242 (348)
+.||++.|+..||.
T Consensus 152 E~yd~tlCNPPFh~ 165 (292)
T COG3129 152 ERYDATLCNPPFHD 165 (292)
T ss_pred ceeeeEecCCCcch
Confidence 68999999999995
No 285
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=94.82 E-value=0.42 Score=40.80 Aligned_cols=129 Identities=18% Similarity=0.170 Sum_probs=74.9
Q ss_pred EEeccccHHHHHHHHhCC-C-cEEE--EcCCHHHHHHHH---HHhCCCCCCCcCCCcceeEEEcCCCCCCC----CCCce
Q 018970 163 DCGSGIGRITKNLLIRYF-N-EVDL--LEPVSHFLDAAR---ESLAPENHMAPDMHKATNFFCVPLQDFTP----ETGRY 231 (348)
Q Consensus 163 DvGcG~G~~~~~la~~~~-~-~v~~--vD~S~~~l~~a~---~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~~~f 231 (348)
=||=|.=.++..|+.... . .+++ .|......+.-. +++....- ....-.+..|+.++.. ..+.|
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-----~g~~V~~~VDat~l~~~~~~~~~~F 76 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-----LGVTVLHGVDATKLHKHFRLKNQRF 76 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-----cCCccccCCCCCcccccccccCCcC
Confidence 366677777788877644 2 4444 443333322211 22211100 1112334557766552 34789
Q ss_pred eEEeechhhhcCC----h-------hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcC
Q 018970 232 DVIWVQWCIGHLT----D-------DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCG 300 (348)
Q Consensus 232 D~Ii~~~~l~~~~----~-------~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aG 300 (348)
|.|+.+....--. . .=+..|++.+..+|+++|.+.|+-...+. ++.=.+.++.+++|
T Consensus 77 DrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p------------y~~W~i~~lA~~~g 144 (166)
T PF10354_consen 77 DRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP------------YDSWNIEELAAEAG 144 (166)
T ss_pred CEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC------------CccccHHHHHHhcC
Confidence 9999876633200 1 12567999999999999999998643321 12223678899999
Q ss_pred CeEEEEee
Q 018970 301 LHIYKSKD 308 (348)
Q Consensus 301 f~~v~~~~ 308 (348)
|.++....
T Consensus 145 l~l~~~~~ 152 (166)
T PF10354_consen 145 LVLVRKVP 152 (166)
T ss_pred CEEEEEec
Confidence 99987653
No 286
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=94.77 E-value=0.063 Score=52.44 Aligned_cols=117 Identities=19% Similarity=0.191 Sum_probs=71.1
Q ss_pred CCCCcEEEEeccccHH--HHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-CCCce
Q 018970 156 NQHLVALDCGSGIGRI--TKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-ETGRY 231 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~--~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~f 231 (348)
-.+..+.|+|.|.|.- +..++.+. ...++.||.|..|+........+....+..+..+..|+.. -++. ....|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~---~~pi~~~~~y 275 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQ---RLPIDIKNGY 275 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcc---cCCCCcccce
Confidence 3456788888886643 33333333 3389999999999999988776511111111111122221 1221 23569
Q ss_pred eEEeechhhhcCChh-hHH-HHHHHHHHcCCCCcEEEEEecccCCC
Q 018970 232 DVIWVQWCIGHLTDD-DFV-SFFKRAKVGLKPGGFFVLKENIARSG 275 (348)
Q Consensus 232 D~Ii~~~~l~~~~~~-d~~-~~l~~~~~~LkpgG~lii~~~~~~~~ 275 (348)
|+|++.+.++++... ... ..-..+....++||.+++.+.....+
T Consensus 276 Dlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g 321 (491)
T KOG2539|consen 276 DLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTMG 321 (491)
T ss_pred eeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCccc
Confidence 999999999998752 222 23445566778999999988654433
No 287
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.70 E-value=0.67 Score=41.72 Aligned_cols=143 Identities=15% Similarity=0.013 Sum_probs=82.3
Q ss_pred CCccCCCCCcEEEEeccccHHHHHHHHh-CCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---
Q 018970 151 PNARNNQHLVALDCGSGIGRITKNLLIR-YFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--- 225 (348)
Q Consensus 151 ~~~~~~~~~~VLDvGcG~G~~~~~la~~-~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--- 225 (348)
.+..++++.+||-+|+++|+...++.+- ++. -|++++.|+..-...-..+.+ ..|+--+..|+..-.
T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--------RtNiiPIiEDArhP~KYR 221 (317)
T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--------RTNIIPIIEDARHPAKYR 221 (317)
T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--------cCCceeeeccCCCchhee
Confidence 3345789999999999999987777644 333 689999987654444333332 234545555654311
Q ss_pred CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec--ccCCCceecCCCCceecCHHHH---HHHHHhcC
Q 018970 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN--IARSGFVLDKEDRSITRSDFYF---KELFSRCG 300 (348)
Q Consensus 226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~--~~~~~~~~d~~~~~~~~s~~~l---~~l~~~aG 300 (348)
..-+-.|+|++--. +++....+.-++...||+||-++|+-. +..... .....+ .+.|++--
T Consensus 222 mlVgmVDvIFaDva----qpdq~RivaLNA~~FLk~gGhfvisikancidstv----------~ae~vFa~Ev~klqee~ 287 (317)
T KOG1596|consen 222 MLVGMVDVIFADVA----QPDQARIVALNAQYFLKNGGHFVISIKANCIDSTV----------FAEAVFAAEVKKLQEEQ 287 (317)
T ss_pred eeeeeEEEEeccCC----CchhhhhhhhhhhhhhccCCeEEEEEecccccccc----------cHHHHHHHHHHHHHHhc
Confidence 11134677765322 112344455678889999999998742 221111 111111 34556656
Q ss_pred CeEEEEeecCCCCcc
Q 018970 301 LHIYKSKDQKGLPEE 315 (348)
Q Consensus 301 f~~v~~~~~~~~~~~ 315 (348)
++..+....++|..+
T Consensus 288 lkP~EqvtLEP~erd 302 (317)
T KOG1596|consen 288 LKPKEQVTLEPFERD 302 (317)
T ss_pred cCchheeccccccCC
Confidence 776665555555443
No 288
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.70 E-value=0.17 Score=47.49 Aligned_cols=146 Identities=17% Similarity=0.135 Sum_probs=90.6
Q ss_pred cEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CCCCceeEEee
Q 018970 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PETGRYDVIWV 236 (348)
Q Consensus 160 ~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~~~~fD~Ii~ 236 (348)
+++|+=||.|.++..+...++..+.++|+++.+.+.-+.++. .....|+.++. .+. .+|+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------------~~~~~Di~~~~~~~l~~-~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------------EVICGDITEIDPSDLPK-DVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------------EEEESHGGGCHHHHHHH-T-SEEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------------ccccccccccccccccc-cceEEEe
Confidence 689999999999999988888889999999999999888873 45667777765 222 5999996
Q ss_pred chhhhcC---------Ch--hhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970 237 QWCIGHL---------TD--DDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYK 305 (348)
Q Consensus 237 ~~~l~~~---------~~--~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~ 305 (348)
......+ .| ..+-.-+-++...++| .+++.||+..-. ..........+.+.|++.||.+..
T Consensus 68 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~P--k~~~~ENV~~l~------~~~~~~~~~~i~~~l~~lGY~v~~ 139 (335)
T PF00145_consen 68 GPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKP--KYFLLENVPGLL------SSKNGEVFKEILEELEELGYNVQW 139 (335)
T ss_dssp E---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS---SEEEEEEEGGGG------TGGGHHHHHHHHHHHHHTTEEEEE
T ss_pred ccCCceEeccccccccccccchhhHHHHHHHhhccc--eEEEecccceee------ccccccccccccccccccceeehh
Confidence 5433322 11 1122223344455678 456667764211 000002345678889999999766
Q ss_pred Eee---cCCCCccceEEEEEEEeec
Q 018970 306 SKD---QKGLPEELFAVKMYALTAE 327 (348)
Q Consensus 306 ~~~---~~~~~~~l~~v~~~~l~~~ 327 (348)
... ..+.|..--.+.+.+.+.-
T Consensus 140 ~vlna~~yGvPQ~R~R~fivg~r~~ 164 (335)
T PF00145_consen 140 RVLNAADYGVPQNRERVFIVGIRKD 164 (335)
T ss_dssp EEEEGGGGTSSBE-EEEEEEEEEGG
T ss_pred ccccHhhCCCCCceeeEEEEEECCC
Confidence 443 3467776556666666643
No 289
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.66 E-value=0.077 Score=49.62 Aligned_cols=100 Identities=19% Similarity=0.121 Sum_probs=65.4
Q ss_pred ccCCCCCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc--CCCCCC---
Q 018970 153 ARNNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQDFT--- 225 (348)
Q Consensus 153 ~~~~~~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~--d~~~~~--- 225 (348)
.+.+.+.+||-+|+|+ |.++...++. +...|..+|.++.-++.|++ +.... +..... +..++.
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~---------~~~~~~~~~~~~~~~~v 234 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATV---------TDPSSHKSSPQELAELV 234 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeE---------EeeccccccHHHHHHHH
Confidence 4578899999999997 5556555544 45589999999999999998 54311 111111 011110
Q ss_pred ---CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970 226 ---PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (348)
Q Consensus 226 ---~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~ 270 (348)
.....+|+.+-+..++ ..++.....+++||.+++...
T Consensus 235 ~~~~g~~~~d~~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 235 EKALGKKQPDVTFDCSGAE--------VTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred HhhccccCCCeEEEccCch--------HHHHHHHHHhccCCEEEEecc
Confidence 1123588888665544 455667788999999877653
No 290
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=94.53 E-value=0.073 Score=49.92 Aligned_cols=75 Identities=19% Similarity=0.183 Sum_probs=53.2
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----C-C
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-E 227 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-~ 227 (348)
+.++..++|+--|.|..+..++++... .|+++|.++.+++.|++++... ..++.+...++.++. . .
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~-------~~r~~~~~~~F~~l~~~l~~~~~ 90 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF-------DDRFIFIHGNFSNLDEYLKELNG 90 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC-------CTTEEEEES-GGGHHHHHHHTTT
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc-------cceEEEEeccHHHHHHHHHHccC
Confidence 567789999999999999999987554 8999999999999999887643 456888887776653 2 2
Q ss_pred CCceeEEee
Q 018970 228 TGRYDVIWV 236 (348)
Q Consensus 228 ~~~fD~Ii~ 236 (348)
...+|.|++
T Consensus 91 ~~~~dgiL~ 99 (310)
T PF01795_consen 91 INKVDGILF 99 (310)
T ss_dssp TS-EEEEEE
T ss_pred CCccCEEEE
Confidence 346777773
No 291
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.51 E-value=0.35 Score=45.71 Aligned_cols=145 Identities=18% Similarity=0.171 Sum_probs=88.2
Q ss_pred EEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-CCceeEEeechh
Q 018970 161 ALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIWVQWC 239 (348)
Q Consensus 161 VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~Ii~~~~ 239 (348)
|+|+=||.|.++..+...++.-+.++|+++..++.-+.++.. .+...|+.++... -..+|+++....
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~------------~~~~~Di~~~~~~~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN------------KVPFGDITKISPSDIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC------------CCCccChhhhhhhhCCCcCEEEecCC
Confidence 689999999999999878887778899999999998888753 2233565554421 135799986433
Q ss_pred hhcCC--------hhhHHHHHH---HHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEee
Q 018970 240 IGHLT--------DDDFVSFFK---RAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKD 308 (348)
Q Consensus 240 l~~~~--------~~d~~~~l~---~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~ 308 (348)
...+. ++....++. ++.+.++| .+++.||+..--. . .. ......+.+.|+..||.+.....
T Consensus 69 Cq~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P--~~~v~ENV~~l~~---~-~~--~~~~~~i~~~l~~~GY~v~~~~l 140 (315)
T TIGR00675 69 CQPFSIAGKRKGFEDTRGTLFFEIVRILKEKKP--KFFLLENVKGLVS---H-DK--GRTFKVIIETLEELGYKVYYKVL 140 (315)
T ss_pred CcccchhcccCCCCCchhhHHHHHHHHHhhcCC--CEEEeeccHHHHh---c-cc--chHHHHHHHHHHhCCCEEEEEEE
Confidence 22221 011112233 33344566 4777787653110 0 00 12235678888999999766443
Q ss_pred ---cCCCCccceEEEEEEEe
Q 018970 309 ---QKGLPEELFAVKMYALT 325 (348)
Q Consensus 309 ---~~~~~~~l~~v~~~~l~ 325 (348)
..+.|..--.+.+.+.+
T Consensus 141 ~a~dyGvPQ~R~R~f~ia~r 160 (315)
T TIGR00675 141 NAKDFGVPQNRERIYIVGFR 160 (315)
T ss_pred cHHHCCCCCCccEEEEEEEe
Confidence 34567665555555554
No 292
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.39 E-value=0.042 Score=49.37 Aligned_cols=83 Identities=14% Similarity=0.190 Sum_probs=47.7
Q ss_pred CcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhC---CCCCCCcCCCcceeEEEcCCCCC-CCCCCceeEE
Q 018970 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLA---PENHMAPDMHKATNFFCVPLQDF-TPETGRYDVI 234 (348)
Q Consensus 159 ~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~---~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~I 234 (348)
.+|||+-+|-|..+.-++..+. +|+++|-||-+....++-+. ...........+++++.+|..++ ..++.+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 3899999999999998876666 59999999987666553221 11100011235799999998874 3345799999
Q ss_pred eechhhhc
Q 018970 235 WVQWCIGH 242 (348)
Q Consensus 235 i~~~~l~~ 242 (348)
++-.+|.+
T Consensus 156 Y~DPMFp~ 163 (234)
T PF04445_consen 156 YFDPMFPE 163 (234)
T ss_dssp EE--S---
T ss_pred EECCCCCC
Confidence 99888776
No 293
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.12 E-value=0.036 Score=46.60 Aligned_cols=130 Identities=17% Similarity=0.203 Sum_probs=76.5
Q ss_pred CCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHH-HHHHHhCCCCCCCcCCCcceeEEEcCCC-CCCCCCCceeEEe
Q 018970 158 HLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLD-AARESLAPENHMAPDMHKATNFFCVPLQ-DFTPETGRYDVIW 235 (348)
Q Consensus 158 ~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~-~a~~~~~~~~~~~~~~~~~i~~~~~d~~-~~~~~~~~fD~Ii 235 (348)
+.++|-+|+..=.+-...++.+...|.-+|.++--++ ..+.++ ..+...|+. ++..-.++||++.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~-------------ssi~p~df~~~~~~y~~~fD~~a 68 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL-------------SSILPVDFAKNWQKYAGSFDFAA 68 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc-------------ccccHHHHHHHHHHhhccchhhh
Confidence 3577888888766655555667777888876542111 011111 111111111 1111237899999
Q ss_pred echhhhcCC----------hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970 236 VQWCIGHLT----------DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYK 305 (348)
Q Consensus 236 ~~~~l~~~~----------~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~ 305 (348)
+..+++|+. ..| ...+.++.++|||||.|++.-++..+...+.. +. .+....+..+|. ||+.+.
T Consensus 69 s~~siEh~GLGRYGDPidp~Gd-l~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNa--hR-iYg~~rL~mm~~--gfe~i~ 142 (177)
T PF03269_consen 69 SFSSIEHFGLGRYGDPIDPIGD-LRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNA--HR-IYGPIRLAMMFY--GFEWID 142 (177)
T ss_pred eechhccccccccCCCCCcccc-HHHHHHHHHhhccCCeEEEEeecCCcceEEec--ce-eecHhHHHHHhC--CcEEEe
Confidence 999999872 122 45678999999999999999877654332221 11 134445555554 788777
Q ss_pred E
Q 018970 306 S 306 (348)
Q Consensus 306 ~ 306 (348)
.
T Consensus 143 t 143 (177)
T PF03269_consen 143 T 143 (177)
T ss_pred e
Confidence 4
No 294
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.06 E-value=0.58 Score=44.51 Aligned_cols=145 Identities=17% Similarity=0.109 Sum_probs=95.6
Q ss_pred CcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCC--C-ceeEEe
Q 018970 159 LVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPET--G-RYDVIW 235 (348)
Q Consensus 159 ~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--~-~fD~Ii 235 (348)
.+++|+=||.|.+...+...+++-+.++|+++..++.-+.++.. ..+...|+..+.... . .+|+|+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----------~~~~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----------GDIILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----------CceeechHhhcChhhccccCCCEEE
Confidence 57999999999999999888888899999999999988888753 234445555443221 2 789999
Q ss_pred echhhhcCCh-------hh----HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEE
Q 018970 236 VQWCIGHLTD-------DD----FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIY 304 (348)
Q Consensus 236 ~~~~l~~~~~-------~d----~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v 304 (348)
.......+.- +| +.--+.++...++| .+++.||+..--.. .....+.+.+.|++.||.+.
T Consensus 73 gGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~~-------~~~~~~~i~~~L~~~GY~~~ 143 (328)
T COG0270 73 GGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLSS-------KGQTFDEIKKELEELGYGVE 143 (328)
T ss_pred eCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHhc-------CchHHHHHHHHHHHcCCcch
Confidence 7554444321 11 22345566667788 77788877531111 22356789999999999733
Q ss_pred E---EeecCCCCccceEEEEEE
Q 018970 305 K---SKDQKGLPEELFAVKMYA 323 (348)
Q Consensus 305 ~---~~~~~~~~~~l~~v~~~~ 323 (348)
. .....+.|..--.+.+..
T Consensus 144 ~~ilna~dyGvPQ~ReRvfiig 165 (328)
T COG0270 144 FNILNAADYGVPQSRERVFIVG 165 (328)
T ss_pred HheeeHHhcCCCCCccEEEEEE
Confidence 3 233456676644444443
No 295
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.93 E-value=0.22 Score=48.23 Aligned_cols=105 Identities=19% Similarity=0.145 Sum_probs=66.8
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcC-C----CCCCCC
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-L----QDFTPE 227 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d-~----~~~~~~ 227 (348)
..++.+||.+|||. |..+..+++.... .+++++.++.+++.+++.... ..+.+...+ + .++. .
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~---------~vi~~~~~~~~~~~l~~~~-~ 251 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA---------ETINFEEVDDVVEALRELT-G 251 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc---------EEEcCCcchHHHHHHHHHc-C
Confidence 56678999999998 8888888877554 599999999999998875321 011111111 0 1111 1
Q ss_pred CCceeEEeechhh-----------hcC--ChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 228 TGRYDVIWVQWCI-----------GHL--TDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 228 ~~~fD~Ii~~~~l-----------~~~--~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
...+|+|+-.-.- .|. +..+....+..+.+.|+|+|.+++..
T Consensus 252 ~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 2358988764211 111 00123467888999999999998864
No 296
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.88 E-value=0.3 Score=46.45 Aligned_cols=97 Identities=20% Similarity=0.137 Sum_probs=60.0
Q ss_pred CCCCcEEEEeccc-cHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 156 NQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 156 ~~~~~VLDvGcG~-G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
.++.+||-.|||. |.++..++... ...|+++|.+++.++.+++. ... .-++....++.++....+.+|+
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga~--------~vi~~~~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GAD--------KLVNPQNDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CCc--------EEecCCcccHHHHhccCCCCCE
Confidence 4577899999874 66666666553 43689999999999988763 211 0111111122222211245898
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
|+-.-. . ...+..+.++|++||.+++..
T Consensus 239 vid~~G-------~-~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 239 SFEVSG-------H-PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EEECCC-------C-HHHHHHHHHHhhcCCEEEEEc
Confidence 875422 1 135677888999999998865
No 297
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=93.66 E-value=2.7 Score=42.32 Aligned_cols=109 Identities=14% Similarity=0.068 Sum_probs=68.7
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhC---C--CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRY---F--NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---- 225 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~---~--~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---- 225 (348)
+.+..+|.|-.||+|.+........ . ..++|.|+++.....|+-+.--+|... .+.....|-..-+
T Consensus 184 ~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-----~~~i~~~dtl~~~~~~~ 258 (489)
T COG0286 184 PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-----DANIRHGDTLSNPKHDD 258 (489)
T ss_pred CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-----cccccccccccCCcccc
Confidence 3456699999999998876554332 1 358999999999999988765433321 1122222211111
Q ss_pred -CCCCceeEEeechhhhc---------------------CC-h-hhHHHHHHHHHHcCCCCcEEEEE
Q 018970 226 -PETGRYDVIWVQWCIGH---------------------LT-D-DDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 226 -~~~~~fD~Ii~~~~l~~---------------------~~-~-~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
...+.||.|+++..+.- ++ . .....+++.+...|+|||...|.
T Consensus 259 ~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 259 KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 12367999998766640 00 0 11267899999999999865554
No 298
>PRK10458 DNA cytosine methylase; Provisional
Probab=93.56 E-value=2.7 Score=42.02 Aligned_cols=45 Identities=18% Similarity=0.035 Sum_probs=38.8
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHh
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~ 200 (348)
....+++|+=||.|.+...+-..++..|.++|+++.+.+.-+.++
T Consensus 86 ~~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 86 HYAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CCCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 335699999999999999987778877899999999888877776
No 299
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=93.36 E-value=0.32 Score=45.50 Aligned_cols=116 Identities=14% Similarity=0.201 Sum_probs=75.9
Q ss_pred CCCcEEEEeccccHHHHHHHHhC-------C--------------CcEEEEcCCHH--HHHHHHHHhCCCC---------
Q 018970 157 QHLVALDCGSGIGRITKNLLIRY-------F--------------NEVDLLEPVSH--FLDAARESLAPEN--------- 204 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~-------~--------------~~v~~vD~S~~--~l~~a~~~~~~~~--------- 204 (348)
+..+||.||.|-|.=...++... . -.|+++|+.+- .++.....+....
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 34799999999987555555433 0 06889997653 4454444444320
Q ss_pred -C-CCcCCCcceeEEEcCCCCCCCCC-------CceeEEeechhhhcCC---hhhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970 205 -H-MAPDMHKATNFFCVPLQDFTPET-------GRYDVIWVQWCIGHLT---DDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (348)
Q Consensus 205 -~-~~~~~~~~i~~~~~d~~~~~~~~-------~~fD~Ii~~~~l~~~~---~~d~~~~l~~~~~~LkpgG~lii~~~~~ 272 (348)
+ ....-.-++.|.+.|+..+..++ ...|+|...+++.-+= .....+||.++...++||..|+|.|...
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 0 11112347889999998876431 2478888776665331 1356789999999999999999998543
No 300
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.33 E-value=0.51 Score=49.33 Aligned_cols=132 Identities=14% Similarity=0.140 Sum_probs=76.0
Q ss_pred CCCCcEEEEeccccHHHHHHHHhC-------C-----C-cEEEEcCCH---HHHHHHH-----------HHhCCCCCCCc
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRY-------F-----N-EVDLLEPVS---HFLDAAR-----------ESLAPENHMAP 208 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~-------~-----~-~v~~vD~S~---~~l~~a~-----------~~~~~~~~~~~ 208 (348)
.+.-+|||+|-|+|.......+.. + . +++.+|..| +.+..+- .....+.....
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 344789999999999766555322 2 1 688888543 3333322 11111100000
Q ss_pred C--------CCcceeEEEcCCCCCCC-CCCceeEEeec-hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCcee
Q 018970 209 D--------MHKATNFFCVPLQDFTP-ETGRYDVIWVQ-WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVL 278 (348)
Q Consensus 209 ~--------~~~~i~~~~~d~~~~~~-~~~~fD~Ii~~-~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~ 278 (348)
. -....+...+|+.+.-. -...+|+++.- ++-..-++=--..+++.++++++|||.+.-..
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t--------- 206 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT--------- 206 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee---------
Confidence 0 01244556667654321 12569999863 22223232113589999999999999986332
Q ss_pred cCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970 279 DKEDRSITRSDFYFKELFSRCGLHIYK 305 (348)
Q Consensus 279 d~~~~~~~~s~~~l~~l~~~aGf~~v~ 305 (348)
+...+++-|.++||++..
T Consensus 207 ---------~a~~vr~~l~~~GF~v~~ 224 (662)
T PRK01747 207 ---------SAGFVRRGLQEAGFTVRK 224 (662)
T ss_pred ---------hHHHHHHHHHHcCCeeee
Confidence 334588899999998764
No 301
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.21 E-value=0.72 Score=44.26 Aligned_cols=96 Identities=19% Similarity=0.164 Sum_probs=64.7
Q ss_pred CCCCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCC-C-----CCCC
Q 018970 156 NQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ-D-----FTPE 227 (348)
Q Consensus 156 ~~~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~-~-----~~~~ 227 (348)
.++.+|+-+|||+ |.++..+++. +...|+++|.++.-++.|++..... ....... + ....
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~------------~~~~~~~~~~~~~~~~~t 234 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD------------VVVNPSEDDAGAEILELT 234 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe------------EeecCccccHHHHHHHHh
Confidence 3444899999997 7777666655 3458999999999999999865431 1111111 0 0111
Q ss_pred C-CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970 228 T-GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (348)
Q Consensus 228 ~-~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 271 (348)
. ..+|+++-.-. . ...+..+.++++|||.+.+.-..
T Consensus 235 ~g~g~D~vie~~G---~-----~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 235 GGRGADVVIEAVG---S-----PPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCCCCCEEEECCC---C-----HHHHHHHHHHhcCCCEEEEEecc
Confidence 1 26999986444 1 24788999999999999986544
No 302
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=93.16 E-value=0.46 Score=41.92 Aligned_cols=105 Identities=10% Similarity=0.070 Sum_probs=55.2
Q ss_pred CCCcEEEEeccccHHHHHHHHh---C-C-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----C-
Q 018970 157 QHLVALDCGSGIGRITKNLLIR---Y-F-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----P- 226 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~---~-~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~- 226 (348)
++..|+|+|.-.|.-+..++.. . . ..|.++|++....+.. ..... ++..++++..+|-.+.. .
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~h-----p~~~rI~~i~Gds~d~~~~~~v~ 104 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESH-----PMSPRITFIQGDSIDPEIVDQVR 104 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG---------TTEEEEES-SSSTHHHHTSG
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhc-----cccCceEEEECCCCCHHHHHHHH
Confidence 3468999999999988777642 2 2 3899999954333221 11111 11367999999876642 0
Q ss_pred ---CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970 227 ---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (348)
Q Consensus 227 ---~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 271 (348)
......+|+.- +- |.. ++....|+....++++|+++++.+..
T Consensus 105 ~~~~~~~~vlVilD-s~-H~~-~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 105 ELASPPHPVLVILD-SS-HTH-EHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp SS----SSEEEEES-S------SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred HhhccCCceEEEEC-CC-ccH-HHHHHHHHHhCccCCCCCEEEEEecc
Confidence 11233444432 22 222 25778888899999999999997643
No 303
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.11 E-value=0.28 Score=49.28 Aligned_cols=98 Identities=13% Similarity=0.138 Sum_probs=62.6
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC----------
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---------- 223 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~---------- 223 (348)
..++.+||-+|||. |..+..++......|+++|.++..++.++. +.. ++...|..+
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lGa------------~~v~v~~~e~g~~~~gYa~ 227 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MGA------------EFLELDFKEEGGSGDGYAK 227 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCC------------eEEecccccccccccccee
Confidence 34578999999997 566666665544469999999998888876 221 121222110
Q ss_pred -------------CCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970 224 -------------FTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (348)
Q Consensus 224 -------------~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii 267 (348)
+......+|+|+..-.+..-+ .+.-+.+++.+.+|||+.++-
T Consensus 228 ~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~--aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 228 VMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP--APKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred ecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC--CCeeehHHHHhhCCCCCEEEE
Confidence 111124689997765444322 333467888999999998774
No 304
>PRK13699 putative methylase; Provisional
Probab=93.09 E-value=0.34 Score=43.58 Aligned_cols=75 Identities=13% Similarity=0.022 Sum_probs=45.5
Q ss_pred EEEcCCCCC--CCCCCceeEEeechhhh----c-----CC----hhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecC
Q 018970 216 FFCVPLQDF--TPETGRYDVIWVQWCIG----H-----LT----DDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDK 280 (348)
Q Consensus 216 ~~~~d~~~~--~~~~~~fD~Ii~~~~l~----~-----~~----~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~ 280 (348)
++.+|..++ ..+++++|+|+...... + +. .+-...++.+++|+|||||.+++....
T Consensus 4 l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~--------- 74 (227)
T PRK13699 4 FILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW--------- 74 (227)
T ss_pred EEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc---------
Confidence 344444332 24456778777653321 0 00 022467899999999999988763211
Q ss_pred CCCceecCHHHHHHHHHhcCCeEEE
Q 018970 281 EDRSITRSDFYFKELFSRCGLHIYK 305 (348)
Q Consensus 281 ~~~~~~~s~~~l~~l~~~aGf~~v~ 305 (348)
.....+..+++++||.+..
T Consensus 75 ------~~~~~~~~al~~~GF~l~~ 93 (227)
T PRK13699 75 ------NRVDRFMAAWKNAGFSVVG 93 (227)
T ss_pred ------ccHHHHHHHHHHCCCEEee
Confidence 1123467788999998776
No 305
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.04 E-value=0.3 Score=45.54 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=73.0
Q ss_pred CCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 156 ~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
-++.+|.-||.|. |..+..++.-....|+.+|.|..-+......+.. +++..-.+..++...-..+|+|
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----------rv~~~~st~~~iee~v~~aDlv 235 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----------RVHTLYSTPSNIEEAVKKADLV 235 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----------eeEEEEcCHHHHHHHhhhccEE
Confidence 3456889999996 7778778766555799999999999888877743 4666665555554333578999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii 267 (348)
|..--+---. .+.-+.+++...||||+.++=
T Consensus 236 IgaVLIpgak--aPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 236 IGAVLIPGAK--APKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred EEEEEecCCC--CceehhHHHHHhcCCCcEEEE
Confidence 8654443333 567788999999999998774
No 306
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=91.69 E-value=0.12 Score=47.82 Aligned_cols=103 Identities=22% Similarity=0.145 Sum_probs=66.3
Q ss_pred CCcEEEEeccccHHHH-HHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970 158 HLVALDCGSGIGRITK-NLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (348)
Q Consensus 158 ~~~VLDvGcG~G~~~~-~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~ 236 (348)
+..|+|+=+|.|+++. .+...+...|.++|.+|..++..++++...+. ..+...+.+|-.. +-+....|-|..
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V-----~~r~~i~~gd~R~-~~~~~~AdrVnL 268 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV-----MDRCRITEGDNRN-PKPRLRADRVNL 268 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch-----HHHHHhhhccccc-cCccccchheee
Confidence 3689999999999999 66667888999999999999999998765322 1223333334222 222356777764
Q ss_pred chhhhcCChhhHHHHHHHHHHcCCC-Cc-EEEEEeccc
Q 018970 237 QWCIGHLTDDDFVSFFKRAKVGLKP-GG-FFVLKENIA 272 (348)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~~~Lkp-gG-~lii~~~~~ 272 (348)
. -+|. -++-.-.+.++||| || ++-|-+++.
T Consensus 269 G----LlPS--se~~W~~A~k~Lk~eggsilHIHenV~ 300 (351)
T KOG1227|consen 269 G----LLPS--SEQGWPTAIKALKPEGGSILHIHENVK 300 (351)
T ss_pred c----cccc--cccchHHHHHHhhhcCCcEEEEecccc
Confidence 3 3332 12333345667777 45 666666654
No 307
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=91.29 E-value=0.55 Score=41.55 Aligned_cols=128 Identities=15% Similarity=0.101 Sum_probs=69.9
Q ss_pred hHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCC---CcEEEEcCCHHHHHHHHHHhCCC---CCCC----
Q 018970 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPE---NHMA---- 207 (348)
Q Consensus 138 ~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~---~~v~~vD~S~~~l~~a~~~~~~~---~~~~---- 207 (348)
..+.+++.+.. .....+.++-|-.||.|++.--+.--+. ..|.+.|+++++++.|++|+.-. |+..
T Consensus 36 AsEi~qR~l~~----l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~e 111 (246)
T PF11599_consen 36 ASEIFQRALHY----LEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREE 111 (246)
T ss_dssp HHHHHHHHHCT----SSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHh----hcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHH
Confidence 33455555432 2235667999999999998654432222 28999999999999999865311 0000
Q ss_pred -----------------------------cCCCcceeEEEcCCCCCCC-----CCCceeEEeechhhhcCCh-------h
Q 018970 208 -----------------------------PDMHKATNFFCVPLQDFTP-----ETGRYDVIWVQWCIGHLTD-------D 246 (348)
Q Consensus 208 -----------------------------~~~~~~i~~~~~d~~~~~~-----~~~~fD~Ii~~~~l~~~~~-------~ 246 (348)
........+.+.|+.+... .....|+|+.--...++++ +
T Consensus 112 L~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~ 191 (246)
T PF11599_consen 112 LRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGG 191 (246)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCC
Confidence 0011235677778877321 1234699998666555542 1
Q ss_pred hHHHHHHHHHHcCCCCcEEEEEe
Q 018970 247 DFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 247 d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
-...+|..++.+|.+++++.+++
T Consensus 192 p~~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 192 PVAQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp HHHHHHHHHHCCS-TT-EEEEEE
T ss_pred cHHHHHHHHHhhCCCCcEEEEec
Confidence 25679999999995566666644
No 308
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=90.96 E-value=2.1 Score=39.97 Aligned_cols=94 Identities=22% Similarity=0.203 Sum_probs=60.9
Q ss_pred CCCCCcEEEEecc-ccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-C-----CCC
Q 018970 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-----TPE 227 (348)
Q Consensus 155 ~~~~~~VLDvGcG-~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-----~~~ 227 (348)
+.++.+||..|+| .|..+..++......|++++.++...+.+++. .- +....+-.. . ...
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~-g~------------~~~~~~~~~~~~~~~~~~~ 229 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL-GA------------DEVLNSLDDSPKDKKAAGL 229 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh-CC------------CEEEcCCCcCHHHHHHHhc
Confidence 5667789998877 47788888776544699999999999888552 11 111111110 0 112
Q ss_pred CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 228 TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 228 ~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
.+.+|+|+.+... ...++.+.+.|+++|.++...
T Consensus 230 ~~~~D~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 230 GGGFDVIFDFVGT--------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred CCCceEEEECCCC--------HHHHHHHHHHhhcCCEEEEEC
Confidence 3568988753221 246778899999999998753
No 309
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=90.85 E-value=0.59 Score=44.74 Aligned_cols=43 Identities=21% Similarity=0.334 Sum_probs=35.2
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHH
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~ 198 (348)
.+-..|+|+|+|.|+++..+.-.+.-.|.++|-|....+.|++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 4456899999999999998875555589999999887777765
No 310
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=90.75 E-value=1.1 Score=38.87 Aligned_cols=104 Identities=13% Similarity=0.027 Sum_probs=72.1
Q ss_pred CCCcEEEEeccccHHHHHHHHh----CC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-----
Q 018970 157 QHLVALDCGSGIGRITKNLLIR----YF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----- 226 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~----~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----- 226 (348)
.+..|.|+|.-.|..+..++.. +- -.|.++|++-..++-+.... +.+.|+.++-.+...
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~-----------p~i~f~egss~dpai~eqi~ 137 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV-----------PDILFIEGSSTDPAIAEQIR 137 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC-----------CCeEEEeCCCCCHHHHHHHH
Confidence 4568999999999988877754 21 17999999877765543332 458899887665431
Q ss_pred --CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccC
Q 018970 227 --ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (348)
Q Consensus 227 --~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~ 273 (348)
..+.--+.++-.+-|++. ...+.++....+|..|-++++-+...+
T Consensus 138 ~~~~~y~kIfvilDsdHs~~--hvLAel~~~~pllsaG~Y~vVeDs~v~ 184 (237)
T COG3510 138 RLKNEYPKIFVILDSDHSME--HVLAELKLLAPLLSAGDYLVVEDSNVN 184 (237)
T ss_pred HHhcCCCcEEEEecCCchHH--HHHHHHHHhhhHhhcCceEEEeccccc
Confidence 112223444555666655 677888999999999999999875544
No 311
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.74 E-value=0.67 Score=44.24 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=72.6
Q ss_pred CCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-CCceeEEe
Q 018970 158 HLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (348)
Q Consensus 158 ~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~Ii 235 (348)
+.+|||-=+|+|.=++.++..... .|+.-|+||..++.+++++.... ..+......|...+-.. ...||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~------~~~~~v~n~DAN~lm~~~~~~fd~ID 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS------GEDAEVINKDANALLHELHRAFDVID 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC------cccceeecchHHHHHHhcCCCccEEe
Confidence 568999999999888877766544 79999999999999999986531 12333344555544322 36788774
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
. .-+. .+..|+..+.+.++.||++.++.
T Consensus 127 i----DPFG--SPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 127 I----DPFG--SPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred c----CCCC--CCchHHHHHHHHhhcCCEEEEEe
Confidence 2 2222 46789999999999999999964
No 312
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.54 E-value=0.45 Score=42.48 Aligned_cols=93 Identities=15% Similarity=0.169 Sum_probs=61.7
Q ss_pred CcEEEEeccccHHHHHHHHhCCC----------cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---
Q 018970 159 LVALDCGSGIGRITKNLLIRYFN----------EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--- 225 (348)
Q Consensus 159 ~~VLDvGcG~G~~~~~la~~~~~----------~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--- 225 (348)
.+++|+.+.+|.++.-|.++.+. .+++||+-+ |. .-..+.-+++|++...
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-Ma----------------PI~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MA----------------PIEGVIQLQGDITSASTAE 105 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CC----------------ccCceEEeecccCCHhHHH
Confidence 48999999999999877766433 278888632 11 0234566677877643
Q ss_pred -----CCCCceeEEeechh-----hhcCCh----hhHHHHHHHHHHcCCCCcEEEEE
Q 018970 226 -----PETGRYDVIWVQWC-----IGHLTD----DDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 226 -----~~~~~fD~Ii~~~~-----l~~~~~----~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
+.....|+|+|-.+ +|.+.. +-+..+|.-...+|||||.|+-.
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 33357899998543 443331 11456677788899999999863
No 313
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=90.30 E-value=1.7 Score=41.59 Aligned_cols=110 Identities=17% Similarity=0.056 Sum_probs=71.2
Q ss_pred cCCCCCcEEEEeccccHHHHHHHHhCCC-----cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--
Q 018970 154 RNNQHLVALDCGSGIGRITKNLLIRYFN-----EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-- 226 (348)
Q Consensus 154 ~~~~~~~VLDvGcG~G~~~~~la~~~~~-----~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-- 226 (348)
.+.++.+|||..+.+|.=+..+++.... .|.+-|.+..-+........... ..+..+...|+..++-
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~------~~~~~v~~~~~~~~p~~~ 225 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP------SPNLLVTNHDASLFPNIY 225 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC------Ccceeeecccceeccccc
Confidence 3789999999999999999888876442 58999999988887776653321 1223333334333331
Q ss_pred -------CCCceeEEeec-----h-hhhcCCh---------------hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 227 -------ETGRYDVIWVQ-----W-CIGHLTD---------------DDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 227 -------~~~~fD~Ii~~-----~-~l~~~~~---------------~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
....||-|.+- . ++.+.++ .-...++.+..++||+||.++.++
T Consensus 226 ~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYST 296 (375)
T KOG2198|consen 226 LKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYST 296 (375)
T ss_pred cccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEec
Confidence 12357877641 1 1111110 012457899999999999999875
No 314
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=89.86 E-value=1.7 Score=41.28 Aligned_cols=93 Identities=18% Similarity=0.084 Sum_probs=58.3
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHh--CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCce
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRY 231 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~--~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~f 231 (348)
..++.+||-+|||. |.++..++.+ +...|+++|.++.-++.+++ +.. . +. . .++.. ...+
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~-----------~-~~-~--~~~~~-~~g~ 223 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE-----------T-YL-I--DDIPE-DLAV 223 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc-----------e-ee-h--hhhhh-ccCC
Confidence 45678999999875 5555666654 23469999999988888864 211 0 00 0 11111 1248
Q ss_pred eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
|+|+-.-. .- .....+....++|++||.+++..
T Consensus 224 d~viD~~G--~~---~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 224 DHAFECVG--GR---GSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred cEEEECCC--CC---ccHHHHHHHHHhCcCCcEEEEEe
Confidence 98885322 10 01356788889999999998764
No 315
>PRK11524 putative methyltransferase; Provisional
Probab=89.47 E-value=0.36 Score=44.89 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=37.9
Q ss_pred ceeEEEcCCCCC--CCCCCceeEEeechhhhc------C----Ch----hhHHHHHHHHHHcCCCCcEEEEE
Q 018970 213 ATNFFCVPLQDF--TPETGRYDVIWVQWCIGH------L----TD----DDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 213 ~i~~~~~d~~~~--~~~~~~fD~Ii~~~~l~~------~----~~----~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
+..++++|..++ ..++++||+|++...+.- . .. +-+..++..+.++|||||.|++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 345677776663 244578999998654321 0 00 11357899999999999999985
No 316
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.38 E-value=0.55 Score=45.56 Aligned_cols=62 Identities=6% Similarity=0.159 Sum_probs=53.6
Q ss_pred cceeEEEcCCCCCC--CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccC
Q 018970 212 KATNFFCVPLQDFT--PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR 273 (348)
Q Consensus 212 ~~i~~~~~d~~~~~--~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~ 273 (348)
.++++++.++.+.. .+++++|.++......++++++..+.++++.+.++|||.+++-.....
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 57899999888753 346899999999999999999999999999999999999999765443
No 317
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=89.25 E-value=2 Score=40.97 Aligned_cols=97 Identities=23% Similarity=0.140 Sum_probs=58.1
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcC---CHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCc
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEP---VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGR 230 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~---S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 230 (348)
..++.+||-+|+|. |.++..+++.....|++++. ++.-++.+++. .. ..+.....+..+.. ..+.
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~-Ga---------~~v~~~~~~~~~~~-~~~~ 238 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL-GA---------TYVNSSKTPVAEVK-LVGE 238 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc-CC---------EEecCCccchhhhh-hcCC
Confidence 34677899999875 66777776654336888886 67777777643 21 00111111111101 1246
Q ss_pred eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (348)
Q Consensus 231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~ 270 (348)
+|+|+-.-. . ...+..+.++|++||.+++...
T Consensus 239 ~d~vid~~g-------~-~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 239 FDLIIEATG-------V-PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CCEEEECcC-------C-HHHHHHHHHHccCCcEEEEEec
Confidence 898886432 1 1366778899999999887543
No 318
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=88.77 E-value=0.33 Score=47.89 Aligned_cols=104 Identities=12% Similarity=0.084 Sum_probs=74.5
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC----CC
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP----ET 228 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~----~~ 228 (348)
..++.+|||.=|++|.-++..+..... .|++.|.++..++..++++.-.+. ...++....|+..+-. ..
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v-----~~ive~~~~DA~~lM~~~~~~~ 181 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV-----EDIVEPHHSDANVLMYEHPMVA 181 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc-----hhhcccccchHHHHHHhccccc
Confidence 356679999999999999888876444 899999999999999888765322 2223344445544321 23
Q ss_pred CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
..||+|-.- -.. ....||+.+.+.+..||.|+++.
T Consensus 182 ~~FDvIDLD----PyG--s~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 182 KFFDVIDLD----PYG--SPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred cccceEecC----CCC--CccHHHHHHHHHhhcCCEEEEEe
Confidence 579988642 111 35679999999999999999964
No 319
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=88.38 E-value=4.5 Score=38.20 Aligned_cols=92 Identities=13% Similarity=-0.072 Sum_probs=58.0
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
..++.+||-.|+|. |..+..+++.....|++++.+++-++.+++.-.+. + .+..+.. .+.+|+
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~------------v--i~~~~~~--~~~~d~ 226 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS------------A--GGAYDTP--PEPLDA 226 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce------------e--ccccccC--cccceE
Confidence 56788999999763 55566666554336999999988888887642210 0 1111111 135787
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~ 270 (348)
++..... ...+....++|++||.+++...
T Consensus 227 ~i~~~~~--------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 227 AILFAPA--------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred EEECCCc--------HHHHHHHHHhhCCCcEEEEEec
Confidence 6543221 1367788899999999988653
No 320
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.21 E-value=1.7 Score=42.59 Aligned_cols=88 Identities=14% Similarity=-0.004 Sum_probs=55.2
Q ss_pred CCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 156 ~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
-++.+|+-+|||+ |.....++......|+++|.++.-++.|+.. | .+. .++.+.. ...|+|
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~----G---------~~~--~~~~e~v---~~aDVV 261 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME----G---------YEV--MTMEEAV---KEGDIF 261 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc----C---------CEE--ccHHHHH---cCCCEE
Confidence 4678999999997 5555545544333699999999888777642 1 111 1111111 347999
Q ss_pred eechhhhcCChhhHHHHHHH-HHHcCCCCcEEEEEe
Q 018970 235 WVQWCIGHLTDDDFVSFFKR-AKVGLKPGGFFVLKE 269 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~-~~~~LkpgG~lii~~ 269 (348)
+..-. . ...+.. ..+.+|+||.++...
T Consensus 262 I~atG-------~-~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 262 VTTTG-------N-KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred EECCC-------C-HHHHHHHHHhcCCCCcEEEEeC
Confidence 86422 1 234444 588999999998764
No 321
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=87.79 E-value=7.6 Score=30.23 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=61.2
Q ss_pred ccccHHHHHHHHh---CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCceeEEeech
Q 018970 166 SGIGRITKNLLIR---YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDVIWVQW 238 (348)
Q Consensus 166 cG~G~~~~~la~~---~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~Ii~~~ 238 (348)
||.|.++..+++. ....|+++|.++..++.+++.. ..+..+|..+.. ..-...|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-------------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-------------VEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-------------SEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-------------cccccccchhhhHHhhcCccccCEEEEcc
Confidence 5556666666543 3336999999999988887642 567788887643 1224678777643
Q ss_pred hhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEE
Q 018970 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIY 304 (348)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v 304 (348)
. ++..--.+-...+-+.|...+++.-. .....+.|+++|...+
T Consensus 71 ~-----~d~~n~~~~~~~r~~~~~~~ii~~~~------------------~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 71 D-----DDEENLLIALLARELNPDIRIIARVN------------------DPENAELLRQAGADHV 113 (116)
T ss_dssp S-----SHHHHHHHHHHHHHHTTTSEEEEEES------------------SHHHHHHHHHTT-SEE
T ss_pred C-----CHHHHHHHHHHHHHHCCCCeEEEEEC------------------CHHHHHHHHHCCcCEE
Confidence 3 22223344455566677777766532 2235667777777654
No 322
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=87.63 E-value=3.1 Score=37.93 Aligned_cols=106 Identities=15% Similarity=0.210 Sum_probs=58.6
Q ss_pred CCCCcEEEEeccccHHHHHHH---HhC--C-CcEEEEcCCH--------------------------HHHHHHHHHhCCC
Q 018970 156 NQHLVALDCGSGIGRITKNLL---IRY--F-NEVDLLEPVS--------------------------HFLDAARESLAPE 203 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la---~~~--~-~~v~~vD~S~--------------------------~~l~~a~~~~~~~ 203 (348)
+-++.|+|+||=.|..+..++ ... . ..++++|.=. ..++..++++...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 345789999999998665442 221 1 1566665211 1355566666665
Q ss_pred CCCCcCCCcceeEEEcCCCC-CCC-CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 204 NHMAPDMHKATNFFCVPLQD-FTP-ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 204 ~~~~~~~~~~i~~~~~d~~~-~~~-~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
|+. ..++.++.+.+.+ ++. +...+-++.+-.-+. +.....|..++..|.|||+++|-+
T Consensus 153 gl~----~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY----esT~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 153 GLL----DDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY----ESTKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp TTS----STTEEEEES-HHHHCCC-TT--EEEEEE---SH----HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCC----cccEEEECCcchhhhccCCCccEEEEEEeccch----HHHHHHHHHHHhhcCCCeEEEEeC
Confidence 442 3478888887654 331 223443333322111 235678999999999999999876
No 323
>PTZ00357 methyltransferase; Provisional
Probab=87.55 E-value=2.2 Score=44.15 Aligned_cols=104 Identities=13% Similarity=0.058 Sum_probs=61.6
Q ss_pred CcEEEEeccccHHHHHHHHh----CCC-cEEEEcCCHHHHHHHHHHh-CCCCCCC--cCCCcceeEEEcCCCCCCCCC--
Q 018970 159 LVALDCGSGIGRITKNLLIR----YFN-EVDLLEPVSHFLDAARESL-APENHMA--PDMHKATNFFCVPLQDFTPET-- 228 (348)
Q Consensus 159 ~~VLDvGcG~G~~~~~la~~----~~~-~v~~vD~S~~~l~~a~~~~-~~~~~~~--~~~~~~i~~~~~d~~~~~~~~-- 228 (348)
..|+-+|+|-|-+....+.. +.. .|++||-++..+.....+. ....+.+ ...+..++++..|+.++..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 46899999999986655543 222 7999999966444443332 2111211 112345899999999986331
Q ss_pred ---------CceeEEee--chhhhcCChhhHHHHHHHHHHcCCC----CcE
Q 018970 229 ---------GRYDVIWV--QWCIGHLTDDDFVSFFKRAKVGLKP----GGF 264 (348)
Q Consensus 229 ---------~~fD~Ii~--~~~l~~~~~~d~~~~l~~~~~~Lkp----gG~ 264 (348)
+.+|+||+ -++|..-. =-.+-|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDNE--LSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDNE--LSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhccccccc--CCHHHHHHHHHhhhhhcccccc
Confidence 36999997 33433211 122445555666665 675
No 324
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=87.53 E-value=2.4 Score=39.80 Aligned_cols=96 Identities=22% Similarity=0.235 Sum_probs=58.2
Q ss_pred CCCcEEEEeccc-cHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 157 QHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 157 ~~~~VLDvGcG~-G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
++.+||-.|||. |..+..+++.. ...+++++.++...+.+++.-.+ ..+.....++..+....+.+|+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~---------~vi~~~~~~~~~~~~~~~~vd~v 235 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGAD---------ETVNLARDPLAAYAADKGDFDVV 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCC---------EEEcCCchhhhhhhccCCCccEE
Confidence 678899988876 66777777654 33689999998888866553111 00111111111222122458999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+..... ...++.+.+.|+++|.++...
T Consensus 236 ld~~g~--------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 236 FEASGA--------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EECCCC--------HHHHHHHHHHHhcCCEEEEEe
Confidence 864331 135677889999999988653
No 325
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=87.24 E-value=2.1 Score=38.35 Aligned_cols=98 Identities=20% Similarity=0.143 Sum_probs=60.1
Q ss_pred CCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-C-CCCCCcee
Q 018970 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGRYD 232 (348)
Q Consensus 156 ~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~fD 232 (348)
.++.+||..|+|. |..+..++.....+|++++.++...+.+++.-... .++....+... . ....+.+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~---------~~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADH---------VIDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCce---------eccCCcCCHHHHHHHhcCCCCC
Confidence 5678999999995 76777777665557999999988888775542110 00000000000 0 01125699
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~ 270 (348)
+|+.+..- ...+..+.+.|+++|.++....
T Consensus 204 ~vi~~~~~--------~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 204 VVIDAVGG--------PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EEEECCCC--------HHHHHHHHHhcccCCEEEEEcc
Confidence 99854221 1356677888999999887643
No 326
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.91 E-value=3.9 Score=32.50 Aligned_cols=86 Identities=14% Similarity=0.101 Sum_probs=57.4
Q ss_pred CCcEEEEecccc-HHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-CCceeEEe
Q 018970 158 HLVALDCGSGIG-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (348)
Q Consensus 158 ~~~VLDvGcG~G-~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~Ii 235 (348)
.++|+|||-|-= ..+..|++++++ |+++|+.+. +. ...+.+...|+.+-... -...|+|+
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~d-v~atDI~~~-------~a----------~~g~~~v~DDitnP~~~iY~~A~lIY 75 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFD-VLATDINEK-------TA----------PEGLRFVVDDITNPNISIYEGADLIY 75 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCc-EEEEecccc-------cC----------cccceEEEccCCCccHHHhhCcccee
Confidence 459999999864 467777777886 999999876 11 22477888888774421 13568888
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
+... +.++...+-.+.+.++- -+++.
T Consensus 76 SiRp-----ppEl~~~ildva~aVga--~l~I~ 101 (129)
T COG1255 76 SIRP-----PPELQSAILDVAKAVGA--PLYIK 101 (129)
T ss_pred ecCC-----CHHHHHHHHHHHHhhCC--CEEEE
Confidence 7544 23677777777776544 44444
No 327
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=84.86 E-value=4.8 Score=37.57 Aligned_cols=86 Identities=22% Similarity=0.144 Sum_probs=54.5
Q ss_pred CCCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 157 QHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 157 ~~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
++.+||-+|||. |.++..+++. +...|.++|.++..++.+.... .+ |..+. ....+|+|
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~------------~i-----~~~~~--~~~g~Dvv 204 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE------------VL-----DPEKD--PRRDYRAI 204 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc------------cc-----Chhhc--cCCCCCEE
Confidence 456899999874 7777777755 4445778898887776664310 01 11110 12468988
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+-+-. . ...+..+.++|++||.+++..
T Consensus 205 id~~G-------~-~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 205 YDASG-------D-PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred EECCC-------C-HHHHHHHHHhhhcCcEEEEEe
Confidence 85432 1 245677888999999999764
No 328
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=84.69 E-value=2.5 Score=37.07 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=38.7
Q ss_pred hHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHH
Q 018970 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (348)
Q Consensus 138 ~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~ 198 (348)
+..++.+++... ..++..|||.=||+|..+......+- ...|+|+++...+.|++
T Consensus 177 P~~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 177 PVELIERLIKAS-----TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -HHHHHHHHHHH-----S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHhh-----hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 345666665432 35788999999999999887654444 59999999999998864
No 329
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=84.63 E-value=2.8 Score=33.40 Aligned_cols=86 Identities=21% Similarity=0.136 Sum_probs=57.9
Q ss_pred cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------CCCCceeEEeechhh
Q 018970 167 GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PETGRYDVIWVQWCI 240 (348)
Q Consensus 167 G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~~~~fD~Ii~~~~l 240 (348)
|.|.++..+++....+|+++|.++.-++.+++.-.. .+...+-.++. .....+|+|+-+-.-
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~------------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD------------HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES------------EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc------------ccccccccccccccccccccccceEEEEecCc
Confidence 568888888877557899999999999999874211 12211111111 112479999864331
Q ss_pred hcCChhhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970 241 GHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (348)
Q Consensus 241 ~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~ 272 (348)
...++.+..+|+|+|.+++.....
T Consensus 69 --------~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 --------GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp --------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred --------HHHHHHHHHHhccCCEEEEEEccC
Confidence 257888999999999999986554
No 330
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=84.05 E-value=1.2 Score=39.55 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=47.7
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT 225 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~ 225 (348)
.-...-|.+||.|.|.+++.+++.+...+..++.++..+.-.+-..... .....++..|+..+.
T Consensus 48 ~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa-------~~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 48 NLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA-------PGKLRIHHGDVLRFK 111 (326)
T ss_pred ccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC-------CcceEEeccccceeh
Confidence 3445679999999999999999888888999999988877666544322 335666666765543
No 331
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=83.82 E-value=1.6 Score=42.34 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=54.0
Q ss_pred CCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 157 ~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
++.+|+=+|+|. |..+...+......|+++|.++.-++.+...+.. .+.....+..++...-..+|+|+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----------~v~~~~~~~~~l~~~l~~aDvVI 235 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----------RIHTRYSNAYEIEDAVKRADLLI 235 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----------eeEeccCCHHHHHHHHccCCEEE
Confidence 456799999984 6666665554333699999998877766555432 11111111111110113689999
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii 267 (348)
..-.+.-.+ .+.-+-+++.+.++||++++-
T Consensus 236 ~a~~~~g~~--~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 236 GAVLIPGAK--APKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred EccccCCCC--CCcCcCHHHHhcCCCCCEEEE
Confidence 753221110 111123556677899988775
No 332
>PRK11524 putative methyltransferase; Provisional
Probab=83.72 E-value=4.1 Score=37.82 Aligned_cols=59 Identities=17% Similarity=0.052 Sum_probs=45.4
Q ss_pred hHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCC
Q 018970 138 SEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (348)
Q Consensus 138 ~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~ 202 (348)
...++.+++... ..++..|||.=||+|..+.... +....+.|+|++++.++.|++++..
T Consensus 194 P~~L~erlI~~~-----S~~GD~VLDPF~GSGTT~~AA~-~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 194 PEALLKRIILAS-----SNPGDIVLDPFAGSFTTGAVAK-ASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred hHHHHHHHHHHh-----CCCCCEEEECCCCCcHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 345666665432 4678899999999999988655 4444699999999999999998753
No 333
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=83.11 E-value=1.2 Score=44.13 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=71.3
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC-------CCC
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF-------TPE 227 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~-------~~~ 227 (348)
+....+|-+|-|.|.+...+....+. .++++++.|.|++.|+.++.-.- ..+..++-.|..++ ..+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q------~~r~~V~i~dGl~~~~~~~k~~~~ 367 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ------SDRNKVHIADGLDFLQRTAKSQQE 367 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh------hhhhhhhHhhchHHHHHHhhcccc
Confidence 44567899999999998887656553 89999999999999999875310 01122222222221 123
Q ss_pred CCceeEEee----chhhhcCC--hhh--HHHHHHHHHHcCCCCcEEEEEecc
Q 018970 228 TGRYDVIWV----QWCIGHLT--DDD--FVSFFKRAKVGLKPGGFFVLKENI 271 (348)
Q Consensus 228 ~~~fD~Ii~----~~~l~~~~--~~d--~~~~l~~~~~~LkpgG~lii~~~~ 271 (348)
+..||++.. .. .|-++ ... -..++..+...|.|.|.+++--..
T Consensus 368 ~~~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~ 418 (482)
T KOG2352|consen 368 DICPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT 418 (482)
T ss_pred ccCCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEec
Confidence 457999884 22 33332 112 346899999999999999875433
No 334
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=82.82 E-value=9.9 Score=35.41 Aligned_cols=96 Identities=19% Similarity=0.106 Sum_probs=58.6
Q ss_pred CCCCCcEEEEecc-ccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 155 ~~~~~~VLDvGcG-~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
..++.+||-+||| .|..+..++......|++++.++..++.+++. ... .-+.....+... . ..+.+|+
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~-g~~--------~~~~~~~~~~~~-~-~~~~~d~ 228 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKL-GAD--------EVVDSGAELDEQ-A-AAGGADV 228 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-CCc--------EEeccCCcchHH-h-ccCCCCE
Confidence 5667889999987 67777777766444699999999888887542 210 000000000000 0 1245898
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
++....- ...+..+.+.|+++|.++...
T Consensus 229 vi~~~~~--------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 229 ILVTVVS--------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EEECCCc--------HHHHHHHHHhcccCCEEEEEC
Confidence 8753221 135677788999999888754
No 335
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=81.80 E-value=13 Score=35.45 Aligned_cols=99 Identities=16% Similarity=-0.045 Sum_probs=58.7
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CC--CCCC
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT--PETG 229 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~--~~~~ 229 (348)
..++.+||-.|||. |..+..+++.... .|+++|.++..++.+++.-.+ .-++....+..+ +. ....
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~---------~~i~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGAT---------HTVNSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc---------eEEcCCCcCHHHHHHHHhCCC
Confidence 56788999999864 5566666655433 599999999998888653111 001111111100 00 1113
Q ss_pred ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (348)
Q Consensus 230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~ 270 (348)
.+|+|+-.-. . ...+....+.|++||.+++...
T Consensus 245 g~d~vid~~g-------~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 245 GADVVIDAVG-------R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCEEEECCC-------C-HHHHHHHHHHhccCCEEEEECC
Confidence 5898875322 1 1356667789999999987643
No 336
>PRK13699 putative methylase; Provisional
Probab=81.50 E-value=5.9 Score=35.57 Aligned_cols=58 Identities=21% Similarity=0.153 Sum_probs=44.0
Q ss_pred HHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCC
Q 018970 139 EAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP 202 (348)
Q Consensus 139 ~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~ 202 (348)
..++..++... ..++..|||.=||+|..+......+- .+.|+|+++...+.+.+++..
T Consensus 150 ~~l~~~~i~~~-----s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 150 VTSLQPLIESF-----THPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHHHHh-----CCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 35555555321 35778999999999999887664444 599999999999999888753
No 337
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=81.33 E-value=6.5 Score=37.45 Aligned_cols=98 Identities=13% Similarity=0.038 Sum_probs=60.8
Q ss_pred CCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc-CCCC-C-CCCCC
Q 018970 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQD-F-TPETG 229 (348)
Q Consensus 155 ~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~ 229 (348)
+.++.+||=.|+ |.|.++..+++....+|++++.++...+.+++.+.. ..-++.... ++.+ + ....+
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa--------~~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF--------DEAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC--------CEEEECCCcccHHHHHHHHCCC
Confidence 567889999998 368888888866544699999998888877644332 111111110 1110 0 01123
Q ss_pred ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
.+|+|+-+-. . ..+..+.++|++||.+++..
T Consensus 228 gvD~v~d~vG-------~--~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 228 GIDIYFDNVG-------G--DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CcEEEEECCC-------H--HHHHHHHHHhccCCEEEEEC
Confidence 6898885322 1 35677888999999998754
No 338
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=81.16 E-value=12 Score=33.81 Aligned_cols=94 Identities=17% Similarity=-0.006 Sum_probs=57.9
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCCc-EEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCcee
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYD 232 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~-v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 232 (348)
..++.+||-.|||. |..+..+++..... |++++.+++.++.+++.-... .-+... . .. .....+|
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~--------~~~~~~-~---~~-~~~~~~d 161 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPAD--------PVAADT-A---DE-IGGRGAD 161 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCc--------cccccc-h---hh-hcCCCCC
Confidence 56778899998875 66666676664445 999999998888776541010 000000 0 01 1224689
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+|+..-.- ...+....+.|+++|.++...
T Consensus 162 ~vl~~~~~--------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 162 VVIEASGS--------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEEccCC--------hHHHHHHHHHhcCCcEEEEEe
Confidence 88853211 135677788899999988653
No 339
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=80.91 E-value=0.88 Score=44.20 Aligned_cols=64 Identities=13% Similarity=0.049 Sum_probs=50.2
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD 223 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~ 223 (348)
.+++..|.|+=||.|-++..++.++. .|++.|.++++++..+.+++-..+. ..++..+..|+.+
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~----~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVD----PSAIEIFNMDAKD 310 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccc----hhheeeecccHHH
Confidence 46788999999999999999998885 5999999999999999987653221 2336666665544
No 340
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=80.38 E-value=14 Score=35.38 Aligned_cols=99 Identities=17% Similarity=-0.035 Sum_probs=58.5
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CC-CCCCc
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FT-PETGR 230 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~-~~~~~ 230 (348)
+.++.+||-.|+|. |.++..+++. +...|+++|.++..++.+++.-... -++....++.+ +. ...+.
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~---------~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATA---------TVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCce---------EeCCCchhHHHHHHHHhCCC
Confidence 56778899999874 5566666655 3436999999999998886531110 01111111100 00 11235
Q ss_pred eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (348)
Q Consensus 231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~ 270 (348)
+|+|+-.-. . ...+..+.+.|+++|.+++...
T Consensus 260 ~d~vid~~G--~------~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 260 VDYAFEMAG--S------VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCEEEECCC--C------hHHHHHHHHHHhcCCEEEEEcc
Confidence 898885321 1 1356677788999999887543
No 341
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=80.00 E-value=5.3 Score=36.62 Aligned_cols=97 Identities=15% Similarity=0.033 Sum_probs=57.6
Q ss_pred CCCCcEEEEeccc-cHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc--CCCCCCCCCCce
Q 018970 156 NQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQDFTPETGRY 231 (348)
Q Consensus 156 ~~~~~VLDvGcG~-G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~--d~~~~~~~~~~f 231 (348)
.++.+||-+|+|. |.++..+++.. ...|+++|.++.-++.+++.-... -+..... .+.... ....+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~---------~i~~~~~~~~~~~~~-~~~g~ 188 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATA---------LAEPEVLAERQGGLQ-NGRGV 188 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcE---------ecCchhhHHHHHHHh-CCCCC
Confidence 4677899998864 55666666553 334889999998888877642110 0110000 000011 12358
Q ss_pred eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (348)
Q Consensus 232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~ 270 (348)
|+|+-.-. . ...++.+.+.|+|+|.+++...
T Consensus 189 d~vid~~G-------~-~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 189 DVALEFSG-------A-TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred CEEEECCC-------C-hHHHHHHHHHhcCCCEEEEecc
Confidence 98875322 0 2466778889999999988653
No 342
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=79.41 E-value=19 Score=33.82 Aligned_cols=98 Identities=20% Similarity=0.047 Sum_probs=57.2
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCCc-EEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCCCc
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PETGR 230 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~-v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~ 230 (348)
+.++.+||=+|+|. |..+..+++..... |++++.++..++.+++.-.. ..++....+...+. .....
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~---------~~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGAD---------FVINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC---------EEEcCCcchHHHHHHHhCCCC
Confidence 55678999998864 55556666554445 99999999988888653211 00111111100010 11236
Q ss_pred eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+|+|+-.-. . ...+....+.|+++|.+++..
T Consensus 232 ~d~vid~~g-------~-~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 232 ADVAIECSG-------N-TAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCEEEECCC-------C-HHHHHHHHHHhhcCCEEEEEc
Confidence 899885322 1 134566778899999998754
No 343
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=79.39 E-value=2 Score=39.98 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=41.4
Q ss_pred CceeEEee-chhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970 229 GRYDVIWV-QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYK 305 (348)
Q Consensus 229 ~~fD~Ii~-~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~ 305 (348)
+.||+|+. +.+.|++.++ +.++++|+|.|++-.. .+..+.......--.+.+.++.+++||+.+.
T Consensus 221 ~~Fd~ifvs~s~vh~L~p~--------l~~~~a~~A~LvvEta----KfmvdLrKEq~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 221 NFFDLIFVSCSMVHFLKPE--------LFQALAPDAVLVVETA----KFMVDLRKEQLQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred CCCCEEEEhhhhHhhcchH--------HHHHhCCCCEEEEEcc----hhheeCCHHHHHHHHHHHHHHHHHCCCcccc
Confidence 67999987 4556665522 6778899999888642 1222322222222235588999999998653
No 344
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=79.27 E-value=9 Score=35.57 Aligned_cols=88 Identities=18% Similarity=0.056 Sum_probs=56.2
Q ss_pred CcEEEEeccc--cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEE-cCCCCCCCCCCceeEE
Q 018970 159 LVALDCGSGI--GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDVI 234 (348)
Q Consensus 159 ~~VLDvGcG~--G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fD~I 234 (348)
.+|+=+|.|- |.+++.+...+.. .+++.|.+...++.+.+.- +.... .+.. .......|+|
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg-------------v~d~~~~~~~--~~~~~~aD~V 68 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG-------------VIDELTVAGL--AEAAAEADLV 68 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC-------------cccccccchh--hhhcccCCEE
Confidence 4678888774 5567777666666 5799999888887775431 11111 1110 1112457999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~li 266 (348)
+.+-.+. ....+++++...|++|..+.
T Consensus 69 ivavPi~-----~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 69 IVAVPIE-----ATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred EEeccHH-----HHHHHHHHhcccCCCCCEEE
Confidence 9877666 35578888888888876654
No 345
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=79.17 E-value=26 Score=31.18 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=65.4
Q ss_pred hhHHHHHHHHhhhcCCccCCCCCcEEEEeccccH--HHHHH--HHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCC
Q 018970 137 GSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGR--ITKNL--LIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMH 211 (348)
Q Consensus 137 ~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~--~~~~l--a~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~ 211 (348)
...+|+..+.. ..+...|+++.|+-|. .+..| +.+.- ..++++-+.+.-+...++.+.+.++ .
T Consensus 28 ~~aEfISAlAA-------G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~-----~ 95 (218)
T PF07279_consen 28 GVAEFISALAA-------GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL-----S 95 (218)
T ss_pred CHHHHHHHHhc-------cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc-----c
Confidence 34455555543 2334578999766442 23333 33322 2577777777777777777665443 2
Q ss_pred cceeEEEcCC-CCCCCCCCceeEEeechhhhcCChhhHH-HHHHHHHHcCCCCcEEEEEeccc
Q 018970 212 KATNFFCVPL-QDFTPETGRYDVIWVQWCIGHLTDDDFV-SFFKRAKVGLKPGGFFVLKENIA 272 (348)
Q Consensus 212 ~~i~~~~~d~-~~~~~~~~~fD~Ii~~~~l~~~~~~d~~-~~l~~~~~~LkpgG~lii~~~~~ 272 (348)
..++|..++. +++...-...|+++.-.-.. |.. .+|+.+. +.|.|-+++..|..
T Consensus 96 ~~vEfvvg~~~e~~~~~~~~iDF~vVDc~~~-----d~~~~vl~~~~--~~~~GaVVV~~Na~ 151 (218)
T PF07279_consen 96 DVVEFVVGEAPEEVMPGLKGIDFVVVDCKRE-----DFAARVLRAAK--LSPRGAVVVCYNAF 151 (218)
T ss_pred ccceEEecCCHHHHHhhccCCCEEEEeCCch-----hHHHHHHHHhc--cCCCceEEEEeccc
Confidence 3467777764 33322234678887533322 444 5555433 55678888877653
No 346
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=78.99 E-value=9.9 Score=35.07 Aligned_cols=85 Identities=15% Similarity=0.060 Sum_probs=52.8
Q ss_pred cEEEEeccc--cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (348)
Q Consensus 160 ~VLDvGcG~--G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~ 237 (348)
+|.=||+|. |.++..|...+. .|+++|.++..++.+.+.-. +.....+.+ . -...|+|+.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~------------~~~~~~~~~-~---~~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGL------------VDEASTDLS-L---LKDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC------------cccccCCHh-H---hcCCCEEEEc
Confidence 477789885 456666666655 59999999988887765310 111111111 1 1357999876
Q ss_pred hhhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (348)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~~~LkpgG~li 266 (348)
-... ....+++++...++|+..+.
T Consensus 65 vp~~-----~~~~~~~~l~~~l~~~~ii~ 88 (279)
T PRK07417 65 LPIG-----LLLPPSEQLIPALPPEAIVT 88 (279)
T ss_pred CCHH-----HHHHHHHHHHHhCCCCcEEE
Confidence 5533 34567788888888775443
No 347
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=78.91 E-value=16 Score=34.29 Aligned_cols=122 Identities=13% Similarity=0.072 Sum_probs=62.0
Q ss_pred CCCcEEEEeccc-cHHHHHHH-HhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEE-cCCCCCCCCCCceeE
Q 018970 157 QHLVALDCGSGI-GRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYDV 233 (348)
Q Consensus 157 ~~~~VLDvGcG~-G~~~~~la-~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fD~ 233 (348)
++.+|+-+|+|. |......+ ..+...|+.++.++.-.....+.++. .... .++.+. -..+|+
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~------------~~~~~~~~~~~---l~~aDv 241 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG------------NAVPLDELLEL---LNEADV 241 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC------------eEEeHHHHHHH---HhcCCE
Confidence 567999999985 44433333 33556799999987655433333321 1111 122111 135799
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCc-eecCCCCceecCHHHHHHHHHh
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGF-VLDKEDRSITRSDFYFKELFSR 298 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~-~~d~~~~~~~~s~~~l~~l~~~ 298 (348)
|++.-.-.+. ...+..+......+|.+++--..+.+-. .....+....++.+++.++.++
T Consensus 242 Vi~at~~~~~-----~~~~~~~~~~~~~~~~~viDlavPrdi~~~v~~l~~v~l~~vDdl~~~~~~ 302 (311)
T cd05213 242 VISATGAPHY-----AKIVERAMKKRSGKPRLIVDLAVPRDIEPEVGELEGVRLYTIDDLEEVVEE 302 (311)
T ss_pred EEECCCCCch-----HHHHHHHHhhCCCCCeEEEEeCCCCCCchhhccCCCcEEEEHHHhHHHHHH
Confidence 9986554432 2333333333333456666433322110 1111234445677778777664
No 348
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=78.87 E-value=11 Score=35.20 Aligned_cols=89 Identities=15% Similarity=0.095 Sum_probs=52.7
Q ss_pred CcEEEEeccc-c-HHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 159 LVALDCGSGI-G-RITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 159 ~~VLDvGcG~-G-~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
.+|.=||+|. | .++..+...+. ..|+++|.++..++.+++. +. ... ...+..+. -...|+|+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g~-------~~~-~~~~~~~~---~~~aDvVi 71 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----GL-------GDR-VTTSAAEA---VKGADLVI 71 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----CC-------Cce-ecCCHHHH---hcCCCEEE
Confidence 4799999986 3 34555554554 3699999999887776542 11 001 11122111 13578888
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii 267 (348)
.+-... ....+++.+...+++|+.++.
T Consensus 72 iavp~~-----~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 72 LCVPVG-----ASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred ECCCHH-----HHHHHHHHHHhhCCCCCEEEe
Confidence 765443 234566777777888876554
No 349
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=78.72 E-value=21 Score=33.33 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=59.4
Q ss_pred CCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc-CCCCC--CCCCC
Q 018970 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDF--TPETG 229 (348)
Q Consensus 155 ~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~-d~~~~--~~~~~ 229 (348)
..++.+||=.|+ |.|..+..+++.....|++++.+++..+.+++ +... .-++.... +..+. ....+
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~-lGa~--------~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK-LGFD--------VAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCC--------EEEeccccccHHHHHHHhCCC
Confidence 567789999984 46788888876654468999989888888865 3210 01111110 11110 01124
Q ss_pred ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
.+|+|+-.-. . ..+..+.++|++||.+++..
T Consensus 207 gvdvv~d~~G-------~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 207 GYDCYFDNVG-------G--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CeEEEEECCC-------H--HHHHHHHHHhCcCcEEEEec
Confidence 6899885321 1 23577888999999999753
No 350
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=78.68 E-value=17 Score=33.78 Aligned_cols=95 Identities=19% Similarity=0.100 Sum_probs=58.1
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCCc-EEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC----CCCC
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF----TPET 228 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~-v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~----~~~~ 228 (348)
..++.+||-+|+|. |..+..+++..... +.+++.+++..+.+++.-.. .+...+-.+. ....
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~------------~~~~~~~~~~~~~~~~~~ 224 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGAT------------ETVDPSREDPEAQKEDNP 224 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCe------------EEecCCCCCHHHHHHhcC
Confidence 56778999998763 66666666654434 88899999988887543110 1111110110 0122
Q ss_pred CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
..+|+|+.+.. ....+..+.+.|+++|.++...
T Consensus 225 ~~vd~v~~~~~--------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 225 YGFDVVIEATG--------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCCcEEEECCC--------ChHHHHHHHHHHhcCCEEEEEe
Confidence 46899985421 0246677788899999988753
No 351
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=78.28 E-value=6.9 Score=35.86 Aligned_cols=89 Identities=16% Similarity=0.083 Sum_probs=62.2
Q ss_pred cCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 154 RNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 154 ~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
.+.++...+|+|+-+|.++-.|.+++-- |++||.-+ |.. ... + ...++....|-..+.+.....|-
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~m~-V~aVDng~-ma~---sL~-d--------tg~v~h~r~DGfk~~P~r~~idW 273 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRNMR-VYAVDNGP-MAQ---SLM-D--------TGQVTHLREDGFKFRPTRSNIDW 273 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcceE-EEEeccch-hhh---hhh-c--------ccceeeeeccCcccccCCCCCce
Confidence 3678899999999999999999977764 99999643 322 221 1 24577788888887765567888
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCC
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPG 262 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~Lkpg 262 (348)
.+|-.+= .+..+-..+...|..|
T Consensus 274 mVCDmVE------kP~rv~~li~~Wl~nG 296 (358)
T COG2933 274 MVCDMVE------KPARVAALIAKWLVNG 296 (358)
T ss_pred EEeehhc------CcHHHHHHHHHHHHcc
Confidence 8876652 3445555666666543
No 352
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.08 E-value=11 Score=33.93 Aligned_cols=103 Identities=13% Similarity=0.046 Sum_probs=55.7
Q ss_pred CCcEEEEecccc-H----HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-------
Q 018970 158 HLVALDCGSGIG-R----ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (348)
Q Consensus 158 ~~~VLDvGcG~G-~----~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (348)
+.++|-.|+++| . ++..|++.+. .|..++.+....+.+++...+. ....++.+|+.+..
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~v~~~~~ 80 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEEL--------DAPIFLPLDVREPGQLEAVFA 80 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhh--------ccceEEecCcCCHHHHHHHHH
Confidence 467899997642 3 3444555555 4888887754433333222110 12345667776642
Q ss_pred ---CCCCceeEEeechhhhc----------CChhhHHHH-----------HHHHHHcCCCCcEEEEEe
Q 018970 226 ---PETGRYDVIWVQWCIGH----------LTDDDFVSF-----------FKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 226 ---~~~~~fD~Ii~~~~l~~----------~~~~d~~~~-----------l~~~~~~LkpgG~lii~~ 269 (348)
...+..|+++.+..+.. ++.+++... .+.+...|+.+|.+++..
T Consensus 81 ~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 81 RIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred HHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 01257899987654321 222333332 355666777778776643
No 353
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=78.04 E-value=24 Score=33.06 Aligned_cols=100 Identities=15% Similarity=0.104 Sum_probs=56.1
Q ss_pred CcEEEEeccc-cH-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970 159 LVALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (348)
Q Consensus 159 ~~VLDvGcG~-G~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~ 236 (348)
.+|+=+|||. |. ++..|.+.+. .|+.++-+++.++..++.- |+.-...+....+ ...... +.+.+.||+|+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~---Gl~i~~~g~~~~~-~~~~~~-~~~~~~~D~viv 76 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAG---GLTLVEQGQASLY-AIPAET-ADAAEPIHRLLL 76 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcC---CeEEeeCCcceee-ccCCCC-cccccccCEEEE
Confidence 4799999995 44 5555554455 5999998876666555421 1100000100111 111111 111257998886
Q ss_pred chhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
.-=-+ +...+++.+...+.++..++..-
T Consensus 77 ~vK~~-----~~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 77 ACKAY-----DAEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred ECCHH-----hHHHHHHHHHhhCCCCCEEEEEe
Confidence 43322 45678889999999998776643
No 354
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=77.86 E-value=50 Score=31.14 Aligned_cols=154 Identities=13% Similarity=0.110 Sum_probs=86.6
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhC-CC--cEEEEcCCHHHHHHHHHHhCCCCC-------CCcC-C--------Cccee
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRY-FN--EVDLLEPVSHFLDAARESLAPENH-------MAPD-M--------HKATN 215 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~-~~--~v~~vD~S~~~l~~a~~~~~~~~~-------~~~~-~--------~~~i~ 215 (348)
.+....|+.+|||.-.+...|...+ .. .++=||.++........+ ....+ ...+ . ..+-.
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik-~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~ 163 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIK-RKPELSSILLGLHDEDVVDLSGTDLHSGRYH 163 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhc-ccCchhhhhhccccccccccCcceeccCcee
Confidence 3556789999999998888888766 33 456666665555444111 11000 0000 0 12223
Q ss_pred EEEcCCCCCCC----------CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc-CCCce-------
Q 018970 216 FFCVPLQDFTP----------ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA-RSGFV------- 277 (348)
Q Consensus 216 ~~~~d~~~~~~----------~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~-~~~~~------- 277 (348)
..-+|+.++.. ..+-.-++++-.++.+++++.-...++-+.+... .+.+++.|.+. .+.|.
T Consensus 164 ~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~~D~Fg~vM~~nl 242 (335)
T KOG2918|consen 164 LIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINPNDRFGKVMLANL 242 (335)
T ss_pred eeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCCCChHHHHHHHHH
Confidence 33344443320 0122345566678889998777788888888654 45556655443 33330
Q ss_pred --ecCCCCce-e-cCHHHHHHHHHhcCCeEEEEeecC
Q 018970 278 --LDKEDRSI-T-RSDFYFKELFSRCGLHIYKSKDQK 310 (348)
Q Consensus 278 --~d~~~~~~-~-~s~~~l~~l~~~aGf~~v~~~~~~ 310 (348)
.+-.-+.+ . .|.+..++-|..+||+-+...+..
T Consensus 243 k~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm~ 279 (335)
T KOG2918|consen 243 KRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDMN 279 (335)
T ss_pred HhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhHH
Confidence 01111111 1 478888999999999988866543
No 355
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=77.82 E-value=9.1 Score=36.63 Aligned_cols=96 Identities=17% Similarity=0.115 Sum_probs=52.7
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEE-cCCCCCCCCCCcee
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQDFTPETGRYD 232 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~~~~fD 232 (348)
..++.+||-.|+|. |.++..+++.....|++++.++.....+.+.+... .+.. .+...+....+.+|
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~-----------~vi~~~~~~~~~~~~~~~D 249 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGAD-----------SFLVSTDPEKMKAAIGTMD 249 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCc-----------EEEcCCCHHHHHhhcCCCC
Confidence 34677888899874 66667676654446888887765443332222210 0110 00001110012478
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+|+-.-. . ...+..+.++|++||.++...
T Consensus 250 ~vid~~g-------~-~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 250 YIIDTVS-------A-VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred EEEECCC-------C-HHHHHHHHHHhcCCcEEEEeC
Confidence 8875322 1 135677888999999998754
No 356
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=77.77 E-value=8.6 Score=37.43 Aligned_cols=71 Identities=14% Similarity=0.083 Sum_probs=47.7
Q ss_pred CcEEEEeccc-cHHHHHH-HHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC---CCceeE
Q 018970 159 LVALDCGSGI-GRITKNL-LIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE---TGRYDV 233 (348)
Q Consensus 159 ~~VLDvGcG~-G~~~~~l-a~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~ 233 (348)
.+||-||||. |...... ++++-.+|++.|-|.+.++.+..... .+++....|+.+.+-- -..+|+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----------~~v~~~~vD~~d~~al~~li~~~d~ 71 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----------GKVEALQVDAADVDALVALIKDFDL 71 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----------ccceeEEecccChHHHHHHHhcCCE
Confidence 4799999974 5544443 43443479999999888888876642 3578888888776310 134699
Q ss_pred Eeechh
Q 018970 234 IWVQWC 239 (348)
Q Consensus 234 Ii~~~~ 239 (348)
|+....
T Consensus 72 VIn~~p 77 (389)
T COG1748 72 VINAAP 77 (389)
T ss_pred EEEeCC
Confidence 886543
No 357
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=77.65 E-value=13 Score=34.03 Aligned_cols=124 Identities=15% Similarity=0.099 Sum_probs=71.8
Q ss_pred HHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHH
Q 018970 171 ITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFV 249 (348)
Q Consensus 171 ~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~ 249 (348)
+++.|.+.++. +|++.|.++..++.|.+.-- +.-...+.+.+ ..+|+|+.+-.+. ...
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~------------~~~~~~~~~~~----~~~DlvvlavP~~-----~~~ 59 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGI------------IDEASTDIEAV----EDADLVVLAVPVS-----AIE 59 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTS------------SSEEESHHHHG----GCCSEEEE-S-HH-----HHH
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCC------------eeeccCCHhHh----cCCCEEEEcCCHH-----HHH
Confidence 35667666744 79999999999988865411 11111111111 3469999877666 466
Q ss_pred HHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeecCCC--------CccceEEEE
Q 018970 250 SFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQKGL--------PEELFAVKM 321 (348)
Q Consensus 250 ~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~~~~--------~~~l~~v~~ 321 (348)
.+++++...+++|+.+.=...... ...+.+.+.+. .+...+-.....+- ..++|.-+.
T Consensus 60 ~~l~~~~~~~~~~~iv~Dv~SvK~-------------~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~ 125 (258)
T PF02153_consen 60 DVLEEIAPYLKPGAIVTDVGSVKA-------------PIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRN 125 (258)
T ss_dssp HHHHHHHCGS-TTSEEEE--S-CH-------------HHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSE
T ss_pred HHHHHhhhhcCCCcEEEEeCCCCH-------------HHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCe
Confidence 899999999999877643322110 11122333333 46677777777665 456777777
Q ss_pred EEEeecCC
Q 018970 322 YALTAEMP 329 (348)
Q Consensus 322 ~~l~~~~~ 329 (348)
|++.|...
T Consensus 126 ~il~p~~~ 133 (258)
T PF02153_consen 126 WILCPGED 133 (258)
T ss_dssp EEEEECTT
T ss_pred EEEeCCCC
Confidence 77776543
No 358
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=77.32 E-value=12 Score=35.50 Aligned_cols=44 Identities=11% Similarity=0.009 Sum_probs=34.2
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHH
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARE 198 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~ 198 (348)
+.++.+||-.|||. |..+..++......|+++|.++..++.+++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 56788999999975 666666665543369999999999988865
No 359
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=77.29 E-value=8.7 Score=37.66 Aligned_cols=88 Identities=10% Similarity=-0.056 Sum_probs=52.5
Q ss_pred CCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 156 ~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
-.+.+|+-+|+|. |......+.....+|+++|.++.....+... | . ...++++.. ...|+|
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~----G---------~--~v~~leeal---~~aDVV 254 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD----G---------F--RVMTMEEAA---KIGDIF 254 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc----C---------C--EeCCHHHHH---hcCCEE
Confidence 4577999999997 5555545544333699999888654444321 1 1 112222211 246998
Q ss_pred eechhhhcCChhhHHHHHH-HHHHcCCCCcEEEEEe
Q 018970 235 WVQWCIGHLTDDDFVSFFK-RAKVGLKPGGFFVLKE 269 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~-~~~~~LkpgG~lii~~ 269 (348)
+..-. . ..++. .....+|+|++++...
T Consensus 255 ItaTG-------~-~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 255 ITATG-------N-KDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred EECCC-------C-HHHHHHHHHhcCCCCcEEEEEC
Confidence 76322 1 23443 4778899999998764
No 360
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=76.06 E-value=7.4 Score=36.40 Aligned_cols=88 Identities=18% Similarity=0.134 Sum_probs=50.4
Q ss_pred CCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 157 ~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
.+.+|+=+|+|. |......+.....+|+++|.++...+.++.. . ..+ .++.++...-..+|+|+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~-G------------~~~--~~~~~l~~~l~~aDiVI 215 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEM-G------------LSP--FHLSELAEEVGKIDIIF 215 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc-C------------Cee--ecHHHHHHHhCCCCEEE
Confidence 467999999986 4433344433333799999998766655432 1 111 11112111114689999
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii 267 (348)
..-... -+-+.+.+.++||+.++-
T Consensus 216 ~t~p~~--------~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 216 NTIPAL--------VLTKEVLSKMPPEALIID 239 (296)
T ss_pred ECCChh--------hhhHHHHHcCCCCcEEEE
Confidence 753211 123556677899887663
No 361
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=75.72 E-value=9.3 Score=37.70 Aligned_cols=87 Identities=13% Similarity=0.017 Sum_probs=51.9
Q ss_pred CCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 157 ~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
.+.+|+-+|+|. |......+.....+|+++|.++.....+... | .. ..++.+.. ..+|+|+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~----G---------~~--v~~l~eal---~~aDVVI 272 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD----G---------FR--VMTMEEAA---ELGDIFV 272 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc----C---------CE--ecCHHHHH---hCCCEEE
Confidence 567999999996 4444434433333799999988665444321 1 11 11222221 3579998
Q ss_pred echhhhcCChhhHHHHHH-HHHHcCCCCcEEEEEe
Q 018970 236 VQWCIGHLTDDDFVSFFK-RAKVGLKPGGFFVLKE 269 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~-~~~~~LkpgG~lii~~ 269 (348)
..-. . ..++. .....+|+|++++...
T Consensus 273 ~aTG-------~-~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 273 TATG-------N-KDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred ECCC-------C-HHHHHHHHHhcCCCCCEEEEcC
Confidence 6431 1 23444 6788899999988754
No 362
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=75.63 E-value=12 Score=31.23 Aligned_cols=100 Identities=14% Similarity=0.061 Sum_probs=56.6
Q ss_pred cEEEEeccccHHHHH-HHHhCCCcEEEEcCCHHHHHHHHHHhCCCCC-CCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970 160 VALDCGSGIGRITKN-LLIRYFNEVDLLEPVSHFLDAARESLAPENH-MAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (348)
Q Consensus 160 ~VLDvGcG~G~~~~~-la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~-~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~ 237 (348)
+|.-||+|.+..+.. ++.....+|+....+++.++..++.-....+ .......++.+ ..|+.+.- ...|+|+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~---~~ad~Iiia 76 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL---EDADIIIIA 76 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH---TT-SEEEE-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh---CcccEEEec
Confidence 367789997654332 2333334699999999988888775442211 11122233433 33443221 346888764
Q ss_pred hhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
-.-. ....+++++...|+++-.+++.
T Consensus 77 vPs~-----~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 77 VPSQ-----AHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp S-GG-----GHHHHHHHHTTTSHTT-EEEET
T ss_pred ccHH-----HHHHHHHHHhhccCCCCEEEEe
Confidence 3322 3468999999999777666654
No 363
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=74.88 E-value=6.3 Score=33.95 Aligned_cols=79 Identities=20% Similarity=0.410 Sum_probs=49.5
Q ss_pred CCceeEEeechhhhcCCh----------hhHHHHHHHHHHcCCCCcEEEEEecccC-----CCceecC---CCCceec--
Q 018970 228 TGRYDVIWVQWCIGHLTD----------DDFVSFFKRAKVGLKPGGFFVLKENIAR-----SGFVLDK---EDRSITR-- 287 (348)
Q Consensus 228 ~~~fD~Ii~~~~l~~~~~----------~d~~~~l~~~~~~LkpgG~lii~~~~~~-----~~~~~d~---~~~~~~~-- 287 (348)
.+..|+|+++++|+.+.. +++.+++.++..+|+|+..+|.....+- .++.... ...+...
T Consensus 48 gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~Pv~~~~~ggfl~~~~~~~~~~lr~dv 127 (183)
T cd01842 48 GGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMPVAEEIKGGFLLPELHDLSKSLRYDV 127 (183)
T ss_pred CCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCCCCcCCcCceeccccccccccchhHH
Confidence 478899999999997753 3477888888899999988887543221 1232111 1111111
Q ss_pred --CHHHHHHHHHhcCCeEEEE
Q 018970 288 --SDFYFKELFSRCGLHIYKS 306 (348)
Q Consensus 288 --s~~~l~~l~~~aGf~~v~~ 306 (348)
-...-...+++.||.+.+.
T Consensus 128 ~eaN~~A~~va~~~~~dVlDL 148 (183)
T cd01842 128 LEGNFYSATLAKCYGFDVLDL 148 (183)
T ss_pred HHHHHHHHHHHHHcCceeeeh
Confidence 1122356788889998874
No 364
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=74.71 E-value=10 Score=32.66 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=53.0
Q ss_pred cEEEEeccccHHHHHHHHhCCCcEEEEcCC-HHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---------CCCC
Q 018970 160 VALDCGSGIGRITKNLLIRYFNEVDLLEPV-SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---------PETG 229 (348)
Q Consensus 160 ~VLDvGcG~G~~~~~la~~~~~~v~~vD~S-~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---------~~~~ 229 (348)
.|+.+|||-=.....+...... +..+|++ |.+++.-++.+...+. ....+.++..+|+.+.. +..+
T Consensus 81 qvV~LGaGlDTr~~Rl~~~~~~-~~~~evD~p~v~~~K~~~l~~~~~---~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 81 QVVNLGAGLDTRAYRLDNPAGG-VRWFEVDLPEVIALKRRLLPESGA---RPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp EEEEET-TT--HHHHHHHTTTT-EEEEEEE-HHHHHHHHHHHHHTHH---HHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred EEEEcCCCCCchHHHhhccccc-eEEEEeCCHHHHHHHHHHHHhCcc---cCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 8999999987777766654322 4444443 4455554444433100 00123567888988622 1234
Q ss_pred ceeEEeechhhhcCChhhHHHHHHHH
Q 018970 230 RYDVIWVQWCIGHLTDDDFVSFFKRA 255 (348)
Q Consensus 230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~ 255 (348)
.--++++-.++.+++.++...+++.+
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHh
Confidence 56688889999999988888888765
No 365
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=74.39 E-value=5.3 Score=36.65 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=28.5
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCC------CcEEEEcCCH
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYF------NEVDLLEPVS 190 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~------~~v~~vD~S~ 190 (348)
+.+...++|+|||.|.++.+++.... ..+..||-..
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 46677999999999999999987652 2689999543
No 366
>PLN02740 Alcohol dehydrogenase-like
Probab=74.34 E-value=27 Score=33.56 Aligned_cols=98 Identities=14% Similarity=0.040 Sum_probs=57.6
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc--CCCC-CC-CCC
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQD-FT-PET 228 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~--d~~~-~~-~~~ 228 (348)
+.++.+||-+|||. |..+..+++.... .|+++|.++..++.+++. .. ...++.... ++.+ +. ...
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~-Ga--------~~~i~~~~~~~~~~~~v~~~~~ 266 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM-GI--------TDFINPKDSDKPVHERIREMTG 266 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc-CC--------cEEEecccccchHHHHHHHHhC
Confidence 56788999999874 5566666655433 699999999999888653 21 001111110 0100 00 111
Q ss_pred CceeEEeechhhhcCChhhHHHHHHHHHHcCCCC-cEEEEEe
Q 018970 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (348)
Q Consensus 229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~Lkpg-G~lii~~ 269 (348)
+.+|+|+-.-.- ...+......+++| |.+++..
T Consensus 267 ~g~dvvid~~G~--------~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 267 GGVDYSFECAGN--------VEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCCEEEECCCC--------hHHHHHHHHhhhcCCCEEEEEc
Confidence 258988753321 13566677788886 9887754
No 367
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=74.28 E-value=31 Score=32.31 Aligned_cols=144 Identities=11% Similarity=0.118 Sum_probs=89.6
Q ss_pred CCcEEEEeccccHHHHHHHHhCCC--cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC--CC--CC----
Q 018970 158 HLVALDCGSGIGRITKNLLIRYFN--EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD--FT--PE---- 227 (348)
Q Consensus 158 ~~~VLDvGcG~G~~~~~la~~~~~--~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~--~~---- 227 (348)
-..|+-+|||- .++...-..+. .|.=+|. |+.++.=++.+.+.+... .....++..|+.+ |+ ..
T Consensus 93 ~~qvViLgaGL--DTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~---~~~~~~Va~Dl~~~dw~~~L~~~G~ 166 (297)
T COG3315 93 IRQVVILGAGL--DTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATP---PAHRRLVAVDLREDDWPQALAAAGF 166 (297)
T ss_pred ccEEEEecccc--ccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCC---CceEEEEeccccccchHHHHHhcCC
Confidence 35799999985 33333223333 3444553 555555556666543211 1257788888874 22 11
Q ss_pred -CCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccC-----C-----Cce-----ecCCCCcee-cCHH
Q 018970 228 -TGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIAR-----S-----GFV-----LDKEDRSIT-RSDF 290 (348)
Q Consensus 228 -~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~-----~-----~~~-----~d~~~~~~~-~s~~ 290 (348)
...--++++-+++.+++.+....+|..+...+.||-.+++...... . ... .+....... ....
T Consensus 167 d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 246 (297)
T COG3315 167 DRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPA 246 (297)
T ss_pred CcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHH
Confidence 2334588889999999998899999999999999988887642110 0 000 011111111 3578
Q ss_pred HHHHHHHhcCCeEEEEe
Q 018970 291 YFKELFSRCGLHIYKSK 307 (348)
Q Consensus 291 ~l~~l~~~aGf~~v~~~ 307 (348)
++...+.+.||......
T Consensus 247 e~~~~l~~~g~~~~~~~ 263 (297)
T COG3315 247 EIETWLAERGWRSTLNR 263 (297)
T ss_pred HHHHHHHhcCEEEEecC
Confidence 89999999999988763
No 368
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=74.22 E-value=11 Score=35.70 Aligned_cols=97 Identities=15% Similarity=0.056 Sum_probs=55.9
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcC---CCCCCCCCC
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP---LQDFTPETG 229 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d---~~~~~~~~~ 229 (348)
..++.+||=.|||. |..+..+++.... .|.+++.++.-++.+++. ... .-++....+ +..+. ...
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-Ga~--------~~i~~~~~~~~~~~~~~-~~~ 227 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL-GAM--------QTFNSREMSAPQIQSVL-REL 227 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc-CCc--------eEecCcccCHHHHHHHh-cCC
Confidence 46678999999865 5566666655433 478999999888877543 210 001111001 00111 123
Q ss_pred cee-EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 230 RYD-VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 230 ~fD-~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
.+| +|+-+-. . ...+....++|++||.+++..
T Consensus 228 ~~d~~v~d~~G-------~-~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 228 RFDQLILETAG-------V-PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CCCeEEEECCC-------C-HHHHHHHHHHhhcCCEEEEEc
Confidence 567 5543211 1 246777889999999998864
No 369
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=74.01 E-value=6.8 Score=38.06 Aligned_cols=45 Identities=9% Similarity=-0.130 Sum_probs=36.6
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHh
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~ 200 (348)
+.++.+||-|.+|-.....+ +...+.+|++||+||.++...+-+.
T Consensus 33 i~~~d~vl~ItSaG~N~L~y-L~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNALDY-LLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCCCeEEEEccCCchHHHH-HhcCCceEEEEeCCHHHHHHHHHHH
Confidence 67889999998877666665 4578889999999999988776544
No 370
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=73.91 E-value=17 Score=35.32 Aligned_cols=109 Identities=19% Similarity=0.267 Sum_probs=61.6
Q ss_pred CCCCcEEEEeccccH----HHHHHHHh--CCC--cEEEEcC----CHHHHHHHHHHhCCCCCCCcCCCcceeEEEc---C
Q 018970 156 NQHLVALDCGSGIGR----ITKNLLIR--YFN--EVDLLEP----VSHFLDAARESLAPENHMAPDMHKATNFFCV---P 220 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~----~~~~la~~--~~~--~v~~vD~----S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~---d 220 (348)
.+..+|+|+|.|.|. +...|+.+ ++. .+|+++. +..-++.+.+++.+.. ...+...+|... +
T Consensus 109 ~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA---~~lgv~fef~~v~~~~ 185 (374)
T PF03514_consen 109 ERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFA---RSLGVPFEFHPVVVES 185 (374)
T ss_pred CcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHH---HHcCccEEEEecccCc
Confidence 456799999999995 44444443 222 8999998 7777777766543210 001223445543 3
Q ss_pred CCCCC-----CCCCceeEEeechhhhcCChhh------HHHHHHHHHHcCCCCcEEEEE
Q 018970 221 LQDFT-----PETGRYDVIWVQWCIGHLTDDD------FVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 221 ~~~~~-----~~~~~fD~Ii~~~~l~~~~~~d------~~~~l~~~~~~LkpgG~lii~ 268 (348)
++++. ..++..=+|-+...+||+.++. ...+|+. .+.|+|.-.+++-
T Consensus 186 ~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~-ir~L~P~vvv~~E 243 (374)
T PF03514_consen 186 LEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRV-IRSLNPKVVVLVE 243 (374)
T ss_pred hhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHH-HHhcCCCEEEEEe
Confidence 33332 2223333444667778886321 2345554 4568998555553
No 371
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=73.85 E-value=15 Score=34.58 Aligned_cols=98 Identities=10% Similarity=0.021 Sum_probs=60.5
Q ss_pred CCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc-CCCC-C-CCCCC
Q 018970 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQD-F-TPETG 229 (348)
Q Consensus 155 ~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~-d~~~-~-~~~~~ 229 (348)
+.++.+||=.|+ |.|..+..+++....+|++++.++...+.+++.+... ..+++... ++.+ + ....+
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~--------~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFD--------DAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCc--------eeEEcCCcccHHHHHHHhCCC
Confidence 567889999986 4677888787664446888888888888887644321 01111110 1110 0 01114
Q ss_pred ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
.+|+|+-.-. . ..+..+.++|+++|.++...
T Consensus 221 gvd~v~d~~g-------~--~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 221 GIDIYFDNVG-------G--KMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CcEEEEECCC-------H--HHHHHHHHHhccCcEEEEec
Confidence 6898875321 1 35677889999999998753
No 372
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=72.97 E-value=4.6 Score=32.68 Aligned_cols=77 Identities=13% Similarity=0.171 Sum_probs=44.7
Q ss_pred ceeEEEcCCCCC-CCCCCceeEEeech-hhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHH
Q 018970 213 ATNFFCVPLQDF-TPETGRYDVIWVQW-CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDF 290 (348)
Q Consensus 213 ~i~~~~~d~~~~-~~~~~~fD~Ii~~~-~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~ 290 (348)
..++..+|+.+. +.-...||+|+.-. +-..-++---..++++++++++|||.+.-... ..
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~------------------a~ 93 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSS------------------AG 93 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--------------------BH
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeec------------------hH
Confidence 345555555431 11126789888642 21111111125799999999999998754321 23
Q ss_pred HHHHHHHhcCCeEEEEe
Q 018970 291 YFKELFSRCGLHIYKSK 307 (348)
Q Consensus 291 ~l~~l~~~aGf~~v~~~ 307 (348)
.+++.|.++||.+....
T Consensus 94 ~Vr~~L~~aGF~v~~~~ 110 (124)
T PF05430_consen 94 AVRRALQQAGFEVEKVP 110 (124)
T ss_dssp HHHHHHHHCTEEEEEEE
T ss_pred HHHHHHHHcCCEEEEcC
Confidence 48899999999976544
No 373
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=72.89 E-value=35 Score=32.00 Aligned_cols=97 Identities=20% Similarity=0.139 Sum_probs=58.6
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCCc-EEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcC-------CCCCC
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-------LQDFT 225 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~-v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d-------~~~~~ 225 (348)
..++.+||-.|+|. |..+..+++..... |.+++.++...+.+++. ... .-+.....+ +.+.
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~~--------~vi~~~~~~~~~~~~~~~~~- 229 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GAT--------HTVNVRTEDTPESAEKIAEL- 229 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CCc--------EEeccccccchhHHHHHHHH-
Confidence 56778888888765 66777777664444 88898888888777553 210 001111111 1111
Q ss_pred CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
.....+|+|+-+..- ...+..+.+.|+++|.++...
T Consensus 230 ~~~~~~d~vld~~g~--------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 230 LGGKGPDVVIECTGA--------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred hCCCCCCEEEECCCC--------HHHHHHHHHHhhcCCEEEEEc
Confidence 122458999864321 136677889999999988653
No 374
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=72.82 E-value=33 Score=31.75 Aligned_cols=97 Identities=11% Similarity=0.047 Sum_probs=59.3
Q ss_pred CCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-C-CCCCCc
Q 018970 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGR 230 (348)
Q Consensus 155 ~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~ 230 (348)
..++.+||=.|+ |.|..+..+++.....|++++.+++-.+.+++ +... .-++....++.+ + ....+.
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~-~Ga~--------~vi~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE-LGFD--------AVFNYKTVSLEEALKEAAPDG 211 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCC--------EEEeCCCccHHHHHHHHCCCC
Confidence 567788998884 56778887876654469999988888888866 3210 001111111100 0 011245
Q ss_pred eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+|+|+-.-. . ..+..+.+.|+++|.++...
T Consensus 212 vd~vld~~g-------~--~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 212 IDCYFDNVG-------G--EFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred cEEEEECCC-------H--HHHHHHHHhhccCCEEEEEc
Confidence 898885322 1 35678889999999998653
No 375
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=72.65 E-value=30 Score=31.98 Aligned_cols=92 Identities=25% Similarity=0.185 Sum_probs=56.6
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
..++.+||=.|+|. |..+..+++.....+++++.+++..+.+++ +.. .. ..+..+. .....+|+
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~-~g~--------~~-----~~~~~~~-~~~~~~d~ 217 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR-LGV--------ET-----VLPDEAE-SEGGGFDV 217 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCC--------cE-----EeCcccc-ccCCCCCE
Confidence 56778899887653 444555554433359999999999988876 321 00 0111111 12246899
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
|+-... . ...+..+.+.|+++|.+++..
T Consensus 218 vid~~g-------~-~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 218 VVEATG-------S-PSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred EEECCC-------C-hHHHHHHHHHhhcCCEEEEEc
Confidence 986421 1 235667788899999998743
No 376
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=72.48 E-value=56 Score=31.79 Aligned_cols=116 Identities=12% Similarity=0.077 Sum_probs=68.3
Q ss_pred hhhhHHHHHHHHhhhcCCccCCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHH-HHHhCCCCCCCcCCCcc
Q 018970 135 IKGSEAFLQMLLSDRFPNARNNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAA-RESLAPENHMAPDMHKA 213 (348)
Q Consensus 135 ~~~~~~~l~~~l~~~l~~~~~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a-~~~~~~~~~~~~~~~~~ 213 (348)
++...++|.+.+..... ..+||-++=..|.++..++...+. ...| ..+.+.| +.++...++. ...
T Consensus 28 wdaade~ll~~~~~~~~------~~~~~i~nd~fGal~~~l~~~~~~--~~~d--s~~~~~~~~~n~~~n~~~----~~~ 93 (378)
T PRK15001 28 WEAADEYLLQQLDDTEI------RGPVLILNDAFGALSCALAEHKPY--SIGD--SYISELATRENLRLNGID----ESS 93 (378)
T ss_pred cccHHHHHHHHHhhccc------CCCEEEEcCchhHHHHHHHhCCCC--eeeh--HHHHHHHHHHHHHHcCCC----ccc
Confidence 44556677776655321 138999999999999999854442 2234 2222333 3444443321 112
Q ss_pred eeEEEcCCCCCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970 214 TNFFCVPLQDFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (348)
Q Consensus 214 i~~~~~d~~~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 271 (348)
+++.... .++ ++.+|+|++...=.- ..+...+..+..+|.||+.+++.+..
T Consensus 94 ~~~~~~~-~~~---~~~~d~vl~~~PK~~---~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 94 VKFLDST-ADY---PQQPGVVLIKVPKTL---ALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred ceeeccc-ccc---cCCCCEEEEEeCCCH---HHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 3333221 122 256899887544221 35667899999999999998876643
No 377
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=72.47 E-value=4.2 Score=35.44 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=51.7
Q ss_pred CCCCCcEEEEecc-ccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 155 NNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 155 ~~~~~~VLDvGcG-~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
...+.+||-+|.= ||.+...++.+ .++|+.+|+.|.|-... ..++.|... +.+..+.+|+
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~l--------------p~~v~Fr~~----~~~~~G~~Dl 102 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGFL--------------PNNVKFRNL----LKFIRGEVDL 102 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhcC--------------CCCccHhhh----cCCCCCceeE
Confidence 3456789999986 78888888766 44699999998876533 233445443 2344589999
Q ss_pred EeechhhhcCCh
Q 018970 234 IWVQWCIGHLTD 245 (348)
Q Consensus 234 Ii~~~~l~~~~~ 245 (348)
|+-.-.+..+.+
T Consensus 103 ivDlTGlGG~~P 114 (254)
T COG4017 103 IVDLTGLGGIEP 114 (254)
T ss_pred EEeccccCCCCH
Confidence 999888887774
No 378
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=72.30 E-value=33 Score=32.07 Aligned_cols=94 Identities=10% Similarity=0.013 Sum_probs=57.0
Q ss_pred CcEEEEec--cccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-C-CCCCCceeE
Q 018970 159 LVALDCGS--GIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-F-TPETGRYDV 233 (348)
Q Consensus 159 ~~VLDvGc--G~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~-~~~~~~fD~ 233 (348)
.+||=.|+ |.|..+..+++.... .|++++.+++..+.+++.+... ..+.....++.+ + ....+.+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~--------~vi~~~~~~~~~~i~~~~~~gvd~ 227 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFD--------AAINYKTDNVAERLRELCPEGVDV 227 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCc--------EEEECCCCCHHHHHHHHCCCCceE
Confidence 78999886 567788888766443 6999999988888777644321 001111111110 0 011246899
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
|+-.-. . ..+..+.++|+++|.++...
T Consensus 228 vid~~g-------~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 228 YFDNVG-------G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred EEECCC-------c--HHHHHHHHHhccCCEEEEEe
Confidence 885322 1 12467788999999998743
No 379
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=72.24 E-value=14 Score=34.98 Aligned_cols=100 Identities=19% Similarity=0.124 Sum_probs=63.6
Q ss_pred CCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--CCC-C
Q 018970 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--PET-G 229 (348)
Q Consensus 155 ~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~-~ 229 (348)
.+++.+||-.|+ |-|.++.+|++.....+.++--|++-.+.+++.-.+ ..+++...|+.+-. ... .
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd---------~vi~y~~~~~~~~v~~~t~g~ 210 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGAD---------HVINYREEDFVEQVRELTGGK 210 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCC---------EEEcCCcccHHHHHHHHcCCC
Confidence 566889999984 457888999877643577777777766666655432 22333333332211 112 3
Q ss_pred ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (348)
Q Consensus 230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~ 272 (348)
.+|+|+..-. ...+.+..+.|+++|.++......
T Consensus 211 gvDvv~D~vG---------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 211 GVDVVLDTVG---------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CceEEEECCC---------HHHHHHHHHHhccCCEEEEEecCC
Confidence 6999986433 245666888899999998865443
No 380
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=72.22 E-value=8.7 Score=36.00 Aligned_cols=97 Identities=20% Similarity=0.044 Sum_probs=59.5
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcC----CCCCCCCCC
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP----LQDFTPETG 229 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d----~~~~~~~~~ 229 (348)
+.++.+||..|+|. |..+..+++.....|+++..+++..+.+++.-.. .-+.....+ +... ....
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~---------~v~~~~~~~~~~~l~~~-~~~~ 226 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGAD---------DTINVGDEDVAARLREL-TDGE 226 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCC---------EEecCcccCHHHHHHHH-hCCC
Confidence 56778999998874 7777777766444688998888888877543211 001111111 1111 1224
Q ss_pred ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
.+|+|+.+..- ...+..+.+.|+++|.++...
T Consensus 227 ~vd~vld~~g~--------~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 227 GADVVIDATGN--------PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CCCEEEECCCC--------HHHHHHHHHHHhcCCEEEEEc
Confidence 58999864210 235677888999999988653
No 381
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.01 E-value=31 Score=30.27 Aligned_cols=104 Identities=13% Similarity=-0.032 Sum_probs=57.9
Q ss_pred CCcEEEEecccc--H-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--------
Q 018970 158 HLVALDCGSGIG--R-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------- 226 (348)
Q Consensus 158 ~~~VLDvGcG~G--~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-------- 226 (348)
+.+||-.|++.| . ++..+++.+. .|.+++-++.-++.+.+.... ..++.+..+|+.+...
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSK--------YGNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHh--------cCCeEEEECCCCCHHHHHHHHHHH
Confidence 357898988543 2 2333344455 599999888766655444332 1246777888775320
Q ss_pred --CCCceeEEeechhhhcCC-hhh--------------HHHHHHHHHHcCCCCcEEEEEec
Q 018970 227 --ETGRYDVIWVQWCIGHLT-DDD--------------FVSFFKRAKVGLKPGGFFVLKEN 270 (348)
Q Consensus 227 --~~~~fD~Ii~~~~l~~~~-~~d--------------~~~~l~~~~~~LkpgG~lii~~~ 270 (348)
..+.+|.|+.+....... ..+ ...+++.+...++++|.+++...
T Consensus 76 ~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 76 AKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred HHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 013468777654321100 011 12345666667778887777543
No 382
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=71.37 E-value=14 Score=34.71 Aligned_cols=96 Identities=17% Similarity=0.078 Sum_probs=57.0
Q ss_pred CCCCCcEEEEecc-ccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCC----CCCCCCC
Q 018970 155 NNQHLVALDCGSG-IGRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (348)
Q Consensus 155 ~~~~~~VLDvGcG-~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~----~~~~~~~ 228 (348)
..++.+||..|+| .|..+..+++... ..+.+++.++...+.+++.-.. ..+.....++ .... ..
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~---------~vi~~~~~~~~~~i~~~~-~~ 234 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGAT---------DIINPKNGDIVEQILELT-GG 234 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCc---------EEEcCCcchHHHHHHHHc-CC
Confidence 4567789887775 3667777776654 3688888888777776643211 0011111111 1111 22
Q ss_pred CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
+.+|+|+....- ...+..+.+.|+++|.++..
T Consensus 235 ~~~d~vld~~g~--------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 235 RGVDCVIEAVGF--------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCCcEEEEccCC--------HHHHHHHHHHhhcCCEEEEE
Confidence 468988853211 14677788899999998865
No 383
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=71.17 E-value=8.2 Score=31.28 Aligned_cols=87 Identities=16% Similarity=0.142 Sum_probs=47.9
Q ss_pred CCcEEEEeccccH-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC-CCceeEEe
Q 018970 158 HLVALDCGSGIGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE-TGRYDVIW 235 (348)
Q Consensus 158 ~~~VLDvGcG~G~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~Ii 235 (348)
..+|+|||-|.=. .+..|.+.+++ |+++|+.+. .+ ...+.+...|+.+-... -...|+|+
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G~d-V~~tDi~~~---~a--------------~~g~~~v~DDif~P~l~iY~~a~lIY 75 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERGFD-VIATDINPR---KA--------------PEGVNFVVDDIFNPNLEIYEGADLIY 75 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS-E-EEEE-SS-S---------------------STTEE---SSS--HHHHTTEEEEE
T ss_pred CCcEEEECcCCCHHHHHHHHHcCCc-EEEEECccc---cc--------------ccCcceeeecccCCCHHHhcCCcEEE
Confidence 3599999999754 56777777775 999999876 11 12367888888763311 13689999
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+...-. +++..+-++++.+ |.-++|..
T Consensus 76 SiRPP~-----El~~~il~lA~~v--~adlii~p 102 (127)
T PF03686_consen 76 SIRPPP-----ELQPPILELAKKV--GADLIIRP 102 (127)
T ss_dssp EES--T-----TSHHHHHHHHHHH--T-EEEEE-
T ss_pred EeCCCh-----HHhHHHHHHHHHh--CCCEEEEC
Confidence 866533 5666666666643 55666654
No 384
>PLN02494 adenosylhomocysteinase
Probab=70.52 E-value=9.2 Score=38.16 Aligned_cols=89 Identities=15% Similarity=0.011 Sum_probs=52.2
Q ss_pred CCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 156 ~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
-.+.+|+-+|+|+ |......+......|+++|.++.....+... | ..+ .++++.- ...|+|
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~----G---------~~v--v~leEal---~~ADVV 313 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALME----G---------YQV--LTLEDVV---SEADIF 313 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhc----C---------Cee--ccHHHHH---hhCCEE
Confidence 3568999999996 5444444433333699999887654444221 0 111 1222211 357999
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+....-.+ -+.....+.||+||+|+...
T Consensus 314 I~tTGt~~-------vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 314 VTTTGNKD-------IIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred EECCCCcc-------chHHHHHhcCCCCCEEEEcC
Confidence 87322221 23367778899999998864
No 385
>PLN02827 Alcohol dehydrogenase-like
Probab=70.27 E-value=29 Score=33.44 Aligned_cols=98 Identities=13% Similarity=-0.019 Sum_probs=56.3
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEE--cCCCC-CC-CCC
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC--VPLQD-FT-PET 228 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~--~d~~~-~~-~~~ 228 (348)
..++.+||-+|+|. |.++..+++. +...|+++|.++...+.+++.-.. .-++... .++.. +. ...
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~---------~~i~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVT---------DFINPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc---------EEEcccccchHHHHHHHHHhC
Confidence 56788999998864 5555666654 433588999999888888553111 0011110 01100 00 011
Q ss_pred CceeEEeechhhhcCChhhHHHHHHHHHHcCCCC-cEEEEEe
Q 018970 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (348)
Q Consensus 229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~Lkpg-G~lii~~ 269 (348)
+.+|+|+-.-. + ...+....+.|++| |.+++..
T Consensus 262 ~g~d~vid~~G--~------~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 262 GGADYSFECVG--D------TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCCEEEECCC--C------hHHHHHHHHhhccCCCEEEEEC
Confidence 35888875322 1 13566778889998 9998753
No 386
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=70.26 E-value=8.4 Score=31.77 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=24.2
Q ss_pred EEecccc--HHHHHHHH--hCCC-cEEEEcCCHHHHHHHHHH
Q 018970 163 DCGSGIG--RITKNLLI--RYFN-EVDLLEPVSHFLDAARES 199 (348)
Q Consensus 163 DvGcG~G--~~~~~la~--~~~~-~v~~vD~S~~~l~~a~~~ 199 (348)
|||++.| .....++. .+.. .|+++|++|...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 66555542 2333 699999999999998888
No 387
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=70.07 E-value=23 Score=33.73 Aligned_cols=96 Identities=15% Similarity=0.066 Sum_probs=53.6
Q ss_pred CCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 156 ~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
.++.+||-.|+|. |..+..+++.....+++++.+++....+.+.+... ..+ ...+...+......+|+|
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~--------~~i--~~~~~~~~~~~~~~~D~v 248 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGAD--------DYL--VSSDAAEMQEAADSLDYI 248 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCc--------EEe--cCCChHHHHHhcCCCcEE
Confidence 4667888887764 66666666554335888887776665554443210 000 000100111011247888
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+-.-. ....+..+.+.|++||.++...
T Consensus 249 id~~g--------~~~~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 249 IDTVP--------VFHPLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred EECCC--------chHHHHHHHHHhccCCEEEEEC
Confidence 74321 0135667788999999988754
No 388
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=70.04 E-value=13 Score=34.35 Aligned_cols=103 Identities=14% Similarity=0.172 Sum_probs=69.6
Q ss_pred CCCcEEEEeccccHHHHHHH-HhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCC--CCceeE
Q 018970 157 QHLVALDCGSGIGRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPE--TGRYDV 233 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la-~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~~fD~ 233 (348)
.+..|+-+|- .-..+.+++ ...+..|..+|++...++..++.+.+.|+ .+++.+..|+.+--++ .+.||+
T Consensus 152 ~gK~I~vvGD-DDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~------~~ie~~~~Dlr~plpe~~~~kFDv 224 (354)
T COG1568 152 EGKEIFVVGD-DDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY------NNIEAFVFDLRNPLPEDLKRKFDV 224 (354)
T ss_pred CCCeEEEEcC-chhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc------cchhheeehhcccChHHHHhhCCe
Confidence 3457999993 333344443 34566899999999999999888777654 4577788888763222 268999
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCC---cEEEEEe
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPG---GFFVLKE 269 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~Lkpg---G~lii~~ 269 (348)
++.-.+ +.+. -+..|+.+=...||.- |++.++-
T Consensus 225 fiTDPp-eTi~--alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 225 FITDPP-ETIK--ALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred eecCch-hhHH--HHHHHHhccHHHhcCCCccceEeeee
Confidence 886433 2222 4667787777888775 7777754
No 389
>PRK08265 short chain dehydrogenase; Provisional
Probab=69.88 E-value=31 Score=31.01 Aligned_cols=71 Identities=20% Similarity=0.232 Sum_probs=42.8
Q ss_pred CCcEEEEecccc--H-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--------
Q 018970 158 HLVALDCGSGIG--R-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------- 226 (348)
Q Consensus 158 ~~~VLDvGcG~G--~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-------- 226 (348)
+.++|-.|++.| . ++..|++++. .|.+++-++.-++...+... .++.+..+|+.+...
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~Dl~~~~~~~~~~~~~ 74 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLG----------ERARFIATDITDDAAIERAVATV 74 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC----------CeeEEEEecCCCHHHHHHHHHHH
Confidence 357888886443 2 3444555566 59999988765555444332 246777888876430
Q ss_pred --CCCceeEEeechh
Q 018970 227 --ETGRYDVIWVQWC 239 (348)
Q Consensus 227 --~~~~fD~Ii~~~~ 239 (348)
..+..|+++.+..
T Consensus 75 ~~~~g~id~lv~~ag 89 (261)
T PRK08265 75 VARFGRVDILVNLAC 89 (261)
T ss_pred HHHhCCCCEEEECCC
Confidence 1146798886543
No 390
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=69.77 E-value=50 Score=32.17 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=58.6
Q ss_pred CCCCCcEEEEe-cc-ccHHHHHHHHhC---CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCC---CCC-
Q 018970 155 NNQHLVALDCG-SG-IGRITKNLLIRY---FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQ---DFT- 225 (348)
Q Consensus 155 ~~~~~~VLDvG-cG-~G~~~~~la~~~---~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~---~~~- 225 (348)
+.++.+||=+| +| .|..+..++... ...|+++|.++..++.+++....... ....+....+.. ++.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~-----~~Ga~~~~i~~~~~~~~~~ 247 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA-----SRGIELLYVNPATIDDLHA 247 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc-----ccCceEEEECCCccccHHH
Confidence 56778999997 34 577777777653 23699999999999999875321100 000111111111 110
Q ss_pred -----CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970 226 -----PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 226 -----~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
.....+|+|+..-. . ...+....+.|+++|.+++.
T Consensus 248 ~v~~~t~g~g~D~vid~~g-------~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 248 TLMELTGGQGFDDVFVFVP-------V-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred HHHHHhCCCCCCEEEEcCC-------C-HHHHHHHHHHhccCCeEEEE
Confidence 11235888875321 0 24567788889988866543
No 391
>PRK05872 short chain dehydrogenase; Provisional
Probab=69.60 E-value=41 Score=31.01 Aligned_cols=74 Identities=19% Similarity=0.175 Sum_probs=44.7
Q ss_pred CCcEEEEeccccH---HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---------
Q 018970 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--------- 225 (348)
Q Consensus 158 ~~~VLDvGcG~G~---~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------- 225 (348)
+.+||-.|++.|. ++..+++++. +|.+++.++..++...+.+.. ...+....+|+.+..
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~--------~~~~~~~~~Dv~d~~~v~~~~~~~ 79 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG--------DDRVLTVVADVTDLAAMQAAAEEA 79 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC--------CCcEEEEEecCCCHHHHHHHHHHH
Confidence 4578888865542 3444454555 599999888877766555432 123444557776632
Q ss_pred -CCCCceeEEeechhh
Q 018970 226 -PETGRYDVIWVQWCI 240 (348)
Q Consensus 226 -~~~~~fD~Ii~~~~l 240 (348)
...+..|+|+.+-.+
T Consensus 80 ~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 80 VERFGGIDVVVANAGI 95 (296)
T ss_pred HHHcCCCCEEEECCCc
Confidence 012568999976554
No 392
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.51 E-value=45 Score=30.21 Aligned_cols=74 Identities=8% Similarity=-0.061 Sum_probs=41.5
Q ss_pred CCcEEEEeccc----cH-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-------
Q 018970 158 HLVALDCGSGI----GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (348)
Q Consensus 158 ~~~VLDvGcG~----G~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (348)
+.++|-.|++. |. ++..|++.+.. |..++.+....+.+++.... .....++.+|+.+..
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~~-vil~~r~~~~~~~~~~~~~~--------~~~~~~~~~Dl~~~~~v~~~~~ 76 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQNDKLKGRVEEFAAQ--------LGSDIVLPCDVAEDASIDAMFA 76 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCCE-EEEEecchhHHHHHHHHHhc--------cCCceEeecCCCCHHHHHHHHH
Confidence 35788899864 32 45666666664 88877664322333332221 112446667876632
Q ss_pred ---CCCCceeEEeechhh
Q 018970 226 ---PETGRYDVIWVQWCI 240 (348)
Q Consensus 226 ---~~~~~fD~Ii~~~~l 240 (348)
...+.+|+++.+-.+
T Consensus 77 ~~~~~~g~iD~linnAg~ 94 (262)
T PRK07984 77 ELGKVWPKFDGFVHSIGF 94 (262)
T ss_pred HHHhhcCCCCEEEECCcc
Confidence 112568999876543
No 393
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=68.78 E-value=41 Score=31.33 Aligned_cols=115 Identities=15% Similarity=0.159 Sum_probs=62.5
Q ss_pred cEEEEeccc--cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (348)
Q Consensus 160 ~VLDvGcG~--G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~ 237 (348)
+|-=||+|. +.++..|++.+. +|.+.|.+++.++.+.+.-.. . ..+..++.......|+|++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~g~~------------~--~~s~~~~~~~~~~~dvIi~~ 66 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKEDRTT------------G--VANLRELSQRLSAPRVVWVM 66 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCc------------c--cCCHHHHHhhcCCCCEEEEE
Confidence 466788886 235566665565 499999999887766542100 0 01211211111235888875
Q ss_pred hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEe
Q 018970 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSK 307 (348)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~ 307 (348)
-. +.....+++.+...|++|-.++-..+.. ..+.....+.+++.|...++..
T Consensus 67 vp-----~~~~~~v~~~l~~~l~~g~ivid~st~~-------------~~~t~~~~~~~~~~g~~~vda~ 118 (298)
T TIGR00872 67 VP-----HGIVDAVLEELAPTLEKGDIVIDGGNSY-------------YKDSLRRYKLLKEKGIHLLDCG 118 (298)
T ss_pred cC-----chHHHHHHHHHHhhCCCCCEEEECCCCC-------------cccHHHHHHHHHhcCCeEEecC
Confidence 32 2245677888888888875433211110 0122334556667777666543
No 394
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=68.66 E-value=42 Score=30.88 Aligned_cols=96 Identities=16% Similarity=0.099 Sum_probs=52.6
Q ss_pred cEEEEeccc-cH-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970 160 VALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (348)
Q Consensus 160 ~VLDvGcG~-G~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~ 237 (348)
+|+=||+|. |. ++..|+..+. +|+.++.++..++..++. ++.- . .........-..+... ...+|+|+..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~----g~~~-~-~~~~~~~~~~~~~~~~-~~~~d~vila 73 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNEN----GLRL-E-DGEITVPVLAADDPAE-LGPQDLVILA 73 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHc----CCcc-c-CCceeecccCCCChhH-cCCCCEEEEe
Confidence 588899986 33 4444454454 599999877777665542 1100 0 0001100000111111 1568998875
Q ss_pred hhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
---. +...+++.+...+.++..++..
T Consensus 74 ~k~~-----~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 74 VKAY-----QLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred cccc-----cHHHHHHHHhhhcCCCCEEEEe
Confidence 4422 4567888888888877766654
No 395
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=68.57 E-value=6.8 Score=31.93 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=46.6
Q ss_pred CCCcEEEEeccc-cH-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 157 QHLVALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 157 ~~~~VLDvGcG~-G~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
.+.+||=+|+|. |+ ....|+..++.+++.+.-+.+-.+...+.+.. ..+.+ .+++++......+|+|
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~---------~~~~~--~~~~~~~~~~~~~Div 79 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG---------VNIEA--IPLEDLEEALQEADIV 79 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG---------CSEEE--EEGGGHCHHHHTESEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc---------cccce--eeHHHHHHHHhhCCeE
Confidence 467999999975 32 45556666777899999887766665555522 22333 3333433112479999
Q ss_pred eechhhhc
Q 018970 235 WVQWCIGH 242 (348)
Q Consensus 235 i~~~~l~~ 242 (348)
+..-...+
T Consensus 80 I~aT~~~~ 87 (135)
T PF01488_consen 80 INATPSGM 87 (135)
T ss_dssp EE-SSTTS
T ss_pred EEecCCCC
Confidence 98766554
No 396
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=68.52 E-value=32 Score=31.81 Aligned_cols=97 Identities=16% Similarity=0.075 Sum_probs=50.4
Q ss_pred cEEEEecccc-H-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcC-CCCCCCCCCceeEEee
Q 018970 160 VALDCGSGIG-R-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP-LQDFTPETGRYDVIWV 236 (348)
Q Consensus 160 ~VLDvGcG~G-~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~~~~~fD~Ii~ 236 (348)
+|+=+|+|.- . ++..|++.+. .|+.++. ++.++..++. ++..........+ ... ..+.......+|+|+.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~~~----g~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~vil 74 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALRER----GLVIRSDHGDAVV-PGPVITDPEELTGPFDLVIL 74 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHHhC----CeEEEeCCCeEEe-cceeecCHHHccCCCCEEEE
Confidence 5888999863 3 4444554454 5999987 6666655432 1100000000100 000 1111111156898876
Q ss_pred chhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
.---. +...+++.+...+.++..++..
T Consensus 75 avk~~-----~~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 75 AVKAY-----QLDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred Eeccc-----CHHHHHHHHHhhcCCCCEEEEe
Confidence 54322 4567888888888887766654
No 397
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=68.14 E-value=14 Score=31.04 Aligned_cols=115 Identities=16% Similarity=0.156 Sum_probs=65.3
Q ss_pred cEEEEeccc--cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (348)
Q Consensus 160 ~VLDvGcG~--G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~ 237 (348)
+|-=||+|. ..++..|++.++. |++.|.+++.++...+.- +. .+.+..++. ...|+|+++
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~~~~~~~~~~g-------------~~-~~~s~~e~~---~~~dvvi~~ 64 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSPEKAEALAEAG-------------AE-VADSPAEAA---EQADVVILC 64 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTE-EEEEESSHHHHHHHHHTT-------------EE-EESSHHHHH---HHBSEEEE-
T ss_pred EEEEEchHHHHHHHHHHHHhcCCe-EEeeccchhhhhhhHHhh-------------hh-hhhhhhhHh---hcccceEee
Confidence 566678875 2345666656665 999999988777665431 11 122222221 345888864
Q ss_pred hhhhcCChhhHHHHHHH--HHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEEeec
Q 018970 238 WCIGHLTDDDFVSFFKR--AKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKSKDQ 309 (348)
Q Consensus 238 ~~l~~~~~~d~~~~l~~--~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~~~~ 309 (348)
-. .++....++.. +...|++|..++-..... ..+..++.+.+++.|...++....
T Consensus 65 v~----~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~-------------p~~~~~~~~~~~~~g~~~vdapV~ 121 (163)
T PF03446_consen 65 VP----DDDAVEAVLFGENILAGLRPGKIIIDMSTIS-------------PETSRELAERLAAKGVRYVDAPVS 121 (163)
T ss_dssp SS----SHHHHHHHHHCTTHGGGS-TTEEEEE-SS---------------HHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cc----cchhhhhhhhhhHHhhccccceEEEecCCcc-------------hhhhhhhhhhhhhccceeeeeeee
Confidence 33 12356677777 888888877765433211 023445778888889888875543
No 398
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.96 E-value=39 Score=31.05 Aligned_cols=98 Identities=13% Similarity=0.105 Sum_probs=55.3
Q ss_pred cEEEEeccc--cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHh-------CCCCCCCcCC----CcceeEEEcCCCCCCC
Q 018970 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESL-------APENHMAPDM----HKATNFFCVPLQDFTP 226 (348)
Q Consensus 160 ~VLDvGcG~--G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~-------~~~~~~~~~~----~~~i~~~~~d~~~~~~ 226 (348)
+|.=||+|. +.++..++..+. .|+++|++++.++.+++.+ .+.+...... ..++.+ ..|...
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~--- 79 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD--- 79 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---
Confidence 578889985 455666666666 5999999999987655322 1111100000 001221 223222
Q ss_pred CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (348)
Q Consensus 227 ~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~li 266 (348)
-...|+|+.+-.-. + +-...+++++.+.++|+..+.
T Consensus 80 -~~~aDlVi~av~e~-~--~~k~~~~~~l~~~~~~~~il~ 115 (282)
T PRK05808 80 -LKDADLVIEAATEN-M--DLKKKIFAQLDEIAKPEAILA 115 (282)
T ss_pred -hccCCeeeeccccc-H--HHHHHHHHHHHhhCCCCcEEE
Confidence 14578888643211 0 122478999999999887763
No 399
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=67.66 E-value=19 Score=29.48 Aligned_cols=101 Identities=19% Similarity=0.147 Sum_probs=53.7
Q ss_pred EEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc-CCCCCCCCCCceeEEeech
Q 018970 161 ALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV-PLQDFTPETGRYDVIWVQW 238 (348)
Q Consensus 161 VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~fD~Ii~~~ 238 (348)
|+=+|+|. |.+..+.+.+....|+.+.-++ .++..++.--.. ........+... ...........||+|+.+-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v 75 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTI----TGPDGDETVQPPIVISAPSADAGPYDLVIVAV 75 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEE----EETTEEEEEEEEEEESSHGHHHSTESEEEE-S
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEE----EecccceecccccccCcchhccCCCcEEEEEe
Confidence 46678875 5544444434344699999877 555544321000 000000001000 1111111236799998753
Q ss_pred hhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970 239 CIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (348)
Q Consensus 239 ~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 271 (348)
=-. +...+++.+...+.|+..+++..|-
T Consensus 76 Ka~-----~~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 76 KAY-----QLEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp SGG-----GHHHHHHHHCTGEETTEEEEEESSS
T ss_pred ccc-----chHHHHHHHhhccCCCcEEEEEeCC
Confidence 222 5678999999999999888776543
No 400
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=67.14 E-value=56 Score=31.19 Aligned_cols=99 Identities=14% Similarity=0.020 Sum_probs=58.3
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEE--cCCCC-C-CCCC
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC--VPLQD-F-TPET 228 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~--~d~~~-~-~~~~ 228 (348)
+.++.+||-+|||. |..+..+++.... .|+++|.++..++.+++.-.. .-++... .++.+ + ....
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~---------~~i~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGAT---------DCVNPNDYDKPIQEVIVEITD 253 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC---------eEEcccccchhHHHHHHHHhC
Confidence 56778999999874 6666767665433 699999999999888653211 0011110 00000 0 0111
Q ss_pred CceeEEeechhhhcCChhhHHHHHHHHHHcCCCC-cEEEEEec
Q 018970 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKEN 270 (348)
Q Consensus 229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~Lkpg-G~lii~~~ 270 (348)
+.+|+|+-.-. . ...+..+.+.+++| |.+++...
T Consensus 254 ~g~d~vid~~G-------~-~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 254 GGVDYSFECIG-------N-VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCCCEEEECCC-------C-HHHHHHHHHHhhcCCCeEEEEec
Confidence 35888875322 1 23566777888886 98887543
No 401
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=67.02 E-value=15 Score=34.35 Aligned_cols=97 Identities=20% Similarity=0.118 Sum_probs=57.8
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCCc-EEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEE---cCCCCCCCCCC
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC---VPLQDFTPETG 229 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~-v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~---~d~~~~~~~~~ 229 (348)
..++.+||-.|+|. |..+..+++..... +++++.++...+.+++. ... .-+.... ..+.... ...
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~-g~~--------~~~~~~~~~~~~~~~~~-~~~ 226 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL-GAD--------DTINPKEEDVEKVRELT-EGR 226 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-CCC--------EEecCccccHHHHHHHh-CCC
Confidence 45677899998765 66777777654444 89999888887777432 110 0011110 0011111 123
Q ss_pred ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
.+|+|+.+. . ....+..+.++|+++|.++...
T Consensus 227 ~~d~vld~~-----g---~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 227 GADLVIEAA-----G---SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCCEEEECC-----C---CHHHHHHHHHHhhcCCEEEEEc
Confidence 489998541 1 1245677889999999988754
No 402
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=66.09 E-value=13 Score=36.00 Aligned_cols=109 Identities=14% Similarity=0.032 Sum_probs=65.2
Q ss_pred cCCCCCcEEEEeccccHHHHHHHHhCC-CcEEEEcCCHHHHHHHHH----------HhCCCCCCCcCCCcceeEEEcCCC
Q 018970 154 RNNQHLVALDCGSGIGRITKNLLIRYF-NEVDLLEPVSHFLDAARE----------SLAPENHMAPDMHKATNFFCVPLQ 222 (348)
Q Consensus 154 ~~~~~~~VLDvGcG~G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~----------~~~~~~~~~~~~~~~i~~~~~d~~ 222 (348)
.+++.....|+|+|.|.....++.... ..-.|+++...--+.+.. .++.. ...+....+++.
T Consensus 189 ~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~-------~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 189 KLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK-------PNKIETIHGSFL 261 (419)
T ss_pred ccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC-------cCceeecccccC
Confidence 478889999999999999887775432 244555544433333322 12221 223555555554
Q ss_pred CCCC---CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEeccc
Q 018970 223 DFTP---ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIA 272 (348)
Q Consensus 223 ~~~~---~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~ 272 (348)
+-.. -....++|+++++.- . +++..=++++..-+++|-.++=.+...
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~F--d-p~L~lr~~eil~~ck~gtrIiS~~~L~ 311 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVAF--D-PELKLRSKEILQKCKDGTRIISSKPLV 311 (419)
T ss_pred CHHHHHHHhhcceEEEEecccC--C-HHHHHhhHHHHhhCCCcceEecccccc
Confidence 3221 124578999887744 2 244555668888889988887665443
No 403
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=65.77 E-value=59 Score=30.97 Aligned_cols=98 Identities=14% Similarity=0.050 Sum_probs=57.3
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc--CCCC-C-CCCC
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV--PLQD-F-TPET 228 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~--d~~~-~-~~~~ 228 (348)
..++.+||-+|+|. |..+..+++.... .|+++|.++..++.+++. .. ..-++.... ++.+ + ....
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l-Ga--------~~~i~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF-GA--------TDCVNPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC--------CEEEcccccchHHHHHHHHHhC
Confidence 56778999998764 5566666655433 599999999988888642 21 001111110 0100 0 0112
Q ss_pred CceeEEeechhhhcCChhhHHHHHHHHHHcCCCC-cEEEEEe
Q 018970 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (348)
Q Consensus 229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~Lkpg-G~lii~~ 269 (348)
+.+|+|+-.-. . ...+..+.+.|+++ |.+++..
T Consensus 255 ~g~d~vid~~g--~------~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 255 GGVDYTFECIG--N------VKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CCCcEEEECCC--C------hHHHHHHHHhhccCCCeEEEEc
Confidence 36898875321 1 24667778889887 9888754
No 404
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=65.65 E-value=17 Score=34.46 Aligned_cols=100 Identities=15% Similarity=0.134 Sum_probs=55.2
Q ss_pred CcEEEEeccc--cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhC-------CCCCCCcCCCcceeEEEcCCCCCCCCCC
Q 018970 159 LVALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLA-------PENHMAPDMHKATNFFCVPLQDFTPETG 229 (348)
Q Consensus 159 ~~VLDvGcG~--G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~-------~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 229 (348)
.+|.-||+|+ ..++..++..+++ |++.|.+++.++.++..+. +.+........++.+.. ++.+. -.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~a---v~ 82 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEAC---VA 82 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHH---hc
Confidence 5789999995 3455556666765 9999999998877655332 11111000011222221 22111 13
Q ss_pred ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (348)
Q Consensus 230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~li 266 (348)
..|+|+-+ +.+.+. --..+++++.+.++|+-+|.
T Consensus 83 ~aDlViEa-vpE~l~--vK~~lf~~l~~~~~~~aIla 116 (321)
T PRK07066 83 DADFIQES-APEREA--LKLELHERISRAAKPDAIIA 116 (321)
T ss_pred CCCEEEEC-CcCCHH--HHHHHHHHHHHhCCCCeEEE
Confidence 45777653 222211 23467899999999987443
No 405
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=65.45 E-value=63 Score=28.67 Aligned_cols=74 Identities=16% Similarity=0.030 Sum_probs=44.3
Q ss_pred CCcEEEEeccccH---HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---------
Q 018970 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT--------- 225 (348)
Q Consensus 158 ~~~VLDvGcG~G~---~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--------- 225 (348)
+.++|=.|++.|. ++..|++++. +|.+++-++..++...+.+... ...+.+..+|+.+..
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQE-------GIKAHAAPFNVTHKQEVEAAIEHI 80 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhc-------CCeEEEEecCCCCHHHHHHHHHHH
Confidence 3568888865442 3444454555 5999998877766655544321 224566777876642
Q ss_pred -CCCCceeEEeechh
Q 018970 226 -PETGRYDVIWVQWC 239 (348)
Q Consensus 226 -~~~~~fD~Ii~~~~ 239 (348)
...+.+|+|+.+..
T Consensus 81 ~~~~~~id~vi~~ag 95 (254)
T PRK08085 81 EKDIGPIDVLINNAG 95 (254)
T ss_pred HHhcCCCCEEEECCC
Confidence 01246899987654
No 406
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=64.52 E-value=62 Score=31.43 Aligned_cols=106 Identities=10% Similarity=-0.064 Sum_probs=59.1
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEE-cCCCC-CC--CCC
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC-VPLQD-FT--PET 228 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~-~d~~~-~~--~~~ 228 (348)
..++.+||=.|+|. |..+..++.. +...+..+|.++.-++.+++. .. ..+.... .++.+ +. ...
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~-Ga---------~~v~~~~~~~~~~~v~~~~~~ 252 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF-GC---------ETVDLSKDATLPEQIEQILGE 252 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc-CC---------eEEecCCcccHHHHHHHHcCC
Confidence 56677888888864 5556666654 444466778888888888763 11 0010000 01100 00 112
Q ss_pred CceeEEeechhhhc------CChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970 229 GRYDVIWVQWCIGH------LTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (348)
Q Consensus 229 ~~fD~Ii~~~~l~~------~~~~d~~~~l~~~~~~LkpgG~lii~~~ 270 (348)
..+|+|+-.-.-.. ....+....++.+.+++++||.+++...
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 35898885332110 0001223578888999999999998654
No 407
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=64.41 E-value=17 Score=31.58 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcC-CeEEEE
Q 018970 248 FVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCG-LHIYKS 306 (348)
Q Consensus 248 ~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aG-f~~v~~ 306 (348)
+..+++++.++|||||.+++.-..... .. .....+++..| |.+...
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~~------------~~-~~~~~~~~~~g~~~~~~~ 81 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDREI------------AG-FLFELALEIFGGFFLRNE 81 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCEE------------CT-HHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchhh------------hH-HHHHHHHHHhhhhheecc
Confidence 577899999999999998886422110 00 23445566667 877663
No 408
>PLN00203 glutamyl-tRNA reductase
Probab=64.24 E-value=33 Score=34.85 Aligned_cols=43 Identities=21% Similarity=0.319 Sum_probs=29.3
Q ss_pred CCcEEEEeccc-cHH-HHHHHHhCCCcEEEEcCCHHHHHHHHHHh
Q 018970 158 HLVALDCGSGI-GRI-TKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (348)
Q Consensus 158 ~~~VLDvGcG~-G~~-~~~la~~~~~~v~~vD~S~~~l~~a~~~~ 200 (348)
+.+|+=||+|. |.. +..|...+...|++++.+....+...+.+
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~ 310 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF 310 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Confidence 57899999975 333 34444445557999999987776665544
No 409
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=64.01 E-value=16 Score=36.46 Aligned_cols=88 Identities=15% Similarity=0.040 Sum_probs=51.3
Q ss_pred CCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 156 ~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
-.+.+|+-+|+|. |......+.....+|+++|.++.....+... | +...++.++. ...|+|
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~----G-----------~~~~~leell---~~ADIV 313 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAME----G-----------YQVVTLEDVV---ETADIF 313 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhc----C-----------ceeccHHHHH---hcCCEE
Confidence 4567999999997 4443333333333699998877654333221 1 1112333321 357999
Q ss_pred eechhhhcCChhhHHHHH-HHHHHcCCCCcEEEEEe
Q 018970 235 WVQWCIGHLTDDDFVSFF-KRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l-~~~~~~LkpgG~lii~~ 269 (348)
++...- ..++ ++....||||++|+-..
T Consensus 314 I~atGt--------~~iI~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 314 VTATGN--------KDIITLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred EECCCc--------ccccCHHHHhccCCCcEEEEcC
Confidence 875321 1233 46778899999988753
No 410
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=63.97 E-value=90 Score=26.44 Aligned_cols=95 Identities=16% Similarity=0.115 Sum_probs=60.1
Q ss_pred CCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC---CC--CCCCc
Q 018970 156 NQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD---FT--PETGR 230 (348)
Q Consensus 156 ~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~---~~--~~~~~ 230 (348)
.+..+|+-|||=+-.....-.......+..+|.+...-... .+ .|.--|... ++ . .++
T Consensus 24 ~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~---------------~~-~F~fyD~~~p~~~~~~l-~~~ 86 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG---------------GD-EFVFYDYNEPEELPEEL-KGK 86 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC---------------Cc-ceEECCCCChhhhhhhc-CCC
Confidence 34579999999886554432011222799999886544311 11 244444433 22 2 378
Q ss_pred eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
||+|++-..+ +..+-..++.+.+.-++|+++.+++..
T Consensus 87 ~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 87 FDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred ceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEec
Confidence 9999998887 565556677777777778988888764
No 411
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=63.89 E-value=57 Score=30.18 Aligned_cols=91 Identities=18% Similarity=0.065 Sum_probs=54.3
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
+.++.+||=.|||. |..+..++......|+.++.++...+.+++ +.- +.. .+.... ....+|+
T Consensus 165 ~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~-~g~------------~~~-~~~~~~--~~~~vD~ 228 (329)
T cd08298 165 LKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE-LGA------------DWA-GDSDDL--PPEPLDA 228 (329)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH-hCC------------cEE-eccCcc--CCCcccE
Confidence 55677888887764 444444554444468999888877777743 211 110 111111 1245888
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
++.... . ...+..+.+.|+++|.++...
T Consensus 229 vi~~~~-------~-~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 229 AIIFAP-------V-GALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred EEEcCC-------c-HHHHHHHHHHhhcCCEEEEEc
Confidence 774311 1 136778899999999998754
No 412
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=63.55 E-value=50 Score=33.34 Aligned_cols=44 Identities=11% Similarity=0.014 Sum_probs=34.2
Q ss_pred CCCcEEEEeccccHHHHHHHHhC-----CCcEEEEcCCHHHHHHHHHHh
Q 018970 157 QHLVALDCGSGIGRITKNLLIRY-----FNEVDLLEPVSHFLDAARESL 200 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la~~~-----~~~v~~vD~S~~~l~~a~~~~ 200 (348)
+...|.|.-||+|.+........ ...+++.+..+.+...++.+.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm 265 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNM 265 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHH
Confidence 55789999999999887644321 126899999999999998764
No 413
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=63.33 E-value=2.4 Score=36.06 Aligned_cols=44 Identities=14% Similarity=0.015 Sum_probs=32.8
Q ss_pred CCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHh
Q 018970 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (348)
Q Consensus 157 ~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~ 200 (348)
++.+|+=+|.|. |.-+..++.....+|+..|..+..++..+...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~ 63 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLG 63 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhccc
Confidence 457999999997 66677777776668999999988887776544
No 414
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=62.64 E-value=49 Score=29.94 Aligned_cols=74 Identities=16% Similarity=0.066 Sum_probs=44.6
Q ss_pred CCcEEEEeccccH---HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--------
Q 018970 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------- 226 (348)
Q Consensus 158 ~~~VLDvGcG~G~---~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-------- 226 (348)
+.++|-.|++.|. ++..|++++. .|.+++.++..++...+.+... ..++.+..+|+.+...
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~v~~~~~~~ 81 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAA-------GGEALAVKADVLDKESLEQARQQI 81 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc-------CCeEEEEECCCCCHHHHHHHHHHH
Confidence 3567877775442 3444555566 5999998877666555444321 2346777888876430
Q ss_pred --CCCceeEEeechh
Q 018970 227 --ETGRYDVIWVQWC 239 (348)
Q Consensus 227 --~~~~fD~Ii~~~~ 239 (348)
.-+.+|+++.+..
T Consensus 82 ~~~~g~id~li~~ag 96 (278)
T PRK08277 82 LEDFGPCDILINGAG 96 (278)
T ss_pred HHHcCCCCEEEECCC
Confidence 0146899887543
No 415
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=62.58 E-value=27 Score=32.36 Aligned_cols=99 Identities=18% Similarity=0.222 Sum_probs=54.9
Q ss_pred CcEEEEeccc-c-HHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCC----------CCCCcC----CCcceeEEEcCCC
Q 018970 159 LVALDCGSGI-G-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPE----------NHMAPD----MHKATNFFCVPLQ 222 (348)
Q Consensus 159 ~~VLDvGcG~-G-~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~----------~~~~~~----~~~~i~~~~~d~~ 222 (348)
.+|.=||||. | .++..++..+. .|+++|.+++.++.+++.+... +..... ...++.+ ..|..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCHH
Confidence 3688899995 3 35555665666 5999999999998776543221 000000 0001111 11221
Q ss_pred CCCCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970 223 DFTPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (348)
Q Consensus 223 ~~~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~li 266 (348)
.+ ...|+|+.+-. ... +....+++++...++|+..|+
T Consensus 82 ~~----~~aDlVieav~-e~~--~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 SL----SDADFIVEAVP-EKL--DLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred Hh----CCCCEEEEcCc-CcH--HHHHHHHHHHHhhCCCCeEEE
Confidence 11 34688886432 111 124678888888888876554
No 416
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=62.19 E-value=70 Score=30.19 Aligned_cols=96 Identities=19% Similarity=0.115 Sum_probs=55.0
Q ss_pred CCCCcEEEEeccc-cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCC-------CCCCC
Q 018970 156 NQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL-------QDFTP 226 (348)
Q Consensus 156 ~~~~~VLDvGcG~-G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~-------~~~~~ 226 (348)
.++.+||=.|+|. |..+..++..... .|++++.++...+.+++ +.. ..-+.....+. ....
T Consensus 176 ~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~-~g~--------~~vi~~~~~~~~~~~~~i~~~~- 245 (361)
T cd08231 176 GAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE-FGA--------DATIDIDELPDPQRRAIVRDIT- 245 (361)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCC--------CeEEcCcccccHHHHHHHHHHh-
Confidence 3677888888753 5555666655444 69999988887777653 221 00011111111 1111
Q ss_pred CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 227 ~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
....+|+|+-.-.- ...+....+.|+++|.++...
T Consensus 246 ~~~~~d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 246 GGRGADVVIEASGH--------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCCCCcEEEECCCC--------hHHHHHHHHHhccCCEEEEEc
Confidence 12468998853210 135667788999999998754
No 417
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=62.03 E-value=75 Score=29.87 Aligned_cols=97 Identities=14% Similarity=0.047 Sum_probs=57.3
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCC----CCCCCCC
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~----~~~~~~~ 228 (348)
..++.+||-.|+|. |..+..+++.. ...+.++|.++...+.+++. .. ..-+.....++ ..+. ..
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~--------~~~v~~~~~~~~~~i~~~~-~~ 233 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY-GA--------TDIVDYKNGDVVEQILKLT-GG 233 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CC--------ceEecCCCCCHHHHHHHHh-CC
Confidence 56678899998763 55666666553 33589999988888777652 11 00011111111 0111 12
Q ss_pred CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
..+|+|+.+-. -...+..+.+.|+++|.++...
T Consensus 234 ~~~d~vld~~g--------~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 234 KGVDAVIIAGG--------GQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CCCcEEEECCC--------CHHHHHHHHHHhhcCCEEEEec
Confidence 35898885322 0246778889999999988653
No 418
>PRK08507 prephenate dehydrogenase; Validated
Probab=61.97 E-value=32 Score=31.50 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=49.8
Q ss_pred cEEEEeccc--cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970 160 VALDCGSGI--GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (348)
Q Consensus 160 ~VLDvGcG~--G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~ 236 (348)
+|.=||+|. |.++..|...+.. .|+++|.++..++.+.+. |. +.. ..+..+. ...|+|+.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~----g~--------~~~-~~~~~~~----~~aD~Vil 64 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL----GL--------VDE-IVSFEEL----KKCDVIFL 64 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC----CC--------Ccc-cCCHHHH----hcCCEEEE
Confidence 467788886 4466666655543 699999999887776532 11 100 1122221 12688887
Q ss_pred chhhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (348)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~li 266 (348)
+-... ....+++.+.. +++|..++
T Consensus 65 avp~~-----~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 65 AIPVD-----AIIEILPKLLD-IKENTTII 88 (275)
T ss_pred eCcHH-----HHHHHHHHHhc-cCCCCEEE
Confidence 55433 45567777777 77776444
No 419
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=61.74 E-value=27 Score=33.64 Aligned_cols=95 Identities=17% Similarity=0.020 Sum_probs=52.1
Q ss_pred CCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHH-HHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 156 NQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHF-LDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 156 ~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~-l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
.++.+||-.|+|. |..+..+++.....|++++.+++. .+.+++ +.. ..-+.. .+...+....+.+|+
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~-lGa--------~~~i~~--~~~~~v~~~~~~~D~ 245 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR-LGA--------DSFLVT--TDSQKMKEAVGTMDF 245 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh-CCC--------cEEEcC--cCHHHHHHhhCCCcE
Confidence 4677888888864 556666665544468888876544 444432 211 000000 000001000124788
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
|+-.-. . ...+..+.+.|++||.++...
T Consensus 246 vid~~G-------~-~~~~~~~~~~l~~~G~iv~vG 273 (375)
T PLN02178 246 IIDTVS-------A-EHALLPLFSLLKVSGKLVALG 273 (375)
T ss_pred EEECCC-------c-HHHHHHHHHhhcCCCEEEEEc
Confidence 875321 1 135677888999999998764
No 420
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=61.51 E-value=44 Score=31.17 Aligned_cols=99 Identities=15% Similarity=0.055 Sum_probs=53.7
Q ss_pred cEEEEeccc-c-HHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCC-CCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970 160 VALDCGSGI-G-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN-HMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (348)
Q Consensus 160 ~VLDvGcG~-G-~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~-~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~ 236 (348)
+|.=||+|. | .++..|+..+. .|+++|.++..++..++...... .........+.+ ..+..+. ....|+|+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~D~vi~ 77 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEA---LADADLILV 77 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHH---HhCCCEEEE
Confidence 578888875 3 34555554555 59999999888877665421100 000000001111 1122111 135688887
Q ss_pred chhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
+-.-. ....+++.+...++++..++..
T Consensus 78 ~v~~~-----~~~~v~~~l~~~~~~~~~vi~~ 104 (325)
T PRK00094 78 AVPSQ-----ALREVLKQLKPLLPPDAPIVWA 104 (325)
T ss_pred eCCHH-----HHHHHHHHHHhhcCCCCEEEEE
Confidence 54432 4567778888888887665543
No 421
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=61.37 E-value=34 Score=33.78 Aligned_cols=107 Identities=16% Similarity=0.181 Sum_probs=69.6
Q ss_pred CCCCcEEEEec-ccc------HHHHHHHHhCCC-cEEEEc-CCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-
Q 018970 156 NQHLVALDCGS-GIG------RITKNLLIRYFN-EVDLLE-PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT- 225 (348)
Q Consensus 156 ~~~~~VLDvGc-G~G------~~~~~la~~~~~-~v~~vD-~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~- 225 (348)
+++..||=+|= |+| -++.++..++.. -+.+.| .=|.+++..+..... ..+.|+..+-+.-|
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q---------~~v~~f~~~~~~~Pv 168 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQ---------VGVPFFGSGTEKDPV 168 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHH---------cCCceecCCCCCCHH
Confidence 45677888873 333 455666554444 577778 456777888777654 23555554322222
Q ss_pred ---------CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecc
Q 018970 226 ---------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENI 271 (348)
Q Consensus 226 ---------~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 271 (348)
.....||+|+.--+=.|-.|+++-.-++++.+.++|.=.|++.+..
T Consensus 169 ~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam 223 (451)
T COG0541 169 EIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAM 223 (451)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 1135689999855444444567888899999999999999998743
No 422
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=61.03 E-value=33 Score=32.30 Aligned_cols=97 Identities=22% Similarity=0.108 Sum_probs=57.0
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCC----CCCCCCC
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~----~~~~~~~ 228 (348)
..++.+||=.|+|. |..+..+++.... .|.+++.++...+.+++. .. ..-++....++ .++. ..
T Consensus 170 ~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-ga--------~~~i~~~~~~~~~~l~~~~-~~ 239 (351)
T cd08233 170 FKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-GA--------TIVLDPTEVDVVAEVRKLT-GG 239 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC--------CEEECCCccCHHHHHHHHh-CC
Confidence 56677888888653 5555666655433 689999999888887653 21 00111111111 0111 11
Q ss_pred CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+.+|+|+-+... ...++.+.+.|+++|.++...
T Consensus 240 ~~~d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 240 GGVDVSFDCAGV--------QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred CCCCEEEECCCC--------HHHHHHHHHhccCCCEEEEEc
Confidence 348999854321 135677888999999988754
No 423
>PRK07985 oxidoreductase; Provisional
Probab=60.96 E-value=63 Score=29.79 Aligned_cols=104 Identities=14% Similarity=0.057 Sum_probs=56.2
Q ss_pred CCcEEEEeccccH---HHHHHHHhCCCcEEEEcCC--HHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-------
Q 018970 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPV--SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (348)
Q Consensus 158 ~~~VLDvGcG~G~---~~~~la~~~~~~v~~vD~S--~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (348)
+.++|-.|++.|. ++..|++++.. |.+++.+ ...++...+..... +.++.++.+|+.+..
T Consensus 49 ~k~vlITGas~gIG~aia~~L~~~G~~-Vi~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~ 120 (294)
T PRK07985 49 DRKALVTGGDSGIGRAAAIAYAREGAD-VAISYLPVEEEDAQDVKKIIEEC-------GRKAVLLPGDLSDEKFARSLVH 120 (294)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCCE-EEEecCCcchhhHHHHHHHHHHc-------CCeEEEEEccCCCHHHHHHHHH
Confidence 3578988875432 44555555654 7777643 23334443333221 234667778887632
Q ss_pred ---CCCCceeEEeechhh-------hcCChhhHH-----------HHHHHHHHcCCCCcEEEEEe
Q 018970 226 ---PETGRYDVIWVQWCI-------GHLTDDDFV-----------SFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 226 ---~~~~~fD~Ii~~~~l-------~~~~~~d~~-----------~~l~~~~~~LkpgG~lii~~ 269 (348)
..-+..|+++.+... ...+.+++. .+++.+...|+.+|.+++..
T Consensus 121 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 121 EAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred HHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 012467888865432 222323332 35566666777788777643
No 424
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=60.70 E-value=28 Score=32.56 Aligned_cols=98 Identities=14% Similarity=0.051 Sum_probs=55.7
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
..++.+||=.|||. |..+..++......|+.++.++.-++.+++. ... .-+.....+..+.......+|+
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~-g~~--------~~i~~~~~~~~~~~~~~~~~d~ 231 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKL-GAH--------HYIDTSKEDVAEALQELGGAKL 231 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-CCc--------EEecCCCccHHHHHHhcCCCCE
Confidence 55677899998653 5555666655443699999988888888542 210 0011111111000000124788
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
|+.... . ...+..+.+.|+++|.++...
T Consensus 232 vi~~~g----~----~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 232 ILATAP----N----AKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred EEECCC----c----hHHHHHHHHHcccCCEEEEEe
Confidence 874211 1 246677888999999988753
No 425
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=60.61 E-value=59 Score=33.24 Aligned_cols=92 Identities=12% Similarity=0.008 Sum_probs=53.7
Q ss_pred CcEEEEeccc-cHHHHHHH-HhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCcee
Q 018970 159 LVALDCGSGI-GRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (348)
Q Consensus 159 ~~VLDvGcG~-G~~~~~la-~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD 232 (348)
.+|+=+|||. |......+ +++. .|+.+|.+++.++.+++. ......+|..+.. ..-+..|
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~-------------g~~~i~GD~~~~~~L~~a~i~~a~ 483 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRER-------------GIRAVLGNAANEEIMQLAHLDCAR 483 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHC-------------CCeEEEcCCCCHHHHHhcCccccC
Confidence 5788888875 44333333 3344 599999999999888752 2567778887632 1224678
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
.+++.-. +++-...+-.+.+.+.|...++...
T Consensus 484 ~viv~~~-----~~~~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 484 WLLLTIP-----NGYEAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred EEEEEcC-----ChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 6654221 1121222333445567777766653
No 426
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=60.49 E-value=50 Score=31.07 Aligned_cols=97 Identities=16% Similarity=0.079 Sum_probs=54.0
Q ss_pred cEEEEeccc--cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (348)
Q Consensus 160 ~VLDvGcG~--G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~ 237 (348)
+|+-+|||. |.++..|++.+ ..|+.+--++. ++..++. |+.-.....+..+...-.. -+...+.+|+|+..
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~-~~~l~~~----GL~i~~~~~~~~~~~~~~~-~~~~~~~~Dlviv~ 74 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR-LEALKKK----GLRIEDEGGNFTTPVVAAT-DAEALGPADLVIVT 74 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH-HHHHHhC----CeEEecCCCcccccccccc-ChhhcCCCCEEEEE
Confidence 688899995 45666666666 55666665554 5555543 2210000010011111000 01112479999874
Q ss_pred hhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
-=-+ +...+++.+...++|...+++.
T Consensus 75 vKa~-----q~~~al~~l~~~~~~~t~vl~l 100 (307)
T COG1893 75 VKAY-----QLEEALPSLAPLLGPNTVVLFL 100 (307)
T ss_pred eccc-----cHHHHHHHhhhcCCCCcEEEEE
Confidence 3322 5678999999999999877764
No 427
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=59.88 E-value=26 Score=32.38 Aligned_cols=100 Identities=13% Similarity=0.179 Sum_probs=54.8
Q ss_pred cEEEEeccc--cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCC-------CCCCCcC----CCcceeEEEcCCCCCCC
Q 018970 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAP-------ENHMAPD----MHKATNFFCVPLQDFTP 226 (348)
Q Consensus 160 ~VLDvGcG~--G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~-------~~~~~~~----~~~~i~~~~~d~~~~~~ 226 (348)
+|.=||+|. +.++..++..++. |+++|.+++.++.+.+.... .+..... ...++.+ ..++.+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~-- 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQ-TTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA-- 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCc-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh--
Confidence 688899985 2355555656664 99999999999887654211 0000000 0001221 1232221
Q ss_pred CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (348)
Q Consensus 227 ~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii 267 (348)
-...|+|+.+-.-. . +-...++.++.+.++|+..+.+
T Consensus 79 -~~~aD~Vi~avpe~-~--~~k~~~~~~l~~~~~~~~il~~ 115 (288)
T PRK09260 79 -VADADLVIEAVPEK-L--ELKKAVFETADAHAPAECYIAT 115 (288)
T ss_pred -hcCCCEEEEeccCC-H--HHHHHHHHHHHhhCCCCcEEEE
Confidence 13468888643311 0 1134677888888888776654
No 428
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=59.10 E-value=65 Score=33.51 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=56.8
Q ss_pred CCcEEEEeccc-cHHHHHHHHh-CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCce
Q 018970 158 HLVALDCGSGI-GRITKNLLIR-YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (348)
Q Consensus 158 ~~~VLDvGcG~-G~~~~~la~~-~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~f 231 (348)
..+|+=+|||. |......+.+ +. .++.+|.+++.++.+++. ...++.+|..+.. ..-++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-------------g~~v~~GDat~~~~L~~agi~~A 465 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF-------------GMKVFYGDATRMDLLESAGAAKA 465 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc-------------CCeEEEEeCCCHHHHHhcCCCcC
Confidence 46899999986 5544443333 45 599999999999988652 1456777877643 122467
Q ss_pred eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
|++++... +++....+-...+.+.|.-.+++.
T Consensus 466 ~~vvv~~~-----d~~~n~~i~~~ar~~~p~~~iiaR 497 (621)
T PRK03562 466 EVLINAID-----DPQTSLQLVELVKEHFPHLQIIAR 497 (621)
T ss_pred CEEEEEeC-----CHHHHHHHHHHHHHhCCCCeEEEE
Confidence 88776432 222223333445556777776664
No 429
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=59.09 E-value=39 Score=31.62 Aligned_cols=99 Identities=16% Similarity=0.050 Sum_probs=49.8
Q ss_pred CCcEEEEeccc-cH-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 158 HLVALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 158 ~~~VLDvGcG~-G~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
..+|+=||+|. |. ++..|++.+. +|+.+.-++ .+..+++ |+.-........+........+...+.+|+|+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~--~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 77 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD--YEAVREN----GLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVL 77 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC--HHHHHhC----CeEEEeCCCCeeecCceEEcchhhcCCCCEEE
Confidence 35799999985 44 5555554454 588877654 2222221 11000000011110000111111125789998
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
..---+ +...+++.+...++|++.++..
T Consensus 78 lavK~~-----~~~~~~~~l~~~~~~~~~iv~l 105 (313)
T PRK06249 78 VGLKTT-----ANALLAPLIPQVAAPDAKVLLL 105 (313)
T ss_pred EEecCC-----ChHhHHHHHhhhcCCCCEEEEe
Confidence 754333 2346777888888999887664
No 430
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=59.09 E-value=93 Score=29.57 Aligned_cols=98 Identities=13% Similarity=-0.003 Sum_probs=56.1
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcC--CCC-CC-CCC
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVP--LQD-FT-PET 228 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d--~~~-~~-~~~ 228 (348)
..++.+||=+|+|. |..+..+++.. ...|++++.++..++.+++. ... .-++....+ +.+ +. ...
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~-ga~--------~~i~~~~~~~~~~~~~~~~~~ 252 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF-GAT--------DFINPKDSDKPVSEVIREMTG 252 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCC--------cEeccccccchHHHHHHHHhC
Confidence 56778999998864 55556566554 33699999999888888653 210 001111100 000 00 011
Q ss_pred CceeEEeechhhhcCChhhHHHHHHHHHHcCCCC-cEEEEEe
Q 018970 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPG-GFFVLKE 269 (348)
Q Consensus 229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~Lkpg-G~lii~~ 269 (348)
+.+|+|+-.-. . ...+....+.|+++ |.+++..
T Consensus 253 ~g~d~vid~~g--~------~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 253 GGVDYSFECTG--N------ADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CCCCEEEECCC--C------hHHHHHHHHhcccCCCEEEEEc
Confidence 35898884321 0 13567778889885 9888754
No 431
>PRK07680 late competence protein ComER; Validated
Probab=58.86 E-value=47 Score=30.40 Aligned_cols=87 Identities=10% Similarity=0.105 Sum_probs=51.7
Q ss_pred cEEEEeccc--cHHHHHHHHhCC---CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 160 VALDCGSGI--GRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 160 ~VLDvGcG~--G~~~~~la~~~~---~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
+|.=||||. +.++..|.+.+. ..|.+.+.+++..+...+... .+.. ..+..+.. ...|+|
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~-----------g~~~-~~~~~~~~---~~aDiV 66 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP-----------GIHV-AKTIEEVI---SQSDLI 66 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC-----------CeEE-ECCHHHHH---HhCCEE
Confidence 477789887 335566665552 358999998877655544321 1222 12222221 346888
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~li 266 (348)
+..- ++.+...+++.+...++++..++
T Consensus 67 ilav-----~p~~~~~vl~~l~~~l~~~~~ii 93 (273)
T PRK07680 67 FICV-----KPLDIYPLLQKLAPHLTDEHCLV 93 (273)
T ss_pred EEec-----CHHHHHHHHHHHHhhcCCCCEEE
Confidence 7644 33456778888888888876544
No 432
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=58.36 E-value=37 Score=27.73 Aligned_cols=74 Identities=14% Similarity=0.074 Sum_probs=41.6
Q ss_pred CCCcEEEEeccc-c-HHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 157 QHLVALDCGSGI-G-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 157 ~~~~VLDvGcG~-G-~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
.+.+|+-+|||. | .++..++..+...|+++|.++...+...+.+... .+.....+..+. -..+|+|
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~---------~~~~~~~~~~~~---~~~~Dvv 85 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGEL---------GIAIAYLDLEEL---LAEADLI 85 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhc---------ccceeecchhhc---cccCCEE
Confidence 356899999974 2 2344444443446999999887776654443321 011112232222 2568999
Q ss_pred eechhhhc
Q 018970 235 WVQWCIGH 242 (348)
Q Consensus 235 i~~~~l~~ 242 (348)
++.-....
T Consensus 86 i~~~~~~~ 93 (155)
T cd01065 86 INTTPVGM 93 (155)
T ss_pred EeCcCCCC
Confidence 98655544
No 433
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=57.97 E-value=16 Score=32.10 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=24.8
Q ss_pred CCcEEEEeccc-cH-HHHHHHHhCCCcEEEEcCC
Q 018970 158 HLVALDCGSGI-GR-ITKNLLIRYFNEVDLLEPV 189 (348)
Q Consensus 158 ~~~VLDvGcG~-G~-~~~~la~~~~~~v~~vD~S 189 (348)
..+||=+|||. |. .+..|+..++.+++.+|.+
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 36899999995 44 5666676788789999977
No 434
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=57.87 E-value=41 Score=31.42 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=52.7
Q ss_pred CCCcEEEEeccccH---HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC--------
Q 018970 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-------- 225 (348)
Q Consensus 157 ~~~~VLDvGcG~G~---~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-------- 225 (348)
.+..||-=|+|.|. ++..+++++. .+...|++..-.+.-.+.+++. ..+....+|+.+..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~--------g~~~~y~cdis~~eei~~~a~~ 107 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKI--------GEAKAYTCDISDREEIYRLAKK 107 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhc--------CceeEEEecCCCHHHHHHHHHH
Confidence 35678888888873 5666676666 5899999998888777776653 24777888887643
Q ss_pred --CCCCceeEEeechhh
Q 018970 226 --PETGRYDVIWVQWCI 240 (348)
Q Consensus 226 --~~~~~fD~Ii~~~~l 240 (348)
.+-|..|+++.+..+
T Consensus 108 Vk~e~G~V~ILVNNAGI 124 (300)
T KOG1201|consen 108 VKKEVGDVDILVNNAGI 124 (300)
T ss_pred HHHhcCCceEEEecccc
Confidence 123678998865443
No 435
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=57.82 E-value=68 Score=28.66 Aligned_cols=101 Identities=13% Similarity=0.077 Sum_probs=55.4
Q ss_pred CCcEEEEecc----ccH-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-------
Q 018970 158 HLVALDCGSG----IGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (348)
Q Consensus 158 ~~~VLDvGcG----~G~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (348)
+.++|-.|++ .|. ++..|++.+. .|..++-+....+.+++.. ...+.++.+|+.+..
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~----------~~~~~~~~~Dl~~~~~v~~~~~ 75 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLV----------DEEDLLVECDVASDESIERAFA 75 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhc----------cCceeEEeCCCCCHHHHHHHHH
Confidence 4578888875 333 3455555565 4888876643333332221 123567778887642
Q ss_pred ---CCCCceeEEeechhhhc----------CChhhH-----------HHHHHHHHHcCCCCcEEEEEe
Q 018970 226 ---PETGRYDVIWVQWCIGH----------LTDDDF-----------VSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 226 ---~~~~~fD~Ii~~~~l~~----------~~~~d~-----------~~~l~~~~~~LkpgG~lii~~ 269 (348)
...+++|+++.+..+.. ++.+++ ..+.+.+...|+.+|.+++..
T Consensus 76 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~is 143 (252)
T PRK06079 76 TIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLT 143 (252)
T ss_pred HHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEe
Confidence 01257899887654322 222222 223455666677778776644
No 436
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=57.76 E-value=66 Score=31.61 Aligned_cols=99 Identities=15% Similarity=0.032 Sum_probs=53.4
Q ss_pred CcEEEEeccccH--HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCC---------CcceeEEEcCCCCCCCC
Q 018970 159 LVALDCGSGIGR--ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDM---------HKATNFFCVPLQDFTPE 227 (348)
Q Consensus 159 ~~VLDvGcG~G~--~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~---------~~~i~~~~~d~~~~~~~ 227 (348)
.+|.=||.|.-. ++..|++.++ +|+++|.++..++..+..... ...... .....+. .++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~g~~~--~~e~~l~~~l~~~~~~g~l~~~-~~~------ 73 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINRGEIH--IVEPDLDMVVKTAVEGGYLRAT-TTP------ 73 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHCCCCC--cCCCCHHHHHHHHhhcCceeee-ccc------
Confidence 368888988643 4555565666 499999999988764321100 000000 0011111 111
Q ss_pred CCceeEEeechhhhc----CCh-hhHHHHHHHHHHcCCCCcEEEEE
Q 018970 228 TGRYDVIWVQWCIGH----LTD-DDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 228 ~~~fD~Ii~~~~l~~----~~~-~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
...|+|+.+-.--. -++ .....+++.+...|++|-.+++.
T Consensus 74 -~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ 118 (415)
T PRK11064 74 -EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILE 118 (415)
T ss_pred -ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEe
Confidence 24688876443210 011 24566778889999887666554
No 437
>PRK08324 short chain dehydrogenase; Validated
Probab=57.49 E-value=55 Score=34.37 Aligned_cols=104 Identities=22% Similarity=0.143 Sum_probs=60.6
Q ss_pred CCCcEEEEeccc--cH-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----C--
Q 018970 157 QHLVALDCGSGI--GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT-----P-- 226 (348)
Q Consensus 157 ~~~~VLDvGcG~--G~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----~-- 226 (348)
.+.+||-.|++. |. ++..+++++. +|.++|.++..++.+.+.+.. ...+.+..+|+.+.. .
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~--------~~~v~~v~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGG--------PDRALGVACDVTDEAAVQAAFEE 491 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhc--------cCcEEEEEecCCCHHHHHHHHHH
Confidence 346788888633 33 3344444555 599999998877766655432 124677777876532 0
Q ss_pred ---CCCceeEEeechhhhc------CChhh-----------HHHHHHHHHHcCCC---CcEEEEEe
Q 018970 227 ---ETGRYDVIWVQWCIGH------LTDDD-----------FVSFFKRAKVGLKP---GGFFVLKE 269 (348)
Q Consensus 227 ---~~~~fD~Ii~~~~l~~------~~~~d-----------~~~~l~~~~~~Lkp---gG~lii~~ 269 (348)
..+.+|+|+.+..... .+.++ ...+++.+.+.++. ||.+++..
T Consensus 492 ~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 492 AALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 1246899987654322 11111 23456666777666 67777654
No 438
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=57.35 E-value=85 Score=28.51 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=54.7
Q ss_pred CCcEEEEeccc----cH-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-------
Q 018970 158 HLVALDCGSGI----GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (348)
Q Consensus 158 ~~~VLDvGcG~----G~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (348)
+..+|-.|++. |. ++..|++.+.. |..++-+....+..++..... + ...++.+|+.+..
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga~-V~~~~r~~~~~~~~~~~~~~~-------g-~~~~~~~Dv~d~~~v~~~~~ 77 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGAE-LAFTYQGEALGKRVKPLAESL-------G-SDFVLPCDVEDIASVDAVFE 77 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCE-EEEecCchHHHHHHHHHHHhc-------C-CceEEeCCCCCHHHHHHHHH
Confidence 35788888864 33 45556656664 888876643333333322211 1 1235667876642
Q ss_pred ---CCCCceeEEeechhhhc----------CChhhHHH-----------HHHHHHHcCCCCcEEEEEe
Q 018970 226 ---PETGRYDVIWVQWCIGH----------LTDDDFVS-----------FFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 226 ---~~~~~fD~Ii~~~~l~~----------~~~~d~~~-----------~l~~~~~~LkpgG~lii~~ 269 (348)
...+..|+++.+-.+.. ++.+++.. +.+.+...|+.+|.++...
T Consensus 78 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~is 145 (271)
T PRK06505 78 ALEKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLT 145 (271)
T ss_pred HHHHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEc
Confidence 11257899887654322 22233332 2345556666678766543
No 439
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=57.12 E-value=82 Score=29.29 Aligned_cols=115 Identities=19% Similarity=0.195 Sum_probs=62.8
Q ss_pred cEEEEeccc--cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (348)
Q Consensus 160 ~VLDvGcG~--G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~ 237 (348)
+|-=||+|. ..++..|++.+. +|.+.|.++..++.+.+. | +.. ..+..++.......|+|++.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~~----g---------~~~-~~~~~e~~~~~~~~dvvi~~ 66 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALAEE----G---------ATG-ADSLEELVAKLPAPRVVWLM 66 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHC----C---------Cee-cCCHHHHHhhcCCCCEEEEE
Confidence 466688886 235666766666 499999998877765431 1 111 11222211100124777764
Q ss_pred hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKS 306 (348)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~ 306 (348)
-.-. +....++..+...|++|..++-..... ..+...+.+.+++.|...++.
T Consensus 67 v~~~----~~~~~v~~~l~~~l~~g~ivid~st~~-------------~~~~~~~~~~~~~~g~~~~da 118 (301)
T PRK09599 67 VPAG----EITDATIDELAPLLSPGDIVIDGGNSY-------------YKDDIRRAELLAEKGIHFVDV 118 (301)
T ss_pred ecCC----cHHHHHHHHHHhhCCCCCEEEeCCCCC-------------hhHHHHHHHHHHHcCCEEEeC
Confidence 3211 145567777888888875443322111 012334667788888887763
No 440
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=56.93 E-value=34 Score=31.57 Aligned_cols=99 Identities=13% Similarity=0.117 Sum_probs=53.6
Q ss_pred cEEEEecccc--HHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCC--------CCCCCcC----CCcceeEEEcCCCCCC
Q 018970 160 VALDCGSGIG--RITKNLLIRYFNEVDLLEPVSHFLDAARESLAP--------ENHMAPD----MHKATNFFCVPLQDFT 225 (348)
Q Consensus 160 ~VLDvGcG~G--~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~--------~~~~~~~----~~~~i~~~~~d~~~~~ 225 (348)
+|.=||+|.- .++..++..+. .|+++|.+++.++.+++.+.. ..+.... ...++.+ ..|+.+.
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a- 81 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEA- 81 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHH-
Confidence 6888999863 24444454455 599999999998888765311 0000000 0012222 2233221
Q ss_pred CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (348)
Q Consensus 226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~li 266 (348)
-...|+|+.+-. ..+ +-...+++++...++++-.|.
T Consensus 82 --~~~aDlVieavp-e~~--~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 82 --VKDADLVIEAVP-EDP--EIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred --hcCCCEEEEecc-CCH--HHHHHHHHHHHhhCCCCCEEE
Confidence 134688886533 111 124567888888887776553
No 441
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.91 E-value=86 Score=28.59 Aligned_cols=103 Identities=12% Similarity=0.055 Sum_probs=55.6
Q ss_pred CCcEEEEecc----ccH-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-------
Q 018970 158 HLVALDCGSG----IGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (348)
Q Consensus 158 ~~~VLDvGcG----~G~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (348)
+..+|-.|++ .|. ++..|++.+. .|..++.+....+.+++..... ... .++.+|+.+..
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~-------~~~-~~~~~Dv~d~~~v~~~~~ 75 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQEL-------GSD-YVYELDVSKPEHFKSLAE 75 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhc-------CCc-eEEEecCCCHHHHHHHHH
Confidence 4578889974 343 3455555566 4888887753222222222211 112 45667887643
Q ss_pred ---CCCCceeEEeechhhh----------cCChhhHH-----------HHHHHHHHcCCCCcEEEEEe
Q 018970 226 ---PETGRYDVIWVQWCIG----------HLTDDDFV-----------SFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 226 ---~~~~~fD~Ii~~~~l~----------~~~~~d~~-----------~~l~~~~~~LkpgG~lii~~ 269 (348)
...+.+|+++.+..+. ..+.+++. .+.+.+...|+.+|.+++..
T Consensus 76 ~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~is 143 (274)
T PRK08415 76 SLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLS 143 (274)
T ss_pred HHHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEe
Confidence 1125789988765442 12223322 23456666777778776654
No 442
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=56.62 E-value=1.1e+02 Score=30.05 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=41.3
Q ss_pred CCCcEEEEecc-ccHH-HHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 157 QHLVALDCGSG-IGRI-TKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 157 ~~~~VLDvGcG-~G~~-~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
.+.+||=||+| .|.+ +.+|+.+++..++.+.=. .+.|++.+.+. ......++++..--..+|+|
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT---~erA~~La~~~-----------~~~~~~l~el~~~l~~~DvV 242 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRT---LERAEELAKKL-----------GAEAVALEELLEALAEADVV 242 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCC---HHHHHHHHHHh-----------CCeeecHHHHHHhhhhCCEE
Confidence 56789999999 6665 566676777778888754 44444443331 11223333333222579999
Q ss_pred eech
Q 018970 235 WVQW 238 (348)
Q Consensus 235 i~~~ 238 (348)
|++-
T Consensus 243 issT 246 (414)
T COG0373 243 ISST 246 (414)
T ss_pred EEec
Confidence 9864
No 443
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=56.33 E-value=43 Score=32.89 Aligned_cols=67 Identities=18% Similarity=0.036 Sum_probs=42.4
Q ss_pred CCCcEEEEeccccHHHHHHH---HhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCC
Q 018970 157 QHLVALDCGSGIGRITKNLL---IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETG 229 (348)
Q Consensus 157 ~~~~VLDvGcG~G~~~~~la---~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~ 229 (348)
...+|+=+|+|. ++..++ ......|+++|.+++.++.+++... .+.+..+|..+.. ..-.
T Consensus 230 ~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~-----------~~~~i~gd~~~~~~L~~~~~~ 296 (453)
T PRK09496 230 PVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEELP-----------NTLVLHGDGTDQELLEEEGID 296 (453)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCC-----------CCeEEECCCCCHHHHHhcCCc
Confidence 457899999965 333333 2322359999999999888776532 2456667765432 1224
Q ss_pred ceeEEee
Q 018970 230 RYDVIWV 236 (348)
Q Consensus 230 ~fD~Ii~ 236 (348)
.+|.|++
T Consensus 297 ~a~~vi~ 303 (453)
T PRK09496 297 EADAFIA 303 (453)
T ss_pred cCCEEEE
Confidence 6788875
No 444
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=56.22 E-value=20 Score=30.62 Aligned_cols=108 Identities=16% Similarity=0.070 Sum_probs=59.1
Q ss_pred CCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 157 QHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 157 ~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
.+.+|.=+|+|. |.-...+++.+.-+|.+.|.+......... ..+...+++++- ...|+|+
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~---------------~~~~~~~l~ell---~~aDiv~ 96 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADE---------------FGVEYVSLDELL---AQADIVS 96 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHH---------------TTEEESSHHHHH---HH-SEEE
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccc---------------ccceeeehhhhc---chhhhhh
Confidence 457899999985 555444554444479999998876552221 112333444432 3579998
Q ss_pred echhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHh
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSR 298 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~ 298 (348)
....+..-+ ..-+=++....||+|.+|+-.. .+. ..+.+.+.+.+++
T Consensus 97 ~~~plt~~T---~~li~~~~l~~mk~ga~lvN~a----RG~---------~vde~aL~~aL~~ 143 (178)
T PF02826_consen 97 LHLPLTPET---RGLINAEFLAKMKPGAVLVNVA----RGE---------LVDEDALLDALES 143 (178)
T ss_dssp E-SSSSTTT---TTSBSHHHHHTSTTTEEEEESS----SGG---------GB-HHHHHHHHHT
T ss_pred hhhcccccc---ceeeeeeeeeccccceEEEecc----chh---------hhhhhHHHHHHhh
Confidence 766542211 1112245667789988776532 111 1345567777766
No 445
>PRK06701 short chain dehydrogenase; Provisional
Probab=56.21 E-value=68 Score=29.47 Aligned_cols=104 Identities=16% Similarity=0.131 Sum_probs=55.1
Q ss_pred CCcEEEEeccccH---HHHHHHHhCCCcEEEEcCCH-HHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-------
Q 018970 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVS-HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------- 226 (348)
Q Consensus 158 ~~~VLDvGcG~G~---~~~~la~~~~~~v~~vD~S~-~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~------- 226 (348)
+.+||-.|++.|. ++..+++++. +|.+++.+. ..++.....+... ..++.++.+|+.+...
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~ 117 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKE-------GVKCLLIPGDVSDEAFCKDAVEE 117 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhc-------CCeEEEEEccCCCHHHHHHHHHH
Confidence 4578888865442 3444555555 488887654 2233333333221 2356778888876331
Q ss_pred ---CCCceeEEeechhhhc-------CChhh-----------HHHHHHHHHHcCCCCcEEEEEe
Q 018970 227 ---ETGRYDVIWVQWCIGH-------LTDDD-----------FVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 227 ---~~~~fD~Ii~~~~l~~-------~~~~d-----------~~~~l~~~~~~LkpgG~lii~~ 269 (348)
..+..|+|+.+....+ .+.++ ...+++.+...++++|.+++..
T Consensus 118 i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 118 TVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred HHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 0135788885543221 11111 2334556666667778777654
No 446
>PRK10083 putative oxidoreductase; Provisional
Probab=55.87 E-value=52 Score=30.64 Aligned_cols=98 Identities=23% Similarity=0.185 Sum_probs=55.4
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHh--CCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC-CCCCCCc
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIR--YFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD-FTPETGR 230 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~--~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~ 230 (348)
..++.+||=.|+|. |..+..+++. +...+.+++.++...+.+++.-.+. -++....++.. +......
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~---------~i~~~~~~~~~~~~~~g~~ 228 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADW---------VINNAQEPLGEALEEKGIK 228 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcE---------EecCccccHHHHHhcCCCC
Confidence 56778899999764 4555566653 5546888998888888776542211 01111101100 1101123
Q ss_pred eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+|+|+.... . ...+..+.+.|+++|.++...
T Consensus 229 ~d~vid~~g-------~-~~~~~~~~~~l~~~G~~v~~g 259 (339)
T PRK10083 229 PTLIIDAAC-------H-PSILEEAVTLASPAARIVLMG 259 (339)
T ss_pred CCEEEECCC-------C-HHHHHHHHHHhhcCCEEEEEc
Confidence 456664221 1 135677888999999998754
No 447
>PRK07109 short chain dehydrogenase; Provisional
Probab=55.60 E-value=66 Score=30.39 Aligned_cols=74 Identities=18% Similarity=0.093 Sum_probs=45.1
Q ss_pred CCcEEEEeccccH---HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--------
Q 018970 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------- 226 (348)
Q Consensus 158 ~~~VLDvGcG~G~---~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-------- 226 (348)
+.+||-.|++.|. ++..+++++. +|.+++-++..++...+.+... +.++.++.+|+.+...
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~-------g~~~~~v~~Dv~d~~~v~~~~~~~ 79 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAA-------GGEALAVVADVADAEAVQAAADRA 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHc-------CCcEEEEEecCCCHHHHHHHHHHH
Confidence 3578888865442 3344455565 5999998887776665554332 2346677888876430
Q ss_pred --CCCceeEEeechh
Q 018970 227 --ETGRYDVIWVQWC 239 (348)
Q Consensus 227 --~~~~fD~Ii~~~~ 239 (348)
.-+.+|+++.+-.
T Consensus 80 ~~~~g~iD~lInnAg 94 (334)
T PRK07109 80 EEELGPIDTWVNNAM 94 (334)
T ss_pred HHHCCCCCEEEECCC
Confidence 1246898886543
No 448
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=55.40 E-value=26 Score=32.77 Aligned_cols=45 Identities=18% Similarity=0.117 Sum_probs=35.7
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHh
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDAARESL 200 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~ 200 (348)
...+.+|+-+|+|...+..++. +.+.+|++||+++..|..-+-++
T Consensus 61 ~g~ghrivtigSGGcn~L~yls-r~Pa~id~VDlN~ahiAln~lkl 105 (414)
T COG5379 61 LGIGHRIVTIGSGGCNMLAYLS-RAPARIDVVDLNPAHIALNRLKL 105 (414)
T ss_pred cCCCcEEEEecCCcchHHHHhh-cCCceeEEEeCCHHHHHHHHHHH
Confidence 4566799999999877777654 77888999999999987765443
No 449
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=54.92 E-value=96 Score=29.08 Aligned_cols=100 Identities=10% Similarity=0.061 Sum_probs=54.2
Q ss_pred cEEEEeccc-cH-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCC-CCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970 160 VALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPEN-HMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (348)
Q Consensus 160 ~VLDvGcG~-G~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~-~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~ 236 (348)
+|.=||||. |. ++..|++.+. .|+.++.+++.++..++.-.... +.......++.+. .|..+.. .+.+|+|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~--~~~~Dliii 77 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEVL--SDNATCIIL 77 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHHH--hCCCCEEEE
Confidence 478899985 44 4555554454 59999988877776655311100 0000011122221 1221110 135788876
Q ss_pred chhhhcCChhhHHHHHHHHHH-cCCCCcEEEEE
Q 018970 237 QWCIGHLTDDDFVSFFKRAKV-GLKPGGFFVLK 268 (348)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~~-~LkpgG~lii~ 268 (348)
.-- +.++..+++.+.. .++++..+++.
T Consensus 78 avk-----s~~~~~~l~~l~~~~l~~~~~vv~~ 105 (326)
T PRK14620 78 AVP-----TQQLRTICQQLQDCHLKKNTPILIC 105 (326)
T ss_pred EeC-----HHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 432 3356788888887 88887766554
No 450
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=54.84 E-value=40 Score=31.96 Aligned_cols=100 Identities=15% Similarity=0.038 Sum_probs=60.5
Q ss_pred ccCCCCCcEEEEecc-ccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEE-EcCCCC-CC-CCC
Q 018970 153 ARNNQHLVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFF-CVPLQD-FT-PET 228 (348)
Q Consensus 153 ~~~~~~~~VLDvGcG-~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~-~~d~~~-~~-~~~ 228 (348)
.+..++.+|--+|.| -|.++..+++...-+|+++|-|..--+.+-+.+... ..+.+. ..|.-. .. .-+
T Consensus 177 ~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd--------~fv~~~~d~d~~~~~~~~~d 248 (360)
T KOG0023|consen 177 SGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGAD--------VFVDSTEDPDIMKAIMKTTD 248 (360)
T ss_pred cCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcc--------eeEEecCCHHHHHHHHHhhc
Confidence 446688887777755 699999998877668999999986677776666542 112222 111111 00 012
Q ss_pred CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEec
Q 018970 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKEN 270 (348)
Q Consensus 229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~ 270 (348)
+-.|.|... + ...+..+.+.||++|.+++...
T Consensus 249 g~~~~v~~~-a---------~~~~~~~~~~lk~~Gt~V~vg~ 280 (360)
T KOG0023|consen 249 GGIDTVSNL-A---------EHALEPLLGLLKVNGTLVLVGL 280 (360)
T ss_pred Ccceeeeec-c---------ccchHHHHHHhhcCCEEEEEeC
Confidence 233444322 1 1345667788999999998653
No 451
>PRK07806 short chain dehydrogenase; Provisional
Probab=54.65 E-value=81 Score=27.77 Aligned_cols=104 Identities=17% Similarity=0.042 Sum_probs=53.5
Q ss_pred CCcEEEEeccc--cH-HHHHHHHhCCCcEEEEcCCH-HHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-------
Q 018970 158 HLVALDCGSGI--GR-ITKNLLIRYFNEVDLLEPVS-HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------- 226 (348)
Q Consensus 158 ~~~VLDvGcG~--G~-~~~~la~~~~~~v~~vD~S~-~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~------- 226 (348)
+.+||-.|+.. |. +...|++++. +|.+++-+. ..++.....+... ..++.++.+|+.+...
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~-------~~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAA-------GGRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhc-------CCceEEEEcCCCCHHHHHHHHHH
Confidence 35788888643 33 3344444555 487776543 2333333322211 2346677778776421
Q ss_pred ---CCCceeEEeechhhhcCCh-----------hhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 227 ---ETGRYDVIWVQWCIGHLTD-----------DDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 227 ---~~~~fD~Ii~~~~l~~~~~-----------~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
..+..|+|+.+.......+ .-...+++.+...++.+|.+++..
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 78 AREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred HHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 0135788775543221110 013456777777776677666643
No 452
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=54.33 E-value=29 Score=29.75 Aligned_cols=100 Identities=16% Similarity=0.193 Sum_probs=55.1
Q ss_pred cEEEEeccc-c-HHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCC-------CCCCCc----CCCcceeEEEcCCCCCCC
Q 018970 160 VALDCGSGI-G-RITKNLLIRYFNEVDLLEPVSHFLDAARESLAP-------ENHMAP----DMHKATNFFCVPLQDFTP 226 (348)
Q Consensus 160 ~VLDvGcG~-G-~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~-------~~~~~~----~~~~~i~~~~~d~~~~~~ 226 (348)
+|.-||+|+ | .++..++..++ +|+.+|.+++.++.+++.+.. .+.... ....++.+ ..|+.+..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~~dl~~~~- 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-TTDLEEAV- 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-ESSGGGGC-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-ccCHHHHh-
Confidence 366788887 3 24444555555 599999999999888775532 111110 00122332 33544432
Q ss_pred CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 227 ~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
..|+|+=+-. +.+ +--..+++++.+.+.|+-.|.-.
T Consensus 78 ---~adlViEai~-E~l--~~K~~~~~~l~~~~~~~~ilasn 113 (180)
T PF02737_consen 78 ---DADLVIEAIP-EDL--ELKQELFAELDEICPPDTILASN 113 (180)
T ss_dssp ---TESEEEE-S--SSH--HHHHHHHHHHHCCS-TTSEEEE-
T ss_pred ---hhheehhhcc-ccH--HHHHHHHHHHHHHhCCCceEEec
Confidence 4677764321 211 13467999999999888877653
No 453
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=54.27 E-value=86 Score=29.13 Aligned_cols=114 Identities=21% Similarity=0.169 Sum_probs=60.6
Q ss_pred cEEEEeccc--cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (348)
Q Consensus 160 ~VLDvGcG~--G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~ 237 (348)
+|-=||+|. ..++..+++.+. .|++.|.++...+.+++. . +. ...+.+++.......|+|+++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~~-g------------~~-~~~s~~~~~~~~~~advVi~~ 66 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVDVAGKL-G------------IT-ARHSLEELVSKLEAPRTIWVM 66 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHC-C------------Ce-ecCCHHHHHHhCCCCCEEEEE
Confidence 355678775 335566665565 499999998777665431 1 11 111222221111125777764
Q ss_pred hhhhcCChhhHHHHHHHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEE
Q 018970 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYK 305 (348)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~ 305 (348)
-.-. +....++..+...+++|..++-..... ..+...+.+.+++.|...++
T Consensus 67 vp~~----~~~~~v~~~i~~~l~~g~ivid~st~~-------------~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 67 VPAG----EVTESVIKDLYPLLSPGDIVVDGGNSR-------------YKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred ecCc----hHHHHHHHHHhccCCCCCEEEECCCCC-------------chhHHHHHHHHHHcCCeEEe
Confidence 3311 255667777777787766444322111 01234466677777876655
No 454
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=53.91 E-value=66 Score=28.87 Aligned_cols=101 Identities=14% Similarity=-0.011 Sum_probs=55.6
Q ss_pred CCcEEEEecc-ccHHHH----HHHHhCCCcEEEEcCCH--HHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-----
Q 018970 158 HLVALDCGSG-IGRITK----NLLIRYFNEVDLLEPVS--HFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----- 225 (348)
Q Consensus 158 ~~~VLDvGcG-~G~~~~----~la~~~~~~v~~vD~S~--~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----- 225 (348)
+.++|-.|+| ++.++. .|++++. .|.+++.+. +.++...+.+. ..+.++.+|+.+..
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~----------~~~~~~~~Dv~~~~~i~~~ 75 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFGRALRLTERIAKRLP----------EPAPVLELDVTNEEHLASL 75 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCccchhHHHHHHHhcC----------CCCcEEeCCCCCHHHHHHH
Confidence 3578999983 344443 3444455 488887553 44444433332 13556777876643
Q ss_pred -----CCCCceeEEeechhhhc-------CC---hhhHH-----------HHHHHHHHcCCCCcEEEEEe
Q 018970 226 -----PETGRYDVIWVQWCIGH-------LT---DDDFV-----------SFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 226 -----~~~~~fD~Ii~~~~l~~-------~~---~~d~~-----------~~l~~~~~~LkpgG~lii~~ 269 (348)
...+.+|+++.+..+.. +. .+++. .+.+.+...|+++|.++...
T Consensus 76 ~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is 145 (256)
T PRK07889 76 ADRVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLD 145 (256)
T ss_pred HHHHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEe
Confidence 01257899887654321 11 12221 23456677778888776543
No 455
>PRK12937 short chain dehydrogenase; Provisional
Probab=53.69 E-value=1.1e+02 Score=26.76 Aligned_cols=104 Identities=19% Similarity=0.192 Sum_probs=52.8
Q ss_pred CCcEEEEecccc--H-HHHHHHHhCCCcEEEEcC-CHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-------
Q 018970 158 HLVALDCGSGIG--R-ITKNLLIRYFNEVDLLEP-VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------- 226 (348)
Q Consensus 158 ~~~VLDvGcG~G--~-~~~~la~~~~~~v~~vD~-S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~------- 226 (348)
+.+||=.|++.| . ++..|++++.. +..+.. ++...+...+..... ..++.+..+|+.+...
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~ 76 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGFA-VAVNYAGSAAAADELVAEIEAA-------GGRAIAVQADVADAAAVTRLFDA 76 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCCCHHHHHHHHHHHHhc-------CCeEEEEECCCCCHHHHHHHHHH
Confidence 457888887433 2 33444445554 655543 233233332222211 2357778888876320
Q ss_pred ---CCCceeEEeechhhh------cCChhhH-----------HHHHHHHHHcCCCCcEEEEEe
Q 018970 227 ---ETGRYDVIWVQWCIG------HLTDDDF-----------VSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 227 ---~~~~fD~Ii~~~~l~------~~~~~d~-----------~~~l~~~~~~LkpgG~lii~~ 269 (348)
..+..|+|+.+.... ..+.+++ ..+++.+.+.++++|.+++..
T Consensus 77 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 139 (245)
T PRK12937 77 AETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLS 139 (245)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEe
Confidence 114678888654432 1222222 133556666677788777764
No 456
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=53.52 E-value=74 Score=29.35 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=26.8
Q ss_pred cEEEEeccc-c-HHHHHHHHhCCCcEEEEcCCHHHHHHHH
Q 018970 160 VALDCGSGI-G-RITKNLLIRYFNEVDLLEPVSHFLDAAR 197 (348)
Q Consensus 160 ~VLDvGcG~-G-~~~~~la~~~~~~v~~vD~S~~~l~~a~ 197 (348)
+|.=||+|. | .++..++..+. +|.+.|.++..++.+.
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~ 42 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNPEAVAEVI 42 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHH
Confidence 577889986 3 45666766555 4999999988776554
No 457
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=53.28 E-value=78 Score=29.10 Aligned_cols=87 Identities=11% Similarity=0.106 Sum_probs=52.4
Q ss_pred cEEEEeccc--cHHHHHHHHhCC---CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 160 VALDCGSGI--GRITKNLLIRYF---NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 160 ~VLDvGcG~--G~~~~~la~~~~---~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
+|.=||||. +.++..|.+.+. .+|++.|.++.-++.+.+... +.. ..+..+.. ...|+|
T Consensus 4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g------------~~~-~~~~~e~~---~~aDiI 67 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYG------------ITI-TTNNNEVA---NSADIL 67 (272)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcC------------cEE-eCCcHHHH---hhCCEE
Confidence 688899986 335555555542 269999999887766554321 111 12322221 245888
Q ss_pred eechhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
+.+-- +.+...+++.+...++++ .++++
T Consensus 68 iLavk-----P~~~~~vl~~l~~~~~~~-~lvIS 95 (272)
T PRK12491 68 ILSIK-----PDLYSSVINQIKDQIKND-VIVVT 95 (272)
T ss_pred EEEeC-----hHHHHHHHHHHHHhhcCC-cEEEE
Confidence 86444 236677888888877765 45554
No 458
>PRK06484 short chain dehydrogenase; Validated
Probab=53.26 E-value=87 Score=31.35 Aligned_cols=73 Identities=19% Similarity=0.138 Sum_probs=45.5
Q ss_pred CCCcEEEEecccc---HHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-------
Q 018970 157 QHLVALDCGSGIG---RITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------- 226 (348)
Q Consensus 157 ~~~~VLDvGcG~G---~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~------- 226 (348)
.+.++|-.|++.| .++..|++++. +|.+++-++.-++...+.+. .++.++.+|+.+...
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~ 72 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLG----------PDHHALAMDVSDEAQIREGFEQ 72 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC----------CceeEEEeccCCHHHHHHHHHH
Confidence 3457888888766 24455555565 59999888777665554442 235567778765320
Q ss_pred ---CCCceeEEeechhh
Q 018970 227 ---ETGRYDVIWVQWCI 240 (348)
Q Consensus 227 ---~~~~fD~Ii~~~~l 240 (348)
..+..|+++.+..+
T Consensus 73 ~~~~~g~iD~li~nag~ 89 (520)
T PRK06484 73 LHREFGRIDVLVNNAGV 89 (520)
T ss_pred HHHHhCCCCEEEECCCc
Confidence 12568998876543
No 459
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=53.00 E-value=85 Score=32.51 Aligned_cols=92 Identities=11% Similarity=0.098 Sum_probs=55.9
Q ss_pred CcEEEEeccc-cHHHHHHH-HhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCcee
Q 018970 159 LVALDCGSGI-GRITKNLL-IRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYD 232 (348)
Q Consensus 159 ~~VLDvGcG~-G~~~~~la-~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD 232 (348)
.+|+=+|+|. |......+ +++. .++.+|.+++.++.+++. ...+..+|..+.. ..-.+.|
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-------------g~~v~~GDat~~~~L~~agi~~A~ 466 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKY-------------GYKVYYGDATQLELLRAAGAEKAE 466 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhC-------------CCeEEEeeCCCHHHHHhcCCccCC
Confidence 5788888775 44333333 3344 599999999999988652 1456777877643 1224678
Q ss_pred EEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 233 VIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 233 ~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
++++... +++....+-...+.+.|...++...
T Consensus 467 ~vv~~~~-----d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 467 AIVITCN-----EPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred EEEEEeC-----CHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 7776322 1122223334455678888888754
No 460
>PRK06139 short chain dehydrogenase; Provisional
Probab=52.18 E-value=42 Score=31.76 Aligned_cols=74 Identities=18% Similarity=0.056 Sum_probs=45.8
Q ss_pred CCcEEEEecccc--H-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--------
Q 018970 158 HLVALDCGSGIG--R-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP-------- 226 (348)
Q Consensus 158 ~~~VLDvGcG~G--~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-------- 226 (348)
+.+||-.|++.| . ++..+++++. +|.+++-++..++...+.+... +..+.+..+|+.+...
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~-------g~~~~~~~~Dv~d~~~v~~~~~~~ 78 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRAL-------GAEVLVVPTDVTDADQVKALATQA 78 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhc-------CCcEEEEEeeCCCHHHHHHHHHHH
Confidence 457888887543 2 3444555566 4999998888877666554332 2346667778765320
Q ss_pred --CCCceeEEeechh
Q 018970 227 --ETGRYDVIWVQWC 239 (348)
Q Consensus 227 --~~~~fD~Ii~~~~ 239 (348)
..+.+|++|.+-.
T Consensus 79 ~~~~g~iD~lVnnAG 93 (330)
T PRK06139 79 ASFGGRIDVWVNNVG 93 (330)
T ss_pred HHhcCCCCEEEECCC
Confidence 1156899987654
No 461
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=51.66 E-value=91 Score=29.13 Aligned_cols=96 Identities=18% Similarity=0.075 Sum_probs=54.0
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
..++.+||=.|||. |..+..++......+..++.++...+.+++ +... .-+.....+.. ....+.+|+
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~g~~--------~vi~~~~~~~~--~~~~~~~d~ 235 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALK-LGAD--------EFIATKDPEAM--KKAAGSLDL 235 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCCc--------EEecCcchhhh--hhccCCceE
Confidence 45667777777743 555555555533368999998888888754 2210 00000000110 001256898
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
|+.+-.- . ..+..+.+.|+++|.++...
T Consensus 236 v~~~~g~------~--~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 236 IIDTVSA------S--HDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred EEECCCC------c--chHHHHHHHhcCCCEEEEEe
Confidence 8843221 1 23567788899999888753
No 462
>PRK06500 short chain dehydrogenase; Provisional
Probab=51.59 E-value=1.4e+02 Score=26.04 Aligned_cols=70 Identities=21% Similarity=0.239 Sum_probs=40.6
Q ss_pred CcEEEEecccc--H-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC---------
Q 018970 159 LVALDCGSGIG--R-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--------- 226 (348)
Q Consensus 159 ~~VLDvGcG~G--~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--------- 226 (348)
.+||-.|++.| . ++..+++++. .|.+++.++..++...+... .++.+..+|+.+...
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~~~ 75 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELG----------ESALVIRADAGDVAAQKALAQALA 75 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhC----------CceEEEEecCCCHHHHHHHHHHHH
Confidence 46777776543 2 3344454555 59999888766655544432 235667777765321
Q ss_pred -CCCceeEEeechh
Q 018970 227 -ETGRYDVIWVQWC 239 (348)
Q Consensus 227 -~~~~fD~Ii~~~~ 239 (348)
..+.+|+|+.+..
T Consensus 76 ~~~~~id~vi~~ag 89 (249)
T PRK06500 76 EAFGRLDAVFINAG 89 (249)
T ss_pred HHhCCCCEEEECCC
Confidence 1146798876543
No 463
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=51.52 E-value=38 Score=30.58 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=47.2
Q ss_pred CcEEEEecc-ccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970 159 LVALDCGSG-IGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (348)
Q Consensus 159 ~~VLDvGcG-~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~ 237 (348)
.++|-+|+= +|.+....+...+ +|+.+|+.|.+.+... .++.|...- ......+|+|+-.
T Consensus 43 k~~lI~G~YltG~~iA~~L~~~~-eV~lvDI~p~lk~ll~--------------~~i~F~~~~----~~~~~~~DlIID~ 103 (252)
T PF06690_consen 43 KQALIFGAYLTGNFIASALSKKC-EVTLVDIHPHLKELLN--------------ENIKFMEFR----NGLEGNPDLIIDT 103 (252)
T ss_pred ceEEEEEEEeehHHHHHHhccCc-eEEEEeCcHHHHHHhc--------------CCCceeecc----CCCCCCCCEEEEC
Confidence 379999975 5666666665656 7999999998887662 345665321 1113589999988
Q ss_pred hhhhcCCh
Q 018970 238 WCIGHLTD 245 (348)
Q Consensus 238 ~~l~~~~~ 245 (348)
-.|.-+.+
T Consensus 104 TGlGGv~~ 111 (252)
T PF06690_consen 104 TGLGGVDP 111 (252)
T ss_pred CCCCCCCH
Confidence 88887764
No 464
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=51.40 E-value=94 Score=32.97 Aligned_cols=101 Identities=12% Similarity=0.095 Sum_probs=60.3
Q ss_pred CCcEEEEecccc--HHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCC-------CCCCCcCC----CcceeEEEcCCCCC
Q 018970 158 HLVALDCGSGIG--RITKNLLIRYFNEVDLLEPVSHFLDAARESLAP-------ENHMAPDM----HKATNFFCVPLQDF 224 (348)
Q Consensus 158 ~~~VLDvGcG~G--~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~-------~~~~~~~~----~~~i~~~~~d~~~~ 224 (348)
-.+|.-||+|+= .++..++..+.. |+.+|.+++.++.+.+++.. .+...... ..++++. .|+..+
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~ 390 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTP-IVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAGF 390 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh
Confidence 347999999973 345555666665 99999999999887654421 11111000 0122222 122221
Q ss_pred CCCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970 225 TPETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (348)
Q Consensus 225 ~~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii 267 (348)
...|+|+=. +++.+. --.++++++..+++|+.+|.-
T Consensus 391 ----~~aDlViEa-v~E~l~--~K~~vf~~l~~~~~~~~ilas 426 (714)
T TIGR02437 391 ----DNVDIVVEA-VVENPK--VKAAVLAEVEQHVREDAILAS 426 (714)
T ss_pred ----cCCCEEEEc-CcccHH--HHHHHHHHHHhhCCCCcEEEE
Confidence 356877743 334333 346899999999999877654
No 465
>PLN02688 pyrroline-5-carboxylate reductase
Probab=51.10 E-value=75 Score=28.76 Aligned_cols=85 Identities=12% Similarity=0.069 Sum_probs=49.8
Q ss_pred cEEEEeccc--cHHHHHHHHhCC---CcEEEE-cCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 160 VALDCGSGI--GRITKNLLIRYF---NEVDLL-EPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 160 ~VLDvGcG~--G~~~~~la~~~~---~~v~~v-D~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
+|.=||||. +.++..|++.++ ..++++ +.++...+.+.+. | +.. ..+..+.. ...|+
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~----g---------~~~-~~~~~e~~---~~aDv 64 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSL----G---------VKT-AASNTEVV---KSSDV 64 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHc----C---------CEE-eCChHHHH---hcCCE
Confidence 467789886 346666666554 258888 8887766554321 1 111 12222221 34688
Q ss_pred EeechhhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~li 266 (348)
|+.+- ++.+...++..+...+++|..++
T Consensus 65 Vil~v-----~~~~~~~vl~~l~~~~~~~~~iI 92 (266)
T PLN02688 65 IILAV-----KPQVVKDVLTELRPLLSKDKLLV 92 (266)
T ss_pred EEEEE-----CcHHHHHHHHHHHhhcCCCCEEE
Confidence 88654 23356778888877777766544
No 466
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=50.87 E-value=86 Score=28.20 Aligned_cols=103 Identities=15% Similarity=-0.017 Sum_probs=51.6
Q ss_pred CCcEEEEec-cccHH----HHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC-------
Q 018970 158 HLVALDCGS-GIGRI----TKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------- 225 (348)
Q Consensus 158 ~~~VLDvGc-G~G~~----~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------- 225 (348)
+.++|-.|+ |++.+ +..+++.+.. |..++......+..++..... ....+..+|+.+..
T Consensus 6 ~k~vlItGas~~~GIG~a~a~~l~~~G~~-v~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~Dv~d~~~v~~~~~ 76 (260)
T PRK06997 6 GKRILITGLLSNRSIAYGIAKACKREGAE-LAFTYVGDRFKDRITEFAAEF--------GSDLVFPCDVASDEQIDALFA 76 (260)
T ss_pred CcEEEEeCCCCCCcHHHHHHHHHHHCCCe-EEEEccchHHHHHHHHHHHhc--------CCcceeeccCCCHHHHHHHHH
Confidence 457899996 34433 4444455554 777653322222222221111 11234566776543
Q ss_pred ---CCCCceeEEeechhhh-----------cCChhhHHH-----------HHHHHHHcCCCCcEEEEEe
Q 018970 226 ---PETGRYDVIWVQWCIG-----------HLTDDDFVS-----------FFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 226 ---~~~~~fD~Ii~~~~l~-----------~~~~~d~~~-----------~l~~~~~~LkpgG~lii~~ 269 (348)
...+.+|+++.+-.+. .++.+++.. +.+.+...|+.+|.+++..
T Consensus 77 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~is 145 (260)
T PRK06997 77 SLGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 145 (260)
T ss_pred HHHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEe
Confidence 0125789988765332 233334333 3456666777777766643
No 467
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=50.49 E-value=87 Score=30.04 Aligned_cols=98 Identities=14% Similarity=-0.052 Sum_probs=55.5
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc---C----CCCCC
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV---P----LQDFT 225 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~---d----~~~~~ 225 (348)
..++.+||=.|+|. |..+..+++.... .|++++.++...+.+++.-.. .-+..... + +..+.
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~---------~~v~~~~~~~~~~~~~v~~~~ 271 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGAD---------YVFNPTKMRDCLSGEKVMEVT 271 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC---------EEEcccccccccHHHHHHHhc
Confidence 56677888888764 4445555555433 689999888766666553111 00111110 1 11111
Q ss_pred CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
....+|+|+.... .....+..+.+.|+++|.++...
T Consensus 272 -~g~gvDvvld~~g-------~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 272 -KGWGADIQVEAAG-------APPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred -CCCCCCEEEECCC-------CcHHHHHHHHHHHHcCCEEEEEC
Confidence 1235898885422 11245677788899999998753
No 468
>PRK06484 short chain dehydrogenase; Validated
Probab=50.44 E-value=1.2e+02 Score=30.33 Aligned_cols=102 Identities=17% Similarity=0.131 Sum_probs=59.2
Q ss_pred CCCcEEEEeccccH---HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-------
Q 018970 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------- 226 (348)
Q Consensus 157 ~~~~VLDvGcG~G~---~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~------- 226 (348)
.+.++|-.|++.|. ++..|++++. .|.+++-++.-++...+... ....+..+|+.+...
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~ 336 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALG----------DEHLSVQADITDEAAVESAFAQ 336 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC----------CceeEEEccCCCHHHHHHHHHH
Confidence 34577877776652 3445555565 59999988877776655442 224556677766420
Q ss_pred ---CCCceeEEeechhhh-------cCChhhHH-----------HHHHHHHHcCCCCcEEEEEe
Q 018970 227 ---ETGRYDVIWVQWCIG-------HLTDDDFV-----------SFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 227 ---~~~~fD~Ii~~~~l~-------~~~~~d~~-----------~~l~~~~~~LkpgG~lii~~ 269 (348)
..+..|+++.+-.+. ..+.+++. .+.+.+...|+.+|.+++..
T Consensus 337 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~is 400 (520)
T PRK06484 337 IQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLG 400 (520)
T ss_pred HHHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEEC
Confidence 125689998754332 12222222 23455556666778877654
No 469
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=49.93 E-value=53 Score=28.01 Aligned_cols=31 Identities=19% Similarity=0.083 Sum_probs=23.2
Q ss_pred cEEEEeccc-cH-HHHHHHHhCCCcEEEEcCCH
Q 018970 160 VALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVS 190 (348)
Q Consensus 160 ~VLDvGcG~-G~-~~~~la~~~~~~v~~vD~S~ 190 (348)
+|+=+|||. |. .+..|+..+..+++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 478899994 54 56666767887899998775
No 470
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=49.67 E-value=64 Score=28.79 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=40.9
Q ss_pred cEEEEeccc-cH-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCceeE
Q 018970 160 VALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRYDV 233 (348)
Q Consensus 160 ~VLDvGcG~-G~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~ 233 (348)
+++=+|||. |. ++..|.+.+. .|.++|.++..++..... ........+|..+.. ..-..+|+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~-----------~~~~~~v~gd~t~~~~L~~agi~~aD~ 69 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLAD-----------ELDTHVVIGDATDEDVLEEAGIDDADA 69 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhh-----------hcceEEEEecCCCHHHHHhcCCCcCCE
Confidence 578889986 43 3444444445 599999999888763221 123566667766532 22257898
Q ss_pred Eeec
Q 018970 234 IWVQ 237 (348)
Q Consensus 234 Ii~~ 237 (348)
+++.
T Consensus 70 vva~ 73 (225)
T COG0569 70 VVAA 73 (225)
T ss_pred EEEe
Confidence 8863
No 471
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=49.64 E-value=61 Score=29.93 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=56.0
Q ss_pred Eeccc--cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeechhhh
Q 018970 164 CGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQWCIG 241 (348)
Q Consensus 164 vGcG~--G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~~~l~ 241 (348)
||+|. +.++..|++.+. +|++.|.++..++...+. | +. ...+..+.. ...|+|+++-.-.
T Consensus 2 IGlG~mG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~----g---------~~-~~~s~~~~~---~~advVil~vp~~ 63 (288)
T TIGR01692 2 IGLGNMGGPMAANLLKAGH-PVRVFDLFPDAVEEAVAA----G---------AQ-AAASPAEAA---EGADRVITMLPAG 63 (288)
T ss_pred CcccHhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHc----C---------Ce-ecCCHHHHH---hcCCEEEEeCCCh
Confidence 45554 234555555555 599999998877665432 0 11 111211111 3468888653321
Q ss_pred cCChhhHHHHH---HHHHHcCCCCcEEEEEecccCCCceecCCCCceecCHHHHHHHHHhcCCeEEEE
Q 018970 242 HLTDDDFVSFF---KRAKVGLKPGGFFVLKENIARSGFVLDKEDRSITRSDFYFKELFSRCGLHIYKS 306 (348)
Q Consensus 242 ~~~~~d~~~~l---~~~~~~LkpgG~lii~~~~~~~~~~~d~~~~~~~~s~~~l~~l~~~aGf~~v~~ 306 (348)
.+...++ +.+...+++|-.++...... .-+...+.+.+++.|...++.
T Consensus 64 ----~~~~~v~~g~~~l~~~~~~g~~vid~st~~-------------p~~~~~~~~~~~~~g~~~vda 114 (288)
T TIGR01692 64 ----QHVISVYSGDEGILPKVAKGSLLIDCSTID-------------PDSARKLAELAAAHGAVFMDA 114 (288)
T ss_pred ----HHHHHHHcCcchHhhcCCCCCEEEECCCCC-------------HHHHHHHHHHHHHcCCcEEEC
Confidence 2344555 56666676654433221110 012345667777788877664
No 472
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=49.28 E-value=30 Score=32.38 Aligned_cols=74 Identities=11% Similarity=0.147 Sum_probs=59.3
Q ss_pred EcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC--CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCc
Q 018970 186 LEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGG 263 (348)
Q Consensus 186 vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG 263 (348)
....+..-+.+++++. ++.++.+|+.++-. +.+..|.++...+-..+++..+..++.++.+-+.||.
T Consensus 292 ~yl~~~~YEsir~n~~-----------RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA 360 (414)
T COG5379 292 AYLDEGVYESIRQNLR-----------RVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGA 360 (414)
T ss_pred hhhchhhHHHHHhhhh-----------heeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCc
Confidence 4445556666666653 47888888887653 4588999999999999999889999999999999999
Q ss_pred EEEEEec
Q 018970 264 FFVLKEN 270 (348)
Q Consensus 264 ~lii~~~ 270 (348)
.+|+...
T Consensus 361 ~VifRta 367 (414)
T COG5379 361 RVIFRTA 367 (414)
T ss_pred EEEEecc
Confidence 9999653
No 473
>PRK12744 short chain dehydrogenase; Provisional
Probab=49.13 E-value=1.4e+02 Score=26.40 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=52.1
Q ss_pred CCcEEEEeccccH---HHHHHHHhCCCcEEEEcC----CHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC----
Q 018970 158 HLVALDCGSGIGR---ITKNLLIRYFNEVDLLEP----VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP---- 226 (348)
Q Consensus 158 ~~~VLDvGcG~G~---~~~~la~~~~~~v~~vD~----S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---- 226 (348)
+.+||-.|++.|. ++..|++++.. |..++. +...++...+.+... ..++.++.+|+.+...
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~~-vv~i~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~D~~~~~~~~~~ 79 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGAK-AVAIHYNSAASKADAEETVAAVKAA-------GAKAVAFQADLTTAAAVEKL 79 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCc-EEEEecCCccchHHHHHHHHHHHHh-------CCcEEEEecCcCCHHHHHHH
Confidence 3578888865441 33444444554 555542 223333332222211 2346777888876420
Q ss_pred ------CCCceeEEeechhh------hcCChhhHH-----------HHHHHHHHcCCCCcEEEE
Q 018970 227 ------ETGRYDVIWVQWCI------GHLTDDDFV-----------SFFKRAKVGLKPGGFFVL 267 (348)
Q Consensus 227 ------~~~~fD~Ii~~~~l------~~~~~~d~~-----------~~l~~~~~~LkpgG~lii 267 (348)
..+..|+++.+... ...+.+++. .+++.+...++++|.+++
T Consensus 80 ~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~ 143 (257)
T PRK12744 80 FDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred HHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEE
Confidence 11468988876543 222222222 345677777777776654
No 474
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=48.86 E-value=1.3e+02 Score=29.61 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=27.4
Q ss_pred CCCCcEEEEeccc-cHHHHH-HHHhCCCcEEEEcCCHHHHHHH
Q 018970 156 NQHLVALDCGSGI-GRITKN-LLIRYFNEVDLLEPVSHFLDAA 196 (348)
Q Consensus 156 ~~~~~VLDvGcG~-G~~~~~-la~~~~~~v~~vD~S~~~l~~a 196 (348)
.++.+|+-+|||. |..... +...+...|++++.++.-....
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~l 222 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEEL 222 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHH
Confidence 3567999999986 444433 3334555799999987665533
No 475
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.79 E-value=1.4e+02 Score=26.72 Aligned_cols=102 Identities=14% Similarity=0.082 Sum_probs=54.8
Q ss_pred CCcEEEEecc----ccH-HHHHHHHhCCCcEEEEcCC---HHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----
Q 018970 158 HLVALDCGSG----IGR-ITKNLLIRYFNEVDLLEPV---SHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---- 225 (348)
Q Consensus 158 ~~~VLDvGcG----~G~-~~~~la~~~~~~v~~vD~S---~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---- 225 (348)
+.++|-.|++ .|. ++..|++++. +|..++.+ ...++...+... ..++.++.+|+.+..
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~---------~~~~~~~~~Dv~d~~~v~~ 76 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLE---------GQESLLLPCDVTSDEEITA 76 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcC---------CCceEEEecCCCCHHHHHH
Confidence 4578999975 333 3444455555 48777543 233444433332 124567777887643
Q ss_pred ------CCCCceeEEeechhhhc----------CChhhHHH-----------HHHHHHHcCCCCcEEEEEe
Q 018970 226 ------PETGRYDVIWVQWCIGH----------LTDDDFVS-----------FFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 226 ------~~~~~fD~Ii~~~~l~~----------~~~~d~~~-----------~l~~~~~~LkpgG~lii~~ 269 (348)
...+.+|+++.+-.+.. .+.+++.. +.+.+...|+++|.++...
T Consensus 77 ~~~~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~is 147 (257)
T PRK08594 77 CFETIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLT 147 (257)
T ss_pred HHHHHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEc
Confidence 01267898886543321 12122221 2355666777788877654
No 476
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=48.63 E-value=19 Score=34.44 Aligned_cols=111 Identities=11% Similarity=0.013 Sum_probs=73.5
Q ss_pred CCCCCcEEEEeccccHHHHHHHHhCCCcEEEEcCCHHHHHH-------HHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-
Q 018970 155 NNQHLVALDCGSGIGRITKNLLIRYFNEVDLLEPVSHFLDA-------ARESLAPENHMAPDMHKATNFFCVPLQDFTP- 226 (348)
Q Consensus 155 ~~~~~~VLDvGcG~G~~~~~la~~~~~~v~~vD~S~~~l~~-------a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~- 226 (348)
..++.-|.|-=.|||.+....+ ++..-|.|.||+-.|+.. .+.+++..|.. ..-..+..+|..+-+.
T Consensus 206 v~pGdivyDPFVGTGslLvsaa-~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~----~~fldvl~~D~sn~~~r 280 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAA-HFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS----SQFLDVLTADFSNPPLR 280 (421)
T ss_pred cCCCCEEecCccccCceeeehh-hhcceeeccccchheeecccCCCcchhHhHHHhCCc----chhhheeeecccCcchh
Confidence 5788899999999999988766 444469999999888873 23344444322 2345677778777553
Q ss_pred CCCceeEEeechhh------------------------hcCChh-------hHHHHHHHHHHcCCCCcEEEEEec
Q 018970 227 ETGRYDVIWVQWCI------------------------GHLTDD-------DFVSFFKRAKVGLKPGGFFVLKEN 270 (348)
Q Consensus 227 ~~~~fD~Ii~~~~l------------------------~~~~~~-------d~~~~l~~~~~~LkpgG~lii~~~ 270 (348)
....||.|+|-... .|.+.. -+...|.-.++.|..||.+++--+
T Consensus 281 sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 281 SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 23579999964211 122211 133567778889999999988654
No 477
>PRK08818 prephenate dehydrogenase; Provisional
Probab=48.47 E-value=58 Score=31.58 Aligned_cols=75 Identities=20% Similarity=0.128 Sum_probs=44.1
Q ss_pred CcEEEEec-cc--cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 159 LVALDCGS-GI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 159 ~~VLDvGc-G~--G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
.+|+=||. |- |.++..|.+.....|+++|.+..- ..+..+. -...|+|+
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-------------------------~~~~~~~---v~~aDlVi 56 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-------------------------SLDPATL---LQRADVLI 56 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-------------------------cCCHHHH---hcCCCEEE
Confidence 47899998 63 445565554433369999963100 0111111 13579999
Q ss_pred echhhhcCChhhHHHHHHHHHHc---CCCCcEEE
Q 018970 236 VQWCIGHLTDDDFVSFFKRAKVG---LKPGGFFV 266 (348)
Q Consensus 236 ~~~~l~~~~~~d~~~~l~~~~~~---LkpgG~li 266 (348)
.+-.+.. ...+++++... |+||..+.
T Consensus 57 lavPv~~-----~~~~l~~l~~~~~~l~~~~iVt 85 (370)
T PRK08818 57 FSAPIRH-----TAALIEEYVALAGGRAAGQLWL 85 (370)
T ss_pred EeCCHHH-----HHHHHHHHhhhhcCCCCCeEEE
Confidence 8777664 45677777765 67765544
No 478
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=48.38 E-value=60 Score=30.36 Aligned_cols=96 Identities=18% Similarity=0.064 Sum_probs=53.7
Q ss_pred CCCCcEEEEeccc-cHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCC---CCCCCCCCc
Q 018970 156 NQHLVALDCGSGI-GRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL---QDFTPETGR 230 (348)
Q Consensus 156 ~~~~~VLDvGcG~-G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~ 230 (348)
.++.+||-.|+|. |..+..+++.... .|.+++-++.-.+.+++.-.. ..+.....++ ..+. ..+.
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~---------~~~~~~~~~~~~~~~~~-~~~~ 231 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGAD---------VVINPREEDVVEVKSVT-DGTG 231 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcc---------eeeCcccccHHHHHHHc-CCCC
Confidence 4667788877754 5666666665443 588887777666666542111 0011111111 1111 1246
Q ss_pred eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+|+|+.+-. . ...+..+.+.|+++|.++...
T Consensus 232 vd~vld~~g----~----~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 232 VDVVLEMSG----N----PKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CCEEEECCC----C----HHHHHHHHHHhccCCEEEEEc
Confidence 899985322 0 134567788899999988753
No 479
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=47.73 E-value=1.8e+02 Score=27.12 Aligned_cols=97 Identities=21% Similarity=0.147 Sum_probs=54.7
Q ss_pred CCCCCcEEEEecc-ccHHHHHHHHhCCCc-EEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCC----CCCCCCC
Q 018970 155 NNQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (348)
Q Consensus 155 ~~~~~~VLDvGcG-~G~~~~~la~~~~~~-v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~----~~~~~~~ 228 (348)
..++.+||-.|+| .|..+..++...... |.+++.++...+.+++.-.. .-+.....++ ..+. ..
T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~---------~~v~~~~~~~~~~l~~~~-~~ 228 (340)
T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGAT---------YVVNPFKEDVVKEVADLT-DG 228 (340)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc---------EEEcccccCHHHHHHHhc-CC
Confidence 3456778777765 355666666554444 88888887777766543111 0011111111 0111 22
Q ss_pred CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
..+|+|+-+.. . ...+..+.+.|+++|.++...
T Consensus 229 ~~~d~vld~~g----~----~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 229 EGVDVFLEMSG----A----PKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred CCCCEEEECCC----C----HHHHHHHHHhhcCCCEEEEEc
Confidence 46899986411 1 145678889999999987754
No 480
>PRK08655 prephenate dehydrogenase; Provisional
Probab=47.59 E-value=85 Score=31.11 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=46.8
Q ss_pred cEEEEe-cc-ccH-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEee
Q 018970 160 VALDCG-SG-IGR-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWV 236 (348)
Q Consensus 160 ~VLDvG-cG-~G~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~ 236 (348)
+|+=|| +| .|. ++..+...+. .|+++|.++........... +.+ ..+..+. -...|+|+.
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~~~~~~~~a~~~g------------v~~-~~~~~e~---~~~aDvVIl 64 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRDPKKGKEVAKELG------------VEY-ANDNIDA---AKDADIVII 64 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHcC------------Cee-ccCHHHH---hccCCEEEE
Confidence 577787 55 344 4455554455 59999988766533222211 111 1121111 134688887
Q ss_pred chhhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970 237 QWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (348)
Q Consensus 237 ~~~l~~~~~~d~~~~l~~~~~~LkpgG~li 266 (348)
+-... ....+++.+...++||..++
T Consensus 65 avp~~-----~~~~vl~~l~~~l~~~~iVi 89 (437)
T PRK08655 65 SVPIN-----VTEDVIKEVAPHVKEGSLLM 89 (437)
T ss_pred ecCHH-----HHHHHHHHHHhhCCCCCEEE
Confidence 65544 34467778877888876544
No 481
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=47.28 E-value=34 Score=32.71 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=24.9
Q ss_pred CCcEEEEeccc-cH-HHHHHHHhCCCcEEEEcCCH
Q 018970 158 HLVALDCGSGI-GR-ITKNLLIRYFNEVDLLEPVS 190 (348)
Q Consensus 158 ~~~VLDvGcG~-G~-~~~~la~~~~~~v~~vD~S~ 190 (348)
..+||=||||. |. ++..|+..++.+++.+|.+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 36899999994 43 56666667877899999764
No 482
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=47.27 E-value=50 Score=31.33 Aligned_cols=94 Identities=17% Similarity=0.121 Sum_probs=56.1
Q ss_pred CCCCCcEEEEecc-ccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc---C----CCCCC
Q 018970 155 NNQHLVALDCGSG-IGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCV---P----LQDFT 225 (348)
Q Consensus 155 ~~~~~~VLDvGcG-~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~---d----~~~~~ 225 (348)
..++.+||-.|+| .|..+..+++.... .|++++.++...+.+++ +.- ..+... + +..+.
T Consensus 180 ~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~-~g~-----------~~vv~~~~~~~~~~l~~~~ 247 (363)
T cd08279 180 VRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR-FGA-----------THTVNASEDDAVEAVRDLT 247 (363)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-hCC-----------eEEeCCCCccHHHHHHHHc
Confidence 5667789888875 36666666655443 48899888888777753 211 011111 1 11111
Q ss_pred CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+...+|+|+..-.- ...+..+.+.|+++|.++...
T Consensus 248 -~~~~vd~vld~~~~--------~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 248 -DGRGADYAFEAVGR--------AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred -CCCCCCEEEEcCCC--------hHHHHHHHHHhhcCCeEEEEe
Confidence 12458988743220 135677888899999988753
No 483
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=47.22 E-value=1.5e+02 Score=28.08 Aligned_cols=95 Identities=18% Similarity=0.101 Sum_probs=54.9
Q ss_pred CCCCCcEEEEecc-ccHHHHHHHHhCCCc-EEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC------CC
Q 018970 155 NNQHLVALDCGSG-IGRITKNLLIRYFNE-VDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF------TP 226 (348)
Q Consensus 155 ~~~~~~VLDvGcG-~G~~~~~la~~~~~~-v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~------~~ 226 (348)
..++.+||-.|+| .|..+..+++..... |++++.++...+.+++. .. ..+...+-.++ ..
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~-g~-----------~~v~~~~~~~~~~~l~~~~ 252 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL-GA-----------THTVNAAKEDAVAAIREIT 252 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CC-----------ceEecCCcccHHHHHHHHh
Confidence 3566778877765 355566666554334 88898888888777542 21 01111111111 01
Q ss_pred CCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 227 ETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 227 ~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
....+|+|+..-. . ...+..+.++|+++|.++...
T Consensus 253 ~~~~~d~vld~vg-------~-~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 253 GGRGVDVVVEALG-------K-PETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred CCCCCCEEEEeCC-------C-HHHHHHHHHHHhcCCEEEEEc
Confidence 1245899885321 1 125677888999999988753
No 484
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=47.05 E-value=55 Score=30.48 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=29.4
Q ss_pred CcEEEEeccc--cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHH
Q 018970 159 LVALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARES 199 (348)
Q Consensus 159 ~~VLDvGcG~--G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~ 199 (348)
.+|.=||+|. +.++..++..+. .|+++|.+++.++.+++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~ 46 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGV 46 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH
Confidence 4688899986 335555555555 599999999998887764
No 485
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.86 E-value=41 Score=32.76 Aligned_cols=104 Identities=13% Similarity=0.193 Sum_probs=65.2
Q ss_pred CCCcEEEEec-ccc------HHHHHHHHhCCC-cEEEEc-CCHHHHHHHHHHhCCCCCCCcCCCcceeEEEc----CCCC
Q 018970 157 QHLVALDCGS-GIG------RITKNLLIRYFN-EVDLLE-PVSHFLDAARESLAPENHMAPDMHKATNFFCV----PLQD 223 (348)
Q Consensus 157 ~~~~VLDvGc-G~G------~~~~~la~~~~~-~v~~vD-~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~----d~~~ 223 (348)
++..|+=+|- |.| -++.++-.+++. .+.+.| .-+.+.+..+.++... .+.|+.. |.-.
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~---------~iP~ygsyte~dpv~ 170 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKA---------RVPFYGSYTEADPVK 170 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhh---------CCeeEecccccchHH
Confidence 3445666663 233 345555556665 455666 4556667777766543 3444443 2211
Q ss_pred CC------CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 224 FT------PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 224 ~~------~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
+. +..+.||+|++--+=.|-.+..+-.-+..+.+.++|+-++++.+
T Consensus 171 ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmD 222 (483)
T KOG0780|consen 171 IASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMD 222 (483)
T ss_pred HHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEe
Confidence 11 23468999999776666665667777888999999999999876
No 486
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=46.68 E-value=42 Score=31.94 Aligned_cols=96 Identities=19% Similarity=0.095 Sum_probs=56.8
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhC-CCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCC----CCCCCCC
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRY-FNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPL----QDFTPET 228 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~-~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~----~~~~~~~ 228 (348)
..++.+||-.|+|. |..+..+++.. ...+++++.++...+.+++.-.. .-+.....++ .... .
T Consensus 184 ~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~---------~~i~~~~~~~~~~v~~~~--~ 252 (365)
T cd08278 184 PRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGAT---------HVINPKEEDLVAAIREIT--G 252 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCc---------EEecCCCcCHHHHHHHHh--C
Confidence 45678899888764 55666666553 43699999998888877653111 0001000010 1111 2
Q ss_pred CceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 229 GRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 229 ~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
..+|+|+-+-.- ...+..+.+.|+++|.++...
T Consensus 253 ~~~d~vld~~g~--------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 253 GGVDYALDTTGV--------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred CCCcEEEECCCC--------cHHHHHHHHHhccCCEEEEeC
Confidence 458988853210 135677888899999988754
No 487
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=46.54 E-value=1.4e+02 Score=27.88 Aligned_cols=101 Identities=16% Similarity=0.189 Sum_probs=52.7
Q ss_pred cEEEEeccc-cHH-HHHHHHhCC-CcEEEEcCCHHHHH-HHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEe
Q 018970 160 VALDCGSGI-GRI-TKNLLIRYF-NEVDLLEPVSHFLD-AARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIW 235 (348)
Q Consensus 160 ~VLDvGcG~-G~~-~~~la~~~~-~~v~~vD~S~~~l~-~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii 235 (348)
+|.-||+|. |.. +..++.++. .++..+|.++..++ .+.+....... .....+...|.+++ ...|+|+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~-----~~~~~i~~~d~~~l----~~aDiVi 72 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPF-----VKPVRIYAGDYADC----KGADVVV 72 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccc-----cCCeEEeeCCHHHh----CCCCEEE
Confidence 578899986 443 333344443 47999999887664 33333221101 11123333443332 3568888
Q ss_pred echhhhcCChh-----------hHHHHHHHHHHcCCCCcEEEEEec
Q 018970 236 VQWCIGHLTDD-----------DFVSFFKRAKVGLKPGGFFVLKEN 270 (348)
Q Consensus 236 ~~~~l~~~~~~-----------d~~~~l~~~~~~LkpgG~lii~~~ 270 (348)
+......-+.. -+..+.+++.+ ..|+|++++..+
T Consensus 73 ita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~-~~~~giiiv~tN 117 (308)
T cd05292 73 ITAGANQKPGETRLDLLKRNVAIFKEIIPQILK-YAPDAILLVVTN 117 (308)
T ss_pred EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecC
Confidence 75443222111 13445555555 458899888753
No 488
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=46.46 E-value=48 Score=31.39 Aligned_cols=76 Identities=18% Similarity=0.049 Sum_probs=45.2
Q ss_pred EEEEeccccHHHHHHHHhCCC-cEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCC------CC-CCCCcee
Q 018970 161 ALDCGSGIGRITKNLLIRYFN-EVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQD------FT-PETGRYD 232 (348)
Q Consensus 161 VLDvGcG~G~~~~~la~~~~~-~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~------~~-~~~~~fD 232 (348)
-+|||.|.--+--.+..+... ..+++|+.......|..++...++. ..+.+......+ .. .++..||
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~ls-----s~ikvV~~~~~ktll~d~~~~~~e~~yd 180 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLS-----SLIKVVKVEPQKTLLMDALKEESEIIYD 180 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccc-----cceeeEEecchhhcchhhhccCccceee
Confidence 478988876544333333222 5789999999999999888775542 223333321111 11 1134699
Q ss_pred EEeechhhh
Q 018970 233 VIWVQWCIG 241 (348)
Q Consensus 233 ~Ii~~~~l~ 241 (348)
.+.|+..|.
T Consensus 181 FcMcNPPFf 189 (419)
T KOG2912|consen 181 FCMCNPPFF 189 (419)
T ss_pred EEecCCchh
Confidence 999987654
No 489
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=46.45 E-value=1.1e+02 Score=28.34 Aligned_cols=99 Identities=17% Similarity=0.156 Sum_probs=54.1
Q ss_pred CcEEEEeccc-c-HHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhC-------CCCCCCcCC----CcceeEEEcCCCCCC
Q 018970 159 LVALDCGSGI-G-RITKNLLIRYFNEVDLLEPVSHFLDAARESLA-------PENHMAPDM----HKATNFFCVPLQDFT 225 (348)
Q Consensus 159 ~~VLDvGcG~-G-~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~-------~~~~~~~~~----~~~i~~~~~d~~~~~ 225 (348)
.+|.=||+|. | .++..++..+. +|+++|.++..++.+++.+. ..+...... ...+.+ ..+.+.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~- 81 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TTNLEEL- 81 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eCCHHHh-
Confidence 3688899985 3 45555665565 59999999999887654321 111100000 001111 1222211
Q ss_pred CCCCceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEE
Q 018970 226 PETGRYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFV 266 (348)
Q Consensus 226 ~~~~~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~li 266 (348)
...|+|+.+-. .. .+....+++++...++|+..|+
T Consensus 82 ---~~aD~Vieav~-e~--~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 82 ---RDADFIIEAIV-ES--EDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred ---CCCCEEEEcCc-cC--HHHHHHHHHHHHhhCCCCcEEE
Confidence 34588876422 10 1234567888888888887665
No 490
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=45.50 E-value=83 Score=28.23 Aligned_cols=103 Identities=19% Similarity=0.166 Sum_probs=51.7
Q ss_pred CCcEEEEecc-ccHHHHHH----HHhCCCcEEEEcCCHH---HHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC---
Q 018970 158 HLVALDCGSG-IGRITKNL----LIRYFNEVDLLEPVSH---FLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP--- 226 (348)
Q Consensus 158 ~~~VLDvGcG-~G~~~~~l----a~~~~~~v~~vD~S~~---~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--- 226 (348)
+.++|-.|++ ++.++..+ ++.+. +|..++.+.+ ..+.+++. ... .....++.+|+.+...
T Consensus 6 ~k~~lItGas~~~GIG~aia~~la~~G~-~v~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~Dl~d~~~v~~ 76 (258)
T PRK07370 6 GKKALVTGIANNRSIAWGIAQQLHAAGA-ELGITYLPDEKGRFEKKVREL-TEP-------LNPSLFLPCDVQDDAQIEE 76 (258)
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEEecCcccchHHHHHHHH-Hhc-------cCcceEeecCcCCHHHHHH
Confidence 4578999974 34444444 44455 4766643221 11222222 111 1124466677766431
Q ss_pred -------CCCceeEEeechhhh----------cCChhhHHH-----------HHHHHHHcCCCCcEEEEEe
Q 018970 227 -------ETGRYDVIWVQWCIG----------HLTDDDFVS-----------FFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 227 -------~~~~fD~Ii~~~~l~----------~~~~~d~~~-----------~l~~~~~~LkpgG~lii~~ 269 (348)
..+.+|+++.+..+. .++.+++.. +.+.+...|+.+|.++...
T Consensus 77 ~~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~is 147 (258)
T PRK07370 77 TFETIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLT 147 (258)
T ss_pred HHHHHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 125789988765432 112223222 3456666777778776654
No 491
>PRK12743 oxidoreductase; Provisional
Probab=45.48 E-value=1.4e+02 Score=26.44 Aligned_cols=72 Identities=19% Similarity=0.158 Sum_probs=40.2
Q ss_pred CcEEEEeccccHHHHHH----HHhCCCcEEEEc-CCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCC-------
Q 018970 159 LVALDCGSGIGRITKNL----LIRYFNEVDLLE-PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTP------- 226 (348)
Q Consensus 159 ~~VLDvGcG~G~~~~~l----a~~~~~~v~~vD-~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~------- 226 (348)
.+||-.|++.| ++..+ ++++. .|..+. .+...++.+.+..... ..++.++.+|+.+...
T Consensus 3 k~vlItGas~g-iG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~ 73 (256)
T PRK12743 3 QVAIVTASDSG-IGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSH-------GVRAEIRQLDLSDLPEGAQALDK 73 (256)
T ss_pred CEEEEECCCch-HHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhc-------CCceEEEEccCCCHHHHHHHHHH
Confidence 46888887544 44444 44455 476664 3444454444433221 2357788888876420
Q ss_pred ---CCCceeEEeechh
Q 018970 227 ---ETGRYDVIWVQWC 239 (348)
Q Consensus 227 ---~~~~fD~Ii~~~~ 239 (348)
..+..|+|+.+..
T Consensus 74 ~~~~~~~id~li~~ag 89 (256)
T PRK12743 74 LIQRLGRIDVLVNNAG 89 (256)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1146899887544
No 492
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=45.33 E-value=1.8e+02 Score=28.52 Aligned_cols=89 Identities=10% Similarity=0.015 Sum_probs=51.4
Q ss_pred cEEEEeccccHHHHHHHH----hCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC----CCCCce
Q 018970 160 VALDCGSGIGRITKNLLI----RYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT----PETGRY 231 (348)
Q Consensus 160 ~VLDvGcG~G~~~~~la~----~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----~~~~~f 231 (348)
+|+=+||| .++..++. .+. .|.++|.+++.++.+++.. .+.+..+|..+.. ..-..+
T Consensus 2 ~viIiG~G--~ig~~~a~~L~~~g~-~v~vid~~~~~~~~~~~~~------------~~~~~~gd~~~~~~l~~~~~~~a 66 (453)
T PRK09496 2 KIIIVGAG--QVGYTLAENLSGENN-DVTVIDTDEERLRRLQDRL------------DVRTVVGNGSSPDVLREAGAEDA 66 (453)
T ss_pred EEEEECCC--HHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhc------------CEEEEEeCCCCHHHHHHcCCCcC
Confidence 57778874 55555544 344 5999999999888776532 2456666665421 112468
Q ss_pred eEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970 232 DVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 232 D~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
|.|++... +++....+....+.+.|.-.+++.
T Consensus 67 ~~vi~~~~-----~~~~n~~~~~~~r~~~~~~~ii~~ 98 (453)
T PRK09496 67 DLLIAVTD-----SDETNMVACQIAKSLFGAPTTIAR 98 (453)
T ss_pred CEEEEecC-----ChHHHHHHHHHHHHhcCCCeEEEE
Confidence 88876432 123334455555666555555554
No 493
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=45.22 E-value=75 Score=31.86 Aligned_cols=95 Identities=8% Similarity=0.019 Sum_probs=54.2
Q ss_pred cEEEEeccc--cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEEeec
Q 018970 160 VALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVIWVQ 237 (348)
Q Consensus 160 ~VLDvGcG~--G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~Ii~~ 237 (348)
+|-=||.|. +.++..|+++++. |++.|.+++.++...+.....+. ++. ...++.++...-...|+|++.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~~-V~v~dr~~~~~~~l~~~~~~~g~-------~i~-~~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGFK-ISVYNRTYEKTEEFVKKAKEGNT-------RVK-GYHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHhhhhcCC-------cce-ecCCHHHHHhcCCCCCEEEEE
Confidence 466677775 3467777777775 99999999998877654322111 111 112332222111135766654
Q ss_pred hhhhcCChhhHHHHHHHHHHcCCCCcEEEE
Q 018970 238 WCIGHLTDDDFVSFFKRAKVGLKPGGFFVL 267 (348)
Q Consensus 238 ~~l~~~~~~d~~~~l~~~~~~LkpgG~lii 267 (348)
-. +.+....+++.+...|++|-.++-
T Consensus 74 v~----~~~~v~~vi~~l~~~L~~g~iIID 99 (470)
T PTZ00142 74 IK----AGEAVDETIDNLLPLLEKGDIIID 99 (470)
T ss_pred eC----ChHHHHHHHHHHHhhCCCCCEEEE
Confidence 22 112456777888888888765543
No 494
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=45.11 E-value=1.1e+02 Score=24.66 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=44.5
Q ss_pred CCCcEEEEeccc-cH-HHHHHHHhCCCcEEEEc-CCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeE
Q 018970 157 QHLVALDCGSGI-GR-ITKNLLIRYFNEVDLLE-PVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDV 233 (348)
Q Consensus 157 ~~~~VLDvGcG~-G~-~~~~la~~~~~~v~~vD-~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 233 (348)
+..+|-=||+|. |. ++..|...++ .|.++- .|+...+.+...+.. . ...++.+.. ...|+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~srs~~sa~~a~~~~~~-----------~--~~~~~~~~~---~~aDl 71 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGH-EVVGVYSRSPASAERAAAFIGA-----------G--AILDLEEIL---RDADL 71 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTS-EEEEESSCHH-HHHHHHC--TT------------------TTGGG---CC-SE
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCccccccccccccc-----------c--ccccccccc---ccCCE
Confidence 446899999996 43 5565655565 477775 344344444433322 1 112333322 46899
Q ss_pred EeechhhhcCChhhHHHHHHHHHHc--CCCCcEEEE
Q 018970 234 IWVQWCIGHLTDDDFVSFFKRAKVG--LKPGGFFVL 267 (348)
Q Consensus 234 Ii~~~~l~~~~~~d~~~~l~~~~~~--LkpgG~lii 267 (348)
|++. ++|+.+..+.+.+... ++|| .+++
T Consensus 72 v~ia-----vpDdaI~~va~~La~~~~~~~g-~iVv 101 (127)
T PF10727_consen 72 VFIA-----VPDDAIAEVAEQLAQYGAWRPG-QIVV 101 (127)
T ss_dssp EEE------S-CCHHHHHHHHHHCC--S-TT--EEE
T ss_pred EEEE-----echHHHHHHHHHHHHhccCCCC-cEEE
Confidence 9863 4566677788888776 6665 4444
No 495
>PRK06125 short chain dehydrogenase; Provisional
Probab=45.08 E-value=1.1e+02 Score=27.28 Aligned_cols=75 Identities=15% Similarity=0.130 Sum_probs=45.0
Q ss_pred CCcEEEEecccc--H-HHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------CCC
Q 018970 158 HLVALDCGSGIG--R-ITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PET 228 (348)
Q Consensus 158 ~~~VLDvGcG~G--~-~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~~ 228 (348)
+.++|=.|++.| . ++..|++.+. +|.+++.++..++.+.+.+.... ..++.+..+|+.+.. ...
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 79 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAH------GVDVAVHALDLSSPEAREQLAAEA 79 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhc------CCceEEEEecCCCHHHHHHHHHHh
Confidence 457888887543 2 2344455556 59999988877766655443210 234667777876532 012
Q ss_pred CceeEEeechh
Q 018970 229 GRYDVIWVQWC 239 (348)
Q Consensus 229 ~~fD~Ii~~~~ 239 (348)
+..|+++.+..
T Consensus 80 g~id~lv~~ag 90 (259)
T PRK06125 80 GDIDILVNNAG 90 (259)
T ss_pred CCCCEEEECCC
Confidence 56898887543
No 496
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=44.94 E-value=1.6e+02 Score=26.46 Aligned_cols=92 Identities=21% Similarity=0.187 Sum_probs=51.2
Q ss_pred CCCCCcEEEEec--cccHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCC--CCCCCc
Q 018970 155 NNQHLVALDCGS--GIGRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDF--TPETGR 230 (348)
Q Consensus 155 ~~~~~~VLDvGc--G~G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~ 230 (348)
..++.+||=.|+ +.|..+..++......++.++.++ ..+.+++ +.. ..+....-.++ ......
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~-~g~-----------~~~~~~~~~~~~~~~~~~~ 208 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRS-LGA-----------DEVIDYTKGDFERAAAPGG 208 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHH-cCC-----------CEEEeCCCCchhhccCCCC
Confidence 456778988886 346666666655444577777666 5665533 211 01111111111 112246
Q ss_pred eeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEE
Q 018970 231 YDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLK 268 (348)
Q Consensus 231 fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~ 268 (348)
+|+++.+.. . ..+..+.+.|+++|.++..
T Consensus 209 ~d~v~~~~~-------~--~~~~~~~~~l~~~g~~v~~ 237 (309)
T cd05289 209 VDAVLDTVG-------G--ETLARSLALVKPGGRLVSI 237 (309)
T ss_pred ceEEEECCc-------h--HHHHHHHHHHhcCcEEEEE
Confidence 898875321 1 2567778889999998865
No 497
>PRK12742 oxidoreductase; Provisional
Probab=44.79 E-value=2e+02 Score=24.87 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=49.5
Q ss_pred CCcEEEEecccc--H-HHHHHHHhCCCcEEEEcC-CHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC------CC
Q 018970 158 HLVALDCGSGIG--R-ITKNLLIRYFNEVDLLEP-VSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFT------PE 227 (348)
Q Consensus 158 ~~~VLDvGcG~G--~-~~~~la~~~~~~v~~vD~-S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~------~~ 227 (348)
+.+||-.|++.| . ++..+++++. +|..+.. +++.++...... .+.+...|+.+.. ..
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~------------~~~~~~~D~~~~~~~~~~~~~ 72 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQET------------GATAVQTDSADRDAVIDVVRK 72 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHh------------CCeEEecCCCCHHHHHHHHHH
Confidence 357888887433 2 3344444455 4766643 444444332221 1345556665432 11
Q ss_pred CCceeEEeechhhhcC------ChhhHHH-----------HHHHHHHcCCCCcEEEEEe
Q 018970 228 TGRYDVIWVQWCIGHL------TDDDFVS-----------FFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 228 ~~~fD~Ii~~~~l~~~------~~~d~~~-----------~l~~~~~~LkpgG~lii~~ 269 (348)
.+.+|+++.+...... +.+++.. +++.+...++.+|.+++..
T Consensus 73 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 131 (237)
T PRK12742 73 SGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIG 131 (237)
T ss_pred hCCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 2468988876433221 1122222 2355666677778777654
No 498
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=44.22 E-value=64 Score=29.95 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=42.1
Q ss_pred CCCcEEEEeccccH---HHHHHHHhCCCcEEEEcCCHH---HHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCC---CC
Q 018970 157 QHLVALDCGSGIGR---ITKNLLIRYFNEVDLLEPVSH---FLDAARESLAPENHMAPDMHKATNFFCVPLQDFT---PE 227 (348)
Q Consensus 157 ~~~~VLDvGcG~G~---~~~~la~~~~~~v~~vD~S~~---~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~ 227 (348)
.+.++|=+|+| |. .+..++..+..+|+.++-++. ..+...+.+... ...+.+...|+.+.. ..
T Consensus 125 ~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~-------~~~~~~~~~d~~~~~~~~~~ 196 (289)
T PRK12548 125 KGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQE-------VPECIVNVYDLNDTEKLKAE 196 (289)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhc-------CCCceeEEechhhhhHHHhh
Confidence 34689999997 43 222234456667999988752 233322323221 112334444544321 11
Q ss_pred CCceeEEeechhhhcCC
Q 018970 228 TGRYDVIWVQWCIGHLT 244 (348)
Q Consensus 228 ~~~fD~Ii~~~~l~~~~ 244 (348)
-..+|+||.+-.+..-+
T Consensus 197 ~~~~DilINaTp~Gm~~ 213 (289)
T PRK12548 197 IASSDILVNATLVGMKP 213 (289)
T ss_pred hccCCEEEEeCCCCCCC
Confidence 13579999877777544
No 499
>PLN02712 arogenate dehydrogenase
Probab=44.09 E-value=91 Score=32.80 Aligned_cols=85 Identities=22% Similarity=0.134 Sum_probs=47.1
Q ss_pred CCCcEEEEeccc--cHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEEcCCCCCCCCCCceeEE
Q 018970 157 QHLVALDCGSGI--GRITKNLLIRYFNEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFCVPLQDFTPETGRYDVI 234 (348)
Q Consensus 157 ~~~~VLDvGcG~--G~~~~~la~~~~~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~I 234 (348)
...+|.=||+|. |.++..+...+. +|.++|.+... +.+++. . +.+ ..+..++.. ...|+|
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~-~~A~~~-G------------v~~-~~d~~e~~~--~~aDvV 112 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGH-TVLAHSRSDHS-LAARSL-G------------VSF-FLDPHDLCE--RHPDVI 112 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHH-HHHHHc-C------------CEE-eCCHHHHhh--cCCCEE
Confidence 446899999986 445666655554 59999987443 333321 1 111 223322211 236888
Q ss_pred eechhhhcCChhhHHHHHHHHH-HcCCCCcE
Q 018970 235 WVQWCIGHLTDDDFVSFFKRAK-VGLKPGGF 264 (348)
Q Consensus 235 i~~~~l~~~~~~d~~~~l~~~~-~~LkpgG~ 264 (348)
+.+-... ....+++.+. ..++||.+
T Consensus 113 iLavP~~-----~~~~vl~~l~~~~l~~g~i 138 (667)
T PLN02712 113 LLCTSII-----STENVLKSLPLQRLKRNTL 138 (667)
T ss_pred EEcCCHH-----HHHHHHHhhhhhcCCCCeE
Confidence 8754433 4556666664 45677663
No 500
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=43.92 E-value=58 Score=30.33 Aligned_cols=97 Identities=16% Similarity=0.083 Sum_probs=54.2
Q ss_pred CCCCCcEEEEeccc-cHHHHHHHHhCC-CcEEEEcCCHHHHHHHHHHhCCCCCCCcCCCcceeEEE---cCCCCCCCCCC
Q 018970 155 NNQHLVALDCGSGI-GRITKNLLIRYF-NEVDLLEPVSHFLDAARESLAPENHMAPDMHKATNFFC---VPLQDFTPETG 229 (348)
Q Consensus 155 ~~~~~~VLDvGcG~-G~~~~~la~~~~-~~v~~vD~S~~~l~~a~~~~~~~~~~~~~~~~~i~~~~---~d~~~~~~~~~ 229 (348)
..++.+||=.|+|. |..+..++.... ..|++++.++...+.+++. ... .-+.... ..+..+. ...
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~-g~~--------~~~~~~~~~~~~i~~~~-~~~ 234 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERL-GAD--------HVLNASDDVVEEVRELT-GGR 234 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHh-CCc--------EEEcCCccHHHHHHHHh-CCC
Confidence 34567888888654 444555555533 4588898888877777442 110 0000000 0011111 123
Q ss_pred ceeEEeechhhhcCChhhHHHHHHHHHHcCCCCcEEEEEe
Q 018970 230 RYDVIWVQWCIGHLTDDDFVSFFKRAKVGLKPGGFFVLKE 269 (348)
Q Consensus 230 ~fD~Ii~~~~l~~~~~~d~~~~l~~~~~~LkpgG~lii~~ 269 (348)
.+|+|+.+-.- ...+..+.+.|+++|.++...
T Consensus 235 ~~dvvld~~g~--------~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 235 GADAVIDFVGS--------DETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred CCCEEEEcCCC--------HHHHHHHHHHhhcCCEEEEEc
Confidence 58998853221 235677788899999988653
Done!